FGENESH 2.4 Prediction of potential genes in Nicotiana_dicot genomic DNA Time : Thu May 24 19:55:56 2007 Seq name: C04HBa0311A10.1 CU222537.4 submitted_to_sgn_as:C04HBa0311A10 Length of sequence: 144688 Number of predicted genes 25 in +chain 13 in -chain 12 Number of predicted exons 46 in +chain 24 in -chain 22 Positions of predicted genes and exons: Variant 1 from 1, Score:900.292285 G Str Feature Start End Score ORF Len 1 + 1 CDSf 1907 - 1980 -2.41 1907 - 1978 72 1 + 2 CDSl 2030 - 2117 6.04 2031 - 2117 87 1 + PolA 2286 0.75 2 + 1 CDSf 25213 - 25300 2.83 25213 - 25299 87 2 + 2 CDSl 25390 - 25460 0.68 25392 - 25460 69 2 + PolA 25687 2.25 3 - PolA 26621 2.25 3 - 1 CDSl 26897 - 27094 1.95 26897 - 27094 198 3 - 2 CDSf 27694 - 27831 5.60 27694 - 27831 138 4 - PolA 29145 0.75 4 - 1 CDSl 29492 - 32536 411.83 29492 - 32536 3045 4 - 2 CDSf 32579 - 34456 287.34 32579 - 34456 1878 5 - PolA 34717 0.75 5 - 1 CDSo 34787 - 34969 8.30 34787 - 34969 183 6 + 1 CDSf 36172 - 36231 3.71 36172 - 36231 60 6 + 2 CDSl 36643 - 36666 -1.83 36643 - 36666 24 6 + PolA 36877 2.25 7 + 1 CDSf 37518 - 37605 8.99 37518 - 37604 87 7 + 2 CDSl 38574 - 38686 1.98 38576 - 38686 111 7 + PolA 38915 -0.55 8 - PolA 43566 2.25 8 - 1 CDSo 43691 - 43939 4.78 43691 - 43939 249 9 - PolA 46475 -2.85 9 - 1 CDSo 46522 - 46722 6.92 46522 - 46722 201 10 + 1 CDSf 47390 - 47423 -1.53 47390 - 47422 33 10 + 2 CDSl 47733 - 47785 2.21 47735 - 47785 51 10 + PolA 47927 2.25 11 + 1 CDSf 48345 - 48400 7.90 48345 - 48398 54 11 + 2 CDSl 48725 - 48788 -4.22 48726 - 48788 63 11 + PolA 49086 2.25 12 - PolA 50293 0.75 12 - 1 CDSo 50376 - 50516 1.23 50376 - 50516 141 13 - PolA 55629 -0.55 13 - 1 CDSo 55740 - 55862 3.65 55740 - 55862 123 14 + 1 CDSo 73297 - 73776 23.75 73297 - 73776 480 14 + PolA 73780 -2.25 15 + 1 CDSf 73799 - 73930 16.31 73799 - 73930 132 15 + 2 CDSl 74098 - 74184 -3.03 74098 - 74184 87 15 + PolA 74515 2.25 16 - PolA 78981 2.25 16 - 1 CDSl 79028 - 79136 -2.97 79028 - 79135 108 16 - 2 CDSf 79173 - 79243 6.24 79175 - 79243 69 17 + 1 CDSf 115159 - 115278 0.15 115159 - 115278 120 17 + 2 CDSl 116446 - 116622 13.03 116446 - 116622 177 17 + PolA 116798 0.75 18 + 1 CDSf 117416 - 117479 6.78 117416 - 117478 63 18 + 2 CDSl 117864 - 117895 -5.14 117866 - 117895 30 18 + PolA 117931 0.75 19 - PolA 117969 2.25 19 - 1 CDSl 118099 - 118208 5.51 118099 - 118206 108 19 - 2 CDSi 119957 - 120164 19.82 119958 - 120164 207 19 - 3 CDSi 120242 - 120284 18.15 120242 - 120283 42 19 - 4 CDSi 120707 - 120830 8.57 120709 - 120828 120 19 - 5 CDSi 121165 - 121324 27.07 121166 - 121324 159 19 - 6 CDSf 121421 - 121576 18.40 121421 - 121576 156 20 - PolA 127062 2.25 20 - 1 CDSo 127320 - 127349 -0.19 127320 - 127349 30 21 + 1 CDSo 127716 - 127841 2.96 127716 - 127841 126 21 + PolA 128075 0.75 22 - PolA 136921 -0.55 22 - 1 CDSl 136994 - 137069 2.84 136994 - 137068 75 22 - 2 CDSf 137506 - 137597 5.38 137508 - 137597 90 23 + 1 CDSf 138932 - 139001 2.38 138932 - 139000 69 23 + 2 CDSl 139631 - 139899 2.74 139633 - 139899 267 23 + PolA 140051 2.25 24 + 1 CDSf 140482 - 140517 -2.65 140482 - 140517 36 24 + 2 CDSl 141350 - 141574 7.09 141350 - 141574 225 24 + PolA 141699 2.25 25 - PolA 143158 2.25 25 - 1 CDSl 143366 - 143522 5.25 143366 - 143521 156 25 - 2 CDSf 143888 - 143985 -0.81 143890 - 143985 96 Predicted protein(s): >FGENESH: 1 2 exon (s) 1907 - 2117 53 aa, chain + MKTEKIQHIFSTCIYKYYDLTDWERQPTTPRRMGLTNPKDIAPLLQRPIKIFV >FGENESH: 2 2 exon (s) 25213 - 25460 52 aa, chain + MKTRYYYHVEFMSRWTSFDHLEEKYRYGVGSRGEIKVERDFHNILKSSNKRK >FGENESH: 3 2 exon (s) 26897 - 27831 111 aa, chain - MCKEFPRDDKAGQGEFRYILMRQSKFGFAVVAVMVVNISWYYFFTEESNVFFNSNEKQDM KRVYPTSNCTTLRDNNWDKVRQDETINGVGQAGERINMVELLNKVERAGKI >FGENESH: 4 2 exon (s) 29492 - 34456 1640 aa, chain - MDEEEGVSSVTSVSVAETLVENLGCEGQPDEVYNVEDGGEIMVEVVGSDVFVDGVCGDEL GQHGSGKVDSLDEDRDFRSSEARQEDYGNTGNGVEGVFEVAGSSRDVAVAAGTEIVSGVT AFSVVEEVNLSVSEEDVEASNVVMSSKSAASAYLASVDVAGLFRGVSETVDNESDSRLPS ETTDRVLELVSSRVREEDAEGNVGRSAVSVEGSAELTSQRLDISDDGVWNPGIEPLAESS SFVPQENSNRETEEANNLRLDSSEKDQSSVREIIGQASEKDISSHARNQITDNPDEGAVS GDSGVLGKSHSEVVTIETNAHDQDRDALGDKDENTHSEVESMETDVLEQRDDMGNNDEDS HQDNELVHKRHSEAETMETDVHDKEAVGLGIENANSHSDVEPMETDVYDQEGGVLFKDTN NNSNAVVELPEKINHEDDQIINMCHQVPAGHDNLGVDIPVSQDSARDCADEMVSLRPNSQ FPEDKGEEIKVGSGDSRIAAEHSPGAHDHSLGINIANVPLHPGNQEHSFKENLAAENGVI GSSCGKANHAEDRELKVDNMHEDKSNFALCTQAETSDCMDIQTSNCTEVYLEGSEVSTCK VSISSDNGSLGGSDELPDVQSKVADGASAHNTRNLDEMEVERVCSETTGSLTFSMNDDSL NIVEVDARMENDARVGPLEAPYEPACQSDGASAEMDKDRDAQLGTTTSSLSCTMGENSLE DETRVSLETMISARDMNTGDETIKVTHLLPESFDGDMSVQHVENESLLLFDNYAGKEGDP QMSAVPSNDDVMTEDPEGTSLACQDTSKTSDSNAVNVKSTSLLKERDFEVEAEHKLEAKD TALGEGPVQGDDLADDTKNGAVTRLCSNIIEESEFYVKQEGVVEHLNMLASEMDLDSENA ATADEISNEENNSNLEDAIKSGVAINFGDDVPPVSDQIVGTCIFDASDTKMNQVNEDQDS FKATEDLVFHHAPEIMKVTDEHEKGEVKKLNPGTVQESPEQDKGTEEVVSETSHTLMFSE KPVSLLNMHPGYLIPPENEGDYSISDLVWGKVRSHPWWPGQIFDPSDASEKAIKYHKKDG FLVAYFGDRTFAWNDASVLRPFCSYFSQIEKQSNSETFQNAISSALEEVSRRVELGLACS CTPKDSYDEISCQIVENTGIREEASKRYGVDKSTGVTSFVPDKLLHYMKALALSPTCRAD RLDLTIARAQLVAFCRFKGYRLPPQFLLSGELLENDADIPHVDSAIDDNGHASEGSEQHP TSKVSARKRKHSSKDSSQNKLKERSLSELMDNMECEYSPDGEDDLDEKSFTSSKKRKGVD SRTDRSDKKTSAYAPKVLTTASVSPKTSFRIGECIQRVASQLTRSASLLKGSSDQSGADV QSQDSPKGKVVIPTELPSANELLSQLQLVARAPMKGYNLKTITNFFSGFRNSVAVGQKSM KQNLSAGRAAGGRKKRASQTVAGFAEEFEFDDVNDSYWTDRVVQNCGEEQPLQNNQSVTV QDPEKSSKPARRSYTRKRKSSVDHDMTPGVPPEDIEKRKHEPAELILIFAEGSPLPSEMN LNKMFRRFGPLKELETEVHQESSRARVVFKRGSDAEVAHSSVGKFNIFGSRQVTYELSYT PVISFKPMLLTVTPGLEGVI >FGENESH: 5 1 exon (s) 34787 - 34969 60 aa, chain - MFQLTTQNLHNSARACQDVVGFSHYRTATAFQRLSDTKDKQTLNSAIAFSLSNKFTSFFP >FGENESH: 6 2 exon (s) 36172 - 36666 27 aa, chain + MAISCGIFFDCSCLGWRNREILLQRTF >FGENESH: 7 2 exon (s) 37518 - 38686 66 aa, chain + MKHDHKGHNRQHDMPDQASMVKLFKDMVPHPYHSSLYEHYKLNMSRTNDPWYLGLRLIFH ANNWYS >FGENESH: 8 1 exon (s) 43691 - 43939 82 aa, chain - MKVILHLEEDKYIMSPHTFISPLHNVLKLSYSIKNMTYKYINKHITIQSLGKNKVRKSIL RHDIKTRILFDTNLFMRQEIQI >FGENESH: 9 1 exon (s) 46522 - 46722 66 aa, chain - MNPFEFHCSRGEEDRLEFIEGILKITQIIDVTTVERINFVTYHLKGVAQFCNKQGKDDKV VCKGPG >FGENESH: 10 2 exon (s) 47390 - 47785 28 aa, chain + MGDTSETAGGGVELGDTMLDKSREENVR >FGENESH: 11 2 exon (s) 48345 - 48788 39 aa, chain + MSFYTPQAMRIFYKVHGEIYCCGGNYILGFMITRYVDML >FGENESH: 12 1 exon (s) 50376 - 50516 46 aa, chain - MQRNTPPIRDMTWIKSLTQPHFALQTVSLYSHIIGGILVYSAYLIH >FGENESH: 13 1 exon (s) 55740 - 55862 40 aa, chain - MIVIGVCQKGGKNHVLLVIVELRRKLGPLWVIMISSLDDI >FGENESH: 14 1 exon (s) 73297 - 73776 159 aa, chain + MDIIQHIFTSGQFSAKVWNFFEATAGIAQGSQTLQQHLQNWWSAKSNNKAHKLLLQATPI LICWSLWKNRCSVKYGGKTTNISWVKYAVYKDTYKMLSTTFNHIRWPAKWIELIQKYEGC IQDTKVSVVAWNKPTNKWIKINTDVMVLIIREELGLEAY >FGENESH: 15 2 exon (s) 73799 - 74184 72 aa, chain + MAFVAALGTRTNNKAEMEAAIFGLTWALELGYRNIVQELDSQLVSTSILLPTSTTQDSKS ILSNGLNGIAKF >FGENESH: 16 2 exon (s) 79028 - 79243 59 aa, chain - MDGFLKVENSSNLMWKYISKPDGLLSFKLINFCARFLQLIHGPTCHGLIFVFRIQEIEV >FGENESH: 17 2 exon (s) 115159 - 116622 98 aa, chain + MECDFQSNTKNNCSIWGSDLEFFHSIGYLLPTLNASLLSNKFDRHIIGAGHAPTTLVIIY DKVGDSQSISLSINRRKGLTDRRSREFPKGTSKKMLIK >FGENESH: 18 2 exon (s) 117416 - 117895 31 aa, chain + MGVKSVPPINITPLGKLQHLKDVWIHNRSII >FGENESH: 19 6 exon (s) 118099 - 121576 266 aa, chain - MGDTTLTKVFVGGLAWETPKEAMKEHFDKYGDILEAVIISDKITGRSKGYGFVTFKDAES AKKACEDATPIINGRRANCNLASLGARRSRPSPSITPPPPPPPQQGPNVVGARANSASPA SHVQWYYPQAAPPASPFHHHQPLPFYGYSPAYIATDMNYNHKVSYNGGGYVNGHFSQVYP GQAMMPVYHPYYQFHHQSQTMGLPAHIYSPTPAAPIPTLMSKPTSIPPTAASLNPDSCGK FNVGSEALPNKGNSVSKEPQTLGSYH >FGENESH: 20 1 exon (s) 127320 - 127349 9 aa, chain - MDQNGWGRF >FGENESH: 21 1 exon (s) 127716 - 127841 41 aa, chain + MTLNKLVNNSRHTLFMFFEISFGPVAFPFSSHLLDVSTLQI >FGENESH: 22 2 exon (s) 136994 - 137597 55 aa, chain - MDICLCVPLCACVGVGVYARMIEMYNYVLGILNMKKRARKEEMKARKEEEVLHGP >FGENESH: 23 2 exon (s) 138932 - 139899 112 aa, chain + MTSLKHKRTHHLVGQTREFEGQGYLKVFKPFIVELQRNYRSYFCYNRLKIDRYEGFQTFY RDCRNMRHMKRTIYFRRYGRKPRKWVQPAFCPSHLAGEYLSLEFLGQGNRES >FGENESH: 24 2 exon (s) 140482 - 141574 86 aa, chain + MAYTILRKILNKIRVYILSNTCTPNHIHILITLSLPLHLSPLSGKRPPPARCSFLNHQKH NSSLLFFSPQKPPRRKCRCKTIPPSL >FGENESH: 25 2 exon (s) 143366 - 143985 84 aa, chain - MHVLNWLNIDADKFYPNLNHRRFRWIYGKRSTIQLIREIIFFHPPLGTPTPFPSSVTQTC NIQIESEGAYHPNNSEGGSIDYHV