GeneSeqer. Version of March 12, 2006. Date run: Mon Aug 28 20:21:41 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-tuHEN/C04HBa0031H05/C04HBa0031H05.seq.screen ________________________________________________________________________________ Sequence 1: C04HBa0031H05.1, from 1 to 164164, both strands analyzed. ... started at: Mon Aug 28 20:44:22 2006 EST library file: /tmp/cxgn-bacpublish-resources-3dbHTT/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 6 HitsTableSize = 67 EST library file: /tmp/cxgn-bacpublish-resources-3dbHTT/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 7 ... matches indexed, elapsed seconds = 7 HitsTableSize = 31 ******************************************************************************** EST sequence 66 +strand 560 n (File: SGN-E331029+) 1 AAAAACACAC ACCACTACTG GCATTTTTGA ACTATTACAT GTTGACATCT GGGGTCCATA 61 TCAAACAACA ACTCATGATA ACTTCAAGTA TTTCATTACC TTAGTAGATG ACTTTAGTAA 121 ATCTACCTGG ACACAACTTC TAAGCTGTAA AAGCAATGCT TTCCATGTCC TTAAAGCCTT 181 TATACTCATG GTTGAGAACC AGTTCAGCAC CACTGTTAAA ACCATCAGAT CAGATAATGG 241 TTTGGAATTC ACTAGCAATG AAACCACTCT ATTTTTTCAA TCCAAAGGGA TCATCCATCA 301 GAAATCCTGC CCCTATACTC CTCAACAAAA TGGTGTGGTC GAAAGAAAGC ACAAATTTAT 361 TCTTGAAACA GCAAGGGCTC TACTTTTTCA GTCTAAACTC CCAGTGAAAT ATTGGAGTGA 421 ATGTAACTTG CTTCCACATA TCTTATAAAT AGACTACCTT CTTTTCCTCT CCACAATAAA 481 ACTCCATATG AAATTTTATA TAAACACAAA CCTATCTACT CTCACCTAAA GAGTTTTGGA 541 TGTTTATGTT ATCCTACTAC Predicted gene structure (within gDNA segment 242 to 3335): Exon 1 2156 2715 ( 560 n); cDNA 1 559 ( 559 n); score: 0.895 MATCH C04HBa0031H05.1+ SGN-E331029+ 0.895 560 1.000 C PGS_C04HBa0031H05.1+_SGN-E331029+ (2156 2715) Alignment (genomic DNA sequence = upper lines): AAAAACTCAC ACCACTACTA GTATTTTTGA ACTACTACAT GTTGATATTT CGGGTCCCTA 2215 |||||| ||| ||||||||| | |||||||| |||| ||||| ||||| || | |||||| || AAAAACACAC ACCACTACTG GCATTTTTGA ACTATTACAT GTTGACATCT GGGGTCCATA 60 TCAAACACCA ACTCATGACA ACTTTAAATA CTTCATTACC TTACTAGATG ACTTTAGCAA 2275 ||||||| || |||||||| | |||| || || ||||||||| ||| |||||| ||||||| || TCAAACAACA ACTCATGATA ACTTCAAGTA TTTCATTACC TTAGTAGATG ACTTTAGTAA 120 ATCTACTTGG ACACATCTTC TAAGTAGTAA AAGCAATGCT TTCCATATCC TTAAAGCTTT 2335 |||||| ||| ||||| |||| |||| |||| |||||||||| |||||| ||| ||||||| || ATCTACCTGG ACACAACTTC TAAGCTGTAA AAGCAATGCT TTCCATGTCC TTAAAGCCTT 180 TGTACTCATG GTTGAGAACC AGTTCAACAC CACTATTAAA ACCATCAGAT CAGATAATGG 2395 | |||||||| |||||||||| |||||| ||| |||| ||||| |||||||||| |||||||||| TATACTCATG GTTGAGAACC AGTTCAGCAC CACTGTTAAA ACCATCAGAT CAGATAATGG 240 ATTGGAATTC ACTAGCAATG AATCCACTTT AATTTTCCAA GCCAAAGTTA TTATTCATCA 2455 ||||||||| |||||||||| || ||||| | | |||| ||| |||||| | | || ||||| TTTGGAATTC ACTAGCAATG AAACCACTCT ATTTTTTCAA TCCAAAGGGA TCATCCATCA 300 GAAATCATGT CCTTATACTC CTCAACAAAA TGGAGTGGTA GAAAGAAAGC ACAAATATAT 2515 |||||| || || ||||||| |||||||||| ||| ||||| |||||||||| |||||| ||| GAAATCCTGC CCCTATACTC CTCAACAAAA TGGTGTGGTC GAAAGAAAGC ACAAATTTAT 360 TCTGAAAACA GCAAGGGCTC TTCTTTTTCA ATCTAAACTC CCAGTGAGAT ATTGGGGTGA 2575 ||| ||||| |||||||||| | |||||||| ||||||||| ||||||| || ||||| |||| TCTTGAAACA GCAAGGGCTC TACTTTTTCA GTCTAAACTC CCAGTGAAAT ATTGGAGTGA 420 ATGTATACTT ACTTCCACAT ATCTTATAAA TAGAATACCT TCTTCAACTC TCCACAATAA 2635 ||||| |||| ||||||||| |||||||||| |||| ||||| |||| ||| |||||||||| ATGTA-ACTT GCTTCCACAT ATCTTATAAA TAGACTACCT TCTTTTCCTC TCCACAATAA 479 AACTCCTTAT GAGATTTTAT ATAAACATAA ACCTCCATAC TCACACCTAA AGAGTTTTGG 2695 |||||| ||| || ||||||| ||||||| || |||| ||| || ||||||| |||||||||| AACTCCATAT GAAATTTTAT ATAAACACAA ACCTATCTAC TCTCACCTAA AGAGTTTTGG 539 ATGTTTATGT TATCCTACTA 2715 |||||||||| |||||||||| ATGTTTATGT TATCCTACTA 559 hqPGS_C04HBa0031H05.1+_SGN-E331029+ (2156 2715) ******************************************************************************** EST sequence 49 +strand 367 n (File: SGN-E332350+) 1 TTTTCTAATT TGGTTATGAA AATGGCATAT GTCAACACAA AATTAATTGA GGGCTCTGGA 61 AGAGCGACCT TATTACTACC TGGAGGGACA ATATTAAGCA TTGATAATGC ATTATATTGT 121 AGTAAGTCTC AAAGAAACTT ATTAAGTTTC AAAGTTATTC GCCAAAATGG CTATCATGTT 181 GAGACGGCTA ATGAAGGAAA GGTTGAATAC CTTTACATTA CTACAATTAA TGTTGAGAAG 241 AAAATTGTGC ATGAAAAATT ACCTGCATTT TCTTCTGGGT TGTACTATAC AAGTATAAGT 301 ACAGTTGAAT CACATGCCGT AGTAAACAAA AGGTTTACTA ATTTTAATGA TTTTATCATT 361 TGGCATG Predicted gene structure (within gDNA segment 7972 to 10544): Exon 1 8932 9258 ( 327 n); cDNA 37 367 ( 331 n); score: 0.835 MATCH C04HBa0031H05.1+ SGN-E332350+ 0.835 327 0.891 C PGS_C04HBa0031H05.1+_SGN-E332350+ (8932 9258) Alignment (genomic DNA sequence = upper lines): ACAAAATTAA TTGAGGGTTC TAAAAGAGAG -GCTTATTAC TACCTGGAGG AACATTATT- 8989 |||||||||| ||||||| || | ||||| | |||||||| |||||||||| ||| |||| ACAAAATTAA TTGAGGGCTC TGGAAGAGCG ACCTTATTAC TACCTGGAGG GACAATATTA 96 GGTACTCATA ATGCATTGTA TTGTAGTAAG TCTCATAGAA ACTTGTTAAA TTTCAAGGTT 9049 | | | ||| ||||||| || |||||||||| ||||| |||| |||| |||| |||||| ||| AGCATTGATA ATGCATTATA TTGTAGTAAG TCTCAAAGAA ACTTATTAAG TTTCAAAGTT 156 AAT-GCCAAA ATGGCTATCA TGTTGAGACT CTGAATGAAG AAAAGGTTGA ACACTTTTAT 9108 | | |||||| |||||||||| ||||||||| ||||||| ||||||||| | || |||| ATTCGCCAAA ATGGCTATCA TGTTGAGACG GCTAATGAAG GAAAGGTTGA ATACCTTTAC 216 ATTACTACAA TAAATGCTGA GAAAAAAATT GTGCATGAAA AATTATCTGC ACTTTCTTCT 9168 |||||||||| | |||| ||| ||| |||||| |||||||||| ||||| |||| | |||||||| ATTACTACAA TTAATGTTGA GAAGAAAATT GTGCATGAAA AATTACCTGC ATTTTCTTCT 276 GGGTTGTACT ATACAAATAC TGATACAATT GAATTACATG TCGTAGTAAA -TAAAGTTTT 9227 |||||||||| |||||| || |||| || |||| ||||| ||||||||| |||| ||| GGGTTGTACT ATACAAGTAT AAGTACAGTT GAATCACATG CCGTAGTAAA CAAAAGGTTT 336 ACTGATTCTA ATGATTTTAT AATTAGGCAT G 9258 ||| ||| || |||||||||| ||| ||||| | ACTAATTTTA ATGATTTTAT CATTTGGCAT G 367 hqPGS_C04HBa0031H05.1+_SGN-E332350+ (8932 9258) ******************************************************************************** EST sequence 45 -strand 759 n (File: SGN-E542175-) 1 GGAAGTCAAT ATGATGTTAC TATACTCATT TGGAAGGATC CAAAGCTAGG GAATTGGTGG 61 ATGGTGTTTG GTGACAACAC ACTAGTAGGT TATTGGCCTG CTGAGTTATT TACACACTTG 121 GCGGAGCGAG CTACAATGGT GGAGTGGGGC GGAGAGATCG TAAATTCACG GGCCAATGGA 181 GAACATACGT CTACACAAAT GGGCTCAGGC CATTTTGGTG ATGATGGATT TAGAAAAGCC 241 AGTTATTTCA GAAATCTTGA AATTGTGGAC TTTGATAACA GCCTAAGTTC AGCCCAAGAT 301 ATATCAATTT TGGCTGAGAA TACAAATTGC TATAACATCA AAAATGCTTA TAGCACTGAA 361 TGGGGTACAC ATTTTTATTA TGGTGGACCT GGTAGAAATC CCCAATGCAA CTAATATAAT 421 GATGATGAGG CAAAGTCTCC TTTAGCTAGT TATCACCAAA TTTGTTCTTT TATTATTTTT 481 ATTTACATCT TTTAATGCTA TTTCCAACTT TGTTTATGCT GATTAATTAC ACATTGTTTT 541 TTCTTCTTGT GTCTATGTTT TGTTTTGAGG GCGGAAAATG TATGTATTAT TAGTTAAATA 601 AGACAAATAG CATTAAACAG GGTAAGGAAA TAGCAAATAT TTAGTTGTAA TGGCTACTGG 661 TACAAAATTT GTGATCTTAT GTTTCTGAAT CTTATGAAAT GAATCAATTT GTTTTTACTA 721 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAGAAA Predicted gene structure (within gDNA segment 15103 to 12269): Exon 1 14493 14458 ( 36 n); cDNA 1 36 ( 36 n); score: 1.000 Intron 1 14457 13934 ( 524 n); Pd: 0.985 (s: 0), Pa: 0.998 (s: 1.00) Exon 2 13933 13250 ( 684 n); cDNA 37 720 ( 684 n); score: 0.994 PPA cDNA 721 759 MATCH C04HBa0031H05.1- SGN-E542175- 0.994 720 0.949 C PGS_C04HBa0031H05.1-_SGN-E542175- (14493 14458,13933 13250) Alignment (genomic DNA sequence = upper lines): GGAAGTCAAT ATGATGTTAC TATACTCATT TGGAAGGTCC CATTCTTAAT TCCCTTCTCT 14434 |||||||||| |||||||||| |||||||||| |||||| GGAAGTCAAT ATGATGTTAC TATACTCATT TGGAAG.... .......... .......... 36 CATTTTTGCA TTTTTAGCTA AACTTAATCT AGAAAATGGA ATACTAATCT ACCATACACT 14374 .......... .......... .......... .......... .......... .......... 36 TTTAAATAAC AATATGTTAG TAATTATTAC CATACTAGTG TATTTAGACA TTTACTTTTA 14314 .......... .......... .......... .......... .......... .......... 36 TTTGACCAAA CTTGTTTACT TAAAAGACAT TTTTCAATGA AGTATTTTTA GTAAGAAGTT 14254 .......... .......... .......... .......... .......... .......... 36 GATTTGTTGT GTATCACTAT GATGAAAGAA ATCAAGATGT GATGCAATGA ATAAGATTGC 14194 .......... .......... .......... .......... .......... .......... 36 TCCTTTCTCA ATCACCGGTC TTGATTTCGA ACCCTGGATA TGACAAAATC ATTGGTAGGA 14134 .......... .......... .......... .......... .......... .......... 36 AGCGCTTTCG TCCAAATGGA ATCCTATGCT ACACCAGATG AGAAACCAAA ACAAGAAAGA 14074 .......... .......... .......... .......... .......... .......... 36 AAACAAGTTA CCATTTTCAT TAATTTCCTT AGACCGAAAT TAATTTCAAA GCCTGGTTAA 14014 .......... .......... .......... .......... .......... .......... 36 AATATACAAA ATGTATATTT GTGTATACAA CATATAATAT AGATTTATGT ACAATATGTA 13954 .......... .......... .......... .......... .......... .......... 36 ATGTTTTTGT GTATATATAG GATCCAAAGC TAGGGAATTG GTGGATGGTG TTTGGTGACA 13894 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GATCCAAAGC TAGGGAATTG GTGGATGGTG TTTGGTGACA 76 ACACACTAGT AGGTTATTGG CCTGCTGAGT TATTTACACA CTTGGCGGAG CGAGCTACAA 13834 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACACTAGT AGGTTATTGG CCTGCTGAGT TATTTACACA CTTGGCGGAG CGAGCTACAA 136 TGGTGGAGTG GGGCGGAGAG ATCGTAAATT CACGGGCCAA TGGAGAACAT ACGTCTACAC 13774 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGGAGTG GGGCGGAGAG ATCGTAAATT CACGGGCCAA TGGAGAACAT ACGTCTACAC 196 AAATGGGCTC AGGCCATTTT GGTGATGATG GATTTAGAAA AGCCAGTTAT TTCAGAAATC 13714 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGGCTC AGGCCATTTT GGTGATGATG GATTTAGAAA AGCCAGTTAT TTCAGAAATC 256 TTGAAATTGT GGACTCTGAT AACAGCCTAA GTTCAGCCCA AGATATATCA ATCTTGGCTG 13654 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| || ||||||| TTGAAATTGT GGACTTTGAT AACAGCCTAA GTTCAGCCCA AGATATATCA ATTTTGGCTG 316 AGAATACAAA TTGCTATAAC ATCAAAAATG CTTATAGCAC TGAATGGGGT ACACATTTCT 13594 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | AGAATACAAA TTGCTATAAC ATCAAAAATG CTTATAGCAC TGAATGGGGT ACACATTTTT 376 ATTATGGTGG ACCTGGTAGA AATCCACAAT GCAACTAATA TAATGATGAT GAGGCAAAGT 13534 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| ATTATGGTGG ACCTGGTAGA AATCCCCAAT GCAACTAATA TAATGATGAT GAGGCAAAGT 436 CTCCTTTAGC TAGTTATCAC CAAATTTGTT CTTTTATTAT TTTTATTTAC ATCTTTTAAT 13474 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCTTTAGC TAGTTATCAC CAAATTTGTT CTTTTATTAT TTTTATTTAC ATCTTTTAAT 496 GCTATTTCCA ACTTTGTTTA TGCTGATTAA TTACACATTG TTTTTTCTTC TTGTGTCTAT 13414 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTATTTCCA ACTTTGTTTA TGCTGATTAA TTACACATTG TTTTTTCTTC TTGTGTCTAT 556 GTTTTGTTTT GAGGGCGGAA AATGTATGTA TTATTAGTTA AATAAGACAA ATAGCATTAA 13354 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTGTTTT GAGGGCGGAA AATGTATGTA TTATTAGTTA AATAAGACAA ATAGCATTAA 616 ACAGGGTAAG GAAATAGCAA ATATTTAGTT GTAATGGCTA CTGGTACAAA ATTTGTGATC 13294 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGGGTAAG GAAATAGCAA ATATTTAGTT GTAATGGCTA CTGGTACAAA ATTTGTGATC 676 TTATGTTTCT GAATCTTATG AAATGAATCA ATTTGTTTTT ACTA 13250 |||||||||| |||||||||| |||||||||| |||||||||| |||| TTATGTTTCT GAATCTTATG AAATGAATCA ATTTGTTTTT ACTA 720 hqPGS_C04HBa0031H05.1-_SGN-E542175- (14493 14458,13933 13250) ******************************************************************************** EST sequence 46 -strand 713 n (File: SGN-E542177-) 1 AGGGAATTGG TGGATGGTGT TTGGTGACAA CACACTAGTA GGTTATTGGC CTGCTGAGTT 61 ATTTACACAC TTGGCGGGAG CGAGCTACAA TGGTGGAGTG GGGCGGAGAA ATCTTAAATT 121 CACGGGCCAA TGGAGAACAT ACGTCTACAC AAATGGGCTC AGGCCATTTT GGTGATGATG 181 GATTTAGAAA AGCCAGTTAT TTCAGAAATC TTGAAATTGT GGACTCTGAT AACAGCCTAA 241 GTTCAGCCCA AGATATATCA ATTTTGGCTG AGAATACAAA TTGCTATAAC ATCAAAAATG 301 CTTATAGCAC TGAATGGGGT ACACATTTTT ATTATGGTGG ACCTGGTAGA AATCCCCAAT 361 GCAACTAATA TAATGATGAT GAGGCAAAGT CTCCTTTAGC TAGTTATCAC CAAATTTGTT 421 CTTTTATTAT TTTTATTTAC ATCTTTTAAT GCTATTTCCA ACTTTGTTTA TGCTGATTAA 481 TTACACATTG TTTTTTCTTC TTGGGTCTAT GTTTTGTTTT GAGGGCGGAA AATGTATGTA 541 TTATTAGTTA AATAAGACAA ATAGCATTAA ACAGGGTAAG GAAATAGCAA ATATTTAGTT 601 GTAATGGCTA CTGGTACAAA ATTTGTGATC TTATGTTTCT GAATCTTATG AAATGAATCA 661 ATTTGTTTTT TCTAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 14532 to 12224): Exon 1 13922 13250 ( 673 n); cDNA 1 674 ( 674 n); score: 0.986 PPA cDNA 675 713 MATCH C04HBa0031H05.1- SGN-E542177- 0.986 673 0.944 C PGS_C04HBa0031H05.1-_SGN-E542177- (13922 13250) Alignment (genomic DNA sequence = upper lines): AGGGAATTGG TGGATGGTGT TTGGTGACAA CACACTAGTA GGTTATTGGC CTGCTGAGTT 13863 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGAATTGG TGGATGGTGT TTGGTGACAA CACACTAGTA GGTTATTGGC CTGCTGAGTT 60 ATTTACACAC TTGGC-GGAG CGAGCTACAA TGGTGGAGTG GGGCGGAGAG ATCGTAAATT 13804 |||||||||| ||||| |||| |||||||||| |||||||||| ||||||||| ||| |||||| ATTTACACAC TTGGCGGGAG CGAGCTACAA TGGTGGAGTG GGGCGGAGAA ATCTTAAATT 120 CACGGGCCAA TGGAGAACAT ACGTCTACAC AAATGGGCTC AGGCCATTTT GGTGATGATG 13744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACGGGCCAA TGGAGAACAT ACGTCTACAC AAATGGGCTC AGGCCATTTT GGTGATGATG 180 GATTTAGAAA AGCCAGTTAT TTCAGAAATC TTGAAATTGT GGACTCTGAT AACAGCCTAA 13684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTAGAAA AGCCAGTTAT TTCAGAAATC TTGAAATTGT GGACTCTGAT AACAGCCTAA 240 GTTCAGCCCA AGATATATCA ATCTTGGCTG AGAATACAAA TTGCTATAAC ATCAAAAATG 13624 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| GTTCAGCCCA AGATATATCA ATTTTGGCTG AGAATACAAA TTGCTATAAC ATCAAAAATG 300 CTTATAGCAC TGAATGGGGT ACACATTTCT ATTATGGTGG ACCTGGTAGA AATCCACAAT 13564 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| ||||| |||| CTTATAGCAC TGAATGGGGT ACACATTTTT ATTATGGTGG ACCTGGTAGA AATCCCCAAT 360 GCAACTAATA TAATGATGAT GAGGCAAAGT CTCCTTTAGC TAGTTATCAC CAAATTTGTT 13504 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACTAATA TAATGATGAT GAGGCAAAGT CTCCTTTAGC TAGTTATCAC CAAATTTGTT 420 CTTTTATTAT TTTTATTTAC ATCTTTTAAT GCTATTTCCA ACTTTGTTTA TGCTGATTAA 13444 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTATTAT TTTTATTTAC ATCTTTTAAT GCTATTTCCA ACTTTGTTTA TGCTGATTAA 480 TTACACATTG TTTTTTCTTC TTGTGTCTAT GTTTTGTTTT GAGGGCGGAA AATGTATGTA 13384 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| TTACACATTG TTTTTTCTTC TTGGGTCTAT GTTTTGTTTT GAGGGCGGAA AATGTATGTA 540 TTATTAGTTA AATAAGACAA ATAGCATTAA ACAGGGTAAG GAAATAGCAA ATATTTAGTT 13324 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTAGTTA AATAAGACAA ATAGCATTAA ACAGGGTAAG GAAATAGCAA ATATTTAGTT 600 GTAATGGCTA CTGGTACAAA ATTTGTGATC TTATGTTTCT GAATCTTATG AAATGAATCA 13264 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATGGCTA CTGGTACAAA ATTTGTGATC TTATGTTTCT GAATCTTATG AAATGAATCA 660 ATTTGTTTTT ACTA 13250 |||||||||| ||| ATTTGTTTTT TCTA 674 hqPGS_C04HBa0031H05.1-_SGN-E542177- (13922 13250) ******************************************************************************** EST sequence 82 +strand 779 n (File: SGN-E542178+) 1 ATATTGAAGG AGAGATTAAG TAAGGTGTAA ACCAATAATA AAAGAAAGTG GGGATAGGTT 61 TTATTACTCT ATTTTTCTGC CCCATAGTAT TAACTCCCTT TTCCATCATT GTAAAAACAA 121 TGTATTGACT GTCCATTTTT ATTTATATGA TGCTGCTCTC CTCTCAATCA TCATGAATCT 181 CAACCACCTC TTTTCCTATG CATTTACTAC ATTTATGTGT TTAAAACACT TTTCTTTTTT 241 TCTACTAATG GTGCTCTAGT CTCTTTTTTT CTCTTTCCTT TTCTTTGGCA CTGAATGAAA 301 TATGGTTAAA ATTAAGAAGA AAGATCAAAG TTTTCTAGTC TTGACTTTGT GTTTGTTCTT 361 TGTTATGTGT GAAGCACATA ATTTGAACTA CACAAAGTAT AAACAAGTTA GCAATATGAG 421 ACTTGAAAGG ATTCAAAGGC ATTTGGATAG AATCAACAAG CCTCCTCTCT TCACTATTCA 481 GAGCCCGGAT GGAGATATCA TAGATTGTGT TCATAAAAGA AAACAACCAG CTTTCGATCA 541 TCCTTTGCTC AAGAATCACA AGATTCAGAA GATTCCACCA GAGATTCCAA AACTGAAAAC 601 GTCTGTGAAA ACAGACGCGA TGATGAGTAG AGACGTTGTA AGTAACAATA GCAAAAGTGC 661 AGTGATAGAT TGGCAATTAT GGCNACAAAA CGGAACGCGG TGCCCTGCAG GCACTGTCCC 721 GATACGACNG AGTGAGGGTC ATGATGTGCT TAGAGCAAAG TCATTGTATG ATTTTGGTA Predicted gene structure (within gDNA segment 23542 to 20924): Exon 1 22942 22462 ( 481 n); cDNA 1 481 ( 481 n); score: 1.000 Intron 1 22461 22385 ( 77 n); Pd: 1.000 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 2 22384 22298 ( 87 n); cDNA 482 568 ( 87 n); score: 1.000 Intron 2 22297 21745 ( 553 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 21744 21534 ( 211 n); cDNA 569 779 ( 211 n); score: 0.981 MATCH C04HBa0031H05.1- SGN-E542178+ 0.995 779 1.000 C PGS_C04HBa0031H05.1-_SGN-E542178+ (22942 22462,22384 22298,21744 21534) Alignment (genomic DNA sequence = upper lines): ATATTGAAGG AGAGATTAAG TAAGGTGTAA ACCAATAATA AAAGAAAGTG GGGATAGGTT 22883 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTGAAGG AGAGATTAAG TAAGGTGTAA ACCAATAATA AAAGAAAGTG GGGATAGGTT 60 TTATTACTCT ATTTTTCTGC CCCATAGTAT TAACTCCCTT TTCCATCATT GTAAAAACAA 22823 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTACTCT ATTTTTCTGC CCCATAGTAT TAACTCCCTT TTCCATCATT GTAAAAACAA 120 TGTATTGACT GTCCATTTTT ATTTATATGA TGCTGCTCTC CTCTCAATCA TCATGAATCT 22763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTATTGACT GTCCATTTTT ATTTATATGA TGCTGCTCTC CTCTCAATCA TCATGAATCT 180 CAACCACCTC TTTTCCTATG CATTTACTAC ATTTATGTGT TTAAAACACT TTTCTTTTTT 22703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCACCTC TTTTCCTATG CATTTACTAC ATTTATGTGT TTAAAACACT TTTCTTTTTT 240 TCTACTAATG GTGCTCTAGT CTCTTTTTTT CTCTTTCCTT TTCTTTGGCA CTGAATGAAA 22643 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTACTAATG GTGCTCTAGT CTCTTTTTTT CTCTTTCCTT TTCTTTGGCA CTGAATGAAA 300 TATGGTTAAA ATTAAGAAGA AAGATCAAAG TTTTCTAGTC TTGACTTTGT GTTTGTTCTT 22583 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGGTTAAA ATTAAGAAGA AAGATCAAAG TTTTCTAGTC TTGACTTTGT GTTTGTTCTT 360 TGTTATGTGT GAAGCACATA ATTTGAACTA CACAAAGTAT AAACAAGTTA GCAATATGAG 22523 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTATGTGT GAAGCACATA ATTTGAACTA CACAAAGTAT AAACAAGTTA GCAATATGAG 420 ACTTGAAAGG ATTCAAAGGC ATTTGGATAG AATCAACAAG CCTCCTCTCT TCACTATTCA 22463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTGAAAGG ATTCAAAGGC ATTTGGATAG AATCAACAAG CCTCCTCTCT TCACTATTCA 480 GGTACATAAA TTATGTTGTA TTCATTAAAT CATTTTGATA TATGTCTTTC TTTTAACGAA 22403 | G......... .......... .......... .......... .......... .......... 481 AATGAAATTG ATATATAGAG CCCGGATGGA GATATCATAG ATTGTGTTCA TAAAAGAAAA 22343 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AG CCCGGATGGA GATATCATAG ATTGTGTTCA TAAAAGAAAA 523 CAACCAGCTT TCGATCATCC TTTGCTCAAG AATCACAAGA TTCAGGTATA GACTACTTTA 22283 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CAACCAGCTT TCGATCATCC TTTGCTCAAG AATCACAAGA TTCAG..... .......... 568 ATTTCTTCTT TCTTTTTTTT CGCCTTTTGT GCCAATGAGA TATAGTAATA AATTAAATAT 22223 .......... .......... .......... .......... .......... .......... 568 ATCAAGTTGC AACCCCCTAC CTCCTTCTTT ATGAAATTTG TTGCTAGCTC ATTTACAGTT 22163 .......... .......... .......... .......... .......... .......... 568 AAGTACGATC ACGAACCAAC TACATGTTTG TTGCTTTGGA ATTAAAGGTT GCAAATAGTC 22103 .......... .......... .......... .......... .......... .......... 568 ATATAACAAA CTATTTATAT CTCATATTTT ATCGCGAGTT TTAAGACAGA AATGATGTTC 22043 .......... .......... .......... .......... .......... .......... 568 TATAAGCTCT GAATGAAAGA AAATAACTTT ACAATAATTG AAATAACATT TGTAATGAGT 21983 .......... .......... .......... .......... .......... .......... 568 CTATAAAAAG CTCTCTCTTT TTTGAAAAAA AACAAATCCA AAATTAAAAG ATGTGGTGCT 21923 .......... .......... .......... .......... .......... .......... 568 ATAATAATAA TAACTATTAT AATAATGATA ATATTAGGAT TTCAACTACC AACTACCCTT 21863 .......... .......... .......... .......... .......... .......... 568 ACTTTCACTT TAGTTTTTCG TCTTTTCTTT TCTTTTACTC ACAAGCAACA AGTTACTAAT 21803 .......... .......... .......... .......... .......... .......... 568 CATCATAAAT TTTTATTATT TTTTAACTTC TAAATCATTG CAATGTACTC AATTACAGAA 21743 || .......... .......... .......... .......... .......... ........AA 570 GATTCCACCA GAGATTCCAA AACTGAAAAC GTCTGTGAAA ACAGACGCGA TGATGAGTAG 21683 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCCACCA GAGATTCCAA AACTGAAAAC GTCTGTGAAA ACAGACGCGA TGATGAGTAG 630 AGACGTTGTA AGTAACAATA GCAAAAGTGC AGTGATAGAT TGGCAATTAT GGCACCAAAA 21623 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ||||| AGACGTTGTA AGTAACAATA GCAAAAGTGC AGTGATAGAT TGGCAATTAT GGCNACAAAA 690 CGGAACGCGG TGCCCTGCAG GCACTGTCCC GATACGACGG AGTGAGGTTC ATGATGTGCT 21563 |||||||||| |||||||||| |||||||||| |||||||| | ||||||| || |||||||||| CGGAACGCGG TGCCCTGCAG GCACTGTCCC GATACGACNG AGTGAGGGTC ATGATGTGCT 750 TAGAGCAAAG TCATTGTATG ATTTTGGTA 21534 |||||||||| |||||||||| ||||||||| TAGAGCAAAG TCATTGTATG ATTTTGGTA 779 hqPGS_C04HBa0031H05.1-_SGN-E542178+ (22942 22462,22384 22298,21744 21534) ******************************************************************************** EST sequence 83 +strand 751 n (File: SGN-E542179+) 1 ATATTGAAGG AGAGATTAAG TAAGGTGTAA ACCAATAATA AAAGAAAGTG GGGATAGGTT 61 TTATTACTCT ATTTTTCTGC CCCATAGTAT TAACTCCCTT TTCCATCATT GTAAAAACAA 121 TGTATTGACT GTCCATTTTT ATTTATATGA TGCTGCTCTC CTCTCAATCA TCATGAATCT 181 CAACCACCTC TTTTCCTATG CATTTACTAC ATTTATGTGT TTAAAACACT TTTCTTTTTT 241 TCTACTAATG GTGCTCTAGT CTCTTTTTTT CTCTTTCCTT TTCTTTGGCA CTGAATGAAA 301 TATGGTTAAA ATTAAGAAGA AAGATCAAAG TTTTCTAGTC TTGACTTTGT GTTTGTTCTT 361 TGTTATGTGT GAAGCACATA ATTTGAACTA CACAAAGTAT AAACAAGTTA GCAATATGAG 421 ACTTGAAAGG ATTCAAAGGC ATTTGGATAG AATCAACAAG CCTCCTCTCT TCACTATTCA 481 GAGCCCGGAT GGAGATATCA TAGATTGTGT TCATAAAAGA AAACAACCAG CTTTCGATCA 541 TCCTTTGCTC AAGAATCACA AGATTCAGAA GATTCCACCA GAGATTCCAA AACTGAAAAC 601 GTCTGTGAAA ACAGACGCGA TGATGAGTAG AGACGTTGTA AGTAACAATA GCAAAAGTGC 661 AGTGATAGAT TGGCAATTAT GGCACCAAAA CGGAACGCGG TGCCCTGCAN GCACTGTCCC 721 GATACGACGG AGTGAGGTTC ATGATGTGCT T Predicted gene structure (within gDNA segment 23542 to 20952): Exon 1 22942 22462 ( 481 n); cDNA 1 481 ( 481 n); score: 1.000 Intron 1 22461 22385 ( 77 n); Pd: 1.000 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 2 22384 22298 ( 87 n); cDNA 482 568 ( 87 n); score: 1.000 Intron 2 22297 21745 ( 553 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 21744 21562 ( 183 n); cDNA 569 751 ( 183 n); score: 0.995 MATCH C04HBa0031H05.1- SGN-E542179+ 0.999 751 1.000 C PGS_C04HBa0031H05.1-_SGN-E542179+ (22942 22462,22384 22298,21744 21562) Alignment (genomic DNA sequence = upper lines): ATATTGAAGG AGAGATTAAG TAAGGTGTAA ACCAATAATA AAAGAAAGTG GGGATAGGTT 22883 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTGAAGG AGAGATTAAG TAAGGTGTAA ACCAATAATA AAAGAAAGTG GGGATAGGTT 60 TTATTACTCT ATTTTTCTGC CCCATAGTAT TAACTCCCTT TTCCATCATT GTAAAAACAA 22823 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTACTCT ATTTTTCTGC CCCATAGTAT TAACTCCCTT TTCCATCATT GTAAAAACAA 120 TGTATTGACT GTCCATTTTT ATTTATATGA TGCTGCTCTC CTCTCAATCA TCATGAATCT 22763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTATTGACT GTCCATTTTT ATTTATATGA TGCTGCTCTC CTCTCAATCA TCATGAATCT 180 CAACCACCTC TTTTCCTATG CATTTACTAC ATTTATGTGT TTAAAACACT TTTCTTTTTT 22703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCACCTC TTTTCCTATG CATTTACTAC ATTTATGTGT TTAAAACACT TTTCTTTTTT 240 TCTACTAATG GTGCTCTAGT CTCTTTTTTT CTCTTTCCTT TTCTTTGGCA CTGAATGAAA 22643 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTACTAATG GTGCTCTAGT CTCTTTTTTT CTCTTTCCTT TTCTTTGGCA CTGAATGAAA 300 TATGGTTAAA ATTAAGAAGA AAGATCAAAG TTTTCTAGTC TTGACTTTGT GTTTGTTCTT 22583 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGGTTAAA ATTAAGAAGA AAGATCAAAG TTTTCTAGTC TTGACTTTGT GTTTGTTCTT 360 TGTTATGTGT GAAGCACATA ATTTGAACTA CACAAAGTAT AAACAAGTTA GCAATATGAG 22523 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTATGTGT GAAGCACATA ATTTGAACTA CACAAAGTAT AAACAAGTTA GCAATATGAG 420 ACTTGAAAGG ATTCAAAGGC ATTTGGATAG AATCAACAAG CCTCCTCTCT TCACTATTCA 22463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTGAAAGG ATTCAAAGGC ATTTGGATAG AATCAACAAG CCTCCTCTCT TCACTATTCA 480 GGTACATAAA TTATGTTGTA TTCATTAAAT CATTTTGATA TATGTCTTTC TTTTAACGAA 22403 | G......... .......... .......... .......... .......... .......... 481 AATGAAATTG ATATATAGAG CCCGGATGGA GATATCATAG ATTGTGTTCA TAAAAGAAAA 22343 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AG CCCGGATGGA GATATCATAG ATTGTGTTCA TAAAAGAAAA 523 CAACCAGCTT TCGATCATCC TTTGCTCAAG AATCACAAGA TTCAGGTATA GACTACTTTA 22283 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CAACCAGCTT TCGATCATCC TTTGCTCAAG AATCACAAGA TTCAG..... .......... 568 ATTTCTTCTT TCTTTTTTTT CGCCTTTTGT GCCAATGAGA TATAGTAATA AATTAAATAT 22223 .......... .......... .......... .......... .......... .......... 568 ATCAAGTTGC AACCCCCTAC CTCCTTCTTT ATGAAATTTG TTGCTAGCTC ATTTACAGTT 22163 .......... .......... .......... .......... .......... .......... 568 AAGTACGATC ACGAACCAAC TACATGTTTG TTGCTTTGGA ATTAAAGGTT GCAAATAGTC 22103 .......... .......... .......... .......... .......... .......... 568 ATATAACAAA CTATTTATAT CTCATATTTT ATCGCGAGTT TTAAGACAGA AATGATGTTC 22043 .......... .......... .......... .......... .......... .......... 568 TATAAGCTCT GAATGAAAGA AAATAACTTT ACAATAATTG AAATAACATT TGTAATGAGT 21983 .......... .......... .......... .......... .......... .......... 568 CTATAAAAAG CTCTCTCTTT TTTGAAAAAA AACAAATCCA AAATTAAAAG ATGTGGTGCT 21923 .......... .......... .......... .......... .......... .......... 568 ATAATAATAA TAACTATTAT AATAATGATA ATATTAGGAT TTCAACTACC AACTACCCTT 21863 .......... .......... .......... .......... .......... .......... 568 ACTTTCACTT TAGTTTTTCG TCTTTTCTTT TCTTTTACTC ACAAGCAACA AGTTACTAAT 21803 .......... .......... .......... .......... .......... .......... 568 CATCATAAAT TTTTATTATT TTTTAACTTC TAAATCATTG CAATGTACTC AATTACAGAA 21743 || .......... .......... .......... .......... .......... ........AA 570 GATTCCACCA GAGATTCCAA AACTGAAAAC GTCTGTGAAA ACAGACGCGA TGATGAGTAG 21683 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCCACCA GAGATTCCAA AACTGAAAAC GTCTGTGAAA ACAGACGCGA TGATGAGTAG 630 AGACGTTGTA AGTAACAATA GCAAAAGTGC AGTGATAGAT TGGCAATTAT GGCACCAAAA 21623 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACGTTGTA AGTAACAATA GCAAAAGTGC AGTGATAGAT TGGCAATTAT GGCACCAAAA 690 CGGAACGCGG TGCCCTGCAG GCACTGTCCC GATACGACGG AGTGAGGTTC ATGATGTGCT 21563 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAACGCGG TGCCCTGCAN GCACTGTCCC GATACGACGG AGTGAGGTTC ATGATGTGCT 750 T 21562 | T 751 hqPGS_C04HBa0031H05.1-_SGN-E542179+ (22942 22462,22384 22298,21744 21562) ******************************************************************************** EST sequence 88 +strand 478 n (File: SGN-E300061+) 1 TATTGAAGGA GAGATTAAGT AAGGTGTAAA CCAATAATAA AAGAAAGTGG GGATAGGTTT 61 TATTACTCTA TTTTTCTGCC CCATAGTATT AACTCCCTTT TCCATCATTG TAAAAACAAT 121 GTATTGACTG TCCATTTTTA TTTATATGAT GCTGCTCTCC TCTCAATCAT CATGAATCTC 181 AACCACCTCT TTTCCTATGC ATTTACTACA TTTATGTGTT TAAAACACTT TTCTTTTTTT 241 CTACTAATGG TGCTCTAGTC TCTTTTTTTC TCTTTCCTTT TCTTTGGCAC TGAATGAAAT 301 ATGGTTAAAA TTAAGAAGAA AGATCAAAGT TTTCTAGTCT TGACTTTGTG TTTGTTCTTT 361 GTTATGTGTG AAGCACATAA TTTGAACTAC ACAAAGTATA AACAAGTTAG CAATATGAGA 421 CTTGAAAGGA TTCAAAGGCA TTTGGATAGA ATCAACAAGC CTCCTCTCTT CACTATTC Predicted gene structure (within gDNA segment 23541 to 21854): Exon 1 22941 22464 ( 478 n); cDNA 1 478 ( 478 n); score: 1.000 MATCH C04HBa0031H05.1- SGN-E300061+ 1.000 478 1.000 C PGS_C04HBa0031H05.1-_SGN-E300061+ (22941 22464) Alignment (genomic DNA sequence = upper lines): TATTGAAGGA GAGATTAAGT AAGGTGTAAA CCAATAATAA AAGAAAGTGG GGATAGGTTT 22882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGAAGGA GAGATTAAGT AAGGTGTAAA CCAATAATAA AAGAAAGTGG GGATAGGTTT 60 TATTACTCTA TTTTTCTGCC CCATAGTATT AACTCCCTTT TCCATCATTG TAAAAACAAT 22822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTACTCTA TTTTTCTGCC CCATAGTATT AACTCCCTTT TCCATCATTG TAAAAACAAT 120 GTATTGACTG TCCATTTTTA TTTATATGAT GCTGCTCTCC TCTCAATCAT CATGAATCTC 22762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTGACTG TCCATTTTTA TTTATATGAT GCTGCTCTCC TCTCAATCAT CATGAATCTC 180 AACCACCTCT TTTCCTATGC ATTTACTACA TTTATGTGTT TAAAACACTT TTCTTTTTTT 22702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCACCTCT TTTCCTATGC ATTTACTACA TTTATGTGTT TAAAACACTT TTCTTTTTTT 240 CTACTAATGG TGCTCTAGTC TCTTTTTTTC TCTTTCCTTT TCTTTGGCAC TGAATGAAAT 22642 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTAATGG TGCTCTAGTC TCTTTTTTTC TCTTTCCTTT TCTTTGGCAC TGAATGAAAT 300 ATGGTTAAAA TTAAGAAGAA AGATCAAAGT TTTCTAGTCT TGACTTTGTG TTTGTTCTTT 22582 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTTAAAA TTAAGAAGAA AGATCAAAGT TTTCTAGTCT TGACTTTGTG TTTGTTCTTT 360 GTTATGTGTG AAGCACATAA TTTGAACTAC ACAAAGTATA AACAAGTTAG CAATATGAGA 22522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATGTGTG AAGCACATAA TTTGAACTAC ACAAAGTATA AACAAGTTAG CAATATGAGA 420 CTTGAAAGGA TTCAAAGGCA TTTGGATAGA ATCAACAAGC CTCCTCTCTT CACTATTC 22464 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CTTGAAAGGA TTCAAAGGCA TTTGGATAGA ATCAACAAGC CTCCTCTCTT CACTATTC 478 hqPGS_C04HBa0031H05.1-_SGN-E300061+ (22941 22464) ******************************************************************************** EST sequence 26 -strand 482 n (File: SGN-E203450-) 1 CATTAAATTT TTTAAAATAA AATAATTTTT TTAAAAAATA AATAAAGTAT ANAACGTTAC 61 TGTGAACCAC GTTTATACTA GTTTTGTAAA CAAAATTAAA AACATACTAT TTTGATGAAT 121 TGATTTATAA AATGACTTAT TTTGGTCAAA AATTCCAGAT TTTTATGAAA TGATATTTTG 181 TACAACTGTA CAAGTACAAG GTGTAGTAGC TTAATATAAT TAAAGCACCT TTTATTGTCT 241 ATTGCTTCAA AGAGAGAGGC TATAGCTATG AAGCAGGGGC GGACCCAGTA AGCCAGACGC 301 GGGTGCTCGA GCACCCATTG ATTTCCGAAA TTTTATATAT ATATATATGT ATATATATAT 361 ATAGAAAATA TGATACATAT ATTATTATAA TTTAAACGAG CAGCCATAGA ACAAAAGCAG 421 TTGTGGGTGA GCTGGTTTAA ACCTCCTCAA TAAGAGGCGT GCGCACCAAC AAGCGAGGGT 481 TT Predicted gene structure (within gDNA segment 45450 to 39829): Exon 1 44500 44371 ( 130 n); cDNA 35 163 ( 129 n); score: 0.908 Intron 1 44370 42984 (1387 n); Pd: 0.000 (s: 0.84), Pa: 0.783 (s: 0.58) Exon 2 42983 42935 ( 49 n); cDNA 164 210 ( 47 n); score: 0.582 Intron 2 42934 41824 (1111 n); Pd: 0.000 (s: 0.58), Pa: 0.000 (s: 0) Exon 3 41823 41791 ( 33 n); cDNA 211 243 ( 33 n); score: 0.758 Intron 3 41790 40537 (1254 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 4 40536 40508 ( 29 n); cDNA 244 272 ( 29 n); score: 0.655 MATCH C04HBa0031H05.1- SGN-E203450- 0.908 241 0.500 C PGS_C04HBa0031H05.1-_SGN-E203450- (44500 44371,42983 42935,41823 41791,40536 40508) Alignment (genomic DNA sequence = upper lines): AAAATAAATA AAGTATAAAA CATTACTGTG AACCACGTTT ATACTAGTTT TGTAAAAAAA 44441 |||||||||| ||||||| || | |||||||| |||||||||| |||||||||| |||||| ||| AAAATAAATA AAGTATANAA CGTTACTGTG AACCACGTTT ATACTAGTTT TGTAAACAAA 94 ATTAAAAACA TACTATTTTT GAGAATTGAT TTATAGAATG ACTTATTTTG GTTAAAAACT 44381 |||||||||| ||||||||| |||||||| ||||| |||| |||||||||| || ||||| | ATTAAAAACA TACTATTTTG ATGAATTGAT TTATAAAATG ACTTATTTTG GTCAAAAATT 154 CGTGCATTTT AGTGAGGATA GCTAAATTAC GCGACTTTCA GGAAATGCCT TCTAGCTCAG 44321 | | ||||| CCAG-ATTTT .......... .......... .......... .......... .......... 163 CGAAAACGCC GGTAATGGTG ATGCCGGTAG AGGGTTTGTG TAGTAAATGC CTTCCAATTA 44261 .......... .......... .......... .......... .......... .......... 163 CTTTTTGGGA GCTATCTCTC TCCTCTTTTT AGCTCCGTCC CAGAAGAGAG GGAAAAACCA 44201 .......... .......... .......... .......... .......... .......... 163 GTGAAAATTC CTCAGGCATC AATCTTTCAT GATTTGGGTC GAGTGGGTAC TTCTCCGTCA 44141 .......... .......... .......... .......... .......... .......... 163 GTAGAGCGAC TTCAGTTCTC TACGATGACT TCAACAACTA AAACACCGGA GGTGAAACCT 44081 .......... .......... .......... .......... .......... .......... 163 GTTTTCAAGA AGAATATTCT AACTCAGAGG GGGAAAACAC CTTAATACAT TGCCCCGAGT 44021 .......... .......... .......... .......... .......... .......... 163 TCTTGTCAAG GGAAGCGAGT AGACATGCTC AATGAAGCAG ATCTCAAACC CCAAAAGAAC 43961 .......... .......... .......... .......... .......... .......... 163 TATTTGAAGA ATGCAATTAT AGGGTTTGTA AAGGGAGATA CCCCTAATTT GAAGAGAATG 43901 .......... .......... .......... .......... .......... .......... 163 GAACTCTACA TAGAAACTGT GTGGAGATTT GCTCAGAAAC CACAGACTCT CGCTCATGAT 43841 .......... .......... .......... .......... .......... .......... 163 GGTGGATACT TTATTTTTTA TTTGATTCAA AGGAAGTTTG TGAGAAAGTT CTGACGGGAG 43781 .......... .......... .......... .......... .......... .......... 163 GACCTTACAC GTGTCGGAAT AGGACTTTCA TGATTCAGGT CTGGAAACGT GATTTTGAAT 43721 .......... .......... .......... .......... .......... .......... 163 TCAATCCGGA CTGCATCACA ACTATTCCAT TGTTGGTCAC TTTACCCAAC TTGTTGGTAG 43661 .......... .......... .......... .......... .......... .......... 163 GTTTCTGGTC CAATGGCTCT TTAAGTAAAA TTACAAGTGC ACTCAGTAAA CCACGATATT 43601 .......... .......... .......... .......... .......... .......... 163 TCGATAAAAT AACAATGACT ATGGAACATA TCTCTTATGC TCACGGACTG GTGGAAGTTG 43541 .......... .......... .......... .......... .......... .......... 163 ATGTTAGCCA ACCTCTAATT GAATTTGTGG TAATAGCTTC ACCAGATGAT ATCTATGCGC 43481 .......... .......... .......... .......... .......... .......... 163 AACGTATAGA CTATGAATGG CGCTCATAAT TTTGTCATCA CTGCCTCAAG TTTGGGCACA 43421 .......... .......... .......... .......... .......... .......... 163 TTGAAGATCA GTGCCGCGCT AAAAAGAAAC AACCAGAAGA TGAATTTCAC CAAGTACCTC 43361 .......... .......... .......... .......... .......... .......... 163 GGCGGAGACG AAACAGAGGA AGGCGAGGTC AACAAAATAA TAACAAGAAA TTGTGGATTG 43301 .......... .......... .......... .......... .......... .......... 163 TTAGGCCTGT GGAGGAGCCC AAACCTCCAG TTTCTACAAA TCCAGAAGAC TCTTCTTATG 43241 .......... .......... .......... .......... .......... .......... 163 TGATGTAGAT GAACATTTAG GAAGAATACC AAACATCACA CAAACTTGAT GAAGTATCCA 43181 .......... .......... .......... .......... .......... .......... 163 CAAATAGGTG TGTATGCTTG ACTGAGTTGG TAAGTGAGGA AGACAGTGGT TAATAGAGGA 43121 .......... .......... .......... .......... .......... .......... 163 CCCAGGTATT TCTTCACAGT TCCTATGGTT ATTTCTACAT GGAATATATG GGGCTTGAAT 43061 .......... .......... .......... .......... .......... .......... 163 CAGCCCCAAA AGCAAAAAGA GGTGCAACTT ATTTTTCAGA AGAAAAATGT GGATGTTTTT 43001 .......... .......... .......... .......... .......... .......... 163 GGGTGTCTTG AAACTAGGAT GATGGATAAT AAAATCAACA ACTAT-CATT AACAAGGTTG 42942 || || || || | | ||| ||| | || |||||| || .......... .......TAT GA--AATGAT ATTTTGTACA ACTGTACAAG TACAAGG-TG 203 TACAAGGATG AAACACTAGA CATAATTACT CAATGGCCTA CAATGGGTGA ATTTGGTTGT 42882 || || TAGTAGC... .......... .......... .......... .......... .......... 210 GCTGGTGGCG ACATATTCGA GTACAGGTGC TCCAAATCAG TGACAAATTC ATTCATTGTA 42822 .......... .......... .......... .......... .......... .......... 210 AAGTGGAGAC TACTATTTTC ACTACAATGC ACACAATAAT TTATACAAAA AAATGAGGTA 42762 .......... .......... .......... .......... .......... .......... 210 CAATTGAGGA AATCTATATG GAGTGACTTA ATTCAGGAGT TAATACCTCA AATGGTCACT 42702 .......... .......... .......... .......... .......... .......... 210 CAACTATGCA CTTTTCTCTC AAAAAGTCAC TCAACTTTCA ATTTTCACTC AAAAGTCACT 42642 .......... .......... .......... .......... .......... .......... 210 CAACTATGCA CTTCTTTCTC AGAAAGTCAC TCAACTTTGA ATTTTAACTC AAAAGTCACT 42582 .......... .......... .......... .......... .......... .......... 210 CAACTATCTA CTCTTTCCTA AAAAAGTCAC TCAATCTATT AAAATATTTT TTTAATTAAA 42522 .......... .......... .......... .......... .......... .......... 210 ATTTATTAAT ATTAATTATT TATATAACAA ACCAAAATTT TAAAAAAATA AAAATACCAC 42462 .......... .......... .......... .......... .......... .......... 210 TTAAACCATT TAGTGATCCA CCCACCTAAC CCGATCCATT AAAAAATATA ATATGACCCA 42402 .......... .......... .......... .......... .......... .......... 210 TTTTATTTTG TCTTTAATCC TAATTCAAGG TTTAAAGAGA GGGATTAATT TAGGATTAAA 42342 .......... .......... .......... .......... .......... .......... 210 GACAAAATAA AATGGGTCAT CATATTTTTT AATGGGTCGG GTTAGGTGGG GGGATCACTA 42282 .......... .......... .......... .......... .......... .......... 210 AATGATTTAG TTTATTTTTT AAAATTTATG GTTTGTTATA TAAATAATTA ATATCAATAA 42222 .......... .......... .......... .......... .......... .......... 210 TATTTAATTA AAAAATAATT CAATAGATTG AGTACTTTTT GAGGAAAGAG TGGTAGTTGA 42162 .......... .......... .......... .......... .......... .......... 210 GTGACTTTTG AGTTAAAATT CAAAGTTAAG TGACTTTCTG AGAAAGAAGT GCATATTTGA 42102 .......... .......... .......... .......... .......... .......... 210 GTGACTTTTG AGTGAAAATT GAAAGTTCAG TGACTTTCTG AGAGAAGAGT GCATAGTTGA 42042 .......... .......... .......... .......... .......... .......... 210 GTGACCATCT GAGGTATTAA CTCCTTGATT CAGATAGGGA GGACCATTCA GGAACCATGG 41982 .......... .......... .......... .......... .......... .......... 210 CCTCTTAGTG GGGATTTTAA TGTTGTACTA GCAGTTGTTG TTATGATCTT ACCAGTATTT 41922 .......... .......... .......... .......... .......... .......... 210 ATAAATTTGT TTCACAGAAA GAAAATAGAC AGTAGTGTTT GAGAATTTTC TGGATTGATA 41862 .......... .......... .......... .......... .......... .......... 210 GAGTTCAAAT TGTTCTCGAT TACAAGATTA GAAAATGGTA AATCTAACTA AAACAACTTT 41802 | ||| ||| || || || |||| .......... .......... .......... ........TT AATATAATTA AAGCACCTTT 232 GAATCTCTAT TGTTGATTAA CCTGCCAATA GAAGAGAAAA GATATGAGAT TGAGAACGAA 41742 | | ||||| | TATTGTCTAT T......... .......... .......... .......... .......... 243 AAAGAAGGGA AGGAGATCGA AGAAGAAGAA GAAGCAGAAA AGGGGAGGGA AAGTTCACCA 41682 .......... .......... .......... .......... .......... .......... 243 GAAACTCGTT TCTTTCTCTC TCTCCTCTAA CCATCTTTTA TAACCGAATC CACGTGGCAA 41622 .......... .......... .......... .......... .......... .......... 243 AATCCGCACC TTCCGTTCTT ATTAAAATCC AACTGATCTT GGCCGTTTGT TTTTAATCTC 41562 .......... .......... .......... .......... .......... .......... 243 TGATTCTGTT TTTCGATATC GAATCTCCGC AGCTTCACTA TTTAATTTCC TTAGCTGAGA 41502 .......... .......... .......... .......... .......... .......... 243 TCATGACATA CCATCCTCCA TCAAACTATC CTAGACCTGA AGGATGAGAA TCAAAGTCTG 41442 .......... .......... .......... .......... .......... .......... 243 GAAATTTGGC GCGCAGAAAT TGATAATCTT CCCAGGTTGC ATCTTCTGGT GGAAGATTAG 41382 .......... .......... .......... .......... .......... .......... 243 ACCATTATAC TAACACTCGT ACAACAGCCA TATTATTTCT CTTTACCATT TGTCTTTGCA 41322 .......... .......... .......... .......... .......... .......... 243 AGATTGCCAC AGGCTTAACC AAAAACTGTC CATCACCACT CGTTGCAGGT AATTCAGATT 41262 .......... .......... .......... .......... .......... .......... 243 GCACCACGAC ACGATTGCCT ACTTTTCTCT TAAGTAGTGA CACATGAAAG ACTAGATGAA 41202 .......... .......... .......... .......... .......... .......... 243 TTTTAGAATG AGGAGGTAGC TCCAGTTGAT ACGCCACAGA ACCTATCCTG TCCGTGATCC 41142 .......... .......... .......... .......... .......... .......... 243 GGTAAGGTCC ATAGTACTTA GAGCTAAGCT TCAAGTTCTT CCTCAATGCA ATGGAAGTTT 41082 .......... .......... .......... .......... .......... .......... 243 GACGATAAGG TTGAAGCTTC AGATAAACTG AATTCCCCAC AGAAAATTCC CGATCAGTTC 41022 .......... .......... .......... .......... .......... .......... 243 TTCTATTATC AGCAAAGAAC TTTATCCGAG CTTGAGCAGT AGTCAAATTA TCATGAAGTA 40962 .......... .......... .......... .......... .......... .......... 243 ACTGCAGAAA TTGTTGTCGC TGCATGACTA CATCCTCTGC AGCTTGAACT ATTGTTTCCA 40902 .......... .......... .......... .......... .......... .......... 243 ATAATGGCCC AATGGACAAT TGAGGTGGAG TATAACCATA TAATGCTTCG AACAGAGTAC 40842 .......... .......... .......... .......... .......... .......... 243 AACGCAAACT GGTGTGGAAG TTAGTATTAT ACCACCACTC AGCAGCCAAA AACCACTGTT 40782 .......... .......... .......... .......... .......... .......... 243 TCCACTGGAT AGGTCTACTC GTAGTCATAC ACCTGAGATA ATTTTCCAAA CACCTGTTGA 40722 .......... .......... .......... .......... .......... .......... 243 CTCTCTCTGT TTGACCATCA CTTTGGGGAT GATAAGCCGA GCTATAATGA AGTTGAGTTC 40662 .......... .......... .......... .......... .......... .......... 243 CCAAAAGCTT AAACATGTCT TGCCAGAAGT TACTCAAAAA CACTTTGTCC CTGTCTATAA 40602 .......... .......... .......... .......... .......... .......... 243 CAATAGAATC AGGAATACCA TGTAAGTTAT GAATTTTTTT CCAGTACAAG TTGGCTACTG 40542 .......... .......... .......... .......... .......... .......... 243 TAGATGCTGT ATATGGATGG GATAGATCTA TGAA 40508 ||| | | || | | || | ||| |||| .....GCTTC AAAGAGAGAG GCTATAGCTA TGAA 272 hqPGS_C04HBa0031H05.1-_SGN-E203450- (44500 44371,42983 42935,41823 41791) ******************************************************************************** EST sequence 72 +strand 680 n (File: SGN-E379333+) 1 AATTTAGGCC AGCGAATTAT ACAATTGTAT ATGTATAGCA AATTATACAG TTTTATGTTT 61 GCTATGCAGC GCAATTATGC AAAGTTTGCT AGCATACAAA TATGAATTTT TTATTTGCTA 121 TATGTAAAAG TTGCCCAATA ATGTATCATG GACATATGAA AATAGTTCTT CCAAAATCAG 181 TTTATCTCCG AGTTAATACT TTAGATGGTC ATTCAACTAA TCTTTGTGCT CAAAACCCCG 241 ATTCAAATAG TCATTTGTTT GGTATCGCCG AAGGAGCGGG AACGGTCATT CTAACTCTTC 301 TCGGGGGATT CCACCCATAC TTTCTCTCAA AAAGTCACTC AACTTTCAAT TTTTCCTTAA 361 AAGTATTCAA TTATCCATAC ATTTCTCAAA AAGTGACTCA ACTTTGAATT TTAACTCAAA 421 AGTGACTCAA CTATTTATTT TTTCCTCAAG TCACTCAATC TATTAAATTA CTTTTTAAAT 481 TAAAATTTAT TTACGTTAAT TGTTTATATA ACAAATCAAA ATTTTTTAAA AAAATAAAAA 541 ATACTATTTA GTGATCCACC CACCTAACCC GACCCATTAA AAAATATAAT ATGAACCATT 601 TTATTTTACC CTTAATTCTA AATTATTCCC TCTCTTTCTC CTCTACATTT AATATATACA 661 CATAGCTTAT TTAATTCGAT Predicted gene structure (within gDNA segment 46489 to 40936): Exon 1 45596 45565 ( 32 n); cDNA 287 318 ( 32 n); score: 0.594 Intron 1 45564 42693 (2872 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.88) Exon 2 42692 42393 ( 300 n); cDNA 319 607 ( 289 n); score: 0.853 MATCH C04HBa0031H05.1- SGN-E379333+ 0.853 332 0.488 C PGS_C04HBa0031H05.1-_SGN-E379333+ (45596 45565,42692 42393) Alignment (genomic DNA sequence = upper lines): CATACTAAAT GTGCTAGAAT GATTATTAAC ATGTATACTT CAATGAAGTA TGTTGAATTG 45537 ||| |||| | | || | |||| | || CATTCTAACT CTTCTCGGGG GATTCCACCC AT........ .......... .......... 318 GTTGAATTAT TACATGAGAA AATGGGTACA GCTAGTTGAA AATATTCAAA TGGATATTTC 45477 .......... .......... .......... .......... .......... .......... 318 GGGAAAATAT CCTTGTTCAA TTCAAGGTAA CCATACAAGG TTCATTGAGT TTAAAATTGA 45417 .......... .......... .......... .......... .......... .......... 318 TGATGATCAA TCTTTGCTAC AATTTTTTGT TATACCTCAA AACTTTGCGG ATAAGATTGA 45357 .......... .......... .......... .......... .......... .......... 318 CATAAATGTT TTGGAAATGT ATGTAAAGAC CAAATCAACA AATCAAAATG ATATATTTCA 45297 .......... .......... .......... .......... .......... .......... 318 AATTAGTGGT CAACATGGTT ATCACATGAA TTTATTGTCT CAAGTAATAT ATAGTGGTTG 45237 .......... .......... .......... .......... .......... .......... 318 TATATTATGT TTACATGACA GAAGCAATCA ACTTCACATG AGCACAAGGA AGCAGTAAAC 45177 .......... .......... .......... .......... .......... .......... 318 TAGTGCTACC ACTAATATTT TACTAGTTAT CATAAAAAAG AGGAAAAACA GAACTAAAAT 45117 .......... .......... .......... .......... .......... .......... 318 GTCATTTTTC AACAAAAAGG AAAATAACAA ATTCATCAAC TATAAGATAA TCTAAATAAA 45057 .......... .......... .......... .......... .......... .......... 318 TGTATGACAA AATTACCTGA AATACAAAAA GCTCTTCTTT ATCAAAGTTT TGTTTACCTT 44997 .......... .......... .......... .......... .......... .......... 318 TTTAAAGCAA ATCTGCAGAC GTTTTCAAAG TTTCGAAATT TCACCTCCAA TCTTTTGCAG 44937 .......... .......... .......... .......... .......... .......... 318 TGTGTTTAAA CTACAATACT CGATCAACAC TCTCAAATCT CTTGTATAGA TCAAAACGAT 44877 .......... .......... .......... .......... .......... .......... 318 TTCAAATTGA GTAAAGATTG AGCATCAATT ATGGAAGAAC AAGAAGATGG TGGTCTTCCA 44817 .......... .......... .......... .......... .......... .......... 318 AATTCGTGCA CTCTTCAGAT ATAGCATTCA TCAACTTCAT TGTGCCTTTG GAGCGAGATT 44757 .......... .......... .......... .......... .......... .......... 318 TGATGCTAGT TCTCTGCTTA ATTTTATCCC CTGTAACTTG AAGGTAGGTT TGGAGAATGA 44697 .......... .......... .......... .......... .......... .......... 318 AGTGGGTTTT CTTGGAGGAT TTTCTTCCCT AATTTTAATA TAACTAAATT GGGATTTTTT 44637 .......... .......... .......... .......... .......... .......... 318 TGTTCTAGTG CAGGAGTAAA TTATATATGC TTAAAACGTT ATTCTCAATA ATGTATTAGA 44577 .......... .......... .......... .......... .......... .......... 318 GTTAAAACGT AATTTCCACT TACGTATTAT TATTTAACGT TGTTAGCAGT CCGTCCCTTT 44517 .......... .......... .......... .......... .......... .......... 318 TCTCATTAAA TTTTTTAAAA TAAATAAAGT ATAAAACATT ACTGTGAACC ACGTTTATAC 44457 .......... .......... .......... .......... .......... .......... 318 TAGTTTTGTA AAAAAAATTA AAAACATACT ATTTTTGAGA ATTGATTTAT AGAATGACTT 44397 .......... .......... .......... .......... .......... .......... 318 ATTTTGGTTA AAAACTCGTG CATTTTAGTG AGGATAGCTA AATTACGCGA CTTTCAGGAA 44337 .......... .......... .......... .......... .......... .......... 318 ATGCCTTCTA GCTCAGCGAA AACGCCGGTA ATGGTGATGC CGGTAGAGGG TTTGTGTAGT 44277 .......... .......... .......... .......... .......... .......... 318 AAATGCCTTC CAATTACTTT TTGGGAGCTA TCTCTCTCCT CTTTTTAGCT CCGTCCCAGA 44217 .......... .......... .......... .......... .......... .......... 318 AGAGAGGGAA AAACCAGTGA AAATTCCTCA GGCATCAATC TTTCATGATT TGGGTCGAGT 44157 .......... .......... .......... .......... .......... .......... 318 GGGTACTTCT CCGTCAGTAG AGCGACTTCA GTTCTCTACG ATGACTTCAA CAACTAAAAC 44097 .......... .......... .......... .......... .......... .......... 318 ACCGGAGGTG AAACCTGTTT TCAAGAAGAA TATTCTAACT CAGAGGGGGA AAACACCTTA 44037 .......... .......... .......... .......... .......... .......... 318 ATACATTGCC CCGAGTTCTT GTCAAGGGAA GCGAGTAGAC ATGCTCAATG AAGCAGATCT 43977 .......... .......... .......... .......... .......... .......... 318 CAAACCCCAA AAGAACTATT TGAAGAATGC AATTATAGGG TTTGTAAAGG GAGATACCCC 43917 .......... .......... .......... .......... .......... .......... 318 TAATTTGAAG AGAATGGAAC TCTACATAGA AACTGTGTGG AGATTTGCTC AGAAACCACA 43857 .......... .......... .......... .......... .......... .......... 318 GACTCTCGCT CATGATGGTG GATACTTTAT TTTTTATTTG ATTCAAAGGA AGTTTGTGAG 43797 .......... .......... .......... .......... .......... .......... 318 AAAGTTCTGA CGGGAGGACC TTACACGTGT CGGAATAGGA CTTTCATGAT TCAGGTCTGG 43737 .......... .......... .......... .......... .......... .......... 318 AAACGTGATT TTGAATTCAA TCCGGACTGC ATCACAACTA TTCCATTGTT GGTCACTTTA 43677 .......... .......... .......... .......... .......... .......... 318 CCCAACTTGT TGGTAGGTTT CTGGTCCAAT GGCTCTTTAA GTAAAATTAC AAGTGCACTC 43617 .......... .......... .......... .......... .......... .......... 318 AGTAAACCAC GATATTTCGA TAAAATAACA ATGACTATGG AACATATCTC TTATGCTCAC 43557 .......... .......... .......... .......... .......... .......... 318 GGACTGGTGG AAGTTGATGT TAGCCAACCT CTAATTGAAT TTGTGGTAAT AGCTTCACCA 43497 .......... .......... .......... .......... .......... .......... 318 GATGATATCT ATGCGCAACG TATAGACTAT GAATGGCGCT CATAATTTTG TCATCACTGC 43437 .......... .......... .......... .......... .......... .......... 318 CTCAAGTTTG GGCACATTGA AGATCAGTGC CGCGCTAAAA AGAAACAACC AGAAGATGAA 43377 .......... .......... .......... .......... .......... .......... 318 TTTCACCAAG TACCTCGGCG GAGACGAAAC AGAGGAAGGC GAGGTCAACA AAATAATAAC 43317 .......... .......... .......... .......... .......... .......... 318 AAGAAATTGT GGATTGTTAG GCCTGTGGAG GAGCCCAAAC CTCCAGTTTC TACAAATCCA 43257 .......... .......... .......... .......... .......... .......... 318 GAAGACTCTT CTTATGTGAT GTAGATGAAC ATTTAGGAAG AATACCAAAC ATCACACAAA 43197 .......... .......... .......... .......... .......... .......... 318 CTTGATGAAG TATCCACAAA TAGGTGTGTA TGCTTGACTG AGTTGGTAAG TGAGGAAGAC 43137 .......... .......... .......... .......... .......... .......... 318 AGTGGTTAAT AGAGGACCCA GGTATTTCTT CACAGTTCCT ATGGTTATTT CTACATGGAA 43077 .......... .......... .......... .......... .......... .......... 318 TATATGGGGC TTGAATCAGC CCCAAAAGCA AAAAGAGGTG CAACTTATTT TTCAGAAGAA 43017 .......... .......... .......... .......... .......... .......... 318 AAATGTGGAT GTTTTTGGGT GTCTTGAAAC TAGGATGATG GATAATAAAA TCAACAACTA 42957 .......... .......... .......... .......... .......... .......... 318 TCATTAACAA GGTTGTACAA GGATGAAACA CTAGACATAA TTACTCAATG GCCTACAATG 42897 .......... .......... .......... .......... .......... .......... 318 GGTGAATTTG GTTGTGCTGG TGGCGACATA TTCGAGTACA GGTGCTCCAA ATCAGTGACA 42837 .......... .......... .......... .......... .......... .......... 318 AATTCATTCA TTGTAAAGTG GAGACTACTA TTTTCACTAC AATGCACACA ATAATTTATA 42777 .......... .......... .......... .......... .......... .......... 318 CAAAAAAATG AGGTACAATT GAGGAAATCT ATATGGAGTG ACTTAATTCA GGAGTTAATA 42717 .......... .......... .......... .......... .......... .......... 318 CCTCAAATGG TCACTCAACT ATGCACTTTT CTCTCAAAAA GTCACTCAAC TTTCAATTTT 42657 || ||| |||||||||| |||||||||| |||||||||| .......... .......... ....AC-TTT CTCTCAAAAA GTCACTCAAC TTTCAATTTT 353 CACTCAAAAG TCACTCAACT ATGCACTTCT TTCTCAGAAA GTCACTCAAC TTTGAATTTT 42597 || ||||| | | |||| | || || | |||||| ||| || ||||||| |||||||||| TCCTTAAAAG T-ATTCAATT ATCCATACAT TTCTCAAAAA GTGACTCAAC TTTGAATTTT 412 AACTCAAAAG TCACTCAACT ATCTACTCTT TCCTAAAAAA GTCACTCAAT CTATTAAAAT 42537 |||||||||| | |||||||| || || | || |||| || |||||||||| |||||||| | AACTCAAAAG TGACTCAACT ATTTATTTTT TCCT---CAA GTCACTCAAT CTATTAAATT 469 ATTTTTTTAA TTAAAATTTA TTAATATTAA TTATTTATAT AACAAACCAA AATTTTAAAA 42477 | ||||| || |||||||||| || | |||| || ||||||| |||||| ||| |||||| || ACTTTTTAAA TTAAAATTTA TTTACGTTAA TTGTTTATAT AACAAATCAA AATTTTTTAA 529 AAATAAAAAT ACCACTTAAA CCATTTAGTG ATCCACCCAC CTAACCCGAT CCATTAAAAA 42417 ||| || || | | | | | |||||||| |||||||||| ||||||||| |||||||||| AAA-AATAA- A--A--AATA CTATTTAGTG ATCCACCCAC CTAACCCGAC CCATTAAAAA 583 ATATAATATG ACCCATTTTA TTTT 42393 |||||||||| | |||||||| |||| ATATAATATG AACCATTTTA TTTT 607 hqPGS_C04HBa0031H05.1-_SGN-E379333+ (42692 42393) ******************************************************************************** EST sequence 40 -strand 647 n (File: SGN-E395418-) 1 CAGCCGAGTG CCGGCGAGTT TGGGGAAATA TGGGTTGCAA TCGAGTGCGA TAATACCTTT 61 TATCTTTCTC GTTTCAAAAA AAAACACAGA GAAGAGGGAG AAAGAGGAGA AGGGGCTAAT 121 TTATGTTTTA CGCTTCAATG GAAAAAGGAG TTTCTTCCCC AATTTTATAT AACTAAATTG 181 GGGGTTTTTT GTTCTAGTGT AGGCATAATA TATGCTTAAA ACGTTATTCC CAATAACGTA 241 TTAGAGTTAA AACGTAATTT CCAGTTGCGT ATTATTATTA AATTATATAT GCTTAAAACG 301 TTATTCCCAA TAACGTATTA GAGTTAAAAC GTAATTTCCA GTTACGTATT ATTATTTAAC 361 GTCGTTAGCA GACCGTCCCT TTTCTCATTA AATTTTTTAA AATAAAATAA TTTTTTTAAA 421 AAATAAATAA AGTATAAAAC GTTACTGTGA ACCACGTTTA TACTAGTTTT GTAAACAAAA 481 TTAAAAACAT ACTATTTTGA TGAATTGATT TATAAAATGA CTTATTTTGG TCAAAAATTC 541 CAGATTTTTA TGAAATGATA TTTTGTACAA CTGTACAAGT ACAAGGTGTA GTAGCTTAAT 601 ATAATTAAAG CACCTTTTAT TGTCTATTGC TTCAAAGAGA GAGGCTA Predicted gene structure (within gDNA segment 47294 to 42629): Exon 1 46286 46254 ( 33 n); cDNA 217 249 ( 33 n); score: 0.818 Intron 1 46253 46186 ( 68 n); Pd: 0.000 (s: 0), Pa: 0.631 (s: 0) Exon 2 46185 46160 ( 26 n); cDNA 250 275 ( 26 n); score: 0.615 Intron 2 46159 44624 (1536 n); Pd: 0.000 (s: 0), Pa: 0.414 (s: 0.92) Exon 3 44623 44370 ( 254 n); cDNA 276 550 ( 275 n); score: 0.719 MATCH C04HBa0031H05.1- SGN-E395418- 0.719 313 0.484 C PGS_C04HBa0031H05.1-_SGN-E395418- (46286 46254,46185 46160,44623 44370) Alignment (genomic DNA sequence = upper lines): TAAAACATTA TTGACAATAA CGTTTTATAC TTAGTTATCT CGAATCAAGT TTTAGAACTA 46227 |||||| ||| || |||||| ||| ||| | ||| TAAAACGTTA TTCCCAATAA CGTATTAGAG TTA....... .......... .......... 249 AAATGTTACT CAAAGTAACG TTTTATATTT TAGTATTGTA GACACGTGTT ATCCAGTCAC 46167 | |||| | |||||| | .......... .......... .......... .......... .AAACGTAAT TTCCAGTTGC 268 GGGCTCTGCA ATTAAAAAAT CGAATTCTGT ATTTTACAGA TTATAAAATG TAACTGATAA 46107 | | | GTATTAT... .......... .......... .......... .......... .......... 275 TCACGTTTAT TATATTAAAC GTAACTGTCA ATCTCGTTTT ATGAAAATTT AATCACCGGG 46047 .......... .......... .......... .......... .......... .......... 275 CATTGGATTA AGAATAAAAT CCTGCTACAT TGGAATTTTA CAAATCATAA AATGTTATCA 45987 .......... .......... .......... .......... .......... .......... 275 CTGATCACGT TTCTGCATTA AATCGTGACT ATCAATTACG ACACTATGTT AAAGTCAATT 45927 .......... .......... .......... .......... .......... .......... 275 TTTTCATTTT TTTTTACTGA CGACAAATGG TTATAAAATG AACCTTGTTG AAACAAATGT 45867 .......... .......... .......... .......... .......... .......... 275 TCTATACACT CCAACAATAT TCATTCAAAA TTTTGTTTGT GTAGCCCAAT TTTGAAACAA 45807 .......... .......... .......... .......... .......... .......... 275 TATTTATAAA GGTATGAATT AAATAAGTCA GGTCAATATA TCATATTGTG TTATTATTTT 45747 .......... .......... .......... .......... .......... .......... 275 TACCATAGCT TTCAAATATT TTTCTAATTT ATTACTTAGA AAGATGACTT ATTTTTATGT 45687 .......... .......... .......... .......... .......... .......... 275 GTAGGAATAA AAATGGCAAA TTTTGAGCAT AATGTGATGG TTGCTTTGTA CTGGGGTGGC 45627 .......... .......... .......... .......... .......... .......... 275 GAAATAATTA CTGAAATGAA CGGATGCAGG CATACTAAAT GTGCTAGAAT GATTATTAAC 45567 .......... .......... .......... .......... .......... .......... 275 ATGTATACTT CAATGAAGTA TGTTGAATTG GTTGAATTAT TACATGAGAA AATGGGTACA 45507 .......... .......... .......... .......... .......... .......... 275 GCTAGTTGAA AATATTCAAA TGGATATTTC GGGAAAATAT CCTTGTTCAA TTCAAGGTAA 45447 .......... .......... .......... .......... .......... .......... 275 CCATACAAGG TTCATTGAGT TTAAAATTGA TGATGATCAA TCTTTGCTAC AATTTTTTGT 45387 .......... .......... .......... .......... .......... .......... 275 TATACCTCAA AACTTTGCGG ATAAGATTGA CATAAATGTT TTGGAAATGT ATGTAAAGAC 45327 .......... .......... .......... .......... .......... .......... 275 CAAATCAACA AATCAAAATG ATATATTTCA AATTAGTGGT CAACATGGTT ATCACATGAA 45267 .......... .......... .......... .......... .......... .......... 275 TTTATTGTCT CAAGTAATAT ATAGTGGTTG TATATTATGT TTACATGACA GAAGCAATCA 45207 .......... .......... .......... .......... .......... .......... 275 ACTTCACATG AGCACAAGGA AGCAGTAAAC TAGTGCTACC ACTAATATTT TACTAGTTAT 45147 .......... .......... .......... .......... .......... .......... 275 CATAAAAAAG AGGAAAAACA GAACTAAAAT GTCATTTTTC AACAAAAAGG AAAATAACAA 45087 .......... .......... .......... .......... .......... .......... 275 ATTCATCAAC TATAAGATAA TCTAAATAAA TGTATGACAA AATTACCTGA AATACAAAAA 45027 .......... .......... .......... .......... .......... .......... 275 GCTCTTCTTT ATCAAAGTTT TGTTTACCTT TTTAAAGCAA ATCTGCAGAC GTTTTCAAAG 44967 .......... .......... .......... .......... .......... .......... 275 TTTCGAAATT TCACCTCCAA TCTTTTGCAG TGTGTTTAAA CTACAATACT CGATCAACAC 44907 .......... .......... .......... .......... .......... .......... 275 TCTCAAATCT CTTGTATAGA TCAAAACGAT TTCAAATTGA GTAAAGATTG AGCATCAATT 44847 .......... .......... .......... .......... .......... .......... 275 ATGGAAGAAC AAGAAGATGG TGGTCTTCCA AATTCGTGCA CTCTTCAGAT ATAGCATTCA 44787 .......... .......... .......... .......... .......... .......... 275 TCAACTTCAT TGTGCCTTTG GAGCGAGATT TGATGCTAGT TCTCTGCTTA ATTTTATCCC 44727 .......... .......... .......... .......... .......... .......... 275 CTGTAACTTG AAGGTAGGTT TGGAGAATGA AGTGGGTTTT CTTGGAGGAT TTTCTTCCCT 44667 .......... .......... .......... .......... .......... .......... 275 AATTTTAATA TAACTAAATT GGGATTTTTT TGTTCTAGTG CAGGAGTAAA TTATATATGC 44607 | |||| |||||||||| .......... .......... .......... .......... ...TATTAAA TTATATATGC 292 TTAAAACGTT ATTCTCAATA ATGTATTAGA GTTAAAACGT AATTTCCACT TACGTATTAT 44547 |||||||||| |||| ||||| | |||||||| |||||||||| |||||||| | |||||||||| TTAAAACGTT ATTCCCAATA ACGTATTAGA GTTAAAACGT AATTTCCAGT TACGTATTAT 352 TATTTAACGT TGTTAGCAGT CCGTCCCTTT TCTCATTAAA TTTTTTAAAA T---A-AA-- 44493 |||||||||| |||||||| |||||||||| |||||||||| |||||||||| | | || TATTTAACGT CGTTAGCAGA CCGTCCCTTT TCTCATTAAA TTTTTTAAAA TAAAATAATT 412 ---------- -T-AA---AG TATAAAACAT TACTGTGAAC CACGTTTATA CTAGTTTTGT 44448 | || || |||||||| | |||||||||| |||||||||| |||||||||| TTTTTAAAAA ATAAATAAAG TATAAAACGT TACTGTGAAC CACGTTTATA CTAGTTTTGT 472 AAAAAAAATT AAAAACATAC TATTTTTGAG AATTGATTTA TAGAATGACT TATTTTGGTT 44388 ||| |||||| |||||||||| |||||| | |||||||||| || ||||||| ||||||||| AAACAAAATT AAAAACATAC TATTTTGATG AATTGATTTA TAAAATGACT TATTTTGGTC 532 AAAAACTCGT GCATTTTA 44370 ||||| || | ||||| AAAAATTCCA GATTTTTA 550 hqPGS_C04HBa0031H05.1-_SGN-E395418- (46286 46254,46185 46160,44623 44370) ******************************************************************************** EST sequence 21 -strand 554 n (File: SGN-E254360-) 1 GTAATGTAGC ACCATGTGGA CCCCTTGGTA AACCAACAGG AAAAATATTC CGTGTATCTC 61 TTTTTGCTAC AATCTGAGGC GTAAGCACGG TAACTCTCTC CCATGCCCAA ATCAAAGATT 121 TGGTAAGAGT GGCAAGGGTC AACCTACATC AACATTAAAA TCTGAATCAC AAAAAGAACT 181 CTTCTTTATC AAAGTTTTTT TTACCTTTTT AAAGCAGATC TGCAGCCGTT TTCAAAGTTT 241 TAAGAATTTC ACCTCCTCTT TTCAGATACA ACATTCTTCA ACTCCATTGT GCCTTTGGAG 301 CGAGATTTGA TGCTAGTTCT CTTCATCCCT TGTAACTTGA ATGTAGGTTT GGAGAATGAA 361 GTGGGTTTTC TTGGAGGGTT TTCTTCCCCA ATTTGTCGTT TTGGTCTCAG CCGAGTGCCG 421 GCGAGTTTGG GGAAATATGG GTTGCAATCG AGTGCGATAA TACCTTTTAT CTTTCTCGTT 481 TCAAAAAAAA CACACAGAGA AGAGGGAGAA AGAGGAGAAG GGGCTAATTT ATGTTTTACG 541 CTTCAATGGA AAAA Predicted gene structure (within gDNA segment 47415 to 42309): Exon 1 45209 45183 ( 27 n); cDNA 139 163 ( 25 n); score: 0.630 Intron 1 45182 45039 ( 144 n); Pd: 0.834 (s: 0), Pa: 0.000 (s: 0.83) Exon 2 45038 44938 ( 101 n); cDNA 164 264 ( 101 n); score: 0.827 Intron 2 44937 44800 ( 138 n); Pd: 0.508 (s: 0.83), Pa: 0.000 (s: 0.92) Exon 3 44799 44662 ( 138 n); cDNA 265 394 ( 130 n); score: 0.877 MATCH C04HBa0031H05.1- SGN-E254360- 0.856 266 0.480 C PGS_C04HBa0031H05.1-_SGN-E254360- (45209 45183,45038 44938,44799 44662) Alignment (genomic DNA sequence = upper lines): TCAACTTCAC ATGAGCACAA GGAAGCAGTA AACTAGTGCT ACCACTAATA TTTTACTAGT 45150 ||||| | || || | || | || | TCAACCT-AC ATCAACATTA -AAATCT... .......... .......... .......... 163 TATCATAAAA AAGAGGAAAA ACAGAACTAA AATGTCATTT TTCAACAAAA AGGAAAATAA 45090 .......... .......... .......... .......... .......... .......... 163 CAAATTCATC AACTATAAGA TAATCTAAAT AAATGTATGA CAAAATTACC TGAAATACAA 45030 ||| |||| .......... .......... .......... .......... .......... .GAATCACAA 172 AAAG--CTCT TCTTTATCAA AGTTTTGTTT ACCTTTTTAA AGCAAATCTG CAGACGTTTT 44972 |||| |||| |||||||||| |||||| ||| |||||||||| |||| ||||| ||| |||||| AAAGAACTCT TCTTTATCAA AGTTTTTTTT ACCTTTTTAA AGCAGATCTG CAGCCGTTTT 232 CAAAGTTTCG A-AATTTCAC CTCCAATCTT TTGCAGTGTG TTTAAACTAC AATACTCGAT 44913 |||||||| | |||||||| |||| |||| || || CAAAGTTTTA AGAATTTCAC CTCC--TCTT TT-CA..... .......... .......... 264 CAACACTCTC AAATCTCTTG TATAGATCAA AACGATTTCA AATTGAGTAA AGATTGAGCA 44853 .......... .......... .......... .......... .......... .......... 264 TCAATTATGG AAGAACAAGA AGATGGTGGT CTTCCAAATT CGTGCACTCT TCAGATATAG 44793 |||| | .......... .......... .......... .......... .......... ...GATACAA 271 CATTCATCAA CTTCATTGTG CCTTTGGAGC GAGATTTGAT GCTAGTTCTC TGCTTAATTT 44733 ||||| |||| || ||||||| |||||||||| |||||||||| ||||| | || | | || CATTCTTCAA CTCCATTGTG CCTTTGGAGC GAGATTTGAT GCTAG-T-TC T-C-----TT 323 TATCCCCTGT AACTTGAAGG TAGGTTTGGA GAATGAAGTG GGTTTTCTTG GAGGATTTTC 44673 ||||| ||| |||||||| | |||||||||| |||||||||| |||||||||| |||| ||||| CATCCCTTGT AACTTGAATG TAGGTTTGGA GAATGAAGTG GGTTTTCTTG GAGGGTTTTC 383 TTCCCTAATT T 44662 ||||| |||| | TTCCCCAATT T 394 hqPGS_C04HBa0031H05.1-_SGN-E254360- (45209 45183,45038 44938,44799 44662) ******************************************************************************** EST sequence 44 -strand 514 n (File: SGN-E256299-) 1 AAAAATATTC CTTGTATCTC TTTTTGCTAC AATCTGAGGC GTAAGGACGG TAACTCTCTC 61 CCATGCCCAA ATCAAAGATT TGGTAAGAGT GGCAAGGGTC AACCTACATC AACATTAAAA 121 TCTGAATCAC AAAAAGAACT CTTCTTTATC AAAGTTTTTT TTACCTTTTT AAAGCAGATC 181 TGCAGCCGTT TTCAAAGTTT TAAAAATTTC ACCTCCTCTT TTCAGATACA ACATTCTTCA 241 ACTCCATTGT GCCTTTGGAG CGAGATTTGA TGCTAGTTCT CTTCATCCCT TGTAACTTGA 301 ATGTAGGTTT GGAGAATGAA GTGGGTTTTC TTGGAGGGTT TTCTTCCCCA ATTTGTCGTT 361 TTGGTCTCAG CCGAGTGCCG GCGAGTTTGG GGAAATATGG GTTGCAATCG AGTGCGATAA 421 TACCTTTTAT CTTTCTCGTT TCAAAAAAAA AACACAGAGA AGAGGGAGAA AGAGGAGAAG 481 GGGCTAATTT ATGTTTTACG CTTCAATGGA AAAA Predicted gene structure (within gDNA segment 47015 to 42309): Exon 1 45209 45183 ( 27 n); cDNA 99 123 ( 25 n); score: 0.630 Intron 1 45182 45039 ( 144 n); Pd: 0.834 (s: 0), Pa: 0.000 (s: 0.83) Exon 2 45038 44938 ( 101 n); cDNA 124 224 ( 101 n); score: 0.827 Intron 2 44937 44800 ( 138 n); Pd: 0.508 (s: 0.83), Pa: 0.000 (s: 0.92) Exon 3 44799 44662 ( 138 n); cDNA 225 354 ( 130 n); score: 0.877 MATCH C04HBa0031H05.1- SGN-E256299- 0.856 266 0.518 C PGS_C04HBa0031H05.1-_SGN-E256299- (45209 45183,45038 44938,44799 44662) Alignment (genomic DNA sequence = upper lines): TCAACTTCAC ATGAGCACAA GGAAGCAGTA AACTAGTGCT ACCACTAATA TTTTACTAGT 45150 ||||| | || || | || | || | TCAACCT-AC ATCAACATTA -AAATCT... .......... .......... .......... 123 TATCATAAAA AAGAGGAAAA ACAGAACTAA AATGTCATTT TTCAACAAAA AGGAAAATAA 45090 .......... .......... .......... .......... .......... .......... 123 CAAATTCATC AACTATAAGA TAATCTAAAT AAATGTATGA CAAAATTACC TGAAATACAA 45030 ||| |||| .......... .......... .......... .......... .......... .GAATCACAA 132 AAAG--CTCT TCTTTATCAA AGTTTTGTTT ACCTTTTTAA AGCAAATCTG CAGACGTTTT 44972 |||| |||| |||||||||| |||||| ||| |||||||||| |||| ||||| ||| |||||| AAAGAACTCT TCTTTATCAA AGTTTTTTTT ACCTTTTTAA AGCAGATCTG CAGCCGTTTT 192 CAAAG-TTTC GAAATTTCAC CTCCAATCTT TTGCAGTGTG TTTAAACTAC AATACTCGAT 44913 ||||| ||| ||||||||| |||| |||| || || CAAAGTTTTA AAAATTTCAC CTCC--TCTT TT-CA..... .......... .......... 224 CAACACTCTC AAATCTCTTG TATAGATCAA AACGATTTCA AATTGAGTAA AGATTGAGCA 44853 .......... .......... .......... .......... .......... .......... 224 TCAATTATGG AAGAACAAGA AGATGGTGGT CTTCCAAATT CGTGCACTCT TCAGATATAG 44793 |||| | .......... .......... .......... .......... .......... ...GATACAA 231 CATTCATCAA CTTCATTGTG CCTTTGGAGC GAGATTTGAT GCTAGTTCTC TGCTTAATTT 44733 ||||| |||| || ||||||| |||||||||| |||||||||| ||||| | || | | || CATTCTTCAA CTCCATTGTG CCTTTGGAGC GAGATTTGAT GCTAG-T-TC T-C-----TT 283 TATCCCCTGT AACTTGAAGG TAGGTTTGGA GAATGAAGTG GGTTTTCTTG GAGGATTTTC 44673 ||||| ||| |||||||| | |||||||||| |||||||||| |||||||||| |||| ||||| CATCCCTTGT AACTTGAATG TAGGTTTGGA GAATGAAGTG GGTTTTCTTG GAGGGTTTTC 343 TTCCCTAATT T 44662 ||||| |||| | TTCCCCAATT T 354 hqPGS_C04HBa0031H05.1-_SGN-E256299- (45209 45183,45038 44938,44799 44662) ******************************************************************************** EST sequence 78 +strand 751 n (File: SGN-E375458+) 1 TTTTTTTTTT TGATTTTAAA ACAAGCTTCT ATGTATCATA ATTTTCTAAA ATTTAATTGA 61 ACTTCTTTTT CCACAGAGAA AATGAGAACA ATGTTGATCC ATATAATGAT GTAAATGCTT 121 AAATTAGTGA AGAATGTTCG GAGGGAGATG AACCTTCAAA AGATGATGGT GAAAGTGAAT 181 CAGATGAAGA TATCAATAAT GCTAGAGATT TTTCTCAAAA TGACATTGGT ATAAATCTTC 241 CTAATCAATT TGACCCCTTG GTAATGTAGC ACCATGTGGA CCCCTTGGTA AACCAACAGG 301 AAAAATATTC CTTGTATCTC TTTTTGCTAC AATCTGAGGC GTAAGGACGG TAACTCTCTC 361 CCATGCCCAA ATCAAAGATT TGGTAAGAGT GGCAAGGGTC AACCTACATC AACATTAAAA 421 TCTGAATCAC AAAAAGAACT CTTCTTTATC AAAGTTTTTT TTACCTTTTT AAAGCAGATC 481 TGCAGCCGTT TTCAAAGTTT TAAAAATTTC ACCTCCTCTT TTCAGATACA ACATTCTTCA 541 ACTCCATTGT GCCTTTGGAG CGAGATTTGA TGCTAGTTCT CTTCATCCCT TGTAACTTGA 601 ATGTAGGTTT GGAGAATGAA GTGGGTTTTC TTGGAGGGTT TTCTTCCCCA ATTTGTCGTT 661 TTGGTCTCAG CCGAGTGCCG GCGAGTTTGG GGAAATATGG GTTGCAATCG AGTGCGATAA 721 TACCTTTTAT CTTTTTCGTT TCAAAAAAAA A Predicted gene structure (within gDNA segment 50605 to 42929): Exon 1 48263 48244 ( 20 n); cDNA 402 421 ( 20 n); score: 0.750 Intron 1 48243 45041 (3203 n); Pd: 0.904 (s: 0), Pa: 0.000 (s: 0.83) Exon 2 45040 44938 ( 103 n); cDNA 422 524 ( 103 n); score: 0.830 Intron 2 44937 44800 ( 138 n); Pd: 0.508 (s: 0.83), Pa: 0.000 (s: 0.92) Exon 3 44799 44662 ( 138 n); cDNA 525 654 ( 130 n); score: 0.877 PPA cDNA 11 1 MATCH C04HBa0031H05.1- SGN-E375458+ 0.857 261 0.348 C PGS_C04HBa0031H05.1-_SGN-E375458+ (48263 48244,45040 44938,44799 44662) Alignment (genomic DNA sequence = upper lines): ACTCACATCA AGAATAACAT GCATAAAATG CTATCTCTAC CTCCCCCTTC CCTTCTATAA 48204 || |||||| | | ||| || ACCTACATCA ACATTAAAAT .......... .......... .......... .......... 421 AGAAATTATA ATTATTATTT TTCCAAAAAA ATTCTATCCA TCTTTTAAAA GAATTTTTTG 48144 .......... .......... .......... .......... .......... .......... 421 AAAAAATATT CCTACATATC CCTCAAAAGA ATTTTTTATA TTTATAAAAA TTCCTACCCA 48084 .......... .......... .......... .......... .......... .......... 421 CCCCTTAAAA GTTTTTTCTT GGGGTCGGAT ATATACAAGT AATTTAAAGA GAACATTTTC 48024 .......... .......... .......... .......... .......... .......... 421 TACTTGCTTA CCGAATATAA CAAATCAAAA AAAATTAAAA CTGAAAATCT AACAAAGAAA 47964 .......... .......... .......... .......... .......... .......... 421 AAAGTTCAAA TGGTAAAAAC TTGATATGAG ATTAATTATT TGAATTTGAA GTTCTCAATT 47904 .......... .......... .......... .......... .......... .......... 421 GCTAAACAAT TTCCAATGTT TTTTTTCTCA ATGTAAATAT CATGTGGCAA AGTTTTTTTT 47844 .......... .......... .......... .......... .......... .......... 421 TATAATAAAA GAGTGCGTAA TACACACACC AACAAGAGAG TATAGTAACA GAGTGATGTA 47784 .......... .......... .......... .......... .......... .......... 421 TTCTCAAACT AATGAGTAAT AGTTTGGATA TAACATTATA ATTTAAATGG GTTTTTAACC 47724 .......... .......... .......... .......... .......... .......... 421 TTTAATTTTT GTATTCATTA TATGACAGAT AGACATTTTG TCAAAGGAAG CATTCACGAG 47664 .......... .......... .......... .......... .......... .......... 421 AAGTTGTAAA TTAATTGGTT TAATCCACTC ATGTCTTCAA TTGATCTTTT ATTGATAATT 47604 .......... .......... .......... .......... .......... .......... 421 CTACGAGAGC TAACTCGTGA TTACTACATA ATCCCTCCAT CCCTATTTAT TTGTCCACTT 47544 .......... .......... .......... .......... .......... .......... 421 TTTAATTGAC ACATTTATTA AGAAAATAAT GGGATAATGT ACAAGTACCC CCTCAATCTA 47484 .......... .......... .......... .......... .......... .......... 421 TGTCCGAAAT CCCAGAGACA CATTTATACT ATATTAAGGT CCTATTACCC CCTAAGCTTA 47424 .......... .......... .......... .......... .......... .......... 421 TTTTATAAAT ATTTTCTATC CTTATTCATT CTACGTGGCA CTATCTTGTG GGCTCAGCGT 47364 .......... .......... .......... .......... .......... .......... 421 GTGGTGACAT TTTTTTAAAA TAGCGTCACA TAGGCGGAAA AGGAGTAAAA AATTATTTAT 47304 .......... .......... .......... .......... .......... .......... 421 AAAATAAGTT CAAGGGGGTA ATTGGACCTT AGTATAGTAT AAGTGTGTCT CTGAAATTTC 47244 .......... .......... .......... .......... .......... .......... 421 AGGCATTGAT TGAGGGGGTA CTTGTGCATT TTCCCGAAAA TAATTAATAA CGTAGTGATT 47184 .......... .......... .......... .......... .......... .......... 421 TTATCATTTT ACCCCTATAA ATAATGAGGT GAATAAAAAG CTCTACAAAT TTCAAAGTAA 47124 .......... .......... .......... .......... .......... .......... 421 TAAGTCATTT AATTATGAAT ATAATTAGTA AAAGAAAATA TCCAAAGGAA AAGTGAACAA 47064 .......... .......... .......... .......... .......... .......... 421 GTAATAAAGG ACGGAGGGAG TATGAACTAC TACGGTTATT GTGTAAATTT TATGAAATTA 47004 .......... .......... .......... .......... .......... .......... 421 TGACCTATAT TATATAATAC TTGCATAGTC TCATCTTCTT TTCTTTCAAA AAAAGCAGGC 46944 .......... .......... .......... .......... .......... .......... 421 TAGAAGATAA ATCAGTTTTA CCTATAAGCA AAAATTGTGC ATTATAGTAA ATTATTAATT 46884 .......... .......... .......... .......... .......... .......... 421 CAAAATAAAT GTAATATCTT TAATTTCATT TAATTCTAAT TCACAGCAAA CACTTTGACA 46824 .......... .......... .......... .......... .......... .......... 421 TTATATTCTC GTCTCTCTCC TGAATCTTGC TCGCCGCTCT CAATTCACTC TCTCGCCTCT 46764 .......... .......... .......... .......... .......... .......... 421 CTCACTTTAA TACAAACACA AATGTACAAA TTGTATTTAT ATTTGTTTAA AGAGAGAGAG 46704 .......... .......... .......... .......... .......... .......... 421 GTTGTATATA CAAATAAAAA TACATATTTC TCCACCCTAT ACACTCCCCT TTTGTCTTTC 46644 .......... .......... .......... .......... .......... .......... 421 TGTTTTTTCG CTTTATGCAA GCACAAAATT AAAGAGATTA CGAATCAAAG AAAACTTAAA 46584 .......... .......... .......... .......... .......... .......... 421 TGATCTTATT CAATCATAAC ATCAACTTAA ATATAAGTAA GATTAAATTA AACTAAGAGT 46524 .......... .......... .......... .......... .......... .......... 421 GGGTTAGATT TCTCTCTTCT GTGCATTTTA GTGAGGATAG CTAAATTAAG CGACTTTCAG 46464 .......... .......... .......... .......... .......... .......... 421 GAAATGCCTT CTAGATCAAA ATAAGTCATT CTATAAATCA ATGTATCAAA ATAATATGTT 46404 .......... .......... .......... .......... .......... .......... 421 TTTAATTTTT TTTCACAAAA TTAGTATAAA CGTGGTTCAC AGTAACGTTT TATGCTTTAT 46344 .......... .......... .......... .......... .......... .......... 421 TTTATATTTA AAAATTTAAT GAAAAAAAAA AGCAAAAGTT CACGGAGCAA ACAGAAATAA 46284 .......... .......... .......... .......... .......... .......... 421 AACATTATTG ACAATAACGT TTTATACTTA GTTATCTCGA ATCAAGTTTT AGAACTAAAA 46224 .......... .......... .......... .......... .......... .......... 421 TGTTACTCAA AGTAACGTTT TATATTTTAG TATTGTAGAC ACGTGTTATC CAGTCACGGG 46164 .......... .......... .......... .......... .......... .......... 421 CTCTGCAATT AAAAAATCGA ATTCTGTATT TTACAGATTA TAAAATGTAA CTGATAATCA 46104 .......... .......... .......... .......... .......... .......... 421 CGTTTATTAT ATTAAACGTA ACTGTCAATC TCGTTTTATG AAAATTTAAT CACCGGGCAT 46044 .......... .......... .......... .......... .......... .......... 421 TGGATTAAGA ATAAAATCCT GCTACATTGG AATTTTACAA ATCATAAAAT GTTATCACTG 45984 .......... .......... .......... .......... .......... .......... 421 ATCACGTTTC TGCATTAAAT CGTGACTATC AATTACGACA CTATGTTAAA GTCAATTTTT 45924 .......... .......... .......... .......... .......... .......... 421 TCATTTTTTT TTACTGACGA CAAATGGTTA TAAAATGAAC CTTGTTGAAA CAAATGTTCT 45864 .......... .......... .......... .......... .......... .......... 421 ATACACTCCA ACAATATTCA TTCAAAATTT TGTTTGTGTA GCCCAATTTT GAAACAATAT 45804 .......... .......... .......... .......... .......... .......... 421 TTATAAAGGT ATGAATTAAA TAAGTCAGGT CAATATATCA TATTGTGTTA TTATTTTTAC 45744 .......... .......... .......... .......... .......... .......... 421 CATAGCTTTC AAATATTTTT CTAATTTATT ACTTAGAAAG ATGACTTATT TTTATGTGTA 45684 .......... .......... .......... .......... .......... .......... 421 GGAATAAAAA TGGCAAATTT TGAGCATAAT GTGATGGTTG CTTTGTACTG GGGTGGCGAA 45624 .......... .......... .......... .......... .......... .......... 421 ATAATTACTG AAATGAACGG ATGCAGGCAT ACTAAATGTG CTAGAATGAT TATTAACATG 45564 .......... .......... .......... .......... .......... .......... 421 TATACTTCAA TGAAGTATGT TGAATTGGTT GAATTATTAC ATGAGAAAAT GGGTACAGCT 45504 .......... .......... .......... .......... .......... .......... 421 AGTTGAAAAT ATTCAAATGG ATATTTCGGG AAAATATCCT TGTTCAATTC AAGGTAACCA 45444 .......... .......... .......... .......... .......... .......... 421 TACAAGGTTC ATTGAGTTTA AAATTGATGA TGATCAATCT TTGCTACAAT TTTTTGTTAT 45384 .......... .......... .......... .......... .......... .......... 421 ACCTCAAAAC TTTGCGGATA AGATTGACAT AAATGTTTTG GAAATGTATG TAAAGACCAA 45324 .......... .......... .......... .......... .......... .......... 421 ATCAACAAAT CAAAATGATA TATTTCAAAT TAGTGGTCAA CATGGTTATC ACATGAATTT 45264 .......... .......... .......... .......... .......... .......... 421 ATTGTCTCAA GTAATATATA GTGGTTGTAT ATTATGTTTA CATGACAGAA GCAATCAACT 45204 .......... .......... .......... .......... .......... .......... 421 TCACATGAGC ACAAGGAAGC AGTAAACTAG TGCTACCACT AATATTTTAC TAGTTATCAT 45144 .......... .......... .......... .......... .......... .......... 421 AAAAAAGAGG AAAAACAGAA CTAAAATGTC ATTTTTCAAC AAAAAGGAAA ATAACAAATT 45084 .......... .......... .......... .......... .......... .......... 421 CATCAACTAT AAGATAATCT AAATAAATGT ATGACAAAAT TACCTGAAAT ACAAAAAG-- 45026 ||||| |||||||| .......... .......... .......... .......... ...CTGAATC ACAAAAAGAA 438 CTCTTCTTTA TCAAAGTTTT GTTTACCTTT TTAAAGCAAA TCTGCAGACG TTTTCAAAG- 44967 |||||||||| |||||||||| ||||||||| |||||||| | ||||||| || ||||||||| CTCTTCTTTA TCAAAGTTTT TTTTACCTTT TTAAAGCAGA TCTGCAGCCG TTTTCAAAGT 498 TTTCGAAATT TCACCTCCAA TCTTTTGCAG TGTGTTTAAA CTACAATACT CGATCAACAC 44907 ||| ||||| |||||||| |||||| || TTTAAAAATT TCACCTCC-- TCTTTT-CA. .......... .......... .......... 524 TCTCAAATCT CTTGTATAGA TCAAAACGAT TTCAAATTGA GTAAAGATTG AGCATCAATT 44847 .......... .......... .......... .......... .......... .......... 524 ATGGAAGAAC AAGAAGATGG TGGTCTTCCA AATTCGTGCA CTCTTCAGAT ATAGCATTCA 44787 ||| | | ||||| .......... .......... .......... .......... .......GAT ACAACATTCT 537 TCAACTTCAT TGTGCCTTTG GAGCGAGATT TGATGCTAGT TCTCTGCTTA ATTTTATCCC 44727 |||||| ||| |||||||||| |||||||||| ||||||||| | ||| | || ||||| TCAACTCCAT TGTGCCTTTG GAGCGAGATT TGATGCTAG- T-TCT-C--- --TTCATCCC 589 CTGTAACTTG AAGGTAGGTT TGGAGAATGA AGTGGGTTTT CTTGGAGGAT TTTCTTCCCT 44667 ||||||||| || ||||||| |||||||||| |||||||||| |||||||| | ||||||||| TTGTAACTTG AATGTAGGTT TGGAGAATGA AGTGGGTTTT CTTGGAGGGT TTTCTTCCCC 649 AATTT 44662 ||||| AATTT 654 hqPGS_C04HBa0031H05.1-_SGN-E375458+ (45040 44938,44799 44662) ******************************************************************************** EST sequence 11 -strand 740 n (File: SGN-E263032-) 1 AGAAAATGAG ACCAATGTTG ATCCATATAA TGATGTAAAT GCTTAAATTA GTGAAGAATG 61 TTCGGAGGGA GATGAACCTT CAAAAGATNG ATGGTGAAAG TGAATCAGAT GAAGATATCA 121 ATAATGCTAG AGATTTTTCT CAAAATGACA TTGGTATAAA TCTTCCTAAT CAATTTGACC 181 CCTTGGTAAT GTAGCACCAT GTGGACCCCT TGGTAAACCA ACAGGAAAAA ATATTCCTTG 241 TATCTCTTTT TGCTACAATC TGAGGCGTAA GGACGGTAAC TCTCTCCCAT GCCCAAATCA 301 AAGATTTGGT AAGAGTGGCA AGGGTCAACC TACATCAACA TTAAAATCTG AATCACAAAA 361 AGAACTCTTC TTTATCAAAG TTTTTTTTAC CTTTTTAAAG CAGATCTGCA GCCGTTTTCA 421 AAGTTTTAAA AATTTCACCT CCTCTTTTCA GATACAACAT TCTTCAACTC CATTGTGCCT 481 TTGGAGCGAG ATTTGATGCT AGTTCTCTTC ATCCCTTGTA ACTTGAATGT AGGTTTGGAG 541 AATGAAGTGG GTTTTCTTGG AGGGTTTTCT TCCCCAATTT GTCGTTTTGG TCTCAGCCGA 601 GTGCCGGCGA GTTTGGGGAA ATATGGGTTG CAATCGAGTG CGATAATACC TTTTATCTTT 661 CTCGTTTCAA AAAAAAAACA CAGAGAAGAG GGAGAAAGAG GAGAAGGGGC TAATTTATGT 721 TTTACGCTTC AATGGAAAAA Predicted gene structure (within gDNA segment 49275 to 42309): Exon 1 48263 48244 ( 20 n); cDNA 328 347 ( 20 n); score: 0.750 Intron 1 48243 45041 (3203 n); Pd: 0.904 (s: 0), Pa: 0.000 (s: 0.83) Exon 2 45040 44938 ( 103 n); cDNA 348 450 ( 103 n); score: 0.830 Intron 2 44937 44800 ( 138 n); Pd: 0.508 (s: 0.83), Pa: 0.000 (s: 0.92) Exon 3 44799 44662 ( 138 n); cDNA 451 580 ( 130 n); score: 0.877 MATCH C04HBa0031H05.1- SGN-E263032- 0.857 261 0.353 C PGS_C04HBa0031H05.1-_SGN-E263032- (48263 48244,45040 44938,44799 44662) Alignment (genomic DNA sequence = upper lines): ACTCACATCA AGAATAACAT GCATAAAATG CTATCTCTAC CTCCCCCTTC CCTTCTATAA 48204 || |||||| | | ||| || ACCTACATCA ACATTAAAAT .......... .......... .......... .......... 347 AGAAATTATA ATTATTATTT TTCCAAAAAA ATTCTATCCA TCTTTTAAAA GAATTTTTTG 48144 .......... .......... .......... .......... .......... .......... 347 AAAAAATATT CCTACATATC CCTCAAAAGA ATTTTTTATA TTTATAAAAA TTCCTACCCA 48084 .......... .......... .......... .......... .......... .......... 347 CCCCTTAAAA GTTTTTTCTT GGGGTCGGAT ATATACAAGT AATTTAAAGA GAACATTTTC 48024 .......... .......... .......... .......... .......... .......... 347 TACTTGCTTA CCGAATATAA CAAATCAAAA AAAATTAAAA CTGAAAATCT AACAAAGAAA 47964 .......... .......... .......... .......... .......... .......... 347 AAAGTTCAAA TGGTAAAAAC TTGATATGAG ATTAATTATT TGAATTTGAA GTTCTCAATT 47904 .......... .......... .......... .......... .......... .......... 347 GCTAAACAAT TTCCAATGTT TTTTTTCTCA ATGTAAATAT CATGTGGCAA AGTTTTTTTT 47844 .......... .......... .......... .......... .......... .......... 347 TATAATAAAA GAGTGCGTAA TACACACACC AACAAGAGAG TATAGTAACA GAGTGATGTA 47784 .......... .......... .......... .......... .......... .......... 347 TTCTCAAACT AATGAGTAAT AGTTTGGATA TAACATTATA ATTTAAATGG GTTTTTAACC 47724 .......... .......... .......... .......... .......... .......... 347 TTTAATTTTT GTATTCATTA TATGACAGAT AGACATTTTG TCAAAGGAAG CATTCACGAG 47664 .......... .......... .......... .......... .......... .......... 347 AAGTTGTAAA TTAATTGGTT TAATCCACTC ATGTCTTCAA TTGATCTTTT ATTGATAATT 47604 .......... .......... .......... .......... .......... .......... 347 CTACGAGAGC TAACTCGTGA TTACTACATA ATCCCTCCAT CCCTATTTAT TTGTCCACTT 47544 .......... .......... .......... .......... .......... .......... 347 TTTAATTGAC ACATTTATTA AGAAAATAAT GGGATAATGT ACAAGTACCC CCTCAATCTA 47484 .......... .......... .......... .......... .......... .......... 347 TGTCCGAAAT CCCAGAGACA CATTTATACT ATATTAAGGT CCTATTACCC CCTAAGCTTA 47424 .......... .......... .......... .......... .......... .......... 347 TTTTATAAAT ATTTTCTATC CTTATTCATT CTACGTGGCA CTATCTTGTG GGCTCAGCGT 47364 .......... .......... .......... .......... .......... .......... 347 GTGGTGACAT TTTTTTAAAA TAGCGTCACA TAGGCGGAAA AGGAGTAAAA AATTATTTAT 47304 .......... .......... .......... .......... .......... .......... 347 AAAATAAGTT CAAGGGGGTA ATTGGACCTT AGTATAGTAT AAGTGTGTCT CTGAAATTTC 47244 .......... .......... .......... .......... .......... .......... 347 AGGCATTGAT TGAGGGGGTA CTTGTGCATT TTCCCGAAAA TAATTAATAA CGTAGTGATT 47184 .......... .......... .......... .......... .......... .......... 347 TTATCATTTT ACCCCTATAA ATAATGAGGT GAATAAAAAG CTCTACAAAT TTCAAAGTAA 47124 .......... .......... .......... .......... .......... .......... 347 TAAGTCATTT AATTATGAAT ATAATTAGTA AAAGAAAATA TCCAAAGGAA AAGTGAACAA 47064 .......... .......... .......... .......... .......... .......... 347 GTAATAAAGG ACGGAGGGAG TATGAACTAC TACGGTTATT GTGTAAATTT TATGAAATTA 47004 .......... .......... .......... .......... .......... .......... 347 TGACCTATAT TATATAATAC TTGCATAGTC TCATCTTCTT TTCTTTCAAA AAAAGCAGGC 46944 .......... .......... .......... .......... .......... .......... 347 TAGAAGATAA ATCAGTTTTA CCTATAAGCA AAAATTGTGC ATTATAGTAA ATTATTAATT 46884 .......... .......... .......... .......... .......... .......... 347 CAAAATAAAT GTAATATCTT TAATTTCATT TAATTCTAAT TCACAGCAAA CACTTTGACA 46824 .......... .......... .......... .......... .......... .......... 347 TTATATTCTC GTCTCTCTCC TGAATCTTGC TCGCCGCTCT CAATTCACTC TCTCGCCTCT 46764 .......... .......... .......... .......... .......... .......... 347 CTCACTTTAA TACAAACACA AATGTACAAA TTGTATTTAT ATTTGTTTAA AGAGAGAGAG 46704 .......... .......... .......... .......... .......... .......... 347 GTTGTATATA CAAATAAAAA TACATATTTC TCCACCCTAT ACACTCCCCT TTTGTCTTTC 46644 .......... .......... .......... .......... .......... .......... 347 TGTTTTTTCG CTTTATGCAA GCACAAAATT AAAGAGATTA CGAATCAAAG AAAACTTAAA 46584 .......... .......... .......... .......... .......... .......... 347 TGATCTTATT CAATCATAAC ATCAACTTAA ATATAAGTAA GATTAAATTA AACTAAGAGT 46524 .......... .......... .......... .......... .......... .......... 347 GGGTTAGATT TCTCTCTTCT GTGCATTTTA GTGAGGATAG CTAAATTAAG CGACTTTCAG 46464 .......... .......... .......... .......... .......... .......... 347 GAAATGCCTT CTAGATCAAA ATAAGTCATT CTATAAATCA ATGTATCAAA ATAATATGTT 46404 .......... .......... .......... .......... .......... .......... 347 TTTAATTTTT TTTCACAAAA TTAGTATAAA CGTGGTTCAC AGTAACGTTT TATGCTTTAT 46344 .......... .......... .......... .......... .......... .......... 347 TTTATATTTA AAAATTTAAT GAAAAAAAAA AGCAAAAGTT CACGGAGCAA ACAGAAATAA 46284 .......... .......... .......... .......... .......... .......... 347 AACATTATTG ACAATAACGT TTTATACTTA GTTATCTCGA ATCAAGTTTT AGAACTAAAA 46224 .......... .......... .......... .......... .......... .......... 347 TGTTACTCAA AGTAACGTTT TATATTTTAG TATTGTAGAC ACGTGTTATC CAGTCACGGG 46164 .......... .......... .......... .......... .......... .......... 347 CTCTGCAATT AAAAAATCGA ATTCTGTATT TTACAGATTA TAAAATGTAA CTGATAATCA 46104 .......... .......... .......... .......... .......... .......... 347 CGTTTATTAT ATTAAACGTA ACTGTCAATC TCGTTTTATG AAAATTTAAT CACCGGGCAT 46044 .......... .......... .......... .......... .......... .......... 347 TGGATTAAGA ATAAAATCCT GCTACATTGG AATTTTACAA ATCATAAAAT GTTATCACTG 45984 .......... .......... .......... .......... .......... .......... 347 ATCACGTTTC TGCATTAAAT CGTGACTATC AATTACGACA CTATGTTAAA GTCAATTTTT 45924 .......... .......... .......... .......... .......... .......... 347 TCATTTTTTT TTACTGACGA CAAATGGTTA TAAAATGAAC CTTGTTGAAA CAAATGTTCT 45864 .......... .......... .......... .......... .......... .......... 347 ATACACTCCA ACAATATTCA TTCAAAATTT TGTTTGTGTA GCCCAATTTT GAAACAATAT 45804 .......... .......... .......... .......... .......... .......... 347 TTATAAAGGT ATGAATTAAA TAAGTCAGGT CAATATATCA TATTGTGTTA TTATTTTTAC 45744 .......... .......... .......... .......... .......... .......... 347 CATAGCTTTC AAATATTTTT CTAATTTATT ACTTAGAAAG ATGACTTATT TTTATGTGTA 45684 .......... .......... .......... .......... .......... .......... 347 GGAATAAAAA TGGCAAATTT TGAGCATAAT GTGATGGTTG CTTTGTACTG GGGTGGCGAA 45624 .......... .......... .......... .......... .......... .......... 347 ATAATTACTG AAATGAACGG ATGCAGGCAT ACTAAATGTG CTAGAATGAT TATTAACATG 45564 .......... .......... .......... .......... .......... .......... 347 TATACTTCAA TGAAGTATGT TGAATTGGTT GAATTATTAC ATGAGAAAAT GGGTACAGCT 45504 .......... .......... .......... .......... .......... .......... 347 AGTTGAAAAT ATTCAAATGG ATATTTCGGG AAAATATCCT TGTTCAATTC AAGGTAACCA 45444 .......... .......... .......... .......... .......... .......... 347 TACAAGGTTC ATTGAGTTTA AAATTGATGA TGATCAATCT TTGCTACAAT TTTTTGTTAT 45384 .......... .......... .......... .......... .......... .......... 347 ACCTCAAAAC TTTGCGGATA AGATTGACAT AAATGTTTTG GAAATGTATG TAAAGACCAA 45324 .......... .......... .......... .......... .......... .......... 347 ATCAACAAAT CAAAATGATA TATTTCAAAT TAGTGGTCAA CATGGTTATC ACATGAATTT 45264 .......... .......... .......... .......... .......... .......... 347 ATTGTCTCAA GTAATATATA GTGGTTGTAT ATTATGTTTA CATGACAGAA GCAATCAACT 45204 .......... .......... .......... .......... .......... .......... 347 TCACATGAGC ACAAGGAAGC AGTAAACTAG TGCTACCACT AATATTTTAC TAGTTATCAT 45144 .......... .......... .......... .......... .......... .......... 347 AAAAAAGAGG AAAAACAGAA CTAAAATGTC ATTTTTCAAC AAAAAGGAAA ATAACAAATT 45084 .......... .......... .......... .......... .......... .......... 347 CATCAACTAT AAGATAATCT AAATAAATGT ATGACAAAAT TACCTGAAAT ACAAAAAG-- 45026 ||||| |||||||| .......... .......... .......... .......... ...CTGAATC ACAAAAAGAA 364 CTCTTCTTTA TCAAAGTTTT GTTTACCTTT TTAAAGCAAA TCTGCAGACG TTTTCAAAG- 44967 |||||||||| |||||||||| ||||||||| |||||||| | ||||||| || ||||||||| CTCTTCTTTA TCAAAGTTTT TTTTACCTTT TTAAAGCAGA TCTGCAGCCG TTTTCAAAGT 424 TTTCGAAATT TCACCTCCAA TCTTTTGCAG TGTGTTTAAA CTACAATACT CGATCAACAC 44907 ||| ||||| |||||||| |||||| || TTTAAAAATT TCACCTCC-- TCTTTT-CA. .......... .......... .......... 450 TCTCAAATCT CTTGTATAGA TCAAAACGAT TTCAAATTGA GTAAAGATTG AGCATCAATT 44847 .......... .......... .......... .......... .......... .......... 450 ATGGAAGAAC AAGAAGATGG TGGTCTTCCA AATTCGTGCA CTCTTCAGAT ATAGCATTCA 44787 ||| | | ||||| .......... .......... .......... .......... .......GAT ACAACATTCT 463 TCAACTTCAT TGTGCCTTTG GAGCGAGATT TGATGCTAGT TCTCTGCTTA ATTTTATCCC 44727 |||||| ||| |||||||||| |||||||||| ||||||||| | ||| | || ||||| TCAACTCCAT TGTGCCTTTG GAGCGAGATT TGATGCTAG- T-TCT-C--- --TTCATCCC 515 CTGTAACTTG AAGGTAGGTT TGGAGAATGA AGTGGGTTTT CTTGGAGGAT TTTCTTCCCT 44667 ||||||||| || ||||||| |||||||||| |||||||||| |||||||| | ||||||||| TTGTAACTTG AATGTAGGTT TGGAGAATGA AGTGGGTTTT CTTGGAGGGT TTTCTTCCCC 575 AATTT 44662 ||||| AATTT 580 hqPGS_C04HBa0031H05.1-_SGN-E263032- (45040 44938,44799 44662) ******************************************************************************** EST sequence 35 -strand 661 n (File: SGN-E375288-) 1 CTTCAAAAGA TGATGGTGAA AGTGAATCAG ATGAAGATAT CAATAATGCT AGAGATTTTT 61 CTCAAAATGA CATTGGTATA AATCTTCCTA ATCAATTTGA CCCCTTGGTA ATGTAGCACC 121 ATGTGGACCC CTTGGTAAAC CAACAGGAAA AATATTCCTT GTATCTCTTT TTGCTACAAT 181 CTGAGGCGTA AGGACGGTAA CTCTCTCCCA TGCCCAAATC AAAGATTTGG TAAGAGTGGC 241 AAGGGTCAAC CTACATCAAC ATTAAAATCT GAATCACAAA AAGAACTCTT CTTTATCAAA 301 GTTTTTTTTA CCTTTTTAAA GCAGATCTGC AGCCGTTTTC AAAGTTTTAA AAATTTCACC 361 TCCTCTTTTC AGATACAACA TTCTTCAACT CCATTGTGCC TTTGGAGCGA GATTTGATGC 421 TAGTTCTCTT CATCCCTTGT AACTTGAATG TAGGTTTGGA GAATGAAGTG GGTTTTCTTG 481 GAGGGTTTTC TTCCCCAATT TGTCGTTTTG GTCTCAGCCG AGTGCCGGCG AGTTTGGGGA 541 AATATGGGTT GCAATCGAGT GCGATAATAC CTTTTATCTT TCTCGTTTCA AAAAAAAAAC 601 ACAGAGAAGA GGGAGAAAGA GGAGAAGGGG CTAATTTATG TTTTACGCTT CAATGGAAAA 661 A Predicted gene structure (within gDNA segment 49085 to 42309): Exon 1 48263 48244 ( 20 n); cDNA 249 268 ( 20 n); score: 0.750 Intron 1 48243 45041 (3203 n); Pd: 0.904 (s: 0), Pa: 0.000 (s: 0.83) Exon 2 45040 44938 ( 103 n); cDNA 269 371 ( 103 n); score: 0.830 Intron 2 44937 44800 ( 138 n); Pd: 0.508 (s: 0.83), Pa: 0.000 (s: 0.92) Exon 3 44799 44662 ( 138 n); cDNA 372 501 ( 130 n); score: 0.877 MATCH C04HBa0031H05.1- SGN-E375288- 0.857 261 0.395 C PGS_C04HBa0031H05.1-_SGN-E375288- (48263 48244,45040 44938,44799 44662) Alignment (genomic DNA sequence = upper lines): ACTCACATCA AGAATAACAT GCATAAAATG CTATCTCTAC CTCCCCCTTC CCTTCTATAA 48204 || |||||| | | ||| || ACCTACATCA ACATTAAAAT .......... .......... .......... .......... 268 AGAAATTATA ATTATTATTT TTCCAAAAAA ATTCTATCCA TCTTTTAAAA GAATTTTTTG 48144 .......... .......... .......... .......... .......... .......... 268 AAAAAATATT CCTACATATC CCTCAAAAGA ATTTTTTATA TTTATAAAAA TTCCTACCCA 48084 .......... .......... .......... .......... .......... .......... 268 CCCCTTAAAA GTTTTTTCTT GGGGTCGGAT ATATACAAGT AATTTAAAGA GAACATTTTC 48024 .......... .......... .......... .......... .......... .......... 268 TACTTGCTTA CCGAATATAA CAAATCAAAA AAAATTAAAA CTGAAAATCT AACAAAGAAA 47964 .......... .......... .......... .......... .......... .......... 268 AAAGTTCAAA TGGTAAAAAC TTGATATGAG ATTAATTATT TGAATTTGAA GTTCTCAATT 47904 .......... .......... .......... .......... .......... .......... 268 GCTAAACAAT TTCCAATGTT TTTTTTCTCA ATGTAAATAT CATGTGGCAA AGTTTTTTTT 47844 .......... .......... .......... .......... .......... .......... 268 TATAATAAAA GAGTGCGTAA TACACACACC AACAAGAGAG TATAGTAACA GAGTGATGTA 47784 .......... .......... .......... .......... .......... .......... 268 TTCTCAAACT AATGAGTAAT AGTTTGGATA TAACATTATA ATTTAAATGG GTTTTTAACC 47724 .......... .......... .......... .......... .......... .......... 268 TTTAATTTTT GTATTCATTA TATGACAGAT AGACATTTTG TCAAAGGAAG CATTCACGAG 47664 .......... .......... .......... .......... .......... .......... 268 AAGTTGTAAA TTAATTGGTT TAATCCACTC ATGTCTTCAA TTGATCTTTT ATTGATAATT 47604 .......... .......... .......... .......... .......... .......... 268 CTACGAGAGC TAACTCGTGA TTACTACATA ATCCCTCCAT CCCTATTTAT TTGTCCACTT 47544 .......... .......... .......... .......... .......... .......... 268 TTTAATTGAC ACATTTATTA AGAAAATAAT GGGATAATGT ACAAGTACCC CCTCAATCTA 47484 .......... .......... .......... .......... .......... .......... 268 TGTCCGAAAT CCCAGAGACA CATTTATACT ATATTAAGGT CCTATTACCC CCTAAGCTTA 47424 .......... .......... .......... .......... .......... .......... 268 TTTTATAAAT ATTTTCTATC CTTATTCATT CTACGTGGCA CTATCTTGTG GGCTCAGCGT 47364 .......... .......... .......... .......... .......... .......... 268 GTGGTGACAT TTTTTTAAAA TAGCGTCACA TAGGCGGAAA AGGAGTAAAA AATTATTTAT 47304 .......... .......... .......... .......... .......... .......... 268 AAAATAAGTT CAAGGGGGTA ATTGGACCTT AGTATAGTAT AAGTGTGTCT CTGAAATTTC 47244 .......... .......... .......... .......... .......... .......... 268 AGGCATTGAT TGAGGGGGTA CTTGTGCATT TTCCCGAAAA TAATTAATAA CGTAGTGATT 47184 .......... .......... .......... .......... .......... .......... 268 TTATCATTTT ACCCCTATAA ATAATGAGGT GAATAAAAAG CTCTACAAAT TTCAAAGTAA 47124 .......... .......... .......... .......... .......... .......... 268 TAAGTCATTT AATTATGAAT ATAATTAGTA AAAGAAAATA TCCAAAGGAA AAGTGAACAA 47064 .......... .......... .......... .......... .......... .......... 268 GTAATAAAGG ACGGAGGGAG TATGAACTAC TACGGTTATT GTGTAAATTT TATGAAATTA 47004 .......... .......... .......... .......... .......... .......... 268 TGACCTATAT TATATAATAC TTGCATAGTC TCATCTTCTT TTCTTTCAAA AAAAGCAGGC 46944 .......... .......... .......... .......... .......... .......... 268 TAGAAGATAA ATCAGTTTTA CCTATAAGCA AAAATTGTGC ATTATAGTAA ATTATTAATT 46884 .......... .......... .......... .......... .......... .......... 268 CAAAATAAAT GTAATATCTT TAATTTCATT TAATTCTAAT TCACAGCAAA CACTTTGACA 46824 .......... .......... .......... .......... .......... .......... 268 TTATATTCTC GTCTCTCTCC TGAATCTTGC TCGCCGCTCT CAATTCACTC TCTCGCCTCT 46764 .......... .......... .......... .......... .......... .......... 268 CTCACTTTAA TACAAACACA AATGTACAAA TTGTATTTAT ATTTGTTTAA AGAGAGAGAG 46704 .......... .......... .......... .......... .......... .......... 268 GTTGTATATA CAAATAAAAA TACATATTTC TCCACCCTAT ACACTCCCCT TTTGTCTTTC 46644 .......... .......... .......... .......... .......... .......... 268 TGTTTTTTCG CTTTATGCAA GCACAAAATT AAAGAGATTA CGAATCAAAG AAAACTTAAA 46584 .......... .......... .......... .......... .......... .......... 268 TGATCTTATT CAATCATAAC ATCAACTTAA ATATAAGTAA GATTAAATTA AACTAAGAGT 46524 .......... .......... .......... .......... .......... .......... 268 GGGTTAGATT TCTCTCTTCT GTGCATTTTA GTGAGGATAG CTAAATTAAG CGACTTTCAG 46464 .......... .......... .......... .......... .......... .......... 268 GAAATGCCTT CTAGATCAAA ATAAGTCATT CTATAAATCA ATGTATCAAA ATAATATGTT 46404 .......... .......... .......... .......... .......... .......... 268 TTTAATTTTT TTTCACAAAA TTAGTATAAA CGTGGTTCAC AGTAACGTTT TATGCTTTAT 46344 .......... .......... .......... .......... .......... .......... 268 TTTATATTTA AAAATTTAAT GAAAAAAAAA AGCAAAAGTT CACGGAGCAA ACAGAAATAA 46284 .......... .......... .......... .......... .......... .......... 268 AACATTATTG ACAATAACGT TTTATACTTA GTTATCTCGA ATCAAGTTTT AGAACTAAAA 46224 .......... .......... .......... .......... .......... .......... 268 TGTTACTCAA AGTAACGTTT TATATTTTAG TATTGTAGAC ACGTGTTATC CAGTCACGGG 46164 .......... .......... .......... .......... .......... .......... 268 CTCTGCAATT AAAAAATCGA ATTCTGTATT TTACAGATTA TAAAATGTAA CTGATAATCA 46104 .......... .......... .......... .......... .......... .......... 268 CGTTTATTAT ATTAAACGTA ACTGTCAATC TCGTTTTATG AAAATTTAAT CACCGGGCAT 46044 .......... .......... .......... .......... .......... .......... 268 TGGATTAAGA ATAAAATCCT GCTACATTGG AATTTTACAA ATCATAAAAT GTTATCACTG 45984 .......... .......... .......... .......... .......... .......... 268 ATCACGTTTC TGCATTAAAT CGTGACTATC AATTACGACA CTATGTTAAA GTCAATTTTT 45924 .......... .......... .......... .......... .......... .......... 268 TCATTTTTTT TTACTGACGA CAAATGGTTA TAAAATGAAC CTTGTTGAAA CAAATGTTCT 45864 .......... .......... .......... .......... .......... .......... 268 ATACACTCCA ACAATATTCA TTCAAAATTT TGTTTGTGTA GCCCAATTTT GAAACAATAT 45804 .......... .......... .......... .......... .......... .......... 268 TTATAAAGGT ATGAATTAAA TAAGTCAGGT CAATATATCA TATTGTGTTA TTATTTTTAC 45744 .......... .......... .......... .......... .......... .......... 268 CATAGCTTTC AAATATTTTT CTAATTTATT ACTTAGAAAG ATGACTTATT TTTATGTGTA 45684 .......... .......... .......... .......... .......... .......... 268 GGAATAAAAA TGGCAAATTT TGAGCATAAT GTGATGGTTG CTTTGTACTG GGGTGGCGAA 45624 .......... .......... .......... .......... .......... .......... 268 ATAATTACTG AAATGAACGG ATGCAGGCAT ACTAAATGTG CTAGAATGAT TATTAACATG 45564 .......... .......... .......... .......... .......... .......... 268 TATACTTCAA TGAAGTATGT TGAATTGGTT GAATTATTAC ATGAGAAAAT GGGTACAGCT 45504 .......... .......... .......... .......... .......... .......... 268 AGTTGAAAAT ATTCAAATGG ATATTTCGGG AAAATATCCT TGTTCAATTC AAGGTAACCA 45444 .......... .......... .......... .......... .......... .......... 268 TACAAGGTTC ATTGAGTTTA AAATTGATGA TGATCAATCT TTGCTACAAT TTTTTGTTAT 45384 .......... .......... .......... .......... .......... .......... 268 ACCTCAAAAC TTTGCGGATA AGATTGACAT AAATGTTTTG GAAATGTATG TAAAGACCAA 45324 .......... .......... .......... .......... .......... .......... 268 ATCAACAAAT CAAAATGATA TATTTCAAAT TAGTGGTCAA CATGGTTATC ACATGAATTT 45264 .......... .......... .......... .......... .......... .......... 268 ATTGTCTCAA GTAATATATA GTGGTTGTAT ATTATGTTTA CATGACAGAA GCAATCAACT 45204 .......... .......... .......... .......... .......... .......... 268 TCACATGAGC ACAAGGAAGC AGTAAACTAG TGCTACCACT AATATTTTAC TAGTTATCAT 45144 .......... .......... .......... .......... .......... .......... 268 AAAAAAGAGG AAAAACAGAA CTAAAATGTC ATTTTTCAAC AAAAAGGAAA ATAACAAATT 45084 .......... .......... .......... .......... .......... .......... 268 CATCAACTAT AAGATAATCT AAATAAATGT ATGACAAAAT TACCTGAAAT ACAAAAAG-- 45026 ||||| |||||||| .......... .......... .......... .......... ...CTGAATC ACAAAAAGAA 285 CTCTTCTTTA TCAAAGTTTT GTTTACCTTT TTAAAGCAAA TCTGCAGACG TTTTCAAAG- 44967 |||||||||| |||||||||| ||||||||| |||||||| | ||||||| || ||||||||| CTCTTCTTTA TCAAAGTTTT TTTTACCTTT TTAAAGCAGA TCTGCAGCCG TTTTCAAAGT 345 TTTCGAAATT TCACCTCCAA TCTTTTGCAG TGTGTTTAAA CTACAATACT CGATCAACAC 44907 ||| ||||| |||||||| |||||| || TTTAAAAATT TCACCTCC-- TCTTTT-CA. .......... .......... .......... 371 TCTCAAATCT CTTGTATAGA TCAAAACGAT TTCAAATTGA GTAAAGATTG AGCATCAATT 44847 .......... .......... .......... .......... .......... .......... 371 ATGGAAGAAC AAGAAGATGG TGGTCTTCCA AATTCGTGCA CTCTTCAGAT ATAGCATTCA 44787 ||| | | ||||| .......... .......... .......... .......... .......GAT ACAACATTCT 384 TCAACTTCAT TGTGCCTTTG GAGCGAGATT TGATGCTAGT TCTCTGCTTA ATTTTATCCC 44727 |||||| ||| |||||||||| |||||||||| ||||||||| | ||| | || ||||| TCAACTCCAT TGTGCCTTTG GAGCGAGATT TGATGCTAG- T-TCT-C--- --TTCATCCC 436 CTGTAACTTG AAGGTAGGTT TGGAGAATGA AGTGGGTTTT CTTGGAGGAT TTTCTTCCCT 44667 ||||||||| || ||||||| |||||||||| |||||||||| |||||||| | ||||||||| TTGTAACTTG AATGTAGGTT TGGAGAATGA AGTGGGTTTT CTTGGAGGGT TTTCTTCCCC 496 AATTT 44662 ||||| AATTT 501 hqPGS_C04HBa0031H05.1-_SGN-E375288- (45040 44938,44799 44662) ******************************************************************************** EST sequence 79 +strand 703 n (File: SGN-E375287+) 1 TTTTTTTTTT TGATTTTAAA ACAAGCTTCT ATGTATCATA ATTTTCTAAA ATTTAATTGA 61 ACTTCTTTTT CCACAGAGAA AATGAGAACA ATGTTGATCC ATATAATGAT GTAAATGCTT 121 AAATTAGTGA AGAATGTTCG GAGGGAGATG AACCTTCAAA AGATGATGGT GAAAGTGAAT 181 CAGATGAAGA TATCAATAAT GCTAGAGATT TTTCTCAAAA TGACATTGGT ATAAATCTTC 241 CTAATCAATT TGACCCCTTG GTAATGTAGC ACCATGTGGA CCCCTTGGTA AACCAACAGG 301 AAAAATATTC CTTGTATCTC TTTTTGCTAC AATCTGAGGC GTAAGGACGG TAACTCTCTC 361 CCATGCCCAA ATCAAAGATT TGGTAAGAGT GGCAAGGGTC AACCTACATC AACATTAAAA 421 TCTGAATCAC AAAAAGAACT CTTCTTTATC AAAGTTTTTT TTACCTTTTT AAAGCAGATC 481 TGCAGCCGTT TTCAAAGTTT TAAAAATTTC ACCTCCTCTT TTCAGATACA ACATTCTTCA 541 ACTCCATTGT GCCTTTGGAG CGAGATTTGA TGCTAGTTCT CTTCATCCCT TGTAACTTGA 601 ATGTAGGTTT GGAGAATGAA GTGGGTTTTC TTGGAGGGTT TTCTTCCCCA ATTTGTCGTT 661 TTGGTCTCAG CCGAGTGCCG GCGAGTTTGG GGAAATATGG GTT Predicted gene structure (within gDNA segment 50605 to 43409): Exon 1 48263 48244 ( 20 n); cDNA 402 421 ( 20 n); score: 0.750 Intron 1 48243 45041 (3203 n); Pd: 0.904 (s: 0), Pa: 0.000 (s: 0.83) Exon 2 45040 44938 ( 103 n); cDNA 422 524 ( 103 n); score: 0.830 Intron 2 44937 44800 ( 138 n); Pd: 0.508 (s: 0.83), Pa: 0.000 (s: 0.92) Exon 3 44799 44662 ( 138 n); cDNA 525 654 ( 130 n); score: 0.877 PPA cDNA 11 1 MATCH C04HBa0031H05.1- SGN-E375287+ 0.857 261 0.371 C PGS_C04HBa0031H05.1-_SGN-E375287+ (48263 48244,45040 44938,44799 44662) Alignment (genomic DNA sequence = upper lines): ACTCACATCA AGAATAACAT GCATAAAATG CTATCTCTAC CTCCCCCTTC CCTTCTATAA 48204 || |||||| | | ||| || ACCTACATCA ACATTAAAAT .......... .......... .......... .......... 421 AGAAATTATA ATTATTATTT TTCCAAAAAA ATTCTATCCA TCTTTTAAAA GAATTTTTTG 48144 .......... .......... .......... .......... .......... .......... 421 AAAAAATATT CCTACATATC CCTCAAAAGA ATTTTTTATA TTTATAAAAA TTCCTACCCA 48084 .......... .......... .......... .......... .......... .......... 421 CCCCTTAAAA GTTTTTTCTT GGGGTCGGAT ATATACAAGT AATTTAAAGA GAACATTTTC 48024 .......... .......... .......... .......... .......... .......... 421 TACTTGCTTA CCGAATATAA CAAATCAAAA AAAATTAAAA CTGAAAATCT AACAAAGAAA 47964 .......... .......... .......... .......... .......... .......... 421 AAAGTTCAAA TGGTAAAAAC TTGATATGAG ATTAATTATT TGAATTTGAA GTTCTCAATT 47904 .......... .......... .......... .......... .......... .......... 421 GCTAAACAAT TTCCAATGTT TTTTTTCTCA ATGTAAATAT CATGTGGCAA AGTTTTTTTT 47844 .......... .......... .......... .......... .......... .......... 421 TATAATAAAA GAGTGCGTAA TACACACACC AACAAGAGAG TATAGTAACA GAGTGATGTA 47784 .......... .......... .......... .......... .......... .......... 421 TTCTCAAACT AATGAGTAAT AGTTTGGATA TAACATTATA ATTTAAATGG GTTTTTAACC 47724 .......... .......... .......... .......... .......... .......... 421 TTTAATTTTT GTATTCATTA TATGACAGAT AGACATTTTG TCAAAGGAAG CATTCACGAG 47664 .......... .......... .......... .......... .......... .......... 421 AAGTTGTAAA TTAATTGGTT TAATCCACTC ATGTCTTCAA TTGATCTTTT ATTGATAATT 47604 .......... .......... .......... .......... .......... .......... 421 CTACGAGAGC TAACTCGTGA TTACTACATA ATCCCTCCAT CCCTATTTAT TTGTCCACTT 47544 .......... .......... .......... .......... .......... .......... 421 TTTAATTGAC ACATTTATTA AGAAAATAAT GGGATAATGT ACAAGTACCC CCTCAATCTA 47484 .......... .......... .......... .......... .......... .......... 421 TGTCCGAAAT CCCAGAGACA CATTTATACT ATATTAAGGT CCTATTACCC CCTAAGCTTA 47424 .......... .......... .......... .......... .......... .......... 421 TTTTATAAAT ATTTTCTATC CTTATTCATT CTACGTGGCA CTATCTTGTG GGCTCAGCGT 47364 .......... .......... .......... .......... .......... .......... 421 GTGGTGACAT TTTTTTAAAA TAGCGTCACA TAGGCGGAAA AGGAGTAAAA AATTATTTAT 47304 .......... .......... .......... .......... .......... .......... 421 AAAATAAGTT CAAGGGGGTA ATTGGACCTT AGTATAGTAT AAGTGTGTCT CTGAAATTTC 47244 .......... .......... .......... .......... .......... .......... 421 AGGCATTGAT TGAGGGGGTA CTTGTGCATT TTCCCGAAAA TAATTAATAA CGTAGTGATT 47184 .......... .......... .......... .......... .......... .......... 421 TTATCATTTT ACCCCTATAA ATAATGAGGT GAATAAAAAG CTCTACAAAT TTCAAAGTAA 47124 .......... .......... .......... .......... .......... .......... 421 TAAGTCATTT AATTATGAAT ATAATTAGTA AAAGAAAATA TCCAAAGGAA AAGTGAACAA 47064 .......... .......... .......... .......... .......... .......... 421 GTAATAAAGG ACGGAGGGAG TATGAACTAC TACGGTTATT GTGTAAATTT TATGAAATTA 47004 .......... .......... .......... .......... .......... .......... 421 TGACCTATAT TATATAATAC TTGCATAGTC TCATCTTCTT TTCTTTCAAA AAAAGCAGGC 46944 .......... .......... .......... .......... .......... .......... 421 TAGAAGATAA ATCAGTTTTA CCTATAAGCA AAAATTGTGC ATTATAGTAA ATTATTAATT 46884 .......... .......... .......... .......... .......... .......... 421 CAAAATAAAT GTAATATCTT TAATTTCATT TAATTCTAAT TCACAGCAAA CACTTTGACA 46824 .......... .......... .......... .......... .......... .......... 421 TTATATTCTC GTCTCTCTCC TGAATCTTGC TCGCCGCTCT CAATTCACTC TCTCGCCTCT 46764 .......... .......... .......... .......... .......... .......... 421 CTCACTTTAA TACAAACACA AATGTACAAA TTGTATTTAT ATTTGTTTAA AGAGAGAGAG 46704 .......... .......... .......... .......... .......... .......... 421 GTTGTATATA CAAATAAAAA TACATATTTC TCCACCCTAT ACACTCCCCT TTTGTCTTTC 46644 .......... .......... .......... .......... .......... .......... 421 TGTTTTTTCG CTTTATGCAA GCACAAAATT AAAGAGATTA CGAATCAAAG AAAACTTAAA 46584 .......... .......... .......... .......... .......... .......... 421 TGATCTTATT CAATCATAAC ATCAACTTAA ATATAAGTAA GATTAAATTA AACTAAGAGT 46524 .......... .......... .......... .......... .......... .......... 421 GGGTTAGATT TCTCTCTTCT GTGCATTTTA GTGAGGATAG CTAAATTAAG CGACTTTCAG 46464 .......... .......... .......... .......... .......... .......... 421 GAAATGCCTT CTAGATCAAA ATAAGTCATT CTATAAATCA ATGTATCAAA ATAATATGTT 46404 .......... .......... .......... .......... .......... .......... 421 TTTAATTTTT TTTCACAAAA TTAGTATAAA CGTGGTTCAC AGTAACGTTT TATGCTTTAT 46344 .......... .......... .......... .......... .......... .......... 421 TTTATATTTA AAAATTTAAT GAAAAAAAAA AGCAAAAGTT CACGGAGCAA ACAGAAATAA 46284 .......... .......... .......... .......... .......... .......... 421 AACATTATTG ACAATAACGT TTTATACTTA GTTATCTCGA ATCAAGTTTT AGAACTAAAA 46224 .......... .......... .......... .......... .......... .......... 421 TGTTACTCAA AGTAACGTTT TATATTTTAG TATTGTAGAC ACGTGTTATC CAGTCACGGG 46164 .......... .......... .......... .......... .......... .......... 421 CTCTGCAATT AAAAAATCGA ATTCTGTATT TTACAGATTA TAAAATGTAA CTGATAATCA 46104 .......... .......... .......... .......... .......... .......... 421 CGTTTATTAT ATTAAACGTA ACTGTCAATC TCGTTTTATG AAAATTTAAT CACCGGGCAT 46044 .......... .......... .......... .......... .......... .......... 421 TGGATTAAGA ATAAAATCCT GCTACATTGG AATTTTACAA ATCATAAAAT GTTATCACTG 45984 .......... .......... .......... .......... .......... .......... 421 ATCACGTTTC TGCATTAAAT CGTGACTATC AATTACGACA CTATGTTAAA GTCAATTTTT 45924 .......... .......... .......... .......... .......... .......... 421 TCATTTTTTT TTACTGACGA CAAATGGTTA TAAAATGAAC CTTGTTGAAA CAAATGTTCT 45864 .......... .......... .......... .......... .......... .......... 421 ATACACTCCA ACAATATTCA TTCAAAATTT TGTTTGTGTA GCCCAATTTT GAAACAATAT 45804 .......... .......... .......... .......... .......... .......... 421 TTATAAAGGT ATGAATTAAA TAAGTCAGGT CAATATATCA TATTGTGTTA TTATTTTTAC 45744 .......... .......... .......... .......... .......... .......... 421 CATAGCTTTC AAATATTTTT CTAATTTATT ACTTAGAAAG ATGACTTATT TTTATGTGTA 45684 .......... .......... .......... .......... .......... .......... 421 GGAATAAAAA TGGCAAATTT TGAGCATAAT GTGATGGTTG CTTTGTACTG GGGTGGCGAA 45624 .......... .......... .......... .......... .......... .......... 421 ATAATTACTG AAATGAACGG ATGCAGGCAT ACTAAATGTG CTAGAATGAT TATTAACATG 45564 .......... .......... .......... .......... .......... .......... 421 TATACTTCAA TGAAGTATGT TGAATTGGTT GAATTATTAC ATGAGAAAAT GGGTACAGCT 45504 .......... .......... .......... .......... .......... .......... 421 AGTTGAAAAT ATTCAAATGG ATATTTCGGG AAAATATCCT TGTTCAATTC AAGGTAACCA 45444 .......... .......... .......... .......... .......... .......... 421 TACAAGGTTC ATTGAGTTTA AAATTGATGA TGATCAATCT TTGCTACAAT TTTTTGTTAT 45384 .......... .......... .......... .......... .......... .......... 421 ACCTCAAAAC TTTGCGGATA AGATTGACAT AAATGTTTTG GAAATGTATG TAAAGACCAA 45324 .......... .......... .......... .......... .......... .......... 421 ATCAACAAAT CAAAATGATA TATTTCAAAT TAGTGGTCAA CATGGTTATC ACATGAATTT 45264 .......... .......... .......... .......... .......... .......... 421 ATTGTCTCAA GTAATATATA GTGGTTGTAT ATTATGTTTA CATGACAGAA GCAATCAACT 45204 .......... .......... .......... .......... .......... .......... 421 TCACATGAGC ACAAGGAAGC AGTAAACTAG TGCTACCACT AATATTTTAC TAGTTATCAT 45144 .......... .......... .......... .......... .......... .......... 421 AAAAAAGAGG AAAAACAGAA CTAAAATGTC ATTTTTCAAC AAAAAGGAAA ATAACAAATT 45084 .......... .......... .......... .......... .......... .......... 421 CATCAACTAT AAGATAATCT AAATAAATGT ATGACAAAAT TACCTGAAAT ACAAAAAG-- 45026 ||||| |||||||| .......... .......... .......... .......... ...CTGAATC ACAAAAAGAA 438 CTCTTCTTTA TCAAAGTTTT GTTTACCTTT TTAAAGCAAA TCTGCAGACG TTTTCAAAG- 44967 |||||||||| |||||||||| ||||||||| |||||||| | ||||||| || ||||||||| CTCTTCTTTA TCAAAGTTTT TTTTACCTTT TTAAAGCAGA TCTGCAGCCG TTTTCAAAGT 498 TTTCGAAATT TCACCTCCAA TCTTTTGCAG TGTGTTTAAA CTACAATACT CGATCAACAC 44907 ||| ||||| |||||||| |||||| || TTTAAAAATT TCACCTCC-- TCTTTT-CA. .......... .......... .......... 524 TCTCAAATCT CTTGTATAGA TCAAAACGAT TTCAAATTGA GTAAAGATTG AGCATCAATT 44847 .......... .......... .......... .......... .......... .......... 524 ATGGAAGAAC AAGAAGATGG TGGTCTTCCA AATTCGTGCA CTCTTCAGAT ATAGCATTCA 44787 ||| | | ||||| .......... .......... .......... .......... .......GAT ACAACATTCT 537 TCAACTTCAT TGTGCCTTTG GAGCGAGATT TGATGCTAGT TCTCTGCTTA ATTTTATCCC 44727 |||||| ||| |||||||||| |||||||||| ||||||||| | ||| | || ||||| TCAACTCCAT TGTGCCTTTG GAGCGAGATT TGATGCTAG- T-TCT-C--- --TTCATCCC 589 CTGTAACTTG AAGGTAGGTT TGGAGAATGA AGTGGGTTTT CTTGGAGGAT TTTCTTCCCT 44667 ||||||||| || ||||||| |||||||||| |||||||||| |||||||| | ||||||||| TTGTAACTTG AATGTAGGTT TGGAGAATGA AGTGGGTTTT CTTGGAGGGT TTTCTTCCCC 649 AATTT 44662 ||||| AATTT 654 hqPGS_C04HBa0031H05.1-_SGN-E375287+ (45040 44938,44799 44662) ******************************************************************************** EST sequence 62 -strand 454 n (File: SGN-E260344-) 1 CCATGCCCAA ATCAAAGATT TGGTAAGAGT GGCAGGGGTC AACCTACATC AACATTAAAA 61 TCTGAATCAC AAAAAGAACT CTTCTTTATC AAAGTTTTTT TTACCTTTTT AAAGCAGATC 121 TGCAGCCGTT TTCAAAGTTT TAAAAATTTC ACCTCCTCTT TTCAGATACA ACATTCTTCA 181 ACTCCATTGT GCCTTTGGAG CGAGATTTGA TGCTAGTTCT CTTCATCCCT TGTAACTTGA 241 ATGTAGGTTT GGAGAATGAA GTGGGTTTTC TTGGAGGGTT TTCTTCCCCA ATTTGTCGTT 301 TTGGTCTCAG CCGAGTGCCG GCGAGTTTGG GGAAATATGG GTTGCAATCG AGTGCGATAA 361 TACCTTTTAT CTTTCTCGTT TCAAAAAAAA AACACAGAGA AGAGGGAGAA AGAGGAGAAG 421 GGGCTAATTT ATGTTTTACG CTTCAATGGA AAAA Predicted gene structure (within gDNA segment 46415 to 42309): Exon 1 45025 44938 ( 88 n); cDNA 79 164 ( 86 n); score: 0.881 Intron 1 44937 44800 ( 138 n); Pd: 0.508 (s: 0.83), Pa: 0.000 (s: 0.92) Exon 2 44799 44662 ( 138 n); cDNA 165 294 ( 130 n); score: 0.877 MATCH C04HBa0031H05.1- SGN-E260344- 0.878 226 0.498 C PGS_C04HBa0031H05.1-_SGN-E260344- (45025 44938,44799 44662) Alignment (genomic DNA sequence = upper lines): CTCTTCTTTA TCAAAGTTTT GTTTACCTTT TTAAAGCAAA TCTGCAGACG TTTTCAAAG- 44967 |||||||||| |||||||||| ||||||||| |||||||| | ||||||| || ||||||||| CTCTTCTTTA TCAAAGTTTT TTTTACCTTT TTAAAGCAGA TCTGCAGCCG TTTTCAAAGT 138 TTTCGAAATT TCACCTCCAA TCTTTTGCAG TGTGTTTAAA CTACAATACT CGATCAACAC 44907 ||| ||||| |||||||| |||||| || TTTAAAAATT TCACCTCC-- TCTTTT-CA. .......... .......... .......... 164 TCTCAAATCT CTTGTATAGA TCAAAACGAT TTCAAATTGA GTAAAGATTG AGCATCAATT 44847 .......... .......... .......... .......... .......... .......... 164 ATGGAAGAAC AAGAAGATGG TGGTCTTCCA AATTCGTGCA CTCTTCAGAT ATAGCATTCA 44787 ||| | | ||||| .......... .......... .......... .......... .......GAT ACAACATTCT 177 TCAACTTCAT TGTGCCTTTG GAGCGAGATT TGATGCTAGT TCTCTGCTTA ATTTTATCCC 44727 |||||| ||| |||||||||| |||||||||| ||||||||| | ||| | || ||||| TCAACTCCAT TGTGCCTTTG GAGCGAGATT TGATGCTAG- T-TCT-C--- --TTCATCCC 229 CTGTAACTTG AAGGTAGGTT TGGAGAATGA AGTGGGTTTT CTTGGAGGAT TTTCTTCCCT 44667 ||||||||| || ||||||| |||||||||| |||||||||| |||||||| | ||||||||| TTGTAACTTG AATGTAGGTT TGGAGAATGA AGTGGGTTTT CTTGGAGGGT TTTCTTCCCC 289 AATTT 44662 ||||| AATTT 294 hqPGS_C04HBa0031H05.1-_SGN-E260344- (45025 44938,44799 44662) ******************************************************************************** EST sequence 19 -strand 634 n (File: SGN-E252552-) 1 GAATCAGATG AAGATATCAA TAATGCTAGA GATTTTTCTC AAAATGACAT TGGTATAAAT 61 CTTCCTAATC AATTTGACCC CTTGGTAATG TAGCACCATG TGGACCCCTT GGTAAACCAA 121 CAGGAAAAAT ATTCCTTGTA TCTCTTTTTG CTACAATCTG AGGCGTAAGG ACGGTAACTC 181 TCTCCCATGC CCAAATCAAA GATTTGGTAA GAGTGGCAAG GGTCAACCTA CATCAACATT 241 AAAATCTGAA TCACAAAAAG AACTCTTCTT TATCAAAGTT TTTTTTACCT TTTTAAAGCA 301 GATCTGCAGC CGTTTTCAAA GTTTTAAAAA TTTCACCTCC TCTTTTCAGA TACAACATTC 361 TTCAACTCCA TTGTGCCTTT GGAGCGAGAT TTGATGCTAG TTCTCTTCAT CCCTTGTAAC 421 TTGAATGTAG GTTTGGAGAA TGAAGTGGGT TTTCTTGGAG GTTTTCCCCA ATTTGTCGTT 481 TTGGTCTCAG CCGAGTGCCG GCGAGTTTGG GGAAATATGG GTTGCAATCG AGTGCGATAA 541 TACCTTTTAT CTTTCTCGTT TCAAAAAAAA AACACAGAGA AGAGGGAGAA AGAGGAGAAG 601 GGGCTAATTT ATGTTTTACG CTTCAATGGA AAAA Predicted gene structure (within gDNA segment 50055 to 42349): Exon 1 48263 48244 ( 20 n); cDNA 226 245 ( 20 n); score: 0.750 Intron 1 48243 45041 (3203 n); Pd: 0.904 (s: 0), Pa: 0.000 (s: 0.83) Exon 2 45040 44938 ( 103 n); cDNA 246 348 ( 103 n); score: 0.830 Intron 2 44937 44800 ( 138 n); Pd: 0.508 (s: 0.83), Pa: 0.000 (s: 0.92) Exon 3 44799 44679 ( 121 n); cDNA 349 461 ( 113 n); score: 0.876 Intron 3 44678 43682 ( 997 n); Pd: 0.000 (s: 0.96), Pa: 0.000 (s: 0) Exon 4 43681 43667 ( 15 n); cDNA 462 476 ( 15 n); score: 0.800 MATCH C04HBa0031H05.1- SGN-E252552- 0.855 259 0.409 C PGS_C04HBa0031H05.1-_SGN-E252552- (48263 48244,45040 44938,44799 44679,43681 43667) Alignment (genomic DNA sequence = upper lines): ACTCACATCA AGAATAACAT GCATAAAATG CTATCTCTAC CTCCCCCTTC CCTTCTATAA 48204 || |||||| | | ||| || ACCTACATCA ACATTAAAAT .......... .......... .......... .......... 245 AGAAATTATA ATTATTATTT TTCCAAAAAA ATTCTATCCA TCTTTTAAAA GAATTTTTTG 48144 .......... .......... .......... .......... .......... .......... 245 AAAAAATATT CCTACATATC CCTCAAAAGA ATTTTTTATA TTTATAAAAA TTCCTACCCA 48084 .......... .......... .......... .......... .......... .......... 245 CCCCTTAAAA GTTTTTTCTT GGGGTCGGAT ATATACAAGT AATTTAAAGA GAACATTTTC 48024 .......... .......... .......... .......... .......... .......... 245 TACTTGCTTA CCGAATATAA CAAATCAAAA AAAATTAAAA CTGAAAATCT AACAAAGAAA 47964 .......... .......... .......... .......... .......... .......... 245 AAAGTTCAAA TGGTAAAAAC TTGATATGAG ATTAATTATT TGAATTTGAA GTTCTCAATT 47904 .......... .......... .......... .......... .......... .......... 245 GCTAAACAAT TTCCAATGTT TTTTTTCTCA ATGTAAATAT CATGTGGCAA AGTTTTTTTT 47844 .......... .......... .......... .......... .......... .......... 245 TATAATAAAA GAGTGCGTAA TACACACACC AACAAGAGAG TATAGTAACA GAGTGATGTA 47784 .......... .......... .......... .......... .......... .......... 245 TTCTCAAACT AATGAGTAAT AGTTTGGATA TAACATTATA ATTTAAATGG GTTTTTAACC 47724 .......... .......... .......... .......... .......... .......... 245 TTTAATTTTT GTATTCATTA TATGACAGAT AGACATTTTG TCAAAGGAAG CATTCACGAG 47664 .......... .......... .......... .......... .......... .......... 245 AAGTTGTAAA TTAATTGGTT TAATCCACTC ATGTCTTCAA TTGATCTTTT ATTGATAATT 47604 .......... .......... .......... .......... .......... .......... 245 CTACGAGAGC TAACTCGTGA TTACTACATA ATCCCTCCAT CCCTATTTAT TTGTCCACTT 47544 .......... .......... .......... .......... .......... .......... 245 TTTAATTGAC ACATTTATTA AGAAAATAAT GGGATAATGT ACAAGTACCC CCTCAATCTA 47484 .......... .......... .......... .......... .......... .......... 245 TGTCCGAAAT CCCAGAGACA CATTTATACT ATATTAAGGT CCTATTACCC CCTAAGCTTA 47424 .......... .......... .......... .......... .......... .......... 245 TTTTATAAAT ATTTTCTATC CTTATTCATT CTACGTGGCA CTATCTTGTG GGCTCAGCGT 47364 .......... .......... .......... .......... .......... .......... 245 GTGGTGACAT TTTTTTAAAA TAGCGTCACA TAGGCGGAAA AGGAGTAAAA AATTATTTAT 47304 .......... .......... .......... .......... .......... .......... 245 AAAATAAGTT CAAGGGGGTA ATTGGACCTT AGTATAGTAT AAGTGTGTCT CTGAAATTTC 47244 .......... .......... .......... .......... .......... .......... 245 AGGCATTGAT TGAGGGGGTA CTTGTGCATT TTCCCGAAAA TAATTAATAA CGTAGTGATT 47184 .......... .......... .......... .......... .......... .......... 245 TTATCATTTT ACCCCTATAA ATAATGAGGT GAATAAAAAG CTCTACAAAT TTCAAAGTAA 47124 .......... .......... .......... .......... .......... .......... 245 TAAGTCATTT AATTATGAAT ATAATTAGTA AAAGAAAATA TCCAAAGGAA AAGTGAACAA 47064 .......... .......... .......... .......... .......... .......... 245 GTAATAAAGG ACGGAGGGAG TATGAACTAC TACGGTTATT GTGTAAATTT TATGAAATTA 47004 .......... .......... .......... .......... .......... .......... 245 TGACCTATAT TATATAATAC TTGCATAGTC TCATCTTCTT TTCTTTCAAA AAAAGCAGGC 46944 .......... .......... .......... .......... .......... .......... 245 TAGAAGATAA ATCAGTTTTA CCTATAAGCA AAAATTGTGC ATTATAGTAA ATTATTAATT 46884 .......... .......... .......... .......... .......... .......... 245 CAAAATAAAT GTAATATCTT TAATTTCATT TAATTCTAAT TCACAGCAAA CACTTTGACA 46824 .......... .......... .......... .......... .......... .......... 245 TTATATTCTC GTCTCTCTCC TGAATCTTGC TCGCCGCTCT CAATTCACTC TCTCGCCTCT 46764 .......... .......... .......... .......... .......... .......... 245 CTCACTTTAA TACAAACACA AATGTACAAA TTGTATTTAT ATTTGTTTAA AGAGAGAGAG 46704 .......... .......... .......... .......... .......... .......... 245 GTTGTATATA CAAATAAAAA TACATATTTC TCCACCCTAT ACACTCCCCT TTTGTCTTTC 46644 .......... .......... .......... .......... .......... .......... 245 TGTTTTTTCG CTTTATGCAA GCACAAAATT AAAGAGATTA CGAATCAAAG AAAACTTAAA 46584 .......... .......... .......... .......... .......... .......... 245 TGATCTTATT CAATCATAAC ATCAACTTAA ATATAAGTAA GATTAAATTA AACTAAGAGT 46524 .......... .......... .......... .......... .......... .......... 245 GGGTTAGATT TCTCTCTTCT GTGCATTTTA GTGAGGATAG CTAAATTAAG CGACTTTCAG 46464 .......... .......... .......... .......... .......... .......... 245 GAAATGCCTT CTAGATCAAA ATAAGTCATT CTATAAATCA ATGTATCAAA ATAATATGTT 46404 .......... .......... .......... .......... .......... .......... 245 TTTAATTTTT TTTCACAAAA TTAGTATAAA CGTGGTTCAC AGTAACGTTT TATGCTTTAT 46344 .......... .......... .......... .......... .......... .......... 245 TTTATATTTA AAAATTTAAT GAAAAAAAAA AGCAAAAGTT CACGGAGCAA ACAGAAATAA 46284 .......... .......... .......... .......... .......... .......... 245 AACATTATTG ACAATAACGT TTTATACTTA GTTATCTCGA ATCAAGTTTT AGAACTAAAA 46224 .......... .......... .......... .......... .......... .......... 245 TGTTACTCAA AGTAACGTTT TATATTTTAG TATTGTAGAC ACGTGTTATC CAGTCACGGG 46164 .......... .......... .......... .......... .......... .......... 245 CTCTGCAATT AAAAAATCGA ATTCTGTATT TTACAGATTA TAAAATGTAA CTGATAATCA 46104 .......... .......... .......... .......... .......... .......... 245 CGTTTATTAT ATTAAACGTA ACTGTCAATC TCGTTTTATG AAAATTTAAT CACCGGGCAT 46044 .......... .......... .......... .......... .......... .......... 245 TGGATTAAGA ATAAAATCCT GCTACATTGG AATTTTACAA ATCATAAAAT GTTATCACTG 45984 .......... .......... .......... .......... .......... .......... 245 ATCACGTTTC TGCATTAAAT CGTGACTATC AATTACGACA CTATGTTAAA GTCAATTTTT 45924 .......... .......... .......... .......... .......... .......... 245 TCATTTTTTT TTACTGACGA CAAATGGTTA TAAAATGAAC CTTGTTGAAA CAAATGTTCT 45864 .......... .......... .......... .......... .......... .......... 245 ATACACTCCA ACAATATTCA TTCAAAATTT TGTTTGTGTA GCCCAATTTT GAAACAATAT 45804 .......... .......... .......... .......... .......... .......... 245 TTATAAAGGT ATGAATTAAA TAAGTCAGGT CAATATATCA TATTGTGTTA TTATTTTTAC 45744 .......... .......... .......... .......... .......... .......... 245 CATAGCTTTC AAATATTTTT CTAATTTATT ACTTAGAAAG ATGACTTATT TTTATGTGTA 45684 .......... .......... .......... .......... .......... .......... 245 GGAATAAAAA TGGCAAATTT TGAGCATAAT GTGATGGTTG CTTTGTACTG GGGTGGCGAA 45624 .......... .......... .......... .......... .......... .......... 245 ATAATTACTG AAATGAACGG ATGCAGGCAT ACTAAATGTG CTAGAATGAT TATTAACATG 45564 .......... .......... .......... .......... .......... .......... 245 TATACTTCAA TGAAGTATGT TGAATTGGTT GAATTATTAC ATGAGAAAAT GGGTACAGCT 45504 .......... .......... .......... .......... .......... .......... 245 AGTTGAAAAT ATTCAAATGG ATATTTCGGG AAAATATCCT TGTTCAATTC AAGGTAACCA 45444 .......... .......... .......... .......... .......... .......... 245 TACAAGGTTC ATTGAGTTTA AAATTGATGA TGATCAATCT TTGCTACAAT TTTTTGTTAT 45384 .......... .......... .......... .......... .......... .......... 245 ACCTCAAAAC TTTGCGGATA AGATTGACAT AAATGTTTTG GAAATGTATG TAAAGACCAA 45324 .......... .......... .......... .......... .......... .......... 245 ATCAACAAAT CAAAATGATA TATTTCAAAT TAGTGGTCAA CATGGTTATC ACATGAATTT 45264 .......... .......... .......... .......... .......... .......... 245 ATTGTCTCAA GTAATATATA GTGGTTGTAT ATTATGTTTA CATGACAGAA GCAATCAACT 45204 .......... .......... .......... .......... .......... .......... 245 TCACATGAGC ACAAGGAAGC AGTAAACTAG TGCTACCACT AATATTTTAC TAGTTATCAT 45144 .......... .......... .......... .......... .......... .......... 245 AAAAAAGAGG AAAAACAGAA CTAAAATGTC ATTTTTCAAC AAAAAGGAAA ATAACAAATT 45084 .......... .......... .......... .......... .......... .......... 245 CATCAACTAT AAGATAATCT AAATAAATGT ATGACAAAAT TACCTGAAAT ACAAAAAG-- 45026 ||||| |||||||| .......... .......... .......... .......... ...CTGAATC ACAAAAAGAA 262 CTCTTCTTTA TCAAAGTTTT GTTTACCTTT TTAAAGCAAA TCTGCAGACG TTTTCAAAG- 44967 |||||||||| |||||||||| ||||||||| |||||||| | ||||||| || ||||||||| CTCTTCTTTA TCAAAGTTTT TTTTACCTTT TTAAAGCAGA TCTGCAGCCG TTTTCAAAGT 322 TTTCGAAATT TCACCTCCAA TCTTTTGCAG TGTGTTTAAA CTACAATACT CGATCAACAC 44907 ||| ||||| |||||||| |||||| || TTTAAAAATT TCACCTCC-- TCTTTT-CA. .......... .......... .......... 348 TCTCAAATCT CTTGTATAGA TCAAAACGAT TTCAAATTGA GTAAAGATTG AGCATCAATT 44847 .......... .......... .......... .......... .......... .......... 348 ATGGAAGAAC AAGAAGATGG TGGTCTTCCA AATTCGTGCA CTCTTCAGAT ATAGCATTCA 44787 ||| | | ||||| .......... .......... .......... .......... .......GAT ACAACATTCT 361 TCAACTTCAT TGTGCCTTTG GAGCGAGATT TGATGCTAGT TCTCTGCTTA ATTTTATCCC 44727 |||||| ||| |||||||||| |||||||||| ||||||||| | ||| | || ||||| TCAACTCCAT TGTGCCTTTG GAGCGAGATT TGATGCTAG- T-TCT-C--- --TTCATCCC 413 CTGTAACTTG AAGGTAGGTT TGGAGAATGA AGTGGGTTTT CTTGGAGGAT TTTCTTCCCT 44667 ||||||||| || ||||||| |||||||||| |||||||||| |||||||| TTGTAACTTG AATGTAGGTT TGGAGAATGA AGTGGGTTTT CTTGGAGG.. .......... 461 AATTTTAATA TAACTAAATT GGGATTTTTT TGTTCTAGTG CAGGAGTAAA TTATATATGC 44607 .......... .......... .......... .......... .......... .......... 461 TTAAAACGTT ATTCTCAATA ATGTATTAGA GTTAAAACGT AATTTCCACT TACGTATTAT 44547 .......... .......... .......... .......... .......... .......... 461 TATTTAACGT TGTTAGCAGT CCGTCCCTTT TCTCATTAAA TTTTTTAAAA TAAATAAAGT 44487 .......... .......... .......... .......... .......... .......... 461 ATAAAACATT ACTGTGAACC ACGTTTATAC TAGTTTTGTA AAAAAAATTA AAAACATACT 44427 .......... .......... .......... .......... .......... .......... 461 ATTTTTGAGA ATTGATTTAT AGAATGACTT ATTTTGGTTA AAAACTCGTG CATTTTAGTG 44367 .......... .......... .......... .......... .......... .......... 461 AGGATAGCTA AATTACGCGA CTTTCAGGAA ATGCCTTCTA GCTCAGCGAA AACGCCGGTA 44307 .......... .......... .......... .......... .......... .......... 461 ATGGTGATGC CGGTAGAGGG TTTGTGTAGT AAATGCCTTC CAATTACTTT TTGGGAGCTA 44247 .......... .......... .......... .......... .......... .......... 461 TCTCTCTCCT CTTTTTAGCT CCGTCCCAGA AGAGAGGGAA AAACCAGTGA AAATTCCTCA 44187 .......... .......... .......... .......... .......... .......... 461 GGCATCAATC TTTCATGATT TGGGTCGAGT GGGTACTTCT CCGTCAGTAG AGCGACTTCA 44127 .......... .......... .......... .......... .......... .......... 461 GTTCTCTACG ATGACTTCAA CAACTAAAAC ACCGGAGGTG AAACCTGTTT TCAAGAAGAA 44067 .......... .......... .......... .......... .......... .......... 461 TATTCTAACT CAGAGGGGGA AAACACCTTA ATACATTGCC CCGAGTTCTT GTCAAGGGAA 44007 .......... .......... .......... .......... .......... .......... 461 GCGAGTAGAC ATGCTCAATG AAGCAGATCT CAAACCCCAA AAGAACTATT TGAAGAATGC 43947 .......... .......... .......... .......... .......... .......... 461 AATTATAGGG TTTGTAAAGG GAGATACCCC TAATTTGAAG AGAATGGAAC TCTACATAGA 43887 .......... .......... .......... .......... .......... .......... 461 AACTGTGTGG AGATTTGCTC AGAAACCACA GACTCTCGCT CATGATGGTG GATACTTTAT 43827 .......... .......... .......... .......... .......... .......... 461 TTTTTATTTG ATTCAAAGGA AGTTTGTGAG AAAGTTCTGA CGGGAGGACC TTACACGTGT 43767 .......... .......... .......... .......... .......... .......... 461 CGGAATAGGA CTTTCATGAT TCAGGTCTGG AAACGTGATT TTGAATTCAA TCCGGACTGC 43707 .......... .......... .......... .......... .......... .......... 461 ATCACAACTA TTCCATTGTT GGTCACTTTA CCCAACTTGT 43667 ||| ||||| |||| .......... .......... .....TTTTC CCCAATTTGT 476 hqPGS_C04HBa0031H05.1-_SGN-E252552- (45040 44938,44799 44679) ******************************************************************************** EST sequence 34 -strand 480 n (File: SGN-E206062-) 1 ATATAACTAA ATTGGGGGTT TTTTGTTCTA GTGTAGGCAT AATATATGCT TAAAACGTTA 61 TTCCCAATAA CGTATTAGAG TTAAAACGTA ATTTCCAGTT GCGTATTATT ATTAAATTAT 121 ATATGCTTAA AACGTTATTC CCAATAACGT ATTAGAGTTA AAACGTAATT TCCAGTTACG 181 TATTATTATT TAACGTCGTT AGCAGACCGT CCCTTTTCTC ATTAAATTTT TTAAAATAAA 241 ATAATTTTTT TAAAAAATAA ATAAAGTATA AAACGTTACT GTGAACCACG TTTATACTAG 301 TTTTGTAAAC AAAATTAAAA ACATACTATT TTGATGAATT GATTTATAAA ATGACTTATT 361 TTGGTCAAAA ATTCCAGATT TTTATGAAAT GATATTTTGT ACAACTGTAC AAGTACAAGG 421 TGTAGTAGCT TAATATAATT AAAGCACCTT TTATTGTCTA TTGCTTCAAA GAGAGAGGCT Predicted gene structure (within gDNA segment 45634 to 42639): Exon 1 44620 44370 ( 251 n); cDNA 113 384 ( 272 n); score: 0.723 MATCH C04HBa0031H05.1- SGN-E206062- 0.723 251 0.523 C PGS_C04HBa0031H05.1-_SGN-E206062- (44620 44370) Alignment (genomic DNA sequence = upper lines): TAAATTATAT ATGCTTAAAA CGTTATTCTC AATAATGTAT TAGAGTTAAA ACGTAATTTC 44561 |||||||||| |||||||||| |||||||| | ||||| |||| |||||||||| |||||||||| TAAATTATAT ATGCTTAAAA CGTTATTCCC AATAACGTAT TAGAGTTAAA ACGTAATTTC 172 CACTTACGTA TTATTATTTA ACGTTGTTAG CAGTCCGTCC CTTTTCTCAT TAAATTTTTT 44501 || ||||||| |||||||||| |||| ||||| ||| |||||| |||||||||| |||||||||| CAGTTACGTA TTATTATTTA ACGTCGTTAG CAGACCGTCC CTTTTCTCAT TAAATTTTTT 232 AAAAT---A- AA-------- -----T-AA- A--GTATAAA ACATTACTGT GAACCACGTT 44462 ||||| | || | || | ||||||| || ||||||| |||||||||| AAAATAAAAT AATTTTTTTA AAAAATAAAT AAAGTATAAA ACGTTACTGT GAACCACGTT 292 TATACTAGTT TTGTAAAAAA AATTAAAAAC ATACTATTTT TGAGAATTGA TTTATAGAAT 44402 |||||||||| ||||||| || |||||||||| |||||||||| ||||||| |||||| ||| TATACTAGTT TTGTAAACAA AATTAAAAAC ATACTATTTT GATGAATTGA TTTATAAAAT 352 GACTTATTTT GGTTAAAAAC TCGTGCATTT TA 44370 |||||||||| ||| ||||| || | ||| || GACTTATTTT GGTCAAAAAT TCCAGATTTT TA 384 hqPGS_C04HBa0031H05.1-_SGN-E206062- (44620 44370) ******************************************************************************** EST sequence 33 +strand 858 n (File: SGN-E540411+) 1 TTTTTTTTTT CTCATAAACA TAAAGTACAC TAATATTATT ATTATAAAAT TCTCCAGTCT 61 TATACAAAAC AACATATGAC TTCACTTGAA CTATAATTAA AGAACAATAA AGGGATAATG 121 CACAAGTACC CCCTCAACCT ATGCCCGAAA TTCCAGAGAC ACACTTATAC TATACTAAGG 181 TCCTATTACC CCCCTGAACT TATTTTATAA GTAATTTTCT ACCCCTTTTT AGCCTACGTG 241 GCACTAGTTT AAAAAAAAAG TCAACAACCA TTGGGCCCAC AAGATAGTGC CACGTAGGTC 301 TAAAAGGGGT AAAAAATTAT TAATAAATAA GTTCAGGGGG TAATAAGATC TTAGTATGGT 361 ATAAGTGTAT CTCTGAGATT TTGGACATAG GCTAAGGGGG TACTTGGACA TTATCCCAAC 421 AATAAATAAA GGATATAACA TGATTCAAAA GACAACACGT GATAACCACT TCTACAACTT 481 GTGCATGATC AATTGAGCAC CATATTGAGG TTGAAGCAAC AATGGGTGAG GAGCATGAGC 541 ATAAGATGGA GAGAGTTCAA ATGCATAATG TTTTAGAATC ATGACCATTG CCATTTTTGC 601 CTCTAACATA GCAAAATTTT GCCCAATACA TATTCTTGGA CCCCAACTAA ATGGAAAAAA 661 TACAACTTGT CCTTTTGTTG CTTTTGATAT TCCTTCACTA AATCTCTCTG GCATAAACTC 721 CATTGCATCA TCTCCCCATA TTTCAGTATC ATGATGCACT AACATTGTTG CCAATATGAG 781 TTGGACCCCA GAGGGTAACA CAAATCCCCT AACTTTGTTT CTGTATTCAC CATGCGATTA 841 ATCGCGTATA CTGATGTA Predicted gene structure (within gDNA segment 45454 to 54397): Exon 1 46841 46866 ( 26 n); cDNA 87 112 ( 26 n); score: 0.769 Intron 1 46867 47209 ( 343 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 2 47210 47514 ( 305 n); cDNA 113 418 ( 306 n); score: 0.831 Intron 2 47515 47711 ( 197 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0) Exon 3 47712 47724 ( 13 n); cDNA 419 431 ( 13 n); score: 0.846 Intron 3 47725 49605 (1881 n); Pd: 0.623 (s: 0), Pa: 0.865 (s: 0) Exon 4 49606 49614 ( 9 n); cDNA 432 440 ( 9 n); score: 0.667 Intron 4 49615 53449 (3835 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.64) Exon 5 53450 53496 ( 47 n); cDNA 441 486 ( 46 n); score: 0.638 PPA cDNA 12 1 MATCH C04HBa0031H05.1+ SGN-E540411+ 0.831 400 0.466 C PGS_C04HBa0031H05.1+_SGN-E540411+ (46841 46866,47210 47514,47712 47724,49606 49614,53450 53496) Alignment (genomic DNA sequence = upper lines): TGAATTAGAA TTAAATGAAA TTAAAGATAT TACATTTATT TTGAATTAAT AATTTACTAT 46900 |||| || || ||||| | | ||||| TGAACTATAA TTAAAGAACA ATAAAG.... .......... .......... .......... 112 AATGCACAAT TTTTGCTTAT AGGTAAAACT GATTTATCTT CTAGCCTGCT TTTTTTGAAA 46960 .......... .......... .......... .......... .......... .......... 112 GAAAAGAAGA TGAGACTATG CAAGTATTAT ATAATATAGG TCATAATTTC ATAAAATTTA 47020 .......... .......... .......... .......... .......... .......... 112 CACAATAACC GTAGTAGTTC ATACTCCCTC CGTCCTTTAT TACTTGTTCA CTTTTCCTTT 47080 .......... .......... .......... .......... .......... .......... 112 GGATATTTTC TTTTACTAAT TATATTCATA ATTAAATGAC TTATTACTTT GAAATTTGTA 47140 .......... .......... .......... .......... .......... .......... 112 GAGCTTTTTA TTCACCTCAT TATTTATAGG GGTAAAATGA TAAAATCACT ACGTTATTAA 47200 .......... .......... .......... .......... .......... .......... 112 TTATTTTCGG GAAAATGCAC AAGTACCCCC TCAATCAATG CCTGAAATTT CAGAGACACA 47260 | || ||||||| |||||||||| |||| | ||| || |||||| |||||||||| .........G GATAATGCAC AAGTACCCCC TCAACCTATG CCCGAAATTC CAGAGACACA 163 CTTATACTAT ACTAAGGTCC AATTACCCCC TTGAACTTAT TTTATAAATA ATTTTTTACT 47320 |||||||||| |||||||||| ||||||||| ||||||||| ||||||| || ||||| ||| CTTATACTAT ACTAAGGTCC TATTACCCCC CTGAACTTAT TTTATAAGTA ATTTTCTACC 223 CCTTTTCCGC CTATGTGACG CTA-TTTTAA AAAAATGTCA CCACACGCTG AGCCCACAAG 47379 |||||| || ||| ||| | ||| ||| || ||||| |||| || | || ||||||||| CCTTTTTAGC CTACGTGGCA CTAGTTTAAA AAAAAAGTCA ACAACCATTG GGCCCACAAG 283 ATAGTGCCAC GTAGAATGAA TAAGGATAGA AAATATTTAT AAAATAAGCT TAGGGGGTAA 47439 |||||||||| |||| || | || || | |||| ||| ||||||| | ||||||||| ATAGTGCCAC GTAGGTCTAA AAGGGGTAAA AAATTATTAA TAAATAAGTT CAGGGGGTAA 343 TAGGACCTTA ATATAGTATA AATGTGTCTC TGGGATTTCG GACATAGATT GAGGGGGTAC 47499 || || |||| ||| ||||| | ||| |||| || ||||| | ||||||| | ||||||||| TAAGATCTTA GTATGGTATA AGTGTATCTC TGAGATTTTG GACATAGGCT AAGGGGGTAC 403 TTGTACATTA TCCCATTATT TTCTTAATAA ATGTGTCAAT TAAAAAGTGG ACAAATAAAT 47559 ||| |||||| ||||| TTGGACATTA TCCCA..... .......... .......... .......... .......... 418 AGGGATGGAG GGATTATGTA GTAATCACGA GTTAGCTCTC GTAGAATTAT CAATAAAAGA 47619 .......... .......... .......... .......... .......... .......... 418 TCAATTGAAG ACATGAGTGG ATTAAACCAA TTAATTTACA ACTTCTCGTG AATGCTTCCT 47679 .......... .......... .......... .......... .......... .......... 418 TTGACAAAAT GTCTATCTGT CATATAATGA ATACAAAAAT TAAAGGTTAA AAACCCATTT 47739 |||| || ||||| .......... .......... .......... ..ACAATAAA TAAAG..... .......... 431 AAATTATAAT GTTATATCCA AACTATTACT CATTAGTTTG AGAATACATC ACTCTGTTAC 47799 .......... .......... .......... .......... .......... .......... 431 TATACTCTCT TGTTGGTGTG TGTATTACGC ACTCTTTTAT TATAAAAAAA AACTTTGCCA 47859 .......... .......... .......... .......... .......... .......... 431 CATGATATTT ACATTGAGAA AAAAAACATT GGAAATTGTT TAGCAATTGA GAACTTCAAA 47919 .......... .......... .......... .......... .......... .......... 431 TTCAAATAAT TAATCTCATA TCAAGTTTTT ACCATTTGAA CTTTTTTCTT TGTTAGATTT 47979 .......... .......... .......... .......... .......... .......... 431 TCAGTTTTAA TTTTTTTTGA TTTGTTATAT TCGGTAAGCA AGTAGAAAAT GTTCTCTTTA 48039 .......... .......... .......... .......... .......... .......... 431 AATTACTTGT ATATATCCGA CCCCAAGAAA AAACTTTTAA GGGGTGGGTA GGAATTTTTA 48099 .......... .......... .......... .......... .......... .......... 431 TAAATATAAA AAATTCTTTT GAGGGATATG TAGGAATATT TTTTCAAAAA ATTCTTTTAA 48159 .......... .......... .......... .......... .......... .......... 431 AAGATGGATA GAATTTTTTT GGAAAAATAA TAATTATAAT TTCTTTATAG AAGGGAAGGG 48219 .......... .......... .......... .......... .......... .......... 431 GGAGGTAGAG ATAGCATTTT ATGCATGTTA TTCTTGATGT GAGTGTGAGA GTTTGTTATA 48279 .......... .......... .......... .......... .......... .......... 431 ATGCCTAATT AATAAAAGTA CTTATGATTT GTGAGAGCTT GAAATTATTC TTTATTGGAG 48339 .......... .......... .......... .......... .......... .......... 431 AGAATTTAAA TGTTTTTGCT GAATATAGTT TTGTGTCTTA ATAAATTATT GTAAGCATTT 48399 .......... .......... .......... .......... .......... .......... 431 ACATTGATTG ATATCGGCTA GTCGTTGCTT CAAGCTTTTA ATGCATAATT AGAAGTTATA 48459 .......... .......... .......... .......... .......... .......... 431 AGCGTTGAAA TTGACTCTAT GATAACACTT AGCTTGCATT TTAATTCTCA AGAAACCCTC 48519 .......... .......... .......... .......... .......... .......... 431 TTTGAAGATA TCTTTGTTTA ACTAATTGAT ATCATGTTTA AAAAATTTAA ATTAGGGGTG 48579 .......... .......... .......... .......... .......... .......... 431 TTGAGGTTGT TGTTAAATTT GGCCTACATA TTTTACTAAC AACTTAAGTT GGTTAGTATT 48639 .......... .......... .......... .......... .......... .......... 431 CCACTAACAA ATTACCAACA TATGTCTAAA TGAATTAATT TTACAACTTA ACAACGAAAT 48699 .......... .......... .......... .......... .......... .......... 431 TCTAACCAAT TACCAAGAAA ATATTACTAA CTAAGTATTT CAGTTGATAA ATACGACGAA 48759 .......... .......... .......... .......... .......... .......... 431 AAAAATGGCG CCAAACTTAG CAACATTTTA TAATGGATTA CCAACGAAAA TATTACTAAC 48819 .......... .......... .......... .......... .......... .......... 431 GAACACCTTT TGTCTGTAAT ATTACCAATG AAGTATACAT CGGTTGGTAA ATATGACAAA 48879 .......... .......... .......... .......... .......... .......... 431 AATGGTTACG TAATTTATTA ACATATAACC AATGAATTAC TAACCAAACA TTTACCACAA 48939 .......... .......... .......... .......... .......... .......... 431 CAATATTGTG TTGCTAAATT TATCAACCAA ATACAAATGT GTTGGTAATT TAGTAACGAA 48999 .......... .......... .......... .......... .......... .......... 431 ATGTAGTTTG TTGGTGAACT TGTCAACCAA TATCCTATTA GTTAGACATT TTGCCGATGA 49059 .......... .......... .......... .......... .......... .......... 431 GTAAAGATTG TAGTTTGTAA ATTACTAACA TCATTAAAAT AGTTTGTAGT ATACCAATCG 49119 .......... .......... .......... .......... .......... .......... 431 ATCACTAATC CATTGGTAAA ATTTACCAAC ATATTAATTA TTAGTTGGTA ATGTTACATA 49179 .......... .......... .......... .......... .......... .......... 431 TTAATATATA GTTGAATAGT AACTATTACC AACTGTGATA AAATTTATTG ATAAATTATT 49239 .......... .......... .......... .......... .......... .......... 431 ATTTACTAAC TTATATTTGA ATAGTTGGTA AATTACCAAT TGAAGTTTAA TTTTTTTTTG 49299 .......... .......... .......... .......... .......... .......... 431 TGTATCACGT CTAGTGTTGA GGCTTTCATA TTTAATTTTG TGTCGTTAGG TGTTTTAACT 49359 .......... .......... .......... .......... .......... .......... 431 TTTAACTTTT AGCTAAAACT TGATTTAGTC AATATTTCTT GTAGCTCATG TAGAACTCTG 49419 .......... .......... .......... .......... .......... .......... 431 TCAGTGTCAT TAGCTTCGAA AGGTTATTTT TGATCTAACA TGAAGATTGT ATCAAGTTTT 49479 .......... .......... .......... .......... .......... .......... 431 GAGGCTTTTG TTTTTTGTTT GTGCCTTTAG GTATTTTAAA TTTTATGTTT TGTCCAATAT 49539 .......... .......... .......... .......... .......... .......... 431 TCAACTTTGG TCAATTTTTG AATGTGAGCG TAATTTACTC CAAATGTTAT TTTTTTTATC 49599 .......... .......... .......... .......... .......... .......... 431 TAATAGGATA TTTGATTCGG GTTTTGAGGC TTTCATTTTC AAGTGTACCG TTAGGTATTT 49659 |||| | | ......GATA TAACA..... .......... .......... .......... .......... 440 TAACTTATAA ATTTTGGCCA AAATTTAACT TTGGTCAACA TATTTGATAA ACGTGTTTAG 49719 .......... .......... .......... .......... .......... .......... 440 ATGAAAGTTT CGTCAGTGTA GTTAGATACG ATGTCATTTT TATGCAATAA GATAAAGGGT 49779 .......... .......... .......... .......... .......... .......... 440 TCGGATTTTG AGGCTTCCGC TTTTAGCTTG TGCCGTTAGG CATTTTAACT TTTGGCCAAA 49839 .......... .......... .......... .......... .......... .......... 440 ATTTTACTTT AGTCTATATT TTTGGTAATT GTGCTCGAAT TGAAATTTTG TCTCATCGGT 49899 .......... .......... .......... .......... .......... .......... 440 TAGCCATATA AGTTCAGTTT TGGTCTCATT AGATGGTTGA TTCGGGTTTG AAGACTTTTA 49959 .......... .......... .......... .......... .......... .......... 440 TTTCCAGTTT GTGTCGTTAA GCGTTTTAAC TTTTAACTTT TGGGTAAAAT TTGAATTATG 50019 .......... .......... .......... .......... .......... .......... 440 TTATTATTTT TGGTAAACAT GCTCAAATTC GAATTTTGTC AGCGCGGCTA ACTCTAGAAG 50079 .......... .......... .......... .......... .......... .......... 440 GTCCTTTTTC ATCTTGTAGG ATTGTTGGTT TGGATTTTGA TGTTTTCATA TTTAGTTTGT 50139 .......... .......... .......... .......... .......... .......... 440 ACAATTAGAC GTGTTAAGTT TAACTTTTGG TCAAAATTTG ACGTTGATTA ACATTTTTGG 50199 .......... .......... .......... .......... .......... .......... 440 TTAATGTGCT CAAATGAGAA CCTCGTCAGC GCAATTATCT AAGGAATGTC ATTTTCTTAT 50259 .......... .......... .......... .......... .......... .......... 440 CTAATAGGCT GGTTGGTTCA GGTTTTGAGG CTTCCATTTT CAAATTGTGC TGTTAGGCAT 50319 .......... .......... .......... .......... .......... .......... 440 TTTAACTTTT AAGTTTTTGC CAAAAATTAG ATTTGATCAA TATTTTTGTT TAAAGTGCTC 50379 .......... .......... .......... .......... .......... .......... 440 AAATTAAATT TTTTGATGGA ATGATATGTG TCATATTGAG ATTAATTAAA CTTGTTATCA 50439 .......... .......... .......... .......... .......... .......... 440 TAGATTTAGC ATTGTTTCAT TCAAATATGA TTTATAAAAT TGATATTACT ATTTTTGAAT 50499 .......... .......... .......... .......... .......... .......... 440 TTATATTCGT GCTCTTAGAT TTTTAAATGT AATAAATTAA TAAATATTTT ACTATTGAAT 50559 .......... .......... .......... .......... .......... .......... 440 AATGATTTAG TTAATAATAT TTTGAACTTA TTGTCAATCA AATACTAACT TAGCATTGAA 50619 .......... .......... .......... .......... .......... .......... 440 CTTGAGTGAT ATATTATATA AAAACTAACA GTCAATTAGT AAATTTATTA GAAAAACAAA 50679 .......... .......... .......... .......... .......... .......... 440 TAATCATACT AACATATTTA AAATTTACTA CCAACAATTG TTGTGGTGGA GTGGTAAGTA 50739 .......... .......... .......... .......... .......... .......... 440 CTTTTTCATC CTTAACTAAG AGGTCTCATT TTGATTCCCC TTGGGTACAT AGTCGCTTTT 50799 .......... .......... .......... .......... .......... .......... 440 GTTAGGGAAC ACTTTGCCTC ATAATGTAGG ACTTCCCGGC GTGAATCCGA ATTTAGTCGA 50859 .......... .......... .......... .......... .......... .......... 440 GCTCTAATGT GGGTACCAGA CACCAGATAG AAAACAAAAC AAAAAATTCA AATTTAATGG 50919 .......... .......... .......... .......... .......... .......... 440 TAAATTACCA ACGTAAATTT TCTGAAAATT GCAAACCAAT TATCAATATA TCCGAAAAAT 50979 .......... .......... .......... .......... .......... .......... 440 CAGATATTTG TTACTATAAT TACCAACGGA ATCGAATAAT GAAGAAATTT TTTTTACCAA 51039 .......... .......... .......... .......... .......... .......... 440 CTCCTTTCAA TTTGTTAGTA AAGGTACTAT CGATATACTA ACCTGAAATT AGTTGGTGAA 51099 .......... .......... .......... .......... .......... .......... 440 TTTACCAACG AAAATTTAAG GGTCATGTTT GAAAATTTTG TAACAACATC TTTGGGTGTT 51159 .......... .......... .......... .......... .......... .......... 440 TTACCAACTG ATATTTGATT GGTAAGTTTA CCAACAAATA AAAATCAGTT GGTAATATTT 51219 .......... .......... .......... .......... .......... .......... 440 ACCGACGAGC CTTTTAGAAA CGGATTAACA TAAGTTGACA TTTGGTTGGT AACTCAGATT 51279 .......... .......... .......... .......... .......... .......... 440 TGCTAACCAA TTTGATACAT TTACCAACAA TCTTTTTTGT TGGTAATTAA GGTTCCTTTT 51339 .......... .......... .......... .......... .......... .......... 440 GTAGTTAACA ATTATTCAAC CTCTTTCAAC AACATAAATA GATTGTAAGA ATTTTTTAAT 51399 .......... .......... .......... .......... .......... .......... 440 CCTGTGCAAA ATTAAAATAA AAGACTTTCC AACAACAACA ACAAAAATAT GGTGCACTTG 51459 .......... .......... .......... .......... .......... .......... 440 GTTCAATTCA CCCGACCGAG AAAAAATAAA TTTGAGCTCA AATTTTGTGA TTCATTGCTA 51519 .......... .......... .......... .......... .......... .......... 440 ACCCAACTTA AATATTGAAG CTTTATCCAT CAATGGTGGA AGTATTTTAT GTAACATCTC 51579 .......... .......... .......... .......... .......... .......... 440 ACAATTTGAA ATAGGTAGGA ATAGACTAAG AAACTAAAAT TAATATTTTT TTGGAAAGAA 51639 .......... .......... .......... .......... .......... .......... 440 AGAGAAATCT GAATTTTTTT TTTCTAAGTT AAGAAAGTGA GTTTTGGTCA TTTTCAAACG 51699 .......... .......... .......... .......... .......... .......... 440 ATCATAACTT CTACCTCATA ATGAGTTAGG CGTAGTTCTT GATATGTTTG GAAAGAACTT 51759 .......... .......... .......... .......... .......... .......... 440 GGAGATATCT TTCCAACGCA AACCGAGTTT GCACATTTTC GGTATCCTTT GATGGAGATA 51819 .......... .......... .......... .......... .......... .......... 440 TATGTTGGGA ACGACAAGGC ACTAACAAAG AATGCCTGAC AGGATAACAA CGGAAGAATA 51879 .......... .......... .......... .......... .......... .......... 440 CCCAAGTCTA TACTTTCCCT TCTCGATTTG AACCAAGAGA AGACAAACAA CCACAAGCAA 51939 .......... .......... .......... .......... .......... .......... 440 TATGATAGTA AGGCAGCAAG TAATTCAACC AAACAAATAT AACTAGGCAA TAATAAACCA 51999 .......... .......... .......... .......... .......... .......... 440 ATCACACAAG ACACCAAGAT TTACGTGGAA AACCCTTCGA TGTGAAGAGT AAAAAACCAC 52059 .......... .......... .......... .......... .......... .......... 440 GGGACCAAAA GCTCCACTGT AATCACCAAG AGTTACAATA TTGTTCTCCA AAATTGGCCA 52119 .......... .......... .......... .......... .......... .......... 440 CAAAACAAGT GTCAAACAAC GAGCAACAAC AAAATAAGAC TGTACCAAAT CTAGAGAATT 52179 .......... .......... .......... .......... .......... .......... 440 AAAGTTGTGA AATCACCAAT TTCGCAGCTA CTGTTCACGA CAGCAAAACT GAAGCTGCAG 52239 .......... .......... .......... .......... .......... .......... 440 ACCATAAAAT TCAACTCTGT TAGTTCCTAA TCAAAGATTG AGATGAATAT AATATGCTGT 52299 .......... .......... .......... .......... .......... .......... 440 CCAAAAATCA GCTCAATCGG ACAAGAAACG AAGCGGGAAT CGCAATTTGA AGTTGGCTGT 52359 .......... .......... .......... .......... .......... .......... 440 TAGGGCTGAA TTTTGACTGC GAAAAACTGC TCTTTTTCTC TTTTTTTGGC TGCTAAAAAA 52419 .......... .......... .......... .......... .......... .......... 440 AACTCTCTGT GTATGAAAAT AAGACCTAAA TAGGATTATA TTTGCCTCAT AAGAATGAGC 52479 .......... .......... .......... .......... .......... .......... 440 CTATGGGAAA AAATGGGTTG GTCCAAATTG GGCTTTTATT TATCCACATA GGAAGAGAAA 52539 .......... .......... .......... .......... .......... .......... 440 AAGGCCCATA ACCCAATAAT TCTCCCCCTC ACGACTATAT GGAGGAGACC ACCATCCCGG 52599 .......... .......... .......... .......... .......... .......... 440 CGACCATGCA AAAATCTTCA AACTTTCCTC TTGGCAAAGC TTTAGTCATC ATATCGGAAC 52659 .......... .......... .......... .......... .......... .......... 440 CATTGTCATT TGTATAATCT TTTCAAGCTC AAGCAACTTA GAATCCAACA CATCTCGAAT 52719 .......... .......... .......... .......... .......... .......... 440 CCAATGCACA TCAATGTGTT TAGACCGACC ATGGAACGTA GAATTCTTGC CAAGATGTAT 52779 .......... .......... .......... .......... .......... .......... 440 AGCACTTTGA CTGTCACAAT AAAGCACATA CCTCTCTTGA GCACAACTAA GTTCCCCCAA 52839 .......... .......... .......... .......... .......... .......... 440 GAATCTCTTC ATCCAAAGCA ATTCTTTACA AGCTTCAATG ACAGCAATAA GCTCAGCTTC 52899 .......... .......... .......... .......... .......... .......... 440 TGTAGTAGAT AGAGCAACAC ATTTTTGCAA CCTAGATTGC CAAGACACAG CTCCCCCTGC 52959 .......... .......... .......... .......... .......... .......... 440 AAAAGTAACC AAGTACCCTG AAGTAGACTT GCGAGTATCA ACATCACTAG CCATGTATGG 53019 .......... .......... .......... .......... .......... .......... 440 ATCAGTATAA CCACAAAGAA TAGGCTTCCC TGTACCAAAA CACAAACTCA GACTACAAGT 53079 .......... .......... .......... .......... .......... .......... 440 GCCACAGAGA TATCTCATAA CCCACTTCAC AGAATTTCAA TGCTCTCTTC CCGGATTAGA 53139 .......... .......... .......... .......... .......... .......... 440 AAGAAAACGG CTAACAATTC CAACAGCGTG AGAAATATCC GGTCTTGTAC AAACCGTCGC 53199 .......... .......... .......... .......... .......... .......... 440 ATACATCAAA CTACCAACAG CTGAAGCATA AGGAACTTTC TTCATATCTT CCTTCTCATC 53259 .......... .......... .......... .......... .......... .......... 440 ATCACTAGAA GGACACTATT TCGTGCTCAA TTTGAAGTGC ATAGCTAAAG GTGTACTGAC 53319 .......... .......... .......... .......... .......... .......... 440 AACCTTGGCT TTGTCCATGC TGAATCTGCG AAGTACTTTA TGAATGTACT TCTCTTGTGA 53379 .......... .......... .......... .......... .......... .......... 440 TAATACCAAT TTCTTGGCCT TTCTATCATG GACAATCTGC ATGCCAAGAA TCTGTCTTGC 53439 .......... .......... .......... .......... .......... .......... 440 TGGTCCTAAG TCTTTCATAG AAAAAGACTT ACTCAACTCT TGCTTCAACT TCTGAAT 53496 | |||| | | || || | | | | || | || ||||| | || || .......... TGATTCAAAA GACAACACGT GATAACCACT T-CTACAACT TGTGCAT 486 hqPGS_C04HBa0031H05.1+_SGN-E540411+ (46841 46866,47210 47514) ******************************************************************************** EST sequence 5 +strand 489 n (File: SGN-E577955+) 1 AAATAAGAAT ATTGCTCATG ATGATTATGA GGCTATTAAT TTTGAGGATG AGTGAGATCC 61 TGATAATCAA TCAATGTATA ATTCTGAGGA TGATAAGGCT GGTATTAATA ATCCTCAGGG 121 CACTGATTTA GCTCCAAAAA AACAGAATGT TTGGTCTGCG TATATGTATT TCACATAAGT 181 GCTTTTCATA AACTTGTCTT TCCAAATATG ATAGTTACTA CCATTTAAAC ACACCATTTT 241 GCTCATATTT GCCTCCATCA TTCAAAACGA CAATCAACAA TAACCAATGC TTTGATACCA 301 CTTTGTTGGG AATGAAAAGG CACTAACAAA GAATGCCTGA CAGGATAACA GCGGAAGAAT 361 ACCCAATTCT ATACTTTCCC TTCTCGATTT GAACCAAGAG AAGACAAACA ACCACAAGCA 421 ATATGATAGT AAGGCAGCAA GTAATTCAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 481 AAAAAAAAT Predicted gene structure (within gDNA segment 48075 to 52977): Exon 1 49114 49134 ( 21 n); cDNA 271 289 ( 19 n); score: 0.762 Intron 1 49135 51805 (2671 n); Pd: 0.681 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 51806 51981 ( 176 n); cDNA 290 463 ( 174 n); score: 0.909 PPA cDNA 464 489 MATCH C04HBa0031H05.1+ SGN-E577955+ 0.909 197 0.403 C PGS_C04HBa0031H05.1+_SGN-E577955+ (49114 49134,51806 51981) Alignment (genomic DNA sequence = upper lines): CAATCGATCA CTAATCCATT GGTAAAATTT ACCAACATAT TAATTATTAG TTGGTAATGT 49173 ||||| | || ||| ||| | | CAATC-AACA ATAA-CCAAT G......... .......... .......... .......... 289 TACATATTAA TATATAGTTG AATAGTAACT ATTACCAACT GTGATAAAAT TTATTGATAA 49233 .......... .......... .......... .......... .......... .......... 289 ATTATTATTT ACTAACTTAT ATTTGAATAG TTGGTAAATT ACCAATTGAA GTTTAATTTT 49293 .......... .......... .......... .......... .......... .......... 289 TTTTTGTGTA TCACGTCTAG TGTTGAGGCT TTCATATTTA ATTTTGTGTC GTTAGGTGTT 49353 .......... .......... .......... .......... .......... .......... 289 TTAACTTTTA ACTTTTAGCT AAAACTTGAT TTAGTCAATA TTTCTTGTAG CTCATGTAGA 49413 .......... .......... .......... .......... .......... .......... 289 ACTCTGTCAG TGTCATTAGC TTCGAAAGGT TATTTTTGAT CTAACATGAA GATTGTATCA 49473 .......... .......... .......... .......... .......... .......... 289 AGTTTTGAGG CTTTTGTTTT TTGTTTGTGC CTTTAGGTAT TTTAAATTTT ATGTTTTGTC 49533 .......... .......... .......... .......... .......... .......... 289 CAATATTCAA CTTTGGTCAA TTTTTGAATG TGAGCGTAAT TTACTCCAAA TGTTATTTTT 49593 .......... .......... .......... .......... .......... .......... 289 TTTATCTAAT AGGATATTTG ATTCGGGTTT TGAGGCTTTC ATTTTCAAGT GTACCGTTAG 49653 .......... .......... .......... .......... .......... .......... 289 GTATTTTAAC TTATAAATTT TGGCCAAAAT TTAACTTTGG TCAACATATT TGATAAACGT 49713 .......... .......... .......... .......... .......... .......... 289 GTTTAGATGA AAGTTTCGTC AGTGTAGTTA GATACGATGT CATTTTTATG CAATAAGATA 49773 .......... .......... .......... .......... .......... .......... 289 AAGGGTTCGG ATTTTGAGGC TTCCGCTTTT AGCTTGTGCC GTTAGGCATT TTAACTTTTG 49833 .......... .......... .......... .......... .......... .......... 289 GCCAAAATTT TACTTTAGTC TATATTTTTG GTAATTGTGC TCGAATTGAA ATTTTGTCTC 49893 .......... .......... .......... .......... .......... .......... 289 ATCGGTTAGC CATATAAGTT CAGTTTTGGT CTCATTAGAT GGTTGATTCG GGTTTGAAGA 49953 .......... .......... .......... .......... .......... .......... 289 CTTTTATTTC CAGTTTGTGT CGTTAAGCGT TTTAACTTTT AACTTTTGGG TAAAATTTGA 50013 .......... .......... .......... .......... .......... .......... 289 ATTATGTTAT TATTTTTGGT AAACATGCTC AAATTCGAAT TTTGTCAGCG CGGCTAACTC 50073 .......... .......... .......... .......... .......... .......... 289 TAGAAGGTCC TTTTTCATCT TGTAGGATTG TTGGTTTGGA TTTTGATGTT TTCATATTTA 50133 .......... .......... .......... .......... .......... .......... 289 GTTTGTACAA TTAGACGTGT TAAGTTTAAC TTTTGGTCAA AATTTGACGT TGATTAACAT 50193 .......... .......... .......... .......... .......... .......... 289 TTTTGGTTAA TGTGCTCAAA TGAGAACCTC GTCAGCGCAA TTATCTAAGG AATGTCATTT 50253 .......... .......... .......... .......... .......... .......... 289 TCTTATCTAA TAGGCTGGTT GGTTCAGGTT TTGAGGCTTC CATTTTCAAA TTGTGCTGTT 50313 .......... .......... .......... .......... .......... .......... 289 AGGCATTTTA ACTTTTAAGT TTTTGCCAAA AATTAGATTT GATCAATATT TTTGTTTAAA 50373 .......... .......... .......... .......... .......... .......... 289 GTGCTCAAAT TAAATTTTTT GATGGAATGA TATGTGTCAT ATTGAGATTA ATTAAACTTG 50433 .......... .......... .......... .......... .......... .......... 289 TTATCATAGA TTTAGCATTG TTTCATTCAA ATATGATTTA TAAAATTGAT ATTACTATTT 50493 .......... .......... .......... .......... .......... .......... 289 TTGAATTTAT ATTCGTGCTC TTAGATTTTT AAATGTAATA AATTAATAAA TATTTTACTA 50553 .......... .......... .......... .......... .......... .......... 289 TTGAATAATG ATTTAGTTAA TAATATTTTG AACTTATTGT CAATCAAATA CTAACTTAGC 50613 .......... .......... .......... .......... .......... .......... 289 ATTGAACTTG AGTGATATAT TATATAAAAA CTAACAGTCA ATTAGTAAAT TTATTAGAAA 50673 .......... .......... .......... .......... .......... .......... 289 AACAAATAAT CATACTAACA TATTTAAAAT TTACTACCAA CAATTGTTGT GGTGGAGTGG 50733 .......... .......... .......... .......... .......... .......... 289 TAAGTACTTT TTCATCCTTA ACTAAGAGGT CTCATTTTGA TTCCCCTTGG GTACATAGTC 50793 .......... .......... .......... .......... .......... .......... 289 GCTTTTGTTA GGGAACACTT TGCCTCATAA TGTAGGACTT CCCGGCGTGA ATCCGAATTT 50853 .......... .......... .......... .......... .......... .......... 289 AGTCGAGCTC TAATGTGGGT ACCAGACACC AGATAGAAAA CAAAACAAAA AATTCAAATT 50913 .......... .......... .......... .......... .......... .......... 289 TAATGGTAAA TTACCAACGT AAATTTTCTG AAAATTGCAA ACCAATTATC AATATATCCG 50973 .......... .......... .......... .......... .......... .......... 289 AAAAATCAGA TATTTGTTAC TATAATTACC AACGGAATCG AATAATGAAG AAATTTTTTT 51033 .......... .......... .......... .......... .......... .......... 289 TACCAACTCC TTTCAATTTG TTAGTAAAGG TACTATCGAT ATACTAACCT GAAATTAGTT 51093 .......... .......... .......... .......... .......... .......... 289 GGTGAATTTA CCAACGAAAA TTTAAGGGTC ATGTTTGAAA ATTTTGTAAC AACATCTTTG 51153 .......... .......... .......... .......... .......... .......... 289 GGTGTTTTAC CAACTGATAT TTGATTGGTA AGTTTACCAA CAAATAAAAA TCAGTTGGTA 51213 .......... .......... .......... .......... .......... .......... 289 ATATTTACCG ACGAGCCTTT TAGAAACGGA TTAACATAAG TTGACATTTG GTTGGTAACT 51273 .......... .......... .......... .......... .......... .......... 289 CAGATTTGCT AACCAATTTG ATACATTTAC CAACAATCTT TTTTGTTGGT AATTAAGGTT 51333 .......... .......... .......... .......... .......... .......... 289 CCTTTTGTAG TTAACAATTA TTCAACCTCT TTCAACAACA TAAATAGATT GTAAGAATTT 51393 .......... .......... .......... .......... .......... .......... 289 TTTAATCCTG TGCAAAATTA AAATAAAAGA CTTTCCAACA ACAACAACAA AAATATGGTG 51453 .......... .......... .......... .......... .......... .......... 289 CACTTGGTTC AATTCACCCG ACCGAGAAAA AATAAATTTG AGCTCAAATT TTGTGATTCA 51513 .......... .......... .......... .......... .......... .......... 289 TTGCTAACCC AACTTAAATA TTGAAGCTTT ATCCATCAAT GGTGGAAGTA TTTTATGTAA 51573 .......... .......... .......... .......... .......... .......... 289 CATCTCACAA TTTGAAATAG GTAGGAATAG ACTAAGAAAC TAAAATTAAT ATTTTTTTGG 51633 .......... .......... .......... .......... .......... .......... 289 AAAGAAAGAG AAATCTGAAT TTTTTTTTTC TAAGTTAAGA AAGTGAGTTT TGGTCATTTT 51693 .......... .......... .......... .......... .......... .......... 289 CAAACGATCA TAACTTCTAC CTCATAATGA GTTAGGCGTA GTTCTTGATA TGTTTGGAAA 51753 .......... .......... .......... .......... .......... .......... 289 GAACTTGGAG ATATCTTTCC AACGCAAACC GAGTTTGCAC ATTTTCGGTA TCCTTTGATG 51813 ||||||| .......... .......... .......... .......... .......... ..CTTTGAT- 296 GAGATATATG TTGGGAACGA CAAGGCACTA ACAAAGAATG CCTGACAGGA TAACAACGGA 51873 | | || ||||||| || ||||||||| |||||||||| |||||||||| ||||| |||| -ACCACTTTG TTGGGAATGA AAAGGCACTA ACAAAGAATG CCTGACAGGA TAACAGCGGA 355 AGAATACCCA AGTCTATACT TTCCCTTCTC GATTTGAACC AAGAGAAGAC AAACAACCAC 51933 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATACCCA ATTCTATACT TTCCCTTCTC GATTTGAACC AAGAGAAGAC AAACAACCAC 415 AAGCAATATG ATAGTAAGGC AGCAAGTAAT TCAACCAAAC AAATATAA 51981 |||||||||| |||||||||| |||||||||| |||| ||| ||| | || AAGCAATATG ATAGTAAGGC AGCAAGTAAT TCAAAAAAAA AAAAAAAA 463 hqPGS_C04HBa0031H05.1+_SGN-E577955+ (49114 49134,51806 51981) ******************************************************************************** EST sequence 51 +strand 520 n (File: SGN-E326015+) 1 TCGTTATCTT AGCCACTCTT CTGATGCCTA CTTAGTCCCG CACTTAATCT TGTGATAAAT 61 TTATTAAAGG CTTATTAATT TGCATTTAAC ATGCATGTGA CTCTCAAACT TGACGTTTTT 121 GCTATTCACT TAAGTTATGT GCAAATAGTA ATGGTCATTG TGTGTTTAAA TGCATTAAGT 181 CTTGCCTTAG CGTTCTCTCA AAGTGGTTCA TGCATGCTGG AATTTTTTTG TGTTTAGGTT 241 ATCTTTTAGT AGCTTAACGT TTTGATTTCA TTCTCTTTAG CTCCTTTATT ATTTACTCAT 301 AGAAAGGCTA AAAAAAAAGA ATTTGGATTT GTCTGCAAAA ATAAATAAAT AATTTTTTAG 361 TCCACATTGT GATTCCTTGG ATGGTGTTCA AAGCATCTGT ATGTATGTTA TACTTGGGAG 421 TTTGATTTCA TCTTCTTCTA TGTTGGGAAA GACAAGGCAC TAACAAAGAA TGTCTAACAA 481 GATAACAGCG GAAGAATACC CAAGTCTATA CTTTCCCTTT Predicted gene structure (within gDNA segment 46732 to 52520): Exon 1 51820 51900 ( 81 n); cDNA 439 519 ( 81 n); score: 0.938 MATCH C04HBa0031H05.1+ SGN-E326015+ 0.938 81 0.156 C PGS_C04HBa0031H05.1+_SGN-E326015+ (51820 51900) Alignment (genomic DNA sequence = upper lines): TATGTTGGGA ACGACAAGGC ACTAACAAAG AATGCCTGAC AGGATAACAA CGGAAGAATA 51879 |||||||||| | |||||||| |||||||||| |||| || || | ||||||| |||||||||| TATGTTGGGA AAGACAAGGC ACTAACAAAG AATGTCTAAC AAGATAACAG CGGAAGAATA 498 CCCAAGTCTA TACTTTCCCT T 51900 |||||||||| |||||||||| | CCCAAGTCTA TACTTTCCCT T 519 hqPGS_C04HBa0031H05.1+_SGN-E326015+ (51820 51900) ******************************************************************************** EST sequence 13 +strand 522 n (File: SGN-E379905+) 1 TTTAATATAA TTTTCTGAAT TCCCTAATTA GAATTTTTTA TTGCATTCGA TCTAAGGATT 61 AAGGGTGTAG TCTATTAATC AATAATATAC ATTATGTATT ATGATTCTCA AGTGACAAAA 121 AATAGTTAGT AATTCTTTTT TATGTGTTTA AGCTTTATTA AATAGAGTTA TCTGTTACGT 181 ATGATAATAA TAAGTAACAA GTATGCTATA AAATTAGTCA AAATATTGTT GGGAAAGACA 241 AGACACTAAC AAAGAATGCC TGACAGGATA ACAGCGGAAG AATACCCNAG TCTATACTTT 301 CCCTTTTCGA TTTGAACCAA GAGAAAACAA ACAACCACNA GCAATATGAT AGTAAGGCAG 361 CAAGTAATTC TACCAAACAA ATATTACAAG ACAATAATAA ACCAATCACA CAAGACATCA 421 AGATTTACGT GGAANACCCT TCGATGTGAA GAGTAGNAAA CCACGGGACC AAAAGCTCCA 481 CTATAATCAC CAAGAGTTAC AATATTGTTC TCCAAAATTG GC Predicted gene structure (within gDNA segment 48809 to 52727): Exon 1 51822 52117 ( 296 n); cDNA 227 522 ( 296 n); score: 0.946 MATCH C04HBa0031H05.1+ SGN-E379905+ 0.946 296 0.567 C PGS_C04HBa0031H05.1+_SGN-E379905+ (51822 52117) Alignment (genomic DNA sequence = upper lines): TGTTGGGAAC GACAAGGCAC TAACAAAGAA TGCCTGACAG GATAACAACG GAAGAATACC 51881 ||||||||| |||||| ||| |||||||||| |||||||||| ||||||| || |||||||||| TGTTGGGAAA GACAAGACAC TAACAAAGAA TGCCTGACAG GATAACAGCG GAAGAATACC 286 CAAGTCTATA CTTTCCCTTC TCGATTTGAA CCAAGAGAAG ACAAACAACC ACAAGCAATA 51941 | |||||||| ||||||||| |||||||||| ||||||||| |||||||||| || ||||||| CNAGTCTATA CTTTCCCTTT TCGATTTGAA CCAAGAGAAA ACAAACAACC ACNAGCAATA 346 TGATAGTAAG GCAGCAAGTA ATTCAACCAA ACAAATATAA CTAGGCAATA ATAAACCAAT 52001 |||||||||| |||||||||| |||| ||||| |||||||| | | || ||||| |||||||||| TGATAGTAAG GCAGCAAGTA ATTCTACCAA ACAAATATTA CAAGACAATA ATAAACCAAT 406 CACACAAGAC ACCAAGATTT ACGTGGAAAA CCCTTCGATG TGAAGAGTAA AAAACCACGG 52061 |||||||||| | |||||||| |||||||| | |||||||||| ||||||||| ||||||||| CACACAAGAC ATCAAGATTT ACGTGGAANA CCCTTCGATG TGAAGAGTAG NAAACCACGG 466 GACCAAAAGC TCCACTGTAA TCACCAAGAG TTACAATATT GTTCTCCAAA ATTGGC 52117 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||| GACCAAAAGC TCCACTATAA TCACCAAGAG TTACAATATT GTTCTCCAAA ATTGGC 522 hqPGS_C04HBa0031H05.1+_SGN-E379905+ (51822 52117) ******************************************************************************** EST sequence 18 +strand 350 n (File: SGN-E201144+) 1 TTTAATATAA TTTTCTGAAT TCCCTAATTA GAATTTTTTA TTGCATTCGA TCTAAGGATT 61 AAGGGTGTAG TCTATTAATC AATAATATAC ATTATGTATT ATGATTCTCA AGTGACAAAA 121 AATAGTTAGT AATTCTTTTT TATGTGTTTA AGCTTTATTA AATAGAGTTA TCTGTTACGT 181 ATGATAATAA TAAGTAACAA GTATGCAATA AAATTAGTCA AAATATTGTT GGGAAAGACA 241 AGACACTAAC AAAGAATGCC TGACAGGATA ACAGCGGAAG AATACCCAAG TCTATACTTT 301 CCCTTTTCGA TTTGAACCAA GAGAAAACAA ACAACCACAA GCAATATGAT Predicted gene structure (within gDNA segment 48809 to 52555): Exon 1 51822 51945 ( 124 n); cDNA 227 350 ( 124 n); score: 0.960 MATCH C04HBa0031H05.1+ SGN-E201144+ 0.960 124 0.354 C PGS_C04HBa0031H05.1+_SGN-E201144+ (51822 51945) Alignment (genomic DNA sequence = upper lines): TGTTGGGAAC GACAAGGCAC TAACAAAGAA TGCCTGACAG GATAACAACG GAAGAATACC 51881 ||||||||| |||||| ||| |||||||||| |||||||||| ||||||| || |||||||||| TGTTGGGAAA GACAAGACAC TAACAAAGAA TGCCTGACAG GATAACAGCG GAAGAATACC 286 CAAGTCTATA CTTTCCCTTC TCGATTTGAA CCAAGAGAAG ACAAACAACC ACAAGCAATA 51941 |||||||||| ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CAAGTCTATA CTTTCCCTTT TCGATTTGAA CCAAGAGAAA ACAAACAACC ACAAGCAATA 346 TGAT 51945 |||| TGAT 350 hqPGS_C04HBa0031H05.1+_SGN-E201144+ (51822 51945) ******************************************************************************** EST sequence 69 -strand 425 n (File: SGN-E380017-) 1 CATCAAGATT TACGTGGAAA CCCCTTCGAT GTGAAGAGTA AAAAACCACG GGTCCAAAAG 61 CTCCACTATA ATCACCAAGA GTTACAATAT TGTTCTCCAA AATTGGCCAC AAAACAAAGT 121 GTCAAACAAC GAGCAACAAC AAAATAAGAT TGCTCCAAAT CTAGAGAATT AAAGGAGCAA 181 AATCACCAAT TTCGCAGCTA CTGTTCACGA CAGCAAAACT GAAGCTGCAG ACCACCAAAT 241 CCAACTCTGT CAGTTCCTAA TCAAAGATTG AGATGAAGAT AATATGCTGT CCAAAAATCA 301 GCTCAATCGG ACAAGAAACG AAGCGGGAAT CGCAATTTGA AGTTGGTTGT TATGGCTGGA 361 TTTTTGACTG CGAATTTCTC TCTTTTTTCT CTCTTTTAGC TGCTGAAAAA CTCTCTCTGA 421 AAAAT Predicted gene structure (within gDNA segment 51374 to 53745): Exon 1 52011 52387 ( 377 n); cDNA 1 379 ( 379 n); score: 0.928 MATCH C04HBa0031H05.1+ SGN-E380017- 0.928 377 0.887 C PGS_C04HBa0031H05.1+_SGN-E380017- (52011 52387) Alignment (genomic DNA sequence = upper lines): CACCAAGATT TACGTGGAAA ACCCTTCGAT GTGAAGAGTA AAAAACCACG GGACCAAAAG 52070 || ||||||| |||||||||| ||||||||| |||||||||| |||||||||| || ||||||| CATCAAGATT TACGTGGAAA CCCCTTCGAT GTGAAGAGTA AAAAACCACG GGTCCAAAAG 60 CTCCACTGTA ATCACCAAGA GTTACAATAT TGTTCTCCAA AATTGGCCAC AAAAC-AAGT 52129 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| CTCCACTATA ATCACCAAGA GTTACAATAT TGTTCTCCAA AATTGGCCAC AAAACAAAGT 120 GTCAAACAAC GAGCAACAAC AAAATAAGAC TGTACCAAAT CTAGAGAATT AAAGTTGTGA 52189 |||||||||| |||||||||| ||||||||| || |||||| |||||||||| |||| | | GTCAAACAAC GAGCAACAAC AAAATAAGAT TGCTCCAAAT CTAGAGAATT AAAGGAGCAA 180 AATCACCAAT TTCGCAGCTA CTGTTCACGA CAGCAAAACT GAAGCTGCAG ACCATAAAAT 52249 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| |||| AATCACCAAT TTCGCAGCTA CTGTTCACGA CAGCAAAACT GAAGCTGCAG ACCACCAAAT 240 TCAACTCTGT TAGTTCCTAA TCAAAGATTG AGATGAATAT AATATGCTGT CCAAAAATCA 52309 ||||||||| ||||||||| |||||||||| ||||||| || |||||||||| |||||||||| CCAACTCTGT CAGTTCCTAA TCAAAGATTG AGATGAAGAT AATATGCTGT CCAAAAATCA 300 GCTCAATCGG ACAAGAAACG AAGCGGGAAT CGCAATTTGA AGTTGGCTGT TAGGGCT-GA 52368 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| || |||| || GCTCAATCGG ACAAGAAACG AAGCGGGAAT CGCAATTTGA AGTTGGTTGT TATGGCTGGA 360 ATTTTGACTG CGAAAAACT 52387 ||||||||| |||| || TTTTTGACTG CGAATTTCT 379 hqPGS_C04HBa0031H05.1+_SGN-E380017- (52011 52387) ******************************************************************************** EST sequence 70 +strand 425 n (File: SGN-E380017+) 1 ATTTTTCAGA GAGAGTTTTT CAGCAGCTAA AAGAGAGAAA AAAGAGAGAA ATTCGCAGTC 61 AAAAATCCAG CCATAACAAC CAACTTCAAA TTGCGATTCC CGCTTCGTTT CTTGTCCGAT 121 TGAGCTGATT TTTGGACAGC ATATTATCTT CATCTCAATC TTTGATTAGG AACTGACAGA 181 GTTGGATTTG GTGGTCTGCA GCTTCAGTTT TGCTGTCGTG AACAGTAGCT GCGAAATTGG 241 TGATTTTGCT CCTTTAATTC TCTAGATTTG GAGCAATCTT ATTTTGTTGT TGCTCGTTGT 301 TTGACACTTT GTTTTGTGGC CAATTTTGGA GAACAATATT GTAACTCTTG GTGATTATAG 361 TGGAGCTTTT GGACCCGTGG TTTTTTACTC TTCACATCGA AGGGGTTTCC ACGTAAATCT 421 TGATG Predicted gene structure (within gDNA segment 58478 to 55999): Exon 1 57260 57250 ( 11 n); cDNA 1 11 ( 11 n); score: 0.727 Intron 1 57249 57211 ( 39 n); Pd: 0.921 (s: 0), Pa: 0.603 (s: 0.78) Exon 2 57210 56798 ( 413 n); cDNA 12 425 ( 414 n); score: 0.925 MATCH C04HBa0031H05.1- SGN-E380017+ 0.925 424 0.998 C PGS_C04HBa0031H05.1-_SGN-E380017+ (57260 57250,57210 56798) Alignment (genomic DNA sequence = upper lines): ATTCTTATGA GGCAAATATA AGCCTATTTA GGTCTTATTT TCATACATAG AGTTTTTTTC 57201 ||| || || | || |||||| ATTTTTCAGA G......... .......... .......... .......... AGAGTTTTTC 21 AGCAGCCAAA AAGAGAGAAA AAGAGCAGTT TTTCGCAGTC -AAAATTCAG CCTTAACAAC 57142 ||||| | || |||||||||| || || ||||||||| ||||| ||| || ||||||| AGCAG-CTAA AAGAGAGAAA AAAGAGAGAA ATTCGCAGTC AAAAATCCAG CCATAACAAC 80 CAACTTCAAA TTGCGATTCC CGCTTCGTTT CTTGTCCGAT TGAGCTGATT TTTGGACAGC 57082 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACTTCAAA TTGCGATTCC CGCTTCGTTT CTTGTCCGAT TGAGCTGATT TTTGGACAGC 140 ATATTATCTT AATCTCAATA TTTGATTAGG AACTAACATA GTTGGATTTG GTAGTCTGCA 57022 |||||||||| |||||||| |||||||||| |||| ||| | |||||||||| || ||||||| ATATTATCTT CATCTCAATC TTTGATTAGG AACTGACAGA GTTGGATTTG GTGGTCTGCA 200 GCTTCAGTTT TGCTATCGTG AACAGTAGCT GTGAAATTGG TGATTTTGCT CCTTTAATTC 56962 |||||||||| |||| ||||| |||||||||| | |||||||| |||||||||| |||||||||| GCTTCAGTTT TGCTGTCGTG AACAGTAGCT GCGAAATTGG TGATTTTGCT CCTTTAATTC 260 TCTAGATTTG GTGCAATCTT ATTTTGTTGT TGCTCGTTGT TTGGCAC-TT GTTTTGTGGC 56903 |||||||||| | |||||||| |||||||||| |||||||||| ||| ||| || |||||||||| TCTAGATTTG GAGCAATCTT ATTTTGTTGT TGCTCGTTGT TTGACACTTT GTTTTGTGGC 320 CAATTTTGGA GAACAATATT GTAACTCTTG GTGATTATAG TGGAGCTTTT GGTCCCGTGG 56843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| CAATTTTGGA GAACAATATT GTAACTCTTG GTGATTATAG TGGAGCTTTT GGACCCGTGG 380 TTTTTTACTC TTCACATCGA AGGGTTTTCC ACGTAAATTT TGGTG 56798 |||||||||| |||||||||| |||| ||||| |||||||| | || || TTTTTTACTC TTCACATCGA AGGGGTTTCC ACGTAAATCT TGATG 425 hqPGS_C04HBa0031H05.1-_SGN-E380017+ (57260 57250,57210 56798) ******************************************************************************** EST sequence 4 -strand 489 n (File: SGN-E577955-) 1 ATTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTGAATTACT TGCTGCCTTA 61 CTATCATATT GCTTGTGGTT GTTTGTCTTC TCTTGGTTCA AATCGAGAAG GGAAAGTATA 121 GAATTGGGTA TTCTTCCGCT GTTATCCTGT CAGGCATTCT TTGTTAGTGC CTTTTCATTC 181 CCAACAAAGT GGTATCAAAG CATTGGTTAT TGTTGATTGT CGTTTTGAAT GATGGAGGCA 241 AATATGAGCA AAATGGTGTG TTTAAATGGT AGTAACTATC ATATTTGGAA AGACAAGTTT 301 ATGAAAAGCA CTTATGTGAA ATACATATAC GCAGACCAAA CATTCTGTTT TTTTGGAGCT 361 AAATCAGTGC CCTGAGGATT ATTAATACCA GCCTTATCAT CCTCAGAATT ATACATTGAT 421 TGATTATCAG GATCTCACTC ATCCTCAAAA TTAATAGCCT CATAATCATC ATGAGCAATA 481 TTCTTATTT Predicted gene structure (within gDNA segment 57764 to 53934): Exon 1 56787 56504 ( 284 n); cDNA 8 292 ( 285 n); score: 0.917 MATCH C04HBa0031H05.1- SGN-E577955- 0.917 284 0.581 C PGS_C04HBa0031H05.1-_SGN-E577955- (56787 56504) Alignment (genomic DNA sequence = upper lines): TTGGTTTATT ATTGCCTTGT TATATTTGTT TGGTTGAATT ACTTGCTGCC TTACTATCAT 56728 || ||| || || || | | | ||| || | ||||||| |||||||||| |||||||||| TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTGAATT ACTTGCTGCC TTACTATCAT 67 ATTGCTTATG GTTGTTTGTC TTCTCTTGGT TCAAATCGAG AAGGGAAAGT ATAGACTTGG 56668 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| ATTGCTTGTG GTTGTTTGTC TTCTCTTGGT TCAAATCGAG AAGGGAAAGT ATAGAATTGG 127 GTATTCTTCC GCTGTTATCC TGTCAGGCAT TCTTTGTTAG TGTCTTGTCT TTCCCAACAA 56608 |||||||||| |||||||||| |||||||||| |||||||||| || ||| || |||||||||| GTATTCTTCC GCTGTTATCC TGTCAGGCAT TCTTTGTTAG TGCCTTTTCA TTCCCAACAA 187 AGTGGTATCA GAGCATTGGT TATTGTTGAT TGTCTTTTTG AATGATGGAG GAAAATATGA 56548 |||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| | |||||||| AGTGGTATCA AAGCATTGGT TATTGTTGAT TGTCGTTTTG AATGATGGAG GCAAATATGA 247 GCAAAATGGT GTGTTTAAAT -GTAGTAACT ATCATATTTG GAAAG 56504 |||||||||| |||||||||| ||||||||| |||||||||| ||||| GCAAAATGGT GTGTTTAAAT GGTAGTAACT ATCATATTTG GAAAG 292 hqPGS_C04HBa0031H05.1-_SGN-E577955- (56787 56504) ******************************************************************************** EST sequence 12 -strand 522 n (File: SGN-E379905-) 1 GCCAATTTTG GAGAACAATA TTGTAACTCT TGGTGATTAT AGTGGAGCTT TTGGTCCCGT 61 GGTTTNCTAC TCTTCACATC GAAGGGTNTT CCACGTAAAT CTTGATGTCT TGTGTGATTG 121 GTTTATTATT GTCTTGTAAT ATTTGTTTGG TAGAATTACT TGCTGCCTTA CTATCATATT 181 GCTNGTGGTT GTTTGTTTTC TCTTGGTTCA AATCGAAAAG GGAAAGTATA GACTNGGGTA 241 TTCTTCCGCT GTTATCCTGT CAGGCATTCT TTGTTAGTGT CTTGTCTTTC CCAACAATAT 301 TTTGACTAAT TTTATAGCAT ACTTGTTACT TATTATTATC ATACGTAACA GATAACTCTA 361 TTTAATAAAG CTTAAACACA TAAAAAAGAA TTACTAACTA TTTTTTGTCA CTTGAGAATC 421 ATAATACATA ATGTATATTA TTGATTAATA GACTACACCC TTAATCCTTA GATCGAATGC 481 AATAAAAAAT TCTAATTAGG GAATTCAGAA AATTATATTA AA Predicted gene structure (within gDNA segment 57514 to 53758): Exon 1 56904 56607 ( 298 n); cDNA 1 298 ( 298 n); score: 0.953 Intron 1 56606 54437 (2170 n); Pd: 0.000 (s: 0.98), Pa: 0.000 (s: 0) Exon 2 54436 54426 ( 11 n); cDNA 299 309 ( 11 n); score: 0.909 MATCH C04HBa0031H05.1- SGN-E379905- 0.953 309 0.592 C PGS_C04HBa0031H05.1-_SGN-E379905- (56904 56607,54436 54426) Alignment (genomic DNA sequence = upper lines): GCCAATTTTG GAGAACAATA TTGTAACTCT TGGTGATTAT AGTGGAGCTT TTGGTCCCGT 56845 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAATTTTG GAGAACAATA TTGTAACTCT TGGTGATTAT AGTGGAGCTT TTGGTCCCGT 60 GGTTTTTTAC TCTTCACATC GAAGGGTTTT CCACGTAAAT TTTGGTGTCT TGTGTGATTG 56785 ||||| ||| |||||||||| ||||||| || |||||||||| ||| ||||| |||||||||| GGTTTNCTAC TCTTCACATC GAAGGGTNTT CCACGTAAAT CTTGATGTCT TGTGTGATTG 120 GTTTATTATT GCCTTGTTAT ATTTGTTTGG TTGAATTACT TGCTGCCTTA CTATCATATT 56725 |||||||||| | ||||| || |||||||||| | |||||||| |||||||||| |||||||||| GTTTATTATT GTCTTGTAAT ATTTGTTTGG TAGAATTACT TGCTGCCTTA CTATCATATT 180 GCTTATGGTT GTTTGTCTTC TCTTGGTTCA AATCGAGAAG GGAAAGTATA GACTTGGGTA 56665 ||| ||||| |||||| ||| |||||||||| |||||| ||| |||||||||| |||| ||||| GCTNGTGGTT GTTTGTTTTC TCTTGGTTCA AATCGAAAAG GGAAAGTATA GACTNGGGTA 240 TTCTTCCGCT GTTATCCTGT CAGGCATTCT TTGTTAGTGT CTTGTCTTTC CCAACAAAGT 56605 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TTCTTCCGCT GTTATCCTGT CAGGCATTCT TTGTTAGTGT CTTGTCTTTC CCAACAAT.. 298 GGTATCAGAG CATTGGTTAT TGTTGATTGT CTTTTTGAAT GATGGAGGAA AATATGAGCA 56545 .......... .......... .......... .......... .......... .......... 298 AAATGGTGTG TTTAAATGTA GTAACTATCA TATTTGGAAA GGCAAGATGA AAGATCTTCT 56485 .......... .......... .......... .......... .......... .......... 298 ATTTGTCAAG AAGATGCATT TAACTGTGTT TGCTTCTAAT AAGCCTCAGT CTTTGAATGA 56425 .......... .......... .......... .......... .......... .......... 298 TGAAGAATGA GAATTTGAGC ATTTGCAGGT TTGTGGCTAT ATTAGACAAT GGGTTGAAGA 56365 .......... .......... .......... .......... .......... .......... 298 TAATGTTAGA AATCATATTG TGAATGAGAC ACATGCCAAA AGTTTGTAGG ACAAGCTCGA 56305 .......... .......... .......... .......... .......... .......... 298 GAAACTTTAT GCTTCGAAGA CTGGCAACAA CAAGTTGTTC CTATTGAAAC GATTAATGAA 56245 .......... .......... .......... .......... .......... .......... 298 TATCAGGTAT AAAGAGGGCA CTCCTATTTC TGATCATATT AATGATTTTC AGGGTATTCT 56185 .......... .......... .......... .......... .......... .......... 298 TGACCAGCTG TCCGGAATGG GTGTAAAGTT TGATGATGAG ATACAGGGAC TTTGGCTTCT 56125 .......... .......... .......... .......... .......... .......... 298 TAATACTCTT CCAGACTCTT GGGAAACTCT TCGAGTTTCT TTGACTAATT CTGCTCCCAG 56065 .......... .......... .......... .......... .......... .......... 298 TGGTGTTGTA ACCATGGAAT ATACTAAGAG TGGTGTCTTG AATGAATAAA TGAGAAGAAG 56005 .......... .......... .......... .......... .......... .......... 298 ATCTCAAGCC TCATCTTCTT CAGCTTCAAA CTCCGATATT TTGGTTACTG AAGATAGGGG 55945 .......... .......... .......... .......... .......... .......... 298 GAGAAACAAG TCCAGAGGTC AGAATGATAG AGGTAAAAGT AGAAGCAAGT CAAAGTATAA 55885 .......... .......... .......... .......... .......... .......... 298 ATACAAGAAT ATTACATGTG ACTATTGCCA CAAGAATGGG CATATCATGA AATATTGTTA 55825 .......... .......... .......... .......... .......... .......... 298 CAAGCACAAG AGAGATATGA CACAACAAAA GAGAGAAGGC GATAATGAAA ATCATGTTGC 55765 .......... .......... .......... .......... .......... .......... 298 TGTTGTTGCT AATGATAATC TTCTTGTTTC TTGTGATGCA AATGCCATTA ATCTTGTTCG 55705 .......... .......... .......... .......... .......... .......... 298 TAATGAGTCT AGCTGGTTTG TGGATTCTGG TGCTACTTCT CATGTCACGC CAAAGAAGTA 55645 .......... .......... .......... .......... .......... .......... 298 ATTATTTTCT TCTTATACTC CAGATAATTT TGGAACGTTG AAAATGGTCA ATAATCATGA 55585 .......... .......... .......... .......... .......... .......... 298 AGTTGAAGTT ATTGGCGTTG GGACAGTTTG TTTGGAAAGT AACAATGGTT CCAAACTAGT 55525 .......... .......... .......... .......... .......... .......... 298 TCTCAATAAT GTCAAGCATG CTCCAGATGT TCGCTTGAAT TTGATTTTTG TGGGATATCT 55465 .......... .......... .......... .......... .......... .......... 298 TAATGATGAG GGTTATGTTA ATACACTTGG TGTTGGCCAG TGGAAGCTTA CTAGAGGTTT 55405 .......... .......... .......... .......... .......... .......... 298 GATGGTTGTA GCCCGTGGTG ACAAGTTGTT TAACTTGTAT GTATTTCAGG GCTCCATGTC 55345 .......... .......... .......... .......... .......... .......... 298 CAGAGACTCA GTAAATTTGG TGGAGAATGA TACTTCATCA GAGTTATGGC ATAGAAGGCT 55285 .......... .......... .......... .......... .......... .......... 298 GATTCATATG AGCGAGAAGG GGATTGATAG TTTGGCTAAG AAAAATTTTC TTTCTGGAGT 55225 .......... .......... .......... .......... .......... .......... 298 GAAACAAGCA AAGTTGAAGA AATGTGTTCA TTGCTTAGCC GGTAAACAGA AAAGAGTTTC 55165 .......... .......... .......... .......... .......... .......... 298 TTTTCAGAGT CATCCGCCTT CAAGAAATCT TGATTTGCTG GAGTTGGTAC ATTCTGATTT 55105 .......... .......... .......... .......... .......... .......... 298 GTGTGGTCCT TTTAAGGTAA GATCTCATGG TGGTGCACTT TACTTTGTGA CTTTTATTGA 55045 .......... .......... .......... .......... .......... .......... 298 TGATCATTCT CGCAAACTCT GGGTATTTCC TTTGAAGTCC AAGGATCAAG TACTTGATGT 54985 .......... .......... .......... .......... .......... .......... 298 GTTCAAGAGT TTTCAGTCCT TGGTTGAAAG ACAAACAGGG AAGACACTGA AATGCATCCG 54925 .......... .......... .......... .......... .......... .......... 298 CTCAGATAAT GGTGGTGAGT ATATTGGTCC TTTTGATAGA TATTGAAGAG ATCAGGGTAT 54865 .......... .......... .......... .......... .......... .......... 298 TAGGCATCAG AAAACTCCTC CAAAGACTCC TCAGTTAAAT GGTTTAGCAG AGAGGATGAA 54805 .......... .......... .......... .......... .......... .......... 298 CAGAACTCTA GTTGAGAGGG TTAGATGTAT GCTTTCAGAT GCTAAGCTGT CAGATTCCTT 54745 .......... .......... .......... .......... .......... .......... 298 TTGGGCAGAA GCACTTAATA CTGCTGCTTA TGTTATCAAT TTATCTCCTG TTGTTGCTTT 54685 .......... .......... .......... .......... .......... .......... 298 AGATGGTGAT GCCCCTGATA GAGTTTGGAC TAGTAAGAAT GTTTCTTATG ATCATCTTAG 54625 .......... .......... .......... .......... .......... .......... 298 AGTCTTTGGG TGTAAAGCCT TTGTACATGT TCCTAAGGAT GAAAGGTCAA AGTTGGATGT 54565 .......... .......... .......... .......... .......... .......... 298 TAAAACTAGG CAGTGTATCT TCATTGGTTA TGGTCAAGAT GAATTTGACT ATCGTTTCTA 54505 .......... .......... .......... .......... .......... .......... 298 TGATCCTGTT GACAAGAAAC TTGTTAGAAG CCATGATGTT GTGTTCTTTG AAGACCAAAC 54445 .......... .......... .......... .......... .......... .......... 298 AATTGAAGAT TTTGACAAA 54426 || |||||| || ........AT TTTGACTAA 309 hqPGS_C04HBa0031H05.1-_SGN-E379905- (56904 56607) ******************************************************************************** EST sequence 17 -strand 350 n (File: SGN-E201144-) 1 ATCATATTGC TTGTGGTTGT TTGTTTTCTC TTGGTTCAAA TCGAAAAGGG AAAGTATAGA 61 CTTGGGTATT CTTCCGCTGT TATCCTGTCA GGCATTCTTT GTTAGTGTCT TGTCTTTCCC 121 AACAATATTT TGACTAATTT TATTGCATAC TTGTTACTTA TTATTATCAT ACGTAACAGA 181 TAACTCTATT TAATAAAGCT TAAACACATA AAAAAGAATT ACTAACTATT TTTTGTCACT 241 TGAGAATCAT AATACATAAT GTATATTATT GATTAATAGA CTACACCCTT AATCCTTAGA 301 TCGAATGCAA TAAAAAATTC TAATTAGGGA ATTCAGAAAA TTATATTAAA Predicted gene structure (within gDNA segment 57567 to 53758): Exon 1 56732 56608 ( 125 n); cDNA 1 125 ( 125 n); score: 0.976 MATCH C04HBa0031H05.1- SGN-E201144- 0.976 125 0.357 C PGS_C04HBa0031H05.1-_SGN-E201144- (56732 56608) Alignment (genomic DNA sequence = upper lines): ATCATATTGC TTATGGTTGT TTGTCTTCTC TTGGTTCAAA TCGAGAAGGG AAAGTATAGA 56673 |||||||||| || ||||||| |||| ||||| |||||||||| |||| ||||| |||||||||| ATCATATTGC TTGTGGTTGT TTGTTTTCTC TTGGTTCAAA TCGAAAAGGG AAAGTATAGA 60 CTTGGGTATT CTTCCGCTGT TATCCTGTCA GGCATTCTTT GTTAGTGTCT TGTCTTTCCC 56613 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGGTATT CTTCCGCTGT TATCCTGTCA GGCATTCTTT GTTAGTGTCT TGTCTTTCCC 120 AACAA 56608 ||||| AACAA 125 hqPGS_C04HBa0031H05.1-_SGN-E201144- (56732 56608) ******************************************************************************** EST sequence 16 +strand 576 n (File: SGN-E338580+) 1 TTCCTCTTCT CCTCTTCTTC CTCTTCCTCT TCTCCTCTTT CGAGTTCCGC TAGCCAGAAG 61 CAGCAGTCGC GCCGGCCGTC CTCCAGAAGC AGCAGCCGCA CTGTCCGCCA GAAGCAGCAA 121 CAACAGTCGT GTTGTCCACC AGAAGCAGCA GTAGCAGCCA CGCCGTCAAG CAGCCAGCAG 181 CAGCCGCGCG TGCCATCGAG CAACCAGCAG CAGCCGCACG TGCCGTCAAG CAACCAGCAG 241 CAGCCGCGTC GCGCCGTCCG TCATCAACCA GTCAGCAGCC AGCAGCCGCG CAGGACCGCA 301 GGTTTGTTTT TTGACTTTTG TTATTTTTTT TCTTGACTTC TTTCGTTTTT TTCTTTTTGA 361 TTTTGTTTTT GTTACTAGTT ATTGTGAATT TATTGTGATT TTATATATAT ATATATATAG 421 ATGGCTGAAC AAAAACAATT AAATATGGGT GTAGCTGATC AAAGTCAAAT AAGTATGGCT 481 GATTCTAGGA TAATACACCT AGTAATAGCA ATGATCCGTC CATTGGCACA GAAATAACAA 541 AAAAGAAAAA GAAAAGAAAA GGATCCTAGA TCTTTG Predicted gene structure (within gDNA segment 55990 to 62326): Exon 1 59682 59697 ( 16 n); cDNA 321 336 ( 16 n); score: 0.750 Intron 1 59698 60358 ( 661 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.88) Exon 2 60359 60593 ( 235 n); cDNA 337 565 ( 229 n); score: 0.819 MATCH C04HBa0031H05.1+ SGN-E338580+ 0.819 251 0.436 C PGS_C04HBa0031H05.1+_SGN-E338580+ (59682 59697,60359 60593) Alignment (genomic DNA sequence = upper lines): TTATTTTCGT AATTGAATGA GACTATGTCA ATGAGTTAAG TATTCCGCTG AGTTAAGTAA 59741 ||||||| | |||| TTATTTTTTT TCTTGA.... .......... .......... .......... .......... 336 GCTAGGGCAA GGGTCCACTC AAGGCCAACA ATGGTCATCG AATGCCAGCC ACTAGAGCTG 59801 .......... .......... .......... .......... .......... .......... 336 GGTATAAACA CCAGAAAATT GAAACACTGA ACCAAATCGC TTTTTTTTAT ATTTCGGTTT 59861 .......... .......... .......... .......... .......... .......... 336 GCATATTTCA ATTTTTGGTT TTGTATTCGG TATAGATCTT TGTATTTTTG TTATTTTGGT 59921 .......... .......... .......... .......... .......... .......... 336 TTGATTTTTG GTATGTAATT TTGTGTTATT CGATATTTCA ATTTATCAAA ATATTATATT 59981 .......... .......... .......... .......... .......... .......... 336 ATAATATATA TTTATATTAA TTATTAATAT AAAATTATAA ATATTATAAT TCAAAACAAA 60041 .......... .......... .......... .......... .......... .......... 336 AAATTTAAAA GTAAAAGTAG GTCAAACTTT CAAATTTACG TTTTCTTTTT CCAATATCCA 60101 .......... .......... .......... .......... .......... .......... 336 CTTTACACTT TATAGAGTAC ACAGACCCAC ACCTACCACC AAACTCCAAA TTACCAATCC 60161 .......... .......... .......... .......... .......... .......... 336 ATCTTCCTTT CAACTTTCAA ATTTCAAAGG TGAAAGACCA AAATAAAATT CCACTTTACC 60221 .......... .......... .......... .......... .......... .......... 336 TGCTGGTTGA TTGGTGGTAG GCGACAACAT GCGGCAGCAG TCAGCACAGG CGTCAACCGA 60281 .......... .......... .......... .......... .......... .......... 336 CTTCCCGTGG GCGGCGACCA CTATCAAGTT TGTATTTCTT ATTTTTCATT TAAGCTAACA 60341 .......... .......... .......... .......... .......... .......... 336 AGTGTCAAAA TCAATTTCTT CTTTCATTTA TTTTTCTTTT TGATTTTTGC TTTTGTTACT 60401 ||| ||||| || |||||||||| ||| ||||| |||||||||| .......... .......CTT CTTTC-GTT- TTTTTCTTTT TGA-TTTTGT TTTTGTTACT 376 AGTTAGTGTG TGAATTTATT GTGA-AATAA AT-TTTGT-T ATATAGATGG CTGAACAAAA 60458 ||||| | || |||||||||| |||| || || | | | | |||||||||| |||||||||| AGTTA-T-TG TGAATTTATT GTGATTTTAT ATATATATAT ATATAGATGG CTGAACAAAA 434 TCAATTAAAT ATGGGTGTGC CTGATCAAAG TCGAATAAGT ATGGTTAGTT CTACGGATAA 60518 ||||||||| |||||||| |||||||||| || ||||||| |||| | || ||| |||||| ACAATTAAAT ATGGGTGTAG CTGATCAAAG TCAAATAAGT ATGGCTGATT CTA-GGATAA 493 TACACCTACT AATAGCAATG ATGCGTCAAT TTTCACAGAG AAAACAAAAA GAAGAAAAGA 60578 |||||||| | |||||||||| || |||| || | |||||| | |||||||| | |||||| TACACCTAGT AATAGCAATG ATCCGTCCAT TGGCACAGAA ATAACAAAAA -AGAAAAAGA 552 AATAGATCCC GGATC 60593 || ||| ||||| AA-AGA-AAA GGATC 565 hqPGS_C04HBa0031H05.1+_SGN-E338580+ (60359 60593) ******************************************************************************** EST sequence 76 -strand 731 n (File: SGN-E539078-) 1 GTTGGCTCGA GATGTATGGC TTATTCCTAT GTCGAGTGTG TCATGGGAAT GTGCATTTAG 61 CACCGGTGAT CGTATCNTAG ATCCCTTTAG AAGTTTATTG ACTCCCAAAT GTGTGCAATG 121 TCTTATTTGT GTCCAAGATT GATTTAGATA AGAAACTAAG TCTATTTGTG TGNAAGAAAG 181 TTTGGAGTTT CTGAAAAAAA TTGAACTTGA TAAGATTTTT TAATTTTTAT TTATTTTGGA 241 AAAAATAAAA TACTTTTTGT GTTGTATCTT GTATGACATG TTGTTTTTCT TATTTATAGA 301 GATGGAAAAT AGTGGAAGAA ACTCTTCCAC TGTTGATATA TGATTGACTT GCAAGGGGTC 361 CAAGAGTCAA GACAATGAAG AAGACGTACA GTACTAAGTT TTATTAGTAA TTTTGTTGGC 421 ATGTGACACT TGAAAGTTGA AAGCGGTCTC ATGGAAGAAG GTCAAGAAAA CTCACTATTT 481 TTGTTTGTTA TTGTTTACAT TTGAATTGAA CGTGATCTTA TGGAAGAAAA CAAGAAGTTT 541 AAAATACATT GTTTGTTGCT CATTATTGTT TATTATGTTG GCACTAGAAT TCTCGAAAGT 601 TGAAACTTGA AAGTGGTCTC AACTCTCATG GAAGACTGTA TTGTTACTTG TTAGATTGTT 661 ATTATGTGGT ATTTGTGAAG ACATTAACTA CAATGCACTT TTGTTTTAGT GATATGTTAA 721 TTAAAAAAAA A Predicted gene structure (within gDNA segment 60994 to 63876): Exon 1 62315 62668 ( 354 n); cDNA 1 357 ( 357 n); score: 0.852 Intron 1 62669 62750 ( 82 n); Pd: 0.957 (s: 0.94), Pa: 0.843 (s: 0.88) Exon 2 62751 62987 ( 237 n); cDNA 358 605 ( 248 n); score: 0.730 MATCH C04HBa0031H05.1+ SGN-E539078- 0.803 591 0.808 C PGS_C04HBa0031H05.1+_SGN-E539078- (62315 62668,62751 62987) Alignment (genomic DNA sequence = upper lines): GTTGGCTCGA GATGTATTGG ATATTCCTAT GTCGAGTGTG GTATAAGAAT GTGCATTTAG 62374 |||||||||| ||||||| | ||||||||| |||||||||| || |||| |||||||||| GTTGGCTCGA GATGTATGGC TTATTCCTAT GTCGAGTGTG TCATGGGAAT GTGCATTTAG 60 TACCGGTGAT CGTATTCTTG ATCCCTTTAG AAGTTCATTG ACTCCCAAAT GTGTGCAATG 62434 ||||||||| ||||| | | |||||||||| ||||| |||| |||||||||| |||||||||| CACCGGTGAT CGTATCNTAG ATCCCTTTAG AAGTTTATTG ACTCCCAAAT GTGTGCAATG 120 CCTTATTTGT TTTCAAGATT GTCTTAGACA AGAAATTAAG CCTATTTGTG TTGAATAAAG 62494 ||||||||| | ||||||| | ||||| | ||||| |||| ||||||||| | || |||| TCTTATTTGT GTCCAAGATT GATTTAGATA AGAAACTAAG TCTATTTGTG TGNAAGAAAG 180 TTTGGAGTTT CTTGAAAAAA TTGAACTT-A -AAGACTTTT TTATTTTTTA TCTGTTTTTG 62552 |||||||||| || |||||| |||||||| | |||| |||| ||| |||||| | | |||| | TTTGGAGTTT CTGAAAAAAA TTGAACTTGA TAAGA-TTTT TTAATTTTTA TTTATTTTGG 239 -AAAAA-AAA A-AGTTATTG TGTTGTATCT TGTATGACAT ATTTGTTTTT GTTATTTATA 62609 ||||| ||| | | || ||| |||||||||| |||||||||| |||||||| ||||||||| AAAAAATAAA ATACTTTTTG TGTTGTATCT TGTATGACAT -GTTGTTTTT CTTATTTATA 298 GAGATGACAA ATAGTGGAAG AAACTCTTCC ATTGTTGATT TATGATTGAC TTGCAAGCGG 62669 |||||| || |||||||||| |||||||||| | ||||||| |||||||||| ||||||| | GAGATGGAAA ATAGTGGAAG AAACTCTTCC ACTGTTGATA TATGATTGAC TTGCAAGGG. 357 TGAGTTCAAT ATGTCATTTA TTTAATGATA TCATTATCAA TCTTAAAATT AGTATTCTAA 62729 .......... .......... .......... .......... .......... .......... 357 CAGTTTATTT TATCTTAAAA GGTCCAAGAG TCAAGACAAT GAAGAAAGAC GTAAATTAGT 62789 ||||||||| |||||||||| |||| ||||| ||| | || | .......... .......... .GTCCAAGAG TCAAGACAAT GAAG-AAGAC GTACAGTACT 395 AAGTTTTGTT TGTATTTTTG TTGGCACTTG AGACTTGAAA GTTGAAAGTA GTCTCATGGA 62849 ||||||| || ||| ||||| |||||| || | |||||||| |||||||| |||||||||| AAGTTTTATT AGTAATTTTG TTGGCATGTG ACACTTGAAA GTTGAAAGCG GTCTCATGGA 455 ACAAAATCAA AAATACTTAT TATTGTTTTT TGTTTTTGTT GACATTTG-A ---AA-TTGA 62904 | || |||| || ||| | |||| || || |||| ||||| ||||||| | || ||| AGAAGGTCAA GAAAACTCAC TATTTTTGTT TGTTATTGTT TACATTTGAA TTGAACGTGA 515 TCTTATGGAA GAAGGAAAGA AG--T----T ACATTGTTTG TTGATCATTA TTGTTTGTTA 62958 |||||||||| ||| |||| || | | |||||||||| ||| |||||| |||||| ||| TCTTATGGAA GAAAACAAGA AGTTTAAAAT ACATTGTTTG TTGCTCATTA TTGTTTATTA 575 TGTTGTCACT AGAA-AGTTG AAACTTGAAA 62987 ||||| |||| |||| | | ||| |||||| TGTTGGCACT AGAATTCTCG AAAGTTGAAA 605 hqPGS_C04HBa0031H05.1+_SGN-E539078- (62315 62668,62751 62987) ******************************************************************************** EST sequence 1 +strand 590 n (File: SGN-E550684+) 1 AGAATGTGAT AAGATGTTGT CTTTAGATGT GCCTACTAGG TGGAATTCCA CCTATTTGAT 61 GTTAGACACA GCAGAAAAGT TTGAGAAGGC TTTTGAGAGG TTTGATCTTT ATGATGGTAA 121 TTTTCATTCT TTTCTTGCTA CTGATGTTTG TGAAGATGGA AGTATCGCAG GGTCAATTCA 181 ATATGAAGAT TGGGCTAATG TGAGGAATGT CACAAAGTTT CTTGAAAAAT TTTATGAACT 241 CACTTTGAAA GTTTCAGGTT CACGGTATGT TACTTGTAAT GTTCATTTTG AAGATATATG 301 TGAACTTGAT GCTTATTTGA AATTATGTGT AGCAAGTGAT GACGTTGATT TGAGTAAAAT 361 GGCTTTGGGA ATGAAAGAAA AATTCAAGAA ATATTGGGGG ACTCCTGAAA AAATGAACAA 421 AATGATTTTT ATTGCTTCTG TTTTGGATCC TCGCAATAAA TTTGTCTATG TTAGTTTTGC 481 TCTTGAAGAA TTACTTGGGG AAGAAACGGG AAATGTAGTG AATACGAAAG CAGAGGCTTA 541 CTTGAGGGAT TTGTTTGCGA TATATGTAAG TAAGTATGGA AAAGGTTCCA Predicted gene structure (within gDNA segment 59758 to 62701): Exon 1 61484 62071 ( 588 n); cDNA 2 588 ( 587 n); score: 0.889 MATCH C04HBa0031H05.1+ SGN-E550684+ 0.889 588 0.997 C PGS_C04HBa0031H05.1+_SGN-E550684+ (61484 62071) Alignment (genomic DNA sequence = upper lines): GATTGTGATA AAATGTTGTC TTTAGATGTG CTTACTAAGT GAAATTTCAC CTATTTGATG 61543 || ||||||| | |||||||| |||||||||| | ||||| || | |||| ||| |||||||||| GAATGTGATA AGATGTTGTC TTTAGATGTG CCTACTAGGT GGAATTCCAC CTATTTGATG 61 TTGGACATAA CAAAAAAGTT TGAGAAGACT TTTGAGAGGT TTAATCTTTA TAATGGTAAT 61603 || |||| | || ||||||| ||||||| || |||||||||| || ||||||| | |||||||| TTAGACACAG CAGAAAAGTT TGAGAAGGCT TTTGAGAGGT TTGATCTTTA TGATGGTAAT 121 TATAATTCTT TTCTTGCTAC TGATGTTTGT GAAGATGGAA GTATCACAAG TTCAATTCAC 61663 | | |||||| |||||||||| |||||||||| |||||||||| ||||| || | |||||||| TTTCATTCTT TTCTTGCTAC TGATGTTTGT GAAGATGGAA GTATCGCAGG GTCAATTCAA 181 TAATGAAGAT TTGGCT-ACG TGAGGAATGT CACAAAGTTT CTTGAATAAT TTTATAAACT 61722 | |||||||| | |||| | | |||||||||| |||||||||| |||||| ||| ||||| |||| T-ATGAAGAT TGGGCTAATG TGAGGAATGT CACAAAGTTT CTTGAAAAAT TTTATGAACT 240 CACTTTGAAA GTTTCAGGTT CACGGTAAGT TACTTGTAAT TTTCATTTTG AGGATATATA 61782 |||||||||| |||||||||| ||||||| || |||||||||| ||||||||| | ||||||| CACTTTGAAA GTTTCAGGTT CACGGTATGT TACTTGTAAT GTTCATTTTG AAGATATATG 300 TGAACTTGAT GCTTATTTTA AAGTATGTAT GACAAGTGAT GA-TTTTATT TGAGTAAAAT 61841 |||||||||| |||||||| | || ||||| | |||||||| || || ||| |||||||||| TGAACTTGAT GCTTATTTGA AATTATGTGT AGCAAGTGAT GACGTTGATT TGAGTAAAAT 360 GGATTCGGGA ATTAAAGAAA AGTTCAAGAA ATATTGGGGT ACTCCTGAAA AGATAAACAA 61901 || || |||| || ||||||| | |||||||| ||||||||| |||||||||| | || ||||| GGCTTTGGGA ATGAAAGAAA AATTCAAGAA ATATTGGGGG ACTCCTGAAA AAATGAACAA 420 AATATTTTTT ATTGCTTCTG TTTTTGGATT CTCGCAATAA ATTTGTGTAT GTTAGTTTTG 61961 ||| ||||| |||||||||| |||||||| |||||||||| |||||| ||| |||||||||| AATGATTTTT ATTGCTTCTG -TTTTGGATC CTCGCAATAA ATTTGTCTAT GTTAGTTTTG 479 CTCTTGAATA ATTACTTGGG GAAGAAACAG AAAATATAGT GAATAAGAAA GTATGAGACT 62021 |||||||| | |||||||||| |||||||| | |||| |||| ||||| |||| | | ||| || CTCTTGAAGA ATTACTTGGG GAAGAAACGG GAAATGTAGT GAATACGAAA GCA-GAGGCT 538 TACTTAAAGA ATTTGTTTAT GATATATGTA AGTAAGTATG GAAAAGGTTC 62071 ||||| | | |||||||| |||||||||| |||||||||| |||||||||| TACTTGAGGG ATTTGTTTGC GATATATGTA AGTAAGTATG GAAAAGGTTC 588 hqPGS_C04HBa0031H05.1+_SGN-E550684+ (61484 62071) ******************************************************************************** EST sequence 75 -strand 443 n (File: SGN-E372630-) 1 TTTGTGTCCA AGATTGGCTT AGACAAGAAA CCAAGCCTAT TTGTGTTGAA GAAAGTTTGG 61 AGTTTCTTGA AAAAATTGAA CTTGAGATGG CAAATAGTGG AAGAAGCTCT TCCATTGTTG 121 ATTTATGATT GACTTGCAAG CGGTCCAAGG GTCAAGACAA TGAAGAAATA ATTTTGTTGG 181 CACGTGACAC TTGAAAGTTG AAAGCGATTT CATGGAAGAA AGTCAAGAAA CTCATTATTG 241 TTGTTTGTTA TTGTTGAAAG TAATCTCATG AAAGTCAACA TTGTTTGTTG CTTATTATTG 301 TTTATTATGA GTTAATGAGA GACTTTATTG TTACTTGTTA GATTCTTAAT ATGTTGTATT 361 TGTGAAGACA TTAAGTTATT AACAACAAAT CTACAAAGAC TACAATGCAA CTTTTGTTTT 421 AGTGTCATTG GAAAAAAAAA AAA Predicted gene structure (within gDNA segment 61542 to 66260): Exon 1 62440 62523 ( 84 n); cDNA 1 84 ( 84 n); score: 0.917 Intron 1 62524 62610 ( 87 n); Pd: 0.000 (s: 0.96), Pa: 0.969 (s: 0.96) Exon 2 62611 62668 ( 58 n); cDNA 85 142 ( 58 n); score: 0.966 Intron 2 62669 62750 ( 82 n); Pd: 0.957 (s: 0.98), Pa: 0.843 (s: 0) Exon 3 62751 62773 ( 23 n); cDNA 143 165 ( 23 n); score: 0.957 Intron 3 62774 62803 ( 30 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.59) ?? Exon 4 62804 62887 ( 84 n); cDNA 166 253 ( 88 n); score: 0.696 Intron 4 62888 62981 ( 94 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0) Exon 5 62982 63009 ( 28 n); cDNA 254 281 ( 28 n); score: 0.821 Intron 5 63010 64267 (1258 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.60) Exon 6 64268 64316 ( 49 n); cDNA 282 332 ( 51 n); score: 0.612 Intron 6 64317 64615 ( 299 n); Pd: 0.000 (s: 0.60), Pa: 0.000 (s: 0) Exon 7 64616 64629 ( 14 n); cDNA 333 346 ( 14 n); score: 0.786 PPA cDNA 432 443 MATCH C04HBa0031H05.1+ SGN-E372630- 0.847 340 0.767 C PGS_C04HBa0031H05.1+_SGN-E372630- (62440 62523,62611 62668,62751 62773,62804 62887,62982 63009,64268 64316,64616 64629) Alignment (genomic DNA sequence = upper lines): TTTGTTTTCA AGATTGTCTT AGACAAGAAA TTAAGCCTAT TTGTGTTGAA TAAAGTTTGG 62499 ||||| | || |||||| ||| |||||||||| |||||||| |||||||||| ||||||||| TTTGTGTCCA AGATTGGCTT AGACAAGAAA CCAAGCCTAT TTGTGTTGAA GAAAGTTTGG 60 AGTTTCTTGA AAAAATTGAA CTTAAAGACT TTTTTATTTT TTATCTGTTT TTGAAAAAAA 62559 |||||||||| |||||||||| ||| AGTTTCTTGA AAAAATTGAA CTTG...... .......... .......... .......... 84 AAAGTTATTG TGTTGTATCT TGTATGACAT ATTTGTTTTT GTTATTTATA GAGATGACAA 62619 ||||| ||| .......... .......... .......... .......... .......... .AGATGGCAA 93 ATAGTGGAAG AAACTCTTCC ATTGTTGATT TATGATTGAC TTGCAAGCGG TGAGTTCAAT 62679 |||||||||| || ||||||| |||||||||| |||||||||| ||||||||| ATAGTGGAAG AAGCTCTTCC ATTGTTGATT TATGATTGAC TTGCAAGCG. .......... 142 ATGTCATTTA TTTAATGATA TCATTATCAA TCTTAAAATT AGTATTCTAA CAGTTTATTT 62739 .......... .......... .......... .......... .......... .......... 142 TATCTTAAAA GGTCCAAGAG TCAAGACAAT GAAGAAAGAC GTAAATTAGT AAGTTTTGTT 62799 ||||||| | |||||||||| |||| .......... .GTCCAAGGG TCAAGACAAT GAAG...... .......... .......... 165 TGTA---T-- TTTTGTTGGC ACTTGAGACT TGAAAGTTGA AAGTAGTCTC ATGGAACAAA 62854 | |||||||||| || ||| ||| |||||||||| ||| | || |||||| ||| ....AAATAA TTTTGTTGGC ACGTGACACT TGAAAGTTGA AAGCGATTTC ATGGAAGAAA 221 ATCAAAAATA CTTATTATTG TTTTTTGTTT TTGTTGACAT TTGAAATTGA TCTTATGGAA 62914 |||| || | || ||||||| || |||||| ||| GTCAAGAA-A CTCATTATTG TTGTTTGTTA TTG....... .......... .......... 253 GAAGGAAAGA AGTTACATTG TTTGTTGATC ATTATTGTTT GTTATGTTGT CACTAGAAAG 62974 .......... .......... .......... .......... .......... .......... 253 TTGAAACTTG AAAGTGGTCT CATGAAAGAC ATTATGTTGT TGTGTTTTCG AATGATCAAT 63034 ||| ||||| ||| |||||||| | | || .......TTG AAAGTAATCT CATGAAAGTC AACAT..... .......... .......... 281 TGATCATTGT ATCTGTGAAG ACATTAACTA CAACGCACTT TTGTTTTAGT GACAGTGTTA 63094 .......... .......... .......... .......... .......... .......... 281 ATGAAAAATT TGTGTGTTTT AGTGATATTG TGAATTAAAA ATTTGTGGTG TTAATGCCTA 63154 .......... .......... .......... .......... .......... .......... 281 ATTATGACAC TTCGTTTTGA CTTTTGATGG GACCTTCTTT GGTGTTATTT TAATTTACTA 63214 .......... .......... .......... .......... .......... .......... 281 CATAAATGTG ATCTTCTTTG GTATTAACTC CTAAGGTAAT TATGATATCT TCTTTGATGT 63274 .......... .......... .......... .......... .......... .......... 281 CAATCATTTA CTAATAGATA TGGGCATATG ACACTACTGG AAAATCAAAC AAAGAAAATC 63334 .......... .......... .......... .......... .......... .......... 281 AAAGCTGAAA AATGAATGCA CTTCTTTGAT GTAACTACAA TGCACTTCTT TGATGTAACT 63394 .......... .......... .......... .......... .......... .......... 281 ATTTTTATCC CATCAAGCTG AATAATCAAA AAAGAAAAAT TGTGAATTTT TAAAAGTTCA 63454 .......... .......... .......... .......... .......... .......... 281 CTAAAAAGGC CTATTAAAAA ATTGAAATAA CAAAATCGAA CTGAAACCCA AAATGAATTA 63514 .......... .......... .......... .......... .......... .......... 281 CCGAATGCCT ACCCCTACTG GCCACGTCTA GGCTTTATGC TTGAAGAGTA AAAAACTTGA 63574 .......... .......... .......... .......... .......... .......... 281 TATCAGAGCA CAGAGTTTAA AAGTCCTTAG GAGTCTATGA AGCTGTGTCT GTCCTAGTTA 63634 .......... .......... .......... .......... .......... .......... 281 TAGGTGTGAA GCGCGCCACA TCTATAATTA AAATGACGTG ACATTTAGGA AATACTTCAC 63694 .......... .......... .......... .......... .......... .......... 281 TTCTTTCATA TTATTTTCGT GCGTTAGAGT TCATCTCTAT AAGTTTTCTT CTAATTTGTG 63754 .......... .......... .......... .......... .......... .......... 281 CTTGCGCGTG TTTTCAAATA ATCATGCCTT CACAAAGAGC AGTAAGAGGT CGTCCGGCTA 63814 .......... .......... .......... .......... .......... .......... 281 GGAGGAACGT GAGGAACCAG AGTTGCCCAA TGAACCTGAA GTGCAACCGC AAGGATAAGT 63874 .......... .......... .......... .......... .......... .......... 281 TTCTAATGCT GATTTTAGAG AGGCAATAAG AATGTTCAGC CAAGTCGTGA CCAATCTAGT 63934 .......... .......... .......... .......... .......... .......... 281 TGGGCATAAG AGAGGAGCTT GAAAAGAAGA TTTTGACATT TCAAAGATTG GTGAGTTCTT 63994 .......... .......... .......... .......... .......... .......... 281 GAGGATGAAT CATCCAAGTT TCACAGGTTT GATAACTATT AAGGATCTGG AGAATTTTGT 64054 .......... .......... .......... .......... .......... .......... 281 CGAGGAACAG AAGAAGGTTT TTGATGTGAT GCATGTTACT AATGCTGAAC GAGTTGAGCT 64114 .......... .......... .......... .......... .......... .......... 281 AGCTGTATAT CAACTAAAAA ATATGATCAA ACCAGATTAT AGAGCAAGAT TTTCTACGTA 64174 .......... .......... .......... .......... .......... .......... 281 TTGGTCTCAC CATTTTCTAG TAGTAGTAGT TCGCGCGAAG GACTTTTCTA TCGCTTGCCC 64234 .......... .......... .......... .......... .......... .......... 281 TTCCACACCA CAATAATTAG GTTAGGTGGG TGTTGTTATT TTATCGTTAT TCTTAATAAT 64294 |||| | | | |||| | || || || .......... .......... .......... ...TGTTTGT TGCTTATTAT TGTTTATTAT 308 -AGGTCCTG- GAGACTTTTT GGTTCATCAT GCTATTGACC TTGGTTTACA TACAGCTTCG 64352 || | || |||||||| | ||| GAGTTAATGA GAGACTTTAT TGTT...... .......... .......... .......... 332 GCGACCGCTC GACCTACCGC GTTAGCCCCA GTACTATAGG GAAGGCCTAT GCGAAGAAAA 64412 .......... .......... .......... .......... .......... .......... 332 GGCCTGCCCA TAATCAAAGC AAGCCCAAGT CCATGCAAGA AGGCCCTCCA GATCTGTCCA 64472 .......... .......... .......... .......... .......... .......... 332 AATTCAAAGC CCGTCATATT TTGTACCCAA AACAAACGCT AGACTTTGTT CAGTTAGTGG 64532 .......... .......... .......... .......... .......... .......... 332 AAGGAGGGCA GAGATGAGGA TGCACCACAT CCGAGTTGGG CTTGTTTTGA AGAAGCTTTC 64592 .......... .......... .......... .......... .......... .......... 332 TTGGGGCATT TCTTCTTGCC AAGAATTGAA AGATTCT 64629 | ||| ||||||| .......... .......... ...ACTTGTT AGATTCT 346 hqPGS_C04HBa0031H05.1+_SGN-E372630- (62440 62523,62611 62668,62751 62773,62804 62887,62982 63009) ******************************************************************************** EST sequence 20 +strand 444 n (File: SGN-E372631+) 1 TTGTGTCCAA GATTGGCTTA GACAAGAAAC CAAGCCTATT TGTGTTGAAG AAAGTTTGGA 61 GTTTCTTGAA AAAATTGAAC TTGAGATGGC AAATAGTGGA AGAAGCTCTT CCATTGTTGA 121 TCTATGATTG ACTTGCAAGC GGTCCAAGGG TCAAGACAAT GAAGAAATAA TTTTGTTGGC 181 ACGTGACACT TGAAAGTTGA AAGCGATCTC ATGGAAGAAA GTCAAGAAAC TCATTATTGT 241 TGTTTGTTAT TGTTGAAAGT AATCTCATGA AAGTCAACAT TGTTTGTTGC TTATTATTGT 301 TTATTATGAG TTAATGAGAG ACTTTATTGT TACTTGTTAG ATTCTTAATA TGTTGTATTT 361 GTGAAGACAT TAAGTTATTA ACAACAAATC TACAAAGACT ACAATGCAAC TTTTGTTTTA 421 GTGTCATTGT GAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 61562 to 66290): Exon 1 62441 62523 ( 83 n); cDNA 1 83 ( 83 n); score: 0.916 Intron 1 62524 62610 ( 87 n); Pd: 0.000 (s: 0.96), Pa: 0.969 (s: 0.94) Exon 2 62611 62668 ( 58 n); cDNA 84 141 ( 58 n); score: 0.948 Intron 2 62669 62750 ( 82 n); Pd: 0.957 (s: 0.96), Pa: 0.843 (s: 0) Exon 3 62751 62773 ( 23 n); cDNA 142 164 ( 23 n); score: 0.957 Intron 3 62774 62803 ( 30 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.61) ?? Exon 4 62804 62887 ( 84 n); cDNA 165 252 ( 88 n); score: 0.708 Intron 4 62888 62981 ( 94 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0) Exon 5 62982 63009 ( 28 n); cDNA 253 280 ( 28 n); score: 0.821 Intron 5 63010 64267 (1258 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.60) Exon 6 64268 64316 ( 49 n); cDNA 281 331 ( 51 n); score: 0.612 Intron 6 64317 64615 ( 299 n); Pd: 0.000 (s: 0.60), Pa: 0.000 (s: 0) Exon 7 64616 64632 ( 17 n); cDNA 332 348 ( 17 n); score: 0.706 Intron 7 64633 64850 ( 218 n); Pd: 0.683 (s: 0), Pa: 0.786 (s: 0) Exon 8 64851 64867 ( 17 n); cDNA 349 365 ( 17 n); score: 0.647 PPA cDNA 432 444 MATCH C04HBa0031H05.1+ SGN-E372631+ 0.847 359 0.809 C PGS_C04HBa0031H05.1+_SGN-E372631+ (62441 62523,62611 62668,62751 62773,62804 62887,62982 63009,64268 64316,64616 64632,64851 64867) Alignment (genomic DNA sequence = upper lines): TTGTTTTCAA GATTGTCTTA GACAAGAAAT TAAGCCTATT TGTGTTGAAT AAAGTTTGGA 62500 |||| | ||| ||||| |||| ||||||||| ||||||||| ||||||||| |||||||||| TTGTGTCCAA GATTGGCTTA GACAAGAAAC CAAGCCTATT TGTGTTGAAG AAAGTTTGGA 60 GTTTCTTGAA AAAATTGAAC TTAAAGACTT TTTTATTTTT TATCTGTTTT TGAAAAAAAA 62560 |||||||||| |||||||||| || GTTTCTTGAA AAAATTGAAC TTG....... .......... .......... .......... 83 AAGTTATTGT GTTGTATCTT GTATGACATA TTTGTTTTTG TTATTTATAG AGATGACAAA 62620 ||||| |||| .......... .......... .......... .......... .......... AGATGGCAAA 93 TAGTGGAAGA AACTCTTCCA TTGTTGATTT ATGATTGACT TGCAAGCGGT GAGTTCAATA 62680 |||||||||| | |||||||| |||||||| | |||||||||| |||||||| TAGTGGAAGA AGCTCTTCCA TTGTTGATCT ATGATTGACT TGCAAGCG.. .......... 141 TGTCATTTAT TTAATGATAT CATTATCAAT CTTAAAATTA GTATTCTAAC AGTTTATTTT 62740 .......... .......... .......... .......... .......... .......... 141 ATCTTAAAAG GTCCAAGAGT CAAGACAATG AAGAAAGACG TAAATTAGTA AGTTTTGTTT 62800 ||||||| || |||||||||| ||| .......... GTCCAAGGGT CAAGACAATG AAG....... .......... .......... 164 GTA---T--T TTTGTTGGCA CTTGAGACTT GAAAGTTGAA AGTAGTCTCA TGGAACAAAA 62855 | | |||||||||| | ||| |||| |||||||||| || ||||| ||||| ||| ...AAATAAT TTTGTTGGCA CGTGACACTT GAAAGTTGAA AGCGATCTCA TGGAAGAAAG 221 TCAAAAATAC TTATTATTGT TTTTTGTTTT TGTTGACATT TGAAATTGAT CTTATGGAAG 62915 |||| || || | |||||||| | |||||| | || TCAAGAA-AC TCATTATTGT TGTTTGTTAT TG........ .......... .......... 252 AAGGAAAGAA GTTACATTGT TTGTTGATCA TTATTGTTTG TTATGTTGTC ACTAGAAAGT 62975 .......... .......... .......... .......... .......... .......... 252 TGAAACTTGA AAGTGGTCTC ATGAAAGACA TTATGTTGTT GTGTTTTCGA ATGATCAATT 63035 |||| |||| |||| ||||||| || || ......TTGA AAGTAATCTC ATGAAAGTCA ACAT...... .......... .......... 280 GATCATTGTA TCTGTGAAGA CATTAACTAC AACGCACTTT TGTTTTAGTG ACAGTGTTAA 63095 .......... .......... .......... .......... .......... .......... 280 TGAAAAATTT GTGTGTTTTA GTGATATTGT GAATTAAAAA TTTGTGGTGT TAATGCCTAA 63155 .......... .......... .......... .......... .......... .......... 280 TTATGACACT TCGTTTTGAC TTTTGATGGG ACCTTCTTTG GTGTTATTTT AATTTACTAC 63215 .......... .......... .......... .......... .......... .......... 280 ATAAATGTGA TCTTCTTTGG TATTAACTCC TAAGGTAATT ATGATATCTT CTTTGATGTC 63275 .......... .......... .......... .......... .......... .......... 280 AATCATTTAC TAATAGATAT GGGCATATGA CACTACTGGA AAATCAAACA AAGAAAATCA 63335 .......... .......... .......... .......... .......... .......... 280 AAGCTGAAAA ATGAATGCAC TTCTTTGATG TAACTACAAT GCACTTCTTT GATGTAACTA 63395 .......... .......... .......... .......... .......... .......... 280 TTTTTATCCC ATCAAGCTGA ATAATCAAAA AAGAAAAATT GTGAATTTTT AAAAGTTCAC 63455 .......... .......... .......... .......... .......... .......... 280 TAAAAAGGCC TATTAAAAAA TTGAAATAAC AAAATCGAAC TGAAACCCAA AATGAATTAC 63515 .......... .......... .......... .......... .......... .......... 280 CGAATGCCTA CCCCTACTGG CCACGTCTAG GCTTTATGCT TGAAGAGTAA AAAACTTGAT 63575 .......... .......... .......... .......... .......... .......... 280 ATCAGAGCAC AGAGTTTAAA AGTCCTTAGG AGTCTATGAA GCTGTGTCTG TCCTAGTTAT 63635 .......... .......... .......... .......... .......... .......... 280 AGGTGTGAAG CGCGCCACAT CTATAATTAA AATGACGTGA CATTTAGGAA ATACTTCACT 63695 .......... .......... .......... .......... .......... .......... 280 TCTTTCATAT TATTTTCGTG CGTTAGAGTT CATCTCTATA AGTTTTCTTC TAATTTGTGC 63755 .......... .......... .......... .......... .......... .......... 280 TTGCGCGTGT TTTCAAATAA TCATGCCTTC ACAAAGAGCA GTAAGAGGTC GTCCGGCTAG 63815 .......... .......... .......... .......... .......... .......... 280 GAGGAACGTG AGGAACCAGA GTTGCCCAAT GAACCTGAAG TGCAACCGCA AGGATAAGTT 63875 .......... .......... .......... .......... .......... .......... 280 TCTAATGCTG ATTTTAGAGA GGCAATAAGA ATGTTCAGCC AAGTCGTGAC CAATCTAGTT 63935 .......... .......... .......... .......... .......... .......... 280 GGGCATAAGA GAGGAGCTTG AAAAGAAGAT TTTGACATTT CAAAGATTGG TGAGTTCTTG 63995 .......... .......... .......... .......... .......... .......... 280 AGGATGAATC ATCCAAGTTT CACAGGTTTG ATAACTATTA AGGATCTGGA GAATTTTGTC 64055 .......... .......... .......... .......... .......... .......... 280 GAGGAACAGA AGAAGGTTTT TGATGTGATG CATGTTACTA ATGCTGAACG AGTTGAGCTA 64115 .......... .......... .......... .......... .......... .......... 280 GCTGTATATC AACTAAAAAA TATGATCAAA CCAGATTATA GAGCAAGATT TTCTACGTAT 64175 .......... .......... .......... .......... .......... .......... 280 TGGTCTCACC ATTTTCTAGT AGTAGTAGTT CGCGCGAAGG ACTTTTCTAT CGCTTGCCCT 64235 .......... .......... .......... .......... .......... .......... 280 TCCACACCAC AATAATTAGG TTAGGTGGGT GTTGTTATTT TATCGTTATT CTTAATAAT- 64294 |||| || | ||||| || || || .......... .......... .......... ..TGTTTGTT GCTTATTATT GTTTATTATG 308 AGGTCCTG-G AGACTTTTTG GTTCATCATG CTATTGACCT TGGTTTACAT ACAGCTTCGG 64353 || | || | ||||||| | ||| AGTTAATGAG AGACTTTATT GTT....... .......... .......... .......... 331 CGACCGCTCG ACCTACCGCG TTAGCCCCAG TACTATAGGG AAGGCCTATG CGAAGAAAAG 64413 .......... .......... .......... .......... .......... .......... 331 GCCTGCCCAT AATCAAAGCA AGCCCAAGTC CATGCAAGAA GGCCCTCCAG ATCTGTCCAA 64473 .......... .......... .......... .......... .......... .......... 331 ATTCAAAGCC CGTCATATTT TGTACCCAAA ACAAACGCTA GACTTTGTTC AGTTAGTGGA 64533 .......... .......... .......... .......... .......... .......... 331 AGGAGGGCAG AGATGAGGAT GCACCACATC CGAGTTGGGC TTGTTTTGAA GAAGCTTTCT 64593 .......... .......... .......... .......... .......... .......... 331 TGGGGCATTT CTTCTTGCCA AGAATTGAAA GATTCTAAGG TACAAGAGTT TCTTACACTG 64653 | ||| | |||||| | .......... .......... ..ACTTGTTA GATTCTTAA. .......... .......... 348 AAACACGACT TCTTAAGTGT GCATGAGTAT GCGTTAATTT CACCCAACTG TCCCATTATG 64713 .......... .......... .......... .......... .......... .......... 348 CTCCTGAAAT TGTTAAGGAT ATGAGAAGCA TGATGAGCTT GTTTGTCGTT GTCTTCGATT 64773 .......... .......... .......... .......... .......... .......... 348 GTATATTAAG AAAAGAGGGA AGATTTGCAA TGATGATAGG AGATATGGAC ATATCTAGGT 64833 .......... .......... .......... .......... .......... .......... 348 TGATTATTTA TGTGCAGCAG GTTGAATAGG AGAA 64867 | |||| || | ||| .......... .......TAT GTTGTATTTG TGAA 365 hqPGS_C04HBa0031H05.1+_SGN-E372631+ (62441 62523,62611 62668,62751 62773,62804 62887,62982 63009) ******************************************************************************** EST sequence 48 +strand 435 n (File: SGN-E289053+) 1 AGATTGGCTT ACACAAGAAA CCAAGCCTAT TTGTGTTGAA GAAAGTTTGG AGTTTCTTGA 61 AAAAATTGAA CTTGAGATGG CAAATAGTGG AAGAAGCTCT TCCATTGTTG ATCTATGATT 121 GACTTGCAAG CGGTCCAAGG GTCAAGACAA TGAAGAAATA ATTTTGTTGG CACGTGACAC 181 TTGAAAGTTG AAAGCGATCT CATGGAAGAA AGTCAAGAAA CTCATTATTG TTGTTTGTTA 241 TTGTTGAAAG TAATCTCATG AAAGTCAACA TTGTTTGTTG CTTATTATTG TTTATTATGA 301 GTTAATGAGA GACTTTATTG TTACTTGTTA GATTCTTAAT ATGTTGTATT TGTGAAGACA 361 TTAAGTTATT AACAACAAAT CTACAAAGAC TACAATGCAA CTTTTGTTTT AGTGTCATTG 421 CGAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 61652 to 66290): Exon 1 62450 62523 ( 74 n); cDNA 1 74 ( 74 n); score: 0.919 Intron 1 62524 62610 ( 87 n); Pd: 0.000 (s: 0.96), Pa: 0.969 (s: 0.94) Exon 2 62611 62668 ( 58 n); cDNA 75 132 ( 58 n); score: 0.948 Intron 2 62669 62750 ( 82 n); Pd: 0.957 (s: 0.96), Pa: 0.843 (s: 0) Exon 3 62751 62773 ( 23 n); cDNA 133 155 ( 23 n); score: 0.957 Intron 3 62774 62803 ( 30 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.61) ?? Exon 4 62804 62887 ( 84 n); cDNA 156 243 ( 88 n); score: 0.708 Intron 4 62888 62981 ( 94 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0) Exon 5 62982 63009 ( 28 n); cDNA 244 271 ( 28 n); score: 0.821 Intron 5 63010 64267 (1258 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.60) Exon 6 64268 64316 ( 49 n); cDNA 272 322 ( 51 n); score: 0.612 Intron 6 64317 64615 ( 299 n); Pd: 0.000 (s: 0.60), Pa: 0.000 (s: 0) Exon 7 64616 64632 ( 17 n); cDNA 323 339 ( 17 n); score: 0.706 Intron 7 64633 64850 ( 218 n); Pd: 0.683 (s: 0), Pa: 0.786 (s: 0) Exon 8 64851 64867 ( 17 n); cDNA 340 356 ( 17 n); score: 0.647 PPA cDNA 423 435 MATCH C04HBa0031H05.1+ SGN-E289053+ 0.845 350 0.805 C PGS_C04HBa0031H05.1+_SGN-E289053+ (62450 62523,62611 62668,62751 62773,62804 62887,62982 63009,64268 64316,64616 64632,64851 64867) Alignment (genomic DNA sequence = upper lines): AGATTGTCTT AGACAAGAAA TTAAGCCTAT TTGTGTTGAA TAAAGTTTGG AGTTTCTTGA 62509 |||||| ||| | |||||||| |||||||| |||||||||| ||||||||| |||||||||| AGATTGGCTT ACACAAGAAA CCAAGCCTAT TTGTGTTGAA GAAAGTTTGG AGTTTCTTGA 60 AAAAATTGAA CTTAAAGACT TTTTTATTTT TTATCTGTTT TTGAAAAAAA AAAGTTATTG 62569 |||||||||| ||| AAAAATTGAA CTTG...... .......... .......... .......... .......... 74 TGTTGTATCT TGTATGACAT ATTTGTTTTT GTTATTTATA GAGATGACAA ATAGTGGAAG 62629 ||||| ||| |||||||||| .......... .......... .......... .......... .AGATGGCAA ATAGTGGAAG 93 AAACTCTTCC ATTGTTGATT TATGATTGAC TTGCAAGCGG TGAGTTCAAT ATGTCATTTA 62689 || ||||||| ||||||||| |||||||||| ||||||||| AAGCTCTTCC ATTGTTGATC TATGATTGAC TTGCAAGCG. .......... .......... 132 TTTAATGATA TCATTATCAA TCTTAAAATT AGTATTCTAA CAGTTTATTT TATCTTAAAA 62749 .......... .......... .......... .......... .......... .......... 132 GGTCCAAGAG TCAAGACAAT GAAGAAAGAC GTAAATTAGT AAGTTTTGTT TGTA---T-- 62804 ||||||| | |||||||||| |||| | .GTCCAAGGG TCAAGACAAT GAAG...... .......... .......... ....AAATAA 161 TTTTGTTGGC ACTTGAGACT TGAAAGTTGA AAGTAGTCTC ATGGAACAAA ATCAAAAATA 62864 |||||||||| || ||| ||| |||||||||| ||| |||| |||||| ||| |||| || | TTTTGTTGGC ACGTGACACT TGAAAGTTGA AAGCGATCTC ATGGAAGAAA GTCAAGAA-A 220 CTTATTATTG TTTTTTGTTT TTGTTGACAT TTGAAATTGA TCTTATGGAA GAAGGAAAGA 62924 || ||||||| || |||||| ||| CTCATTATTG TTGTTTGTTA TTG....... .......... .......... .......... 243 AGTTACATTG TTTGTTGATC ATTATTGTTT GTTATGTTGT CACTAGAAAG TTGAAACTTG 62984 ||| .......... .......... .......... .......... .......... .......TTG 246 AAAGTGGTCT CATGAAAGAC ATTATGTTGT TGTGTTTTCG AATGATCAAT TGATCATTGT 63044 ||||| ||| |||||||| | | || AAAGTAATCT CATGAAAGTC AACAT..... .......... .......... .......... 271 ATCTGTGAAG ACATTAACTA CAACGCACTT TTGTTTTAGT GACAGTGTTA ATGAAAAATT 63104 .......... .......... .......... .......... .......... .......... 271 TGTGTGTTTT AGTGATATTG TGAATTAAAA ATTTGTGGTG TTAATGCCTA ATTATGACAC 63164 .......... .......... .......... .......... .......... .......... 271 TTCGTTTTGA CTTTTGATGG GACCTTCTTT GGTGTTATTT TAATTTACTA CATAAATGTG 63224 .......... .......... .......... .......... .......... .......... 271 ATCTTCTTTG GTATTAACTC CTAAGGTAAT TATGATATCT TCTTTGATGT CAATCATTTA 63284 .......... .......... .......... .......... .......... .......... 271 CTAATAGATA TGGGCATATG ACACTACTGG AAAATCAAAC AAAGAAAATC AAAGCTGAAA 63344 .......... .......... .......... .......... .......... .......... 271 AATGAATGCA CTTCTTTGAT GTAACTACAA TGCACTTCTT TGATGTAACT ATTTTTATCC 63404 .......... .......... .......... .......... .......... .......... 271 CATCAAGCTG AATAATCAAA AAAGAAAAAT TGTGAATTTT TAAAAGTTCA CTAAAAAGGC 63464 .......... .......... .......... .......... .......... .......... 271 CTATTAAAAA ATTGAAATAA CAAAATCGAA CTGAAACCCA AAATGAATTA CCGAATGCCT 63524 .......... .......... .......... .......... .......... .......... 271 ACCCCTACTG GCCACGTCTA GGCTTTATGC TTGAAGAGTA AAAAACTTGA TATCAGAGCA 63584 .......... .......... .......... .......... .......... .......... 271 CAGAGTTTAA AAGTCCTTAG GAGTCTATGA AGCTGTGTCT GTCCTAGTTA TAGGTGTGAA 63644 .......... .......... .......... .......... .......... .......... 271 GCGCGCCACA TCTATAATTA AAATGACGTG ACATTTAGGA AATACTTCAC TTCTTTCATA 63704 .......... .......... .......... .......... .......... .......... 271 TTATTTTCGT GCGTTAGAGT TCATCTCTAT AAGTTTTCTT CTAATTTGTG CTTGCGCGTG 63764 .......... .......... .......... .......... .......... .......... 271 TTTTCAAATA ATCATGCCTT CACAAAGAGC AGTAAGAGGT CGTCCGGCTA GGAGGAACGT 63824 .......... .......... .......... .......... .......... .......... 271 GAGGAACCAG AGTTGCCCAA TGAACCTGAA GTGCAACCGC AAGGATAAGT TTCTAATGCT 63884 .......... .......... .......... .......... .......... .......... 271 GATTTTAGAG AGGCAATAAG AATGTTCAGC CAAGTCGTGA CCAATCTAGT TGGGCATAAG 63944 .......... .......... .......... .......... .......... .......... 271 AGAGGAGCTT GAAAAGAAGA TTTTGACATT TCAAAGATTG GTGAGTTCTT GAGGATGAAT 64004 .......... .......... .......... .......... .......... .......... 271 CATCCAAGTT TCACAGGTTT GATAACTATT AAGGATCTGG AGAATTTTGT CGAGGAACAG 64064 .......... .......... .......... .......... .......... .......... 271 AAGAAGGTTT TTGATGTGAT GCATGTTACT AATGCTGAAC GAGTTGAGCT AGCTGTATAT 64124 .......... .......... .......... .......... .......... .......... 271 CAACTAAAAA ATATGATCAA ACCAGATTAT AGAGCAAGAT TTTCTACGTA TTGGTCTCAC 64184 .......... .......... .......... .......... .......... .......... 271 CATTTTCTAG TAGTAGTAGT TCGCGCGAAG GACTTTTCTA TCGCTTGCCC TTCCACACCA 64244 .......... .......... .......... .......... .......... .......... 271 CAATAATTAG GTTAGGTGGG TGTTGTTATT TTATCGTTAT TCTTAATAAT -AGGTCCTG- 64302 |||| | | | |||| | || || || || | || .......... .......... ...TGTTTGT TGCTTATTAT TGTTTATTAT GAGTTAATGA 308 GAGACTTTTT GGTTCATCAT GCTATTGACC TTGGTTTACA TACAGCTTCG GCGACCGCTC 64362 |||||||| | ||| GAGACTTTAT TGTT...... .......... .......... .......... .......... 322 GACCTACCGC GTTAGCCCCA GTACTATAGG GAAGGCCTAT GCGAAGAAAA GGCCTGCCCA 64422 .......... .......... .......... .......... .......... .......... 322 TAATCAAAGC AAGCCCAAGT CCATGCAAGA AGGCCCTCCA GATCTGTCCA AATTCAAAGC 64482 .......... .......... .......... .......... .......... .......... 322 CCGTCATATT TTGTACCCAA AACAAACGCT AGACTTTGTT CAGTTAGTGG AAGGAGGGCA 64542 .......... .......... .......... .......... .......... .......... 322 GAGATGAGGA TGCACCACAT CCGAGTTGGG CTTGTTTTGA AGAAGCTTTC TTGGGGCATT 64602 .......... .......... .......... .......... .......... .......... 322 TCTTCTTGCC AAGAATTGAA AGATTCTAAG GTACAAGAGT TTCTTACACT GAAACACGAC 64662 | ||| ||||||| | .......... ...ACTTGTT AGATTCTTAA .......... .......... .......... 339 TTCTTAAGTG TGCATGAGTA TGCGTTAATT TCACCCAACT GTCCCATTAT GCTCCTGAAA 64722 .......... .......... .......... .......... .......... .......... 339 TTGTTAAGGA TATGAGAAGC ATGATGAGCT TGTTTGTCGT TGTCTTCGAT TGTATATTAA 64782 .......... .......... .......... .......... .......... .......... 339 GAAAAGAGGG AAGATTTGCA ATGATGATAG GAGATATGGA CATATCTAGG TTGATTATTT 64842 .......... .......... .......... .......... .......... .......... 339 ATGTGCAGCA GGTTGAATAG GAGAA 64867 | |||| || | ||| ........TA TGTTGTATTT GTGAA 356 hqPGS_C04HBa0031H05.1+_SGN-E289053+ (62450 62523,62611 62668,62751 62773,62804 62887,62982 63009) ******************************************************************************** EST sequence 81 -strand 665 n (File: SGN-E214006-) 1 GCTTGCTGGC AGAACGAAAG ACTTGAAGCG GATAGCTGGA AACTGGCATT TCCACTAGAT 61 ATATCTCAAT GGCTGCAAGG GCTTACCTTG GCGCTCCTAC TGTTAGAACC CCAACTGACA 121 AGGGAACTCA AGTGGAAGAC CTTAACACTT CCACTGCCCG AAAGCCTTAT CATTGGAAGG 181 AAACTGCACG ATTAGCAGTG AATAGGATCA ATCCTCCATA TTCTTCTCTT CGGCATAACT 241 GGTAAGCAGC ATACTACAGC AATAGACCAG TCCACTAACA GCGGTATACA GTAAGTCAGT 301 ATAAGTCAGT ACAGGAAGGG CACGCGAAAT AGACAACTAC TTACTAGGCT AGGGTAGTCG 361 TTTTTTCATC TTCCCTTTAT TTTACTTTAC CCTAGTGGAA ATTCTTTTTT CAAAGTTACT 421 AGGTAATTAG TGAAGAGGTT TATAAAAGTG ACAAGCTTGG TGGAAAGCTC TTATCTTAGG 481 AGGAAAAGCT AAGTATGCCC GAGTAGTCTT GATATTGGTT GGTTTGAGGT TTCGTTAGTT 541 TTATACTAAC AAGCAAGCTT CGGCGACCGC TCGACCTAGC GCGTTAGCCC CAGTACTATA 601 GGGAAGGCCT ATGCGAAGAA AAGGCCTGCC CATCATCAAA GCAAGCCCAA GTCCATGCAA 661 GAAGG Predicted gene structure (within gDNA segment 58186 to 65055): Exon 1 61233 61238 ( 6 n); cDNA 509 514 ( 6 n); score: 1.000 Intron 1 61239 61725 ( 487 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 61726 61746 ( 21 n); cDNA 515 534 ( 20 n); score: 0.667 Intron 2 61747 62732 ( 986 n); Pd: 0.936 (s: 0), Pa: 0.842 (s: 0) Exon 3 62733 62753 ( 21 n); cDNA 535 555 ( 21 n); score: 0.619 Intron 3 62754 64345 (1592 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.98) Exon 4 64346 64455 ( 110 n); cDNA 556 665 ( 110 n); score: 0.982 MATCH C04HBa0031H05.1+ SGN-E214006- 0.982 158 0.238 C PGS_C04HBa0031H05.1+_SGN-E214006- (61233 61238,61726 61746,62733 62753,64346 64455) Alignment (genomic DNA sequence = upper lines): TTGATAATGC CTCTTCAAAT GATGTGGCAG TCTTAGAGTT ATTCAAAAAA TTAGATGTGT 61292 |||||| TTGATA.... .......... .......... .......... .......... .......... 514 GGGAAACTAA TATGATGGAA GGTAAGCATC TCCATGTGGG ATGTATGAAT CATATACTTA 61352 .......... .......... .......... .......... .......... .......... 514 ATCTAATTGT GCATGATGGT TTGAAAGAGA TAAGTCCTTT TATCAAATGG GCGAGACAAA 61412 .......... .......... .......... .......... .......... .......... 514 TGGCGAAGTA TGTTAGATCA TGTTCTTCAA GGACAAGAAA CTTTTTGAAA TGTGTTGAAG 61472 .......... .......... .......... .......... .......... .......... 514 TGCAAAAGAT TGATTGTGAT AAAATGTTGT CTTTAGATGT GCTTACTAAG TGAAATTTCA 61532 .......... .......... .......... .......... .......... .......... 514 CCTATTTGAT GTTGGACATA ACAAAAAAGT TTGAGAAGAC TTTTGAGAGG TTTAATCTTT 61592 .......... .......... .......... .......... .......... .......... 514 ATAATGGTAA TTATAATTCT TTTCTTGCTA CTGATGTTTG TGAAGATGGA AGTATCACAA 61652 .......... .......... .......... .......... .......... .......... 514 GTTCAATTCA CTAATGAAGA TTTGGCTACG TGAGGAATGT CACAAAGTTT CTTGAATAAT 61712 .......... .......... .......... .......... .......... .......... 514 TTTATAAACT CACTTTGAAA GTTTCAGGTT CACGGTAAGT TACTTGTAAT TTTCATTTTG 61772 || | |||| ||||| || .......... ...TTGGTTG GTTTGAGGTT -TCG...... .......... .......... 534 AGGATATATA TGAACTTGAT GCTTATTTTA AAGTATGTAT GACAAGTGAT GATTTTATTT 61832 .......... .......... .......... .......... .......... .......... 534 GAGTAAAATG GATTCGGGAA TTAAAGAAAA GTTCAAGAAA TATTGGGGTA CTCCTGAAAA 61892 .......... .......... .......... .......... .......... .......... 534 GATAAACAAA ATATTTTTTA TTGCTTCTGT TTTTGGATTC TCGCAATAAA TTTGTGTATG 61952 .......... .......... .......... .......... .......... .......... 534 TTAGTTTTGC TCTTGAATAA TTACTTGGGG AAGAAACAGA AAATATAGTG AATAAGAAAG 62012 .......... .......... .......... .......... .......... .......... 534 TATGAGACTT ACTTAAAGAA TTTGTTTATG ATATATGTAA GTAAGTATGG AAAAGGTTCT 62072 .......... .......... .......... .......... .......... .......... 534 AAAAATCAAT CATCTTCATT TGACTCATCT AATTCTTGTA CTTAAGGTCT TTCTCAAAAT 62132 .......... .......... .......... .......... .......... .......... 534 GTGTCTTAAA ATTCTTTAAG AACTAAGTTG TACAAGAAGA AACAAAAGCA AGATTCTGGA 62192 .......... .......... .......... .......... .......... .......... 534 AGTTTAGGTG TTAAATCTAA GTTGGATAGA TATCTTCTTG AAGACCAAGA GCCTGAATAT 62252 .......... .......... .......... .......... .......... .......... 534 GAGGATTTTG ATATTTTGAT TTGGTGGAAA GTTAATTCTC CTAGTTTTTC TATACTTTCA 62312 .......... .......... .......... .......... .......... .......... 534 CAGTTGGCTC GAGATGTATT GGATATTCCT ATGTCGAGTG TGGTATAAGA ATGTGCATTT 62372 .......... .......... .......... .......... .......... .......... 534 AGTACCGGTG ATCGTATTCT TGATCCCTTT AGAAGTTCAT TGACTCCCAA ATGTGTGCAA 62432 .......... .......... .......... .......... .......... .......... 534 TGCCTTATTT GTTTTCAAGA TTGTCTTAGA CAAGAAATTA AGCCTATTTG TGTTGAATAA 62492 .......... .......... .......... .......... .......... .......... 534 AGTTTGGAGT TTCTTGAAAA AATTGAACTT AAAGACTTTT TTATTTTTTA TCTGTTTTTG 62552 .......... .......... .......... .......... .......... .......... 534 AAAAAAAAAA GTTATTGTGT TGTATCTTGT ATGACATATT TGTTTTTGTT ATTTATAGAG 62612 .......... .......... .......... .......... .......... .......... 534 ATGACAAATA GTGGAAGAAA CTCTTCCATT GTTGATTTAT GATTGACTTG CAAGCGGTGA 62672 .......... .......... .......... .......... .......... .......... 534 GTTCAATATG TCATTTATTT AATGATATCA TTATCAATCT TAAAATTAGT ATTCTAACAG 62732 .......... .......... .......... .......... .......... .......... 534 TTTATTTTAT CTTAAAAGGT CCAAGAGTCA AGACAATGAA GAAAGACGTA AATTAGTAAG 62792 || |||||| ||| | | TTAGTTTTAT ACTAACAAGC A......... .......... .......... .......... 555 TTTTGTTTGT ATTTTTGTTG GCACTTGAGA CTTGAAAGTT GAAAGTAGTC TCATGGAACA 62852 .......... .......... .......... .......... .......... .......... 555 AAATCAAAAA TACTTATTAT TGTTTTTTGT TTTTGTTGAC ATTTGAAATT GATCTTATGG 62912 .......... .......... .......... .......... .......... .......... 555 AAGAAGGAAA GAAGTTACAT TGTTTGTTGA TCATTATTGT TTGTTATGTT GTCACTAGAA 62972 .......... .......... .......... .......... .......... .......... 555 AGTTGAAACT TGAAAGTGGT CTCATGAAAG ACATTATGTT GTTGTGTTTT CGAATGATCA 63032 .......... .......... .......... .......... .......... .......... 555 ATTGATCATT GTATCTGTGA AGACATTAAC TACAACGCAC TTTTGTTTTA GTGACAGTGT 63092 .......... .......... .......... .......... .......... .......... 555 TAATGAAAAA TTTGTGTGTT TTAGTGATAT TGTGAATTAA AAATTTGTGG TGTTAATGCC 63152 .......... .......... .......... .......... .......... .......... 555 TAATTATGAC ACTTCGTTTT GACTTTTGAT GGGACCTTCT TTGGTGTTAT TTTAATTTAC 63212 .......... .......... .......... .......... .......... .......... 555 TACATAAATG TGATCTTCTT TGGTATTAAC TCCTAAGGTA ATTATGATAT CTTCTTTGAT 63272 .......... .......... .......... .......... .......... .......... 555 GTCAATCATT TACTAATAGA TATGGGCATA TGACACTACT GGAAAATCAA ACAAAGAAAA 63332 .......... .......... .......... .......... .......... .......... 555 TCAAAGCTGA AAAATGAATG CACTTCTTTG ATGTAACTAC AATGCACTTC TTTGATGTAA 63392 .......... .......... .......... .......... .......... .......... 555 CTATTTTTAT CCCATCAAGC TGAATAATCA AAAAAGAAAA ATTGTGAATT TTTAAAAGTT 63452 .......... .......... .......... .......... .......... .......... 555 CACTAAAAAG GCCTATTAAA AAATTGAAAT AACAAAATCG AACTGAAACC CAAAATGAAT 63512 .......... .......... .......... .......... .......... .......... 555 TACCGAATGC CTACCCCTAC TGGCCACGTC TAGGCTTTAT GCTTGAAGAG TAAAAAACTT 63572 .......... .......... .......... .......... .......... .......... 555 GATATCAGAG CACAGAGTTT AAAAGTCCTT AGGAGTCTAT GAAGCTGTGT CTGTCCTAGT 63632 .......... .......... .......... .......... .......... .......... 555 TATAGGTGTG AAGCGCGCCA CATCTATAAT TAAAATGACG TGACATTTAG GAAATACTTC 63692 .......... .......... .......... .......... .......... .......... 555 ACTTCTTTCA TATTATTTTC GTGCGTTAGA GTTCATCTCT ATAAGTTTTC TTCTAATTTG 63752 .......... .......... .......... .......... .......... .......... 555 TGCTTGCGCG TGTTTTCAAA TAATCATGCC TTCACAAAGA GCAGTAAGAG GTCGTCCGGC 63812 .......... .......... .......... .......... .......... .......... 555 TAGGAGGAAC GTGAGGAACC AGAGTTGCCC AATGAACCTG AAGTGCAACC GCAAGGATAA 63872 .......... .......... .......... .......... .......... .......... 555 GTTTCTAATG CTGATTTTAG AGAGGCAATA AGAATGTTCA GCCAAGTCGT GACCAATCTA 63932 .......... .......... .......... .......... .......... .......... 555 GTTGGGCATA AGAGAGGAGC TTGAAAAGAA GATTTTGACA TTTCAAAGAT TGGTGAGTTC 63992 .......... .......... .......... .......... .......... .......... 555 TTGAGGATGA ATCATCCAAG TTTCACAGGT TTGATAACTA TTAAGGATCT GGAGAATTTT 64052 .......... .......... .......... .......... .......... .......... 555 GTCGAGGAAC AGAAGAAGGT TTTTGATGTG ATGCATGTTA CTAATGCTGA ACGAGTTGAG 64112 .......... .......... .......... .......... .......... .......... 555 CTAGCTGTAT ATCAACTAAA AAATATGATC AAACCAGATT ATAGAGCAAG ATTTTCTACG 64172 .......... .......... .......... .......... .......... .......... 555 TATTGGTCTC ACCATTTTCT AGTAGTAGTA GTTCGCGCGA AGGACTTTTC TATCGCTTGC 64232 .......... .......... .......... .......... .......... .......... 555 CCTTCCACAC CACAATAATT AGGTTAGGTG GGTGTTGTTA TTTTATCGTT ATTCTTAATA 64292 .......... .......... .......... .......... .......... .......... 555 ATAGGTCCTG GAGACTTTTT GGTTCATCAT GCTATTGACC TTGGTTTACA TACAGCTTCG 64352 ||||||| .......... .......... .......... .......... .......... ...AGCTTCG 562 GCGACCGCTC GACCTACCGC GTTAGCCCCA GTACTATAGG GAAGGCCTAT GCGAAGAAAA 64412 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| GCGACCGCTC GACCTAGCGC GTTAGCCCCA GTACTATAGG GAAGGCCTAT GCGAAGAAAA 622 GGCCTGCCCA TAATCAAAGC AAGCCCAAGT CCATGCAAGA AGG 64455 |||||||||| | |||||||| |||||||||| |||||||||| ||| GGCCTGCCCA TCATCAAAGC AAGCCCAAGT CCATGCAAGA AGG 665 hqPGS_C04HBa0031H05.1+_SGN-E214006- (64346 64455) ******************************************************************************** EST sequence 47 +strand 696 n (File: SGN-E376578+) 1 TTTTAGTTTG TTTAAAAAAG AATGACTCCT TTCATTTTGT TTTAACTTTC CAAGTGACAT 61 GTTTAAGACG ACATTTTGGT ACATTTGACA TAACTTTAAT TTAGAACCAC AAAATTAAAA 121 AGTCTTCTTC TTTTCTTAAA CTCCGTTCCA AGTCAAACTA GGTCATTCTT TTTTAAATGA 181 AGGGAGTACT ATTTTGGAAA TTTAGAGTTG GTTTTGTTTT CTCAATGAGA TGGTGAAAGT 241 GTACACCATA GAATTATGAG ATCTTTTTTT CTTGTCCAAC TTGAAATGGT TGCCGAATCA 301 TTATCTTGGT AATATGCTGG GGAAGCTTTT CAGAATTTTC ACCTTAGTGT ATTCTAATAT 361 TTCTAATATA TCTAGTTGTA CGAAAGATCT TGCATCATAT AGTGATGCTT ACCTTTTTTA 421 TAATATTCAC ATAATTATCA AATCTCTGGA TTTGTAACTT GCAGCATGTT GCCTTCACAT 481 GTGTTTATCA TATATACTTA CTTTCTTATC AGAACTTCTA GAGCCTTTTG ATTTCTGCTT 541 TCTTTTGACA AGTAAAAGAA TTTCATTACA TTGGCTACAT TAGCACCAAG TACCTCTTCA 601 AAGTGGATAC AAAATACACC AGCTCCCTAT ACTTCCTGCA AGGAGCTAAA GAGTACAAAT 661 TAATTAGGGA TAATACATAT ATTGGACCCT AAACTT Predicted gene structure (within gDNA segment 81897 to 89167): Exon 1 83214 83365 ( 152 n); cDNA 70 222 ( 153 n); score: 0.783 Intron 1 83366 86348 (2983 n); Pd: 0.000 (s: 0.50), Pa: 0.994 (s: 0) Exon 2 86349 86360 ( 12 n); cDNA 223 234 ( 12 n); score: 0.833 Intron 2 86361 86910 ( 550 n); Pd: 0.000 (s: 0), Pa: 0.995 (s: 0) Exon 3 86911 86932 ( 22 n); cDNA 235 254 ( 20 n); score: 0.682 MATCH C04HBa0031H05.1+ SGN-E376578+ 0.783 186 0.267 C PGS_C04HBa0031H05.1+_SGN-E376578+ (83214 83365,86349 86360,86911 86932) Alignment (genomic DNA sequence = upper lines): GATATTTTGG TACATTTGAC ATAACTTTGA TTAAGAATCA CAAGATTAAA AAGTCTTCTT 83273 || ||||||| |||||||||| |||||||| | || |||| || ||| |||||| |||||||| | GACATTTTGG TACATTTGAC ATAACTTTAA TTTAGAACCA CAAAATTAAA AAGTCTTC-T 128 TCTTTTCTTG AACTTTGTTC CAAGTCAAAC TAGGTCATTC TTTTCAAAAC TGAGAAAGTA 83333 ||||||||| |||| |||| |||||||||| |||||||||| |||| ||| || |||| TCTTTTCTTA AACTCCGTTC CAAGTCAAAC TAGGTCATTC TTTTTTAAAT GAAGGGAGTA 188 -T-TTAATTA TATTTTTAGT TGCTTTATAA TTCTAGAATA GGATTTATGT TTCATAGTTT 83391 | || | |||| ||| || ||| |||| CTATTTTGGA AATTTAGAGT TGGTTTTGTT TTCT...... .......... .......... 222 CACAAGGATT AGGATAAGTT ATAGTTACTA GTTTGGAATA GGAGTTCGGT CTCCTACTTC 83451 .......... .......... .......... .......... .......... .......... 222 CATAAGAATT AGACTCTCTA TGGATGTGAT AAGACTCCTA TTTAAAGGGG CTTTTGATGA 83511 .......... .......... .......... .......... .......... .......... 222 ATAAATTGGT AAGTCATTTT TCAGCAAAAA ATAGGAGATT AGAGTTCTCT TCCATTAAAC 83571 .......... .......... .......... .......... .......... .......... 222 TCAAAGGTCA CAGTCTCCCT TTTAAGAGCT GAAGAGATCG AAGTTCTCTC TTTTAATGAA 83631 .......... .......... .......... .......... .......... .......... 222 CTCTAAGGTT TCAGCCTCTC TTTAACAAGC TAATTCATAG ATCGCCTGTG AAACAATCTT 83691 .......... .......... .......... .......... .......... .......... 222 TCTGTTAAGA TTCATAACAT ACCTATGAAT AGGTATGGAA TCCAAGACAA TATTAATAGA 83751 .......... .......... .......... .......... .......... .......... 222 GTGTTAATCT TTTCCCCAAA GAGAGAGGTA TAGACTCTTC CAGTTCACCA ATCTTTTGTT 83811 .......... .......... .......... .......... .......... .......... 222 ACATTTCTCT ACCACCCCAT TTCAAATATC TATAGACCTG CTCTTAGCTC ACAGAGGTAT 83871 .......... .......... .......... .......... .......... .......... 222 ACCTAGATAG ATAGTTGGTA GCTCCCCATT TCTACCACTA AGAGTCCTAG CCAATGAAGT 83931 .......... .......... .......... .......... .......... .......... 222 TAAAATAAAG ACCTCGTAAC TAGATACAAG AAGCTTTTGT TCCATGTGTA GCCCTAATAT 83991 .......... .......... .......... .......... .......... .......... 222 TGCTTAAAAA GTAAAAAAAT CACCCTGAGA ATCACGAGTT GTTCTCTGTT AGCCTCACAA 84051 .......... .......... .......... .......... .......... .......... 222 AAGATTAGCA TGTCATCAGC ATTGTACTCT ATGGGTAATC TCCAAAGATC CTACCATGTT 84111 .......... .......... .......... .......... .......... .......... 222 TCATACTCTG AATCCCTTTG ACCAACTATT TTCTAGAGTA GTTTTCATTT TTCAACATAT 84171 .......... .......... .......... .......... .......... .......... 222 CATTTAGACC CTACATAGCA ATGATGAAAA GGAAAGGAGA TGAGGGGTCT CCTTGTCTTA 84231 .......... .......... .......... .......... .......... .......... 222 AACCTCGCTG TGAAGAGAAA AAAAATCTGA GAAAAATCTT GTAGGGGAAC CATTGACAAG 84291 .......... .......... .......... .......... .......... .......... 222 GACTGAGAAC TTCATTGAAG TTTGAGCTTA TACAACACCT CATCCATCTT AACCATCTAG 84351 .......... .......... .......... .......... .......... .......... 222 CACCAAAACC TCTTTTAGAG AGGGTCTCCA ACAAAAACAT CCAATTAAAA TGGTCATAAG 84411 .......... .......... .......... .......... .......... .......... 222 CTTTTTGTAT ATCTAACTTG CAGGTGCATT GCTTCCGACT CTAGAGTCCA CAAATGCATT 84471 .......... .......... .......... .......... .......... .......... 222 TGCCATAAGC ATGACTTCCA CTATCTGCTT TCCTTTGATA AAGGTGAACT GTTGAGTGTC 84531 .......... .......... .......... .......... .......... .......... 222 CACCAGTTTG TGCATAAACT TTATGAGCCT CTCAGTTAAC ATTTTGAAGA TGATCTTAGG 84591 .......... .......... .......... .......... .......... .......... 222 CTGATGCTCA CATATTCTTA GGAATCAAAG CCACATAGGA AGAGTTGAAA CTTTTTTCAT 84651 .......... .......... .......... .......... .......... .......... 222 AAAAACACCT TTCATGGAAG TTTTTAACTG CAGTAATCAC CTCCCCCCTA TTACCTCCTC 84711 .......... .......... .......... .......... .......... .......... 222 CACAATTCCC TTGCTTTCTT AGTATATCTG AATCTAACGT ATTATTTAGT CAATTTTGTT 84771 .......... .......... .......... .......... .......... .......... 222 CGTTAAACTT CTAATTGATG GTTACCTATT GTTTAATTGG GTAATCAAAG AAACTTGGGA 84831 .......... .......... .......... .......... .......... .......... 222 GACAACTTTG GATTTAAACC TCAGACTCAA CCCTGTTATC ATTATCTATT AATGTACGAA 84891 .......... .......... .......... .......... .......... .......... 222 TATACTTGCA AACCATAAAC ATTCATAGTA GAGTTAGTTC ATAAAGCATC TTACTTGCCT 84951 .......... .......... .......... .......... .......... .......... 222 ACTTTAACAC TCAACAGAAT ATAGGCTATT GGATAATTAA GATGTATTCA TTTGGAACAA 85011 .......... .......... .......... .......... .......... .......... 222 CTATTTATTT TGCAAATATT TTGAACTCCA AAATAACAAC CAATGCTATT AAAATTAAGG 85071 .......... .......... .......... .......... .......... .......... 222 AGTACATTAA AGATCCAAAT ATTCAATACC TTGTGATCAT ATTTATCTAG TAAGGTACGA 85131 .......... .......... .......... .......... .......... .......... 222 ATATACTTGC AAACCATAAA CATTCATAGT AGAGTTAGTT CTTGAAGCAT CTTACTTACT 85191 .......... .......... .......... .......... .......... .......... 222 TTAACGTCCA CCAAAAAATA TGTTGTTAGA TAGATAAGTT GGATTCATTT GGAATAAGAA 85251 .......... .......... .......... .......... .......... .......... 222 GTTTAGTTTG CAAAAATTGT GAACTCCAAA TCAACAACCA ATGCTATTAA AAGCAAGTAG 85311 .......... .......... .......... .......... .......... .......... 222 GAGTACATTA AAGATCCAAA TAACAGGTGA CTTGACATGG GAAATAATGA GAAGTGAGCA 85371 .......... .......... .......... .......... .......... .......... 222 GGGATAACAT TTTCAAAGAA AAAAAAGCAG GCAATTGAAC ATAGTTTTTA TGGTATTATT 85431 .......... .......... .......... .......... .......... .......... 222 TCTACTCTAT GCTTGGCCTA CAATGGGTAA TGCCCTACAA CATGAAGGAT GCTTATGCCA 85491 .......... .......... .......... .......... .......... .......... 222 GCTGGATACT GTGGAAAGTT GACAAATCCA TCAGAAAGAT CTAGAGAATG ATCCCAGCAG 85551 .......... .......... .......... .......... .......... .......... 222 CCATTTTTTG GAGCATATGG AAAGAGAAAC AACAGATGCT TTAATGGAAT ATCAACCTCT 85611 .......... .......... .......... .......... .......... .......... 222 TTATGCACTC TTAAAGCCCA AAGTCTAGTT AGTTTATTTA GCTGGCACTT TTTGCCAATG 85671 .......... .......... .......... .......... .......... .......... 222 TAAACAGTGT GGATAACCTT TCGGATTTTG TTAGTTCCCT ATCTATAGTA CAGTAGAGTA 85731 .......... .......... .......... .......... .......... .......... 222 GTAGGGTTCC TATTGACTGT TTCACAAGTT TTTGCCAAGC TAGCTCCATA TTTTCTGTTT 85791 .......... .......... .......... .......... .......... .......... 222 GGAGCAGCTT TCTTGCACAC GGTGCTTTTG TAACTTTGCA TCTTCTTGAT GCTTTCCAAT 85851 .......... .......... .......... .......... .......... .......... 222 ATCATTTAAT TACTTTATCA AAAAAAACAT AGTTTTTATT GTAATTTAAT CATTAGGTTT 85911 .......... .......... .......... .......... .......... .......... 222 GCTCTACTAT TTATCTTCTT CTTCTTTTGT TTTGAAACTG GCAAGTTTTT ATTGTGATTT 85971 .......... .......... .......... .......... .......... .......... 222 ACTCCTTAGG TTTGCTCTAC TATTTATTTT TTGTTTTGTT TTGAAACTGG TAACCTAACT 86031 .......... .......... .......... .......... .......... .......... 222 CTATATATCC ACAGTTATAC TACAACCAAA AGTGCAGTTC CCCTATAAAG TATTTCAATC 86091 .......... .......... .......... .......... .......... .......... 222 TATCAAAAGC TCAAAACTAT GTACGTTGCC TACAAACAAT CTAGAACATC AAAGATGTCT 86151 .......... .......... .......... .......... .......... .......... 222 TCTGTTTGAG CTAATAAACT ATTTATTTTC TTTTAGCTTT ATTCAATCAT AACCATTTCA 86211 .......... .......... .......... .......... .......... .......... 222 TTGATTGTTT GGATAAAGAT TAGATTGCCA CAATTTCAGT AATTTAAGAA ATTTCCCAAT 86271 .......... .......... .......... .......... .......... .......... 222 AATTCCTCCT GGCAACAATC ACATTTCAAT ATTTTATTCT AGTAGAGACA TGTATATTTG 86331 .......... .......... .......... .......... .......... .......... 222 CATTGTAAAT CCAACAGCAA TGACAAGGTC AGAAATTTGG ATGAGTGTCA TGCTGCATTG 86391 ||| ||| | ||| .......... .......CAA TGAGATGGT. .......... .......... .......... 234 CAAAAGGTAA CAATAAAACG AGATCATCTC CTAGGCTTTT AAATCCAATT AAACATTTAG 86451 .......... .......... .......... .......... .......... .......... 234 GGAGCAAAGC CACAGAAGGG GGAGAAAAAT ATCACACGTG TAATACAAAA AAAAATACTG 86511 .......... .......... .......... .......... .......... .......... 234 TTTAGTGTTT AGACACAAAT AACTATATGC AAAGAAGACT AGGAACCACA TTCAAGTGAA 86571 .......... .......... .......... .......... .......... .......... 234 ATATATGGTG TAAAAAATAT TATCACCCAA GTGCAACTTT AATTTCAAAA TAATGTGAAA 86631 .......... .......... .......... .......... .......... .......... 234 AATCAATTCT AAAACTTCTA GTTCAGATGC AGACATCATG ACTATTTTTC GTATTTTAAA 86691 .......... .......... .......... .......... .......... .......... 234 ACAAACTTCC TATTAGCAAT TGATACATAT TCATGGTAAC ATTTCCTTGA TACTCTATAT 86751 .......... .......... .......... .......... .......... .......... 234 ACTGCTTTTT CTACTAAATT AATTATTTAA TGTCAGAATC TTGAAGACGG CACTCATGCA 86811 .......... .......... .......... .......... .......... .......... 234 AACCACAGCT CACACCTAAG TGCCCTGTGA CGTCACTCTT GTGCAGCAAC TCCCCTGCCT 86871 .......... .......... .......... .......... .......... .......... 234 ATACTGCATC TTGTTTCATT GTTGTTTTTT TTGATGAAGG AAAATGTCAT TAACAAAGCA 86931 | ||| ||| | | || || | .......... .......... .......... .........G AAAGTGT-A- CACCATAGAA 253 T 86932 | T 254 hqPGS_C04HBa0031H05.1+_SGN-E376578+ (83214 83365) ******************************************************************************** EST sequence 50 +strand 429 n (File: SGN-E393272+) 1 TTTTTAGTTT GTTTAAAAAT GAATGACTCC TTTCATTTTG TTTTAACTTT CCAAGTGACA 61 TGTTTAAGAC GACATTTTGG TACATTTGAC ATAACTTTAA TTTAGAACCA CAAAATTAAA 121 AAGTCTTCTT CTTTTCTTAA ACTCCGTTCC AAGTCAAACT AGGTCATTCT TTTTTAAATG 181 AAGGGAGTAC TATTTTGGAA ATTTAGAGTT GGTTTTGTTT TCTCAATGAG ATGGTGAAAG 241 TGTACACCAT AGAATTATGA GATCTTTTTT TCTTGTCCAA CTTGAAATGG TTGCCGAATC 301 ATTATCTTGG TATTATGCTG GGGAAGCTTT TCAGAATTTT CACCTTAGTG TATTCTAATA 361 TTTCTAATAT ATCTAGTTGT ACGAAAGATC TTGCATCCTA TAGTGATGCT TACCTTTTTT 421 ACAATATTC Predicted gene structure (within gDNA segment 81887 to 87687): Exon 1 83214 83365 ( 152 n); cDNA 71 223 ( 153 n); score: 0.783 Intron 1 83366 86348 (2983 n); Pd: 0.000 (s: 0.50), Pa: 0.994 (s: 0) Exon 2 86349 86360 ( 12 n); cDNA 224 235 ( 12 n); score: 0.833 Intron 2 86361 86910 ( 550 n); Pd: 0.000 (s: 0), Pa: 0.995 (s: 0) Exon 3 86911 86932 ( 22 n); cDNA 236 255 ( 20 n); score: 0.682 MATCH C04HBa0031H05.1+ SGN-E393272+ 0.783 186 0.434 C PGS_C04HBa0031H05.1+_SGN-E393272+ (83214 83365,86349 86360,86911 86932) Alignment (genomic DNA sequence = upper lines): GATATTTTGG TACATTTGAC ATAACTTTGA TTAAGAATCA CAAGATTAAA AAGTCTTCTT 83273 || ||||||| |||||||||| |||||||| | || |||| || ||| |||||| |||||||| | GACATTTTGG TACATTTGAC ATAACTTTAA TTTAGAACCA CAAAATTAAA AAGTCTTC-T 129 TCTTTTCTTG AACTTTGTTC CAAGTCAAAC TAGGTCATTC TTTTCAAAAC TGAGAAAGTA 83333 ||||||||| |||| |||| |||||||||| |||||||||| |||| ||| || |||| TCTTTTCTTA AACTCCGTTC CAAGTCAAAC TAGGTCATTC TTTTTTAAAT GAAGGGAGTA 189 -T-TTAATTA TATTTTTAGT TGCTTTATAA TTCTAGAATA GGATTTATGT TTCATAGTTT 83391 | || | |||| ||| || ||| |||| CTATTTTGGA AATTTAGAGT TGGTTTTGTT TTCT...... .......... .......... 223 CACAAGGATT AGGATAAGTT ATAGTTACTA GTTTGGAATA GGAGTTCGGT CTCCTACTTC 83451 .......... .......... .......... .......... .......... .......... 223 CATAAGAATT AGACTCTCTA TGGATGTGAT AAGACTCCTA TTTAAAGGGG CTTTTGATGA 83511 .......... .......... .......... .......... .......... .......... 223 ATAAATTGGT AAGTCATTTT TCAGCAAAAA ATAGGAGATT AGAGTTCTCT TCCATTAAAC 83571 .......... .......... .......... .......... .......... .......... 223 TCAAAGGTCA CAGTCTCCCT TTTAAGAGCT GAAGAGATCG AAGTTCTCTC TTTTAATGAA 83631 .......... .......... .......... .......... .......... .......... 223 CTCTAAGGTT TCAGCCTCTC TTTAACAAGC TAATTCATAG ATCGCCTGTG AAACAATCTT 83691 .......... .......... .......... .......... .......... .......... 223 TCTGTTAAGA TTCATAACAT ACCTATGAAT AGGTATGGAA TCCAAGACAA TATTAATAGA 83751 .......... .......... .......... .......... .......... .......... 223 GTGTTAATCT TTTCCCCAAA GAGAGAGGTA TAGACTCTTC CAGTTCACCA ATCTTTTGTT 83811 .......... .......... .......... .......... .......... .......... 223 ACATTTCTCT ACCACCCCAT TTCAAATATC TATAGACCTG CTCTTAGCTC ACAGAGGTAT 83871 .......... .......... .......... .......... .......... .......... 223 ACCTAGATAG ATAGTTGGTA GCTCCCCATT TCTACCACTA AGAGTCCTAG CCAATGAAGT 83931 .......... .......... .......... .......... .......... .......... 223 TAAAATAAAG ACCTCGTAAC TAGATACAAG AAGCTTTTGT TCCATGTGTA GCCCTAATAT 83991 .......... .......... .......... .......... .......... .......... 223 TGCTTAAAAA GTAAAAAAAT CACCCTGAGA ATCACGAGTT GTTCTCTGTT AGCCTCACAA 84051 .......... .......... .......... .......... .......... .......... 223 AAGATTAGCA TGTCATCAGC ATTGTACTCT ATGGGTAATC TCCAAAGATC CTACCATGTT 84111 .......... .......... .......... .......... .......... .......... 223 TCATACTCTG AATCCCTTTG ACCAACTATT TTCTAGAGTA GTTTTCATTT TTCAACATAT 84171 .......... .......... .......... .......... .......... .......... 223 CATTTAGACC CTACATAGCA ATGATGAAAA GGAAAGGAGA TGAGGGGTCT CCTTGTCTTA 84231 .......... .......... .......... .......... .......... .......... 223 AACCTCGCTG TGAAGAGAAA AAAAATCTGA GAAAAATCTT GTAGGGGAAC CATTGACAAG 84291 .......... .......... .......... .......... .......... .......... 223 GACTGAGAAC TTCATTGAAG TTTGAGCTTA TACAACACCT CATCCATCTT AACCATCTAG 84351 .......... .......... .......... .......... .......... .......... 223 CACCAAAACC TCTTTTAGAG AGGGTCTCCA ACAAAAACAT CCAATTAAAA TGGTCATAAG 84411 .......... .......... .......... .......... .......... .......... 223 CTTTTTGTAT ATCTAACTTG CAGGTGCATT GCTTCCGACT CTAGAGTCCA CAAATGCATT 84471 .......... .......... .......... .......... .......... .......... 223 TGCCATAAGC ATGACTTCCA CTATCTGCTT TCCTTTGATA AAGGTGAACT GTTGAGTGTC 84531 .......... .......... .......... .......... .......... .......... 223 CACCAGTTTG TGCATAAACT TTATGAGCCT CTCAGTTAAC ATTTTGAAGA TGATCTTAGG 84591 .......... .......... .......... .......... .......... .......... 223 CTGATGCTCA CATATTCTTA GGAATCAAAG CCACATAGGA AGAGTTGAAA CTTTTTTCAT 84651 .......... .......... .......... .......... .......... .......... 223 AAAAACACCT TTCATGGAAG TTTTTAACTG CAGTAATCAC CTCCCCCCTA TTACCTCCTC 84711 .......... .......... .......... .......... .......... .......... 223 CACAATTCCC TTGCTTTCTT AGTATATCTG AATCTAACGT ATTATTTAGT CAATTTTGTT 84771 .......... .......... .......... .......... .......... .......... 223 CGTTAAACTT CTAATTGATG GTTACCTATT GTTTAATTGG GTAATCAAAG AAACTTGGGA 84831 .......... .......... .......... .......... .......... .......... 223 GACAACTTTG GATTTAAACC TCAGACTCAA CCCTGTTATC ATTATCTATT AATGTACGAA 84891 .......... .......... .......... .......... .......... .......... 223 TATACTTGCA AACCATAAAC ATTCATAGTA GAGTTAGTTC ATAAAGCATC TTACTTGCCT 84951 .......... .......... .......... .......... .......... .......... 223 ACTTTAACAC TCAACAGAAT ATAGGCTATT GGATAATTAA GATGTATTCA TTTGGAACAA 85011 .......... .......... .......... .......... .......... .......... 223 CTATTTATTT TGCAAATATT TTGAACTCCA AAATAACAAC CAATGCTATT AAAATTAAGG 85071 .......... .......... .......... .......... .......... .......... 223 AGTACATTAA AGATCCAAAT ATTCAATACC TTGTGATCAT ATTTATCTAG TAAGGTACGA 85131 .......... .......... .......... .......... .......... .......... 223 ATATACTTGC AAACCATAAA CATTCATAGT AGAGTTAGTT CTTGAAGCAT CTTACTTACT 85191 .......... .......... .......... .......... .......... .......... 223 TTAACGTCCA CCAAAAAATA TGTTGTTAGA TAGATAAGTT GGATTCATTT GGAATAAGAA 85251 .......... .......... .......... .......... .......... .......... 223 GTTTAGTTTG CAAAAATTGT GAACTCCAAA TCAACAACCA ATGCTATTAA AAGCAAGTAG 85311 .......... .......... .......... .......... .......... .......... 223 GAGTACATTA AAGATCCAAA TAACAGGTGA CTTGACATGG GAAATAATGA GAAGTGAGCA 85371 .......... .......... .......... .......... .......... .......... 223 GGGATAACAT TTTCAAAGAA AAAAAAGCAG GCAATTGAAC ATAGTTTTTA TGGTATTATT 85431 .......... .......... .......... .......... .......... .......... 223 TCTACTCTAT GCTTGGCCTA CAATGGGTAA TGCCCTACAA CATGAAGGAT GCTTATGCCA 85491 .......... .......... .......... .......... .......... .......... 223 GCTGGATACT GTGGAAAGTT GACAAATCCA TCAGAAAGAT CTAGAGAATG ATCCCAGCAG 85551 .......... .......... .......... .......... .......... .......... 223 CCATTTTTTG GAGCATATGG AAAGAGAAAC AACAGATGCT TTAATGGAAT ATCAACCTCT 85611 .......... .......... .......... .......... .......... .......... 223 TTATGCACTC TTAAAGCCCA AAGTCTAGTT AGTTTATTTA GCTGGCACTT TTTGCCAATG 85671 .......... .......... .......... .......... .......... .......... 223 TAAACAGTGT GGATAACCTT TCGGATTTTG TTAGTTCCCT ATCTATAGTA CAGTAGAGTA 85731 .......... .......... .......... .......... .......... .......... 223 GTAGGGTTCC TATTGACTGT TTCACAAGTT TTTGCCAAGC TAGCTCCATA TTTTCTGTTT 85791 .......... .......... .......... .......... .......... .......... 223 GGAGCAGCTT TCTTGCACAC GGTGCTTTTG TAACTTTGCA TCTTCTTGAT GCTTTCCAAT 85851 .......... .......... .......... .......... .......... .......... 223 ATCATTTAAT TACTTTATCA AAAAAAACAT AGTTTTTATT GTAATTTAAT CATTAGGTTT 85911 .......... .......... .......... .......... .......... .......... 223 GCTCTACTAT TTATCTTCTT CTTCTTTTGT TTTGAAACTG GCAAGTTTTT ATTGTGATTT 85971 .......... .......... .......... .......... .......... .......... 223 ACTCCTTAGG TTTGCTCTAC TATTTATTTT TTGTTTTGTT TTGAAACTGG TAACCTAACT 86031 .......... .......... .......... .......... .......... .......... 223 CTATATATCC ACAGTTATAC TACAACCAAA AGTGCAGTTC CCCTATAAAG TATTTCAATC 86091 .......... .......... .......... .......... .......... .......... 223 TATCAAAAGC TCAAAACTAT GTACGTTGCC TACAAACAAT CTAGAACATC AAAGATGTCT 86151 .......... .......... .......... .......... .......... .......... 223 TCTGTTTGAG CTAATAAACT ATTTATTTTC TTTTAGCTTT ATTCAATCAT AACCATTTCA 86211 .......... .......... .......... .......... .......... .......... 223 TTGATTGTTT GGATAAAGAT TAGATTGCCA CAATTTCAGT AATTTAAGAA ATTTCCCAAT 86271 .......... .......... .......... .......... .......... .......... 223 AATTCCTCCT GGCAACAATC ACATTTCAAT ATTTTATTCT AGTAGAGACA TGTATATTTG 86331 .......... .......... .......... .......... .......... .......... 223 CATTGTAAAT CCAACAGCAA TGACAAGGTC AGAAATTTGG ATGAGTGTCA TGCTGCATTG 86391 ||| ||| | ||| .......... .......CAA TGAGATGGT. .......... .......... .......... 235 CAAAAGGTAA CAATAAAACG AGATCATCTC CTAGGCTTTT AAATCCAATT AAACATTTAG 86451 .......... .......... .......... .......... .......... .......... 235 GGAGCAAAGC CACAGAAGGG GGAGAAAAAT ATCACACGTG TAATACAAAA AAAAATACTG 86511 .......... .......... .......... .......... .......... .......... 235 TTTAGTGTTT AGACACAAAT AACTATATGC AAAGAAGACT AGGAACCACA TTCAAGTGAA 86571 .......... .......... .......... .......... .......... .......... 235 ATATATGGTG TAAAAAATAT TATCACCCAA GTGCAACTTT AATTTCAAAA TAATGTGAAA 86631 .......... .......... .......... .......... .......... .......... 235 AATCAATTCT AAAACTTCTA GTTCAGATGC AGACATCATG ACTATTTTTC GTATTTTAAA 86691 .......... .......... .......... .......... .......... .......... 235 ACAAACTTCC TATTAGCAAT TGATACATAT TCATGGTAAC ATTTCCTTGA TACTCTATAT 86751 .......... .......... .......... .......... .......... .......... 235 ACTGCTTTTT CTACTAAATT AATTATTTAA TGTCAGAATC TTGAAGACGG CACTCATGCA 86811 .......... .......... .......... .......... .......... .......... 235 AACCACAGCT CACACCTAAG TGCCCTGTGA CGTCACTCTT GTGCAGCAAC TCCCCTGCCT 86871 .......... .......... .......... .......... .......... .......... 235 ATACTGCATC TTGTTTCATT GTTGTTTTTT TTGATGAAGG AAAATGTCAT TAACAAAGCA 86931 | ||| ||| | | || || | .......... .......... .......... .........G AAAGTGT-A- CACCATAGAA 254 T 86932 | T 255 hqPGS_C04HBa0031H05.1+_SGN-E393272+ (83214 83365) ******************************************************************************** EST sequence 57 +strand 525 n (File: SGN-E210228+) 1 TTTTAGTTCG TTTAAAAAAG AATGACTCCT TTCATTTTGT TTTAACTTTG CAAGGGACAT 61 GTTTAAGACG ACATTTTGGT ACATTTGACA TAACTTTAAT TTAGAACCAC CCAATTAAAA 121 AGTCTTCTTC TTTTCTTAAA CTCCGTTCCA AGTCAAACTA GGTCATTCTT TTTTAAATGA 181 AGGGAGTACT ATTTTGGAAA TTTAGAGTTG GTTTTGTTTT CTCAATGAGA TGGTGAAAGT 241 GTACACCATA CAATTATGAG ATCTTTTTTT CTTGTCCAAC TTGAAATGGT TGCCGAATCA 301 TTATCTTGGT AATATGCTGG GGAAGCTTTT CAGAATCTTC ACCTTAGTGT ATTCTAATAT 361 TTCTAATATA TCTAGTTGTA CGAAAGATCT TGCATCATAT AGTGATGCTT ACCTTTTTTA 421 TAATATTCAC ATAATTATCA AATCTCTGGA TTTGTAACTT GCAGCATGTT GCCTTCACAT 481 GTGTGTATCA TATATACTTA CTTTCTTATC AGAACTTCTA GAGCC Predicted gene structure (within gDNA segment 81897 to 87457): Exon 1 83214 83330 ( 117 n); cDNA 70 185 ( 116 n); score: 0.846 Intron 1 83331 83415 ( 85 n); Pd: 0.033 (s: 0.80), Pa: 0.000 (s: 0) Exon 2 83416 83428 ( 13 n); cDNA 186 198 ( 13 n); score: 0.846 Intron 2 83429 86787 (3359 n); Pd: 0.000 (s: 0), Pa: 0.996 (s: 0) Exon 3 86788 86797 ( 10 n); cDNA 199 207 ( 9 n); score: 0.700 MATCH C04HBa0031H05.1+ SGN-E210228+ 0.846 140 0.267 C PGS_C04HBa0031H05.1+_SGN-E210228+ (83214 83330,83416 83428,86788 86797) Alignment (genomic DNA sequence = upper lines): GATATTTTGG TACATTTGAC ATAACTTTGA TTAAGAATCA CAAGATTAAA AAGTCTTCTT 83273 || ||||||| |||||||||| |||||||| | || |||| || | |||||| |||||||||| GACATTTTGG TACATTTGAC ATAACTTTAA TTTAGAACCA CCCAATTAAA AAGTCTTCTT 129 TCTTTTCTTG AACTTTGTTC CAAGTCAAAC TAGGTCATTC TTTTCAAAAC TGAGAAAGTA 83333 |||||||| |||| |||| |||||||||| |||||||||| |||| ||| || | -CTTTTCTTA AACTCCGTTC CAAGTCAAAC TAGGTCATTC TTTTTTAAAT GAAGGGA... 185 TTTAATTATA TTTTTAGTTG CTTTATAATT CTAGAATAGG ATTTATGTTT CATAGTTTCA 83393 .......... .......... .......... .......... .......... .......... 185 CAAGGATTAG GATAAGTTAT AGTTACTAGT TTGGAATAGG AGTTCGGTCT CCTACTTCCA 83453 ||||| | ||||| .......... .......... ..GTACTATT TTGGA..... .......... .......... 198 TAAGAATTAG ACTCTCTATG GATGTGATAA GACTCCTATT TAAAGGGGCT TTTGATGAAT 83513 .......... .......... .......... .......... .......... .......... 198 AAATTGGTAA GTCATTTTTC AGCAAAAAAT AGGAGATTAG AGTTCTCTTC CATTAAACTC 83573 .......... .......... .......... .......... .......... .......... 198 AAAGGTCACA GTCTCCCTTT TAAGAGCTGA AGAGATCGAA GTTCTCTCTT TTAATGAACT 83633 .......... .......... .......... .......... .......... .......... 198 CTAAGGTTTC AGCCTCTCTT TAACAAGCTA ATTCATAGAT CGCCTGTGAA ACAATCTTTC 83693 .......... .......... .......... .......... .......... .......... 198 TGTTAAGATT CATAACATAC CTATGAATAG GTATGGAATC CAAGACAATA TTAATAGAGT 83753 .......... .......... .......... .......... .......... .......... 198 GTTAATCTTT TCCCCAAAGA GAGAGGTATA GACTCTTCCA GTTCACCAAT CTTTTGTTAC 83813 .......... .......... .......... .......... .......... .......... 198 ATTTCTCTAC CACCCCATTT CAAATATCTA TAGACCTGCT CTTAGCTCAC AGAGGTATAC 83873 .......... .......... .......... .......... .......... .......... 198 CTAGATAGAT AGTTGGTAGC TCCCCATTTC TACCACTAAG AGTCCTAGCC AATGAAGTTA 83933 .......... .......... .......... .......... .......... .......... 198 AAATAAAGAC CTCGTAACTA GATACAAGAA GCTTTTGTTC CATGTGTAGC CCTAATATTG 83993 .......... .......... .......... .......... .......... .......... 198 CTTAAAAAGT AAAAAAATCA CCCTGAGAAT CACGAGTTGT TCTCTGTTAG CCTCACAAAA 84053 .......... .......... .......... .......... .......... .......... 198 GATTAGCATG TCATCAGCAT TGTACTCTAT GGGTAATCTC CAAAGATCCT ACCATGTTTC 84113 .......... .......... .......... .......... .......... .......... 198 ATACTCTGAA TCCCTTTGAC CAACTATTTT CTAGAGTAGT TTTCATTTTT CAACATATCA 84173 .......... .......... .......... .......... .......... .......... 198 TTTAGACCCT ACATAGCAAT GATGAAAAGG AAAGGAGATG AGGGGTCTCC TTGTCTTAAA 84233 .......... .......... .......... .......... .......... .......... 198 CCTCGCTGTG AAGAGAAAAA AAATCTGAGA AAAATCTTGT AGGGGAACCA TTGACAAGGA 84293 .......... .......... .......... .......... .......... .......... 198 CTGAGAACTT CATTGAAGTT TGAGCTTATA CAACACCTCA TCCATCTTAA CCATCTAGCA 84353 .......... .......... .......... .......... .......... .......... 198 CCAAAACCTC TTTTAGAGAG GGTCTCCAAC AAAAACATCC AATTAAAATG GTCATAAGCT 84413 .......... .......... .......... .......... .......... .......... 198 TTTTGTATAT CTAACTTGCA GGTGCATTGC TTCCGACTCT AGAGTCCACA AATGCATTTG 84473 .......... .......... .......... .......... .......... .......... 198 CCATAAGCAT GACTTCCACT ATCTGCTTTC CTTTGATAAA GGTGAACTGT TGAGTGTCCA 84533 .......... .......... .......... .......... .......... .......... 198 CCAGTTTGTG CATAAACTTT ATGAGCCTCT CAGTTAACAT TTTGAAGATG ATCTTAGGCT 84593 .......... .......... .......... .......... .......... .......... 198 GATGCTCACA TATTCTTAGG AATCAAAGCC ACATAGGAAG AGTTGAAACT TTTTTCATAA 84653 .......... .......... .......... .......... .......... .......... 198 AAACACCTTT CATGGAAGTT TTTAACTGCA GTAATCACCT CCCCCCTATT ACCTCCTCCA 84713 .......... .......... .......... .......... .......... .......... 198 CAATTCCCTT GCTTTCTTAG TATATCTGAA TCTAACGTAT TATTTAGTCA ATTTTGTTCG 84773 .......... .......... .......... .......... .......... .......... 198 TTAAACTTCT AATTGATGGT TACCTATTGT TTAATTGGGT AATCAAAGAA ACTTGGGAGA 84833 .......... .......... .......... .......... .......... .......... 198 CAACTTTGGA TTTAAACCTC AGACTCAACC CTGTTATCAT TATCTATTAA TGTACGAATA 84893 .......... .......... .......... .......... .......... .......... 198 TACTTGCAAA CCATAAACAT TCATAGTAGA GTTAGTTCAT AAAGCATCTT ACTTGCCTAC 84953 .......... .......... .......... .......... .......... .......... 198 TTTAACACTC AACAGAATAT AGGCTATTGG ATAATTAAGA TGTATTCATT TGGAACAACT 85013 .......... .......... .......... .......... .......... .......... 198 ATTTATTTTG CAAATATTTT GAACTCCAAA ATAACAACCA ATGCTATTAA AATTAAGGAG 85073 .......... .......... .......... .......... .......... .......... 198 TACATTAAAG ATCCAAATAT TCAATACCTT GTGATCATAT TTATCTAGTA AGGTACGAAT 85133 .......... .......... .......... .......... .......... .......... 198 ATACTTGCAA ACCATAAACA TTCATAGTAG AGTTAGTTCT TGAAGCATCT TACTTACTTT 85193 .......... .......... .......... .......... .......... .......... 198 AACGTCCACC AAAAAATATG TTGTTAGATA GATAAGTTGG ATTCATTTGG AATAAGAAGT 85253 .......... .......... .......... .......... .......... .......... 198 TTAGTTTGCA AAAATTGTGA ACTCCAAATC AACAACCAAT GCTATTAAAA GCAAGTAGGA 85313 .......... .......... .......... .......... .......... .......... 198 GTACATTAAA GATCCAAATA ACAGGTGACT TGACATGGGA AATAATGAGA AGTGAGCAGG 85373 .......... .......... .......... .......... .......... .......... 198 GATAACATTT TCAAAGAAAA AAAAGCAGGC AATTGAACAT AGTTTTTATG GTATTATTTC 85433 .......... .......... .......... .......... .......... .......... 198 TACTCTATGC TTGGCCTACA ATGGGTAATG CCCTACAACA TGAAGGATGC TTATGCCAGC 85493 .......... .......... .......... .......... .......... .......... 198 TGGATACTGT GGAAAGTTGA CAAATCCATC AGAAAGATCT AGAGAATGAT CCCAGCAGCC 85553 .......... .......... .......... .......... .......... .......... 198 ATTTTTTGGA GCATATGGAA AGAGAAACAA CAGATGCTTT AATGGAATAT CAACCTCTTT 85613 .......... .......... .......... .......... .......... .......... 198 ATGCACTCTT AAAGCCCAAA GTCTAGTTAG TTTATTTAGC TGGCACTTTT TGCCAATGTA 85673 .......... .......... .......... .......... .......... .......... 198 AACAGTGTGG ATAACCTTTC GGATTTTGTT AGTTCCCTAT CTATAGTACA GTAGAGTAGT 85733 .......... .......... .......... .......... .......... .......... 198 AGGGTTCCTA TTGACTGTTT CACAAGTTTT TGCCAAGCTA GCTCCATATT TTCTGTTTGG 85793 .......... .......... .......... .......... .......... .......... 198 AGCAGCTTTC TTGCACACGG TGCTTTTGTA ACTTTGCATC TTCTTGATGC TTTCCAATAT 85853 .......... .......... .......... .......... .......... .......... 198 CATTTAATTA CTTTATCAAA AAAAACATAG TTTTTATTGT AATTTAATCA TTAGGTTTGC 85913 .......... .......... .......... .......... .......... .......... 198 TCTACTATTT ATCTTCTTCT TCTTTTGTTT TGAAACTGGC AAGTTTTTAT TGTGATTTAC 85973 .......... .......... .......... .......... .......... .......... 198 TCCTTAGGTT TGCTCTACTA TTTATTTTTT GTTTTGTTTT GAAACTGGTA ACCTAACTCT 86033 .......... .......... .......... .......... .......... .......... 198 ATATATCCAC AGTTATACTA CAACCAAAAG TGCAGTTCCC CTATAAAGTA TTTCAATCTA 86093 .......... .......... .......... .......... .......... .......... 198 TCAAAAGCTC AAAACTATGT ACGTTGCCTA CAAACAATCT AGAACATCAA AGATGTCTTC 86153 .......... .......... .......... .......... .......... .......... 198 TGTTTGAGCT AATAAACTAT TTATTTTCTT TTAGCTTTAT TCAATCATAA CCATTTCATT 86213 .......... .......... .......... .......... .......... .......... 198 GATTGTTTGG ATAAAGATTA GATTGCCACA ATTTCAGTAA TTTAAGAAAT TTCCCAATAA 86273 .......... .......... .......... .......... .......... .......... 198 TTCCTCCTGG CAACAATCAC ATTTCAATAT TTTATTCTAG TAGAGACATG TATATTTGCA 86333 .......... .......... .......... .......... .......... .......... 198 TTGTAAATCC AACAGCAATG ACAAGGTCAG AAATTTGGAT GAGTGTCATG CTGCATTGCA 86393 .......... .......... .......... .......... .......... .......... 198 AAAGGTAACA ATAAAACGAG ATCATCTCCT AGGCTTTTAA ATCCAATTAA ACATTTAGGG 86453 .......... .......... .......... .......... .......... .......... 198 AGCAAAGCCA CAGAAGGGGG AGAAAAATAT CACACGTGTA ATACAAAAAA AAATACTGTT 86513 .......... .......... .......... .......... .......... .......... 198 TAGTGTTTAG ACACAAATAA CTATATGCAA AGAAGACTAG GAACCACATT CAAGTGAAAT 86573 .......... .......... .......... .......... .......... .......... 198 ATATGGTGTA AAAAATATTA TCACCCAAGT GCAACTTTAA TTTCAAAATA ATGTGAAAAA 86633 .......... .......... .......... .......... .......... .......... 198 TCAATTCTAA AACTTCTAGT TCAGATGCAG ACATCATGAC TATTTTTCGT ATTTTAAAAC 86693 .......... .......... .......... .......... .......... .......... 198 AAACTTCCTA TTAGCAATTG ATACATATTC ATGGTAACAT TTCCTTGATA CTCTATATAC 86753 .......... .......... .......... .......... .......... .......... 198 TGCTTTTTCT ACTAAATTAA TTATTTAATG TCAGAATCTT GAAG 86797 ||| || || .......... .......... .......... ....AAT-TT AGAG 207 hqPGS_C04HBa0031H05.1+_SGN-E210228+ (83214 83330) ******************************************************************************** EST sequence 85 +strand 466 n (File: SGN-E258887+) 1 TGATGAGCAC ATTGATAAGT TCTCTAGCGT CTTCATCCTC TGAAAGGAGA CAGGTTGCTG 61 GACGAGCACT CGGTGAGCTT GTTAGGAAGC TTGGAGAAAG AGTCCTTCCT TTGATTATCC 121 CAATATTGTC ACGGGGTCTA AAAGATCCAA ATCCAAGTAG AAGACAAGGT GTCTGCATCG 181 GTCTAAGTGA AGTAATGGCC AGTGCTGGCA GGAGTCAATT GTTGAGTTAT ATGGATGAGC 241 TTATCCCCAC AATTCGGACA GCACTTTGTG ATAGTATGGG CGAGGTTCGG GAATCAGCAG 301 GCCTGGCATT TAGTACTCTT TACAAGAATG CTGGAATGCA AGCAATTGAT GAGATTGTTC 361 CAACACTTCT TCATGCACTG GAGGATGAGG ATACCTCAGA TACTGCTCTG GATGGCTTAA 421 AACAAATTCT GAGTGTCAGG ACCACAGCTG TGCTGCCACA CATCCT Predicted gene structure (within gDNA segment 90796 to 88121): Exon 1 90196 90144 ( 53 n); cDNA 1 53 ( 53 n); score: 1.000 Intron 1 90143 90062 ( 82 n); Pd: 0.985 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 90061 89948 ( 114 n); cDNA 54 167 ( 114 n); score: 1.000 Intron 2 89947 89288 ( 660 n); Pd: 0.997 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 89287 89181 ( 107 n); cDNA 168 274 ( 107 n); score: 1.000 Intron 3 89180 89093 ( 88 n); Pd: 0.850 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 4 89092 89041 ( 52 n); cDNA 275 326 ( 52 n); score: 1.000 Intron 4 89040 88954 ( 87 n); Pd: 0.999 (s: 1.00), Pa: 0.969 (s: 1.00) Exon 5 88953 88847 ( 107 n); cDNA 327 433 ( 107 n); score: 1.000 Intron 5 88846 88764 ( 83 n); Pd: 0.998 (s: 1.00), Pa: 1.000 (s: 0) Exon 6 88763 88731 ( 33 n); cDNA 434 466 ( 33 n); score: 1.000 MATCH C04HBa0031H05.1- SGN-E258887+ 1.000 466 1.000 C PGS_C04HBa0031H05.1-_SGN-E258887+ (90196 90144,90061 89948,89287 89181,89092 89041,88953 88847,88763 88731) Alignment (genomic DNA sequence = upper lines): TGATGAGCAC ATTGATAAGT TCTCTAGCGT CTTCATCCTC TGAAAGGAGA CAGGTATGCT 90137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TGATGAGCAC ATTGATAAGT TCTCTAGCGT CTTCATCCTC TGAAAGGAGA CAG....... 53 GTTACCCTTG TTTGTGGTAA ACAAAAATGT ATTCAGTAGT TCTGGGATAA GAATTCTGTG 90077 .......... .......... .......... .......... .......... .......... 53 GTCTGAAATT CGCAGGTTGC TGGACGAGCA CTCGGTGAGC TTGTTAGGAA GCTTGGAGAA 90017 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GTTGC TGGACGAGCA CTCGGTGAGC TTGTTAGGAA GCTTGGAGAA 98 AGAGTCCTTC CTTTGATTAT CCCAATATTG TCACGGGGTC TAAAAGATCC AAATCCAAGT 89957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGTCCTTC CTTTGATTAT CCCAATATTG TCACGGGGTC TAAAAGATCC AAATCCAAGT 158 AGAAGACAAG TGAGTACTTT ACTTCTTCTG TATGCTTCTA GGTGTTTTCT GTAATTTCTC 89897 ||||||||| AGAAGACAA. .......... .......... .......... .......... .......... 167 TGCATGTTGT CTGTCTTAGA GTACTTCATG TTAATCTTCG TTCATCTATC CAAATTGGGA 89837 .......... .......... .......... .......... .......... .......... 167 GTTATAGTTT CATTGCGAAC AGAGTTAAGG TATATCTTAG TGAGATAACG TTGTACAGCT 89777 .......... .......... .......... .......... .......... .......... 167 GAAGCGTATT TGGGGGGTGA TGATTTTCAG AACAAATTAT ATGATTGAGC TTCTTTGTTA 89717 .......... .......... .......... .......... .......... .......... 167 GAAATGTACT GGAAGTCTTG TTAATAGAAA AGAGCTAACA ACTTTTGCTT AAGCTCTGTG 89657 .......... .......... .......... .......... .......... .......... 167 TGAGCCCTTT TGTCTATTCT GTAATTCTGC ATCTTAAAAA AATTCACATT TTTTGTATAG 89597 .......... .......... .......... .......... .......... .......... 167 GCAGTTTATA TGCTTAAATT CCCAAATTTG TTGCTCGATT CTTCACTAAC GTTGTAGTGA 89537 .......... .......... .......... .......... .......... .......... 167 TACAATATAG TCATGACTTC ATGGTGGCTG AAGCGTGTAT CCTTCTATCT TGATACTTAT 89477 .......... .......... .......... .......... .......... .......... 167 TTATACTGTT CCAAACAAAA GGGGTCAGAA ATGGCTCTGC AACTACAAAA AGTTCTCATC 89417 .......... .......... .......... .......... .......... .......... 167 CTTTTGCCTT CATTAAACAC AGTCTTACGG CTTACCTTCA CACTTGCAAT CACAATGTAC 89357 .......... .......... .......... .......... .......... .......... 167 CAATAAGACG TAGTTTGTTT CCACTTCTCA TTTTTCTTTT CTGCCTACCT TTAATACTTC 89297 .......... .......... .......... .......... .......... .......... 167 TAATTTCAGG GTGTCTGCAT CGGTCTAAGT GAAGTAATGG CCAGTGCTGG CAGGAGTCAA 89237 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G GTGTCTGCAT CGGTCTAAGT GAAGTAATGG CCAGTGCTGG CAGGAGTCAA 218 TTGTTGAGTT ATATGGATGA GCTTATCCCC ACAATTCGGA CAGCACTTTG TGATAGGTGT 89177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTGTTGAGTT ATATGGATGA GCTTATCCCC ACAATTCGGA CAGCACTTTG TGATAG.... 274 GGTATCTTTT GTTTATATTA CTATGAAAAT AGCACTTTTT TGCATTTCCA TTCCAAAGTA 89117 .......... .......... .......... .......... .......... .......... 274 ATTCTTTGGT TCTTTATTCA ACAGTATGGG CGAGGTTCGG GAATCAGCAG GCCTGGCATT 89057 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....TATGGG CGAGGTTCGG GAATCAGCAG GCCTGGCATT 310 TAGTACTCTT TACAAGGTAA ACCCTCAGAT CTAGCCAATC ATTGATATAT TTTACTGAGA 88997 |||||||||| |||||| TAGTACTCTT TACAAG.... .......... .......... .......... .......... 326 ACTTCTCAAC ACTAATCTTC GCATCTGGTG GCTTATAACA TAGAATGCTG GAATGCAAGC 88937 ||||||| |||||||||| .......... .......... .......... .......... ...AATGCTG GAATGCAAGC 343 AATTGATGAG ATTGTTCCAA CACTTCTTCA TGCACTGGAG GATGAGGATA CCTCAGATAC 88877 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGATGAG ATTGTTCCAA CACTTCTTCA TGCACTGGAG GATGAGGATA CCTCAGATAC 403 TGCTCTGGAT GGCTTAAAAC AAATTCTGAG GTAGGCTACC ATATGTCGAG TTTAGACATG 88817 |||||||||| |||||||||| |||||||||| TGCTCTGGAT GGCTTAAAAC AAATTCTGAG .......... .......... .......... 433 TTTCTCTGTA TGATCTTATC TTTTTGTCCT AAATTTGTTG TCACTTATTT CAGTGTCAGG 88757 ||||||| .......... .......... .......... .......... .......... ...TGTCAGG 440 ACCACAGCTG TGCTGCCACA CATCCT 88731 |||||||||| |||||||||| |||||| ACCACAGCTG TGCTGCCACA CATCCT 466 hqPGS_C04HBa0031H05.1-_SGN-E258887+ (90196 90144,90061 89948,89287 89181,89092 89041,88953 88847,88763 88731) ******************************************************************************** EST sequence 87 +strand 754 n (File: SGN-E544794+) 1 TTTTTTTTTG TTGGTTTTTC TACGTAACTA ACACTTCTGG AGGCATCCAG CATAGCCCTT 61 AACGCTGAGG AGTACAAAGT TACCAGTTTT TAGAAAGGAA AAAAAAACTG AAAAAAGATA 121 CTGAAACACT ACATCCATTT AGTCTTAACC ATTATCTGCT TTAGTTTTAA GGAAATATAT 181 GATTACTTTT TTTTTGTGAA ACTAGTAAGG TTGAATTCTT CAGCATTAAG GGTATGTTGG 241 TTACCTCCAA AAAGGAATAA TTACAGATTT CCTATCGAAT CTATAATCTG GTCTATATCA 301 TCTATACAAA GCTGTTTAAA CCAAAAAAGT AGAGATACTA TACAATTCCA TTTAACTTTG 361 TGGATGGAAT TGGATCTATC TTCAAAACAT CTTCCATTTC TTTTCTTTTC ACTTCACTGG 421 ATCTTTTTTG TCACCATACT TTTTATGTGG TAATTATCCA AGTAACAAAG TTAGTCTAAT 481 GAATGCTACT TACACAACCT TAAACAAATG AATATGGACT GGCAGCATGT ACTTTAATGC 541 ATGGTAGTTA CATATTAACA AGGAAAAGGA TCAAACTTAC CCTCAATTAT TGAAAATAGA 601 AATACTATAC CCTACGTTTG GTTTTGGTAA CATAAATACC CAATCCGTTT AGTTTATTGG 661 CTCAGTTATG ACCTAAAACC TAACAAACTT CCATGCGTGA TTTTAATCCA ATAAAAAAAC 721 TTTCAATGCT GATGTGGCTA CCCATAATTA ATGG Predicted gene structure (within gDNA segment 103735 to 94978): Exon 1 102972 102955 ( 18 n); cDNA 89 106 ( 18 n); score: 0.778 Intron 1 102954 102128 ( 827 n); Pd: 0.000 (s: 0), Pa: 0.287 (s: 0) Exon 2 102127 102114 ( 14 n); cDNA 107 119 ( 13 n); score: 0.786 Intron 2 102113 102037 ( 77 n); Pd: 0.000 (s: 0), Pa: 0.990 (s: 0) Exon 3 102036 102027 ( 10 n); cDNA 120 129 ( 10 n); score: 0.700 Intron 3 102026 101557 ( 470 n); Pd: 0.000 (s: 0), Pa: 0.888 (s: 0) Exon 4 101556 101529 ( 28 n); cDNA 130 157 ( 28 n); score: 0.518 Intron 4 101528 100297 (1232 n); Pd: 0.000 (s: 0), Pa: 1.000 (s: 0) Exon 5 100296 100290 ( 7 n); cDNA 158 164 ( 7 n); score: 0.857 Intron 5 100289 99671 ( 619 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 6 99670 99650 ( 21 n); cDNA 165 183 ( 19 n); score: 0.667 Intron 6 99649 99317 ( 333 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.90) Exon 7 99316 99098 ( 219 n); cDNA 184 403 ( 220 n); score: 0.929 Intron 7 99097 97020 (2078 n); Pd: 0.000 (s: 0.98), Pa: 0.000 (s: 0) Exon 8 97019 96986 ( 34 n); cDNA 404 437 ( 34 n); score: 0.603 Intron 8 96985 96518 ( 468 n); Pd: 0.877 (s: 0), Pa: 0.000 (s: 0.58) Exon 9 96517 96475 ( 43 n); cDNA 438 478 ( 41 n); score: 0.581 Intron 9 96474 96346 ( 129 n); Pd: 0.616 (s: 0.58), Pa: 0.702 (s: 0) Exon 10 96345 96340 ( 6 n); cDNA 479 483 ( 5 n); score: 0.833 Intron 10 96339 96275 ( 65 n); Pd: 0.795 (s: 0), Pa: 0.925 (s: 0) Exon 11 96274 96268 ( 7 n); cDNA 484 490 ( 7 n); score: 0.714 PPA cDNA 12 1 MATCH C04HBa0031H05.1- SGN-E544794+ 0.929 407 0.540 C PGS_C04HBa0031H05.1-_SGN-E544794+ (102972 102955,102127 102114,102036 102027,101556 101529,100296 100290,99670 99650,99316 99098,97019 96986,96517 96475,96345 96340,96274 96268) Alignment (genomic DNA sequence = upper lines): TTAAAAAAGG AAAGAAACAT TCATTCTGAA AGGGATTGAT TAGGGAAGTA AGACAACAAC 102913 || | ||||| ||| ||| TTTAGAAAGG AAAAAAAA.. .......... .......... .......... .......... 106 TTGGAATAGA GGGAGTAAAT AATGATATAT TGTTCAGATT TGCACAATAA CCAGTAAGGG 102853 .......... .......... .......... .......... .......... .......... 106 ATAATGCTTT CATCAAGTGT ATGAATCCCG TTCACATACT TGGTGTCTAT TTTTATTTTT 102793 .......... .......... .......... .......... .......... .......... 106 GCTGTACTCT TGTCTAATAT ATAGGTTGGG CATGATAACT GGTTTCAGGT ATGGTATTGT 102733 .......... .......... .......... .......... .......... .......... 106 TTCAAATTTC AACAGTATAA AATTCAAGAT TTTGCGTTAG AAAAGATTTA AGACTTTCAG 102673 .......... .......... .......... .......... .......... .......... 106 TCTATCTCAA CATTCCACAA TATCATGAGC TCTACACGCT TTCCTGGACC AGGAGGCAAC 102613 .......... .......... .......... .......... .......... .......... 106 TGGAAATACT TACTTTCTCT TCTTTTTTTT GCTGGAAAGG TGTTTCTATT TTCCTTGAGT 102553 .......... .......... .......... .......... .......... .......... 106 TTTAGAGTTT GAATTTGTCA TTTCTTCTTG TGACATAAAA CATCCCTGTA TACCTTTCAA 102493 .......... .......... .......... .......... .......... .......... 106 TTTTTTAACA GCTCCCATAT CATTTTAGTT GGGGTATAAG TGGGATATTA ACATAAGCTA 102433 .......... .......... .......... .......... .......... .......... 106 GGAAAATGAA TTAAAATGAG GAGATACGGG TACACTATGT AATGCTTTCT CACTAGTGTT 102373 .......... .......... .......... .......... .......... .......... 106 GGCGTAACAG AAGTGCAAAA CCCACATGCA TCTAAAGATT TTGGGTTCTG TGCTTCATAG 102313 .......... .......... .......... .......... .......... .......... 106 AATTTGTTCT ACTCAGGAAG CATCTTGGCA ACTAATTTGT AAGGAGGGTG CGTTAAGTGT 102253 .......... .......... .......... .......... .......... .......... 106 GTTATTATTT TGTCCTCTGG TTGGTTAGAA CGTGTAAATG ATCTGGTATG GTTGTTTCTC 102193 .......... .......... .......... .......... .......... .......... 106 CCTTTACCTG CTACCTACTT TGAAGAAAGT GGGAAATTTT TGGATGTATT TGGTTTGCTG 102133 .......... .......... .......... .......... .......... .......... 106 TTTAGACTGA AATAAATAAA TGACGTTTTG ATGATTCTAT GAGTTCCACC AAGAAGATAC 102073 ||||| || ||| | .....ACTGA AA-AAAGAT. .......... .......... .......... .......... 119 AGTCTATTTG TATATTTTCT TTTGCTTATA GTGTAGGATG GAACACGTGA ATGAAGCTGA 102013 || ||||| .......... .......... .......... ......ACTG AAACAC.... .......... 129 AACAGTTTTA GAAACATTAG AATCCCTAAA AAGTTAGACA GGGCACACTT TTTTTTTGGT 101953 .......... .......... .......... .......... .......... .......... 129 CTTGCTACAT TGTACAGTCC CAATAACACA CCCTTAGTGC TGTTCTAATC TATAAATTAA 101893 .......... .......... .......... .......... .......... .......... 129 TTTACCTCTT CAAAAAGAAA TTGGGCAATC GCCTGACTAA CGATTTGATC CTTCCCAGAT 101833 .......... .......... .......... .......... .......... .......... 129 ATACAGTTTA TACAGTTCTG CTTTCCTGTT AGTTGAAAGT GACAAAAAGT GATGGCTTGA 101773 .......... .......... .......... .......... .......... .......... 129 TTTTAGTTAA ATCGTAGGAG CGTAATAACT TAAGTATCTG AACAGTATGG TCTTATGATA 101713 .......... .......... .......... .......... .......... .......... 129 TTTGCTTATT TTATTTACTT AATCGACTGT AAGTCTTGAT TATTTTAAGT TAGGTTGTCC 101653 .......... .......... .......... .......... .......... .......... 129 ATATAGCAGC AATTCTGACA TCCATTTCAA ATTTGTGTAC CAAGTGTTGT TGTAATTCAG 101593 .......... .......... .......... .......... .......... .......... 129 TAGTCCTATT TTATGTTCAA AATGTTATCA TTTCAGTATG AAATATTT-G TGTTTACTAT 101534 || | |||| | | || || || .......... .......... .......... ......TA-C ATCCATTTAG TCTTAACCAT 152 TCAGTGTGTT GCTGAAGCTG CTGAAGACAT CTGGGATCAT TACGGGTATG ACTTAGGAAC 101474 | | TATCT..... .......... .......... .......... .......... .......... 157 AGATTACTCT GGCATTTTCA AAGCTCTTTC CCATGCTAAT TATAATGTGC GAGTGGCTGG 101414 .......... .......... .......... .......... .......... .......... 157 CGCTGAGGCC TTGGCTGCTG CTTTAGATGA AAGTCCAGAT ACGATACAGG TTTAATTAGC 101354 .......... .......... .......... .......... .......... .......... 157 TTATATGGTC TGTTTTCTGG AGAAGTTATT AAAATTTCTT AACTGACAGT GTGAACGTTT 101294 .......... .......... .......... .......... .......... .......... 157 TTTTGGATAA ACAATGCTTT CAGGAATGTC TTTCAACTTT ATTTTCTTTG TACATCCGTG 101234 .......... .......... .......... .......... .......... .......... 157 ATGTTGGTTC CGGTGAAGAT ACCTTCGATT GTGGATGGGT AGGCAGACAA GGAATAGCAT 101174 .......... .......... .......... .......... .......... .......... 157 TGGCTCTACT TTCTGTGGCT GATGTTCTTA GAGCAAAAGA CCTTCCTGTT GTTATGACAT 101114 .......... .......... .......... .......... .......... .......... 157 TCCTGATTTC AAGGGCACTG GTAATAAGTT CTTTCTCTGA ATGAGGTGTT GTTAATCATG 101054 .......... .......... .......... .......... .......... .......... 157 TCAATGTTTT AATATATCAT ACTGAATGAT AAAACCTAAG ATCTGCATTT TTTCTTTTTG 100994 .......... .......... .......... .......... .......... .......... 157 TTCTTTCTTT CTCTCTCTTT CAAAGATTGC TAATGATAAC CAACAGGTGA ACAGATATTC 100934 .......... .......... .......... .......... .......... .......... 157 TTCTTTACTT CTGTACATAC TGATTTTGGC AATGAAGTTT TTCTAAGAGT TTGTCTTATT 100874 .......... .......... .......... .......... .......... .......... 157 ATAGTTATAC GGAACACGTT AACTCTCTTA CAATTGAAAG ATTTTTGCTG AGATACTTCT 100814 .......... .......... .......... .......... .......... .......... 157 TTTCTTCGCT TTTAAGGAGT TCCGTCCTTG TATCAAAAGC TTTAAAGTCC ACATCTTCTG 100754 .......... .......... .......... .......... .......... .......... 157 ATATGTACTA GCTGTTTTAT GAATTGTGGT GCTTCTCTTG GTTTTGTAAC CCATCAAAAC 100694 .......... .......... .......... .......... .......... .......... 157 AGAACTTTCT GGAAATATAT GATAATTCAT AAGAAAAGGT TTTATTCTGT TTGGGTTTGA 100634 .......... .......... .......... .......... .......... .......... 157 GTAGTGGGGG CTTTTGAATT GCAGGCAGAT CCTAATGCAG ATGTTAGAGG AAGAATGATC 100574 .......... .......... .......... .......... .......... .......... 157 AATGCTGGCA TAGTTATTAT TGACAAACAT GGAAGAGATA ACGTCTCATT GCTATTCCCT 100514 .......... .......... .......... .......... .......... .......... 157 ATTTTCGAAA ACTACTTGAA CAAAAAGGTA CGACATATTT GTTTCCAAGA TCGTCTATTT 100454 .......... .......... .......... .......... .......... .......... 157 CCTTTAATCT TAAGAAGTTA CTTTTGGTTG GGGGTGAATG ATTGGTGTTC GAGTTTTTCA 100394 .......... .......... .......... .......... .......... .......... 157 TGTTGATCCT ATTGCCATTT TGTGGCTGCT AAAAGCTAGT TATAGGCTTT GAATATATAT 100334 .......... .......... .......... .......... .......... .......... 157 CATATGTTCA AATACCAACT GTTTGTTGAT TGTGCAGGCT TCAGATGAGG AGAAGTATGA 100274 ||| | || .......... .......... .......... .......GCT TTAG...... .......... 164 TCTGGTCCGT GAAGGTGTGG TTATATTTAC TGGAGCTTTG GCAAAGCATT TGGCCAAGGT 100214 .......... .......... .......... .......... .......... .......... 164 AATTGATCCC CCCTTTTATA AACTTGGTTC ACAGTAAGCA CTTTTAAAGA TTTTGATTCT 100154 .......... .......... .......... .......... .......... .......... 164 AAGACCTTGT CTATTAAACA GGATGACCCT AAGGTTCACA CAGTTGTAGA GAAGTTGCTG 100094 .......... .......... .......... .......... .......... .......... 164 GATGTACTGA ATACTCCGTC TGAAGCTGTT CAGCGAGCTG TCGCTACCTG CCTTTCTCCA 100034 .......... .......... .......... .......... .......... .......... 164 CTTATGCAAG CAAAACAGGT TAATTCAGCA TTTTCTTGAA ATCTTCTTTA TACTATGCAG 99974 .......... .......... .......... .......... .......... .......... 164 CTGTAACAAA CAGGAAACAT TGCCACATGT CATGATTGTA AAATCTTGAA CAATCTGTAG 99914 .......... .......... .......... .......... .......... .......... 164 TTACTATACT CCTCGTTAAC AGTCAAAAGT GTGCTTTTGT TTACTGCCAG GCTACTTAGA 99854 .......... .......... .......... .......... .......... .......... 164 CTCTTCATAA CGTACCTGTG TCAGAAGGAT ATGTTTTGGG TTTGGGTATC TCATCTAGAT 99794 .......... .......... .......... .......... .......... .......... 164 CTCACGGAAT ATGCCTTGAG CTGGCTAAAA TTTGGATGTC TTACCAATTA AAAAAGGAGA 99734 .......... .......... .......... .......... .......... .......... 164 TGTGCATATA CCCAACTCAT ATCCATGTCC ATATCCATAT TCGAGTCACG TATAATAGGT 99674 .......... .......... .......... .......... .......... .......... 164 TAGCTGCATG GAATGATATA TGTTGTATCC TAGTAAGTTG TGCAGTTTTA CATCCCTCCT 99614 | | | ||| ||||| || | ...TTTTAAG GAA--ATATA TGAT...... .......... .......... .......... 183 GTAGAAGGGT TCTTCCTTTT AGTGAAGCAA GTAAAAAGAA CCATTGTGAC AAATTGACAA 99554 .......... .......... .......... .......... .......... .......... 183 TATTCCGGAA CCATCTGTTA TCATTCTATA ATTAGCATGA ATCTTGCAGC GAGGCCTTTC 99494 .......... .......... .......... .......... .......... .......... 183 AGTTCTATGA TGAATAAAAT CCAATATGAT AATCCATGTG GCATTTTTGT TCCCTTTTCC 99434 .......... .......... .......... .......... .......... .......... 183 TTCAGGCTAT CGGAGTTCTG AGGTGGTAAC TGGAGAATTG TTTGGTTAAC TACAGACTCA 99374 .......... .......... .......... .......... .......... .......... 183 TTCTCATGCA TTTACCATGC TAATACCGAT AGTCCCTGGG GATATTTTGG AATAAACTTT 99314 | .......... .......... .......... .......... .......... .......TAC 186 TTTTTTTTTG GGAAACTGGT AAGGTTGAAT TCTTCAGCAT TAAGGGCATG CTGGCTACCT 99254 |||||||||| |||||| || |||||||||| |||||||||| |||||| ||| ||| ||||| TTTTTTTTTG TGAAACTAGT AAGGTTGAAT TCTTCAGCAT TAAGGGTATG TTGGTTACCT 246 CCAAAAAGGA ATAATTACAA ATTTCCTTTC AAATCTATAA TCTGGTCTAT ATCATCTATA 99194 |||||||||| ||||||||| ||||||| || ||||||||| |||||||||| |||||||||| CCAAAAAGGA ATAATTACAG ATTTCCTATC GAATCTATAA TCTGGTCTAT ATCATCTATA 306 CAAAGCTGTT TACACC-AAA AAGTGGAGAT ACTATACAAT TCCATTTTAC TTTGTGGATG 99135 |||||||||| || ||| ||| |||| ||||| |||||||||| ||||||| || |||||||||| CAAAGCTGTT TAAACCAAAA AAGTAGAGAT ACTATACAAT TCCATTTAAC TTTGTGGATG 366 GAATTGGATC TATCTTCAAA ACATCTTCCA TTTCTTTCTT TCTAGACTGA CCACCATACA 99075 |||||||||| |||||||||| |||||||||| ||||||| GAATTGGATC TATCTTCAAA ACATCTTCCA TTTCTTT... .......... .......... 403 CATGATGGTA TTAGCTTACA CCATCTCTTT TGACTCTAAC TGCCTCCCCT CCTTATCCGA 99015 .......... .......... .......... .......... .......... .......... 403 CAGCTCAACA GATCTGATGT ATGTTCTGGC ATTGTTCAGT TCATGCTTGT GATGTTGAGA 98955 .......... .......... .......... .......... .......... .......... 403 AACAAATTCC AAATTTGAGC AGTAAACTTA CAATGCAATC CAGGAAGTTT CCCCTGTGAA 98895 .......... .......... .......... .......... .......... .......... 403 GTTGCACAAA AAAGCACCTA GGACCAGTTG TCTGCCTTTC TTTTGTAGAA CTTCTTCTCT 98835 .......... .......... .......... .......... .......... .......... 403 TAAACATGCT CTCGTTATCG CTAACTAGGT GAAACACTTC ACTTTTGTAG GAATGTCACT 98775 .......... .......... .......... .......... .......... .......... 403 CTTCCAAACA TAGTTCCAAT TATACTTTGG GGCTCCTGTC ATCCCCATTA CTCCTCTTTT 98715 .......... .......... .......... .......... .......... .......... 403 GTAGGCATTG TTGACTGAGA AGACTCCATC CTTGCTATGT TTCCACAGGA TCTTGTCTGT 98655 .......... .......... .......... .......... .......... .......... 403 TGCTGTTGTA GTTATAATCA TTCCAGCTAG TTTTTCCAGT AGCACTGCCA CCCTCTCCAC 98595 .......... .......... .......... .......... .......... .......... 403 CTCCCAGTCA TTAAGTAGTC TTCTTAAAGA TATGTCCTAT CCCTGTTCTG TCCAACAATC 98535 .......... .......... .......... .......... .......... .......... 403 ACTCACTCTA GCATCAGGGT TCTCACAGAT TAGAAACAAA TATGGATAAA GTTCTTGAGA 98475 .......... .......... .......... .......... .......... .......... 403 GAGGTTTGAT CTATCCAACC ATCTTTCTAA AATTTAGTTG AGTTTCCATT ACCCACCTTA 98415 .......... .......... .......... .......... .......... .......... 403 ATATACATAT TTCCTTCCAT TTGTGGCCAT AGGTTCCTGA TTGTCCTCCA TACCATATGG 98355 .......... .......... .......... .......... .......... .......... 403 TTCAGAGGTG ATTTTTGTAC ACCAGGGATT TAGTTCTCCA TATTTTGCGA CAATAACCTC 98295 .......... .......... .......... .......... .......... .......... 403 CTTCCAGAGA GCTGCATCTT CCTCAGTGTA TCTCCATAGC CATTTCATCA AAAAGCTTTC 98235 .......... .......... .......... .......... .......... .......... 403 ATTTTGCAAC CTCGAATATC TGATCCCTAA ACCCCTTTCT TTGCTAAGAA GAACATTCTT 98175 .......... .......... .......... .......... .......... .......... 403 CCAATTGACT AAGTTATAAC CCTTTACCTC ATTGTTTTTC CATGGGAAGT TCCTTCTAAG 98115 .......... .......... .......... .......... .......... .......... 403 TTTGTCCAGT TTTTTCACCA CCTTTGCTGA GATTGGAAAC AAGGACATCA CATAGGTTGG 98055 .......... .......... .......... .......... .......... .......... 403 TAAAGAGTCC GGAACGGAGT TTATGAGGAT CAATTTCCCC CCTAGGGATA GGTGTTGTGC 97995 .......... .......... .......... .......... .......... .......... 403 CTTCCATCTA GCAAGTTTCT TCTCTGTTTT CTCCAGAATA CCATTCCATA TCTACATTGT 97935 .......... .......... .......... .......... .......... .......... 403 TTTGTGTTTG CTACCCAGGG GCATGCCCAA GTATATGGTA GGCAAATGCC CGACTTTGCA 97875 .......... .......... .......... .......... .......... .......... 403 TCCCAATATA TTTGCTAGTT GCTGGATCTA AGGGACCTCA TTTACCGGAA AGAGACTACT 97815 .......... .......... .......... .......... .......... .......... 403 TTTTCTCCAA TTTACTTTCA ACCCTGAAAC TGCTTCAAAC AAAACCAAAA TGACTCTGAT 97755 .......... .......... .......... .......... .......... .......... 403 GTAGATAATT TTTTCTGCTG TAGGCTCACA AAAGATGCTA GTATCATCCG CATAGAGCAG 97695 .......... .......... .......... .......... .......... .......... 403 ATGGCACACT TCTTTTTCTT CCCCACTCTA TCTTCAACCT TAAAGCCTCT AATCCATCTT 97635 .......... .......... .......... .......... .......... .......... 403 TTTTGAGTTG CAATCCTCAA ATTTAACATG TTCGCTTGAA CCCATTCAGT TGCATTTGCT 97575 .......... .......... .......... .......... .......... .......... 403 TCCATATCTT CCTCTTGTGA ACTGATGTCC ATCTGGAGTG GAACTGGTTC TGACTCTGCG 97515 .......... .......... .......... .......... .......... .......... 403 TACATGATTT CCAAAGTGTC TGAAAAATCC GTCTCCTCCT CTCTTTGTTT TTGACTTTTG 97455 .......... .......... .......... .......... .......... .......... 403 ATAGCCTCGT CAATTATCAG AATCTCCCCA TGTTTTTGTT TTTCTAACCG ATCCTTGTAT 97395 .......... .......... .......... .......... .......... .......... 403 GCTTTCTTTC TTCGCCTGCG CCGACCTTCT TCCTTTCCCT TCATGCAAAA CTCAACCTCC 97335 .......... .......... .......... .......... .......... .......... 403 TTATTCTTAT CAAAAATGAC AAAATTACTT ACCTCCAAGT TGTTCTGCAC TTGAATGGCT 97275 .......... .......... .......... .......... .......... .......... 403 TCAGTAGAAG GTTCTGTGAA TGACGTTTTA AACTCTATTG GGCTTGAATG AATATCTTCA 97215 .......... .......... .......... .......... .......... .......... 403 GAGATAGTGG CTGAAGGTTG TGTTGTATTT AGATCAATGG GCTTCTCAGA AGCGAGCCCA 97155 .......... .......... .......... .......... .......... .......... 403 AGTTTGGCCC CTAAGTAATT GAATCCCTTT CCGTTCTTAA ATCTGTACCA CATGTAAATT 97095 .......... .......... .......... .......... .......... .......... 403 CACTGGGACC CGCATGTGGG TCCTGCAAAT AAAAAAACAC TCATGCCCAG GCACATGCCT 97035 .......... .......... .......... .......... .......... .......... 403 ACTGCTGCTA GCTACTCCTT TCCCTTTTCT TGATATATTG ATATC-CAAT GTATTTTCCC 96976 || || || ||| || ||| | || | || | || .......... .....TCTTT TCACTTCACT GGATCT-TTT TTGTCACCAT .......... 437 CTTCTGCACA TCCCCTATTT TTTTGTAAAG TCATTGTCTT CTGGTCAGAA CTGTGAAAAG 96916 .......... .......... .......... .......... .......... .......... 437 ATCTGAACTC CAGTTCCCTC TCTCCTCTTT GGTTCAAAAT CTGCTCCTCT TTCTTTTTCC 96856 .......... .......... .......... .......... .......... .......... 437 AGTAAAGTGC CGGCAGCTCA CACCAAATCG GTAGTGAGTA TACAAAGTCT CCGTCAGCCG 96796 .......... .......... .......... .......... .......... .......... 437 TTTCAATTTC CATAGGGATG GTGTCCCTTG GTCCGCTTAC CCTGATCTGA GTCCATCTTA 96736 .......... .......... .......... .......... .......... .......... 437 GATGATTTTT CAGCTCAGTT TCTTCAGTTT CCAGCCAGTC TCCACATCTA TCCCCGATCT 96676 .......... .......... .......... .......... .......... .......... 437 CACATAGCTT TTAAGTTTGT TCGTTTTTGT TGAGAAAGTT GACGTTTATT GACAAAATAT 96616 .......... .......... .......... .......... .......... .......... 437 ATCTGTACTA ATTACATCAG GGGTTTAAAG TTAGCAAAAC CAAATATATC TATCACCTAT 96556 .......... .......... .......... .......... .......... .......... 437 ACTCCTCCTA AACTATCTAA AAGTGAGTAA TATCCTCCAC TTTTGTGGTG AGTACATAGT 96496 || |||| ||| ||| || | .......... .......... .......... ........AC TTTTTATGTG -GTA-ATTAT 457 TACATAAAAA AAGGTTATAT GGCAATTCAA TTTCATGCTC TGGAAAGTAG TTACATAAAA 96436 | || | ||| | | | CCAAGTAACA AAGTTAGTCT A......... .......... .......... .......... 478 AATAAAAGGT TATATGGTAA TTCATTTCAT GCTCTGGAAA GGGATGCTCT TGTTTTCAAA 96376 .......... .......... .......... .......... .......... .......... 478 ACATCTCTTT TCTTCCATAT TGTCCATCAG ATGCAAGCAG GGACAATCTT CCATCTCTCC 96316 ||| || .......... .......... .......... ATG-AA.... .......... .......... 483 TTATGGTCCA ACATGTTTCC TTCTCTATTC CATCCTGTCA GGGCTTCT 96268 ||| || .......... .......... .......... .......... .TGCTACT 490 hqPGS_C04HBa0031H05.1-_SGN-E544794+ (99316 99098) ******************************************************************************** EST sequence 84 +strand 723 n (File: SGN-E332440+) 1 GCAAACACTG ATATTTACAT GTTTGGGAAG CTCCACGGAG GACTTTAAGT GTTAGCTTAT 61 TGAAAAGAAA AATTAAGAAA CAAAAGAAAA AGAAAATACC TCGAATGTGA AATTTGGAGT 121 AACTTTTGTA TCGTAGAAGC TATTTTTTTA AGAAAGAGTA TACTGTTTAG TACATGATGT 181 GGTGTTGGAA TAATTCAAGT GCACTTGAAT TGAGTTGGGC AAAAGCTAGA GTTGTGTCCT 241 TTAGGGTGGC CCAGTGGTTT GGGTATGGGA CTTCCATGTT GGAGGTTTCA AGTTTGAAAC 301 CCCTTGCCAG CGAAAGCAAG GGGTTTGCCT TCTGGGTCGA GCTCATCGCA TCAGGCTTGC 361 CTAGTGTGGG GTACCTCTCT TGTGTTGTTT GCGAGCAATT GCATAGGAGC GGGGTTTTTT 421 TCTGTGTGCA CCCAAAGGGT AGCAGCTGCT GGTTTCCCTT GTCATTAAAA GAAAAAAGAG 481 CTACCAGAGC TGTAACGGTC TTTTTAAGAT GAGAAATCAA TAATAATCCT TGTAAAAAGT 541 TTTCAGCAAA TATTGGACTT ATTAACTGAA TTGTTTTCTT TAAGTGCTTA CTGAAGCTCT 601 AGGACAATAT CATTAATTTC AGGTCAATGC TGCTGGGGAT CTCTGTGCTA TTTGCCAGGA 661 GAAAATGCAT ACACCAATCT TACTACGTTG TAAACATATA TTCTGTGAAG ACTGTGTGTC 721 TGA Predicted gene structure (within gDNA segment 114025 to 106342): Exon 1 112865 112857 ( 9 n); cDNA 181 189 ( 9 n); score: 0.889 Intron 1 112856 112596 ( 261 n); Pd: 0.000 (s: 0), Pa: 0.872 (s: 0) Exon 2 112595 112576 ( 20 n); cDNA 190 209 ( 20 n); score: 0.600 Intron 2 112575 111043 (1533 n); Pd: 0.951 (s: 0), Pa: 0.000 (s: 0.68) Exon 3 111042 110792 ( 251 n); cDNA 210 455 ( 246 n); score: 0.785 Intron 3 110791 110606 ( 186 n); Pd: 0.000 (s: 0.66), Pa: 0.740 (s: 0) Exon 4 110605 110589 ( 17 n); cDNA 456 472 ( 17 n); score: 0.647 MATCH C04HBa0031H05.1- SGN-E332440+ 0.785 297 0.411 C PGS_C04HBa0031H05.1-_SGN-E332440+ (112865 112857,112595 112576,111042 110792,110605 110589) Alignment (genomic DNA sequence = upper lines): GGTATTGGAG ACTTTTGCAG TCAAGACGTT AATGCAGGTT AATTGGCAAG GTTTATTTAA 112806 ||| ||||| GGTGTTGGA. .......... .......... .......... .......... .......... 189 TTATGTGTCA TCATCCTTTA ATGAGTTTGT CGTTATTTCT AACCGGTTCT TAATCTTTCA 112746 .......... .......... .......... .......... .......... .......... 189 CAGTTTATGC TCTTTTTACT ATGCCATCCA AATTGGGATA TCCGAAGAGC AGCTTATAAT 112686 .......... .......... .......... .......... .......... .......... 189 TCTACGAGGA GGATAGTTTC TGCTACCTCA CAGTTATCTG AAACTTTAAT GGTTGAATTT 112626 .......... .......... .......... .......... .......... .......... 189 TCGAGTTATC TCTCTGTTGT TGGTGAAAAG GTTATTCAAA TAAAGATGAG GTGAACTTTC 112566 | |||||| | | ||| .......... .......... .......... ATAATTCAAG TGCACTTGAA .......... 209 TACACATGCT TATGCCTTTA ATATTCCCCA CACTGAACCT TTAGACAAAG GGATTTAAAA 112506 .......... .......... .......... .......... .......... .......... 209 GAAAATTATG TTTGAAGAAG CCACTGTCTA CCATCTCAAA AAAAGAAAAA AGAACCCATT 112446 .......... .......... .......... .......... .......... .......... 209 TTGTCTTGGA GTGGACCTTG TTTGCACTGC AGCCATGAAA AAAGACACAA CTTATCGAGA 112386 .......... .......... .......... .......... .......... .......... 209 TTAGGTGTTC TATTATGGAT TTTATAACCT GATTTTGTCC AGGATGTATA TATCTTAGCT 112326 .......... .......... .......... .......... .......... .......... 209 AGGAACAGGA TCAAATTTTA AGTGACATAT CTAAGTCCTG CTGCAGTACT CGAATGTGCC 112266 .......... .......... .......... .......... .......... .......... 209 TTGGGGGGGG GGGGGAGGGG GGAGTTTTAG AGGCAGTGTT GTGAAAAGCG CGCTTCAAGG 112206 .......... .......... .......... .......... .......... .......... 209 CGAGGCGCTA CTGGTGCGCT TCTTTCTCCT GAGGCGATGC GATCTGAAAA AGGCGCTTGC 112146 .......... .......... .......... .......... .......... .......... 209 TTCAGATAAA AAAGCGAGAA GCGACACTAT GGAAAAAGCG CTATAAAGTG CGCTTTTTTA 112086 .......... .......... .......... .......... .......... .......... 209 TAAAAAAGCG TCAATTAGGT TTTTTTTTTA AAAAAAATCT GAAATAGATA CAACTAAATT 112026 .......... .......... .......... .......... .......... .......... 209 TTCTTTCACG ACTTTACGAC TTTACTCTTC TTTCGCTGCT TCTCTTCTTC ACGACCGCGA 111966 .......... .......... .......... .......... .......... .......... 209 CTGCATCTCT CTTAACCAGC TTCATCTGAT CGGTGAGTTT CTTTTCTCTT CGACCTGCTT 111906 .......... .......... .......... .......... .......... .......... 209 CTCCTCTTGT TGCTCTCTTT GTTTTTCCTT TTCTCCTCTT TGGGTAATGC AAACAAGACT 111846 .......... .......... .......... .......... .......... .......... 209 CTTCTCTTCT CTGATGTAGT TTTTTCTTCT TCTCTGCTGC GATCTGCTAC TGTTTCTTTT 111786 .......... .......... .......... .......... .......... .......... 209 CACAATTACT GACCTGTTTT TTTGGTTAAT ATTACTGCCT CCTCTGTTTT TTTCAATTCT 111726 .......... .......... .......... .......... .......... .......... 209 TTTGCTGTTT TTTTCGTTTT TATTTCTGTA CACTGACTGT GATCAGTGTG TATGCTTGCT 111666 .......... .......... .......... .......... .......... .......... 209 GCTCTGTTTT TTATTTTTTT GACACTTCTT TTTTGCTTGT AGAGTTTGAG GATCTTGTTG 111606 .......... .......... .......... .......... .......... .......... 209 AAGAATATGA GTTTGAGTCT TTGTGATTTA ATTATGTTTT TGATTTTTTG CTTTGTATGT 111546 .......... .......... .......... .......... .......... .......... 209 TATGACTTAT GAGTATTATT GACTATCGAT TTTCATTTAA TCTGAGAATA TATTACATCT 111486 .......... .......... .......... .......... .......... .......... 209 ATTCAGTTAT TTAATATTTT TTTATTTTTA TACTAAATGT CGCTTTTTTA AAAAAAGCGC 111426 .......... .......... .......... .......... .......... .......... 209 GCGTTTCGCT TCTGTGAAGC GAGCCCTCGT CGCTTTTTTC TGCTTCTCGC TTCCCGAAAC 111366 .......... .......... .......... .......... .......... .......... 209 ACTGGTTTTA GGTGAAATGG GTGGTCCTTC TGGTGTGGAA GGAAAGGAAT GGAATGTATT 111306 .......... .......... .......... .......... .......... .......... 209 TCAAAGATAG GCCCAGTTTT GTTCCGAAAG TGAAGCGGAA TTATATTGTC TCTTTATTTT 111246 .......... .......... .......... .......... .......... .......... 209 TGGTGTAATG AACAATGTAT AGAAGAAGTA GATGAACTAG TAGAATTTTT AGGAGCACAG 111186 .......... .......... .......... .......... .......... .......... 209 TAACTAGTCT TTCTCTTGTT TCCTATTTAT CTCTCTTTTG GAGGTCTCCA ACATATCTTT 111126 .......... .......... .......... .......... .......... .......... 209 AATGGGGAGG AATACAATAA TTGCAATTTC TCAAAGAAAA AAAAGTATGG ATGGATATAT 111066 .......... .......... .......... .......... .......... .......... 209 TAGTGCATAG GGTTCTGAAA TTATAAAGTT CTTGGTATAA GAAAGCTAGT TTCACCCTTC 111006 | || | | || | || | || ||| | |||| .......... .......... ...TTGAG-T -TGGGCAAAA GCTAG--AGT TGTGTCCTTT 242 AGGGTGGCCC AGTGGTTTGG GCTTGGGACT TCCATGTTGG AGGTCTCAAG TTCGAAACCC 110946 |||||||||| |||||||||| | ||||||| |||||||||| |||| ||||| || ||||||| AGGGTGGCCC AGTGGTTTGG GTATGGGACT TCCATGTTGG AGGTTTCAAG TTTGAAACCC 302 CGTGCCAGCG AAAGCAAGGG GTTTTACTTT TGGGTCGAGC TCGTTGCACC GAGTTTGCCT 110886 | |||||||| |||||||||| |||| ||| |||||||||| || | ||| | | |||||| CTTGCCAGCG AAAGCAAGGG GTTTGCCTTC TGGGTCGAGC TCATCGCATC AGGCTTGCCT 362 AGTGCAGGTT ACCTCTCCTA TGTGGTTTGC GAGCTATTGC ATAGGAAAGG GTTTTTTACC 110826 |||| || | ||||||| | ||| |||||| |||| ||||| |||||| || | ||||| AGTGTGGGGT ACCTCTCTTG TGTTGTTTGC GAGCAATTGC ATAGGAGCGG GGTTTTT-TT 421 CTGTGCGTAC CCAATGAGTA GCGGCTTTCC CTTGGCATAA AAAAATGAAA GCTAGTTTTG 110766 ||||| | || |||| | ||| || ||| || CTGTGTGCAC CCAAAGGGTA GCAGCTGCTG GTTT...... .......... .......... 455 GATTCAAGGT CCACTAATTC TGAACTTTTA TAAAATTTTA ACTCTCTGCT CTTTATTAAT 110706 .......... .......... .......... .......... .......... .......... 455 TTTTTAATAA CCAAGAAATC TCTGATGGCC AGTTGGACAC TGTTCGAAAC TAGAAGTATG 110646 .......... .......... .......... .......... .......... .......... 455 ATGTGCCTGC ATTGATACCT TTTTCCTTTT AAATATCAAG CTTTTGTCTG TGACAGA 110589 | ||||| | | ||| .......... .......... .......... .......... CCCTTGTCAT TAAAAGA 472 hqPGS_C04HBa0031H05.1-_SGN-E332440+ (111042 110792) ******************************************************************************** EST sequence 56 -strand 661 n (File: SGN-E322543-) 1 AAGAAAAAGT ATACTGGATC CACCAAAGAT GAAGGAGATA GTNGTATCAG TTATAACATG 61 CATGATCTAG AGTAACGATG TGAAAGTGAG ACATTCAAAT CACTTTACCA GATACTAACA 121 TAACGCTAAC AGGTAAAGTT AAATTGAGGA GTAGTCCATT AATGTCGTTA ACCTTGCAAG 181 CAGCTGTCAC GCGTATTCTA TTTTGCCTCT TCATACTCGG TCACCCTTTT CAGAACTAAC 241 TCTTACCGGT TTTTAACTGC ACATTACTTA CTTGTCCAGC ATCAACTTGT GAAGTTACGG 301 ATGGAGGTGG TTCAGAACAT GCCCTCAAGA CAGCTTCATT TATATAAAGC TAAGAGAATG 361 TTACCCTTCG GGGTGGCCCA GTGGTTTGAG CTTGGGACTT CCATGTAGGA GGTCTCAAGT 421 TCGAAACCCC TTGCCAGTGA AAGCAAGGGG TTTGCCTTTT GATCGAGCTC GTCGCACCAA 481 GCTTGCCTAG TGCGGGTTAC CTCTCCTATG TGGTTTGCGA GCTATTGCAT AGGAGCAGGG 541 ATTTTACTCT GTGCGCATCC AAAGGGTAGC GGCTGCGGGT TTCCCTTGTC GTCAAAAAAG 601 GAAAAAAAAA AGCTAAGAGA ATGTTCTCAT TTTACAGTTC AGAGGTTAGA TTTGAAGGAG 661 A Predicted gene structure (within gDNA segment 115314 to 108970): Exon 1 114416 114411 ( 6 n); cDNA 310 315 ( 6 n); score: 1.000 Intron 1 114410 113580 ( 831 n); Pd: 0.000 (s: 0), Pa: 0.992 (s: 0) Exon 2 113579 113561 ( 19 n); cDNA 316 334 ( 19 n); score: 0.553 Intron 2 113560 112596 ( 965 n); Pd: 0.000 (s: 0), Pa: 0.872 (s: 0) Exon 3 112595 112576 ( 20 n); cDNA 335 354 ( 20 n); score: 0.700 Intron 3 112575 111021 (1555 n); Pd: 0.951 (s: 0), Pa: 0.000 (s: 0.86) Exon 4 111020 110800 ( 221 n); cDNA 355 574 ( 220 n); score: 0.873 MATCH C04HBa0031H05.1- SGN-E322543- 0.873 266 0.402 C PGS_C04HBa0031H05.1-_SGN-E322543- (114416 114411,113579 113561,112595 112576,111020 110800) Alignment (genomic DNA sequence = upper lines): GTTCAGAAGG AAGGCTTACA TTTCCCTATC AGAGAGTTGG CATGATAAAT GCACTGCGAG 114357 |||||| GTTCAG.... .......... .......... .......... .......... .......... 315 AATTGTCAAA TGCCCCGGAA GGAAAACACC TTAACAGCTT GTCAAAGACT GTTTGTAATT 114297 .......... .......... .......... .......... .......... .......... 315 TCCTTTTGTC CTGTTACAAG GATGATGGTA GGTTTCGGTA TCTTTATCAC ATTGATGTGT 114237 .......... .......... .......... .......... .......... .......... 315 GTGCTTGGCT TCTCTCTGAC AATTCCTTCT TATGCAATGT CTTCTTTATC CAGGTAATGA 114177 .......... .......... .......... .......... .......... .......... 315 AGAGGTCAAG CTTGCATGTT TATCTTGTTT GGCTGCTTGG ACTGCGAAAT GTGCTGATGC 114117 .......... .......... .......... .......... .......... .......... 315 AATTCAGCCC GATGTTATAT CTCTCATTGC GTCGGGCCTC AAAGAGAAGG AAGCACTTAG 114057 .......... .......... .......... .......... .......... .......... 315 AAGAGGTCAT CTTCGCTGCT TGCGAGTAAT GTGCCAAAAT GCTGATGCTC TTCAACATAT 113997 .......... .......... .......... .......... .......... .......... 315 GTCCCCTCTG CTGGCAGCTC TTATACAACT TGTTAAAACT GGTTACACGA AAGCAGCACA 113937 .......... .......... .......... .......... .......... .......... 315 ACGGTTGGAT GGCATCTATG CATTACTCTG TGTGGCAAAA CTTGCTGCAG TGGATGTTAA 113877 .......... .......... .......... .......... .......... .......... 315 AGCAGGTTTA TTTGGACTTT TCAGTTTTGT GGTGCATGAA TAATGGTCAC TGACCTAGTG 113817 .......... .......... .......... .......... .......... .......... 315 ACAAAAATTT GGTTACCGAC CTAAATTTTT GCATTCTGTG ATTGAGTTCA GTTACTTCTT 113757 .......... .......... .......... .......... .......... .......... 315 TTCATACGGA TTTTCACTTA TCACATTCTA ATTTTGCCTT TGCTGCTGTT GTTAGATGAG 113697 .......... .......... .......... .......... .......... .......... 315 ACTATGATAA AGGAGAAAAT TTGGTCATTG GTATCACAGA ATGAGCCGTC AGTGGTGCCA 113637 .......... .......... .......... .......... .......... .......... 315 ATTCCTCTGG TGAATATTCT GAGCTAATTT TTGGTTATTT TAAATGATTG TTTTTAGAAG 113577 || .......... .......... .......... .......... .......... .......AAC 318 TTGGCACAGA AGA-AGCATA AGATGAAATT CTCTCTGTTG GACCTTTATA TGCGGTTGAC 113518 | || | | ||| ||| AT-GCCCTCA AGACAGC... .......... .......... .......... .......... 334 GGCATTGACA GTGAAATGAC AATTTTTCTT GGCATGCTTT TAGTCTGAAC AATTAGAAGT 113458 .......... .......... .......... .......... .......... .......... 334 AACACTCTCG GCTCTAAAGT TGATGCTCTT TTCATAGGCC TCATCTCTTC AAATTTCATT 113398 .......... .......... .......... .......... .......... .......... 334 GACCTTTTTC CTTACCTCTA CTCTTCTTAG TGGGAGGTCT TAAGCTTTTG TGTTGTTTTT 113338 .......... .......... .......... .......... .......... .......... 334 TCACATTTTA TCACCTGACA GTCCAGGATG TTGGTTTACT ATTGACAAGT TACCAGTTAA 113278 .......... .......... .......... .......... .......... .......... 334 AAAAAAGATG TTGGTTTACT ATTCACATTT TGAGTGGTTT AGTCCCTAAG TATCTTAAGA 113218 .......... .......... .......... .......... .......... .......... 334 AGTTTTCAAC AATGTATGAG GTATAATGCC AAGATAATTT TATGCCCTTC TCTTCGAGGA 113158 .......... .......... .......... .......... .......... .......... 334 CCTATATCTT GATACAAGAT GCTTGAGAAA GTCTTAAATT TTTGTTGCAA TTTCTTTAAT 113098 .......... .......... .......... .......... .......... .......... 334 GCACTCTTGA CATGGCTCGA TACTCTTTCC AGGCCTCAAA ATTATCAATA GAGGACTGTT 113038 .......... .......... .......... .......... .......... .......... 334 TGGCTTGTCA TGACCTTTTT GAGGTGATGC TTGTAGATCA TTCACAAAGG TTAGTTTTAT 112978 .......... .......... .......... .......... .......... .......... 334 GGGTGAACAT GGGAATCCTA CTGTGATGAC GCTTCCACTC AGCTTGCTAT CTGTGCATAT 112918 .......... .......... .......... .......... .......... .......... 334 ATCTTATTTG TTGGAAGTAT CATTATTGAA GTTGAATGTC CCTTTTCTAC AGGGTATTGG 112858 .......... .......... .......... .......... .......... .......... 334 AGACTTTTGC AGTCAAGACG TTAATGCAGG TTAATTGGCA AGGTTTATTT AATTATGTGT 112798 .......... .......... .......... .......... .......... .......... 334 CATCATCCTT TAATGAGTTT GTCGTTATTT CTAACCGGTT CTTAATCTTT CACAGTTTAT 112738 .......... .......... .......... .......... .......... .......... 334 GCTCTTTTTA CTATGCCATC CAAATTGGGA TATCCGAAGA GCAGCTTATA ATTCTACGAG 112678 .......... .......... .......... .......... .......... .......... 334 GAGGATAGTT TCTGCTACCT CACAGTTATC TGAAACTTTA ATGGTTGAAT TTTCGAGTTA 112618 .......... .......... .......... .......... .......... .......... 334 TCTCTCTGTT GTTGGTGAAA AGGTTATTCA AATAAAGATG AGGTGAACTT TCTACACATG 112558 | ||| | |||||| | || .......... .......... ..TTCATTTA TATAAAGCTA AG........ .......... 354 CTTATGCCTT TAATATTCCC CACACTGAAC CTTTAGACAA AGGGATTTAA AAGAAAATTA 112498 .......... .......... .......... .......... .......... .......... 354 TGTTTGAAGA AGCCACTGTC TACCATCTCA AAAAAAGAAA AAAGAACCCA TTTTGTCTTG 112438 .......... .......... .......... .......... .......... .......... 354 GAGTGGACCT TGTTTGCACT GCAGCCATGA AAAAAGACAC AACTTATCGA GATTAGGTGT 112378 .......... .......... .......... .......... .......... .......... 354 TCTATTATGG ATTTTATAAC CTGATTTTGT CCAGGATGTA TATATCTTAG CTAGGAACAG 112318 .......... .......... .......... .......... .......... .......... 354 GATCAAATTT TAAGTGACAT ATCTAAGTCC TGCTGCAGTA CTCGAATGTG CCTTGGGGGG 112258 .......... .......... .......... .......... .......... .......... 354 GGGGGGGAGG GGGGAGTTTT AGAGGCAGTG TTGTGAAAAG CGCGCTTCAA GGCGAGGCGC 112198 .......... .......... .......... .......... .......... .......... 354 TACTGGTGCG CTTCTTTCTC CTGAGGCGAT GCGATCTGAA AAAGGCGCTT GCTTCAGATA 112138 .......... .......... .......... .......... .......... .......... 354 AAAAAGCGAG AAGCGACACT ATGGAAAAAG CGCTATAAAG TGCGCTTTTT TATAAAAAAG 112078 .......... .......... .......... .......... .......... .......... 354 CGTCAATTAG GTTTTTTTTT TAAAAAAAAT CTGAAATAGA TACAACTAAA TTTTCTTTCA 112018 .......... .......... .......... .......... .......... .......... 354 CGACTTTACG ACTTTACTCT TCTTTCGCTG CTTCTCTTCT TCACGACCGC GACTGCATCT 111958 .......... .......... .......... .......... .......... .......... 354 CTCTTAACCA GCTTCATCTG ATCGGTGAGT TTCTTTTCTC TTCGACCTGC TTCTCCTCTT 111898 .......... .......... .......... .......... .......... .......... 354 GTTGCTCTCT TTGTTTTTCC TTTTCTCCTC TTTGGGTAAT GCAAACAAGA CTCTTCTCTT 111838 .......... .......... .......... .......... .......... .......... 354 CTCTGATGTA GTTTTTTCTT CTTCTCTGCT GCGATCTGCT ACTGTTTCTT TTCACAATTA 111778 .......... .......... .......... .......... .......... .......... 354 CTGACCTGTT TTTTTGGTTA ATATTACTGC CTCCTCTGTT TTTTTCAATT CTTTTGCTGT 111718 .......... .......... .......... .......... .......... .......... 354 TTTTTTCGTT TTTATTTCTG TACACTGACT GTGATCAGTG TGTATGCTTG CTGCTCTGTT 111658 .......... .......... .......... .......... .......... .......... 354 TTTTATTTTT TTGACACTTC TTTTTTGCTT GTAGAGTTTG AGGATCTTGT TGAAGAATAT 111598 .......... .......... .......... .......... .......... .......... 354 GAGTTTGAGT CTTTGTGATT TAATTATGTT TTTGATTTTT TGCTTTGTAT GTTATGACTT 111538 .......... .......... .......... .......... .......... .......... 354 ATGAGTATTA TTGACTATCG ATTTTCATTT AATCTGAGAA TATATTACAT CTATTCAGTT 111478 .......... .......... .......... .......... .......... .......... 354 ATTTAATATT TTTTTATTTT TATACTAAAT GTCGCTTTTT TAAAAAAAGC GCGCGTTTCG 111418 .......... .......... .......... .......... .......... .......... 354 CTTCTGTGAA GCGAGCCCTC GTCGCTTTTT TCTGCTTCTC GCTTCCCGAA ACACTGGTTT 111358 .......... .......... .......... .......... .......... .......... 354 TAGGTGAAAT GGGTGGTCCT TCTGGTGTGG AAGGAAAGGA ATGGAATGTA TTTCAAAGAT 111298 .......... .......... .......... .......... .......... .......... 354 AGGCCCAGTT TTGTTCCGAA AGTGAAGCGG AATTATATTG TCTCTTTATT TTTGGTGTAA 111238 .......... .......... .......... .......... .......... .......... 354 TGAACAATGT ATAGAAGAAG TAGATGAACT AGTAGAATTT TTAGGAGCAC AGTAACTAGT 111178 .......... .......... .......... .......... .......... .......... 354 CTTTCTCTTG TTTCCTATTT ATCTCTCTTT TGGAGGTCTC CAACATATCT TTAATGGGGA 111118 .......... .......... .......... .......... .......... .......... 354 GGAATACAAT AATTGCAATT TCTCAAAGAA AAAAAAGTAT GGATGGATAT ATTAGTGCAT 111058 .......... .......... .......... .......... .......... .......... 354 AGGGTTCTGA AATTATAAAG TTCTTGGTAT AAGAAAGCTA GTTTCACCCT TCAGGGTGGC 110998 | | | ||||| || ||||||| .......... .......... .......... .......AGA ATGTTACCCT TCGGGGTGGC 377 CCAGTGGTTT GGGCTTGGGA CTTCCATGTT GGAGGTCTCA AGTTCGAAAC CCCGTGCCAG 110938 |||||||||| | |||||||| ||||||||| |||||||||| |||||||||| ||| |||||| CCAGTGGTTT GAGCTTGGGA CTTCCATGTA GGAGGTCTCA AGTTCGAAAC CCCTTGCCAG 437 CGAAAGCAAG GGGTTTTACT TTTGGGTCGA GCTCGTTGCA CCGAGTTTGC CTAGTGCAGG 110878 ||||||||| |||||| || ||| | |||| |||||| ||| || || |||| ||||||| || TGAAAGCAAG GGGTTTGCCT TTT-GATCGA GCTCGTCGCA CCAAGCTTGC CTAGTGCGGG 496 TTACCTCTCC TATGTGGTTT GCGAGCTATT GCATAGGAAA GGGTTTTTTA CCCTGTGCGT 110818 |||||||||| |||||||||| |||||||||| |||||||| || ||||| | ||||||| TTACCTCTCC TATGTGGTTT GCGAGCTATT GCATAGGAGC AGGGATTTTA CTCTGTGCGC 556 ACCCAATGAG TAGCGGCT 110800 | |||| | | |||||||| ATCCAAAGGG TAGCGGCT 574 hqPGS_C04HBa0031H05.1-_SGN-E322543- (111020 110800) ******************************************************************************** EST sequence 23 -strand 735 n (File: SGN-E327901-) 1 TTTGAGATTG CTCTCATCTT TTACATTATC CTGTTATCAT TTNGTCACCA CATTCATTAA 61 CATTAGCATA TTTGCTCTTC ATAATTACTC ACACATTTCT ACGTGAATGT TCATTTCATC 121 ATATGCCAAT GCACTTGGTC ATTTGTGTGT TTCACACTCT TGCTTAACCC TTCTAGGGTC 181 TTATCATTTC ATTACATAAT AATCATTTCA TCGTATTCCA ATACACATGT CAATTTACTG 241 TGTTTTACAC TCGTACTTAA CCCTTTTAGG GTTACACCAT TTCATTACAC AATTCTTAGG 301 TTCACTTATT TTTAAATGTA TGCTAGAGTT ATGGGTTTAT ACATACAAGC CATGAGGCTT 361 TATTCATAGT TCGTTAAGTG ACTCGTATCT TCCTAAGATT ATGTAGTATA AGACTTACGT 421 ATCTTGTATG TATGCCAAGA TCTTGATTTC GATCTAAGTA GGTGGCATTA TTTTTGAACA 481 TTTAATTCAC GTATGACTTA TGTATCAATA TGGAAATTTG GGCAAGGGAA CCCAAGTTGG 541 AATCCCTTAG ACAAAACTTA CATTTTTCCT TGATTTTATT TTTATTTATC ATGACATTAG 601 GACCCTAGAT CGAGCCCCAA CACTAACATT TCTTTTTAGT TCCTTTTCTT TAGAAATTCT 661 CTCCCTTGGC CAAGGGGTTG TGGGTTCAAA CCCCCCACAA CCCTCTTTTT TTTCCTATTT 721 ATTTTTCTTG TTCAT Predicted gene structure (within gDNA segment 137928 to 129873): Exon 1 135439 135390 ( 50 n); cDNA 178 223 ( 46 n); score: 0.620 Intron 1 135389 135347 ( 43 n); Pd: 0.601 (s: 0.62), Pa: 0.000 (s: 0) Exon 2 135346 135332 ( 15 n); cDNA 224 238 ( 15 n); score: 0.733 Intron 2 135331 134561 ( 771 n); Pd: 0.900 (s: 0), Pa: 0.288 (s: 0) Exon 3 134560 134556 ( 5 n); cDNA 239 243 ( 5 n); score: 0.800 Intron 3 134555 134439 ( 117 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.80) Exon 4 134438 134099 ( 340 n); cDNA 244 581 ( 338 n); score: 0.843 MATCH C04HBa0031H05.1- SGN-E327901- 0.814 410 0.558 C PGS_C04HBa0031H05.1-_SGN-E327901- (135439 135390,135346 135332,134560 134556,134438 134099) Alignment (genomic DNA sequence = upper lines): GTCATGCCAT GAGAGCAACA TGCATCATCA TACTAATCAT ATTGCACACA GCACATAACA 135380 ||| | ||| | ||| | || |||| | | ||| | ||| || | | GTCTTATCAT TTCA-TTACA T-AATAATCA T-TTCATCGT ATTCCA-ATA .......... 223 TCTTGAACAT AGCACATGAC ATATTGCATA TAGCACATAA CACTTTTCAT GTCCTTCATT 135320 ||||| || ||| | .......... .......... .......... ...CACATGT CAATTTAC.. .......... 238 CATATGCCAT GAGATCTTTG AATCATGGAC TTGACATCAG GACTTCCCAA AGTGAGGGCT 135260 .......... .......... .......... .......... .......... .......... 238 CAACATATGG GACCTCAACT AGGGAGCCTT CTTTATCAAA CACAGAGTCT GTTTCATTCA 135200 .......... .......... .......... .......... .......... .......... 238 CTCATACGTA CTTTATTTCA TTTCTTTCAT AGGCTAGTTT AAACACCATC TATACCTAGG 135140 .......... .......... .......... .......... .......... .......... 238 ATGTAGTTTA AGACTTCCAT CGCGTTCGCT GTGCAATGAT CAAGAATGAC CTAGTGTCAT 135080 .......... .......... .......... .......... .......... .......... 238 TACTTAAGTC TAGCTCACCT CCTTATCATC CTATCCTAAC ACCTTTGGTA TCATCATTTC 135020 .......... .......... .......... .......... .......... .......... 238 ATTATATGCA TTATTTGAAG CTGGACTCAT TCATTCATTA GGAACTTTAA CTTTAACTGA 134960 .......... .......... .......... .......... .......... .......... 238 CATAGATCAT GTGAGCATCA TGAAATCCAG TGTCTCCCTC ACACCAAAAA TAAGTGGAAT 134900 .......... .......... .......... .......... .......... .......... 238 CACCGGCCAA AGTGACCCAA AACATGATAG CGTACATGAG AATTGAAACC CCCTTGATCT 134840 .......... .......... .......... .......... .......... .......... 238 CTATACTGGT AATATAGGTT CAAAGACTAG GAGATATAAG GAGACCCATG CCCGGCCTAC 134780 .......... .......... .......... .......... .......... .......... 238 TGGACAGTCT CATCTCATGA GAGTTACGTG AACCTCCTCC CTTCTCGAAA GAAGGCATCA 134720 .......... .......... .......... .......... .......... .......... 238 CCGTTCATAG CTAGTCTATC GGTGCTAAGT ATAAAGTTCC ATTACATTTA ACTCATACGT 134660 .......... .......... .......... .......... .......... .......... 238 TATGGAAGCA AGATTCTAGT ATGAGGACAC CATATCTCAA TAGATGATTT CTCATCTTAT 134600 .......... .......... .......... .......... .......... .......... 238 CATTAGTATT AACTATGTTA ATCTTATTAC TTTCATTAGA GTGTTCATAG AGACTGGTCT 134540 |||| .......... .......... .......... .........T GTGT...... .......... 243 TTTCATTAAC TTTACACTCT CATAGGTGAG TACGTTTTGG TAACATTTAC TTAGGCTTAT 134480 .......... .......... .......... .......... .......... .......... 243 TTGATACTGT TCTCATCTTT TACATTAGCC TAATATCATA GTATACACTC TTACTTGACC 134420 | ||||||| ||||| ||| .......... .......... .......... .......... .TTTACACTC GTACTTAACC 262 ATTATAGGGT TACCTCATTT CATTACATAT ATCTTAGGTT CACTTATTTT TAAATGTATG 134360 || |||||| ||| ||||| ||||||| | ||||||||| |||||||||| |||||||||| CTTTTAGGGT TACACCATTT CATTACACAA TTCTTAGGTT CACTTATTTT TAAATGTATG 322 CTAGACTTAT GGGTTTATAC ATACAAGTCA TGAGACTTCG CTCATAGTTC ATTTAAGTGA 134300 ||||| |||| |||||||||| ||||||| || |||| ||| ||||||||| |||||||| CTAGAGTTAT GGGTTTATAC ATACAAGCCA TGAGGCTTTA TTCATAGTTC -GTTAAGTGA 381 TTCATATCTT CCTAAAATTA TGTTGTACAA GACTTATGCA TCTGGTATGT ATTCCAAGAT 134240 || |||||| ||||| |||| ||| ||| || |||||| | | ||| |||||| || ||||||| CTCGTATCTT CCTAAGATTA TGTAGTATAA GACTTACGTA TCTTGTATGT ATGCCAAGAT 441 CTCGATTTCA ATCTAAGTAG GCAGCATTAG TCTTGAATAT TTAATTTACG TATGACTTAG 134180 || |||||| |||||||||| | |||||| | ||||| || |||||| ||| ||||||||| CTTGATTTCG ATCTAAGTAG GTGGCATTAT TTTTGAACAT TTAATTCACG TATGACTTAT 501 GAATCAATA- CGAAATTTAG GCAAGGGAAC CCGATTTCAA ATCCCTTGGA AAACACTTTA 134121 | ||||||| ||||||| | |||||||||| || | || | ||||||| || || || ||| GTATCAATAT GGAAATTTGG GCAAGGGAAC CCAAGTTGGA ATCCCTTAGA CAAAAC-TTA 560 CATTTTTCTT TATATTTAAT TT 134099 |||||||| | | |||| || || CATTTTTCCT T-GATTTTAT TT 581 hqPGS_C04HBa0031H05.1-_SGN-E327901- (134438 134099) ******************************************************************************** EST sequence 25 -strand 561 n (File: SGN-E328085-) 1 AGGGTCTTAT CATTTCATTA CATAATAATC ATTTCATCGT ATTCCAATAC ACATGTCAAT 61 TTACTGTGTT TTACACTCGT ACTTAACCCT TTTAGGGTTA CACCATTTCA TTACACAATT 121 CTTAGGTTCA CTTATTTTTA AATGTATGCT AGAGTTATGG GTTTATACAT ACAAGCCATG 181 AGGCTTTATT CATAGTTCGT TAAGTGACTC GTATCTTCCT AAGATTATGT AGTATAAGAC 241 TTACGTATCT TGTATGTATG CCAAGATCTT GATTTCGATC TAAGTAGGTG GCATTATTTT 301 TGAACATTTA ATTCACGTAT GACTTATGTA TCAATATGGA AATTTGGGCA AGGGAACCCA 361 AGTTGGAATC CCTTAGACAA AACTTACATT TTTCCTTGAT TTTATTTTTA TTTATCATGA 421 CATTAGGACC CTAGATCGAG CCCCAACACT AACATTTCTT TTTAGTTCCT TTTCTTTAGA 481 AATTCTCTCC CTTGGCCAAG GGGTTGTGGG TTCAAACCCC CCACAACCCT CTTTTTTTTC 541 CTATTTATTT TTCTTGTTCA T Predicted gene structure (within gDNA segment 136188 to 129873): Exon 1 134436 134099 ( 338 n); cDNA 72 407 ( 336 n); score: 0.845 MATCH C04HBa0031H05.1- SGN-E328085- 0.845 338 0.602 C PGS_C04HBa0031H05.1-_SGN-E328085- (134436 134099) Alignment (genomic DNA sequence = upper lines): TACACTCTTA CTTGACCATT ATAGGGTTAC CTCATTTCAT TACATATATC TTAGGTTCAC 134377 ||||||| || ||| ||| || ||||||||| |||||||| |||| | || |||||||||| TACACTCGTA CTTAACCCTT TTAGGGTTAC ACCATTTCAT TACACAATTC TTAGGTTCAC 131 TTATTTTTAA ATGTATGCTA GACTTATGGG TTTATACATA CAAGTCATGA GACTTCGCTC 134317 |||||||||| |||||||||| || ||||||| |||||||||| |||| ||||| | ||| || TTATTTTTAA ATGTATGCTA GAGTTATGGG TTTATACATA CAAGCCATGA GGCTTTATTC 191 ATAGTTCATT TAAGTGATTC ATATCTTCCT AAAATTATGT TGTACAAGAC TTATGCATCT 134257 ||||||| | ||||||| || ||||||||| || ||||||| ||| ||||| ||| | |||| ATAGTTC-GT TAAGTGACTC GTATCTTCCT AAGATTATGT AGTATAAGAC TTACGTATCT 250 GGTATGTATT CCAAGATCTC GATTTCAATC TAAGTAGGCA GCATTAGTCT TGAATATTTA 134197 |||||||| ||||||||| |||||| ||| |||||||| |||||| | | |||| ||||| TGTATGTATG CCAAGATCTT GATTTCGATC TAAGTAGGTG GCATTATTTT TGAACATTTA 310 ATTTACGTAT GACTTAGGAA TCAATA-CGA AATTTAGGCA AGGGAACCCG ATTTCAAATC 134138 ||| |||||| |||||| | | |||||| || ||||| |||| ||||||||| | || |||| ATTCACGTAT GACTTATGTA TCAATATGGA AATTTGGGCA AGGGAACCCA AGTTGGAATC 370 CCTTGGAAAA CACTTTACAT TTTTCTTTAT ATTTAATTT 134099 |||| || || || |||||| ||||| || |||| |||| CCTTAGACAA AAC-TTACAT TTTTCCTT-G ATTTTATTT 407 hqPGS_C04HBa0031H05.1-_SGN-E328085- (134436 134099) ******************************************************************************** EST sequence 65 -strand 750 n (File: SGN-E546519-) 1 CAAGGCAATN ATAGTCAGTT TTCAAGGTCC ACACAACAGT TCCAAGGAAA TCTGTTCAAA 61 GATGTATGCA GAGGTTTTTG AGTGAAGAAA TGCAGAAGAG ACCACCTACG GAGCTTGTGA 121 CGGTCCGTCA TGCTTGTGAC GGTACGTAGG TGGCAGCATA GTGCAGCTGC TGAAGGAATA 181 TGGGGAAGTC TGACCAAGTG TGGGGTTACG GAGTCCATGA CGGTCCTTCG TGTCTATGAC 241 GGTCCGTCCT GCAGGTTCTT CATGAAGTTC AGAGAAGTAA TCCCAGTACC CATATTCCAA 301 GAGTTTAAGT GTTTTGGAAC GAAGACCCTC GACGGACCGT TGTGCCTTTG ACGGTCCGTC 361 ATACTTGCCG TCGAGGGTAA TGAAGAGAGA AGCAGAAGAA ATTTCATCAA GTATGGGACG 421 ACGGAGTCCA TGACGGTCCG TCGTGACCAC GATGATCCGT CGCGAGGTCC GTTGACCCAG 481 CCGCGTTTTG ACAAATTTCC AGCAAATAGA GTCCTTATTT AATTAGGTTT TTAATTTCTA 541 TAAATAGTTC AAAAAAACCT CATTTTTGAG GTTAGACTCT GGATAATTAT TAGACTCTGT 601 GTATTAGTGT TAGACTTTTG ATTATCATTA GACTTTTTGT GAGATTCTTG ATTACTTTGA 661 AATTCTTGCA AGTGATTGTT GGTGATTAAT CAAGAAAACT TTCGGATTTT AAAAAAAAAA 721 AAAAAAAAAC TCGAGACTAG TCTCTCTCTC Predicted gene structure (within gDNA segment 142328 to 133631): Exon 1 140975 140951 ( 25 n); cDNA 108 132 ( 25 n); score: 0.840 Intron 1 140950 136986 (3965 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.88) Exon 2 136985 136492 ( 494 n); cDNA 133 623 ( 491 n); score: 0.833 Intron 2 136491 134955 (1537 n); Pd: 0.000 (s: 0.58), Pa: 0.070 (s: 0) Exon 3 134954 134950 ( 5 n); cDNA 624 628 ( 5 n); score: 1.000 PPA cDNA 711 730 MATCH C04HBa0031H05.1- SGN-E546519- 0.833 524 0.699 C PGS_C04HBa0031H05.1-_SGN-E546519- (140975 140951,136985 136492,134954 134950) Alignment (genomic DNA sequence = upper lines): ACGGACCTCA TGACGGTCCG TCATAGTCAC GACGAGCCGT CATAGGTCCC GTCGTGTGAT 140916 ||||| || |||||||||| |||| ACGGAGCTTG TGACGGTCCG TCATG..... .......... .......... .......... 132 ACAGTTTCAA TATTACTAAC ACACTATTTT CAAAGTTTAA TGTCATATGA GCTTGCCTGT 140856 .......... .......... .......... .......... .......... .......... 132 CTTGCTTGCC ACTACTCATA CTAATATTGC CCCTTTACAG GTACTATCGA CTATGGCACC 140796 .......... .......... .......... .......... .......... .......... 132 CAAGCAAGAC CGCACTTACG CACGCGGGCG ATCTAAGTCT GTCGCCCCGT CTTCCCGCAT 140736 .......... .......... .......... .......... .......... .......... 132 GGTCATCGGC TCTGATGATG AGCAGGACCC TGAATACATG CCCCCAGGCA CCTCCGCCCC 140676 .......... .......... .......... .......... .......... .......... 132 TTCCCGTGCT ACACATGCCC CCAGAGCCAC ACCCAAGACG GTGGCGTCCG GCGTAGTCAC 140616 .......... .......... .......... .......... .......... .......... 132 TGCCTCCCAG TCTGATGAGG AGCGCACACT GACCGGCACA CCCTCTGGGT CGGCCACAAA 140556 .......... .......... .......... .......... .......... .......... 132 CGAGGAAGGA GCGTCTGGCT CCTTAGGAGT ATCCTGGTCC GAGGAAGCTT CAGGATCTGC 140496 .......... .......... .......... .......... .......... .......... 132 TGAGGTTCCC GCACCCGCCA CTGCTGCAGC ATCGGCCTCG TTTAATGAGG CTGACAATTC 140436 .......... .......... .......... .......... .......... .......... 132 AGACTCTACA TCCGCGCACC AGCCCAGGTC CCCACCCCAG CCTCTGACCA GCCAAACCGA 140376 .......... .......... .......... .......... .......... .......... 132 TGGTGTGTTG AAGGCCAGTT TCAAGTTTAC TCAGACGCGA AGTTCTTGAC CGATAAAGGA 140316 .......... .......... .......... .......... .......... .......... 132 GTAATGACTC GAAAACTCAT CCTGGAGCGA CGGGTACCTA CAGGAAGTCT CCTCTCGATG 140256 .......... .......... .......... .......... .......... .......... 132 CCGGAGATCC ACAACACATT CACCAGGCAT CGCTTAGAGT GGACAGCCCG TCCGTTGGGA 140196 .......... .......... .......... .......... .......... .......... 132 CGATACAGCG AGGAGATGGT CCAAGAGTTC TACGCGTCCT ACGTAGCGAA TCTCCGATCA 140136 .......... .......... .......... .......... .......... .......... 132 CAGATCGACA GGCGGACTGC TCCCGCTAAA CAGTCCCCAT TGGAGCAGGT TCTAGTCCGG 140076 .......... .......... .......... .......... .......... .......... 132 GGTGTGCAGG TTGACATTTC CCTGCCCGCC ATTCGCCGGT TCCTATACGG CGAGAGTGCA 140016 .......... .......... .......... .......... .......... .......... 132 GATGCTACTC GGACCCCCAT CACTGCCGAG TTTGACTACC GCTGGCAGAT AGTGAAGGAT 139956 .......... .......... .......... .......... .......... .......... 132 GGACAGTTCC TGCGAGAGCC AGCACTGAGG GAGACCACCA AGCGGTGGAT GGCCCTGCAC 139896 .......... .......... .......... .......... .......... .......... 132 TTATCAGTCG ACGGAGAGGG TGTCGATTGG GTCACCGAGC CCAAGGGGGC CATCAAGAAG 139836 .......... .......... .......... .......... .......... .......... 132 GCCAACCTCA CGTTCGTCGC CAAGTTCTTG TGGTTGCTCG TGCGTCACTG CCTTTCCCCC 139776 .......... .......... .......... .......... .......... .......... 132 ACAGCTGCTA ATAACATAGT CACCTGGGAT CGAGCAGTGC TGATGGCGGC GATGATAGCC 139716 .......... .......... .......... .......... .......... .......... 132 GGCTTCGAGG TGGACTATGC ATGGCTTCTC TAGGCAGGCA TGCACGAGAG GGCATTCAAG 139656 .......... .......... .......... .......... .......... .......... 132 GTCACTACCA CCTACCCCTT TCCGTGCATG ATCTTTGCCC TTTGCAGATC TGTAGGTGTG 139596 .......... .......... .......... .......... .......... .......... 132 CCCATATGGC ACATAGATCA GTTGAGGACC CCGCCGGGTA CCATTGACGT CGGCCTCATC 139536 .......... .......... .......... .......... .......... .......... 132 AGAGACGAGG CCAATGAGTT GGCCCCACGT CGAGGGCCCC GTCCAGATCT GCCACCACTA 139476 .......... .......... .......... .......... .......... .......... 132 TCTGATGATC TTGCGGAAAC GGTGGCCCAG GCCCGCACAG CTACACAGGC ATCCACAGAC 139416 .......... .......... .......... .......... .......... .......... 132 ACTACCCCGA TCGAGTCTAT CCCGGGTAGT AGCACAGCCC CTCTATCGAC ACCGGCCTCG 139356 .......... .......... .......... .......... .......... .......... 132 CTTGCTCGAG TCCAAAAACA GGAGGCACAA ATGGCCACTC TTCTGCATCA TATCCAGCTG 139296 .......... .......... .......... .......... .......... .......... 132 TGGATGCAGA AGTCTATTGC TGAGTCTGAA GCGCGTATGG AGAGGCAGAT GCAGCGGAAG 139236 .......... .......... .......... .......... .......... .......... 132 ATTGCTGAGG TTAACCAGCG CCTAGATGCC TTTGAATTGA GAGTATTAGC TCGACCAGCC 139176 .......... .......... .......... .......... .......... .......... 132 CTTCCGATAG ATGTGTCGAC TCTTCAGGCT GCAGTCGACA GTCTTCGTGC AGACATCGAC 139116 .......... .......... .......... .......... .......... .......... 132 ACGATTCTAG AGGCAAGAGT GCCGGAGTCT GTCGAGCCTG CTGAGGATAC TGTATTGGCG 139056 .......... .......... .......... .......... .......... .......... 132 GCCCTGTTTC CTACTCCAGA CATTCCCCTA TCTTCCCCGA GAGAGAGTGC CAAGAGGCGG 138996 .......... .......... .......... .......... .......... .......... 132 AGGGGTCGAT AAGAGGATGA GGCGCGAGCA AGGAAGAAGG AGCGCCGAGA GATGGAGGCC 138936 .......... .......... .......... .......... .......... .......... 132 GCGAGGAGAG CCTCACTTGC TGAGGCGGAG GCACACCAGA TCAGAGCATC ACAGATAGCG 138876 .......... .......... .......... .......... .......... .......... 132 GTTGGGGCGT CTAGCTCCCG CACTGTAGAG ACAGTAGGAG GCACTACTGA GGGTGCGGTT 138816 .......... .......... .......... .......... .......... .......... 132 GTTGCTGAGG ACATCACTTA GGGTGTCTAG ATTGCAGAGG ATGTGGGTTC TGGGAAACCA 138756 .......... .......... .......... .......... .......... .......... 132 GACCCACCAA CTTGTTGATC AACGGCGCTA TGAGCCACAG GTTTGCTTCA CCTACCCCTC 138696 .......... .......... .......... .......... .......... .......... 132 TAATCTTTAG ATATTTTTTT TATGCATTGG GGACAATTGC ATGCTTTTTT GTTGGGGTGG 138636 .......... .......... .......... .......... .......... .......... 132 GGTAAATGGA AAGTGAGTGT TAGGGTGAAG TCTGAGTAGC CCAACTCACT ATCCTTTTTT 138576 .......... .......... .......... .......... .......... .......... 132 GGGATTTTCT TGCCTGTGTT CTTTTTCCCC AATAGACTGA TTACTTTTTC TGTTGAACCG 138516 .......... .......... .......... .......... .......... .......... 132 GCACGTTATA TCTTTTGTAC ATAGTTTAAC TCTGAAGCAT GATGGCTAAA ATGATATCCC 138456 .......... .......... .......... .......... .......... .......... 132 GATAAAACTG GAAAAGGTTG CATGAAAAGG CGTAGTAACT GATAATTGTG TGGATCTAAA 138396 .......... .......... .......... .......... .......... .......... 132 CATGAAATAG AGTTACACTA TTGCACTACC CTAAATCTTC AAGTCGAACT AGGTGTCTGA 138336 .......... .......... .......... .......... .......... .......... 132 TAATCTGGTA TAGTGATGAG ATGTCAAGTG AGTGTGAGGA AAGTTGAATA GTCCACTACT 138276 .......... .......... .......... .......... .......... .......... 132 GATACTGAGC TAGAACTTGC CTGGTTAGTC CTGCTAAAAG TAAGTTGTAA CAGACAATTA 138216 .......... .......... .......... .......... .......... .......... 132 GGAAAGGATC ATAGGCCCTT ATTCAATATA GCCCATTTCT AGCCTAAATA AAAGAAACCA 138156 .......... .......... .......... .......... .......... .......... 132 AATGAAAGTT ATCCTTCTTT GATCCAAATA ATTTGAGCTT AAAATTAGTC CTTTCTTTTT 138096 .......... .......... .......... .......... .......... .......... 132 CATCCCAACT GATCTTTTCT AGGAACAATA TGTTGGCCCT GGTCCCTCCT TGGACATGTG 138036 .......... .......... .......... .......... .......... .......... 132 CACCTCAGCT TATGCCAAAA GCATAAGTTG AGGGTGGCTA ATGTATAAAC AACCTTCGTT 137976 .......... .......... .......... .......... .......... .......... 132 ATGTCCCTGA CCCGACTTTG GGTATTGTGT ACCTTGACTC ATGGCAAAAC CATGAGTTGA 137916 .......... .......... .......... .......... .......... .......... 132 GGGTGGTTGT TTTGAGGAAT GCTCTGGAAA GTGGGGTTGA AAGAACAAAG AGAGAGAAAG 137856 .......... .......... .......... .......... .......... .......... 132 AACAAAAGTA AAGTGACTCA AGAACTCTTT AAAAAAAAGA GAAATATTTA AGAATTACAA 137796 .......... .......... .......... .......... .......... .......... 132 ACGAGAAAAG AAAAGAGTTA CTTACACAAA TGAAGAAAGA AGGAAAACAG CAAGGTGAAA 137736 .......... .......... .......... .......... .......... .......... 132 GAATAGGAGA AACTGGGCGA GATAAAGTGA TAGAAAGTGG AAGGTTTAGC CGATATGTCA 137676 .......... .......... .......... .......... .......... .......... 132 ACGAGGGCAG AAAGTCACTA AAGTATACCT AAATATACCC TACCTGACTC TGAGCCTACG 137616 .......... .......... .......... .......... .......... .......... 132 TTACAAGCTA AAAAAAGTCC TATCGTGATC CTAAGGGTTG TATAGCGAAC TTAAGGCAGT 137556 .......... .......... .......... .......... .......... .......... 132 AAAAATAAGG GCAAGCTTAT GGCAATAGGT ATGAATGAGT GTGACTTCGT TCTGAGAGCG 137496 .......... .......... .......... .......... .......... .......... 132 AGTGTTGAAA TGTAATCCTT ATACTCAAAC TGAAATCATT GTGTGAAAAA TGAGGATTTT 137436 .......... .......... .......... .......... .......... .......... 132 GTTCTAAAGT GAGGACACTA GTTGCTATAC CGGAATTGTT AGCCTCTCGG TGAGAAATTG 137376 .......... .......... .......... .......... .......... .......... 132 AAGAGGATAG GTGTTAGTGC GTGGTGAGTC TGTGTCATGT TCGAATCCCA CAAAATTCAA 137316 .......... .......... .......... .......... .......... .......... 132 GCCTAATAGT GATAGCATGC ATAGATTTGA TGAGATTAAT CGGGATTGAT AGCCAAATGA 137256 .......... .......... .......... .......... .......... .......... 132 TTGCAAAGGA TAAAAACATG AATACTATTG TACAAAGATT GTGTAGTGAG TCATAGTGCT 137196 .......... .......... .......... .......... .......... .......... 132 TCGCTTGAGG ACAAACAACA AATTTAAGTT GAGGGTGTTG ATATACCGTG GTTTCACAGT 137136 .......... .......... .......... .......... .......... .......... 132 ATAATTAATA CTTTTTCCTT AAGTTTAGTG TATTTGAAAG CCCTTTTTGT GCTAATTTTG 137076 .......... .......... .......... .......... .......... .......... 132 ATATAAGTTT CTCTTTGTTT TGCAGGAAAT CTGTCCAAAG CTGAATGCGG AGATTTTGAG 137016 .......... .......... .......... .......... .......... .......... 132 CGAAAAATGC AGAAGAGACC ACCTACGGAG CTTATGACGG TCCGTAGGTG GCAGCGTAGA 136956 ||| |||||| | |||||||| ||||| ||| .......... .......... .......... CTTGTGACGG TACGTAGGTG GCAGCATAGT 162 GAAGCTGCTG AAGGAAGATG GGGAAGCCTG ACCAAGTGTG GGATTAAGAA GCTTGTGACG 136896 | |||||||| |||||| ||| |||||| ||| |||||||||| || ||| | | | ||||| GCAGCTGCTG AAGGAATATG GGGAAGTCTG ACCAAGTGTG GGGTTACGGA GTCCATGACG 222 GTCCGTCATG GCTATGATGG TCCGTCCTGC AGGTTCGTCG TGAAGATTAG AGAAGTGATC 136836 |||| || || |||||| || |||||||||| |||||| || ||||| | || |||||| ||| GTCCTTCGTG TCTATGACGG TCCGTCCTGC AGGTTCTTCA TGAAGTTCAG AGAAGTAATC 282 CTAGTACCCA GATTCCAAGA GTTGAAGTAT TTTGAAACG- AGACCCTCGA CGGACCGTTG 136777 | |||||||| ||||||||| ||| |||| | |||| |||| |||||||||| |||||||||| CCAGTACCCA TATTCCAAGA GTTTAAGTGT TTTGGAACGA AGACCCTCGA CGGACCGTTG 342 TGCTTATGAC AGTCCGTCAC ACTTGCCGTC GAGGGGAATG AAGAAAGCAG CAGAAG-AAT 136718 ||| | |||| |||||||| |||||||||| ||||| |||| |||| || || |||||| ||| TGCCTTTGAC GGTCCGTCAT ACTTGCCGTC GAGGGTAATG AAGAGAGAAG CAGAAGAAAT 402 TGCACCAAGT ATGGGACGAC GGAGTCCACG ACGGTCTGTC ATGACCACGA CGGTCCGTCG 136658 | || ||||| |||||||||| |||||||| | |||||| ||| ||||||||| | ||||||| TTCATCAAGT ATGGGACGAC GGAGTCCATG ACGGTCCGTC GTGACCACGA TGATCCGTCG 462 CATGGTCCGT CGACCCAGCC GCGTTTTGGC AGATTTCCAG TAATTAGAAT CCTTATTTAA 136598 | ||||||| ||||||||| |||||||| | | |||||||| || |||| | |||||||||| CGAGGTCCGT TGACCCAGCC GCGTTTTGAC AAATTTCCAG CAAATAGAGT CCTTATTTAA 522 TTAGGTTTTT ATTTTTTTAT AAATAGTTC- AAAAAACCTC GTTTTTGAGG TTAGACTCGG 136539 |||||||||| | ||| ||| ||||||||| |||||||||| ||||||||| |||||||| | TTAGGTTTTT A-ATTTCTAT AAATAGTTCA AAAAAACCTC ATTTTTGAGG TTAGACTCTG 581 TGATATTAAA CCTTATATTG CTAGACTTGT GTTTGGAGTG TTTGATTGTT AGAGATTCTT 136479 |||| | | | || | | | || | || || | ||||||| -GATAAT-TA TTAGACTCTG -TGTATTAGT G-TTAGACT- TTTGATT... .......... 623 ACAAGTGATT TTTGGTGATT AATCAAGCAA ATTTTCGGAC TTTATTCTTT CTCATTGAAG 136419 .......... .......... .......... .......... .......... .......... 623 TAAGTACATG AATTCTTGTT TACCATATTT GAATATTGTG TTTATGGCTA TGAGGAACTA 136359 .......... .......... .......... .......... .......... .......... 623 AACTCCATAT CTAGGGTTGT GGGAACCATA GGCAAATAAT GAGATAAACC CTAGCTAAAA 136299 .......... .......... .......... .......... .......... .......... 623 TAACAATTCT AGAATCGTGT CTTGCATGTA TTAATAATTC TTTCGCTTAG AAGTCTTTTT 136239 .......... .......... .......... .......... .......... .......... 623 AACGGATGAT CAACGTTAGA ACTCGCCTTA ATGCTACTTG CCGGACCAAG GAGGTAGATA 136179 .......... .......... .......... .......... .......... .......... 623 ATAGGAAAAG AATTATTAAC ATAGATTTAG TGTATACTAT CTAATAGGCT AGTATTGATT 136119 .......... .......... .......... .......... .......... .......... 623 GGTACGATGT AATAACTTAG TCAAATATAG AATACGATGC TTAATATGAG GTAAGGATAA 136059 .......... .......... .......... .......... .......... .......... 623 GGGTTAGGAA AGCAACACAC GTAGCCGGAC CAAGGTGCGG AGTGAGATTT TCTAGATGCC 135999 .......... .......... .......... .......... .......... .......... 623 GGACCAAGGA TTTAGAAATA CATAACTTAT CACTTTGCAT GCAAGATACT AGGAAAGAAT 135939 .......... .......... .......... .......... .......... .......... 623 TGTTATAGTT AGAATTATCA AGTTATAAAC CTGTGGGGAA CACGTAAACC CTAGTTACTT 135879 .......... .......... .......... .......... .......... .......... 623 TGATTACTTG ACTAAAACTC AACATTAAAA GCTGTTAAGT GTCTCTTTCA AGTTCGTTAG 135819 .......... .......... .......... .......... .......... .......... 623 TTATTTTTGC TCATTAGGAA ATACAAACCC CCCTTTTATG ATTTTTACTT TCTAAGTAAT 135759 .......... .......... .......... .......... .......... .......... 623 AACAAGTTGA AGTTAAGTCT AGACTATTTT CCTCGTGGGA ACGATCCCAA CCTCACTAGT 135699 .......... .......... .......... .......... .......... .......... 623 TGGGTTATTT ACTTGACGCG ACCGCTTTAC TTCTCATTTG AGAAGTAAGT TTGAGCGTAT 135639 .......... .......... .......... .......... .......... .......... 623 CAAGTACACA CTTGTACTAA GTATGGGTAT ATGAAAGCAC ACAGCAAGGA CAAGCATGAT 135579 .......... .......... .......... .......... .......... .......... 623 TAAGAATAGC TCTTTCCTAA CAACGTGATT ATGGAAAGTC AAGTCAGTGG ACTTGCCAAA 135519 .......... .......... .......... .......... .......... .......... 623 TTGGGAGTAA GAAAGTTAGT GAGCTTTCCA AATTTGGATT GGGAAAGTGA GTGAACCTTC 135459 .......... .......... .......... .......... .......... .......... 623 CAAATTTTGG ATTAGGAAAG TCATGCCATG AGAGCAACAT GCATCATCAT ACTAATCATA 135399 .......... .......... .......... .......... .......... .......... 623 TTGCACACAG CACATAACAT CTTGAACATA GCACATGACA TATTGCATAT AGCACATAAC 135339 .......... .......... .......... .......... .......... .......... 623 ACTTTTCATG TCCTTCATTC ATATGCCATG AGATCTTTGA ATCATGGACT TGACATCAGG 135279 .......... .......... .......... .......... .......... .......... 623 ACTTCCCAAA GTGAGGGCTC AACATATGGG ACCTCAACTA GGGAGCCTTC TTTATCAAAC 135219 .......... .......... .......... .......... .......... .......... 623 ACAGAGTCTG TTTCATTCAC TCATACGTAC TTTATTTCAT TTCTTTCATA GGCTAGTTTA 135159 .......... .......... .......... .......... .......... .......... 623 AACACCATCT ATACCTAGGA TGTAGTTTAA GACTTCCATC GCGTTCGCTG TGCAATGATC 135099 .......... .......... .......... .......... .......... .......... 623 AAGAATGACC TAGTGTCATT ACTTAAGTCT AGCTCACCTC CTTATCATCC TATCCTAACA 135039 .......... .......... .......... .......... .......... .......... 623 CCTTTGGTAT CATCATTTCA TTATATGCAT TATTTGAAGC TGGACTCATT CATTCATTAG 134979 .......... .......... .......... .......... .......... .......... 623 GAACTTTAAC TTTAACTGAC ATAGATCAT 134950 ||||| .......... .......... ....ATCAT 628 hqPGS_C04HBa0031H05.1-_SGN-E546519- (140975 140951,136985 136492) ******************************************************************************** EST sequence 39 -strand 695 n (File: SGN-E241731-) 1 ATTCTATTAT TAGATATATA TGAATATTGT GATTATGACT ATGGGTAACT AAGCTACATA 61 ACTATGGTTG TGGGAACCAT GGGTGAATAA TGAGGTAAAA TCTAACTAAA ATAACAATTC 121 TAGAATAGTG TCTTGCATGT ATTGATAATT GTTTTGCTTA GAAGTCTTTT TAACGGATGG 181 TCAACATTAG AACTCGCCTT AGTGCTACTT GCCGGACCAA GAAGGTAGAT AATAGCAAAA 241 GAATTATTAA CATAAATTTA GTGTATACTT TTTGATAGGC TAGTATTGAT TGGTACGAGG 301 TAATAACTTA GTCAAATATC GAATACAATG CTTAATATGA GGTAATGGTA AGGGTTTATA 361 TAGCAACACA CGTAGACGGA CCAAGGTGCG TAGTGATATT TTCTAGATGC AAGACCAAGG 421 ATATAGAAAT ACATAACTTA TTACTTTGTA TGCAAGATAC TAGGAAAGAA TTGTTATAGT 481 TAGAATTATT AAATTAGGAA CTTGTGGAGA ACACTTAAAC CCTAGTTAAT TATATTATTT 541 GATTAAATTC CAACATTTGA ATTTGTTAGT TGCCTACTTA AATTTAGCTA GCTATTTCCA 601 TTCATTTAGA ACTAAAACCC CCCTTTTTAT TGTCTTTGTT TTCTAAAGAA ATAATTGACT 661 AACTAATAGT AATAACAAAT TGAAAATAAC TCTGA Predicted gene structure (within gDNA segment 137964 to 133261): Exon 1 136403 135782 ( 622 n); cDNA 7 627 ( 621 n); score: 0.859 MATCH C04HBa0031H05.1- SGN-E241731- 0.859 622 0.895 C PGS_C04HBa0031H05.1-_SGN-E241731- (136403 135782) Alignment (genomic DNA sequence = upper lines): TTGTTTACCA TATTTGAATA TTGTGTTTAT GGCTATGAGG AACTAAACTC CATATCTAGG 136344 || || | ||| |||||| ||||| |||| | ||||| | |||||| || |||| ||| | TTATTAGATA TATATGAATA TTGTGATTAT GACTATGGGT AACTAAGCTA CATAACTATG 66 GTTGTGGGAA CCATAGGCAA ATAATGAGAT AAACCCTAGC TAAAATAACA ATTCTAGAAT 136284 |||||||||| |||| || | |||||||| | ||| ||| | |||||||||| |||||||||| GTTGTGGGAA CCATGGGTGA ATAATGAGGT AAAATCTAAC TAAAATAACA ATTCTAGAAT 126 CGTGTCTTGC ATGTATTAAT AATTCTTTCG CTTAGAAGTC TTTTTAACGG ATGATCAACG 136224 ||||||||| ||||||| || |||| ||| | |||||||||| |||||||||| ||| ||||| AGTGTCTTGC ATGTATTGAT AATTGTTTTG CTTAGAAGTC TTTTTAACGG ATGGTCAACA 186 TTAGAACTCG CCTTAATGCT ACTTGCCGGA CCAAGGAGGT AGATAATAGG AAAAGAATTA 136164 |||||||||| ||||| |||| |||||||||| ||||| |||| ||||||||| |||||||||| TTAGAACTCG CCTTAGTGCT ACTTGCCGGA CCAAGAAGGT AGATAATAGC AAAAGAATTA 246 TTAACATAGA TTTAGTGTAT ACTATCTAAT AGGCTAGTAT TGATTGGTAC GATGTAATAA 136104 |||||||| | |||||||||| ||| | | || |||||||||| |||||||||| || ||||||| TTAACATAAA TTTAGTGTAT ACTTTTTGAT AGGCTAGTAT TGATTGGTAC GAGGTAATAA 306 CTTAGTCAAA TATAGAATAC GATGCTTAAT ATGAGGTAAG GATAAGGGTT AGGAAAGCAA 136044 |||||||||| ||| |||||| ||||||||| ||||||||| | |||||||| | ||||| CTTAGTCAAA TATCGAATAC AATGCTTAAT ATGAGGTAAT GGTAAGGGTT TATATAGCAA 366 CACACGTAGC CGGACCAAGG TGCGGAGTGA GATTTTCTAG ATGCCGGACC AAGGATTTAG 135984 ||||||||| |||||||||| |||| ||||| ||||||||| |||| |||| |||||| ||| CACACGTAGA CGGACCAAGG TGCGTAGTGA TATTTTCTAG ATGCAAGACC AAGGATATAG 426 AAATACATAA CTTATCACTT TGCATGCAAG ATACTAGGAA AGAATTGTTA TAGTTAGAAT 135924 |||||||||| ||||| |||| || ||||||| |||||||||| |||||||||| |||||||||| AAATACATAA CTTATTACTT TGTATGCAAG ATACTAGGAA AGAATTGTTA TAGTTAGAAT 486 TATCAAGTTA TAAACCTGTG GGGAACACGT AAACCCTAGT TACTTTGATT ACTTGACTAA 135864 ||| || ||| ||| |||| | |||||| | |||||||||| || || ||| | |||| ||| TATTAAATTA GGAACTTGTG GAGAACACTT AAACCCTAGT TAATTATATT ATTTGATTAA 546 AACTCAACAT TAAAAGCTGT TAAGTGTCTC TTTCAAGTTC GTTAGTTATT TTTGCTCATT 135804 | |||||| | || ||| || || || || || || | ||| |||| | ||||| ATTCCAACAT TTGAATTTGT TAGTTGCCTA CTTAAATTTA GCTAGCTATT TCCATTCATT 606 AGGAAATACA AACCCCCCTT TT 135782 ||| || | |||||||||| || TAGAACTA-A AACCCCCCTT TT 627 hqPGS_C04HBa0031H05.1-_SGN-E241731- (136403 135782) ******************************************************************************** EST sequence 30 -strand 574 n (File: SGN-E550629-) 1 GGAACGAAGA CCCTCGACGG ACCGTTGTGC CTACGACGGT CCGTCATACA TGCCGTCGAG 61 GGTAATGAAG AGAGCAGCAA AAGAAATTGC ATAAGTATGG GACAACGGAG TCCATGACGG 121 TCTGTCGTGA CCACGACGAT CCGTCGTGAG GTCCGTCGAC CCAGCCGCGT TTTGGCAGAT 181 TTCCAGCAAA TATAGTCCTT GTTTAATTAG GTTTTTATTT TCTATAAATA GTTCTAAAAA 241 CATCATTTTT GAGGTAAGAC TCTGGATCAT TGTTAGACTC CGTATTGTTA GACATCGTAT 301 AAGAAAACAT TTTATTGTTA GACTTTTGAT TATCATTAAT TGTTGGTGAT TTTTTGTGAT 361 AAATCAAGAA AACTCTCAGA TTTTACTCTT TCTCTTTGAA TTAAGTACAT GAATTCTTAT 421 ATGATATATT TGAATATTGT GATTATGACT ATGGTTAACT AAACTCCATA ACTAGGATTG 481 TGGGAACCAT AGGAGAATAT TGAGGTAAAA CCTAACTAAA ATAACAATTC TAGAATAGTG 541 TCTTGCATGT ATTAATAATT CTTTGGCTCA AAAG Predicted gene structure (within gDNA segment 138754 to 135556): Exon 1 136802 136246 ( 557 n); cDNA 2 574 ( 573 n); score: 0.770 MATCH C04HBa0031H05.1- SGN-E550629- 0.770 557 0.970 C PGS_C04HBa0031H05.1-_SGN-E550629- (136802 136246) Alignment (genomic DNA sequence = upper lines): GAAACGAGAC CCTCGACGGA CCGTTGTGCT TATGACAGTC CGTCACACTT GCCGTCGAGG 136743 ||| |||| |||||||||| ||||||||| || ||| ||| ||||| || | |||||||||| GAACGAAGAC CCTCGACGGA CCGTTGTGCC TACGACGGTC CGTCATACAT GCCGTCGAGG 61 GGAATGAAGA AAGCAGCAGA AG-AATTGCA CCAAGTATGG GACGACGGAG TCCACGACGG 136684 | |||||||| ||||||| | || ||||||| |||||||| ||| |||||| |||| ||||| GTAATGAAGA GAGCAGCAAA AGAAATTGCA -TAAGTATGG GACAACGGAG TCCATGACGG 120 TCTGTCATGA CCACGACGGT CCGTCGCATG GTCCGTCGAC CCAGCCGCGT TTTGGCAGAT 136624 |||||| ||| |||||||| | |||||| | |||||||||| |||||||||| |||||||||| TCTGTCGTGA CCACGACGAT CCGTCGTGAG GTCCGTCGAC CCAGCCGCGT TTTGGCAGAT 180 TTCCAGTAAT TAGAATCCTT ATTTAATTAG GTTTTTATTT TTTTATAAAT AGTTCAAAAA 136564 |||||| || || | ||||| ||||||||| ||||||| || || ||||||| ||||| |||| TTCCAGCAAA TATAGTCCTT GTTTAATTAG GTTTTTA-TT TTCTATAAAT AGTTCTAAAA 239 ACCTCGTTTT TGAGGTTAGA CTC-GG-TGA -TATTAAACC TTATATTGCT AGAC-TTGTG 136508 || || |||| |||||| ||| ||| || | | | ||| || ||||| | |||| | || ACATCATTTT TGAGGTAAGA CTCTGGATCA TTGTTAGACT CCGTATTGTT AGACATCGTA 299 TTTG-GAGTG TTTGATTGTT AGA-----GA -T-TC-TT-A ---CAAGTGA TTTTTGGTGA 136461 | | | ||| |||||| ||| || | || || | |||| ||||| |||| TAAGAAAACA TTTTATTGTT AGACTTTTGA TTATCATTAA TTGTTGGTGA TTTTTTGTGA 359 TTAATCAAGC AAATTTTCGG ACTTTATTCT TTCTCATTGA AGTAAGTACA TGAATTCTTG 136401 | ||||||| ||| | || | | |||| ||| ||||| |||| | |||||||| ||||||||| TAAATCAAGA AAACTCTCAG ATTTTACTCT TTCTCTTTGA ATTAAGTACA TGAATTCTTA 419 TTTACCATAT TTGAATATTG TGTTTATGGC TATGAGGAAC TAAACTCCAT ATCTAGGGTT 136341 | | |||| |||||||||| || ||||| | |||| ||| |||||||||| | ||||| || TATGATATAT TTGAATATTG TGATTATGAC TATGGTTAAC TAAACTCCAT AACTAGGATT 479 GTGGGAACCA TAGGCAAATA ATGAGATAAA CCCTAGCTAA AATAACAATT CTAGAATCGT 136281 |||||||||| |||| |||| |||| |||| |||| |||| |||||||||| ||||||| || GTGGGAACCA TAGGAGAATA TTGAGGTAAA ACCTAACTAA AATAACAATT CTAGAATAGT 539 GTCTTGCATG TATTAATAAT TCTTTCGCTT AGAAG 136246 |||||||||| |||||||||| ||||| ||| | ||| GTCTTGCATG TATTAATAAT TCTTTGGCTC AAAAG 574 hqPGS_C04HBa0031H05.1-_SGN-E550629- (136802 136246) ******************************************************************************** EST sequence 32 -strand 574 n (File: SGN-E550645-) 1 GGAACGAAGA CCCTCGTCGG ACCGTTGTGC CTACGACGGT CCGTCATACA TGCCGTCGAG 61 GGTAATGAAG AGAGCAGCAA AAGAAATTGC ATAAGTATGG GACAACGGAG TCCATGACGG 121 TCTGTCGTGA CCACGACGAT CCGTCGTGAG GTCCGTCGAC CCAGCCGCGT TTTGGCAGAT 181 TTCCAGCAAA TATAGTCCTT GTTTAATTAG GTTTTTATTT TCTATAAATA GTTCTAAAAA 241 CATCATTTTT GAGGTAAGAC TCTGGATCAT TGTTAGACTC CGTATTGTTA GACATCGTAT 301 AAGAAAACAT TTTATTGTTA GACTTTTGAT TATCATTAAT TGTTGGTGAT TTTTTGTGAT 361 AAATCAAGAA AACTCTCAGA TTTTACTCTT TCTCTTTGAA TTAAGTACAT GAATTCTTAT 421 ATGATATATT TGAATATTGT GATTATGACT ATGGTTAACT AAACTCCATA ACTAGGATTG 481 TGGGAACCAT AGGAGAATAT TGAGGTAAAA CCTAACTAAA ATAACAATTC TAGAATAGTG 541 TCTTGCATGT ATTAATAATT CTTTGGCTCA AAAG Predicted gene structure (within gDNA segment 138754 to 135556): Exon 1 136802 136246 ( 557 n); cDNA 2 574 ( 573 n); score: 0.768 MATCH C04HBa0031H05.1- SGN-E550645- 0.768 557 0.970 C PGS_C04HBa0031H05.1-_SGN-E550645- (136802 136246) Alignment (genomic DNA sequence = upper lines): GAAACGAGAC CCTCGACGGA CCGTTGTGCT TATGACAGTC CGTCACACTT GCCGTCGAGG 136743 ||| |||| ||||| |||| ||||||||| || ||| ||| ||||| || | |||||||||| GAACGAAGAC CCTCGTCGGA CCGTTGTGCC TACGACGGTC CGTCATACAT GCCGTCGAGG 61 GGAATGAAGA AAGCAGCAGA AG-AATTGCA CCAAGTATGG GACGACGGAG TCCACGACGG 136684 | |||||||| ||||||| | || ||||||| |||||||| ||| |||||| |||| ||||| GTAATGAAGA GAGCAGCAAA AGAAATTGCA -TAAGTATGG GACAACGGAG TCCATGACGG 120 TCTGTCATGA CCACGACGGT CCGTCGCATG GTCCGTCGAC CCAGCCGCGT TTTGGCAGAT 136624 |||||| ||| |||||||| | |||||| | |||||||||| |||||||||| |||||||||| TCTGTCGTGA CCACGACGAT CCGTCGTGAG GTCCGTCGAC CCAGCCGCGT TTTGGCAGAT 180 TTCCAGTAAT TAGAATCCTT ATTTAATTAG GTTTTTATTT TTTTATAAAT AGTTCAAAAA 136564 |||||| || || | ||||| ||||||||| ||||||| || || ||||||| ||||| |||| TTCCAGCAAA TATAGTCCTT GTTTAATTAG GTTTTTA-TT TTCTATAAAT AGTTCTAAAA 239 ACCTCGTTTT TGAGGTTAGA CTC-GG-TGA -TATTAAACC TTATATTGCT AGAC-TTGTG 136508 || || |||| |||||| ||| ||| || | | | ||| || ||||| | |||| | || ACATCATTTT TGAGGTAAGA CTCTGGATCA TTGTTAGACT CCGTATTGTT AGACATCGTA 299 TTTG-GAGTG TTTGATTGTT AGA-----GA -T-TC-TT-A ---CAAGTGA TTTTTGGTGA 136461 | | | ||| |||||| ||| || | || || | |||| ||||| |||| TAAGAAAACA TTTTATTGTT AGACTTTTGA TTATCATTAA TTGTTGGTGA TTTTTTGTGA 359 TTAATCAAGC AAATTTTCGG ACTTTATTCT TTCTCATTGA AGTAAGTACA TGAATTCTTG 136401 | ||||||| ||| | || | | |||| ||| ||||| |||| | |||||||| ||||||||| TAAATCAAGA AAACTCTCAG ATTTTACTCT TTCTCTTTGA ATTAAGTACA TGAATTCTTA 419 TTTACCATAT TTGAATATTG TGTTTATGGC TATGAGGAAC TAAACTCCAT ATCTAGGGTT 136341 | | |||| |||||||||| || ||||| | |||| ||| |||||||||| | ||||| || TATGATATAT TTGAATATTG TGATTATGAC TATGGTTAAC TAAACTCCAT AACTAGGATT 479 GTGGGAACCA TAGGCAAATA ATGAGATAAA CCCTAGCTAA AATAACAATT CTAGAATCGT 136281 |||||||||| |||| |||| |||| |||| |||| |||| |||||||||| ||||||| || GTGGGAACCA TAGGAGAATA TTGAGGTAAA ACCTAACTAA AATAACAATT CTAGAATAGT 539 GTCTTGCATG TATTAATAAT TCTTTCGCTT AGAAG 136246 |||||||||| |||||||||| ||||| ||| | ||| GTCTTGCATG TATTAATAAT TCTTTGGCTC AAAAG 574 hqPGS_C04HBa0031H05.1-_SGN-E550645- (136802 136246) ******************************************************************************** EST sequence 53 -strand 385 n (File: SGN-E273427-) 1 AATATAGTCC TTGTTTAATT AGGTTTTTAT TTTCTATAAA TAGTTCTAAA AACATCATTT 61 TTGAGGTAAG ACTCTGGATC ATTGTTAGAC TCCGTATTGT TAGACATCGT ATAAGAAAAC 121 ATTTTATTGT TAGACTTTTG ATTATCATTA ATTGTTGGTG ATTTTTTGTG ATAAATCAAG 181 AAAACTCTCA GATTTTACTC TTTCTCTTTG AATTAAGTAC ATGAATTCTT ATATGATATA 241 TTTGAATATT GTGATTATGA CTATGGTTAA CTAAACTCCA TAACTAGGAT TGTGGGAACC 301 ATAGGAGAAT ATTGAGGTAA AACCTAACTA AAATAACAAT TCTAGAATAG TGTCTTGCAT 361 GTATTAATAA TTCTTTGGCT CAAAA Predicted gene structure (within gDNA segment 139158 to 135566): Exon 1 136549 136247 ( 303 n); cDNA 84 385 ( 302 n); score: 0.779 MATCH C04HBa0031H05.1- SGN-E273427- 0.779 303 0.787 C PGS_C04HBa0031H05.1-_SGN-E273427- (136549 136247) Alignment (genomic DNA sequence = upper lines): GTTAGACTCG GTGATATTAA ACCTTATATT GCTAGACTTG TGTTTG-GAG TG-TTTGATT 136492 ||||||||| || | ||| || | ||| | || | | ||| || ||||||| GTTAGACTCC GTATTGTTAG ACATCGTATA AGAAAACATT TTATTGTTAG ACTTTTGATT 143 GTTAGAGATT CTTACAAGTG ATTTTTGGTG ATTAATCAAG CAAATTTTCG GACTTTATTC 136432 | | ||| || ||| |||||| ||| || ||||||| ||| | || || |||| || ATCATTAATT GTT---GGTG ATTTTTTGTG ATAAATCAAG AAAACTCTCA GATTTTACTC 200 TTTCTCATTG AAGTAAGTAC ATGAATTCTT GTTTACCATA TTTGAATATT GTGTTTATGG 136372 |||||| ||| || ||||||| |||||||||| | | ||| |||||||||| ||| ||||| TTTCTCTTTG AATTAAGTAC ATGAATTCTT ATATGATATA TTTGAATATT GTGATTATGA 260 CTATGAGGAA CTAAACTCCA TATCTAGGGT TGTGGGAACC ATAGGCAAAT AATGAGATAA 136312 ||||| || |||||||||| || ||||| | |||||||||| ||||| ||| | |||| ||| CTATGGTTAA CTAAACTCCA TAACTAGGAT TGTGGGAACC ATAGGAGAAT ATTGAGGTAA 320 ACCCTAGCTA AAATAACAAT TCTAGAATCG TGTCTTGCAT GTATTAATAA TTCTTTCGCT 136252 | |||| ||| |||||||||| |||||||| | |||||||||| |||||||||| |||||| ||| AACCTAACTA AAATAACAAT TCTAGAATAG TGTCTTGCAT GTATTAATAA TTCTTTGGCT 380 TAGAA 136247 | || CAAAA 385 hqPGS_C04HBa0031H05.1-_SGN-E273427- (136549 136247) ******************************************************************************** EST sequence 64 -strand 737 n (File: SGN-E369290-) 1 GTCATGTTCT CAATGTTTTC GACGCCAAGC ATCTCCATTC AGTAGTAAGC GATTTACTTT 61 TTAAGGAAAT CTGTCCAAAG ATGAATGCGG AGATTTTGAG TGAAGAAATG CAGAATAGAC 121 GACCTACAGA GCTTATGACG GTCCGTCGTG CTTGTGACGG TCTGTAGGTG GCAGCGTAGT 181 GCAGCTGCTG AAAGAAGATG GGGAAGTCTG ACCAAGTGCG GGGCTACGGA GTTCATGACG 241 GTCCGTCCTG CAGGTTCGTC ATGAAGTTCA GAGAAGTAGT CCCAGTACCC ATATTCCAAG 301 AGTTCAAGTG TGTTGAAACG AAGACCCTCG ATAGACCGTT GTGCCTATGA CGGTCCGTCA 361 TACCTGCCGT CGAGGGTAAT GAAGAGAGAA GCAAAAGAAA TTGCATAAGT ATGGGACGAC 421 AGAGTCCATG ACGGTCCATC GTGACCATGA CGATCCGTCG TGAGTTCTGT CGACCCAGCC 481 GCGTTTTGGC AGATTTCCAG CAAATAGAGT CCTTGTTTAG TTAGGTTTTT ATTTTCTATA 541 AATAGTTCGA AAAACCTCGT TTTTGAGGTT ATACTCCGTA TTGTTAGACA TCATATTAGT 601 AGACACTGTA TTGTTAGACT TTTGAGAATC ATTACACTTT TTGTGAGATT GTTGATTACT 661 TTAAGATTCT TGCAAGTGAT TATTGGTGAT TAATCAAGCA AACTTTTGGA TTTTAAAAAA 721 AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 138292 to 133648): Exon 1 137050 136502 ( 549 n); cDNA 66 614 ( 549 n); score: 0.770 Intron 1 136501 135669 ( 833 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0) Exon 2 135668 135655 ( 14 n); cDNA 615 628 ( 14 n); score: 0.714 Intron 2 135654 134979 ( 676 n); Pd: 0.742 (s: 0), Pa: 0.593 (s: 0) Exon 3 134978 134950 ( 29 n); cDNA 629 656 ( 28 n); score: 0.586 PPA cDNA 715 737 MATCH C04HBa0031H05.1- SGN-E369290- 0.770 592 0.803 C PGS_C04HBa0031H05.1-_SGN-E369290- (137050 136502,135668 135655,134978 134950) Alignment (genomic DNA sequence = upper lines): GAAATCTGTC CAAAGCTGAA TGCGGAGATT TTGAGCGAA- AAATGCAGAA GAGACCACCT 136992 |||||||||| ||||| |||| |||||||||| ||||| ||| |||||||||| |||| |||| GAAATCTGTC CAAAGATGAA TGCGGAGATT TTGAGTGAAG AAATGCAGAA TAGACGACCT 125 ACGGAGCTTA TGACGGTCCG TAG-G-TGGC AGCGTAGAGA AGCTGCTGAA GGAAGATGGG 136934 || ||||||| |||||||||| | | | | | || | || || | | || || ACAGAGCTTA TGACGGTCCG TCGTGCTTGT GACGGTCTGT AGGTG-GCAG CGTAG-TGCA 183 GAAGCCTGAC CAAG-TGTGG GATTAAGAAG CTTGTGACGG TCCGTCATGG CT-ATGATGG 136876 | || | ||| || || | | | | | ||| ||| | | | | |||| || GCTGCTGAAA GAAGATGGGG AAGTCTG-AC CAAGTG-CGG GGCTACGGAG TTCATGACGG 241 TCCGTCCTGC AGGTTCGTCG TGAAGATTAG AGAAGTGATC CTAGTACCCA GATTCCAAGA 136816 |||||||||| ||||||||| ||||| | || |||||| || | |||||||| ||||||||| TCCGTCCTGC AGGTTCGTCA TGAAGTTCAG AGAAGTAGTC CCAGTACCCA TATTCCAAGA 301 GTTGAAGTAT TTTGAAACG- AGACCCTCGA CGGACCGTTG TGCTTATGAC AGTCCGTCAC 136757 ||| |||| | |||||||| |||||||||| |||||||| ||| |||||| |||||||| GTTCAAGTGT GTTGAAACGA AGACCCTCGA TAGACCGTTG TGCCTATGAC GGTCCGTCAT 361 ACTTGCCGTC GAGGGGAATG AAGAAAGCAG CAGAAG-AAT TGCACCAAGT ATGGGACGAC 136698 || ||||||| ||||| |||| |||| || || || ||| ||| |||| |||| |||||||||| ACCTGCCGTC GAGGGTAATG AAGAGAGAAG CAAAAGAAAT TGCA-TAAGT ATGGGACGAC 420 GGAGTCCACG ACGGTCTGTC ATGACCACGA CGGTCCGTCG CATGGTCCGT CGACCCAGCC 136638 ||||||| | |||||| || |||||| || || ||||||| | || || |||||||||| AGAGTCCATG ACGGTCCATC GTGACCATGA CGATCCGTCG TGAGTTCTGT CGACCCAGCC 480 GCGTTTTGGC AGATTTCCAG TAATTAGAAT CCTTATTTAA TTAGGTTTTT ATTTTTTTAT 136578 |||||||||| |||||||||| || |||| | |||| |||| |||||||||| | |||| ||| GCGTTTTGGC AGATTTCCAG CAAATAGAGT CCTTGTTTAG TTAGGTTTTT A-TTTTCTAT 539 AAATAGTTCA AAAAACCTCG TTTTTGAGGT TAGACTCGGT GATATTAAAC CTTATATTGC 136518 ||||||||| |||||||||| |||||||||| || |||| || | ||| || | ||||| AAATAGTTCG AAAAACCTCG TTTTTGAGGT TATACTCCGT ATTGTTAGAC ATCATATTAG 599 TAGACTTGTG TTTGGAGTGT TTGATTGTTA GAGATTCTTA CAAGTGATTT TTGGTGATTA 136458 ||||| || | | | TAGAC-ACTG TATTGT.... .......... .......... .......... .......... 614 ATCAAGCAAA TTTTCGGACT TTATTCTTTC TCATTGAAGT AAGTACATGA ATTCTTGTTT 136398 .......... .......... .......... .......... .......... .......... 614 ACCATATTTG AATATTGTGT TTATGGCTAT GAGGAACTAA ACTCCATATC TAGGGTTGTG 136338 .......... .......... .......... .......... .......... .......... 614 GGAACCATAG GCAAATAATG AGATAAACCC TAGCTAAAAT AACAATTCTA GAATCGTGTC 136278 .......... .......... .......... .......... .......... .......... 614 TTGCATGTAT TAATAATTCT TTCGCTTAGA AGTCTTTTTA ACGGATGATC AACGTTAGAA 136218 .......... .......... .......... .......... .......... .......... 614 CTCGCCTTAA TGCTACTTGC CGGACCAAGG AGGTAGATAA TAGGAAAAGA ATTATTAACA 136158 .......... .......... .......... .......... .......... .......... 614 TAGATTTAGT GTATACTATC TAATAGGCTA GTATTGATTG GTACGATGTA ATAACTTAGT 136098 .......... .......... .......... .......... .......... .......... 614 CAAATATAGA ATACGATGCT TAATATGAGG TAAGGATAAG GGTTAGGAAA GCAACACACG 136038 .......... .......... .......... .......... .......... .......... 614 TAGCCGGACC AAGGTGCGGA GTGAGATTTT CTAGATGCCG GACCAAGGAT TTAGAAATAC 135978 .......... .......... .......... .......... .......... .......... 614 ATAACTTATC ACTTTGCATG CAAGATACTA GGAAAGAATT GTTATAGTTA GAATTATCAA 135918 .......... .......... .......... .......... .......... .......... 614 GTTATAAACC TGTGGGGAAC ACGTAAACCC TAGTTACTTT GATTACTTGA CTAAAACTCA 135858 .......... .......... .......... .......... .......... .......... 614 ACATTAAAAG CTGTTAAGTG TCTCTTTCAA GTTCGTTAGT TATTTTTGCT CATTAGGAAA 135798 .......... .......... .......... .......... .......... .......... 614 TACAAACCCC CCTTTTATGA TTTTTACTTT CTAAGTAATA ACAAGTTGAA GTTAAGTCTA 135738 .......... .......... .......... .......... .......... .......... 614 GACTATTTTC CTCGTGGGAA CGATCCCAAC CTCACTAGTT GGGTTATTTA CTTGACGCGA 135678 .......... .......... .......... .......... .......... .......... 614 CCGCTTTACT TCTCATTTGA GAAGTAAGTT TGAGCGTATC AAGTACACAC TTGTACTAAG 135618 | | ||||| ||| .........T AGACTTTTGA GAA....... .......... .......... .......... 628 TATGGGTATA TGAAAGCACA CAGCAAGGAC AAGCATGATT AAGAATAGCT CTTTCCTAAC 135558 .......... .......... .......... .......... .......... .......... 628 AACGTGATTA TGGAAAGTCA AGTCAGTGGA CTTGCCAAAT TGGGAGTAAG AAAGTTAGTG 135498 .......... .......... .......... .......... .......... .......... 628 AGCTTTCCAA ATTTGGATTG GGAAAGTGAG TGAACCTTCC AAATTTTGGA TTAGGAAAGT 135438 .......... .......... .......... .......... .......... .......... 628 CATGCCATGA GAGCAACATG CATCATCATA CTAATCATAT TGCACACAGC ACATAACATC 135378 .......... .......... .......... .......... .......... .......... 628 TTGAACATAG CACATGACAT ATTGCATATA GCACATAACA CTTTTCATGT CCTTCATTCA 135318 .......... .......... .......... .......... .......... .......... 628 TATGCCATGA GATCTTTGAA TCATGGACTT GACATCAGGA CTTCCCAAAG TGAGGGCTCA 135258 .......... .......... .......... .......... .......... .......... 628 ACATATGGGA CCTCAACTAG GGAGCCTTCT TTATCAAACA CAGAGTCTGT TTCATTCACT 135198 .......... .......... .......... .......... .......... .......... 628 CATACGTACT TTATTTCATT TCTTTCATAG GCTAGTTTAA ACACCATCTA TACCTAGGAT 135138 .......... .......... .......... .......... .......... .......... 628 GTAGTTTAAG ACTTCCATCG CGTTCGCTGT GCAATGATCA AGAATGACCT AGTGTCATTA 135078 .......... .......... .......... .......... .......... .......... 628 CTTAAGTCTA GCTCACCTCC TTATCATCCT ATCCTAACAC CTTTGGTATC ATCATTTCAT 135018 .......... .......... .......... .......... .......... .......... 628 TATATGCATT ATTTGAAGCT GGACTCATTC ATTCATTAGG AACTTTAACT TTAACTGACA 134958 | || ||| || ||| | .......... .......... .......... .........T CA-TTACACT TTTTGTGAGA 648 TAGATCAT 134950 | | | || TTGTTGAT 656 hqPGS_C04HBa0031H05.1-_SGN-E369290- (137050 136502) ******************************************************************************** EST sequence 95 +strand 787 n (File: SGN-E369291+) 1 TATGGACGTA TGGTGCAAGG TTTATCTCAC GAAAAAGATA TACTGGTGGT CATGTTCTCA 61 ATGTTTTCGA CGCCAAGCAT CTCCATTCAG TAGTAAGCGA TTTACTTTTT AAGGAAATCT 121 GTCCAAAGAT GAATGCGGAG ATTTTGAGTG AAGAAATGCA GAATAGACGA CCTACAGAGC 181 TTATGACGGT CCGTCGTGCT TGTGACGGTC TGTAGGTGGC AGCGTAGTGC AGCTGCTGAA 241 AGAAGATGGG GAAGTCTGAC CAAGTGCGGG GCTACGGAGT TCATGACGGT CCGTCCTGCA 301 GGTTCGTCAT GAAGTTCAGA GAAGTAGTCC CAGTACCCAT ATTCCAAGAG TTCAAGTGTG 361 TTGAAACGAA GACCCTCGAT AGACCGTTGT GCCTATGACG GTCCGTCATA CCTGCCGTCG 421 AGGGTAATGA AGAGAGAAGC AAAAGAAATT GCATAAGTAT GGGACGACAG AGTCCATGAC 481 GGTCCATCGT GACCATGACG ATCCGTCGTG AGTTCTGTCG ACCCAGCCGC GTTTTGGCAG 541 ATTTCCAGCA AATAGAGTCC TTGTTTAGTT AGGTTTTTAT TTTCTATAAA TAGTTCGAAA 601 AACCTCGTTT TTGAGGTTAT ACTCCGTATT GTTAGACATC ATATTAGTAG ACACTGTATT 661 GTTAGACTTT TGAGAATCAT TACACTTTTT GTGAGATTGT TGATTACTTT AAGATTCTTT 721 GCAGTGATTA TTGGTGATTA ATCAACCAAA CTTTTTGAAT TTTAAAAAAA AAAAAAAAAA 781 AAAAAAA Predicted gene structure (within gDNA segment 138762 to 133618): Exon 1 137050 136502 ( 549 n); cDNA 114 662 ( 549 n); score: 0.770 Intron 1 136501 135669 ( 833 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0) Exon 2 135668 135655 ( 14 n); cDNA 663 676 ( 14 n); score: 0.714 Intron 2 135654 134979 ( 676 n); Pd: 0.742 (s: 0), Pa: 0.593 (s: 0) Exon 3 134978 134950 ( 29 n); cDNA 677 704 ( 28 n); score: 0.586 PPA cDNA 764 787 MATCH C04HBa0031H05.1- SGN-E369291+ 0.770 592 0.752 C PGS_C04HBa0031H05.1-_SGN-E369291+ (137050 136502,135668 135655,134978 134950) Alignment (genomic DNA sequence = upper lines): GAAATCTGTC CAAAGCTGAA TGCGGAGATT TTGAGCGAA- AAATGCAGAA GAGACCACCT 136992 |||||||||| ||||| |||| |||||||||| ||||| ||| |||||||||| |||| |||| GAAATCTGTC CAAAGATGAA TGCGGAGATT TTGAGTGAAG AAATGCAGAA TAGACGACCT 173 ACGGAGCTTA TGACGGTCCG TAG-G-TGGC AGCGTAGAGA AGCTGCTGAA GGAAGATGGG 136934 || ||||||| |||||||||| | | | | | || | || || | | || || ACAGAGCTTA TGACGGTCCG TCGTGCTTGT GACGGTCTGT AGGTG-GCAG CGTAG-TGCA 231 GAAGCCTGAC CAAG-TGTGG GATTAAGAAG CTTGTGACGG TCCGTCATGG CT-ATGATGG 136876 | || | ||| || || | | | | | ||| ||| | | | | |||| || GCTGCTGAAA GAAGATGGGG AAGTCTG-AC CAAGTG-CGG GGCTACGGAG TTCATGACGG 289 TCCGTCCTGC AGGTTCGTCG TGAAGATTAG AGAAGTGATC CTAGTACCCA GATTCCAAGA 136816 |||||||||| ||||||||| ||||| | || |||||| || | |||||||| ||||||||| TCCGTCCTGC AGGTTCGTCA TGAAGTTCAG AGAAGTAGTC CCAGTACCCA TATTCCAAGA 349 GTTGAAGTAT TTTGAAACG- AGACCCTCGA CGGACCGTTG TGCTTATGAC AGTCCGTCAC 136757 ||| |||| | |||||||| |||||||||| |||||||| ||| |||||| |||||||| GTTCAAGTGT GTTGAAACGA AGACCCTCGA TAGACCGTTG TGCCTATGAC GGTCCGTCAT 409 ACTTGCCGTC GAGGGGAATG AAGAAAGCAG CAGAAG-AAT TGCACCAAGT ATGGGACGAC 136698 || ||||||| ||||| |||| |||| || || || ||| ||| |||| |||| |||||||||| ACCTGCCGTC GAGGGTAATG AAGAGAGAAG CAAAAGAAAT TGCA-TAAGT ATGGGACGAC 468 GGAGTCCACG ACGGTCTGTC ATGACCACGA CGGTCCGTCG CATGGTCCGT CGACCCAGCC 136638 ||||||| | |||||| || |||||| || || ||||||| | || || |||||||||| AGAGTCCATG ACGGTCCATC GTGACCATGA CGATCCGTCG TGAGTTCTGT CGACCCAGCC 528 GCGTTTTGGC AGATTTCCAG TAATTAGAAT CCTTATTTAA TTAGGTTTTT ATTTTTTTAT 136578 |||||||||| |||||||||| || |||| | |||| |||| |||||||||| | |||| ||| GCGTTTTGGC AGATTTCCAG CAAATAGAGT CCTTGTTTAG TTAGGTTTTT A-TTTTCTAT 587 AAATAGTTCA AAAAACCTCG TTTTTGAGGT TAGACTCGGT GATATTAAAC CTTATATTGC 136518 ||||||||| |||||||||| |||||||||| || |||| || | ||| || | ||||| AAATAGTTCG AAAAACCTCG TTTTTGAGGT TATACTCCGT ATTGTTAGAC ATCATATTAG 647 TAGACTTGTG TTTGGAGTGT TTGATTGTTA GAGATTCTTA CAAGTGATTT TTGGTGATTA 136458 ||||| || | | | TAGAC-ACTG TATTGT.... .......... .......... .......... .......... 662 ATCAAGCAAA TTTTCGGACT TTATTCTTTC TCATTGAAGT AAGTACATGA ATTCTTGTTT 136398 .......... .......... .......... .......... .......... .......... 662 ACCATATTTG AATATTGTGT TTATGGCTAT GAGGAACTAA ACTCCATATC TAGGGTTGTG 136338 .......... .......... .......... .......... .......... .......... 662 GGAACCATAG GCAAATAATG AGATAAACCC TAGCTAAAAT AACAATTCTA GAATCGTGTC 136278 .......... .......... .......... .......... .......... .......... 662 TTGCATGTAT TAATAATTCT TTCGCTTAGA AGTCTTTTTA ACGGATGATC AACGTTAGAA 136218 .......... .......... .......... .......... .......... .......... 662 CTCGCCTTAA TGCTACTTGC CGGACCAAGG AGGTAGATAA TAGGAAAAGA ATTATTAACA 136158 .......... .......... .......... .......... .......... .......... 662 TAGATTTAGT GTATACTATC TAATAGGCTA GTATTGATTG GTACGATGTA ATAACTTAGT 136098 .......... .......... .......... .......... .......... .......... 662 CAAATATAGA ATACGATGCT TAATATGAGG TAAGGATAAG GGTTAGGAAA GCAACACACG 136038 .......... .......... .......... .......... .......... .......... 662 TAGCCGGACC AAGGTGCGGA GTGAGATTTT CTAGATGCCG GACCAAGGAT TTAGAAATAC 135978 .......... .......... .......... .......... .......... .......... 662 ATAACTTATC ACTTTGCATG CAAGATACTA GGAAAGAATT GTTATAGTTA GAATTATCAA 135918 .......... .......... .......... .......... .......... .......... 662 GTTATAAACC TGTGGGGAAC ACGTAAACCC TAGTTACTTT GATTACTTGA CTAAAACTCA 135858 .......... .......... .......... .......... .......... .......... 662 ACATTAAAAG CTGTTAAGTG TCTCTTTCAA GTTCGTTAGT TATTTTTGCT CATTAGGAAA 135798 .......... .......... .......... .......... .......... .......... 662 TACAAACCCC CCTTTTATGA TTTTTACTTT CTAAGTAATA ACAAGTTGAA GTTAAGTCTA 135738 .......... .......... .......... .......... .......... .......... 662 GACTATTTTC CTCGTGGGAA CGATCCCAAC CTCACTAGTT GGGTTATTTA CTTGACGCGA 135678 .......... .......... .......... .......... .......... .......... 662 CCGCTTTACT TCTCATTTGA GAAGTAAGTT TGAGCGTATC AAGTACACAC TTGTACTAAG 135618 | | ||||| ||| .........T AGACTTTTGA GAA....... .......... .......... .......... 676 TATGGGTATA TGAAAGCACA CAGCAAGGAC AAGCATGATT AAGAATAGCT CTTTCCTAAC 135558 .......... .......... .......... .......... .......... .......... 676 AACGTGATTA TGGAAAGTCA AGTCAGTGGA CTTGCCAAAT TGGGAGTAAG AAAGTTAGTG 135498 .......... .......... .......... .......... .......... .......... 676 AGCTTTCCAA ATTTGGATTG GGAAAGTGAG TGAACCTTCC AAATTTTGGA TTAGGAAAGT 135438 .......... .......... .......... .......... .......... .......... 676 CATGCCATGA GAGCAACATG CATCATCATA CTAATCATAT TGCACACAGC ACATAACATC 135378 .......... .......... .......... .......... .......... .......... 676 TTGAACATAG CACATGACAT ATTGCATATA GCACATAACA CTTTTCATGT CCTTCATTCA 135318 .......... .......... .......... .......... .......... .......... 676 TATGCCATGA GATCTTTGAA TCATGGACTT GACATCAGGA CTTCCCAAAG TGAGGGCTCA 135258 .......... .......... .......... .......... .......... .......... 676 ACATATGGGA CCTCAACTAG GGAGCCTTCT TTATCAAACA CAGAGTCTGT TTCATTCACT 135198 .......... .......... .......... .......... .......... .......... 676 CATACGTACT TTATTTCATT TCTTTCATAG GCTAGTTTAA ACACCATCTA TACCTAGGAT 135138 .......... .......... .......... .......... .......... .......... 676 GTAGTTTAAG ACTTCCATCG CGTTCGCTGT GCAATGATCA AGAATGACCT AGTGTCATTA 135078 .......... .......... .......... .......... .......... .......... 676 CTTAAGTCTA GCTCACCTCC TTATCATCCT ATCCTAACAC CTTTGGTATC ATCATTTCAT 135018 .......... .......... .......... .......... .......... .......... 676 TATATGCATT ATTTGAAGCT GGACTCATTC ATTCATTAGG AACTTTAACT TTAACTGACA 134958 | || ||| || ||| | .......... .......... .......... .........T CA-TTACACT TTTTGTGAGA 696 TAGATCAT 134950 | | | || TTGTTGAT 704 hqPGS_C04HBa0031H05.1-_SGN-E369291+ (137050 136502) ******************************************************************************** EST sequence 67 +strand 731 n (File: SGN-E261921+) 1 TATGGACGTA TGGTGCAAGG TTTATCTCAC GAAAAAGATA TACTGGTGGT CATGTTCTCA 61 ATGTTTTCGA CGCCAAGCAT CTCCATTCAG TAGTAAGCGA TTTACTTTTT AAGGAAATCT 121 GTCCAAAGAT GAATGCGGAG ATTTTGAGTG AAGAAATGCA GAATAGACGA CCTACAGAGC 181 TTATGACGGT CCGTCGTGCT TGTGACGGTC TGTAGGTGGC AGCGTAGTGC AGCTGCTGAA 241 AGAAGATGGG GAAGTCTGAC CAAGTGCGGG GCTACGGAGT TCATGACGGT CCGTCCTGCA 301 GGTTCGTCAT GAAGTTCAGA GAAGTAGTCC CAGTACCCAT ATTCCAAGAG TTCAAGTGTG 361 TTGAAACGAA GACCCTCGAT AGACCGTTGT GCCTATGACG GTCCGTCATA CCTGCCGTCG 421 AGGGTAATGA AGAGAGAAGC AAAAGAAATT GCATAAGTAT GGGACGACAG AGTCCATGAC 481 GGTCCATCGT GACCATGACG ATCCGTCGTG AGTTCTGTCG ACCCAGCCGC GTTTTGGCAG 541 ATTTCCAGCA AATAGAGTCC TTGTTTAGTT AGGTTTTTAT TTTCTATAAA TAGTTCGAAA 601 AACCTCGTTT TTGAGGTTAT ACTCCGTATT GTTAGACATC ATATTAGTAG ACACTGTATT 661 GTTAGACTTT TGAGAATCAT TACACTTTTT GTGAGATTGG TGATTACTTT AAGATCTTTT 721 GCAGTGATAT T Predicted gene structure (within gDNA segment 138762 to 134178): Exon 1 137050 136516 ( 535 n); cDNA 114 649 ( 536 n); score: 0.775 MATCH C04HBa0031H05.1- SGN-E261921+ 0.775 535 0.732 C PGS_C04HBa0031H05.1-_SGN-E261921+ (137050 136516) Alignment (genomic DNA sequence = upper lines): GAAATCTGTC CAAAGCTGAA TGCGGAGATT TTGAGCGAA- AAATGCAGAA GAGACCACCT 136992 |||||||||| ||||| |||| |||||||||| ||||| ||| |||||||||| |||| |||| GAAATCTGTC CAAAGATGAA TGCGGAGATT TTGAGTGAAG AAATGCAGAA TAGACGACCT 173 ACGGAGCTTA TGACGGTCCG TAG-G-TGGC AGCGTAGAGA AGCTGCTGAA GGAAGATGGG 136934 || ||||||| |||||||||| | | | | | || | || || | | || || ACAGAGCTTA TGACGGTCCG TCGTGCTTGT GACGGTCTGT AGGTG-GCAG CGTAG-TGCA 231 GAAGCCTGAC CAAG-TGTGG GATTAAGAAG CTTGTGACGG TCCGTCATGG CT-ATGATGG 136876 | || | ||| || || | | | | | ||| ||| | | | | |||| || GCTGCTGAAA GAAGATGGGG AAGTCTG-AC CAAGTG-CGG GGCTACGGAG TTCATGACGG 289 TCCGTCCTGC AGGTTCGTCG TGAAGATTAG AGAAGTGATC CTAGTACCCA GATTCCAAGA 136816 |||||||||| ||||||||| ||||| | || |||||| || | |||||||| ||||||||| TCCGTCCTGC AGGTTCGTCA TGAAGTTCAG AGAAGTAGTC CCAGTACCCA TATTCCAAGA 349 GTTGAAGTAT TTTGAAACG- AGACCCTCGA CGGACCGTTG TGCTTATGAC AGTCCGTCAC 136757 ||| |||| | |||||||| |||||||||| |||||||| ||| |||||| |||||||| GTTCAAGTGT GTTGAAACGA AGACCCTCGA TAGACCGTTG TGCCTATGAC GGTCCGTCAT 409 ACTTGCCGTC GAGGGGAATG AAGAAAGCAG CAGAAG-AAT TGCACCAAGT ATGGGACGAC 136698 || ||||||| ||||| |||| |||| || || || ||| ||| |||| |||| |||||||||| ACCTGCCGTC GAGGGTAATG AAGAGAGAAG CAAAAGAAAT TGCA-TAAGT ATGGGACGAC 468 GGAGTCCACG ACGGTCTGTC ATGACCACGA CGGTCCGTCG CATGGTCCGT CGACCCAGCC 136638 ||||||| | |||||| || |||||| || || ||||||| | || || |||||||||| AGAGTCCATG ACGGTCCATC GTGACCATGA CGATCCGTCG TGAGTTCTGT CGACCCAGCC 528 GCGTTTTGGC AGATTTCCAG TAATTAGAAT CCTTATTTAA TTAGGTTTTT ATTTTTTTAT 136578 |||||||||| |||||||||| || |||| | |||| |||| |||||||||| | |||| ||| GCGTTTTGGC AGATTTCCAG CAAATAGAGT CCTTGTTTAG TTAGGTTTTT A-TTTTCTAT 587 AAATAGTTCA AAAAACCTCG TTTTTGAGGT TAGACTCGGT GATATTAAAC CTTATATTGC 136518 ||||||||| |||||||||| |||||||||| || |||| || | ||| || | ||||| AAATAGTTCG AAAAACCTCG TTTTTGAGGT TATACTCCGT ATTGTTAGAC ATCATATTAG 647 TA 136516 || TA 649 hqPGS_C04HBa0031H05.1-_SGN-E261921+ (137050 136516) ******************************************************************************** EST sequence 59 -strand 746 n (File: SGN-E546025-) 1 GAAGACCAGT AACTCAAGCT GAGGCATTCA AGGCAACACA CATAAGAAAG AAGAAAAATN 61 CCGAAGATCC AGACGTGTGG ATTGAGCCGC GAGCTGAAGT GATCATGAAA TTTGTCCAAA 121 GCCAAATGCG GAGATTTTGA GAGAAGAAAT GCAGAAGAGA CCACCTATGG AGCTGATGAC 181 GGTCCGTCGT GCTTGTGACG GTCCGTAGGT GGCAGTGTAG AGAAGTTGCT GAAGGAAGAT 241 GGGGAAGTCT GACCAAGTGT GGGATTACGA AGCTTGTGAC GGTCCGTCAT GGCTATGACG 301 GTCTGTTCTG CAGGTTCGTC GTGGAGTTCA GAGAAGTAAT CCAGTACCTA GATTCCGAGA 361 GTTGAAGTAT TTTGAAACGA AGACCCTTGA CAGACCGTTG TGCCTATGAC AGTCCGTCAT 421 ACTTGCCGTC GAGGGGAATG AAGAGAGCAG CAGAAGAAAG TGCACAAGTA TGGGACGACG 481 GAGTCCATGA CGGTCCGTCA TGACCACGAC GGTCCGTCGC ATGGTCCGTC GACCCAGCCG 541 CGTTTTGGCA GATTTCCACC AATTAGAATT CTTGTGTAAT TAGGTTTTTA TTTTTATATA 601 AATAGTTCGA AAAACCTCAT TTTTGAGGTT AGACACCTGA TAGTTAGACT CTTAGATTGT 661 TAAAACTTCG TATTGGTGAA CATTGTATTG GAAAATTCTT GATAATCATT AGACTTTTCG 721 TGAGATTATT GATTAAAAAA AAAAAA Predicted gene structure (within gDNA segment 138882 to 134472): Exon 1 136985 136516 ( 470 n); cDNA 192 662 ( 471 n); score: 0.898 PPA cDNA 735 746 MATCH C04HBa0031H05.1- SGN-E546025- 0.898 470 0.630 C PGS_C04HBa0031H05.1-_SGN-E546025- (136985 136516) Alignment (genomic DNA sequence = upper lines): CTTATGACGG TCCGTAGGTG GCAGCGTAGA GAAGCTGCTG AAGGAAGATG GGGAAGCCTG 136926 ||| |||||| |||||||||| |||| ||||| |||| ||||| |||||||||| |||||| ||| CTTGTGACGG TCCGTAGGTG GCAGTGTAGA GAAGTTGCTG AAGGAAGATG GGGAAGTCTG 251 ACCAAGTGTG GGATTAAGAA GCTTGTGACG GTCCGTCATG GCTATGATGG TCCGTCCTGC 136866 |||||||||| |||||| ||| |||||||||| |||||||||| ||||||| || || || |||| ACCAAGTGTG GGATTACGAA GCTTGTGACG GTCCGTCATG GCTATGACGG TCTGTTCTGC 311 AGGTTCGTCG TGAAGATTAG AGAAGTGATC CTAGTACCCA GATTCCAAGA GTTGAAGTAT 136806 |||||||||| || || | || |||||| ||| | |||||| | |||||| ||| |||||||||| AGGTTCGTCG TGGAGTTCAG AGAAGTAATC C-AGTACCTA GATTCCGAGA GTTGAAGTAT 370 TTTGAAACG- AGACCCTCGA CGGACCGTTG TGCTTATGAC AGTCCGTCAC ACTTGCCGTC 136747 ||||||||| ||||||| || | |||||||| ||| |||||| ||||||||| |||||||||| TTTGAAACGA AGACCCTTGA CAGACCGTTG TGCCTATGAC AGTCCGTCAT ACTTGCCGTC 430 GAGGGGAATG AAGAAAGCAG CAGAAG-AAT TGCACCAAGT ATGGGACGAC GGAGTCCACG 136688 |||||||||| |||| ||||| |||||| || |||| ||||| |||||||||| |||||||| | GAGGGGAATG AAGAGAGCAG CAGAAGAAAG TGCA-CAAGT ATGGGACGAC GGAGTCCATG 489 ACGGTCTGTC ATGACCACGA CGGTCCGTCG CATGGTCCGT CGACCCAGCC GCGTTTTGGC 136628 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGGTCCGTC ATGACCACGA CGGTCCGTCG CATGGTCCGT CGACCCAGCC GCGTTTTGGC 549 AGATTTCCAG TAATTAGAAT CCTTATTTAA TTAGGTTTTT ATTTTTTTAT AAATAGTTCA 136568 ||||||||| ||||||||| ||| | ||| |||||||||| |||||| ||| ||||||||| AGATTTCCAC CAATTAGAAT TCTTGTGTAA TTAGGTTTTT ATTTTTATAT AAATAGTTCG 609 AAAAACCTCG TTTTTGAGGT TAGACTCGGT GATA-TTAAA C-CTTATATT GCTA 136516 ||||||||| |||||||||| ||||| | | |||| ||| | | |||| ||| | || AAAAACCTCA TTTTTGAGGT TAGACAC-CT GATAGTTAGA CTCTTAGATT GTTA 662 hqPGS_C04HBa0031H05.1-_SGN-E546025- (136985 136516) ******************************************************************************** EST sequence 89 +strand 582 n (File: SGN-E322644+) 1 ATGCTTTGGC TATCTGGTAT GGACGTATGG TGCAAGGTTT ATCTCACGAA AAAGATATAC 61 TGGTGGTCAT GTTCTCAATG TTTTCGACGC CAAGCATCTC CATTCAGTAG TAAGCGATTT 121 ACTTTTTAAG GAAATCTGTC CAAAGATGAA TGCGGAGATT TTGAGTGAAG AAATGCAGAA 181 TAGACGACCT ACAGAGCTTA TGACGGTCCG TCGTGCTTGT GACGGTCTGT AGGTGGCAGC 241 GTAGTGCAGC TGCTGAAAGA AGATGGGGAA GTCTGACCAA GTGCGGGGCT ACGGAGTTCA 301 TGACGGTCCG TCCTGCAGGT TCGTCATGAA GTTCAGAGAA GTAGTCCCAG TACCCATATT 361 CCAAGAGTTC AAGTGTGTTG AAACGAAGAC CCTCGATAGA CCGTTGTGCC TATGACGGTC 421 CGTCATACCT GCCGTCGAGG GTAATGAAGA GAGAAGCAAA AGAAATTGCA TAAGTATGGG 481 ACGACAGAGT CCATGACGGT CCATCGTGAC CATGACGATC CGTCGTGAGT TCTGTCGACC 541 CAGCCGCGTT TTGGCAGATT TCCAGCAAAT AGAGTCCTTG TT Predicted gene structure (within gDNA segment 138932 to 135838): Exon 1 137050 136601 ( 450 n); cDNA 131 582 ( 452 n); score: 0.763 MATCH C04HBa0031H05.1- SGN-E322644+ 0.763 450 0.773 C PGS_C04HBa0031H05.1-_SGN-E322644+ (137050 136601) Alignment (genomic DNA sequence = upper lines): GAAATCTGTC CAAAGCTGAA TGCGGAGATT TTGAGCGAA- AAATGCAGAA GAGACCACCT 136992 |||||||||| ||||| |||| |||||||||| ||||| ||| |||||||||| |||| |||| GAAATCTGTC CAAAGATGAA TGCGGAGATT TTGAGTGAAG AAATGCAGAA TAGACGACCT 190 ACGGAGCTTA TGACGGTCCG TAG-G-TGGC AGCGTAGAGA AGCTGCTGAA GGAAGATGGG 136934 || ||||||| |||||||||| | | | | | || | || || | | || || ACAGAGCTTA TGACGGTCCG TCGTGCTTGT GACGGTCTGT AGGTG-GCAG CGTAG-TGCA 248 GAAGCCTGAC CAAG-TGTGG GATTAAGAAG CTTGTGACGG TCCGTCATGG CT-ATGATGG 136876 | || | ||| || || | | | | | ||| ||| | | | | |||| || GCTGCTGAAA GAAGATGGGG AAGTCTG-AC CAAGTG-CGG GGCTACGGAG TTCATGACGG 306 TCCGTCCTGC AGGTTCGTCG TGAAGATTAG AGAAGTGATC CTAGTACCCA GATTCCAAGA 136816 |||||||||| ||||||||| ||||| | || |||||| || | |||||||| ||||||||| TCCGTCCTGC AGGTTCGTCA TGAAGTTCAG AGAAGTAGTC CCAGTACCCA TATTCCAAGA 366 GTTGAAGTAT TTTGAAACG- AGACCCTCGA CGGACCGTTG TGCTTATGAC AGTCCGTCAC 136757 ||| |||| | |||||||| |||||||||| |||||||| ||| |||||| |||||||| GTTCAAGTGT GTTGAAACGA AGACCCTCGA TAGACCGTTG TGCCTATGAC GGTCCGTCAT 426 ACTTGCCGTC GAGGGGAATG AAGAAAGCAG CAGAAG-AAT TGCACCAAGT ATGGGACGAC 136698 || ||||||| ||||| |||| |||| || || || ||| ||| |||| |||| |||||||||| ACCTGCCGTC GAGGGTAATG AAGAGAGAAG CAAAAGAAAT TGCA-TAAGT ATGGGACGAC 485 GGAGTCCACG ACGGTCTGTC ATGACCACGA CGGTCCGTCG CATGGTCCGT CGACCCAGCC 136638 ||||||| | |||||| || |||||| || || ||||||| | || || |||||||||| AGAGTCCATG ACGGTCCATC GTGACCATGA CGATCCGTCG TGAGTTCTGT CGACCCAGCC 545 GCGTTTTGGC AGATTTCCAG TAATTAGAAT CCTTATT 136601 |||||||||| |||||||||| || |||| | |||| || GCGTTTTGGC AGATTTCCAG CAAATAGAGT CCTTGTT 582 hqPGS_C04HBa0031H05.1-_SGN-E322644+ (137050 136601) ******************************************************************************** EST sequence 73 +strand 680 n (File: SGN-E346859+) 1 TTGATATGCC TTGGTATAAA AGAAGGCTTG ATCGATTGAC AGAATAAGAT TAGTGGAGCG 61 GGTGTCATGA ACCGACACGT AGAATTAGGG GATCGGGTAT CACGAACTGA CACGTAGAAC 121 TAGGGGATTG ATATACCGTG GTTTCACGGT ATAATTAATA CTTTTTCCTT AAGTTTAGTG 181 TGTCCGAAAG CCCTTTTTGT GCTAATTTTG ATATAAGTTT TTCTTTGTTT TGCAGGAAAT 241 CTGTCTAAAG CTGAATGCGG AGATTTTGAG CGATAAATGC AGAAGAGACC ACCTACGGAG 301 CTTATGACGG TCCGTCGTGC TTGTGACGGT CCGTAGGTGG CAGCGTAGAG AAGCTGCTGA 361 AGGAAGATGG GGAAGTCTGA CCAAGTGTGG GATTACGAAG CTTGTGACGG TCCGTCATGG 421 ATATGACGGT CCGTCCTGCA GGTTCGTCGC GAAGATCAGA GAAGTGATCC CAGTACCCAA 481 ATTCCAAAAG TTGAAGTATT TTGTAACGAA GACCCTCGAC GGACCGTCGT GCCTGTGACG 541 GTCCGTCACA CTTGCCGTCG AGGGGAATGA AGAAAGCAGC AGAAGAATTG CACCCAAGTA 601 TGGGGCGACG GAGCCCATGA CGGTCCGTCA TGACCACGAC GTTCTGTCGC GTGGTCCGTC 661 GACCCAGCCG CGTTTTGGCA Predicted gene structure (within gDNA segment 139028 to 135242): Exon 1 137164 136627 ( 538 n); cDNA 122 680 ( 559 n); score: 0.847 MATCH C04HBa0031H05.1- SGN-E346859+ 0.847 538 0.791 C PGS_C04HBa0031H05.1-_SGN-E346859+ (137164 136627) Alignment (genomic DNA sequence = upper lines): AGGGTGTTGA TATACCGTGG TTTCACAGTA TAATTAATAC TTTTTCCTTA AGTTTAGTGT 137105 |||| |||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| AGGGGATTGA TATACCGTGG TTTCACGGTA TAATTAATAC TTTTTCCTTA AGTTTAGTGT 181 ATTTGAAAGC CCTTTTTGTG CTAATTTTGA TATAAGTTTC TCTTTGTTTT GCAGGAAATC 137045 | |||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| GTCCGAAAGC CCTTTTTGTG CTAATTTTGA TATAAGTTTT TCTTTGTTTT GCAGGAAATC 241 TGTCCAAAGC TGAATGCGGA GATTTTGAGC GAAAAATGCA GAAGAGACCA CCTACGGAGC 136985 |||| ||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| TGTCTAAAGC TGAATGCGGA GATTTTGAGC GATAAATGCA GAAGAGACCA CCTACGGAGC 301 -T-T-A---- ---------- --TGACGGTC CGTAGGTGGC AGCGTAGAGA AGCTGCTGAA 136944 | | | |||||||| |||||||||| |||||||||| |||||||||| TTATGACGGT CCGTCGTGCT TGTGACGGTC CGTAGGTGGC AGCGTAGAGA AGCTGCTGAA 361 GGAAGATGGG GAAGCCTGAC CAAGTGTGGG ATTAAGAAGC TTGTGACGGT CCGTCATGGC 136884 |||||||||| |||| ||||| |||||||||| |||| ||||| |||||||||| ||||||||| GGAAGATGGG GAAGTCTGAC CAAGTGTGGG ATTACGAAGC TTGTGACGGT CCGTCATGGA 421 TATGATGGTC CGTCCTGCAG GTTCGTCGTG AAGATTAGAG AAGTGATCCT AGTACCCAGA 136824 ||||| |||| |||||||||| |||||||| | ||||| |||| ||||||||| |||||||| | TATGACGGTC CGTCCTGCAG GTTCGTCGCG AAGATCAGAG AAGTGATCCC AGTACCCAAA 481 TTCCAAGAGT TGAAGTATTT TGAAACG-AG ACCCTCGACG GACCGTTGTG CTTATGACAG 136765 |||||| ||| |||||||||| || |||| || |||||||||| |||||| ||| | | |||| | TTCCAAAAGT TGAAGTATTT TGTAACGAAG ACCCTCGACG GACCGTCGTG CCTGTGACGG 541 TCCGTCACAC TTGCCGTCGA GGGGAATGAA GAAAGCAGCA GAAGAATTGC A-CCAAGTAT 136706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| TCCGTCACAC TTGCCGTCGA GGGGAATGAA GAAAGCAGCA GAAGAATTGC ACCCAAGTAT 601 GGGACGACGG AGTCCACGAC GGTCTGTCAT GACCACGACG GTCCGTCGCA TGGTCCGTCG 136646 ||| |||||| || ||| ||| |||| ||||| |||||||||| || ||||| |||||||||| GGGGCGACGG AGCCCATGAC GGTCCGTCAT GACCACGACG TTCTGTCGCG TGGTCCGTCG 661 ACCCAGCCGC GTTTTGGCA 136627 |||||||||| ||||||||| ACCCAGCCGC GTTTTGGCA 680 hqPGS_C04HBa0031H05.1-_SGN-E346859+ (137164 136627) ******************************************************************************** EST sequence 37 -strand 534 n (File: SGN-E286708-) 1 TGGTGGCCAA GTGATATACC GTGGTTTCAT GGTATTATTA ATACTTTTTC CTTAAGTTTA 61 GTGTGTCTAA AATCCTTTTT GTGCTAATTT CTATATTAGT TTCTTTTTAT TTTGCAGGAA 121 ATCTGTCCAA AGCTGAATGC GGAGATTTTG AGCGAAGAAA TGCAGAAGAG ACCACCTACG 181 GAGCTTATGA CGGTCCGTCG TGCTTGTGAC GGTCCGTAGG TGTCAGCGTA GTGCAGCTGC 241 TGAAGGAAGA TGGGGAAGTC TGACCAAGTA TGGGGTTACG AAGCTTGTGA CGGTCCATCG 301 TGTCTATGAC GGTCCGTCCT ACAGGTTCGT CATGAAGTTC AGAGAAGTAA TCCCAGTACC 361 CATATTCCAA GAGTTAAAGT GTTTTGGAAC GAAGGCCCTC GACGGACCGT TGTGCCTATG 421 ACGGTCCGCC ATACTTGCCG TTGAGGGTAA TGAAGAAGAG CAACAAAAGA AATTGCATAA 481 GTATGGGACG ACGGAGTCCA TGACGGTCCG TCGTGACCAT GACGGACCTC GCGA Predicted gene structure (within gDNA segment 137877 to 133570): Exon 1 137157 136662 ( 496 n); cDNA 12 528 ( 517 n); score: 0.785 MATCH C04HBa0031H05.1- SGN-E286708- 0.785 496 0.929 C PGS_C04HBa0031H05.1-_SGN-E286708- (137157 136662) Alignment (genomic DNA sequence = upper lines): TGATATACCG TGGTTTCACA GTATAATTAA TACTTTTTCC TTAAGTTTAG TGTATTTGAA 137098 |||||||||| |||||||| |||| ||||| |||||||||| |||||||||| ||| | | || TGATATACCG TGGTTTCATG GTATTATTAA TACTTTTTCC TTAAGTTTAG TGTGTCT-AA 70 AGCCCTTTTT GTGCTAATTT TGATATAAGT TTCTCTTTGT TTTGCAGGAA ATCTGTCCAA 137038 | ||||||| |||||||||| |||| ||| |||| ||| | |||||||||| |||||||||| AATCCTTTTT GTGCTAATTT CTATATTAGT TTCTTTTTAT TTTGCAGGAA ATCTGTCCAA 130 AGCTGAATGC GGAGATTTTG AGCGAA-AAA TGCAGAAGAG ACCACCTACG GAGCTTATGA 136979 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| AGCTGAATGC GGAGATTTTG AGCGAAGAAA TGCAGAAGAG ACCACCTACG GAGCTTATGA 190 CGGTCCGTAG -G--TG-G-C AG--CGTA-- -G--A--G-A ----AGCTGC TGAAGGAAGA 136938 |||||||| | | || | | | |||| | | | | |||||| |||||||||| CGGTCCGTCG TGCTTGTGAC GGTCCGTAGG TGTCAGCGTA GTGCAGCTGC TGAAGGAAGA 250 TGGGGAAGCC TGACCAAGTG TGGGATTAAG AAGCTTGTGA CGGTCCGTCA TGGCTATGAT 136878 |||||||| | ||||||||| |||| ||| | |||||||||| |||||| || || |||||| TGGGGAAGTC TGACCAAGTA TGGGGTTACG AAGCTTGTGA CGGTCCATCG TGTCTATGAC 310 GGTCCGTCCT GCAGGTTCGT CGTGAAGATT AGAGAAGTGA TCCTAGTACC CAGATTCCAA 136818 |||||||||| ||||||||| | ||||| | |||||||| | ||| |||||| || ||||||| GGTCCGTCCT ACAGGTTCGT CATGAAGTTC AGAGAAGTAA TCCCAGTACC CATATTCCAA 370 GAGTTGAAGT ATTTTGAAAC G-AGACCCTC GACGGACCGT TGTGCTTATG ACAGTCCGTC 136759 ||||| |||| ||||| ||| | || ||||| |||||||||| ||||| |||| || ||||| | GAGTTAAAGT GTTTTGGAAC GAAGGCCCTC GACGGACCGT TGTGCCTATG ACGGTCCGCC 430 ACACTTGCCG TCGAGGGGAA TGAAGAA-AG CAGCAGAAG- AATTGCACCA AGTATGGGAC 136701 | |||||||| | ||||| || ||||||| || || || ||| ||||||| | |||||||||| ATACTTGCCG TTGAGGGTAA TGAAGAAGAG CAACAAAAGA AATTGCA-TA AGTATGGGAC 489 GACGGAGTCC ACGACGGTCT GTCATGACCA CGACGGTCC 136662 |||||||||| | ||||||| ||| |||||| ||||| || GACGGAGTCC ATGACGGTCC GTCGTGACCA TGACGGACC 528 hqPGS_C04HBa0031H05.1-_SGN-E286708- (137157 136662) ******************************************************************************** EST sequence 28 -strand 800 n (File: SGN-E540293-) 1 AGTAGCCTAA ACTAAGTCTA TGTGAGAGGT CTAGAGCCAA GGAAGAGGGC TAGGGCAGCC 61 AAATTTTCCC CAGACATTTC CCACCTTCTC ACGACCACCG TAATGGACAA TGCTGAGGAC 121 CACAGATCGT GGTGGGCTAG GCTGTGGCTA GGTGAAATCT GCCCAAAATA GCCCCCTCCA 181 CACAAGCTAT TTCACGGCTC GTGAAAGCTA TTATTGGCCG TGGAAAGGCT CGTGGTGGGG 241 ACTTAGTTTT GAGGGGTTAA GGAAGTGGTG GCCAAGTGAT ATACCGTGGT TTCATGGTAT 301 TATTAATACT TTTTCCTTAA GTTTAGTGTG TCTAAAATCC TTTTTGTGCT AATTTCTATA 361 TTAGTTTCTT TTTATTTTGC AGGAAATCTG TCCAAAGCTG AATGCGGAGA TTTTGAGCGA 421 AGAAATGCAG AAGAGACCAC CTACGGAGCT TATGACGGTC CGTCGTGCTT GTGACGGTCC 481 GTAGGTGTCA GCGTAGTGCA GCTGCTGAAG GAAGATGGGG AAGTCTGACC AAGTATGGGG 541 TTACGAAGCT TGTGACGGTC CATCGTGTCT ATGACGGTCC GTCCTACAGG TTCGTCATGA 601 AGTTCAGAGA AGTAATCCCA GTACCCATAT TCCAAGAGTT AAAGTGTTTT GGAACGAAGG 661 CCCTCGACGG ACCGTTGTGC CTATGACGGT CCGCCATACT TGCCGTTGAG GGTAATGAAG 721 AAGAGCAACA AAAGAAATTG CATAAGTATG GGACGACGGA GTCCATGACG GTCCGTCGTG 781 ACCATGACGG ACCTCGCGAC Predicted gene structure (within gDNA segment 140527 to 133560): Exon 1 137157 136662 ( 496 n); cDNA 277 793 ( 517 n); score: 0.785 MATCH C04HBa0031H05.1- SGN-E540293- 0.785 496 0.620 C PGS_C04HBa0031H05.1-_SGN-E540293- (137157 136662) Alignment (genomic DNA sequence = upper lines): TGATATACCG TGGTTTCACA GTATAATTAA TACTTTTTCC TTAAGTTTAG TGTATTTGAA 137098 |||||||||| |||||||| |||| ||||| |||||||||| |||||||||| ||| | | || TGATATACCG TGGTTTCATG GTATTATTAA TACTTTTTCC TTAAGTTTAG TGTGTCTAAA 336 AGCCCTTTTT GTGCTAATTT TGATATAAGT TTCTCTTTGT TTTGCAGGAA ATCTGTCCAA 137038 | ||||||| |||||||||| |||| ||| |||| ||| | |||||||||| |||||||||| A-TCCTTTTT GTGCTAATTT CTATATTAGT TTCTTTTTAT TTTGCAGGAA ATCTGTCCAA 395 AGCTGAATGC GGAGATTTTG AGCGAA-AAA TGCAGAAGAG ACCACCTACG GAGCTTATGA 136979 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| AGCTGAATGC GGAGATTTTG AGCGAAGAAA TGCAGAAGAG ACCACCTACG GAGCTTATGA 455 C-G---GTC- --C--GT-A- -G---GT--G -G-CAGCGTA GAGAAGCTGC TGAAGGAAGA 136938 | | ||| | || | | || | | ||||||| | | |||||| |||||||||| CGGTCCGTCG TGCTTGTGAC GGTCCGTAGG TGTCAGCGTA GTGCAGCTGC TGAAGGAAGA 515 TGGGGAAGCC TGACCAAGTG TGGGATTAAG AAGCTTGTGA CGGTCCGTCA TGGCTATGAT 136878 |||||||| | ||||||||| |||| ||| | |||||||||| |||||| || || |||||| TGGGGAAGTC TGACCAAGTA TGGGGTTACG AAGCTTGTGA CGGTCCATCG TGTCTATGAC 575 GGTCCGTCCT GCAGGTTCGT CGTGAAGATT AGAGAAGTGA TCCTAGTACC CAGATTCCAA 136818 |||||||||| ||||||||| | ||||| | |||||||| | ||| |||||| || ||||||| GGTCCGTCCT ACAGGTTCGT CATGAAGTTC AGAGAAGTAA TCCCAGTACC CATATTCCAA 635 GAGTTGAAGT ATTTTGAAAC G-AGACCCTC GACGGACCGT TGTGCTTATG ACAGTCCGTC 136759 ||||| |||| ||||| ||| | || ||||| |||||||||| ||||| |||| || ||||| | GAGTTAAAGT GTTTTGGAAC GAAGGCCCTC GACGGACCGT TGTGCCTATG ACGGTCCGCC 695 ACACTTGCCG TCGAGGGGAA TGAAGAA-AG CAGCAGAAG- AATTGCACCA AGTATGGGAC 136701 | |||||||| | ||||| || ||||||| || || || ||| ||||||| | |||||||||| ATACTTGCCG TTGAGGGTAA TGAAGAAGAG CAACAAAAGA AATTGCA-TA AGTATGGGAC 754 GACGGAGTCC ACGACGGTCT GTCATGACCA CGACGGTCC 136662 |||||||||| | ||||||| ||| |||||| ||||| || GACGGAGTCC ATGACGGTCC GTCGTGACCA TGACGGACC 793 hqPGS_C04HBa0031H05.1-_SGN-E540293- (137157 136662) ******************************************************************************** EST sequence 15 -strand 673 n (File: SGN-E352282-) 1 AATTCAAGCA TAATAGTGAT AACATGCATA AACATGATGA GAATGATTGG GATTGATAGT 61 CAAATGATTG CGAACGCTAA AATATAGATA CTCTNGTACA AAGATTTTGT AGTGAGTCAT 121 AGTGTGTCAC TTGAGGACAA ACAACAAATT TAAGTTGAGG GTGTTGATGT ACCGTGGTTT 181 CACGGTATTT TTAATGCTTT TTCCTTAAGT TTAGTGTGTG TCCAAAAGCC TTTTTGTATT 241 GATTTTTATG TCAGTTTCTA CTTATTTACA GGTTATCTGT CCAAAGATGA ACGCAGAAGT 301 TTTTGAGTGA TAAATGCAGC AGAGACCACC TACGGAGCTT ATGACGATCC GTCGAGTCTG 361 TGACGGTCCA TAGGTGTCAT CATAGTGAGA AGAGAAGTTG CTGAAGGAAG ATGGGGAAGT 421 ATGACCTAGT GTGGGATTAC GGAAGTCCAT GACGGACCGT CATTGCCACA ACGGTCCATC 481 CTGCTGGTTC ATCATAATGA TCAGAGAGTA CTCCCAGTAC CCAAATTCAA ATAAGTTAAA 541 GTATTATGGA ACGGAGACCC TCGACAGACC ATCGTTCTTG GAACAGTCTG TCATACCTGT 601 TTGTTGAGGG TAATGAAGAT AGAAGAAGAA GAATATGTGA AGTATGGGAC GACGGAGGCC 661 ATGACGGCCC GTC Predicted gene structure (within gDNA segment 138894 to 131504): Exon 1 137322 136678 ( 645 n); cDNA 1 673 ( 673 n); score: 0.702 MATCH C04HBa0031H05.1- SGN-E352282- 0.702 645 0.958 C PGS_C04HBa0031H05.1-_SGN-E352282- (137322 136678) Alignment (genomic DNA sequence = upper lines): AATTCAAGCC TAATAGTGAT AGCATGCATA GATTTGATGA GATTAATCGG GATTGATAGC 137263 ||||||||| |||||||||| | |||||||| | |||||| || | || || ||||||||| AATTCAAGCA TAATAGTGAT AACATGCATA AACATGATGA GAATGATTGG GATTGATAGT 60 CAAATGATTG CAAAGGATAA AAACATGAAT ACTATTGTAC AAAGATTGTG TAGTGAGTCA 137203 |||||||||| | || | | | ||| || || ||| | |||| ||||||| || |||||||||| CAAATGATTG CGAACGCT-A AAATATAGAT ACTCTNGTAC AAAGATTTTG TAGTGAGTCA 119 TAGTGCTTCG CTTGAGGACA AACAACAAAT TTAAGTTGAG GGTGTTGATA TACCGTGGTT 137143 ||||| || |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TAGTGTGTCA CTTGAGGACA AACAACAAAT TTAAGTTGAG GGTGTTGATG TACCGTGGTT 179 TCACAGTATA ATTAATACTT TTTCCTTAAG TTTAGTGTAT -TTGAAAGCC CTTTTTGTGC 137084 |||| |||| ||||| ||| |||||||||| |||||||| | | ||| | |||||||| TCACGGTATT TTTAATGCTT TTTCCTTAAG TTTAGTGTGT GTCCAAAAGC CTTTTTGTAT 239 TAATTTTGAT ATAAGTTTCT CTTTGTTTTG CAGGAAATCT GTCCAAAGCT GAATGC-GGA 137025 | ||||| || | ||||||| || ||| |||| |||| |||||||| | ||| || | | TGATTTTTAT GTCAGTTTCT ACTT-ATTTA CAGGTTATCT GTCCAAAGAT GAACGCAGAA 298 GATTTTGAGC GAAAAATGCA GAAGAGACCA CCTACGGAGC TTATGACG-- --GTC----C 136973 | ||||||| || ||||||| | |||||||| |||||||||| |||||||| ||| | GTTTTTGAGT GATAAATGCA GCAGAGACCA CCTACGGAGC TTATGACGAT CCGTCGAGTC 358 -GT-A-GG-- --T--G-G-C AGC---GT-- --AGAGAAGC TGCTGAAGGA AGATGGGGAA 136931 || | || | | | | | | || ||||||| |||||||||| |||||||||| TGTGACGGTC CATAGGTGTC ATCATAGTGA GAAGAGAAGT TGCTGAAGGA AGATGGGGAA 418 GCCTGACCAA GTGTGGGATT A-AGAAGCTT GTGACGGTCC GTCATGGCTA TGATGGTCCG 136872 | ||||| | |||||||||| | |||| |||||| || ||||| || | | ||||| GTATGACCTA GTGTGGGATT ACGGAAGTCC ATGACGGACC GTCATTGCCA CAACGGTCCA 478 TCCTGCAGGT TCGTCGTGAA GATTAGAGAA GTGATCCTAG TACCCAGATT CCAA-GAGTT 136813 |||||| ||| || || | | ||| |||| | || ||| || |||||| ||| | || |||| TCCTGCTGGT TCATCATAAT GATCAGAG-A GTACTCCCAG TACCCAAATT CAAATAAGTT 537 GAAGTATTTT GAAAC-GAGA CCCTCGACGG ACCGTTGTGC TTATGACAGT CCGTCACACT 136754 ||||||| | | ||| |||| |||||||| | ||| | || | || ||||| | |||| || AAAGTATTAT GGAACGGAGA CCCTCGACAG ACCATCGTTC TTGGAACAGT CTGTCATACC 597 TG-CCGTCGA GGGGAATGAA GAAAGCAGCA GAAGAATTGC ACCAAGTATG GGACGACGGA 136695 || || || ||| |||||| || || || | |||||| | ||||||| |||||||||| TGTTTGTTGA GGGTAATGAA GATAGAAGAA GAAGAA-TAT GTGAAGTATG GGACGACGGA 656 GTCCACGACG GTCTGTC 136678 | ||| |||| | | ||| GGCCATGACG GCCCGTC 673 hqPGS_C04HBa0031H05.1-_SGN-E352282- (137322 136678) ******************************************************************************** EST sequence 42 -strand 522 n (File: SGN-E243969-) 1 GGTATAATTA ATACTTTTGC CTTAAGTTTA AAGTGTCCGA AAGCCTTTTT TGTGCTAATT 61 TTGATATAAG TTTCTCTTTG TTTTGCAGGA AATCTGTCAA AAGCTGAAAG CGGAGATTTT 121 GAGCAAAAAA ATGCAGAAGA GACCACCTAC GGAGCTTTTG AAGGTCTGTC GTGCTTGTGA 181 CGGTCCGTAG GTGGTAGCGT AGAGAAGCTG CTGAAGGAAG ATGGGGAAGT CTGACCAAGT 241 GTGGGATTAC GAAGCTTGTG ACGGTCCGTC ATGGCTATGA CGGTCCGTCC TGCAGGTTCG 301 TCGTGAAGAT CAGAGAAGTG ATCCCAGTAC CCAGATTCCA AGAGTTGAAG TATTTTGAAA 361 CGAAGACCCT CGACAGACCG TTGTACCTAT GACGGTCCGT TACACTTGCC GTCGAGGGGA 421 ATGAAGAAAG CAGCAGAAGA AATTGCACCA AGTATGGGAC GACAGAGTCC ACGACGGTCC 481 GTCGCGTGGT CCGTCGACCA AGCCGCGTTT TGGCAGATTT CC Predicted gene structure (within gDNA segment 138162 to 136020): Exon 1 137137 136678 ( 460 n); cDNA 2 483 ( 482 n); score: 0.830 MATCH C04HBa0031H05.1- SGN-E243969- 0.830 460 0.881 C PGS_C04HBa0031H05.1-_SGN-E243969- (137137 136678) Alignment (genomic DNA sequence = upper lines): GTATAATTAA TACTTTTTCC TTAAGTTTAG TGTATTTGAA AGCCCTTTTT GTGCTAATTT 137078 |||||||||| ||||||| || ||||||||| || | ||| |||| ||||| |||||||||| GTATAATTAA TACTTTTGCC TTAAGTTTAA AGTGTCCGAA AGCCTTTTTT GTGCTAATTT 61 TGATATAAGT TTCTCTTTGT TTTGCAGGAA ATCTGTCCAA AGCTGAATGC GGAGATTTTG 137018 |||||||||| |||||||||| |||||||||| ||||||| || ||||||| || |||||||||| TGATATAAGT TTCTCTTTGT TTTGCAGGAA ATCTGTCAAA AGCTGAAAGC GGAGATTTTG 121 AGC-GAAAAA TGCAGAAGAG ACCACCTACG GAGC--TT-- A--------- TG------AC 136978 ||| ||||| |||||||||| |||||||||| |||| || | || || AGCAAAAAAA TGCAGAAGAG ACCACCTACG GAGCTTTTGA AGGTCTGTCG TGCTTGTGAC 181 GGTCCGTAGG TGGCAGCGTA GAGAAGCTGC TGAAGGAAGA TGGGGAAGCC TGACCAAGTG 136918 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||| | |||||||||| GGTCCGTAGG TGGTAGCGTA GAGAAGCTGC TGAAGGAAGA TGGGGAAGTC TGACCAAGTG 241 TGGGATTAAG AAGCTTGTGA CGGTCCGTCA TGGCTATGAT GGTCCGTCCT GCAGGTTCGT 136858 |||||||| | |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TGGGATTACG AAGCTTGTGA CGGTCCGTCA TGGCTATGAC GGTCCGTCCT GCAGGTTCGT 301 CGTGAAGATT AGAGAAGTGA TCCTAGTACC CAGATTCCAA GAGTTGAAGT ATTTTGAAAC 136798 ||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| CGTGAAGATC AGAGAAGTGA TCCCAGTACC CAGATTCCAA GAGTTGAAGT ATTTTGAAAC 361 G-AGACCCTC GACGGACCGT TGTGCTTATG ACAGTCCGTC ACACTTGCCG TCGAGGGGAA 136739 | |||||||| ||| |||||| ||| | |||| || |||||| |||||||||| |||||||||| GAAGACCCTC GACAGACCGT TGTACCTATG ACGGTCCGTT ACACTTGCCG TCGAGGGGAA 421 TGAAGAAAGC AGCAGAAG-A ATTGCACCAA GTATGGGACG ACGGAGTCCA CGACGGTCTG 136680 |||||||||| |||||||| | |||||||||| |||||||||| || ||||||| |||||||| | TGAAGAAAGC AGCAGAAGAA ATTGCACCAA GTATGGGACG ACAGAGTCCA CGACGGTCCG 481 TC 136678 || TC 483 hqPGS_C04HBa0031H05.1-_SGN-E243969- (137137 136678) ******************************************************************************** EST sequence 8 -strand 716 n (File: SGN-E578039-) 1 GTAATCCTTA TACTCAAACT AAAATCACTG TGTGAAAAAG GAGGATTTTG TCTTATAGTG 61 AGGACACTAG TTGCAATACT AGAATTGTTA GCACCTCGGT GAGAAATTGA AGAGGATAGG 121 TGTTAGTGCA TGGTAAGTCT GTGTCATATT CTGATCCCAC AAAATTCAAA CCTAATAGTG 181 ATAGCATGCA TAGATTTGAT GAGATTAATC GGGATTGATA GCCAAATGAT TGCAAAGGAT 241 AAAACATGGA TACTATTGTA CAAAGATTGT GTAGTGAGTC ATAGTGCGTC GCTTGAGGAC 301 AAACAACTAA TTTAAGTTGA GGGTGTTGAT ATACCGTGGT TTCACGGTAT TATTAATACT 361 TTTTCCTTAA GCTTAGTGTG TCCAAAAGCC TTTTTGTGCT AATTTTTATA TAAGTTACTC 421 TTTGTTTTGC AGGAAATCTG TCCAAAGCTG AATGCGGAGA TTTTGAGCGA AGAAATGCAG 481 AAGAAACCAC CTACGGAGCT TATGACGGTC CGTCGTGCTT GTGACGGTCC GTAGGTGGAA 541 GCGTAGTGCA GCTGCTGAAG GAAGATAGGG AAGTCTGACT AAGTGTGGGA TTACGAAGCT 601 TGTGACGGTC CGTCGTGGAT CTGACGGTCC GTCCTGCAGG TTCGTCGTGA AGTTCAGAGA 661 AGTGATCCCA GTACCCAAAT TCCAAGAGTT GAAGTGTATT AGAACAAAGA CCCTCG Predicted gene structure (within gDNA segment 138940 to 135611): Exon 1 137484 136788 ( 697 n); cDNA 1 716 ( 716 n); score: 0.852 MATCH C04HBa0031H05.1- SGN-E578039- 0.852 697 0.973 C PGS_C04HBa0031H05.1-_SGN-E578039- (137484 136788) Alignment (genomic DNA sequence = upper lines): GTAATCCTTA TACTCAAACT GAAATCATTG TGTGAAAAAT GAGGATTTTG TTCTAAAGTG 137425 |||||||||| |||||||||| |||||| || ||||||||| |||||||||| | || |||| GTAATCCTTA TACTCAAACT AAAATCACTG TGTGAAAAAG GAGGATTTTG TCTTATAGTG 60 AGGACACTAG TTGCTATACC GGAATTGTTA GCCTCTCGGT GAGAAATTGA AGAGGATAGG 137365 |||||||||| |||| |||| ||||||||| || |||||| |||||||||| |||||||||| AGGACACTAG TTGCAATACT AGAATTGTTA GCACCTCGGT GAGAAATTGA AGAGGATAGG 120 TGTTAGTGCG TGGTGAGTCT GTGTCATGTT CGAATCCCAC AAAATTCAAG CCTAATAGTG 137305 ||||||||| |||| ||||| ||||||| || | ||||||| ||||||||| |||||||||| TGTTAGTGCA TGGTAAGTCT GTGTCATATT CTGATCCCAC AAAATTCAAA CCTAATAGTG 180 ATAGCATGCA TAGATTTGAT GAGATTAATC GGGATTGATA GCCAAATGAT TGCAAAGGAT 137245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGCATGCA TAGATTTGAT GAGATTAATC GGGATTGATA GCCAAATGAT TGCAAAGGAT 240 AAAAACATGA ATACTATTGT ACAAAGATTG TGTAGTGAGT CATAGTGCTT CGCTTGAGGA 137185 |||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| -AAAACATGG ATACTATTGT ACAAAGATTG TGTAGTGAGT CATAGTGCGT CGCTTGAGGA 299 CAAACAACAA ATTTAAGTTG AGGGTGTTGA TATACCGTGG TTTCACAGTA TAATTAATAC 137125 |||||||| | |||||||||| |||||||||| |||||||||| |||||| ||| | |||||||| CAAACAACTA ATTTAAGTTG AGGGTGTTGA TATACCGTGG TTTCACGGTA TTATTAATAC 359 TTTTTCCTTA AGTTTAGTGT ATTTGAAAGC CCTTTTTGTG CTAATTTTGA TATAAGTTTC 137065 |||||||||| || ||||||| | |||| |||||||||| |||||||| | |||||||| | TTTTTCCTTA AGCTTAGTGT GTCCAAAAG- CCTTTTTGTG CTAATTTTTA TATAAGTTAC 418 TCTTTGTTTT GCAGGAAATC TGTCCAAAGC TGAATGCGGA GATTTTGAGC GAA-AAATGC 137006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| TCTTTGTTTT GCAGGAAATC TGTCCAAAGC TGAATGCGGA GATTTTGAGC GAAGAAATGC 478 AGAAGAGACC ACCTACGGAG CTTATGACGG TCCGTAG-G- -TG-G-CAG- -CGTA----G 136957 |||||| ||| |||||||||| |||||||||| ||||| | | || | | | |||| | AGAAGAAACC ACCTACGGAG CTTATGACGG TCCGTCGTGC TTGTGACGGT CCGTAGGTGG 538 -A--G-A--- -AGCTGCTGA AGGAAGATGG GGAAGCCTGA CCAAGTGTGG GATTAAGAAG 136905 | | | ||||||||| |||||||| | ||||| |||| | |||||||| ||||| |||| AAGCGTAGTG CAGCTGCTGA AGGAAGATAG GGAAGTCTGA CTAAGTGTGG GATTACGAAG 598 CTTGTGACGG TCCGTCATGG CTATGATGGT CCGTCCTGCA GGTTCGTCGT GAAGATTAGA 136845 |||||||||| |||||| ||| | ||| ||| |||||||||| |||||||||| |||| | ||| CTTGTGACGG TCCGTCGTGG ATCTGACGGT CCGTCCTGCA GGTTCGTCGT GAAGTTCAGA 658 GAAGTGATCC TAGTACCCAG ATTCCAAGAG TTGAAGTAT- TTTGAAACGA GACCCTCG 136788 |||||||||| |||||||| |||||||||| ||||||| | || ||| | |||||||| GAAGTGATCC CAGTACCCAA ATTCCAAGAG TTGAAGTGTA TTAGAACAAA GACCCTCG 716 hqPGS_C04HBa0031H05.1-_SGN-E578039- (137484 136788) ******************************************************************************** EST sequence 3 -strand 411 n (File: SGN-E577891-) 1 GCCAACAATG GCCTTCGAGT TCATGTCCCT GATATACCGT GGTTTCACGG TATAATTAAT 61 ACTTTTGCCT TAAGTTTAGT GTGTCCGTAA GCCTTTTTGT GCTAATTTTG GTATAAGTTT 121 CTCTTTATTT TGCAGGAAAT CTGTCCAAAG CTGAAAGCAG AGATTTTGAG CGAAAAAATG 181 TAGAAGAGAC CACCTACTGA GCTTATGACG GTCCATCGTG CCTTTGACGC TCCGTAGGTG 241 GCAGCGTAGA GAAGCTGCTG AAGGAAGATG GGGAAGTCTC ACCAAGTGTG GGATTACGAA 301 GATTGTGACG GTCCGTCATG GCTATGACGG TCCGTCCTGC AGGTTCGTCG TGAAGATCAG 361 AGAAGTGATT CCAGTACCCA GATTCCAAGA GCTGAAGTAT TTTGAAACGA A Predicted gene structure (within gDNA segment 138057 to 136186): Exon 1 137157 136796 ( 362 n); cDNA 30 410 ( 381 n); score: 0.801 MATCH C04HBa0031H05.1- SGN-E577891- 0.801 362 0.881 C PGS_C04HBa0031H05.1-_SGN-E577891- (137157 136796) Alignment (genomic DNA sequence = upper lines): TGATATACCG TGGTTTCACA GTATAATTAA TACTTTTTCC TTAAGTTTAG TGTATTTGAA 137098 |||||||||| ||||||||| |||||||||| ||||||| || |||||||||| ||| | | | TGATATACCG TGGTTTCACG GTATAATTAA TACTTTTGCC TTAAGTTTAG TGTGTCCGTA 89 AGCCCTTTTT GTGCTAATTT TGATATAAGT TTCTCTTTGT TTTGCAGGAA ATCTGTCCAA 137038 || ||||||| |||||||||| || ||||||| |||||||| | |||||||||| |||||||||| AG-CCTTTTT GTGCTAATTT TGGTATAAGT TTCTCTTTAT TTTGCAGGAA ATCTGTCCAA 148 AGCTGAATGC GGAGATTTTG AGCG-AAAAA TGCAGAAGAG ACCACCTACG GAGCTTATGA 136979 ||||||| || ||||||||| |||| ||||| || ||||||| ||||||||| |||||||||| AGCTGAAAGC AGAGATTTTG AGCGAAAAAA TGTAGAAGAG ACCACCTACT GAGCTTATGA 208 C-G------G T-CC---G-- ------TAGG TGGCAGCGTA GAGAAGCTGC TGAAGGAAGA 136938 | | | | || | |||| |||||||||| |||||||||| |||||||||| CGGTCCATCG TGCCTTTGAC GCTCCGTAGG TGGCAGCGTA GAGAAGCTGC TGAAGGAAGA 268 TGGGGAAGCC TGACCAAGTG TGGGATTAAG AAGCTTGTGA CGGTCCGTCA TGGCTATGAT 136878 |||||||| | | |||||||| |||||||| | ||| |||||| |||||||||| ||||||||| TGGGGAAGTC TCACCAAGTG TGGGATTACG AAGATTGTGA CGGTCCGTCA TGGCTATGAC 328 GGTCCGTCCT GCAGGTTCGT CGTGAAGATT AGAGAAGTGA TCCTAGTACC CAGATTCCAA 136818 |||||||||| |||||||||| ||||||||| |||||||||| | | |||||| |||||||||| GGTCCGTCCT GCAGGTTCGT CGTGAAGATC AGAGAAGTGA TTCCAGTACC CAGATTCCAA 388 GAGTTGAAGT ATTTTGAAAC GA 136796 ||| |||||| |||||||||| || GAGCTGAAGT ATTTTGAAAC GA 410 hqPGS_C04HBa0031H05.1-_SGN-E577891- (137157 136796) ******************************************************************************** EST sequence 93 +strand 816 n (File: SGN-E546067+) 1 CGTTGCCTCT CCATTGAGCT TGTCGCCGAC CATTCCATCA CTTACTGTGA AGACCTAGTT 61 TCCGTCGTTG ATTCCTGAGA ACTCCAATTA TCAATTTTGA ACAGTTTCAA TCCAGATGAT 121 GTTGTGGAGA TCATTTCTCA GTCAATCAAA GATCTCTATA GAGATGCTTT TCCTACTTGG 181 GGCAAGATGC CAAGCAATCT CAAGAGACAA ATATTTTTGG AGTTTAGAAA CAATGTGCTT 241 GGCATCTGGA ACATGAGGCC AAAATTTGTG CAAACTTTCA CAAGAAAGTT ACGCGTGTTC 301 TTGCTAGTTT GTTGAATAAA GCTCGTAAAA ATGATCAAAA ACCTAAGTGG ATTCTATAGG 361 ATGATTGGAA AAAATTACTT GTGCATTGGG AAAATGATTC AAGATTTAAG CAGATGAGCG 421 AGATCGGTGT GAAGGCTAGA TCATCTATTA AGGGTGGTTC TCTACACCAA GTGGGGCTCA 481 AAGTCAAGGA AGTGTGAGGA GGAAATTGGA AAAGGAACTA GGAAGACCAG TAACTCAAGC 541 TGAGGCATTC AAGGCAACAC ACATAAGAAA GAAGAAAAAT ACCGAAGATC CAGACGTGTG 601 GATTGAGCCG CGAGCTGAAG TGATCATGAA ATTTGTCCAA AGCCAAATGC GGAGATTTTG 661 AGAGAAGAAA TGCAGAAGAG ACCACCTATG GAGCTGATGA CGGTCCGTCG TGCTTGTGAC 721 GGTCCGTAGG TGGCAGTGTA GAGAAGTTGC TGAAAGAAGA TGGGGGAGTC TGACCAAGTG 781 TGGGATTACG AAGCTTGTGA CGGTCCGTCA TGGCTA Predicted gene structure (within gDNA segment 144082 to 136272): Exon 1 139665 139656 ( 10 n); cDNA 544 553 ( 10 n); score: 1.000 Intron 1 139655 137776 (1880 n); Pd: 0.787 (s: 0), Pa: 0.000 (s: 0.62) Exon 2 137775 137702 ( 74 n); cDNA 554 627 ( 74 n); score: 0.574 Intron 2 137701 137051 ( 651 n); Pd: 0.000 (s: 0.48), Pa: 1.000 (s: 0.87) Exon 3 137050 136966 ( 85 n); cDNA 628 712 ( 85 n); score: 0.876 Intron 3 136965 136905 ( 61 n); Pd: 0.000 (s: 0.87), Pa: 0.000 (s: 0) Exon 4 136904 136890 ( 15 n); cDNA 713 727 ( 15 n); score: 1.000 MATCH C04HBa0031H05.1- SGN-E546067+ 0.736 184 0.225 C PGS_C04HBa0031H05.1-_SGN-E546067+ (139665 139656,137775 137702,137050 136966,136904 136890) Alignment (genomic DNA sequence = upper lines): GGCATTCAAG GTCACTACCA CCTACCCCTT TCCGTGCATG ATCTTTGCCC TTTGCAGATC 139606 |||||||||| GGCATTCAAG .......... .......... .......... .......... .......... 553 TGTAGGTGTG CCCATATGGC ACATAGATCA GTTGAGGACC CCGCCGGGTA CCATTGACGT 139546 .......... .......... .......... .......... .......... .......... 553 CGGCCTCATC AGAGACGAGG CCAATGAGTT GGCCCCACGT CGAGGGCCCC GTCCAGATCT 139486 .......... .......... .......... .......... .......... .......... 553 GCCACCACTA TCTGATGATC TTGCGGAAAC GGTGGCCCAG GCCCGCACAG CTACACAGGC 139426 .......... .......... .......... .......... .......... .......... 553 ATCCACAGAC ACTACCCCGA TCGAGTCTAT CCCGGGTAGT AGCACAGCCC CTCTATCGAC 139366 .......... .......... .......... .......... .......... .......... 553 ACCGGCCTCG CTTGCTCGAG TCCAAAAACA GGAGGCACAA ATGGCCACTC TTCTGCATCA 139306 .......... .......... .......... .......... .......... .......... 553 TATCCAGCTG TGGATGCAGA AGTCTATTGC TGAGTCTGAA GCGCGTATGG AGAGGCAGAT 139246 .......... .......... .......... .......... .......... .......... 553 GCAGCGGAAG ATTGCTGAGG TTAACCAGCG CCTAGATGCC TTTGAATTGA GAGTATTAGC 139186 .......... .......... .......... .......... .......... .......... 553 TCGACCAGCC CTTCCGATAG ATGTGTCGAC TCTTCAGGCT GCAGTCGACA GTCTTCGTGC 139126 .......... .......... .......... .......... .......... .......... 553 AGACATCGAC ACGATTCTAG AGGCAAGAGT GCCGGAGTCT GTCGAGCCTG CTGAGGATAC 139066 .......... .......... .......... .......... .......... .......... 553 TGTATTGGCG GCCCTGTTTC CTACTCCAGA CATTCCCCTA TCTTCCCCGA GAGAGAGTGC 139006 .......... .......... .......... .......... .......... .......... 553 CAAGAGGCGG AGGGGTCGAT AAGAGGATGA GGCGCGAGCA AGGAAGAAGG AGCGCCGAGA 138946 .......... .......... .......... .......... .......... .......... 553 GATGGAGGCC GCGAGGAGAG CCTCACTTGC TGAGGCGGAG GCACACCAGA TCAGAGCATC 138886 .......... .......... .......... .......... .......... .......... 553 ACAGATAGCG GTTGGGGCGT CTAGCTCCCG CACTGTAGAG ACAGTAGGAG GCACTACTGA 138826 .......... .......... .......... .......... .......... .......... 553 GGGTGCGGTT GTTGCTGAGG ACATCACTTA GGGTGTCTAG ATTGCAGAGG ATGTGGGTTC 138766 .......... .......... .......... .......... .......... .......... 553 TGGGAAACCA GACCCACCAA CTTGTTGATC AACGGCGCTA TGAGCCACAG GTTTGCTTCA 138706 .......... .......... .......... .......... .......... .......... 553 CCTACCCCTC TAATCTTTAG ATATTTTTTT TATGCATTGG GGACAATTGC ATGCTTTTTT 138646 .......... .......... .......... .......... .......... .......... 553 GTTGGGGTGG GGTAAATGGA AAGTGAGTGT TAGGGTGAAG TCTGAGTAGC CCAACTCACT 138586 .......... .......... .......... .......... .......... .......... 553 ATCCTTTTTT GGGATTTTCT TGCCTGTGTT CTTTTTCCCC AATAGACTGA TTACTTTTTC 138526 .......... .......... .......... .......... .......... .......... 553 TGTTGAACCG GCACGTTATA TCTTTTGTAC ATAGTTTAAC TCTGAAGCAT GATGGCTAAA 138466 .......... .......... .......... .......... .......... .......... 553 ATGATATCCC GATAAAACTG GAAAAGGTTG CATGAAAAGG CGTAGTAACT GATAATTGTG 138406 .......... .......... .......... .......... .......... .......... 553 TGGATCTAAA CATGAAATAG AGTTACACTA TTGCACTACC CTAAATCTTC AAGTCGAACT 138346 .......... .......... .......... .......... .......... .......... 553 AGGTGTCTGA TAATCTGGTA TAGTGATGAG ATGTCAAGTG AGTGTGAGGA AAGTTGAATA 138286 .......... .......... .......... .......... .......... .......... 553 GTCCACTACT GATACTGAGC TAGAACTTGC CTGGTTAGTC CTGCTAAAAG TAAGTTGTAA 138226 .......... .......... .......... .......... .......... .......... 553 CAGACAATTA GGAAAGGATC ATAGGCCCTT ATTCAATATA GCCCATTTCT AGCCTAAATA 138166 .......... .......... .......... .......... .......... .......... 553 AAAGAAACCA AATGAAAGTT ATCCTTCTTT GATCCAAATA ATTTGAGCTT AAAATTAGTC 138106 .......... .......... .......... .......... .......... .......... 553 CTTTCTTTTT CATCCCAACT GATCTTTTCT AGGAACAATA TGTTGGCCCT GGTCCCTCCT 138046 .......... .......... .......... .......... .......... .......... 553 TGGACATGTG CACCTCAGCT TATGCCAAAA GCATAAGTTG AGGGTGGCTA ATGTATAAAC 137986 .......... .......... .......... .......... .......... .......... 553 AACCTTCGTT ATGTCCCTGA CCCGACTTTG GGTATTGTGT ACCTTGACTC ATGGCAAAAC 137926 .......... .......... .......... .......... .......... .......... 553 CATGAGTTGA GGGTGGTTGT TTTGAGGAAT GCTCTGGAAA GTGGGGTTGA AAGAACAAAG 137866 .......... .......... .......... .......... .......... .......... 553 AGAGAGAAAG AACAAAAGTA AAGTGACTCA AGAACTCTTT AAAAAAAAGA GAAATATTTA 137806 .......... .......... .......... .......... .......... .......... 553 AGAATTACAA ACGAGAAAAG AAAAGAGTTA CTTACACAAA TGAAGAAAGA AGGAAAACAG 137746 ||||| | | |||||||| || |||| | .......... .......... .......... GCAACACACA T-AAGAAAGA AGAAAAATAC 582 CAAGGTGAAA GAATAGGAGA AACTG-GGCG AGATAAAGTG ATAGAAAGTG GAAGGTTTAG 137687 | | | | || | || | ||| || | ||||| || CGAAGATCCA GACGTGTGGA TTGAGCCGCG AGCTGAAGTG ATCAT..... .......... 627 CCGATATGTC AACGAGGGCA GAAAGTCACT AAAGTATACC TAAATATACC CTACCTGACT 137627 .......... .......... .......... .......... .......... .......... 627 CTGAGCCTAC GTTACAAGCT AAAAAAAGTC CTATCGTGAT CCTAAGGGTT GTATAGCGAA 137567 .......... .......... .......... .......... .......... .......... 627 CTTAAGGCAG TAAAAATAAG GGCAAGCTTA TGGCAATAGG TATGAATGAG TGTGACTTCG 137507 .......... .......... .......... .......... .......... .......... 627 TTCTGAGAGC GAGTGTTGAA ATGTAATCCT TATACTCAAA CTGAAATCAT TGTGTGAAAA 137447 .......... .......... .......... .......... .......... .......... 627 ATGAGGATTT TGTTCTAAAG TGAGGACACT AGTTGCTATA CCGGAATTGT TAGCCTCTCG 137387 .......... .......... .......... .......... .......... .......... 627 GTGAGAAATT GAAGAGGATA GGTGTTAGTG CGTGGTGAGT CTGTGTCATG TTCGAATCCC 137327 .......... .......... .......... .......... .......... .......... 627 ACAAAATTCA AGCCTAATAG TGATAGCATG CATAGATTTG ATGAGATTAA TCGGGATTGA 137267 .......... .......... .......... .......... .......... .......... 627 TAGCCAAATG ATTGCAAAGG ATAAAAACAT GAATACTATT GTACAAAGAT TGTGTAGTGA 137207 .......... .......... .......... .......... .......... .......... 627 GTCATAGTGC TTCGCTTGAG GACAAACAAC AAATTTAAGT TGAGGGTGTT GATATACCGT 137147 .......... .......... .......... .......... .......... .......... 627 GGTTTCACAG TATAATTAAT ACTTTTTCCT TAAGTTTAGT GTATTTGAAA GCCCTTTTTG 137087 .......... .......... .......... .......... .......... .......... 627 TGCTAATTTT GATATAAGTT TCTCTTTGTT TTGCAGGAAA TCTGTCCAAA GCTGAATGCG 137027 |||| | |||||||| || |||||| .......... .......... .......... ......GAAA TTTGTCCAAA GCCAAATGCG 651 GAGATTTTGA GCGAA-AAAT GCAGAAGAGA CCACCTACGG AGCTTATGAC GGTCCGTAGG 136968 |||||||||| | ||| |||| |||||||||| ||||||| || |||| ||||| ||||||| | GAGATTTTGA GAGAAGAAAT GCAGAAGAGA CCACCTATGG AGCTGATGAC GGTCCGT-CG 710 TGGCAGCGTA GAGAAGCTGC TGAAGGAAGA TGGGGAAGCC TGACCAAGTG TGGGATTAAG 136908 || TG........ .......... .......... .......... .......... .......... 712 AAGCTTGTGA CGGTCCGT 136890 ||||||| |||||||| ...CTTGTGA CGGTCCGT 727 hqPGS_C04HBa0031H05.1-_SGN-E546067+ (137050 136966) ******************************************************************************** EST sequence 55 -strand 222 n (File: SGN-E356584-) 1 AGTTTAGTGT GTCCAAAAGC CTTTTTGTGC TAATTTTGAT ATAAGTTTCT CTTTATTTGC 61 AGGAAATCTG TGTAAAAGAT GAATTCAAAA GTTTTTGAGC ATGAAATACA GAAAAGTACA 121 ACCTACTGAG CTTTTCACGG TCCGTCATCC TCGTGCCGGT CCATAGGTGA CATCGTAGTT 181 CTGCTGATGA AGGAAGATGG GGAATTCTGA ACAAGTGTGG GG Predicted gene structure (within gDNA segment 137894 to 134932): Exon 1 137114 136973 ( 142 n); cDNA 1 143 ( 143 n); score: 0.785 MATCH C04HBa0031H05.1- SGN-E356584- 0.785 142 0.640 C PGS_C04HBa0031H05.1-_SGN-E356584- (137114 136973) Alignment (genomic DNA sequence = upper lines): AGTTTAGTGT ATTTGAAAGC CCTTTTTGTG CTAATTTTGA TATAAGTTTC TCTTTGTTTT 137055 |||||||||| | ||||| | |||||||| |||||||||| |||||||||| ||||| ||| AGTTTAGTGT GTCCAAAAGC C-TTTTTGTG CTAATTTTGA TATAAGTTTC TCTTT-ATTT 58 GCAGGAAATC TGT-CCAAAG CTGAATGC-G GAGATTTTGA GCGAAAAATG CAGAAGAG-A 136998 |||||||||| ||| |||| ||||| | || |||||| || |||| ||||| || | GCAGGAAATC TGTGTAAAAG ATGAATTCAA AAGTTTTTGA GCATGAAATA CAGAAAAGTA 118 CCACCTACGG AGCTTATGAC GGTCC 136973 | |||||| | ||||| | || ||||| CAACCTACTG AGCTTTTCAC GGTCC 143 hqPGS_C04HBa0031H05.1-_SGN-E356584- (137114 136973) ******************************************************************************** EST sequence 43 -strand 560 n (File: SGN-E244201-) 1 TTGGACATGT GCACCTCAGA TTATGCCAAA AGCATAAGTT GAGAGTGGCT AATGTAGTAA 61 ACAACCCTTT TTATGGCTCT GACCCAACTT TGGGTATTGA ATACTTTGAC TCATGGCAAA 121 GCCATGAGTT GAGAGTGGTT ATTATGAGGA ATGCTCTTGA AAGTGGGGTT GAAAGAACAA 181 AGAGAGAGAA AGAATAAAAG TAAATTGACT CAAGAATTAG TTGAAAGAAA AGTTAATATA 241 TATATATATA TATATATATA TATATACACA CACACACACA CACACACACA CACAAGAAAT 301 ACAAGCAAGA AAAGAAGAGT CACTTACAAA AATGAAGAAA GAAGGGAAAA TAACAAGGTG 361 AAAAAATATG AGAAACTGGG CAAATAAAAT GATAGAAAAT GGTATGTTTA GCCGATATTT 421 CAAGGAGGGC AAAAAGTCAC TAAAGTATAC CTAAATATAC CCTACCTGAC CCTGAGCCTA 481 TGTTACAAGC TAAGAAAGTC CTATCGCGAT CCTAAGAGTT GTATAGCAAA CTTAATGCAG 541 TGAAAATAAG TGCAAGCTTA Predicted gene structure (within gDNA segment 138656 to 136128): Exon 1 137806 137537 ( 270 n); cDNA 294 560 ( 267 n); score: 0.880 MATCH C04HBa0031H05.1- SGN-E244201- 0.880 270 0.482 C PGS_C04HBa0031H05.1-_SGN-E244201- (137806 137537) Alignment (genomic DNA sequence = upper lines): AAGAATTACA AACGAGAAAA GAAAAGAGTT ACTTACACAA ATGAAGAAAG AA-GGAAAAC 137748 ||||| |||| | | |||||| | |||||| ||||||| || |||||||||| || |||||| AAGAAATACA AGCAAGAAAA G--AAGAGTC ACTTACAAAA ATGAAGAAAG AAGGGAAAAT 351 AGCAAGGTGA AAGAATAGGA GAAACTGGGC GAGATAAAGT GATAGAAAGT GGAAGGTTTA 137688 | |||||||| || |||| || |||||||||| | ||||| | |||||||| | || | ||||| AACAAGGTGA AAAAATATGA GAAACTGGGC -AAATAAAAT GATAGAAAAT GGTATGTTTA 410 GCCGATATGT CAACGAGGGC AGAAAGTCAC TAAAGTATAC CTAAATATAC CCTACCTGAC 137628 |||||||| | ||| |||||| | |||||||| |||||||||| |||||||||| |||||||||| GCCGATATTT CAAGGAGGGC AAAAAGTCAC TAAAGTATAC CTAAATATAC CCTACCTGAC 470 TCTGAGCCTA CGTTACAAGC TAAAAAAAGT CCTATCGTGA TCCTAAGGGT TGTATAGCGA 137568 ||||||||| ||||||||| | || ||||| ||||||| || ||||||| || |||||||| | CCTGAGCCTA TGTTACAAGC T-AAGAAAGT CCTATCGCGA TCCTAAGAGT TGTATAGCAA 529 ACTTAAGGCA GTAAAAATAA GGGCAAGCTT A 137537 |||||| ||| || ||||||| | |||||||| | ACTTAATGCA GTGAAAATAA GTGCAAGCTT A 560 hqPGS_C04HBa0031H05.1-_SGN-E244201- (137806 137537) ******************************************************************************** EST sequence 6 -strand 706 n (File: SGN-E577987-) 1 AGGTGTGTGT GGACATTGAC TTTGACAATT TTGCGGAGCA CAATAACTTT CTGTTGTTCC 61 ACACCAACTC CAAATACTAC AACACTCATT GCTTTTACAT TTTCCACCAC CACCTCCCAT 121 TCCACATCGC GGATATGGAG GTGGAGGTGA TAAGGAGGCG GGGGTCGAAA GGAGGATGAG 181 GCTAGAGCAC GGAAGAAGGA GCGCCGCAAG ACGGAGGCTA TGAGGACACT ACTGAAGGTG 241 TCTAGATTAC AGAGGTAGTG GGTTCCGGGG AACCACACCC ACTAGCTTGC TGATCGTCTG 301 CGCTTTGCGC CCCATGTTTT CTTCACCTAC CACTCTCGTA TTTCAATTTT TTATGCATTG 361 GGGACAATTC CATGTCTTTT TGTTGGGGGT GGGGTAAATG GAATGTGAGT TCTAGGGTGA 421 AGTCTGAGTA TCCCCATTCA CTATCATCTT TTGGGTTTTT CTTGCCTATG TTCTTTTTCC 481 CCAAGAGACT GATTATTTTT ACTGTTGAAC CGGCATGTCT ATATCTTGTG TACATAAAAT 541 AACTCTAAAG CATGATGGCT AAAACAAAAA TGATATCCTT ATGAAATGAA AATGATGCAT 601 GACTAGAAAT AGTAATAATT GTTGAAAAAG AAGAAAGTTG ACGATTGGAA CAGGTCCAAC 661 ACGTATCTGC AGCAAGTGTG GATGAAGAAG GAAGCTGATG ATTGAA Predicted gene structure (within gDNA segment 142750 to 135238): Exon 1 142144 142135 ( 10 n); cDNA 123 132 ( 10 n); score: 0.700 Intron 1 142134 139609 (2526 n); Pd: 0.000 (s: 0), Pa: 0.922 (s: 0) Exon 2 139608 139599 ( 10 n); cDNA 133 142 ( 10 n); score: 0.800 Intron 2 139598 139015 ( 584 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.74) Exon 3 139014 138936 ( 79 n); cDNA 143 219 ( 77 n); score: 0.778 Intron 3 138935 138812 ( 124 n); Pd: 0.000 (s: 0.84), Pa: 0.000 (s: 0.82) Exon 4 138811 138465 ( 347 n); cDNA 220 564 ( 345 n); score: 0.833 Intron 4 138464 138074 ( 391 n); Pd: 0.000 (s: 0.83), Pa: 0.962 (s: 0) Exon 5 138073 138067 ( 7 n); cDNA 565 571 ( 7 n); score: 0.714 Intron 5 138066 137051 (1016 n); Pd: 0.000 (s: 0), Pa: 1.000 (s: 0) Exon 6 137050 137045 ( 6 n); cDNA 572 577 ( 6 n); score: 0.833 MATCH C04HBa0031H05.1- SGN-E577987- 0.823 459 0.650 C PGS_C04HBa0031H05.1-_SGN-E577987- (142144 142135,139608 139599,139014 138936,138811 138465,138073 138067,137050 137045) Alignment (genomic DNA sequence = upper lines): CACATCACCA GGAAATTCTG CAGAAAACTA CTCCGCAGTA GCCACTGACG GATACAACGA 142085 |||||| | CACATCGCGG .......... .......... .......... .......... .......... 132 CGGACCGTTG CACATGCAAC GGACCGTCGT AGGCATCTGT CACACCAGGT ACGTATTTCT 142025 .......... .......... .......... .......... .......... .......... 132 GTCACTTTGA ATATTAGGGC ACACACGACG GAACCTACGA CGGGGCGTCA CAAGTGTGAC 141965 .......... .......... .......... .......... .......... .......... 132 GGACCGTCAT CAGGGAACCG TCGCGCGATT AATGAAATCT ACCCGACCCG ACTCGGGTGC 141905 .......... .......... .......... .......... .......... .......... 132 AACCCGGCTG CACCCTTTTC AAAATTTGAC CGTTTATACT CCCCACCCCT CCATATTCCA 141845 .......... .......... .......... .......... .......... .......... 132 CCCCATTACT TCCAACTTCC TCTCATCTCC CCTCTCTTTT CCACTTCCAC ACTTCCCCCA 141785 .......... .......... .......... .......... .......... .......... 132 CTAATCATTA CTCCCATAAT CTCCCCAAAC CTTATCATTA TTATCTACTA GTGGGTGCTA 141725 .......... .......... .......... .......... .......... .......... 132 CTGCTATTGG TATCTACCTT GCAACCTGAA TCATTCTCCA CTTGTGTTTT CTCCATTTCC 141665 .......... .......... .......... .......... .......... .......... 132 AAGGTATGTG TCTTTAAATT TATACTCATT TCTCTTGCAT TTTGGTTTTG TAGTTGGTAT 141605 .......... .......... .......... .......... .......... .......... 132 TAGCTTAGTT CTTAGTCGTA TACTGTTTCT TTTATATGCT TATGTTGAAA CCTAGGTTCA 141545 .......... .......... .......... .......... .......... .......... 132 AAATGTTCGT ATGTGCCATG TTGATAACCC TAGGCATAGG TGATTTTGCT TGGGTAGTTT 141485 .......... .......... .......... .......... .......... .......... 132 CTTAGGTCGT TGGGATAGAC ACATATAGGT CCACAACACT ACACAACCAT GTAGGTTCAT 141425 .......... .......... .......... .......... .......... .......... 132 CAGGGATGCG TAGGGTACCC CTAAATCTAA CACTGCTACT CAGAACGAGA CTCCGATGAC 141365 .......... .......... .......... .......... .......... .......... 132 GTCCCATCGC ACACACGATG GACCGTCGTA GGGTCCGTTG CACAAGCCCT AGCACCCTGC 141305 .......... .......... .......... .......... .......... .......... 132 CCAACGACGC CTGTGACGAA CCGTTGTCTT CACGACGGTC CGTCCTACAC GACCGTCATG 141245 .......... .......... .......... .......... .......... .......... 132 ATGGTCAGAG ACCCCTCTGA TAAGGGTCTC CAAAAATTTT CTAAGTGTCC TACGACGGAC 141185 .......... .......... .......... .......... .......... .......... 132 CGTCACACCC ACGACGGTCT GTCCTGCACG ACCGTCATGA TGGTCAGAGA TCCCTCTTCT 141125 .......... .......... .......... .......... .......... .......... 132 AAGGGTCTCC CATCATTTTC TAAGTGTCCT ACGACGGACT CTTACGACGG ACCATTGTAC 141065 .......... .......... .......... .......... .......... .......... 132 TCACGACGGT CCGTCCTGCA CGACCGTCAT GATGGTCAGA GACCCCTCCT TCAGGGTTCC 141005 .......... .......... .......... .......... .......... .......... 132 TTATATATAC ATATACCAAG TATAACACGA CGGACCTCAT GACGGTCCGT CATAGTCACG 140945 .......... .......... .......... .......... .......... .......... 132 ACGAGCCGTC ATAGGTCCCG TCGTGTGATA CAGTTTCAAT ATTACTAACA CACTATTTTC 140885 .......... .......... .......... .......... .......... .......... 132 AAAGTTTAAT GTCATATGAG CTTGCCTGTC TTGCTTGCCA CTACTCATAC TAATATTGCC 140825 .......... .......... .......... .......... .......... .......... 132 CCTTTACAGG TACTATCGAC TATGGCACCC AAGCAAGACC GCACTTACGC ACGCGGGCGA 140765 .......... .......... .......... .......... .......... .......... 132 TCTAAGTCTG TCGCCCCGTC TTCCCGCATG GTCATCGGCT CTGATGATGA GCAGGACCCT 140705 .......... .......... .......... .......... .......... .......... 132 GAATACATGC CCCCAGGCAC CTCCGCCCCT TCCCGTGCTA CACATGCCCC CAGAGCCACA 140645 .......... .......... .......... .......... .......... .......... 132 CCCAAGACGG TGGCGTCCGG CGTAGTCACT GCCTCCCAGT CTGATGAGGA GCGCACACTG 140585 .......... .......... .......... .......... .......... .......... 132 ACCGGCACAC CCTCTGGGTC GGCCACAAAC GAGGAAGGAG CGTCTGGCTC CTTAGGAGTA 140525 .......... .......... .......... .......... .......... .......... 132 TCCTGGTCCG AGGAAGCTTC AGGATCTGCT GAGGTTCCCG CACCCGCCAC TGCTGCAGCA 140465 .......... .......... .......... .......... .......... .......... 132 TCGGCCTCGT TTAATGAGGC TGACAATTCA GACTCTACAT CCGCGCACCA GCCCAGGTCC 140405 .......... .......... .......... .......... .......... .......... 132 CCACCCCAGC CTCTGACCAG CCAAACCGAT GGTGTGTTGA AGGCCAGTTT CAAGTTTACT 140345 .......... .......... .......... .......... .......... .......... 132 CAGACGCGAA GTTCTTGACC GATAAAGGAG TAATGACTCG AAAACTCATC CTGGAGCGAC 140285 .......... .......... .......... .......... .......... .......... 132 GGGTACCTAC AGGAAGTCTC CTCTCGATGC CGGAGATCCA CAACACATTC ACCAGGCATC 140225 .......... .......... .......... .......... .......... .......... 132 GCTTAGAGTG GACAGCCCGT CCGTTGGGAC GATACAGCGA GGAGATGGTC CAAGAGTTCT 140165 .......... .......... .......... .......... .......... .......... 132 ACGCGTCCTA CGTAGCGAAT CTCCGATCAC AGATCGACAG GCGGACTGCT CCCGCTAAAC 140105 .......... .......... .......... .......... .......... .......... 132 AGTCCCCATT GGAGCAGGTT CTAGTCCGGG GTGTGCAGGT TGACATTTCC CTGCCCGCCA 140045 .......... .......... .......... .......... .......... .......... 132 TTCGCCGGTT CCTATACGGC GAGAGTGCAG ATGCTACTCG GACCCCCATC ACTGCCGAGT 139985 .......... .......... .......... .......... .......... .......... 132 TTGACTACCG CTGGCAGATA GTGAAGGATG GACAGTTCCT GCGAGAGCCA GCACTGAGGG 139925 .......... .......... .......... .......... .......... .......... 132 AGACCACCAA GCGGTGGATG GCCCTGCACT TATCAGTCGA CGGAGAGGGT GTCGATTGGG 139865 .......... .......... .......... .......... .......... .......... 132 TCACCGAGCC CAAGGGGGCC ATCAAGAAGG CCAACCTCAC GTTCGTCGCC AAGTTCTTGT 139805 .......... .......... .......... .......... .......... .......... 132 GGTTGCTCGT GCGTCACTGC CTTTCCCCCA CAGCTGCTAA TAACATAGTC ACCTGGGATC 139745 .......... .......... .......... .......... .......... .......... 132 GAGCAGTGCT GATGGCGGCG ATGATAGCCG GCTTCGAGGT GGACTATGCA TGGCTTCTCT 139685 .......... .......... .......... .......... .......... .......... 132 AGGCAGGCAT GCACGAGAGG GCATTCAAGG TCACTACCAC CTACCCCTTT CCGTGCATGA 139625 .......... .......... .......... .......... .......... .......... 132 TCTTTGCCCT TTGCAGATCT GTAGGTGTGC CCATATGGCA CATAGATCAG TTGAGGACCC 139565 || | | |||| .......... ......ATAT GGAGGT.... .......... .......... .......... 142 CGCCGGGTAC CATTGACGTC GGCCTCATCA GAGACGAGGC CAATGAGTTG GCCCCACGTC 139505 .......... .......... .......... .......... .......... .......... 142 GAGGGCCCCG TCCAGATCTG CCACCACTAT CTGATGATCT TGCGGAAACG GTGGCCCAGG 139445 .......... .......... .......... .......... .......... .......... 142 CCCGCACAGC TACACAGGCA TCCACAGACA CTACCCCGAT CGAGTCTATC CCGGGTAGTA 139385 .......... .......... .......... .......... .......... .......... 142 GCACAGCCCC TCTATCGACA CCGGCCTCGC TTGCTCGAGT CCAAAAACAG GAGGCACAAA 139325 .......... .......... .......... .......... .......... .......... 142 TGGCCACTCT TCTGCATCAT ATCCAGCTGT GGATGCAGAA GTCTATTGCT GAGTCTGAAG 139265 .......... .......... .......... .......... .......... .......... 142 CGCGTATGGA GAGGCAGATG CAGCGGAAGA TTGCTGAGGT TAACCAGCGC CTAGATGCCT 139205 .......... .......... .......... .......... .......... .......... 142 TTGAATTGAG AGTATTAGCT CGACCAGCCC TTCCGATAGA TGTGTCGACT CTTCAGGCTG 139145 .......... .......... .......... .......... .......... .......... 142 CAGTCGACAG TCTTCGTGCA GACATCGACA CGATTCTAGA GGCAAGAGTG CCGGAGTCTG 139085 .......... .......... .......... .......... .......... .......... 142 TCGAGCCTGC TGAGGATACT GTATTGGCGG CCCTGTTTCC TACTCCAGAC ATTCCCCTAT 139025 .......... .......... .......... .......... .......... .......... 142 CTTCCCCGAG AGAGAGTGCC AA-GAGGCGG AGGGGTCGAT AAGAGGATGA GGCGCGAGCA 138966 ||| ||| || ||||| | |||||||| | |||||||| ||| ||||| .......... GGAG-GTGAT AAGGAGGC-G -GGGGTCGAA AGGAGGATGA GGCTAGAGCA 189 AGGAAGAAGG AGCGCCGAGA GATGGAGGCC GCGAGGAGAG CCTCACTTGC TGAGGCGGAG 138906 ||||||||| ||||||| | || |||||| CGGAAGAAGG AGCGCCGCAA GACGGAGGCT .......... .......... .......... 219 GCACACCAGA TCAGAGCATC ACAGATAGCG GTTGGGGCGT CTAGCTCCCG CACTGTAGAG 138846 .......... .......... .......... .......... .......... .......... 219 ACAGTAGGAG GCACTACTGA GGGTGCGGTT GTTGCTGAGG ACATCACTTA GGGTGTCTAG 138786 ||||| ||| ||| | ||||||||| .......... .......... .......... ....ATGAGG ACACTACTGA AGGTGTCTAG 245 ATTGCAGAGG ATGTGGGTTC TGGGAAACCA GACCCACCAA CTTGTTGATC AACGGCGCTA 138726 ||| |||||| |||||||| ||| ||||| |||||| | |||| ||||| | ||||| ATTACAGAGG TAGTGGGTTC CGGGGAACCA CACCCACTAG CTTGCTGATC GTCTGCGCTT 305 TGAGCCACAG GTTTGCTTCA CCTACCCCTC TAATCTTTAG ATATTTTTTT TATGCATTGG 138666 || ||| || |||| ||||| |||||| ||| | | ||| | | ||||| |||||||||| TGCGCCCCAT GTTTTCTTCA CCTACCACTC TCGTATTT-C A-A--TTTTT TATGCATTGG 361 GGACAATTGC ATGCTTTTTT GTT-GGGGTG GGGTAAATGG AAAGTGAGTG TTAGGGTGAA 138607 |||||||| | ||| ||||| ||| |||||| |||||||||| || |||||| ||||||||| GGACAATTCC ATGTCTTTTT GTTGGGGGTG GGGTAAATGG AATGTGAGTT CTAGGGTGAA 421 GTCTGAGTAG CCCAACTCAC TATCCTTTTT TGGGATTTTC TTGCCTGTGT TCTTTTTCCC 138547 ||||||||| ||| | |||| |||| | ||| |||| ||||| |||||| ||| |||||||||| GTCTGAGTAT CCCCATTCAC TATCATCTTT TGGGTTTTTC TTGCCTATGT TCTTTTTCCC 481 CAATAGACTG ATTACTTTTT CTGTTGAACC GGCACGT-TA TATCTTTTGT ACATAGTTTA 138488 ||| |||||| |||| |||| |||||||||| |||| || || |||||| ||| ||||| || CAAGAGACTG ATTATTTTTA CTGTTGAACC GGCATGTCTA TATCTTGTGT ACATAAAATA 541 ACTCTGAAGC ATGATGGCTA AAATGATATC CCGATAAAAC TGGAAAAGGT TGCATGAAAA 138428 ||||| |||| |||||||||| ||| ACTCTAAAGC ATGATGGCTA AAA....... .......... .......... .......... 564 GGCGTAGTAA CTGATAATTG TGTGGATCTA AACATGAAAT AGAGTTACAC TATTGCACTA 138368 .......... .......... .......... .......... .......... .......... 564 CCCTAAATCT TCAAGTCGAA CTAGGTGTCT GATAATCTGG TATAGTGATG AGATGTCAAG 138308 .......... .......... .......... .......... .......... .......... 564 TGAGTGTGAG GAAAGTTGAA TAGTCCACTA CTGATACTGA GCTAGAACTT GCCTGGTTAG 138248 .......... .......... .......... .......... .......... .......... 564 TCCTGCTAAA AGTAAGTTGT AACAGACAAT TAGGAAAGGA TCATAGGCCC TTATTCAATA 138188 .......... .......... .......... .......... .......... .......... 564 TAGCCCATTT CTAGCCTAAA TAAAAGAAAC CAAATGAAAG TTATCCTTCT TTGATCCAAA 138128 .......... .......... .......... .......... .......... .......... 564 TAATTTGAGC TTAAAATTAG TCCTTTCTTT TTCATCCCAA CTGATCTTTT CTAGGAACAA 138068 || || .......... .......... .......... .......... .......... ....CAAAAA 570 TATGTTGGCC CTGGTCCCTC CTTGGACATG TGCACCTCAG CTTATGCCAA AAGCATAAGT 138008 | T......... .......... .......... .......... .......... .......... 571 TGAGGGTGGC TAATGTATAA ACAACCTTCG TTATGTCCCT GACCCGACTT TGGGTATTGT 137948 .......... .......... .......... .......... .......... .......... 571 GTACCTTGAC TCATGGCAAA ACCATGAGTT GAGGGTGGTT GTTTTGAGGA ATGCTCTGGA 137888 .......... .......... .......... .......... .......... .......... 571 AAGTGGGGTT GAAAGAACAA AGAGAGAGAA AGAACAAAAG TAAAGTGACT CAAGAACTCT 137828 .......... .......... .......... .......... .......... .......... 571 TTAAAAAAAA GAGAAATATT TAAGAATTAC AAACGAGAAA AGAAAAGAGT TACTTACACA 137768 .......... .......... .......... .......... .......... .......... 571 AATGAAGAAA GAAGGAAAAC AGCAAGGTGA AAGAATAGGA GAAACTGGGC GAGATAAAGT 137708 .......... .......... .......... .......... .......... .......... 571 GATAGAAAGT GGAAGGTTTA GCCGATATGT CAACGAGGGC AGAAAGTCAC TAAAGTATAC 137648 .......... .......... .......... .......... .......... .......... 571 CTAAATATAC CCTACCTGAC TCTGAGCCTA CGTTACAAGC TAAAAAAAGT CCTATCGTGA 137588 .......... .......... .......... .......... .......... .......... 571 TCCTAAGGGT TGTATAGCGA ACTTAAGGCA GTAAAAATAA GGGCAAGCTT ATGGCAATAG 137528 .......... .......... .......... .......... .......... .......... 571 GTATGAATGA GTGTGACTTC GTTCTGAGAG CGAGTGTTGA AATGTAATCC TTATACTCAA 137468 .......... .......... .......... .......... .......... .......... 571 ACTGAAATCA TTGTGTGAAA AATGAGGATT TTGTTCTAAA GTGAGGACAC TAGTTGCTAT 137408 .......... .......... .......... .......... .......... .......... 571 ACCGGAATTG TTAGCCTCTC GGTGAGAAAT TGAAGAGGAT AGGTGTTAGT GCGTGGTGAG 137348 .......... .......... .......... .......... .......... .......... 571 TCTGTGTCAT GTTCGAATCC CACAAAATTC AAGCCTAATA GTGATAGCAT GCATAGATTT 137288 .......... .......... .......... .......... .......... .......... 571 GATGAGATTA ATCGGGATTG ATAGCCAAAT GATTGCAAAG GATAAAAACA TGAATACTAT 137228 .......... .......... .......... .......... .......... .......... 571 TGTACAAAGA TTGTGTAGTG AGTCATAGTG CTTCGCTTGA GGACAAACAA CAAATTTAAG 137168 .......... .......... .......... .......... .......... .......... 571 TTGAGGGTGT TGATATACCG TGGTTTCACA GTATAATTAA TACTTTTTCC TTAAGTTTAG 137108 .......... .......... .......... .......... .......... .......... 571 TGTATTTGAA AGCCCTTTTT GTGCTAATTT TGATATAAGT TTCTCTTTGT TTTGCAGGAA 137048 || .......... .......... .......... .......... .......... .......GAT 574 ATC 137045 ||| ATC 577 hqPGS_C04HBa0031H05.1-_SGN-E577987- (139014 138936,138811 138465) ******************************************************************************** EST sequence 80 +strand 547 n (File: SGN-E243970+) 1 CCCCCTCGAG AGAGTGCCAA GAGGCGTAGG GGCCGATCAG AGGATGAGGC ACAAGCAAAG 61 AAGAAGGAGC GCCGAGAGAT GGAGGCTGCG AGGAGAGCCT CGCTGAGACG GAGGCACACC 121 AAATCAGAGC ATCGCAGATA GCGGATGGGG CGTCTAGCTC CCGCACTGTA GAGATAGCAA 181 GAGGCACTAC TGATGGTGCG GTTGTTGCTG AGGACATCAC TGAGGGTGTC CAGATTGCTG 241 AGGACACCAC TGAGGGTGTC CAGATTGCAG AGGATGTGGG TTCCAGGAAA CCGGACCCAC 301 CATCTTGTTA AATCGACGGT GCTTTGCGCC ACAGGTTTGC TTCACCTACC ACTCTAATAT 361 TTAGATTTTT TATGCATTGG GGACAGTTGC ATGCTTTTTT GTTGGGGGTG GGGTAAATGG 421 AAAGTGAGTG TTAGGGTGAA GTCTGAGTAG CCCAACTCAC TATCCTCTTT TGGGGTTTTC 481 TTGCCTGTGT TCTTTTTCCC CAAAAGACTG ATTACTTTTT TTGTTGAACC GACACGTTAT 541 ATATTTT Predicted gene structure (within gDNA segment 142930 to 137647): Exon 1 139021 138500 ( 522 n); cDNA 2 547 ( 546 n); score: 0.762 MATCH C04HBa0031H05.1- SGN-E243970+ 0.762 522 0.954 C PGS_C04HBa0031H05.1-_SGN-E243970+ (139021 138500) Alignment (genomic DNA sequence = upper lines): CCCCGAGAGA GAGTGCCAAG AGGCGGAGGG GTCGATAAGA GGATGAGGCG CGAGCAAGGA 138962 |||| |||| |||||||||| ||||| |||| | |||| ||| ||||||||| | ||||| || CCCCTCGAGA GAGTGCCAAG AGGCGTAGGG GCCGATCAGA GGATGAGGCA CAAGCAAAGA 61 AGAAGGAGCG CCGAGAGATG GAGGCCGCGA GGAGAGCCTC ACTTGCTGAG GCGGAGGCAC 138902 |||||||||| |||||||||| ||||| |||| ||||||||| | |||||| ||||||||| AGAAGGAGCG CCGAGAGATG GAGGCTGCGA GGAGAGCCT- -C--GCTGAG ACGGAGGCAC 117 ACCAGATCAG AGCATCACAG ATAGCGGTTG GGGCGTCTAG CTCCCGCACT GTAGAGACAG 138842 |||| ||||| |||||| ||| ||||||| || |||||||||| |||||||||| ||||||| || ACCAAATCAG AGCATCGCAG ATAGCGGATG GGGCGTCTAG CTCCCGCACT GTAGAGATAG 177 TAGGAGGCAC TACTGAGGGT GCGGTTGTTG CTGAGGACAT CACTTA-GG- GT---G--T- 138790 | ||||||| |||||| ||| |||||||||| |||||||||| |||| | || || | | CAAGAGGCAC TACTGATGGT GCGGTTGTTG CTGAGGACAT CACTGAGGGT GTCCAGATTG 237 CT-A-G---- -A-T-----T G--C--A--G -AG--GATGT GGGTTCTGGG AAACCAGACC 138752 || | | | | | | | | | || ||||| |||||| || ||||| |||| CTGAGGACAC CACTGAGGGT GTCCAGATTG CAGAGGATGT GGGTTCCAGG AAACCGGACC 297 CACCAACTTG TT-GATCAAC GGCGCTATGA GCCACAGGTT TGCTTCACCT ACCCCTCTAA 138693 ||||| |||| || ||| || || ||| || |||||||||| |||||||||| ||| |||||| CACCATCTTG TTAAATCGAC GGTGCTTTGC GCCACAGGTT TGCTTCACCT ACCACTCTAA 357 TCTTTAGATA TTTTTTTTAT GCATTGGGGA CAATTGCATG CTTTTTTGTT -GGGGTGGGG 138634 | ||||| | |||||||| |||||||||| || ||||||| |||||||||| ||||||||| TATTTAG--A --TTTTTTAT GCATTGGGGA CAGTTGCATG CTTTTTTGTT GGGGGTGGGG 413 TAAATGGAAA GTGAGTGTTA GGGTGAAGTC TGAGTAGCCC AACTCACTAT CCTTTTTTGG 138574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| TAAATGGAAA GTGAGTGTTA GGGTGAAGTC TGAGTAGCCC AACTCACTAT CCTCTTTTGG 473 GATTTTCTTG CCTGTGTTCT TTTTCCCCAA TAGACTGATT ACTTTTTCTG TTGAACCGGC 138514 | |||||||| |||||||||| |||||||||| ||||||||| ||||||| || |||||||| | GGTTTTCTTG CCTGTGTTCT TTTTCCCCAA AAGACTGATT ACTTTTTTTG TTGAACCGAC 533 ACGTTATATC TTTT 138500 ||||||||| |||| ACGTTATATA TTTT 547 hqPGS_C04HBa0031H05.1-_SGN-E243970+ (139021 138500) ******************************************************************************** EST sequence 10 -strand 715 n (File: SGN-E578194-) 1 AGTTTCAAGT CTACTCCGAC GCCAAGTTCC TGACAGATAA AGGAGTGATG ACTCGACCAC 61 TCACTTTGGA GAGGGGGGGA CTTACAAGGA GTCTCCCGAC AATGCCTGAG ATTTACAACC 121 TCTTCACCAG GCATCTCTTG GAGTTGACAG CACGTCCATT GGGACGATAC AGCGAAGAAA 181 TGGTCCGAGA GTTCTACGCA TCCTACGTAG CGACTCTTCG ATCACAGATC GATAGGCAGG 241 ATGCCCCCGC TAAAAAGGCC CCGCTGGAGC AGGTTTGAGT CCGGGGCGTA CAGGTTGACA 301 TTTCCCTGCC AGCCATCCGC CGGTTTCTAT ACAACCAGAG TGATGAAGCA ACTCGGACCC 361 CCCTCACTAC CGAGTTTGAT TACTGCTGGC AGATATATAA GGATGGCAAG TTCTTGCGCG 421 AGCCATCACT GAGAGAGACC ACGAAGAGGT TAATGGCCCT GCACCTGTCA GTAGATGGAG 481 AGGGTGCCGA TTGGGTGACT GATCCAAAGG GGGCCATCAA GAAGGCCAAC CTCACGTTCA 541 CGGCAAAGTT CTTGTGGCTT CTTGTCCGTC ACTGCCTTTC CCCCACAACT GCTGATAATA 601 TTGTTTCCTG GGATCGAGCA GTGTCGATGG CGGCGATGAT ATCCGGATTC GAGGTGGACT 661 TTGTATGTCT TCTCCAGGCA GTCATGCACG TGAAGACATT CAAGGTCACT ACTAC Predicted gene structure (within gDNA segment 145523 to 138379): Exon 1 140359 139645 ( 715 n); cDNA 1 715 ( 715 n); score: 0.839 MATCH C04HBa0031H05.1- SGN-E578194- 0.839 715 1.000 C PGS_C04HBa0031H05.1-_SGN-E578194- (140359 139645) Alignment (genomic DNA sequence = upper lines): AGTTTCAAGT TTACTCAGAC GCGAAGTTCT TGACCGATAA AGGAGTAATG ACTCGAAAAC 140300 |||||||||| ||||| ||| || |||||| |||| ||||| |||||| ||| |||||| || AGTTTCAAGT CTACTCCGAC GCCAAGTTCC TGACAGATAA AGGAGTGATG ACTCGACCAC 60 TCATCCTGGA GCGACGGGTA CCTACAGGAA GTCTCCTCTC GATGCCGGAG ATCCACAACA 140240 ||| |||| | | ||| | | |||| | | |||||| | ||||| ||| || ||||| TCACTTTGGA GAGGGGGGGA CTTACAAGGA GTCTCCCGAC AATGCCTGAG ATTTACAACC 120 CATTCACCAG GCATCGCTTA GAGTGGACAG CCCGTCCGTT GGGACGATAC AGCGAGGAGA 140180 |||||||| ||||| ||| |||| ||||| | ||||| || |||||||||| ||||| || | TCTTCACCAG GCATCTCTTG GAGTTGACAG CACGTCCATT GGGACGATAC AGCGAAGAAA 180 TGGTCCAAGA GTTCTACGCG TCCTACGTAG CGAATCTCCG ATCACAGATC GACAGGCGGA 140120 |||||| ||| ||||||||| |||||||||| ||| ||| || |||||||||| || |||| | TGGTCCGAGA GTTCTACGCA TCCTACGTAG CGACTCTTCG ATCACAGATC GATAGGCAGG 240 CTGCTCCCGC TAAACAGTCC CCATTGGAGC AGGTTCTAGT CCGGGGTGTG CAGGTTGACA 140060 ||| ||||| |||| || || || |||||| ||||| ||| |||||| || |||||||||| ATGCCCCCGC TAAAAAGGCC CCGCTGGAGC AGGTTTGAGT CCGGGGCGTA CAGGTTGACA 300 TTTCCCTGCC CGCCATTCGC CGGTTCCTAT ACGGCGAGAG TGCAGATGCT ACTCGGACCC 140000 |||||||||| ||||| ||| ||||| |||| || | |||| || || || |||||||||| TTTCCCTGCC AGCCATCCGC CGGTTTCTAT ACAACCAGAG TGATGAAGCA ACTCGGACCC 360 CCATCACTGC CGAGTTTGAC TACCGCTGGC AGATAGTGAA GGATGGACAG TTCCTGCGAG 139940 || ||||| | ||||||||| ||| |||||| ||||| || |||||| || ||| |||| | CCCTCACTAC CGAGTTTGAT TACTGCTGGC AGATATATAA GGATGGCAAG TTCTTGCGCG 420 AGCCAGCACT GAGGGAGACC ACCAAGCGGT GGATGGCCCT GCACTTATCA GTCGACGGAG 139880 ||||| |||| ||| |||||| || ||| ||| |||||||| |||| | ||| || || |||| AGCCATCACT GAGAGAGACC ACGAAGAGGT TAATGGCCCT GCACCTGTCA GTAGATGGAG 480 AGGGTGTCGA TTGGGTCACC GAGCCCAAGG GGGCCATCAA GAAGGCCAAC CTCACGTTCG 139820 |||||| ||| |||||| || || || |||| |||||||||| |||||||||| ||||||||| AGGGTGCCGA TTGGGTGACT GATCCAAAGG GGGCCATCAA GAAGGCCAAC CTCACGTTCA 540 TCGCCAAGTT CTTGTGGTTG CTCGTGCGTC ACTGCCTTTC CCCCACAGCT GCTAATAACA 139760 || ||||| ||||||| | || || |||| |||||||||| ||||||| || ||| |||| | CGGCAAAGTT CTTGTGGCTT CTTGTCCGTC ACTGCCTTTC CCCCACAACT GCTGATAATA 600 TAGTCACCTG GGATCGAGCA GTGCTGATGG CGGCGATGAT AGCCGGCTTC GAGGTGGACT 139700 | || |||| |||||||||| ||| ||||| |||||||||| | |||| ||| |||||||||| TTGTTTCCTG GGATCGAGCA GTGTCGATGG CGGCGATGAT ATCCGGATTC GAGGTGGACT 660 ATGCATGGCT TCTCTAGGCA GGCATGCACG AGAGGGCATT CAAGGTCACT ACCAC 139645 || ||| || |||| ||||| | |||||||| || | |||| |||||||||| || || TTGTATGTCT TCTCCAGGCA GTCATGCACG TGAAGACATT CAAGGTCACT ACTAC 715 hqPGS_C04HBa0031H05.1-_SGN-E578194- (140359 139645) ******************************************************************************** EST sequence 71 +strand 594 n (File: SGN-E350708+) 1 GGGGATTTAG TGCTTCTATT CAATTCCAGA TTGCGCTTGT TTCCAGGCAA ACTCAAGTCC 61 AAATGGACTG GTCCTTACAC GGTTACCCAA CTATTCCCTC ATGGAGCAGT TGAGTTGGAA 121 ACGAAGGAGG GTGTGCGGTT CAAGGTGAAT GGACAGCGCA TAAAAATCTA TCTCGGACAT 181 GCTGAATCGG CGAATGAAGT GATCGAGGCA TACCATCTTG ATGAAGTCTG AGTAATCAAG 241 TGGCCCCAGT CGTGCCGCGA CATTAAATCA GGCGCTTGTT GGGAGGCAAC CCAATACTTA 301 TCGTCTTTTT AATAATGGTA GCATTTTTTT CTATAAATGG GTTTTAAATT TGCAGGCACA 361 TCACCAAGAA ATTCTGCAGA AAACTACTCC GCAGTAGCCA CTGACGGATA CAACAACGGA 421 CCGTCGTATG CATCCGTCAC ACCAGGTATG TATTTCTGTC ATTTTTGAAA TTAGGGCGCA 481 TACGACGGAA CCTACGATGG GGCGTCGCAA GTGCGATGGA CCGTCGTCGG GGAACCGTTG 541 CGCGATTAAT GAAATCTNAC CGACCCACCC GGCTGGACCT TTTCAAATCT GACC Predicted gene structure (within gDNA segment 145007 to 139677): Exon 1 142499 141909 ( 591 n); cDNA 1 572 ( 572 n); score: 0.838 MATCH C04HBa0031H05.1- SGN-E350708+ 0.838 591 0.995 C PGS_C04HBa0031H05.1-_SGN-E350708+ (142499 141909) Alignment (genomic DNA sequence = upper lines): GGAGATTTGG TACTTGTAGA CAGTTCTGGG GTGC-CTTGT CTTCCAGGCA GGCTCAAGAT 142441 || ||||| | | ||| || || ||| | ||| ||||| ||||||||| |||||| GGGGATTTAG TGCTTCTATT CAATTCCAGA TTGCGCTTGT -TTCCAGGCA AACTCAAGTC 59 CAAATGGACT GGCCCTTACT TGATTACCCA AGTATTCCCT CATGGGGCAG TTGAGTTAAA 142381 |||||||||| || |||||| | ||||||| | |||||||| ||||| |||| ||||||| | CAAATGGACT GGTCCTTACA CGGTTACCCA ACTATTCCCT CATGGAGCAG TTGAGTTGGA 119 AGCCAAGGAG GGAGTGCGGT TTAAGAAGAA TAGAGATAGA ATAAAACTCT ATTTTGGGCA 142321 | | |||||| || ||||||| | ||| ||| | || | | |||||| ||| || | || || AACGAAGGAG GGTGTGCGGT TCAAGGTGAA TGGACAGCGC ATAAAAATCT ATCTCGGACA 179 TAGAGCATCG GGGAATAAAG TGATAGTGGC ATGCCATCTT GATGAAGTCT GAGTAATCAA 142261 | | |||| | |||| ||| |||| | ||| || ||||||| |||||||||| |||||||||| TGCTGAATCG GCGAATGAAG TGATCGAGGC ATACCATCTT GATGAAGTCT GAGTAATCAA 239 GTGTACCCAG TCGTGCCGCG ACATTAAATC TGGCGCTTGT TGGGAGGCAA CCCAATACTT 142201 ||| ||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| GTGGCCCCAG TCGTGCCGCG ACATTAAATC AGGCGCTTGT TGGGAGGCAA CCCAATACTT 299 ATCGTCTTTT TAATAATGGT AGCA-TTTTT TCTATAAATG GGTTTTAAAT TTGCAGGCAC 142142 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ATCGTCTTTT TAATAATGGT AGCATTTTTT TCTATAAATG GGTTTTAAAT TTGCAGGCAC 359 ATCACCAGGA AATTCTGCAG AAAACTACTC CGCAGTAGCC ACTGACGGAT ACAACGACGG 142082 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| ATCACCAAGA AATTCTGCAG AAAACTACTC CGCAGTAGCC ACTGACGGAT ---------- 409 ACCGTTGCAC ATGCAACGGA CCGTCGTAGG CATCTGTCAC ACCAGGTACG TATTTCTGTC 142022 | || | ||||||| |||||||| | |||| ||||| |||||||| | |||||||||| A------CA- A--CAACGGA CCGTCGTATG CATCCGTCAC ACCAGGTATG TATTTCTGTC 460 ACTTTGAATA TTAGGGCACA CACGACGGAA CCTACGACGG GGCGTCACAA GTGTGACGGA 141962 | ||| | | ||||||| || ||||||||| ||||||| || |||||| ||| ||| || ||| ATTTTTGAAA TTAGGGCGCA TACGACGGAA CCTACGATGG GGCGTCGCAA GTGCGATGGA 520 CCGTCATCAG GGAACCGTCG CGCGATTAAT GAAATCTACC CGACCCGACT CGG 141909 ||||| || | |||||||| | |||||||||| ||||||| | |||||| || ||| CCGTCGTCGG GGAACCGTTG CGCGATTAAT GAAATCTNAC CGACCC-ACC CGG 572 hqPGS_C04HBa0031H05.1-_SGN-E350708+ (142499 141909) ******************************************************************************** EST sequence 14 -strand 589 n (File: SGN-E351864-) 1 TTTATGGTAA CTAGTAGCCT GATGCAAATG CTCACTGCTA GAGGTTTGTT TTCAGGGCTA 61 CCGCCTGAGG ATCCACATGC CCAAATAGCT AAGGTAAGGG CAGTGTGTAA ATGTAGTGTG 121 GGGAGGCCTG ACATGGATCT AGATGTAATA GGGCTCACAG TGTTTCCTCT CTCACTGAAG 181 GGAGAGGCTC CTATATGGTT CACTGAGCTT CCATGCAACT CAATCTTCAC TTGGAACCAA 241 TTAAGAGATG TTTTCTTGGC ACTCTACTAT CCAATCTCGA AGAAACTAAA CCACAAAGAC 301 AGAGTAAATA ATTTTGTGGC ACTACCAGTA GAGTCAGTTA GTAGTTCTTG GGATAGATCA 361 CCTCATTCTT GAGAAGTGTT CCAAATCACT GTATAGATGA TGAGTCACGG AAGAAATAGT 421 TCTATCAGGG ACAGGATGAT AGTAACAAAG AAGTGTTGGA CATTATAGAA GGTGGATCTT 481 ATGGAGAATG CCCTTATGCT GAGATCGCTT AAAAATTAGT GAAAATCTCC CGGAATAACA 541 AAGTTTGGAG TACTAGGAAG TCTGATACAG GGAGAAACAC CTTCGAAGT Predicted gene structure (within gDNA segment 145235 to 141546): Exon 1 144625 144040 ( 586 n); cDNA 1 585 ( 585 n); score: 0.886 MATCH C04HBa0031H05.1- SGN-E351864- 0.886 586 0.995 C PGS_C04HBa0031H05.1-_SGN-E351864- (144625 144040) Alignment (genomic DNA sequence = upper lines): TTTATGGTAA CTAGTAGTCT GATGCAAATG CTCACTGCCA GAGGTTTGTT TTCAGGGCTA 144566 |||||||||| ||||||| || |||||||||| |||||||| | |||||||||| |||||||||| TTTATGGTAA CTAGTAGCCT GATGCAAATG CTCACTGCTA GAGGTTTGTT TTCAGGGCTA 60 CCTTCTGAGG ATCCACATGC CCATATAGCT AAGGTAAGGG CAGTGTGTAA AAGTTGTGTG 144506 || |||||| |||||||||| ||| |||||| |||||||||| |||||||||| | || ||||| CCGCCTGAGG ATCCACATGC CCAAATAGCT AAGGTAAGGG CAGTGTGTAA ATGTAGTGTG 120 GGGAGGCCTG ATTTGGATCT AGATGTAATA GGTCTCAGAG TGTTTCCTCT CTCACTGACG 144446 |||||||||| | ||||||| |||||||||| || |||| || |||||||||| |||||||| | GGGAGGCCTG ACATGGATCT AGATGTAATA GGGCTCACAG TGTTTCCTCT CTCACTGAAG 180 GGAGAGGCTG CTATGTGGTT TACTGAGCTC CCATACAACT CCATTTTCAC TTGGAACCAA 144386 ||||||||| |||| ||||| |||||||| |||| ||||| | || ||||| |||||||||| GGAGAGGCTC CTATATGGTT CACTGAGCTT CCATGCAACT CAATCTTCAC TTGGAACCAA 240 CTACGGGATG TCTTCTTAGC ACGCTACTAT CCGGTCTCCA AGAAATTAAT CCACAAAGAC 144326 || | |||| | ||||| || || ||||||| || |||| | ||||| ||| |||||||||| TTAAGAGATG TTTTCTTGGC ACTCTACTAT CCAATCTCGA AGAAACTAAA CCACAAAGAC 300 AGGGTGAATA ACTTTGTGGC ACTACCAAGA GAGTCAGTTA GTAGTTCTTG GGATAAATTC 144266 || || |||| | |||||||| ||||||| | |||||||||| |||||||||| ||||| | || AGAGTAAATA ATTTTGTGGC ACTACCAGTA GAGTCAGTTA GTAGTTCTTG GGATAGA-TC 359 ACCTCATTCT TGAGAAGTGT CCCAAATCAC CGTATTAATG ATGAGTCACT AAAGGAATAC 144206 |||||||||| |||||||||| ||||||||| |||| ||| ||||||||| ||| |||| ACCTCATTCT TGAGAAGTGT TCCAAATCAC TGTATAGATG ATGAGTCACG GAAGAAATAG 419 TTCTATAGGG GACAGGATGA TAACAATAAA GCGGTGTTGG ACACTATAGC AGGTGGATCT 144146 |||||| || |||||||||| || || ||| | ||||||| ||| ||||| |||||||||| TTCTATCAGG GACAGGATGA TAGTAACAAA GAAGTGTTGG ACATTATAGA AGGTGGATCT 479 TATGGAGAAT GTCGTTATGC TGAGATTGCT GAGAAATTAG AGAAAATCTC CCGTAACAAA 144086 |||||||||| | | |||||| |||||| ||| | ||||||| ||||||||| ||| || || TATGGAGAAT GCCCTTATGC TGAGATCGCT TAAAAATTAG TGAAAATCTC CCGGAATAAC 539 AAAGCTTGGA GTACGAGGAA GTCCGATACA AGGAGAAACA CCTTCG 144040 |||| ||||| |||| ||||| ||| |||||| ||||||||| |||||| AAAGTTTGGA GTACTAGGAA GTCTGATACA GGGAGAAACA CCTTCG 585 hqPGS_C04HBa0031H05.1-_SGN-E351864- (144625 144040) ******************************************************************************** EST sequence 60 -strand 783 n (File: SGN-E546250-) 1 GACAAAACAA CCAAAAGCAG CAGCAACGAC AGCCGATGAG GAGAGCAACA CAAGCTCCAA 61 CAACCAAGCA TCTCTAGGCG AGACTCTGAA CAAGTGAGCT CCGGTGAAAC TTTTGAAATT 121 TTGAGTTTGT CAAAGACAGA TCTGTAACAG ACCCGTCCAG GAAATTTGTC TAAAGATGAA 181 CGCGGAAGTT TTTGAGCAAA AACTGCAGAA AAGTACCACC TACGGAGCTT GTAACGGTCC 241 GTCGTGCCTG TAACGGTCCA TAGGTGGCAT CGTAGTGAAG CTGCTGAAGG AAGATGGGGA 301 AGTCTGACCA AGTGTGGGTT ACGGAGTGCG TGACGGACCG TCGTAACCAT GACGGTCCGT 361 CCTGCTGGTT CGTCGTGAAG ATCAGAGAAG TAGTCAGAGA AATTATGCAT GTGACAATCC 421 GTCATACCTG CCGCCGAGCG TAATGAAGAC AGCAGCAGAA GAATTCGCCA AGTATGGGAC 481 GACGGAGTCC ATGATGACCC GTCGTGACCA CGACGACCCG TCCCGAGGTC CGTCGACCAA 541 ATCGCGTTTC GACAGATTTT CAACAAATAG AGTCCTTCTT TGATTAGATT TTTATTTTTT 601 AAAAAAATAG TTCAAAAAAC CTCATTTTTG GGGTTAGACT CTTAGTTATT AGACACTTTT 661 ATGTTATATT CTTTGTGAGG AGATTATTTT TATTATTACA CTTTTCTCTG GAGTTGATTG 721 TTGGTGATTT TGTCGATTAA TCAAGTAAAT TTCTGAATTT TATTTTTTCT CAAAAAAAAA 781 AAA Predicted gene structure (within gDNA segment 149754 to 141749): Exon 1 147481 147471 ( 11 n); cDNA 150 160 ( 11 n); score: 0.545 Intron 1 147470 146499 ( 972 n); Pd: 0.593 (s: 0), Pa: 0.998 (s: 0.79) Exon 2 146498 146258 ( 241 n); cDNA 161 402 ( 242 n); score: 0.822 Intron 2 146257 146209 ( 49 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.78) Exon 3 146208 145925 ( 284 n); cDNA 403 685 ( 283 n); score: 0.778 PPA cDNA 772 783 MATCH C04HBa0031H05.1- SGN-E546250- 0.798 536 0.685 C PGS_C04HBa0031H05.1-_SGN-E546250- (147481 147471,146498 146258,146208 145925) Alignment (genomic DNA sequence = upper lines): GAGCTTTTAA GGTGATAGCT TGGTCCATCT GTACCAGGGA TATCCTTAAT TCTCCATCTG 147422 || | | | | GACCCGTCCA G......... .......... .......... .......... .......... 160 TCAACCCAGC TGGGTTACAA GCATCTCCAT TTCACCAGTT GGGGCCTGGG GAGGAATTTG 147362 .......... .......... .......... .......... .......... .......... 160 GTTGCCCTAG CAACTGCTTC TCCTCGTCCC TGACCACTGT TCCTCTTTGT GTTCATTTTT 147302 .......... .......... .......... .......... .......... .......... 160 TTTGAAAAAG TAGAATTGAT GTTCGATAAG CTCATAACAC CAAGGAATCA GACATTAGAG 147242 .......... .......... .......... .......... .......... .......... 160 AAGGCACGAT AAGATAGAAG AAGGGAATTT TCCTACGCAT CATGCAGTCT CTAATTTAGG 147182 .......... .......... .......... .......... .......... .......... 160 ATAGTGGTGC ACTTCACTAC CATGACTTAG AAACTACTCA ATGTGGTTGA TGTGAACTTA 147122 .......... .......... .......... .......... .......... .......... 160 TTATACTCGG AATTTAACCT AATTCTTTGA TACCAACTTG GTCATGACCG GAATCTAGAC 147062 .......... .......... .......... .......... .......... .......... 160 CCCAGACGAT ATCAGCGTCG TTGACCTCTC TGAGGTCGCA GACAAGCCTA CTTACGTCAT 147002 .......... .......... .......... .......... .......... .......... 160 TCTTACTTCA TCTGGATTAA TTATAGCAGA AAATTTGAAA CTTTTTGTTT CTTAACATAC 146942 .......... .......... .......... .......... .......... .......... 160 TAATAATTCT ATTAAATTCA TAATTTTTCA TCCTCAACCA TCTAACATTA ATATAATCAA 146882 .......... .......... .......... .......... .......... .......... 160 ATGAAAGAAA TAGTTTAATA TAGCATTAAA TGTATACTTG CCAAAATGGC ACGATACGAT 146822 .......... .......... .......... .......... .......... .......... 160 GTCTGAAGAA AAATAGAAAG AAACACTAGT GGAACATGCT CCACTAACTA TAGCCTACAT 146762 .......... .......... .......... .......... .......... .......... 160 CTAAGCTAGA TAAAAATGGT ATACATCATC GAATGCATGA GAGCCTACGA AGTCGGGATG 146702 .......... .......... .......... .......... .......... .......... 160 AAAGCTCCAC GTCCAGATAA CTGCAACGCC AACCTGTAAG CTCTAGCGTC CACCTGTGCC 146642 .......... .......... .......... .......... .......... .......... 160 TGCACCTAAA ATTGTAGAAT TGTATGGGAT TAGTATTGAT ATACCGTGGT TTCACGGTAT 146582 .......... .......... .......... .......... .......... .......... 160 AATTAATACT TTTTCCTTAA GTTTAGTGTG TCCGAAAGCC CTTTTTGTGC TAATTTTGAT 146522 .......... .......... .......... .......... .......... .......... 160 ATAAGTTTCT CTTTGTTTTG CAGGAAATCT GTCCAAAGCT GAATGCGG-A GATTTTAAGC 146463 ||||| | ||| |||| | ||| |||| | | |||| ||| .......... .......... ...GAAATTT GTCTAAAGAT GAACGCGGAA GTTTTTGAGC 197 GAAAAATGCA GAAGAG-GCC ACCTACGGAG CTTATGACGG TCCGTCGTGC CTGTGACAGT 146404 |||| |||| ||| || || |||||||||| ||| | |||| |||||||||| |||| || || AAAAACTGCA GAAAAGTACC ACCTACGGAG CTTGTAACGG TCCGTCGTGC CTGTAACGGT 257 CCGTAGGTGG CAGCGTAGAG AAGCTGCTGA AGGAAGATAG GGAAGTCTGA CCAAGTGTGG 146344 || ||||||| || ||||| | |||||||||| |||||||| | |||||||||| |||||||||| CCATAGGTGG CATCGTAGTG AAGCTGCTGA AGGAAGATGG GGAAGTCTGA CCAAGTGTGG 317 GATTACGAAG CTTGTGACGG TCAGTCATGG CTATGACGGT CCGTCCTGCA GGTACATCGT 146284 | ||||| || ||||||| | ||| | | |||||||| ||||||||| ||| | |||| G-TTACGGAG TGCGTGACGG ACCGTCGTAA CCATGACGGT CCGTCCTGCT GGTTCGTCGT 376 GAAGATCAGA GAAGTGATCC CAGTACCAAG ATTCCAAGAT TTGAAGTATT TTGAAACGAG 146224 |||||||||| ||||| || || | GAAGATCAGA GAAGTAGTCA GAGAAA.... .......... .......... .......... 402 ACCCTCGATG AACCGTTGTG CTTATGACGG TCCGTCACAC TTGCCGTCGA GGGAAATGAA 146164 || || | | |||| ||||||| || ||||| ||| | | |||||| .......... .....TTATG CATGTGACAA TCCGTCATAC CTGCCGCCGA GCGTAATGAA 447 GAAAGCAGCA GAAGAATTGC ACCAAGTATG GGACGACGGA GTCCACGACG GTCCGTCATG 146104 || ||||||| |||||||| | ||||||||| |||||||||| ||||| || | ||||| || GACAGCAGCA GAAGAATT-C GCCAAGTATG GGACGACGGA GTCCATGATG ACCCGTCGTG 506 ACCACGACGG TCCATCGCGT AGTCCGTCGA CCCAGCCGCG TTTTGGCAGA TTTCCAGTAA 146044 ||||||||| || || || ||||||||| || | |||| ||| | |||| ||| || || ACCACGACGA CCCGTCCCGA GGTCCGTCGA CCAAATCGCG TTTCGACAGA TTTTCAACAA 566 TTAGAATCCT TGTTTAATTA GGTTTTTATT TTTT-TATAA ATAGTTCAAA AAACCTCGTT 145985 |||| |||| | ||| |||| | |||||||| |||| | || |||||||||| ||||||| || ATAGAGTCCT TCTTTGATTA GATTTTTATT TTTTAAAAAA ATAGTTCAAA AAACCTCATT 626 TTTTAGGTTA GACTCTGTGA TATTAAAC-C TTATATTGCT AGACTTGTGT TTGGAGTGTT 145926 ||| ||||| |||||| | ||||| || | || || || | | | || | | || | | | TTTGGGGTTA GACTCTTAGT TATTAGACAC TTTTA-TGTT ATA-TTCTTT GTGAGGAGAT 684 T 145925 | T 685 hqPGS_C04HBa0031H05.1-_SGN-E546250- (146498 146258,146208 145925) ******************************************************************************** EST sequence 38 -strand 695 n (File: SGN-E241731-) 1 ATTCTATTAT TAGATATATA TGAATATTGT GATTATGACT ATGGGTAACT AAGCTACATA 61 ACTATGGTTG TGGGAACCAT GGGTGAATAA TGAGGTAAAA TCTAACTAAA ATAACAATTC 121 TAGAATAGTG TCTTGCATGT ATTGATAATT GTTTTGCTTA GAAGTCTTTT TAACGGATGG 181 TCAACATTAG AACTCGCCTT AGTGCTACTT GCCGGACCAA GAAGGTAGAT AATAGCAAAA 241 GAATTATTAA CATAAATTTA GTGTATACTT TTTGATAGGC TAGTATTGAT TGGTACGAGG 301 TAATAACTTA GTCAAATATC GAATACAATG CTTAATATGA GGTAATGGTA AGGGTTTATA 361 TAGCAACACA CGTAGACGGA CCAAGGTGCG TAGTGATATT TTCTAGATGC AAGACCAAGG 421 ATATAGAAAT ACATAACTTA TTACTTTGTA TGCAAGATAC TAGGAAAGAA TTGTTATAGT 481 TAGAATTATT AAATTAGGAA CTTGTGGAGA ACACTTAAAC CCTAGTTAAT TATATTATTT 541 GATTAAATTC CAACATTTGA ATTTGTTAGT TGCCTACTTA AATTTAGCTA GCTATTTCCA 601 TTCATTTAGA ACTAAAACCC CCCTTTTTAT TGTCTTTGTT TTCTAAAGAA ATAATTGACT 661 AACTAATAGT AATAACAAAT TGAAAATAAC TCTGA Predicted gene structure (within gDNA segment 147393 to 142690): Exon 1 145832 145147 ( 686 n); cDNA 7 693 ( 687 n); score: 0.843 MATCH C04HBa0031H05.1- SGN-E241731- 0.843 686 0.987 C PGS_C04HBa0031H05.1-_SGN-E241731- (145832 145147) Alignment (genomic DNA sequence = upper lines): TTGTTTACCA TATTTGAATA TTGTGTTTAT GGCTATGAGG AACTAAACTC CATAACTAGG 145773 || || | ||| |||||| ||||| |||| | ||||| | |||||| || |||||||| | TTATTAGATA TATATGAATA TTGTGATTAT GACTATGGGT AACTAAGCTA CATAACTATG 66 GTTGTGGGAA CCATAGGCAA ATAATGAGAT AAACCCTAGC TAAAATAACA ATTCTAGAAT 145713 |||||||||| |||| || | |||||||| | ||| ||| | |||||||||| |||||||||| GTTGTGGGAA CCATGGGTGA ATAATGAGGT AAAATCTAAC TAAAATAACA ATTCTAGAAT 126 CGTGTCTTGC ATGTATTAAT AATTCTTTCG CTTAGAAGTC TTTTTAACGG ATGATCAACG 145653 ||||||||| ||||||| || |||| ||| | |||||||||| |||||||||| ||| ||||| AGTGTCTTGC ATGTATTGAT AATTGTTTTG CTTAGAAGTC TTTTTAACGG ATGGTCAACA 186 TTAGAACTCG CCTTAATGCT ACTTGCCGGA CCAAGGAGGT AGATAATAGG AAAAGAATTA 145593 |||||||||| ||||| |||| |||||||||| ||||| |||| ||||||||| |||||||||| TTAGAACTCG CCTTAGTGCT ACTTGCCGGA CCAAGAAGGT AGATAATAGC AAAAGAATTA 246 TTAACATAGA TTTAGTGTAT ACTATCTAAT AGGCTAGTAT TGATTGGTAC GAGGTAATAA 145533 |||||||| | |||||||||| ||| | | || |||||||||| |||||||||| |||||||||| TTAACATAAA TTTAGTGTAT ACTTTTTGAT AGGCTAGTAT TGATTGGTAC GAGGTAATAA 306 CTTAGTCAAA TATCGAATAC GATGCTTAAT ATGAGGTAAG GATAAGGGTT AGGAAAGCAA 145473 |||||||||| |||||||||| ||||||||| ||||||||| | |||||||| | ||||| CTTAGTCAAA TATCGAATAC AATGCTTAAT ATGAGGTAAT GGTAAGGGTT TATATAGCAA 366 CACACGTAGC CGGACCAAGG TGCGGAGTGA GATTTTCTAG GTGCCGGACC AAGGATTTAG 145413 ||||||||| |||||||||| |||| ||||| ||||||||| ||| |||| |||||| ||| CACACGTAGA CGGACCAAGG TGCGTAGTGA TATTTTCTAG ATGCAAGACC AAGGATATAG 426 AAATACATAA CTTATCACTT TGCATGCAAG ATACTAGGAA AGAATTGTTA TAGTTAGAAT 145353 |||||||||| ||||| |||| || ||||||| |||||||||| |||||||||| |||||||||| AAATACATAA CTTATTACTT TGTATGCAAG ATACTAGGAA AGAATTGTTA TAGTTAGAAT 486 TATCAAGTTA TAAACCTGTG GGGAACACGT AAACCCTAGT TACTTTGATT ACTTGACTAA 145293 ||| || ||| ||| |||| | |||||| | |||||||||| || || ||| | |||| ||| TATTAAATTA GGAACTTGTG GAGAACACTT AAACCCTAGT TAATTATATT ATTTGATTAA 546 AACTCAACAT TAAAAGCTGT TAAGTGTCTC TTTCAAGTTC GTTAGTTATT TTTGCTCATT 145233 | |||||| | || ||| || || || || || || | ||| |||| | ||||| ATTCCAACAT TTGAATTTGT TAGTTGCCTA CTTAAATTTA GCTAGCTATT TCCATTCATT 606 AGGAAATACA AACCCCCCTT TTA-TGATTT TACTTTCTAA GGAAGTCATC AACCGAACAA 145174 ||| || | | ||||| || ||| || || | ||||||| ||| | || || | || TAGAACTAAA ACCCCCCTTT TTATTGTCTT TGTTTTCTAA AGAAATAATT GACTAACTAA 666 TAGTAATAAC AAGTTGAAGT TAAGTCT 145147 |||||||||| || ||||| ||| ||| TAGTAATAAC AAATTGAAAA TAACTCT 693 hqPGS_C04HBa0031H05.1-_SGN-E241731- (145832 145147) ******************************************************************************** EST sequence 94 +strand 767 n (File: SGN-E546251+) 1 AAGCAGCCGC TACCCCTCCT CTCTCCTTGC TCCGGCAAAA CGCCGCGAAG GCAGAGGTGG 61 CCACCTTCCT CCGTCCCTCT GTTCCTCCCC TCTCTTCTCT TCGCCTTCGC TCCCTCTCAT 121 TTTTTCTCTT CTCCTCCGGT AGAGGAGCAA CAGTGCAGGA ACCAGCAGGC GCTGGCTGCC 181 TCTGCTCTTA TTCTGTGGAC AGCAGCTCGG TGAAAGCAAC GAGAAGCAGC AACCAGCATC 241 CGGACAGAAA CACCAGTAGC AGTGGTGAGG CAACGTCGCT CAACTCCTCT CCTCTTCTCC 301 TTGTCTCCGA CAAAACAACC AAAAGCAGCA GCAACGACAG CCGATGAGGA GAGCAACACA 361 AGCTCCAACA ACCAAGCATC TCTAGGCGAG ACTCTGAACA AGTGAGCTCC GGTGAAACTT 421 TTGAAATTTT GAGTTTGTCA AAGACAGATC TGTAACAGAC CCGTCCAGGA AATTTGTCTA 481 AAGATGAACG CGGAAGTTTT TGAGCAAAAA CTGCAGAAAA GTACCACCTA CGGAGCTTGT 541 AACGGTCCGT CGTGCCTGTA ACGGTCCATA GGTGGCATCG TAGTGAAGCT GCTGAAGGAA 601 GATGGGGAAG TCTGACCAAG TGTGGGTTAC GGAAGTGCGT GACGGACCGT CGTAACCATG 661 ACGGTCCGTC CTGCTGGTTC GTCGTGAAGA TCAGAGAAGT AGTCAGAGAA ATTATGCATG 721 TGACAATCCG TCATACCTGC CGCCGAGCGT AATGAAGACA GCAGCAG Predicted gene structure (within gDNA segment 152824 to 144989): Exon 1 147481 147471 ( 11 n); cDNA 458 468 ( 11 n); score: 0.545 Intron 1 147470 146499 ( 972 n); Pd: 0.593 (s: 0), Pa: 0.998 (s: 0.79) Exon 2 146498 146258 ( 241 n); cDNA 469 711 ( 243 n); score: 0.815 Intron 2 146257 146209 ( 49 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.78) Exon 3 146208 146153 ( 56 n); cDNA 712 767 ( 56 n); score: 0.804 MATCH C04HBa0031H05.1- SGN-E546251+ 0.813 308 0.402 C PGS_C04HBa0031H05.1-_SGN-E546251+ (147481 147471,146498 146258,146208 146153) Alignment (genomic DNA sequence = upper lines): GAGCTTTTAA GGTGATAGCT TGGTCCATCT GTACCAGGGA TATCCTTAAT TCTCCATCTG 147422 || | | | | GACCCGTCCA G......... .......... .......... .......... .......... 468 TCAACCCAGC TGGGTTACAA GCATCTCCAT TTCACCAGTT GGGGCCTGGG GAGGAATTTG 147362 .......... .......... .......... .......... .......... .......... 468 GTTGCCCTAG CAACTGCTTC TCCTCGTCCC TGACCACTGT TCCTCTTTGT GTTCATTTTT 147302 .......... .......... .......... .......... .......... .......... 468 TTTGAAAAAG TAGAATTGAT GTTCGATAAG CTCATAACAC CAAGGAATCA GACATTAGAG 147242 .......... .......... .......... .......... .......... .......... 468 AAGGCACGAT AAGATAGAAG AAGGGAATTT TCCTACGCAT CATGCAGTCT CTAATTTAGG 147182 .......... .......... .......... .......... .......... .......... 468 ATAGTGGTGC ACTTCACTAC CATGACTTAG AAACTACTCA ATGTGGTTGA TGTGAACTTA 147122 .......... .......... .......... .......... .......... .......... 468 TTATACTCGG AATTTAACCT AATTCTTTGA TACCAACTTG GTCATGACCG GAATCTAGAC 147062 .......... .......... .......... .......... .......... .......... 468 CCCAGACGAT ATCAGCGTCG TTGACCTCTC TGAGGTCGCA GACAAGCCTA CTTACGTCAT 147002 .......... .......... .......... .......... .......... .......... 468 TCTTACTTCA TCTGGATTAA TTATAGCAGA AAATTTGAAA CTTTTTGTTT CTTAACATAC 146942 .......... .......... .......... .......... .......... .......... 468 TAATAATTCT ATTAAATTCA TAATTTTTCA TCCTCAACCA TCTAACATTA ATATAATCAA 146882 .......... .......... .......... .......... .......... .......... 468 ATGAAAGAAA TAGTTTAATA TAGCATTAAA TGTATACTTG CCAAAATGGC ACGATACGAT 146822 .......... .......... .......... .......... .......... .......... 468 GTCTGAAGAA AAATAGAAAG AAACACTAGT GGAACATGCT CCACTAACTA TAGCCTACAT 146762 .......... .......... .......... .......... .......... .......... 468 CTAAGCTAGA TAAAAATGGT ATACATCATC GAATGCATGA GAGCCTACGA AGTCGGGATG 146702 .......... .......... .......... .......... .......... .......... 468 AAAGCTCCAC GTCCAGATAA CTGCAACGCC AACCTGTAAG CTCTAGCGTC CACCTGTGCC 146642 .......... .......... .......... .......... .......... .......... 468 TGCACCTAAA ATTGTAGAAT TGTATGGGAT TAGTATTGAT ATACCGTGGT TTCACGGTAT 146582 .......... .......... .......... .......... .......... .......... 468 AATTAATACT TTTTCCTTAA GTTTAGTGTG TCCGAAAGCC CTTTTTGTGC TAATTTTGAT 146522 .......... .......... .......... .......... .......... .......... 468 ATAAGTTTCT CTTTGTTTTG CAGGAAATCT GTCCAAAGCT GAATGCGG-A GATTTTAAGC 146463 ||||| | ||| |||| | ||| |||| | | |||| ||| .......... .......... ...GAAATTT GTCTAAAGAT GAACGCGGAA GTTTTTGAGC 505 GAAAAATGCA GAAGAG-GCC ACCTACGGAG CTTATGACGG TCCGTCGTGC CTGTGACAGT 146404 |||| |||| ||| || || |||||||||| ||| | |||| |||||||||| |||| || || AAAAACTGCA GAAAAGTACC ACCTACGGAG CTTGTAACGG TCCGTCGTGC CTGTAACGGT 565 CCGTAGGTGG CAGCGTAGAG AAGCTGCTGA AGGAAGATAG GGAAGTCTGA CCAAGTGTGG 146344 || ||||||| || ||||| | |||||||||| |||||||| | |||||||||| |||||||||| CCATAGGTGG CATCGTAGTG AAGCTGCTGA AGGAAGATGG GGAAGTCTGA CCAAGTGTGG 625 GATTAC-GAA GCTTGTGACG GTCAGTCATG GCTATGACGG TCCGTCCTGC AGGTACATCG 146285 | |||| ||| | |||||| | | ||| | | ||||||| |||||||||| ||| | ||| G-TTACGGAA GTGCGTGACG GACCGTCGTA ACCATGACGG TCCGTCCTGC TGGTTCGTCG 684 TGAAGATCAG AGAAGTGATC CCAGTACCAA GATTCCAAGA TTTGAAGTAT TTTGAAACGA 146225 |||||||||| |||||| || || | TGAAGATCAG AGAAGTAGTC AGAGAAA... .......... .......... .......... 711 GACCCTCGAT GAACCGTTGT GCTTATGACG GTCCGTCACA CTTGCCGTCG AGGGAAATGA 146165 || | || | |||| ||||||| | | ||||| || || | ||||| .......... ......TTAT GCATGTGACA ATCCGTCATA CCTGCCGCCG AGCGTAATGA 755 AGAAAGCAGC AG 146153 ||| |||||| || AGACAGCAGC AG 767 hqPGS_C04HBa0031H05.1-_SGN-E546251+ (146498 146258,146208 146153) ******************************************************************************** EST sequence 29 -strand 574 n (File: SGN-E550629-) 1 GGAACGAAGA CCCTCGACGG ACCGTTGTGC CTACGACGGT CCGTCATACA TGCCGTCGAG 61 GGTAATGAAG AGAGCAGCAA AAGAAATTGC ATAAGTATGG GACAACGGAG TCCATGACGG 121 TCTGTCGTGA CCACGACGAT CCGTCGTGAG GTCCGTCGAC CCAGCCGCGT TTTGGCAGAT 181 TTCCAGCAAA TATAGTCCTT GTTTAATTAG GTTTTTATTT TCTATAAATA GTTCTAAAAA 241 CATCATTTTT GAGGTAAGAC TCTGGATCAT TGTTAGACTC CGTATTGTTA GACATCGTAT 301 AAGAAAACAT TTTATTGTTA GACTTTTGAT TATCATTAAT TGTTGGTGAT TTTTTGTGAT 361 AAATCAAGAA AACTCTCAGA TTTTACTCTT TCTCTTTGAA TTAAGTACAT GAATTCTTAT 421 ATGATATATT TGAATATTGT GATTATGACT ATGGTTAACT AAACTCCATA ACTAGGATTG 481 TGGGAACCAT AGGAGAATAT TGAGGTAAAA CCTAACTAAA ATAACAATTC TAGAATAGTG 541 TCTTGCATGT ATTAATAATT CTTTGGCTCA AAAG Predicted gene structure (within gDNA segment 148192 to 144985): Exon 1 146231 145675 ( 557 n); cDNA 2 574 ( 573 n); score: 0.767 MATCH C04HBa0031H05.1- SGN-E550629- 0.767 557 0.970 C PGS_C04HBa0031H05.1-_SGN-E550629- (146231 145675) Alignment (genomic DNA sequence = upper lines): GAAACGAGAC CCTCGATGAA CCGTTGTGCT TATGACGGTC CGTCACACTT GCCGTCGAGG 146172 ||| |||| |||||| | | ||||||||| || ||||||| ||||| || | |||||||||| GAACGAAGAC CCTCGACGGA CCGTTGTGCC TACGACGGTC CGTCATACAT GCCGTCGAGG 61 GAAATGAAGA AAGCAGCAGA AG-AATTGCA CCAAGTATGG GACGACGGAG TCCACGACGG 146113 | |||||||| ||||||| | || ||||||| |||||||| ||| |||||| |||| ||||| GTAATGAAGA GAGCAGCAAA AGAAATTGCA -TAAGTATGG GACAACGGAG TCCATGACGG 120 TCCGTCATGA CCACGACGGT CCATCGCGTA GTCCGTCGAC CCAGCCGCGT TTTGGCAGAT 146053 || ||| ||| |||||||| | || ||| | |||||||||| |||||||||| |||||||||| TCTGTCGTGA CCACGACGAT CCGTCGTGAG GTCCGTCGAC CCAGCCGCGT TTTGGCAGAT 180 TTCCAGTAAT TAGAATCCTT GTTTAATTAG GTTTTTATTT TTTTATAAAT AGTTCAAAAA 145993 |||||| || || | ||||| |||||||||| ||||||| || || ||||||| ||||| |||| TTCCAGCAAA TATAGTCCTT GTTTAATTAG GTTTTTA-TT TTCTATAAAT AGTTCTAAAA 239 ACCTCGTTTT TTAGGTTAGA CTCT-G-TGA -TATTAAACC TTATATTGCT AGAC-TTGTG 145937 || || |||| | |||| ||| |||| | | | | ||| || ||||| | |||| | || ACATCATTTT TGAGGTAAGA CTCTGGATCA TTGTTAGACT CCGTATTGTT AGACATCGTA 299 TTTG-GAGTG TTTGATTGTT AGA-----GA -T-TC-TT-A ---CAAGTGA TTTTTGGTGA 145890 | | | ||| |||||| ||| || | || || | |||| ||||| |||| TAAGAAAACA TTTTATTGTT AGACTTTTGA TTATCATTAA TTGTTGGTGA TTTTTTGTGA 359 TTAATCAAGC AAATTTTCGG ACTTTATTCT TTCTCATTGA AGTAAGTACA TGAATTCTTG 145830 | ||||||| ||| | || | | |||| ||| ||||| |||| | |||||||| ||||||||| TAAATCAAGA AAACTCTCAG ATTTTACTCT TTCTCTTTGA ATTAAGTACA TGAATTCTTA 419 TTTACCATAT TTGAATATTG TGTTTATGGC TATGAGGAAC TAAACTCCAT AACTAGGGTT 145770 | | |||| |||||||||| || ||||| | |||| ||| |||||||||| ||||||| || TATGATATAT TTGAATATTG TGATTATGAC TATGGTTAAC TAAACTCCAT AACTAGGATT 479 GTGGGAACCA TAGGCAAATA ATGAGATAAA CCCTAGCTAA AATAACAATT CTAGAATCGT 145710 |||||||||| |||| |||| |||| |||| |||| |||| |||||||||| ||||||| || GTGGGAACCA TAGGAGAATA TTGAGGTAAA ACCTAACTAA AATAACAATT CTAGAATAGT 539 GTCTTGCATG TATTAATAAT TCTTTCGCTT AGAAG 145675 |||||||||| |||||||||| ||||| ||| | ||| GTCTTGCATG TATTAATAAT TCTTTGGCTC AAAAG 574 hqPGS_C04HBa0031H05.1-_SGN-E550629- (146231 145675) ******************************************************************************** EST sequence 31 -strand 574 n (File: SGN-E550645-) 1 GGAACGAAGA CCCTCGTCGG ACCGTTGTGC CTACGACGGT CCGTCATACA TGCCGTCGAG 61 GGTAATGAAG AGAGCAGCAA AAGAAATTGC ATAAGTATGG GACAACGGAG TCCATGACGG 121 TCTGTCGTGA CCACGACGAT CCGTCGTGAG GTCCGTCGAC CCAGCCGCGT TTTGGCAGAT 181 TTCCAGCAAA TATAGTCCTT GTTTAATTAG GTTTTTATTT TCTATAAATA GTTCTAAAAA 241 CATCATTTTT GAGGTAAGAC TCTGGATCAT TGTTAGACTC CGTATTGTTA GACATCGTAT 301 AAGAAAACAT TTTATTGTTA GACTTTTGAT TATCATTAAT TGTTGGTGAT TTTTTGTGAT 361 AAATCAAGAA AACTCTCAGA TTTTACTCTT TCTCTTTGAA TTAAGTACAT GAATTCTTAT 421 ATGATATATT TGAATATTGT GATTATGACT ATGGTTAACT AAACTCCATA ACTAGGATTG 481 TGGGAACCAT AGGAGAATAT TGAGGTAAAA CCTAACTAAA ATAACAATTC TAGAATAGTG 541 TCTTGCATGT ATTAATAATT CTTTGGCTCA AAAG Predicted gene structure (within gDNA segment 148192 to 144985): Exon 1 146231 145675 ( 557 n); cDNA 2 574 ( 573 n); score: 0.765 MATCH C04HBa0031H05.1- SGN-E550645- 0.765 557 0.970 C PGS_C04HBa0031H05.1-_SGN-E550645- (146231 145675) Alignment (genomic DNA sequence = upper lines): GAAACGAGAC CCTCGATGAA CCGTTGTGCT TATGACGGTC CGTCACACTT GCCGTCGAGG 146172 ||| |||| ||||| | | ||||||||| || ||||||| ||||| || | |||||||||| GAACGAAGAC CCTCGTCGGA CCGTTGTGCC TACGACGGTC CGTCATACAT GCCGTCGAGG 61 GAAATGAAGA AAGCAGCAGA AG-AATTGCA CCAAGTATGG GACGACGGAG TCCACGACGG 146113 | |||||||| ||||||| | || ||||||| |||||||| ||| |||||| |||| ||||| GTAATGAAGA GAGCAGCAAA AGAAATTGCA -TAAGTATGG GACAACGGAG TCCATGACGG 120 TCCGTCATGA CCACGACGGT CCATCGCGTA GTCCGTCGAC CCAGCCGCGT TTTGGCAGAT 146053 || ||| ||| |||||||| | || ||| | |||||||||| |||||||||| |||||||||| TCTGTCGTGA CCACGACGAT CCGTCGTGAG GTCCGTCGAC CCAGCCGCGT TTTGGCAGAT 180 TTCCAGTAAT TAGAATCCTT GTTTAATTAG GTTTTTATTT TTTTATAAAT AGTTCAAAAA 145993 |||||| || || | ||||| |||||||||| ||||||| || || ||||||| ||||| |||| TTCCAGCAAA TATAGTCCTT GTTTAATTAG GTTTTTA-TT TTCTATAAAT AGTTCTAAAA 239 ACCTCGTTTT TTAGGTTAGA CTCT-G-TGA -TATTAAACC TTATATTGCT AGAC-TTGTG 145937 || || |||| | |||| ||| |||| | | | | ||| || ||||| | |||| | || ACATCATTTT TGAGGTAAGA CTCTGGATCA TTGTTAGACT CCGTATTGTT AGACATCGTA 299 TTTG-GAGTG TTTGATTGTT AGA-----GA -T-TC-TT-A ---CAAGTGA TTTTTGGTGA 145890 | | | ||| |||||| ||| || | || || | |||| ||||| |||| TAAGAAAACA TTTTATTGTT AGACTTTTGA TTATCATTAA TTGTTGGTGA TTTTTTGTGA 359 TTAATCAAGC AAATTTTCGG ACTTTATTCT TTCTCATTGA AGTAAGTACA TGAATTCTTG 145830 | ||||||| ||| | || | | |||| ||| ||||| |||| | |||||||| ||||||||| TAAATCAAGA AAACTCTCAG ATTTTACTCT TTCTCTTTGA ATTAAGTACA TGAATTCTTA 419 TTTACCATAT TTGAATATTG TGTTTATGGC TATGAGGAAC TAAACTCCAT AACTAGGGTT 145770 | | |||| |||||||||| || ||||| | |||| ||| |||||||||| ||||||| || TATGATATAT TTGAATATTG TGATTATGAC TATGGTTAAC TAAACTCCAT AACTAGGATT 479 GTGGGAACCA TAGGCAAATA ATGAGATAAA CCCTAGCTAA AATAACAATT CTAGAATCGT 145710 |||||||||| |||| |||| |||| |||| |||| |||| |||||||||| ||||||| || GTGGGAACCA TAGGAGAATA TTGAGGTAAA ACCTAACTAA AATAACAATT CTAGAATAGT 539 GTCTTGCATG TATTAATAAT TCTTTCGCTT AGAAG 145675 |||||||||| |||||||||| ||||| ||| | ||| GTCTTGCATG TATTAATAAT TCTTTGGCTC AAAAG 574 hqPGS_C04HBa0031H05.1-_SGN-E550645- (146231 145675) ******************************************************************************** EST sequence 52 -strand 385 n (File: SGN-E273427-) 1 AATATAGTCC TTGTTTAATT AGGTTTTTAT TTTCTATAAA TAGTTCTAAA AACATCATTT 61 TTGAGGTAAG ACTCTGGATC ATTGTTAGAC TCCGTATTGT TAGACATCGT ATAAGAAAAC 121 ATTTTATTGT TAGACTTTTG ATTATCATTA ATTGTTGGTG ATTTTTTGTG ATAAATCAAG 181 AAAACTCTCA GATTTTACTC TTTCTCTTTG AATTAAGTAC ATGAATTCTT ATATGATATA 241 TTTGAATATT GTGATTATGA CTATGGTTAA CTAAACTCCA TAACTAGGAT TGTGGGAACC 301 ATAGGAGAAT ATTGAGGTAA AACCTAACTA AAATAACAAT TCTAGAATAG TGTCTTGCAT 361 GTATTAATAA TTCTTTGGCT CAAAA Predicted gene structure (within gDNA segment 148587 to 144995): Exon 1 145978 145676 ( 303 n); cDNA 84 385 ( 302 n); score: 0.782 MATCH C04HBa0031H05.1- SGN-E273427- 0.782 303 0.787 C PGS_C04HBa0031H05.1-_SGN-E273427- (145978 145676) Alignment (genomic DNA sequence = upper lines): GTTAGACTCT GTGATATTAA ACCTTATATT GCTAGAC-TT GTGTTTGGAG TG-TTTGATT 145921 ||||||||| || | ||| || | ||| | || || | || || ||||||| GTTAGACTCC GTATTGTTAG ACATCGTATA AGAAAACATT TTATTGTTAG ACTTTTGATT 143 GTTAGAGATT CTTACAAGTG ATTTTTGGTG ATTAATCAAG CAAATTTTCG GACTTTATTC 145861 | | ||| || ||| |||||| ||| || ||||||| ||| | || || |||| || ATCATTAATT GTT---GGTG ATTTTTTGTG ATAAATCAAG AAAACTCTCA GATTTTACTC 200 TTTCTCATTG AAGTAAGTAC ATGAATTCTT GTTTACCATA TTTGAATATT GTGTTTATGG 145801 |||||| ||| || ||||||| |||||||||| | | ||| |||||||||| ||| ||||| TTTCTCTTTG AATTAAGTAC ATGAATTCTT ATATGATATA TTTGAATATT GTGATTATGA 260 CTATGAGGAA CTAAACTCCA TAACTAGGGT TGTGGGAACC ATAGGCAAAT AATGAGATAA 145741 ||||| || |||||||||| |||||||| | |||||||||| ||||| ||| | |||| ||| CTATGGTTAA CTAAACTCCA TAACTAGGAT TGTGGGAACC ATAGGAGAAT ATTGAGGTAA 320 ACCCTAGCTA AAATAACAAT TCTAGAATCG TGTCTTGCAT GTATTAATAA TTCTTTCGCT 145681 | |||| ||| |||||||||| |||||||| | |||||||||| |||||||||| |||||| ||| AACCTAACTA AAATAACAAT TCTAGAATAG TGTCTTGCAT GTATTAATAA TTCTTTGGCT 380 TAGAA 145676 | || CAAAA 385 hqPGS_C04HBa0031H05.1-_SGN-E273427- (145978 145676) ******************************************************************************** EST sequence 97 +strand 758 n (File: SGN-E349968+) 1 AGCTTGTGAC GGTCCGTAAG TGGCATCGTA GTGAAGCTGC TGAAGGAAGA TGGGGAAGTC 61 TGACCAAGTG TGGGGTTATG GAGAGTGTGA CGGACCGTCG TAGCCATGGT GGTCTGTCCT 121 GCTAGTTCGT CATGAAGATC AAAGAAGTAG TCCCAATACC CAAATTCCAA GAATTCAAGT 181 GTTATGGAAT GAAGACCCTC GACGGACCGT TGTGCCTGTG ATGATCCGTC ATACCTGCCG 241 TCGTGGATAA TAAAGAGACC AACAGAAGAC TTTGCATAGG TATGGGATGT CGGAGTCCAT 301 TATGGCCCAT CGTGACCATG ACGACCCGTC GCGAGGTCCG TCGACCTAGC CGCATTTTGA 361 CAGATTTCCA GCCAAGAGGG TCCTTCTCTA ATTAGGTTTT TGTTTTTTAT AAATAATTTG 421 AAAAACCTTG TTTTTAGTTT TAGACTCTTT GGTGATTAGA CTCTCTTATA GTTAGACTTT 481 GGTTATTTTA GCTTCTTTTG TGGATTAGAC TTGGTAATTT TTATTACACT CTTGGAGAAT 541 CTTTAGTCTT CAATTAATTT TAGTAATTAA TTTTTGGTGA TTTTGTTGAT TAATCAAGTG 601 AACTTCTTGA TTATTTTCTT TCTTATTGAA GTAAGTGCAT GAATTCTTAT ATTACATATT 661 TGAATATTGT GATTATGACT ATGTGTAACT AAACTCCATA ACTANGGTTG TGGGAACACA 721 GGCGAATAAT GAGGTAAACC CTACTAAAAA ATAATTCT Predicted gene structure (within gDNA segment 147304 to 144625): Exon 1 146415 145940 ( 476 n); cDNA 2 479 ( 478 n); score: 0.775 MATCH C04HBa0031H05.1- SGN-E349968+ 0.775 476 0.628 C PGS_C04HBa0031H05.1-_SGN-E349968+ (146415 145940) Alignment (genomic DNA sequence = upper lines): GCCTGTGACA GTCCGTAGGT GGCAGCGTAG AGAAGCTGCT GAAGGAAGAT AGGGAAGTCT 146356 || |||||| ||||||| || |||| ||||| ||||||||| |||||||||| ||||||||| GCTTGTGACG GTCCGTAAGT GGCATCGTAG TGAAGCTGCT GAAGGAAGAT GGGGAAGTCT 61 GACCAAGTGT GGGATTACGA AGCTTGTGAC GGTCAGTCAT GGCTATGACG GTCCGTCCTG 146296 |||||||||| ||| ||| | || |||||| || | ||| | || ||| | ||| |||||| GACCAAGTGT GGGGTTATGG AGAGTGTGAC GGACCGTCGT AGCCATGGTG GTCTGTCCTG 121 CAGGTACATC GTGAAGATCA GAGAAGTGAT CCCAGTACCA AGATTCCAAG ATTTGAAGTA 146236 | || | || ||||||||| |||||| | |||| |||| | |||||||| | || |||| CTAGTTCGTC ATGAAGATCA AAGAAGTAGT CCCAATACCC AAATTCCAAG AATTCAAGTG 181 TTTTGAAACG -AGACCCTCG ATGAACCGTT GTGCTTATGA CGGTCCGTCA CACTTGCCGT 146177 || || || | ||||||||| | | |||||| |||| | ||| | ||||||| || |||||| TTATGGAATG AAGACCCTCG ACGGACCGTT GTGCCTGTGA TGATCCGTCA TACCTGCCGT 241 CGAGGGAAAT GAAGAAAGCA GCAGAAGA-A TTGCACCAAG TATGGGACGA CGGAGTCCAC 146118 || || ||| |||| | || ||||||| ||||| | | ||||||| | ||||||||| CGTGGATAAT AAAGAGACCA ACAGAAGACT TTGCA-TAGG TATGGGATGT CGGAGTCCAT 300 GACGGTCCGT CATGACCACG ACGGTCCATC GCGTAGTCCG TCGACCCAGC CGCGTTTTGG 146058 | || || | | |||||| | ||| || || ||| ||||| |||||| ||| ||| ||||| TATGGCCCAT CGTGACCATG ACGACCCGTC GCGAGGTCCG TCGACCTAGC CGCATTTTGA 360 CAGATTTCCA GTAATTAGAA TCCTTGTTTA ATTAGGTTTT TATTTTTTTA TAAATAGTTC 145998 |||||||||| | | || ||||| | || |||||||||| | ||||||| |||||| || CAGATTTCCA GCCAAGAGGG TCCTTCTCTA ATTAGGTTTT T-GTTTTTTA TAAATAATTT 419 AAAAAACCTC GTTTTTTAGG TTAGACTCTG TGAT-ATTAA AC-CTTATAT TGCTAGACTT 145940 |||||||| |||||| ||||||||| || | |||| || || ||| | ||||||| GAAAAACCTT GTTTTTAGTT TTAGACTCTT TGGTGATTAG ACTCTCTTAT AGTTAGACTT 479 hqPGS_C04HBa0031H05.1-_SGN-E349968+ (146415 145940) ******************************************************************************** EST sequence 68 +strand 731 n (File: SGN-E261921+) 1 TATGGACGTA TGGTGCAAGG TTTATCTCAC GAAAAAGATA TACTGGTGGT CATGTTCTCA 61 ATGTTTTCGA CGCCAAGCAT CTCCATTCAG TAGTAAGCGA TTTACTTTTT AAGGAAATCT 121 GTCCAAAGAT GAATGCGGAG ATTTTGAGTG AAGAAATGCA GAATAGACGA CCTACAGAGC 181 TTATGACGGT CCGTCGTGCT TGTGACGGTC TGTAGGTGGC AGCGTAGTGC AGCTGCTGAA 241 AGAAGATGGG GAAGTCTGAC CAAGTGCGGG GCTACGGAGT TCATGACGGT CCGTCCTGCA 301 GGTTCGTCAT GAAGTTCAGA GAAGTAGTCC CAGTACCCAT ATTCCAAGAG TTCAAGTGTG 361 TTGAAACGAA GACCCTCGAT AGACCGTTGT GCCTATGACG GTCCGTCATA CCTGCCGTCG 421 AGGGTAATGA AGAGAGAAGC AAAAGAAATT GCATAAGTAT GGGACGACAG AGTCCATGAC 481 GGTCCATCGT GACCATGACG ATCCGTCGTG AGTTCTGTCG ACCCAGCCGC GTTTTGGCAG 541 ATTTCCAGCA AATAGAGTCC TTGTTTAGTT AGGTTTTTAT TTTCTATAAA TAGTTCGAAA 601 AACCTCGTTT TTGAGGTTAT ACTCCGTATT GTTAGACATC ATATTAGTAG ACACTGTATT 661 GTTAGACTTT TGAGAATCAT TACACTTTTT GTGAGATTGG TGATTACTTT AAGATCTTTT 721 GCAGTGATAT T Predicted gene structure (within gDNA segment 148210 to 143607): Exon 1 147477 147471 ( 7 n); cDNA 107 113 ( 7 n); score: 1.000 Intron 1 147470 146499 ( 972 n); Pd: 0.593 (s: 0), Pa: 0.998 (s: 0.89) Exon 2 146498 145942 ( 557 n); cDNA 114 652 ( 539 n); score: 0.830 MATCH C04HBa0031H05.1- SGN-E261921+ 0.830 564 0.772 C PGS_C04HBa0031H05.1-_SGN-E261921+ (147477 147471,146498 145942) Alignment (genomic DNA sequence = upper lines): TTTTAAGGTG ATAGCTTGGT CCATCTGTAC CAGGGATATC CTTAATTCTC CATCTGTCAA 147418 ||||||| TTTTAAG... .......... .......... .......... .......... .......... 113 CCCAGCTGGG TTACAAGCAT CTCCATTTCA CCAGTTGGGG CCTGGGGAGG AATTTGGTTG 147358 .......... .......... .......... .......... .......... .......... 113 CCCTAGCAAC TGCTTCTCCT CGTCCCTGAC CACTGTTCCT CTTTGTGTTC ATTTTTTTTG 147298 .......... .......... .......... .......... .......... .......... 113 AAAAAGTAGA ATTGATGTTC GATAAGCTCA TAACACCAAG GAATCAGACA TTAGAGAAGG 147238 .......... .......... .......... .......... .......... .......... 113 CACGATAAGA TAGAAGAAGG GAATTTTCCT ACGCATCATG CAGTCTCTAA TTTAGGATAG 147178 .......... .......... .......... .......... .......... .......... 113 TGGTGCACTT CACTACCATG ACTTAGAAAC TACTCAATGT GGTTGATGTG AACTTATTAT 147118 .......... .......... .......... .......... .......... .......... 113 ACTCGGAATT TAACCTAATT CTTTGATACC AACTTGGTCA TGACCGGAAT CTAGACCCCA 147058 .......... .......... .......... .......... .......... .......... 113 GACGATATCA GCGTCGTTGA CCTCTCTGAG GTCGCAGACA AGCCTACTTA CGTCATTCTT 146998 .......... .......... .......... .......... .......... .......... 113 ACTTCATCTG GATTAATTAT AGCAGAAAAT TTGAAACTTT TTGTTTCTTA ACATACTAAT 146938 .......... .......... .......... .......... .......... .......... 113 AATTCTATTA AATTCATAAT TTTTCATCCT CAACCATCTA ACATTAATAT AATCAAATGA 146878 .......... .......... .......... .......... .......... .......... 113 AAGAAATAGT TTAATATAGC ATTAAATGTA TACTTGCCAA AATGGCACGA TACGATGTCT 146818 .......... .......... .......... .......... .......... .......... 113 GAAGAAAAAT AGAAAGAAAC ACTAGTGGAA CATGCTCCAC TAACTATAGC CTACATCTAA 146758 .......... .......... .......... .......... .......... .......... 113 GCTAGATAAA AATGGTATAC ATCATCGAAT GCATGAGAGC CTACGAAGTC GGGATGAAAG 146698 .......... .......... .......... .......... .......... .......... 113 CTCCACGTCC AGATAACTGC AACGCCAACC TGTAAGCTCT AGCGTCCACC TGTGCCTGCA 146638 .......... .......... .......... .......... .......... .......... 113 CCTAAAATTG TAGAATTGTA TGGGATTAGT ATTGATATAC CGTGGTTTCA CGGTATAATT 146578 .......... .......... .......... .......... .......... .......... 113 AATACTTTTT CCTTAAGTTT AGTGTGTCCG AAAGCCCTTT TTGTGCTAAT TTTGATATAA 146518 .......... .......... .......... .......... .......... .......... 113 GTTTCTCTTT GTTTTGCAGG AAATCTGTCC AAAGCTGAAT GCGGAGATTT TAAGCGAA-A 146459 | |||||||||| |||| ||||| |||||||||| | || ||| | .......... .........G AAATCTGTCC AAAGATGAAT GCGGAGATTT TGAGTGAAGA 154 AATGCAGAAG AGGCCACCTA CGGAGCTTAT GACGGTCCGT CGTGCCTGTG ACAGTCCGTA 146399 ||||||||| || | ||||| | |||||||| |||||||||| ||||| |||| || ||| ||| AATGCAGAAT AGACGACCTA CAGAGCTTAT GACGGTCCGT CGTGCTTGTG ACGGTCTGTA 214 GGTGGCAGCG TAGAGAAGCT GCTGAAGGAA GATAGGGAAG TCTGACCAAG TGTGGGATTA 146339 |||||||||| ||| | |||| |||||| ||| ||| |||||| |||||||||| || || GGTGGCAGCG TAGTGCAGCT GCTGAAAGAA GATGGGGAAG TCTGACCAAG TG-CGG---- 269 CGAAGCTTGT GACGGTCAGT CATGGCTATG ACGGTCCGTC CTGCAGGTAC ATCGTGAAGA 146279 | || | |||| ||| | | ||| |||||||||| |||||||| | || ||||| -G--GC---T -ACGG--AGT --T--C-ATG ACGGTCCGTC CTGCAGGTTC GTCATGAAGT 315 TCAGAGAAGT GATCCCAGTA CCAAGATTCC AAGATTTGAA GTATTTTGAA ACG-AGACCC 146220 |||||||||| |||||||| || | ||||| |||| || || || | ||||| ||| |||||| TCAGAGAAGT AGTCCCAGTA CCCATATTCC AAGAGTTCAA GTGTGTTGAA ACGAAGACCC 375 TCGATGAACC GTTGTGCTTA TGACGGTCCG TCACACTTGC CGTCGAGGGA AATGAAGAAA 146160 ||||| ||| ||||||| || |||||||||| ||| || ||| ||||||||| |||||||| | TCGATAGACC GTTGTGCCTA TGACGGTCCG TCATACCTGC CGTCGAGGGT AATGAAGAGA 435 GCAGCAGAAG -AATTGCACC AAGTATGGGA CGACGGAGTC CACGACGGTC CGTCATGACC 146101 | |||| ||| ||||||| |||||||||| |||| ||||| || ||||||| | || ||||| GAAGCAAAAG AAATTGCA-T AAGTATGGGA CGACAGAGTC CATGACGGTC CATCGTGACC 494 ACGACGGTCC ATCGCGTAGT CCGTCGACCC AGCCGCGTTT TGGCAGATTT CCAGTAATTA 146041 | |||| ||| ||| | | | |||||||| |||||||||| |||||||||| |||| || || ATGACGATCC GTCGTGAGTT CTGTCGACCC AGCCGCGTTT TGGCAGATTT CCAGCAAATA 554 GAATCCTTGT TTAATTAGGT TTTTATTTTT TTATAAATAG TTCAAAAAAC CTCGTTTTTT 145981 || ||||||| ||| |||||| ||||| |||| ||||||||| ||| |||||| ||||||||| GAGTCCTTGT TTAGTTAGGT TTTTA-TTTT CTATAAATAG TTCGAAAAAC CTCGTTTTTG 613 AGGTTAGACT CTGTGATATT AAACCTTATA TTGCTAGAC 145942 |||||| ||| | || | || | || | ||| || ||||| AGGTTATACT CCGTATTGTT AGACATCATA TTAGTAGAC 652 hqPGS_C04HBa0031H05.1-_SGN-E261921+ (146498 145942) ******************************************************************************** EST sequence 96 +strand 787 n (File: SGN-E369291+) 1 TATGGACGTA TGGTGCAAGG TTTATCTCAC GAAAAAGATA TACTGGTGGT CATGTTCTCA 61 ATGTTTTCGA CGCCAAGCAT CTCCATTCAG TAGTAAGCGA TTTACTTTTT AAGGAAATCT 121 GTCCAAAGAT GAATGCGGAG ATTTTGAGTG AAGAAATGCA GAATAGACGA CCTACAGAGC 181 TTATGACGGT CCGTCGTGCT TGTGACGGTC TGTAGGTGGC AGCGTAGTGC AGCTGCTGAA 241 AGAAGATGGG GAAGTCTGAC CAAGTGCGGG GCTACGGAGT TCATGACGGT CCGTCCTGCA 301 GGTTCGTCAT GAAGTTCAGA GAAGTAGTCC CAGTACCCAT ATTCCAAGAG TTCAAGTGTG 361 TTGAAACGAA GACCCTCGAT AGACCGTTGT GCCTATGACG GTCCGTCATA CCTGCCGTCG 421 AGGGTAATGA AGAGAGAAGC AAAAGAAATT GCATAAGTAT GGGACGACAG AGTCCATGAC 481 GGTCCATCGT GACCATGACG ATCCGTCGTG AGTTCTGTCG ACCCAGCCGC GTTTTGGCAG 541 ATTTCCAGCA AATAGAGTCC TTGTTTAGTT AGGTTTTTAT TTTCTATAAA TAGTTCGAAA 601 AACCTCGTTT TTGAGGTTAT ACTCCGTATT GTTAGACATC ATATTAGTAG ACACTGTATT 661 GTTAGACTTT TGAGAATCAT TACACTTTTT GTGAGATTGT TGATTACTTT AAGATTCTTT 721 GCAGTGATTA TTGGTGATTA ATCAACCAAA CTTTTTGAAT TTTAAAAAAA AAAAAAAAAA 781 AAAAAAA Predicted gene structure (within gDNA segment 148210 to 142447): Exon 1 147477 147471 ( 7 n); cDNA 107 113 ( 7 n); score: 1.000 Intron 1 147470 146499 ( 972 n); Pd: 0.593 (s: 0), Pa: 0.998 (s: 0.89) Exon 2 146498 145942 ( 557 n); cDNA 114 652 ( 539 n); score: 0.830 PPA cDNA 764 787 MATCH C04HBa0031H05.1- SGN-E369291+ 0.830 564 0.717 C PGS_C04HBa0031H05.1-_SGN-E369291+ (147477 147471,146498 145942) Alignment (genomic DNA sequence = upper lines): TTTTAAGGTG ATAGCTTGGT CCATCTGTAC CAGGGATATC CTTAATTCTC CATCTGTCAA 147418 ||||||| TTTTAAG... .......... .......... .......... .......... .......... 113 CCCAGCTGGG TTACAAGCAT CTCCATTTCA CCAGTTGGGG CCTGGGGAGG AATTTGGTTG 147358 .......... .......... .......... .......... .......... .......... 113 CCCTAGCAAC TGCTTCTCCT CGTCCCTGAC CACTGTTCCT CTTTGTGTTC ATTTTTTTTG 147298 .......... .......... .......... .......... .......... .......... 113 AAAAAGTAGA ATTGATGTTC GATAAGCTCA TAACACCAAG GAATCAGACA TTAGAGAAGG 147238 .......... .......... .......... .......... .......... .......... 113 CACGATAAGA TAGAAGAAGG GAATTTTCCT ACGCATCATG CAGTCTCTAA TTTAGGATAG 147178 .......... .......... .......... .......... .......... .......... 113 TGGTGCACTT CACTACCATG ACTTAGAAAC TACTCAATGT GGTTGATGTG AACTTATTAT 147118 .......... .......... .......... .......... .......... .......... 113 ACTCGGAATT TAACCTAATT CTTTGATACC AACTTGGTCA TGACCGGAAT CTAGACCCCA 147058 .......... .......... .......... .......... .......... .......... 113 GACGATATCA GCGTCGTTGA CCTCTCTGAG GTCGCAGACA AGCCTACTTA CGTCATTCTT 146998 .......... .......... .......... .......... .......... .......... 113 ACTTCATCTG GATTAATTAT AGCAGAAAAT TTGAAACTTT TTGTTTCTTA ACATACTAAT 146938 .......... .......... .......... .......... .......... .......... 113 AATTCTATTA AATTCATAAT TTTTCATCCT CAACCATCTA ACATTAATAT AATCAAATGA 146878 .......... .......... .......... .......... .......... .......... 113 AAGAAATAGT TTAATATAGC ATTAAATGTA TACTTGCCAA AATGGCACGA TACGATGTCT 146818 .......... .......... .......... .......... .......... .......... 113 GAAGAAAAAT AGAAAGAAAC ACTAGTGGAA CATGCTCCAC TAACTATAGC CTACATCTAA 146758 .......... .......... .......... .......... .......... .......... 113 GCTAGATAAA AATGGTATAC ATCATCGAAT GCATGAGAGC CTACGAAGTC GGGATGAAAG 146698 .......... .......... .......... .......... .......... .......... 113 CTCCACGTCC AGATAACTGC AACGCCAACC TGTAAGCTCT AGCGTCCACC TGTGCCTGCA 146638 .......... .......... .......... .......... .......... .......... 113 CCTAAAATTG TAGAATTGTA TGGGATTAGT ATTGATATAC CGTGGTTTCA CGGTATAATT 146578 .......... .......... .......... .......... .......... .......... 113 AATACTTTTT CCTTAAGTTT AGTGTGTCCG AAAGCCCTTT TTGTGCTAAT TTTGATATAA 146518 .......... .......... .......... .......... .......... .......... 113 GTTTCTCTTT GTTTTGCAGG AAATCTGTCC AAAGCTGAAT GCGGAGATTT TAAGCGAA-A 146459 | |||||||||| |||| ||||| |||||||||| | || ||| | .......... .........G AAATCTGTCC AAAGATGAAT GCGGAGATTT TGAGTGAAGA 154 AATGCAGAAG AGGCCACCTA CGGAGCTTAT GACGGTCCGT CGTGCCTGTG ACAGTCCGTA 146399 ||||||||| || | ||||| | |||||||| |||||||||| ||||| |||| || ||| ||| AATGCAGAAT AGACGACCTA CAGAGCTTAT GACGGTCCGT CGTGCTTGTG ACGGTCTGTA 214 GGTGGCAGCG TAGAGAAGCT GCTGAAGGAA GATAGGGAAG TCTGACCAAG TGTGGGATTA 146339 |||||||||| ||| | |||| |||||| ||| ||| |||||| |||||||||| || || GGTGGCAGCG TAGTGCAGCT GCTGAAAGAA GATGGGGAAG TCTGACCAAG TG-CGG---- 269 CGAAGCTTGT GACGGTCAGT CATGGCTATG ACGGTCCGTC CTGCAGGTAC ATCGTGAAGA 146279 | || | |||| ||| | | ||| |||||||||| |||||||| | || ||||| -G--GC---T -ACGG--AGT --T--C-ATG ACGGTCCGTC CTGCAGGTTC GTCATGAAGT 315 TCAGAGAAGT GATCCCAGTA CCAAGATTCC AAGATTTGAA GTATTTTGAA ACG-AGACCC 146220 |||||||||| |||||||| || | ||||| |||| || || || | ||||| ||| |||||| TCAGAGAAGT AGTCCCAGTA CCCATATTCC AAGAGTTCAA GTGTGTTGAA ACGAAGACCC 375 TCGATGAACC GTTGTGCTTA TGACGGTCCG TCACACTTGC CGTCGAGGGA AATGAAGAAA 146160 ||||| ||| ||||||| || |||||||||| ||| || ||| ||||||||| |||||||| | TCGATAGACC GTTGTGCCTA TGACGGTCCG TCATACCTGC CGTCGAGGGT AATGAAGAGA 435 GCAGCAGAAG -AATTGCACC AAGTATGGGA CGACGGAGTC CACGACGGTC CGTCATGACC 146101 | |||| ||| ||||||| |||||||||| |||| ||||| || ||||||| | || ||||| GAAGCAAAAG AAATTGCA-T AAGTATGGGA CGACAGAGTC CATGACGGTC CATCGTGACC 494 ACGACGGTCC ATCGCGTAGT CCGTCGACCC AGCCGCGTTT TGGCAGATTT CCAGTAATTA 146041 | |||| ||| ||| | | | |||||||| |||||||||| |||||||||| |||| || || ATGACGATCC GTCGTGAGTT CTGTCGACCC AGCCGCGTTT TGGCAGATTT CCAGCAAATA 554 GAATCCTTGT TTAATTAGGT TTTTATTTTT TTATAAATAG TTCAAAAAAC CTCGTTTTTT 145981 || ||||||| ||| |||||| ||||| |||| ||||||||| ||| |||||| ||||||||| GAGTCCTTGT TTAGTTAGGT TTTTA-TTTT CTATAAATAG TTCGAAAAAC CTCGTTTTTG 613 AGGTTAGACT CTGTGATATT AAACCTTATA TTGCTAGAC 145942 |||||| ||| | || | || | || | ||| || ||||| AGGTTATACT CCGTATTGTT AGACATCATA TTAGTAGAC 652 hqPGS_C04HBa0031H05.1-_SGN-E369291+ (146498 145942) ******************************************************************************** EST sequence 63 -strand 737 n (File: SGN-E369290-) 1 GTCATGTTCT CAATGTTTTC GACGCCAAGC ATCTCCATTC AGTAGTAAGC GATTTACTTT 61 TTAAGGAAAT CTGTCCAAAG ATGAATGCGG AGATTTTGAG TGAAGAAATG CAGAATAGAC 121 GACCTACAGA GCTTATGACG GTCCGTCGTG CTTGTGACGG TCTGTAGGTG GCAGCGTAGT 181 GCAGCTGCTG AAAGAAGATG GGGAAGTCTG ACCAAGTGCG GGGCTACGGA GTTCATGACG 241 GTCCGTCCTG CAGGTTCGTC ATGAAGTTCA GAGAAGTAGT CCCAGTACCC ATATTCCAAG 301 AGTTCAAGTG TGTTGAAACG AAGACCCTCG ATAGACCGTT GTGCCTATGA CGGTCCGTCA 361 TACCTGCCGT CGAGGGTAAT GAAGAGAGAA GCAAAAGAAA TTGCATAAGT ATGGGACGAC 421 AGAGTCCATG ACGGTCCATC GTGACCATGA CGATCCGTCG TGAGTTCTGT CGACCCAGCC 481 GCGTTTTGGC AGATTTCCAG CAAATAGAGT CCTTGTTTAG TTAGGTTTTT ATTTTCTATA 541 AATAGTTCGA AAAACCTCGT TTTTGAGGTT ATACTCCGTA TTGTTAGACA TCATATTAGT 601 AGACACTGTA TTGTTAGACT TTTGAGAATC ATTACACTTT TTGTGAGATT GTTGATTACT 661 TTAAGATTCT TGCAAGTGAT TATTGGTGAT TAATCAAGCA AACTTTTGGA TTTTAAAAAA 721 AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 147740 to 143077): Exon 1 146498 145942 ( 557 n); cDNA 66 604 ( 539 n); score: 0.830 PPA cDNA 715 737 MATCH C04HBa0031H05.1- SGN-E369290- 0.830 557 0.756 C PGS_C04HBa0031H05.1-_SGN-E369290- (146498 145942) Alignment (genomic DNA sequence = upper lines): GAAATCTGTC CAAAGCTGAA TGCGGAGATT TTAAGCGAA- AAATGCAGAA GAGGCCACCT 146440 |||||||||| ||||| |||| |||||||||| || || ||| |||||||||| || | |||| GAAATCTGTC CAAAGATGAA TGCGGAGATT TTGAGTGAAG AAATGCAGAA TAGACGACCT 125 ACGGAGCTTA TGACGGTCCG TCGTGCCTGT GACAGTCCGT AGGTGGCAGC GTAGAGAAGC 146380 || ||||||| |||||||||| |||||| ||| ||| ||| || |||||||||| |||| | ||| ACAGAGCTTA TGACGGTCCG TCGTGCTTGT GACGGTCTGT AGGTGGCAGC GTAGTGCAGC 185 TGCTGAAGGA AGATAGGGAA GTCTGACCAA GTGTGGGATT ACGAAGCTTG TGACGGTCAG 146320 ||||||| || |||| ||||| |||||||||| ||| || | || | |||| || TGCTGAAAGA AGATGGGGAA GTCTGACCAA GTG-CGG--- --G--GC--- T-ACGG--AG 231 TCATGGCTAT GACGGTCCGT CCTGCAGGTA CATCGTGAAG ATCAGAGAAG TGATCCCAGT 146260 | | | || |||||||||| ||||||||| | || ||||| ||||||||| | ||||||| T--T--C-AT GACGGTCCGT CCTGCAGGTT CGTCATGAAG TTCAGAGAAG TAGTCCCAGT 286 ACCAAGATTC CAAGATTTGA AGTATTTTGA AACG-AGACC CTCGATGAAC CGTTGTGCTT 146201 ||| | |||| ||||| || | ||| | |||| |||| ||||| |||||| || |||||||| | ACCCATATTC CAAGAGTTCA AGTGTGTTGA AACGAAGACC CTCGATAGAC CGTTGTGCCT 346 ATGACGGTCC GTCACACTTG CCGTCGAGGG AAATGAAGAA AGCAGCAGAA G-AATTGCAC 146142 |||||||||| |||| || || |||||||||| |||||||| || |||| || | ||||||| ATGACGGTCC GTCATACCTG CCGTCGAGGG TAATGAAGAG AGAAGCAAAA GAAATTGCA- 405 CAAGTATGGG ACGACGGAGT CCACGACGGT CCGTCATGAC CACGACGGTC CATCGCGTAG 146082 ||||||||| ||||| |||| ||| |||||| || || |||| || |||| || | ||| | TAAGTATGGG ACGACAGAGT CCATGACGGT CCATCGTGAC CATGACGATC CGTCGTGAGT 465 TCCGTCGACC CAGCCGCGTT TTGGCAGATT TCCAGTAATT AGAATCCTTG TTTAATTAGG 146022 || ||||||| |||||||||| |||||||||| ||||| || | ||| |||||| |||| ||||| TCTGTCGACC CAGCCGCGTT TTGGCAGATT TCCAGCAAAT AGAGTCCTTG TTTAGTTAGG 525 TTTTTATTTT TTTATAAATA GTTCAAAAAA CCTCGTTTTT TAGGTTAGAC TCTGTGATAT 145962 |||||| ||| | |||||||| |||| ||||| |||||||||| |||||| || || || | | TTTTTA-TTT TCTATAAATA GTTCGAAAAA CCTCGTTTTT GAGGTTATAC TCCGTATTGT 584 TAAACCTTAT ATTGCTAGAC 145942 || || | || ||| ||||| TAGACATCAT ATTAGTAGAC 604 hqPGS_C04HBa0031H05.1-_SGN-E369290- (146498 145942) ******************************************************************************** EST sequence 58 -strand 746 n (File: SGN-E546025-) 1 GAAGACCAGT AACTCAAGCT GAGGCATTCA AGGCAACACA CATAAGAAAG AAGAAAAATN 61 CCGAAGATCC AGACGTGTGG ATTGAGCCGC GAGCTGAAGT GATCATGAAA TTTGTCCAAA 121 GCCAAATGCG GAGATTTTGA GAGAAGAAAT GCAGAAGAGA CCACCTATGG AGCTGATGAC 181 GGTCCGTCGT GCTTGTGACG GTCCGTAGGT GGCAGTGTAG AGAAGTTGCT GAAGGAAGAT 241 GGGGAAGTCT GACCAAGTGT GGGATTACGA AGCTTGTGAC GGTCCGTCAT GGCTATGACG 301 GTCTGTTCTG CAGGTTCGTC GTGGAGTTCA GAGAAGTAAT CCAGTACCTA GATTCCGAGA 361 GTTGAAGTAT TTTGAAACGA AGACCCTTGA CAGACCGTTG TGCCTATGAC AGTCCGTCAT 421 ACTTGCCGTC GAGGGGAATG AAGAGAGCAG CAGAAGAAAG TGCACAAGTA TGGGACGACG 481 GAGTCCATGA CGGTCCGTCA TGACCACGAC GGTCCGTCGC ATGGTCCGTC GACCCAGCCG 541 CGTTTTGGCA GATTTCCACC AATTAGAATT CTTGTGTAAT TAGGTTTTTA TTTTTATATA 601 AATAGTTCGA AAAACCTCAT TTTTGAGGTT AGACACCTGA TAGTTAGACT CTTAGATTGT 661 TAAAACTTCG TATTGGTGAA CATTGTATTG GAAAATTCTT GATAATCATT AGACTTTTCG 721 TGAGATTATT GATTAAAAAA AAAAAA Predicted gene structure (within gDNA segment 149384 to 143901): Exon 1 147913 147908 ( 6 n); cDNA 101 106 ( 6 n); score: 1.000 Intron 1 147907 146499 (1409 n); Pd: 0.000 (s: 0), Pa: 0.998 (s: 0.85) Exon 2 146498 145945 ( 554 n); cDNA 107 662 ( 556 n); score: 0.880 PPA cDNA 735 746 MATCH C04HBa0031H05.1- SGN-E546025- 0.880 560 0.751 C PGS_C04HBa0031H05.1-_SGN-E546025- (147913 147908,146498 145945) Alignment (genomic DNA sequence = upper lines): GATCATGAAG AACGTCAGGA AATATCTAAA AGTGAGAGCA ATCAAAGGAA TTACAAAGGA 147854 |||||| GATCAT.... .......... .......... .......... .......... .......... 106 AAGCGTAGAC CCTTAGATGA ACTTGACTCC CCTTGGTGTA AGATTCCCTT CTTAAACCTA 147794 .......... .......... .......... .......... .......... .......... 106 GGCTTATCCT TGATTTCAGT ACTACTCTTC CTTAAGAAAT TCTTATGAGC TTGCCTTGAC 147734 .......... .......... .......... .......... .......... .......... 106 TTGTTCCTTC CTTAGTATGC TTCCTCTTCC TGCCTTCCTC CACTTGTTGG ACACGGACCA 147674 .......... .......... .......... .......... .......... .......... 106 TAAGCATGGA AAGTCCCATG CTGGCATGCA ACATAGCTAT CCTGCACTTC TCCTCGAGAT 147614 .......... .......... .......... .......... .......... .......... 106 TCTCAGCAAT CTGAGATCCT GTGTAAATGG GAGAATTTAG CCTCGTGAAG TCCCTTAACC 147554 .......... .......... .......... .......... .......... .......... 106 TGTTAGTCAT GGTACTAGAA TGTGGGTTCT TCTTGGGAAT ACCTTGTTGC TTTTCCTTGG 147494 .......... .......... .......... .......... .......... .......... 106 CTATCACAGC CTGAGCTTTT AAGGTGATAG CTTGGTCCAT CTGTACCAGG GATATCCTTA 147434 .......... .......... .......... .......... .......... .......... 106 ATTCTCCATC TGTCAACCCA GCTGGGTTAC AAGCATCTCC ATTTCACCAG TTGGGGCCTG 147374 .......... .......... .......... .......... .......... .......... 106 GGGAGGAATT TGGTTGCCCT AGCAACTGCT TCTCCTCGTC CCTGACCACT GTTCCTCTTT 147314 .......... .......... .......... .......... .......... .......... 106 GTGTTCATTT TTTTTGAAAA AGTAGAATTG ATGTTCGATA AGCTCATAAC ACCAAGGAAT 147254 .......... .......... .......... .......... .......... .......... 106 CAGACATTAG AGAAGGCACG ATAAGATAGA AGAAGGGAAT TTTCCTACGC ATCATGCAGT 147194 .......... .......... .......... .......... .......... .......... 106 CTCTAATTTA GGATAGTGGT GCACTTCACT ACCATGACTT AGAAACTACT CAATGTGGTT 147134 .......... .......... .......... .......... .......... .......... 106 GATGTGAACT TATTATACTC GGAATTTAAC CTAATTCTTT GATACCAACT TGGTCATGAC 147074 .......... .......... .......... .......... .......... .......... 106 CGGAATCTAG ACCCCAGACG ATATCAGCGT CGTTGACCTC TCTGAGGTCG CAGACAAGCC 147014 .......... .......... .......... .......... .......... .......... 106 TACTTACGTC ATTCTTACTT CATCTGGATT AATTATAGCA GAAAATTTGA AACTTTTTGT 146954 .......... .......... .......... .......... .......... .......... 106 TTCTTAACAT ACTAATAATT CTATTAAATT CATAATTTTT CATCCTCAAC CATCTAACAT 146894 .......... .......... .......... .......... .......... .......... 106 TAATATAATC AAATGAAAGA AATAGTTTAA TATAGCATTA AATGTATACT TGCCAAAATG 146834 .......... .......... .......... .......... .......... .......... 106 GCACGATACG ATGTCTGAAG AAAAATAGAA AGAAACACTA GTGGAACATG CTCCACTAAC 146774 .......... .......... .......... .......... .......... .......... 106 TATAGCCTAC ATCTAAGCTA GATAAAAATG GTATACATCA TCGAATGCAT GAGAGCCTAC 146714 .......... .......... .......... .......... .......... .......... 106 GAAGTCGGGA TGAAAGCTCC ACGTCCAGAT AACTGCAACG CCAACCTGTA AGCTCTAGCG 146654 .......... .......... .......... .......... .......... .......... 106 TCCACCTGTG CCTGCACCTA AAATTGTAGA ATTGTATGGG ATTAGTATTG ATATACCGTG 146594 .......... .......... .......... .......... .......... .......... 106 GTTTCACGGT ATAATTAATA CTTTTTCCTT AAGTTTAGTG TGTCCGAAAG CCCTTTTTGT 146534 .......... .......... .......... .......... .......... .......... 106 GCTAATTTTG ATATAAGTTT CTCTTTGTTT TGCAGGAAAT CTGTCCAAAG CTGAATGCGG 146474 ||||| ||||||||| | ||||||| .......... .......... .......... .....GAAAT TTGTCCAAAG CCAAATGCGG 131 AGATTTTAAG CGAA-AAATG CAGAAGAGGC CACCTACGGA GCTTATGACG GTCCGTCGTG 146415 ||||||| || ||| ||||| |||||||| | |||||| ||| ||| |||||| |||||||||| AGATTTTGAG AGAAGAAATG CAGAAGAGAC CACCTATGGA GCTGATGACG GTCCGTCGTG 191 CCTGTGACAG TCCGTAGGTG GCAGCGTAGA GAAGCTGCTG AAGGAAGATA GGGAAGTCTG 146355 | |||||| | |||||||||| |||| ||||| |||| ||||| ||||||||| |||||||||| CTTGTGACGG TCCGTAGGTG GCAGTGTAGA GAAGTTGCTG AAGGAAGATG GGGAAGTCTG 251 ACCAAGTGTG GGATTACGAA GCTTGTGACG GTCAGTCATG GCTATGACGG TCCGTCCTGC 146295 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| || || |||| ACCAAGTGTG GGATTACGAA GCTTGTGACG GTCCGTCATG GCTATGACGG TCTGTTCTGC 311 AGGTACATCG TGAAGATCAG AGAAGTGATC CCAGTACCAA GATTCCAAGA TTTGAAGTAT 146235 |||| | ||| || || |||| |||||| || |||||||| | |||||| ||| ||||||||| AGGTTCGTCG TGGAGTTCAG AGAAGTAAT- CCAGTACCTA GATTCCGAGA GTTGAAGTAT 370 TTTGAAACG- AGACCCTCGA TGAACCGTTG TGCTTATGAC GGTCCGTCAC ACTTGCCGTC 146176 ||||||||| ||||||| || ||||||| ||| |||||| |||||||| |||||||||| TTTGAAACGA AGACCCTTGA CAGACCGTTG TGCCTATGAC AGTCCGTCAT ACTTGCCGTC 430 GAGGGAAATG AAGAAAGCAG CAGAAGAA-T TGCACCAAGT ATGGGACGAC GGAGTCCACG 146117 ||||| |||| |||| ||||| |||||||| |||| ||||| |||||||||| |||||||| | GAGGGGAATG AAGAGAGCAG CAGAAGAAAG TGCA-CAAGT ATGGGACGAC GGAGTCCATG 489 ACGGTCCGTC ATGACCACGA CGGTCCATCG CGTAGTCCGT CGACCCAGCC GCGTTTTGGC 146057 |||||||||| |||||||||| |||||| ||| | | |||||| |||||||||| |||||||||| ACGGTCCGTC ATGACCACGA CGGTCCGTCG CATGGTCCGT CGACCCAGCC GCGTTTTGGC 549 AGATTTCCAG TAATTAGAAT CCTTGTTTAA TTAGGTTTTT ATTTTTTTAT AAATAGTTCA 145997 ||||||||| ||||||||| ||||| ||| |||||||||| |||||| ||| ||||||||| AGATTTCCAC CAATTAGAAT TCTTGTGTAA TTAGGTTTTT ATTTTTATAT AAATAGTTCG 609 AAAAACCTCG TTTTTTAGGT TAGACTCTGT GATA-TTAAA C-CTTATATT GCTA 145945 ||||||||| ||||| |||| ||||| | | |||| ||| | | |||| ||| | || AAAAACCTCA TTTTTGAGGT TAGACAC-CT GATAGTTAGA CTCTTAGATT GTTA 662 hqPGS_C04HBa0031H05.1-_SGN-E546025- (146498 145945) ******************************************************************************** EST sequence 90 +strand 582 n (File: SGN-E322644+) 1 ATGCTTTGGC TATCTGGTAT GGACGTATGG TGCAAGGTTT ATCTCACGAA AAAGATATAC 61 TGGTGGTCAT GTTCTCAATG TTTTCGACGC CAAGCATCTC CATTCAGTAG TAAGCGATTT 121 ACTTTTTAAG GAAATCTGTC CAAAGATGAA TGCGGAGATT TTGAGTGAAG AAATGCAGAA 181 TAGACGACCT ACAGAGCTTA TGACGGTCCG TCGTGCTTGT GACGGTCTGT AGGTGGCAGC 241 GTAGTGCAGC TGCTGAAAGA AGATGGGGAA GTCTGACCAA GTGCGGGGCT ACGGAGTTCA 301 TGACGGTCCG TCCTGCAGGT TCGTCATGAA GTTCAGAGAA GTAGTCCCAG TACCCATATT 361 CCAAGAGTTC AAGTGTGTTG AAACGAAGAC CCTCGATAGA CCGTTGTGCC TATGACGGTC 421 CGTCATACCT GCCGTCGAGG GTAATGAAGA GAGAAGCAAA AGAAATTGCA TAAGTATGGG 481 ACGACAGAGT CCATGACGGT CCATCGTGAC CATGACGATC CGTCGTGAGT TCTGTCGACC 541 CAGCCGCGTT TTGGCAGATT TCCAGCAAAT AGAGTCCTTG TT Predicted gene structure (within gDNA segment 148380 to 145267): Exon 1 147477 147471 ( 7 n); cDNA 124 130 ( 7 n); score: 1.000 Intron 1 147470 146499 ( 972 n); Pd: 0.593 (s: 0), Pa: 0.998 (s: 0.89) Exon 2 146498 146030 ( 469 n); cDNA 131 582 ( 452 n); score: 0.830 MATCH C04HBa0031H05.1- SGN-E322644+ 0.830 476 0.818 C PGS_C04HBa0031H05.1-_SGN-E322644+ (147477 147471,146498 146030) Alignment (genomic DNA sequence = upper lines): TTTTAAGGTG ATAGCTTGGT CCATCTGTAC CAGGGATATC CTTAATTCTC CATCTGTCAA 147418 ||||||| TTTTAAG... .......... .......... .......... .......... .......... 130 CCCAGCTGGG TTACAAGCAT CTCCATTTCA CCAGTTGGGG CCTGGGGAGG AATTTGGTTG 147358 .......... .......... .......... .......... .......... .......... 130 CCCTAGCAAC TGCTTCTCCT CGTCCCTGAC CACTGTTCCT CTTTGTGTTC ATTTTTTTTG 147298 .......... .......... .......... .......... .......... .......... 130 AAAAAGTAGA ATTGATGTTC GATAAGCTCA TAACACCAAG GAATCAGACA TTAGAGAAGG 147238 .......... .......... .......... .......... .......... .......... 130 CACGATAAGA TAGAAGAAGG GAATTTTCCT ACGCATCATG CAGTCTCTAA TTTAGGATAG 147178 .......... .......... .......... .......... .......... .......... 130 TGGTGCACTT CACTACCATG ACTTAGAAAC TACTCAATGT GGTTGATGTG AACTTATTAT 147118 .......... .......... .......... .......... .......... .......... 130 ACTCGGAATT TAACCTAATT CTTTGATACC AACTTGGTCA TGACCGGAAT CTAGACCCCA 147058 .......... .......... .......... .......... .......... .......... 130 GACGATATCA GCGTCGTTGA CCTCTCTGAG GTCGCAGACA AGCCTACTTA CGTCATTCTT 146998 .......... .......... .......... .......... .......... .......... 130 ACTTCATCTG GATTAATTAT AGCAGAAAAT TTGAAACTTT TTGTTTCTTA ACATACTAAT 146938 .......... .......... .......... .......... .......... .......... 130 AATTCTATTA AATTCATAAT TTTTCATCCT CAACCATCTA ACATTAATAT AATCAAATGA 146878 .......... .......... .......... .......... .......... .......... 130 AAGAAATAGT TTAATATAGC ATTAAATGTA TACTTGCCAA AATGGCACGA TACGATGTCT 146818 .......... .......... .......... .......... .......... .......... 130 GAAGAAAAAT AGAAAGAAAC ACTAGTGGAA CATGCTCCAC TAACTATAGC CTACATCTAA 146758 .......... .......... .......... .......... .......... .......... 130 GCTAGATAAA AATGGTATAC ATCATCGAAT GCATGAGAGC CTACGAAGTC GGGATGAAAG 146698 .......... .......... .......... .......... .......... .......... 130 CTCCACGTCC AGATAACTGC AACGCCAACC TGTAAGCTCT AGCGTCCACC TGTGCCTGCA 146638 .......... .......... .......... .......... .......... .......... 130 CCTAAAATTG TAGAATTGTA TGGGATTAGT ATTGATATAC CGTGGTTTCA CGGTATAATT 146578 .......... .......... .......... .......... .......... .......... 130 AATACTTTTT CCTTAAGTTT AGTGTGTCCG AAAGCCCTTT TTGTGCTAAT TTTGATATAA 146518 .......... .......... .......... .......... .......... .......... 130 GTTTCTCTTT GTTTTGCAGG AAATCTGTCC AAAGCTGAAT GCGGAGATTT TAAGCGAA-A 146459 | |||||||||| |||| ||||| |||||||||| | || ||| | .......... .........G AAATCTGTCC AAAGATGAAT GCGGAGATTT TGAGTGAAGA 171 AATGCAGAAG AGGCCACCTA CGGAGCTTAT GACGGTCCGT CGTGCCTGTG ACAGTCCGTA 146399 ||||||||| || | ||||| | |||||||| |||||||||| ||||| |||| || ||| ||| AATGCAGAAT AGACGACCTA CAGAGCTTAT GACGGTCCGT CGTGCTTGTG ACGGTCTGTA 231 GGTGGCAGCG TAGAGAAGCT GCTGAAGGAA GATAGGGAAG TCTGACCAAG TGTGGGATTA 146339 |||||||||| ||| | |||| |||||| ||| ||| |||||| |||||||||| || || GGTGGCAGCG TAGTGCAGCT GCTGAAAGAA GATGGGGAAG TCTGACCAAG TG-CGG---- 286 CGAAGCTTGT GACGGTCAGT CATGGCTATG ACGGTCCGTC CTGCAGGTAC ATCGTGAAGA 146279 | || | |||| ||| | | ||| |||||||||| |||||||| | || ||||| -G--GC---T -ACGG--AGT --T--C-ATG ACGGTCCGTC CTGCAGGTTC GTCATGAAGT 332 TCAGAGAAGT GATCCCAGTA CCAAGATTCC AAGATTTGAA GTATTTTGAA ACG-AGACCC 146220 |||||||||| |||||||| || | ||||| |||| || || || | ||||| ||| |||||| TCAGAGAAGT AGTCCCAGTA CCCATATTCC AAGAGTTCAA GTGTGTTGAA ACGAAGACCC 392 TCGATGAACC GTTGTGCTTA TGACGGTCCG TCACACTTGC CGTCGAGGGA AATGAAGAAA 146160 ||||| ||| ||||||| || |||||||||| ||| || ||| ||||||||| |||||||| | TCGATAGACC GTTGTGCCTA TGACGGTCCG TCATACCTGC CGTCGAGGGT AATGAAGAGA 452 GCAGCAGAAG -AATTGCACC AAGTATGGGA CGACGGAGTC CACGACGGTC CGTCATGACC 146101 | |||| ||| ||||||| |||||||||| |||| ||||| || ||||||| | || ||||| GAAGCAAAAG AAATTGCA-T AAGTATGGGA CGACAGAGTC CATGACGGTC CATCGTGACC 511 ACGACGGTCC ATCGCGTAGT CCGTCGACCC AGCCGCGTTT TGGCAGATTT CCAGTAATTA 146041 | |||| ||| ||| | | | |||||||| |||||||||| |||||||||| |||| || || ATGACGATCC GTCGTGAGTT CTGTCGACCC AGCCGCGTTT TGGCAGATTT CCAGCAAATA 571 GAATCCTTGT T 146030 || ||||||| | GAGTCCTTGT T 582 hqPGS_C04HBa0031H05.1-_SGN-E322644+ (146498 146030) ******************************************************************************** EST sequence 74 +strand 680 n (File: SGN-E346859+) 1 TTGATATGCC TTGGTATAAA AGAAGGCTTG ATCGATTGAC AGAATAAGAT TAGTGGAGCG 61 GGTGTCATGA ACCGACACGT AGAATTAGGG GATCGGGTAT CACGAACTGA CACGTAGAAC 121 TAGGGGATTG ATATACCGTG GTTTCACGGT ATAATTAATA CTTTTTCCTT AAGTTTAGTG 181 TGTCCGAAAG CCCTTTTTGT GCTAATTTTG ATATAAGTTT TTCTTTGTTT TGCAGGAAAT 241 CTGTCTAAAG CTGAATGCGG AGATTTTGAG CGATAAATGC AGAAGAGACC ACCTACGGAG 301 CTTATGACGG TCCGTCGTGC TTGTGACGGT CCGTAGGTGG CAGCGTAGAG AAGCTGCTGA 361 AGGAAGATGG GGAAGTCTGA CCAAGTGTGG GATTACGAAG CTTGTGACGG TCCGTCATGG 421 ATATGACGGT CCGTCCTGCA GGTTCGTCGC GAAGATCAGA GAAGTGATCC CAGTACCCAA 481 ATTCCAAAAG TTGAAGTATT TTGTAACGAA GACCCTCGAC GGACCGTCGT GCCTGTGACG 541 GTCCGTCACA CTTGCCGTCG AGGGGAATGA AGAAAGCAGC AGAAGAATTG CACCCAAGTA 601 TGGGGCGACG GAGCCCATGA CGGTCCGTCA TGACCACGAC GTTCTGTCGC GTGGTCCGTC 661 GACCCAGCCG CGTTTTGGCA Predicted gene structure (within gDNA segment 149067 to 145446): Exon 1 147991 147976 ( 16 n); cDNA 111 126 ( 16 n); score: 0.750 Intron 1 147975 146608 (1368 n); Pd: 0.436 (s: 0), Pa: 0.000 (s: 1.00) Exon 2 146607 146059 ( 549 n); cDNA 127 677 ( 551 n); score: 0.934 MATCH C04HBa0031H05.1- SGN-E346859+ 0.934 565 0.831 C PGS_C04HBa0031H05.1-_SGN-E346859+ (147991 147976,146607 146059) Alignment (genomic DNA sequence = upper lines): CACATACAAC TATTGGGCAA TCCTTGTATA CTCTATCCGT TCTTACATTT TCTCTTAAAG 147932 ||| || ||| || || CACGTAGAAC TAGGGG.... .......... .......... .......... .......... 126 GTGTACTAAC CATTTTAGGA TCATGAAGAA CGTCAGGAAA TATCTAAAAG TGAGAGCAAT 147872 .......... .......... .......... .......... .......... .......... 126 CAAAGGAATT ACAAAGGAAA GCGTAGACCC TTAGATGAAC TTGACTCCCC TTGGTGTAAG 147812 .......... .......... .......... .......... .......... .......... 126 ATTCCCTTCT TAAACCTAGG CTTATCCTTG ATTTCAGTAC TACTCTTCCT TAAGAAATTC 147752 .......... .......... .......... .......... .......... .......... 126 TTATGAGCTT GCCTTGACTT GTTCCTTCCT TAGTATGCTT CCTCTTCCTG CCTTCCTCCA 147692 .......... .......... .......... .......... .......... .......... 126 CTTGTTGGAC ACGGACCATA AGCATGGAAA GTCCCATGCT GGCATGCAAC ATAGCTATCC 147632 .......... .......... .......... .......... .......... .......... 126 TGCACTTCTC CTCGAGATTC TCAGCAATCT GAGATCCTGT GTAAATGGGA GAATTTAGCC 147572 .......... .......... .......... .......... .......... .......... 126 TCGTGAAGTC CCTTAACCTG TTAGTCATGG TACTAGAATG TGGGTTCTTC TTGGGAATAC 147512 .......... .......... .......... .......... .......... .......... 126 CTTGTTGCTT TTCCTTGGCT ATCACAGCCT GAGCTTTTAA GGTGATAGCT TGGTCCATCT 147452 .......... .......... .......... .......... .......... .......... 126 GTACCAGGGA TATCCTTAAT TCTCCATCTG TCAACCCAGC TGGGTTACAA GCATCTCCAT 147392 .......... .......... .......... .......... .......... .......... 126 TTCACCAGTT GGGGCCTGGG GAGGAATTTG GTTGCCCTAG CAACTGCTTC TCCTCGTCCC 147332 .......... .......... .......... .......... .......... .......... 126 TGACCACTGT TCCTCTTTGT GTTCATTTTT TTTGAAAAAG TAGAATTGAT GTTCGATAAG 147272 .......... .......... .......... .......... .......... .......... 126 CTCATAACAC CAAGGAATCA GACATTAGAG AAGGCACGAT AAGATAGAAG AAGGGAATTT 147212 .......... .......... .......... .......... .......... .......... 126 TCCTACGCAT CATGCAGTCT CTAATTTAGG ATAGTGGTGC ACTTCACTAC CATGACTTAG 147152 .......... .......... .......... .......... .......... .......... 126 AAACTACTCA ATGTGGTTGA TGTGAACTTA TTATACTCGG AATTTAACCT AATTCTTTGA 147092 .......... .......... .......... .......... .......... .......... 126 TACCAACTTG GTCATGACCG GAATCTAGAC CCCAGACGAT ATCAGCGTCG TTGACCTCTC 147032 .......... .......... .......... .......... .......... .......... 126 TGAGGTCGCA GACAAGCCTA CTTACGTCAT TCTTACTTCA TCTGGATTAA TTATAGCAGA 146972 .......... .......... .......... .......... .......... .......... 126 AAATTTGAAA CTTTTTGTTT CTTAACATAC TAATAATTCT ATTAAATTCA TAATTTTTCA 146912 .......... .......... .......... .......... .......... .......... 126 TCCTCAACCA TCTAACATTA ATATAATCAA ATGAAAGAAA TAGTTTAATA TAGCATTAAA 146852 .......... .......... .......... .......... .......... .......... 126 TGTATACTTG CCAAAATGGC ACGATACGAT GTCTGAAGAA AAATAGAAAG AAACACTAGT 146792 .......... .......... .......... .......... .......... .......... 126 GGAACATGCT CCACTAACTA TAGCCTACAT CTAAGCTAGA TAAAAATGGT ATACATCATC 146732 .......... .......... .......... .......... .......... .......... 126 GAATGCATGA GAGCCTACGA AGTCGGGATG AAAGCTCCAC GTCCAGATAA CTGCAACGCC 146672 .......... .......... .......... .......... .......... .......... 126 AACCTGTAAG CTCTAGCGTC CACCTGTGCC TGCACCTAAA ATTGTAGAAT TGTATGGGAT 146612 .......... .......... .......... .......... .......... .......... 126 TAGTATTGAT ATACCGTGGT TTCACGGTAT AATTAATACT TTTTCCTTAA GTTTAGTGTG 146552 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....ATTGAT ATACCGTGGT TTCACGGTAT AATTAATACT TTTTCCTTAA GTTTAGTGTG 182 TCCGAAAGCC CTTTTTGTGC TAATTTTGAT ATAAGTTTCT CTTTGTTTTG CAGGAAATCT 146492 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TCCGAAAGCC CTTTTTGTGC TAATTTTGAT ATAAGTTTTT CTTTGTTTTG CAGGAAATCT 242 GTCCAAAGCT GAATGCGGAG ATTTTAAGCG AAAAATGCAG AAGAGGCCAC CTACGGAGCT 146432 ||| |||||| |||||||||| ||||| |||| | |||||||| ||||| |||| |||||||||| GTCTAAAGCT GAATGCGGAG ATTTTGAGCG ATAAATGCAG AAGAGACCAC CTACGGAGCT 302 TATGACGGTC CGTCGTGCCT GTGACAGTCC GTAGGTGGCA GCGTAGAGAA GCTGCTGAAG 146372 |||||||||| |||||||| | ||||| |||| |||||||||| |||||||||| |||||||||| TATGACGGTC CGTCGTGCTT GTGACGGTCC GTAGGTGGCA GCGTAGAGAA GCTGCTGAAG 362 GAAGATAGGG AAGTCTGACC AAGTGTGGGA TTACGAAGCT TGTGACGGTC AGTCATGGCT 146312 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | GAAGATGGGG AAGTCTGACC AAGTGTGGGA TTACGAAGCT TGTGACGGTC CGTCATGGAT 422 ATGACGGTCC GTCCTGCAGG TACATCGTGA AGATCAGAGA AGTGATCCCA GTACCAAGAT 146252 |||||||||| |||||||||| | | ||| || |||||||||| |||||||||| ||||| | || ATGACGGTCC GTCCTGCAGG TTCGTCGCGA AGATCAGAGA AGTGATCCCA GTACCCAAAT 482 TCCAAGATTT GAAGTATTTT GAAACG-AGA CCCTCGATGA ACCGTTGTGC TTATGACGGT 146193 ||||| | || |||||||||| | |||| ||| ||||||| | ||||| |||| | ||||||| TCCAAAAGTT GAAGTATTTT GTAACGAAGA CCCTCGACGG ACCGTCGTGC CTGTGACGGT 542 CCGTCACACT TGCCGTCGAG GGAAATGAAG AAAGCAGCAG AAGAATTGCA -CCAAGTATG 146134 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| ||||||||| CCGTCACACT TGCCGTCGAG GGGAATGAAG AAAGCAGCAG AAGAATTGCA CCCAAGTATG 602 GGACGACGGA GTCCACGACG GTCCGTCATG ACCACGACGG TCCATCGCGT AGTCCGTCGA 146074 || ||||||| | ||| |||| |||||||||| ||||||||| || |||||| ||||||||| GGGCGACGGA GCCCATGACG GTCCGTCATG ACCACGACGT TCTGTCGCGT GGTCCGTCGA 662 CCCAGCCGCG TTTTG 146059 |||||||||| ||||| CCCAGCCGCG TTTTG 677 hqPGS_C04HBa0031H05.1-_SGN-E346859+ (146607 146059) ******************************************************************************** EST sequence 36 -strand 534 n (File: SGN-E286708-) 1 TGGTGGCCAA GTGATATACC GTGGTTTCAT GGTATTATTA ATACTTTTTC CTTAAGTTTA 61 GTGTGTCTAA AATCCTTTTT GTGCTAATTT CTATATTAGT TTCTTTTTAT TTTGCAGGAA 121 ATCTGTCCAA AGCTGAATGC GGAGATTTTG AGCGAAGAAA TGCAGAAGAG ACCACCTACG 181 GAGCTTATGA CGGTCCGTCG TGCTTGTGAC GGTCCGTAGG TGTCAGCGTA GTGCAGCTGC 241 TGAAGGAAGA TGGGGAAGTC TGACCAAGTA TGGGGTTACG AAGCTTGTGA CGGTCCATCG 301 TGTCTATGAC GGTCCGTCCT ACAGGTTCGT CATGAAGTTC AGAGAAGTAA TCCCAGTACC 361 CATATTCCAA GAGTTAAAGT GTTTTGGAAC GAAGGCCCTC GACGGACCGT TGTGCCTATG 421 ACGGTCCGCC ATACTTGCCG TTGAGGGTAA TGAAGAAGAG CAACAAAAGA AATTGCATAA 481 GTATGGGACG ACGGAGTCCA TGACGGTCCG TCGTGACCAT GACGGACCTC GCGA Predicted gene structure (within gDNA segment 147325 to 143557): Exon 1 146615 146085 ( 531 n); cDNA 2 533 ( 532 n); score: 0.866 MATCH C04HBa0031H05.1- SGN-E286708- 0.866 531 0.994 C PGS_C04HBa0031H05.1-_SGN-E286708- (146615 146085) Alignment (genomic DNA sequence = upper lines): GGATTAGTAT TGATATACCG TGGTTTCACG GTATAATTAA TACTTTTTCC TTAAGTTTAG 146556 || | |||||||||| |||||||| | |||| ||||| |||||||||| |||||||||| GGTGGCCAAG TGATATACCG TGGTTTCATG GTATTATTAA TACTTTTTCC TTAAGTTTAG 61 TGTGTCCGAA AGCCCTTTTT GTGCTAATTT TGATATAAGT TTCTCTTTGT TTTGCAGGAA 146496 ||||| | || | ||||||| |||||||||| |||| ||| |||| ||| | |||||||||| TGTGT-CTAA AATCCTTTTT GTGCTAATTT CTATATTAGT TTCTTTTTAT TTTGCAGGAA 120 ATCTGTCCAA AGCTGAATGC GGAGATTTTA AGCGAA-AAA TGCAGAAGAG GCCACCTACG 146437 |||||||||| |||||||||| ||||||||| |||||| ||| |||||||||| ||||||||| ATCTGTCCAA AGCTGAATGC GGAGATTTTG AGCGAAGAAA TGCAGAAGAG ACCACCTACG 180 GAGCTTATGA CGGTCCGTCG TGCCTGTGAC AGTCCGTAGG TGGCAGCGTA GAGAAGCTGC 146377 |||||||||| |||||||||| ||| |||||| ||||||||| || ||||||| | | |||||| GAGCTTATGA CGGTCCGTCG TGCTTGTGAC GGTCCGTAGG TGTCAGCGTA GTGCAGCTGC 240 TGAAGGAAGA TAGGGAAGTC TGACCAAGTG TGGGATTACG AAGCTTGTGA CGGTCAGTCA 146317 |||||||||| | |||||||| ||||||||| |||| ||||| |||||||||| ||||| || TGAAGGAAGA TGGGGAAGTC TGACCAAGTA TGGGGTTACG AAGCTTGTGA CGGTCCATCG 300 TGGCTATGAC GGTCCGTCCT GCAGGTACAT CGTGAAGATC AGAGAAGTGA TCCCAGTACC 146257 || ||||||| |||||||||| ||||| | | | ||||| || |||||||| | |||||||||| TGTCTATGAC GGTCCGTCCT ACAGGTTCGT CATGAAGTTC AGAGAAGTAA TCCCAGTACC 360 AAGATTCCAA GATTTGAAGT ATTTTGAAAC G-AGACCCTC GATGAACCGT TGTGCTTATG 146198 | ||||||| || || |||| ||||| ||| | || ||||| || | ||||| ||||| |||| CATATTCCAA GAGTTAAAGT GTTTTGGAAC GAAGGCCCTC GACGGACCGT TGTGCCTATG 420 ACGGTCCGTC ACACTTGCCG TCGAGGGAAA TGAAGAA-AG CAGCAGAAG- AATTGCACCA 146140 |||||||| | | |||||||| | ||||| || ||||||| || || || ||| ||||||| | ACGGTCCGCC ATACTTGCCG TTGAGGGTAA TGAAGAAGAG CAACAAAAGA AATTGCA-TA 479 AGTATGGGAC GACGGAGTCC ACGACGGTCC GTCATGACCA CGACGGTCCA TCGCG 146085 |||||||||| |||||||||| | |||||||| ||| |||||| ||||| || ||||| AGTATGGGAC GACGGAGTCC ATGACGGTCC GTCGTGACCA TGACGGACC- TCGCG 533 hqPGS_C04HBa0031H05.1-_SGN-E286708- (146615 146085) ******************************************************************************** EST sequence 27 -strand 800 n (File: SGN-E540293-) 1 AGTAGCCTAA ACTAAGTCTA TGTGAGAGGT CTAGAGCCAA GGAAGAGGGC TAGGGCAGCC 61 AAATTTTCCC CAGACATTTC CCACCTTCTC ACGACCACCG TAATGGACAA TGCTGAGGAC 121 CACAGATCGT GGTGGGCTAG GCTGTGGCTA GGTGAAATCT GCCCAAAATA GCCCCCTCCA 181 CACAAGCTAT TTCACGGCTC GTGAAAGCTA TTATTGGCCG TGGAAAGGCT CGTGGTGGGG 241 ACTTAGTTTT GAGGGGTTAA GGAAGTGGTG GCCAAGTGAT ATACCGTGGT TTCATGGTAT 301 TATTAATACT TTTTCCTTAA GTTTAGTGTG TCTAAAATCC TTTTTGTGCT AATTTCTATA 361 TTAGTTTCTT TTTATTTTGC AGGAAATCTG TCCAAAGCTG AATGCGGAGA TTTTGAGCGA 421 AGAAATGCAG AAGAGACCAC CTACGGAGCT TATGACGGTC CGTCGTGCTT GTGACGGTCC 481 GTAGGTGTCA GCGTAGTGCA GCTGCTGAAG GAAGATGGGG AAGTCTGACC AAGTATGGGG 541 TTACGAAGCT TGTGACGGTC CATCGTGTCT ATGACGGTCC GTCCTACAGG TTCGTCATGA 601 AGTTCAGAGA AGTAATCCCA GTACCCATAT TCCAAGAGTT AAAGTGTTTT GGAACGAAGG 661 CCCTCGACGG ACCGTTGTGC CTATGACGGT CCGCCATACT TGCCGTTGAG GGTAATGAAG 721 AAGAGCAACA AAAGAAATTG CATAAGTATG GGACGACGGA GTCCATGACG GTCCGTCGTG 781 ACCATGACGG ACCTCGCGAC Predicted gene structure (within gDNA segment 149975 to 143547): Exon 1 146605 146085 ( 521 n); cDNA 277 798 ( 522 n); score: 0.877 MATCH C04HBa0031H05.1- SGN-E540293- 0.877 521 0.651 C PGS_C04HBa0031H05.1-_SGN-E540293- (146605 146085) Alignment (genomic DNA sequence = upper lines): TGATATACCG TGGTTTCACG GTATAATTAA TACTTTTTCC TTAAGTTTAG TGTGTCCGAA 146546 |||||||||| |||||||| | |||| ||||| |||||||||| |||||||||| ||||| | || TGATATACCG TGGTTTCATG GTATTATTAA TACTTTTTCC TTAAGTTTAG TGTGT-CTAA 335 AGCCCTTTTT GTGCTAATTT TGATATAAGT TTCTCTTTGT TTTGCAGGAA ATCTGTCCAA 146486 | ||||||| |||||||||| |||| ||| |||| ||| | |||||||||| |||||||||| AATCCTTTTT GTGCTAATTT CTATATTAGT TTCTTTTTAT TTTGCAGGAA ATCTGTCCAA 395 AGCTGAATGC GGAGATTTTA AGCGAA-AAA TGCAGAAGAG GCCACCTACG GAGCTTATGA 146427 |||||||||| ||||||||| |||||| ||| |||||||||| ||||||||| |||||||||| AGCTGAATGC GGAGATTTTG AGCGAAGAAA TGCAGAAGAG ACCACCTACG GAGCTTATGA 455 CGGTCCGTCG TGCCTGTGAC AGTCCGTAGG TGGCAGCGTA GAGAAGCTGC TGAAGGAAGA 146367 |||||||||| ||| |||||| ||||||||| || ||||||| | | |||||| |||||||||| CGGTCCGTCG TGCTTGTGAC GGTCCGTAGG TGTCAGCGTA GTGCAGCTGC TGAAGGAAGA 515 TAGGGAAGTC TGACCAAGTG TGGGATTACG AAGCTTGTGA CGGTCAGTCA TGGCTATGAC 146307 | |||||||| ||||||||| |||| ||||| |||||||||| ||||| || || ||||||| TGGGGAAGTC TGACCAAGTA TGGGGTTACG AAGCTTGTGA CGGTCCATCG TGTCTATGAC 575 GGTCCGTCCT GCAGGTACAT CGTGAAGATC AGAGAAGTGA TCCCAGTACC AAGATTCCAA 146247 |||||||||| ||||| | | | ||||| || |||||||| | |||||||||| | ||||||| GGTCCGTCCT ACAGGTTCGT CATGAAGTTC AGAGAAGTAA TCCCAGTACC CATATTCCAA 635 GATTTGAAGT ATTTTGAAAC G-AGACCCTC GATGAACCGT TGTGCTTATG ACGGTCCGTC 146188 || || |||| ||||| ||| | || ||||| || | ||||| ||||| |||| |||||||| | GAGTTAAAGT GTTTTGGAAC GAAGGCCCTC GACGGACCGT TGTGCCTATG ACGGTCCGCC 695 ACACTTGCCG TCGAGGGAAA TGAAGAA-AG CAGCAGAAG- AATTGCACCA AGTATGGGAC 146130 | |||||||| | ||||| || ||||||| || || || ||| ||||||| | |||||||||| ATACTTGCCG TTGAGGGTAA TGAAGAAGAG CAACAAAAGA AATTGCA-TA AGTATGGGAC 754 GACGGAGTCC ACGACGGTCC GTCATGACCA CGACGGTCCA TCGCG 146085 |||||||||| | |||||||| ||| |||||| ||||| || ||||| GACGGAGTCC ATGACGGTCC GTCGTGACCA TGACGGACC- TCGCG 798 hqPGS_C04HBa0031H05.1-_SGN-E540293- (146605 146085) ******************************************************************************** EST sequence 92 +strand 498 n (File: SGN-E258752+) 1 TATGGACGTA TGGTGCAAGG TTTATCTCAC GAAAAAGATA TACTGGTGGT CATGTTCTCA 61 ATGTTTTCGA CGCCAAGCAT CTCCATTCAG TAGTAAGCGA TTTACTTTTT AAGGAAATCT 121 GTCCAAAGAT GAATGCGGAG ATTTTGAGTG AAGAAATGCA GAATAGACGA CCTACAGAGC 181 TTATGACGGT CCGTCGTGCT TGTGACGGTC TGTAGGTGGC AGCGTAGTGC AGCTGCTGAA 241 AGAAGATGGG GAAGTCTGAC CAAGTGCGGG GCTACGGAGT TCATGACGGT CCGTCCTGCA 301 GGTTCGTCAT GAAGTTCAGA GAAGTAGTCC CAGTACCCAT ATTCCAAGAG TTCAAGTGTG 361 TTGAAACGAA GACCCTCGAT AGACCGTTGT GCCTATGACG GTCCGTCATA CCTGCCGTCG 421 AGGGTAATGA AGAGAGAAGC AAAAGAAATT GCATAAGTAT GGGACGACAG AGTCCATGAC 481 GGTCCATCGT GACCATGA Predicted gene structure (within gDNA segment 148210 to 143066): Exon 1 147477 147471 ( 7 n); cDNA 107 113 ( 7 n); score: 1.000 Intron 1 147470 146499 ( 972 n); Pd: 0.593 (s: 0), Pa: 0.998 (s: 0.89) Exon 2 146498 146097 ( 402 n); cDNA 114 498 ( 385 n); score: 0.827 MATCH C04HBa0031H05.1- SGN-E258752+ 0.827 409 0.821 C PGS_C04HBa0031H05.1-_SGN-E258752+ (147477 147471,146498 146097) Alignment (genomic DNA sequence = upper lines): TTTTAAGGTG ATAGCTTGGT CCATCTGTAC CAGGGATATC CTTAATTCTC CATCTGTCAA 147418 ||||||| TTTTAAG... .......... .......... .......... .......... .......... 113 CCCAGCTGGG TTACAAGCAT CTCCATTTCA CCAGTTGGGG CCTGGGGAGG AATTTGGTTG 147358 .......... .......... .......... .......... .......... .......... 113 CCCTAGCAAC TGCTTCTCCT CGTCCCTGAC CACTGTTCCT CTTTGTGTTC ATTTTTTTTG 147298 .......... .......... .......... .......... .......... .......... 113 AAAAAGTAGA ATTGATGTTC GATAAGCTCA TAACACCAAG GAATCAGACA TTAGAGAAGG 147238 .......... .......... .......... .......... .......... .......... 113 CACGATAAGA TAGAAGAAGG GAATTTTCCT ACGCATCATG CAGTCTCTAA TTTAGGATAG 147178 .......... .......... .......... .......... .......... .......... 113 TGGTGCACTT CACTACCATG ACTTAGAAAC TACTCAATGT GGTTGATGTG AACTTATTAT 147118 .......... .......... .......... .......... .......... .......... 113 ACTCGGAATT TAACCTAATT CTTTGATACC AACTTGGTCA TGACCGGAAT CTAGACCCCA 147058 .......... .......... .......... .......... .......... .......... 113 GACGATATCA GCGTCGTTGA CCTCTCTGAG GTCGCAGACA AGCCTACTTA CGTCATTCTT 146998 .......... .......... .......... .......... .......... .......... 113 ACTTCATCTG GATTAATTAT AGCAGAAAAT TTGAAACTTT TTGTTTCTTA ACATACTAAT 146938 .......... .......... .......... .......... .......... .......... 113 AATTCTATTA AATTCATAAT TTTTCATCCT CAACCATCTA ACATTAATAT AATCAAATGA 146878 .......... .......... .......... .......... .......... .......... 113 AAGAAATAGT TTAATATAGC ATTAAATGTA TACTTGCCAA AATGGCACGA TACGATGTCT 146818 .......... .......... .......... .......... .......... .......... 113 GAAGAAAAAT AGAAAGAAAC ACTAGTGGAA CATGCTCCAC TAACTATAGC CTACATCTAA 146758 .......... .......... .......... .......... .......... .......... 113 GCTAGATAAA AATGGTATAC ATCATCGAAT GCATGAGAGC CTACGAAGTC GGGATGAAAG 146698 .......... .......... .......... .......... .......... .......... 113 CTCCACGTCC AGATAACTGC AACGCCAACC TGTAAGCTCT AGCGTCCACC TGTGCCTGCA 146638 .......... .......... .......... .......... .......... .......... 113 CCTAAAATTG TAGAATTGTA TGGGATTAGT ATTGATATAC CGTGGTTTCA CGGTATAATT 146578 .......... .......... .......... .......... .......... .......... 113 AATACTTTTT CCTTAAGTTT AGTGTGTCCG AAAGCCCTTT TTGTGCTAAT TTTGATATAA 146518 .......... .......... .......... .......... .......... .......... 113 GTTTCTCTTT GTTTTGCAGG AAATCTGTCC AAAGCTGAAT GCGGAGATTT TAAGCGAA-A 146459 | |||||||||| |||| ||||| |||||||||| | || ||| | .......... .........G AAATCTGTCC AAAGATGAAT GCGGAGATTT TGAGTGAAGA 154 AATGCAGAAG AGGCCACCTA CGGAGCTTAT GACGGTCCGT CGTGCCTGTG ACAGTCCGTA 146399 ||||||||| || | ||||| | |||||||| |||||||||| ||||| |||| || ||| ||| AATGCAGAAT AGACGACCTA CAGAGCTTAT GACGGTCCGT CGTGCTTGTG ACGGTCTGTA 214 GGTGGCAGCG TAGAGAAGCT GCTGAAGGAA GATAGGGAAG TCTGACCAAG TGTGGGATTA 146339 |||||||||| ||| | |||| |||||| ||| ||| |||||| |||||||||| || || GGTGGCAGCG TAGTGCAGCT GCTGAAAGAA GATGGGGAAG TCTGACCAAG TG-CGG---- 269 CGAAGCTTGT GACGGTCAGT CATGGCTATG ACGGTCCGTC CTGCAGGTAC ATCGTGAAGA 146279 | || | |||| ||| | | ||| |||||||||| |||||||| | || ||||| -G--GC---T -ACGG--AGT --T--C-ATG ACGGTCCGTC CTGCAGGTTC GTCATGAAGT 315 TCAGAGAAGT GATCCCAGTA CCAAGATTCC AAGATTTGAA GTATTTTGAA ACG-AGACCC 146220 |||||||||| |||||||| || | ||||| |||| || || || | ||||| ||| |||||| TCAGAGAAGT AGTCCCAGTA CCCATATTCC AAGAGTTCAA GTGTGTTGAA ACGAAGACCC 375 TCGATGAACC GTTGTGCTTA TGACGGTCCG TCACACTTGC CGTCGAGGGA AATGAAGAAA 146160 ||||| ||| ||||||| || |||||||||| ||| || ||| ||||||||| |||||||| | TCGATAGACC GTTGTGCCTA TGACGGTCCG TCATACCTGC CGTCGAGGGT AATGAAGAGA 435 GCAGCAGAAG -AATTGCACC AAGTATGGGA CGACGGAGTC CACGACGGTC CGTCATGACC 146101 | |||| ||| ||||||| |||||||||| |||| ||||| || ||||||| | || ||||| GAAGCAAAAG AAATTGCA-T AAGTATGGGA CGACAGAGTC CATGACGGTC CATCGTGACC 494 ACGA 146097 | || ATGA 498 hqPGS_C04HBa0031H05.1-_SGN-E258752+ (146498 146097) ******************************************************************************** EST sequence 41 -strand 522 n (File: SGN-E243969-) 1 GGTATAATTA ATACTTTTGC CTTAAGTTTA AAGTGTCCGA AAGCCTTTTT TGTGCTAATT 61 TTGATATAAG TTTCTCTTTG TTTTGCAGGA AATCTGTCAA AAGCTGAAAG CGGAGATTTT 121 GAGCAAAAAA ATGCAGAAGA GACCACCTAC GGAGCTTTTG AAGGTCTGTC GTGCTTGTGA 181 CGGTCCGTAG GTGGTAGCGT AGAGAAGCTG CTGAAGGAAG ATGGGGAAGT CTGACCAAGT 241 GTGGGATTAC GAAGCTTGTG ACGGTCCGTC ATGGCTATGA CGGTCCGTCC TGCAGGTTCG 301 TCGTGAAGAT CAGAGAAGTG ATCCCAGTAC CCAGATTCCA AGAGTTGAAG TATTTTGAAA 361 CGAAGACCCT CGACAGACCG TTGTACCTAT GACGGTCCGT TACACTTGCC GTCGAGGGGA 421 ATGAAGAAAG CAGCAGAAGA AATTGCACCA AGTATGGGAC GACAGAGTCC ACGACGGTCC 481 GTCGCGTGGT CCGTCGACCA AGCCGCGTTT TGGCAGATTT CC Predicted gene structure (within gDNA segment 147610 to 145117): Exon 1 146586 146107 ( 480 n); cDNA 1 483 ( 483 n); score: 0.924 MATCH C04HBa0031H05.1- SGN-E243969- 0.924 480 0.920 C PGS_C04HBa0031H05.1-_SGN-E243969- (146586 146107) Alignment (genomic DNA sequence = upper lines): GGTATAATTA ATACTTTTTC CTTAAGTTTA GTGTGTCCGA AAGCCCTTTT TGTGCTAATT 146527 |||||||||| |||||||| | |||||||||| |||||||| ||||| |||| |||||||||| GGTATAATTA ATACTTTTGC CTTAAGTTTA AAGTGTCCGA AAGCCTTTTT TGTGCTAATT 60 TTGATATAAG TTTCTCTTTG TTTTGCAGGA AATCTGTCCA AAGCTGAATG CGGAGATTTT 146467 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||||||||| TTGATATAAG TTTCTCTTTG TTTTGCAGGA AATCTGTCAA AAGCTGAAAG CGGAGATTTT 120 AAGC-GAAAA ATGCAGAAGA GGCCACCTAC GGAGCTTATG ACGGTCCGTC GTGCCTGTGA 146408 ||| |||| |||||||||| | |||||||| ||||||| || | |||| ||| |||| ||||| GAGCAAAAAA ATGCAGAAGA GACCACCTAC GGAGCTTTTG AAGGTCTGTC GTGCTTGTGA 180 CAGTCCGTAG GTGGCAGCGT AGAGAAGCTG CTGAAGGAAG ATAGGGAAGT CTGACCAAGT 146348 | |||||||| |||| ||||| |||||||||| |||||||||| || ||||||| |||||||||| CGGTCCGTAG GTGGTAGCGT AGAGAAGCTG CTGAAGGAAG ATGGGGAAGT CTGACCAAGT 240 GTGGGATTAC GAAGCTTGTG ACGGTCAGTC ATGGCTATGA CGGTCCGTCC TGCAGGTACA 146288 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| ||||||| | GTGGGATTAC GAAGCTTGTG ACGGTCCGTC ATGGCTATGA CGGTCCGTCC TGCAGGTTCG 300 TCGTGAAGAT CAGAGAAGTG ATCCCAGTAC CAAGATTCCA AGATTTGAAG TATTTTGAAA 146228 |||||||||| |||||||||| |||||||||| | |||||||| ||| |||||| |||||||||| TCGTGAAGAT CAGAGAAGTG ATCCCAGTAC CCAGATTCCA AGAGTTGAAG TATTTTGAAA 360 CG-AGACCCT CGATGAACCG TTGTGCTTAT GACGGTCCGT CACACTTGCC GTCGAGGGAA 146169 || ||||||| ||| |||| |||| | ||| |||||||||| ||||||||| |||||||| | CGAAGACCCT CGACAGACCG TTGTACCTAT GACGGTCCGT TACACTTGCC GTCGAGGGGA 420 ATGAAGAAAG CAGCAGAAG- AATTGCACCA AGTATGGGAC GACGGAGTCC ACGACGGTCC 146110 |||||||||| ||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ATGAAGAAAG CAGCAGAAGA AATTGCACCA AGTATGGGAC GACAGAGTCC ACGACGGTCC 480 GTC 146107 ||| GTC 483 hqPGS_C04HBa0031H05.1-_SGN-E243969- (146586 146107) ******************************************************************************** EST sequence 77 +strand 464 n (File: SGN-E255290+) 1 TATGGACGTA TGGTGCAAGG TTTATCTCAC GAAAAAGATA TACTGGTGGT CATGTTCTCA 61 ATGTTTTCGA CGCCAAGCAT CTCCATTCAG TAGTAAGCGA TTTACTTTTT AAGGAAATCT 121 GTCCAAAGAT GAATGCGGAG ATTTTGAGTG AAGAAATGCA GAATAGACGA CCTACAGAGC 181 TTATGACGGT CCGTCGTGCT TGTGACGGTC TGTAGGTGGC AGCGTAGTGC AGCTGCTGAA 241 AGAAGATGGG GAAGTCTGAC CAAGTGCGGG GCTACGGAGT TCATGACGGT CCGTCCTGCA 301 GGTTCGTCAT GAAGTTCAGA GAAGTAGTCC CAGTACCCAT ATTCCAAGAG TTCAAGTGTG 361 TTGAAACGAA GACCCTCGAT AGACCGTTGT GCCTATGACG GTCCGTCATA CCTGCCGTCG 421 AGGGTAATGA AGAGAGAAGC AAAAGAAATT GCATAAGTAT GGGA Predicted gene structure (within gDNA segment 148210 to 143406): Exon 1 147477 147471 ( 7 n); cDNA 107 113 ( 7 n); score: 1.000 Intron 1 147470 146499 ( 972 n); Pd: 0.593 (s: 0), Pa: 0.998 (s: 0.89) Exon 2 146498 146131 ( 368 n); cDNA 114 464 ( 351 n); score: 0.825 MATCH C04HBa0031H05.1- SGN-E255290+ 0.825 375 0.808 C PGS_C04HBa0031H05.1-_SGN-E255290+ (147477 147471,146498 146131) Alignment (genomic DNA sequence = upper lines): TTTTAAGGTG ATAGCTTGGT CCATCTGTAC CAGGGATATC CTTAATTCTC CATCTGTCAA 147418 ||||||| TTTTAAG... .......... .......... .......... .......... .......... 113 CCCAGCTGGG TTACAAGCAT CTCCATTTCA CCAGTTGGGG CCTGGGGAGG AATTTGGTTG 147358 .......... .......... .......... .......... .......... .......... 113 CCCTAGCAAC TGCTTCTCCT CGTCCCTGAC CACTGTTCCT CTTTGTGTTC ATTTTTTTTG 147298 .......... .......... .......... .......... .......... .......... 113 AAAAAGTAGA ATTGATGTTC GATAAGCTCA TAACACCAAG GAATCAGACA TTAGAGAAGG 147238 .......... .......... .......... .......... .......... .......... 113 CACGATAAGA TAGAAGAAGG GAATTTTCCT ACGCATCATG CAGTCTCTAA TTTAGGATAG 147178 .......... .......... .......... .......... .......... .......... 113 TGGTGCACTT CACTACCATG ACTTAGAAAC TACTCAATGT GGTTGATGTG AACTTATTAT 147118 .......... .......... .......... .......... .......... .......... 113 ACTCGGAATT TAACCTAATT CTTTGATACC AACTTGGTCA TGACCGGAAT CTAGACCCCA 147058 .......... .......... .......... .......... .......... .......... 113 GACGATATCA GCGTCGTTGA CCTCTCTGAG GTCGCAGACA AGCCTACTTA CGTCATTCTT 146998 .......... .......... .......... .......... .......... .......... 113 ACTTCATCTG GATTAATTAT AGCAGAAAAT TTGAAACTTT TTGTTTCTTA ACATACTAAT 146938 .......... .......... .......... .......... .......... .......... 113 AATTCTATTA AATTCATAAT TTTTCATCCT CAACCATCTA ACATTAATAT AATCAAATGA 146878 .......... .......... .......... .......... .......... .......... 113 AAGAAATAGT TTAATATAGC ATTAAATGTA TACTTGCCAA AATGGCACGA TACGATGTCT 146818 .......... .......... .......... .......... .......... .......... 113 GAAGAAAAAT AGAAAGAAAC ACTAGTGGAA CATGCTCCAC TAACTATAGC CTACATCTAA 146758 .......... .......... .......... .......... .......... .......... 113 GCTAGATAAA AATGGTATAC ATCATCGAAT GCATGAGAGC CTACGAAGTC GGGATGAAAG 146698 .......... .......... .......... .......... .......... .......... 113 CTCCACGTCC AGATAACTGC AACGCCAACC TGTAAGCTCT AGCGTCCACC TGTGCCTGCA 146638 .......... .......... .......... .......... .......... .......... 113 CCTAAAATTG TAGAATTGTA TGGGATTAGT ATTGATATAC CGTGGTTTCA CGGTATAATT 146578 .......... .......... .......... .......... .......... .......... 113 AATACTTTTT CCTTAAGTTT AGTGTGTCCG AAAGCCCTTT TTGTGCTAAT TTTGATATAA 146518 .......... .......... .......... .......... .......... .......... 113 GTTTCTCTTT GTTTTGCAGG AAATCTGTCC AAAGCTGAAT GCGGAGATTT TAAGCGAA-A 146459 | |||||||||| |||| ||||| |||||||||| | || ||| | .......... .........G AAATCTGTCC AAAGATGAAT GCGGAGATTT TGAGTGAAGA 154 AATGCAGAAG AGGCCACCTA CGGAGCTTAT GACGGTCCGT CGTGCCTGTG ACAGTCCGTA 146399 ||||||||| || | ||||| | |||||||| |||||||||| ||||| |||| || ||| ||| AATGCAGAAT AGACGACCTA CAGAGCTTAT GACGGTCCGT CGTGCTTGTG ACGGTCTGTA 214 GGTGGCAGCG TAGAGAAGCT GCTGAAGGAA GATAGGGAAG TCTGACCAAG TGTGGGATTA 146339 |||||||||| ||| | |||| |||||| ||| ||| |||||| |||||||||| || || GGTGGCAGCG TAGTGCAGCT GCTGAAAGAA GATGGGGAAG TCTGACCAAG TG-CGG---- 269 CGAAGCTTGT GACGGTCAGT CATGGCTATG ACGGTCCGTC CTGCAGGTAC ATCGTGAAGA 146279 | || | |||| ||| | | ||| |||||||||| |||||||| | || ||||| -G--GC---T -ACGG--AGT --T--C-ATG ACGGTCCGTC CTGCAGGTTC GTCATGAAGT 315 TCAGAGAAGT GATCCCAGTA CCAAGATTCC AAGATTTGAA GTATTTTGAA ACG-AGACCC 146220 |||||||||| |||||||| || | ||||| |||| || || || | ||||| ||| |||||| TCAGAGAAGT AGTCCCAGTA CCCATATTCC AAGAGTTCAA GTGTGTTGAA ACGAAGACCC 375 TCGATGAACC GTTGTGCTTA TGACGGTCCG TCACACTTGC CGTCGAGGGA AATGAAGAAA 146160 ||||| ||| ||||||| || |||||||||| ||| || ||| ||||||||| |||||||| | TCGATAGACC GTTGTGCCTA TGACGGTCCG TCATACCTGC CGTCGAGGGT AATGAAGAGA 435 GCAGCAGAAG -AATTGCACC AAGTATGGGA 146131 | |||| ||| ||||||| |||||||||| GAAGCAAAAG AAATTGCA-T AAGTATGGGA 464 hqPGS_C04HBa0031H05.1-_SGN-E255290+ (146498 146131) ******************************************************************************** EST sequence 91 +strand 402 n (File: SGN-E258181+) 1 GACGTATGGT GCAAGGTTTA TCTCACGAAA AAGATATACT GGTGGTCATG TTCTCAATGT 61 TTTCGACGCC AAGCATCTCC ATTCAGTAGT AAGCGATTTA CTTTTTAAGG AAATCTGTCC 121 AAAGATGAAT GCGGAGATTT TGAGTGAAGA AATGCAGAAT AGACGACCTA CAGAGCTTAT 181 GACGGTCCGT CGTGCTTGTG ACGGTCTGTA GGTGGCAGCG TAGTGCAGCT GCTGAAAGAA 241 GATGGGGAAG TCTGACCAAG TGCGGGGCTA CGGAGTTCAT GACGGTCCGT CCTGCAGGTT 301 CGTCATGAAG TTCAGAGAAG TAGTCCCAGT ACCCATATTC CAAGAGTTCA AGTGTGTTGA 361 AACGAAAACC CTCTATAGAC CGTTGTGCCT ATGACGGTCC GT Predicted gene structure (within gDNA segment 148170 to 143986): Exon 1 147477 147471 ( 7 n); cDNA 103 109 ( 7 n); score: 1.000 Intron 1 147470 146499 ( 972 n); Pd: 0.593 (s: 0), Pa: 0.998 (s: 0.89) Exon 2 146498 146189 ( 310 n); cDNA 110 402 ( 293 n); score: 0.819 MATCH C04HBa0031H05.1- SGN-E258181+ 0.819 317 0.789 C PGS_C04HBa0031H05.1-_SGN-E258181+ (147477 147471,146498 146189) Alignment (genomic DNA sequence = upper lines): TTTTAAGGTG ATAGCTTGGT CCATCTGTAC CAGGGATATC CTTAATTCTC CATCTGTCAA 147418 ||||||| TTTTAAG... .......... .......... .......... .......... .......... 109 CCCAGCTGGG TTACAAGCAT CTCCATTTCA CCAGTTGGGG CCTGGGGAGG AATTTGGTTG 147358 .......... .......... .......... .......... .......... .......... 109 CCCTAGCAAC TGCTTCTCCT CGTCCCTGAC CACTGTTCCT CTTTGTGTTC ATTTTTTTTG 147298 .......... .......... .......... .......... .......... .......... 109 AAAAAGTAGA ATTGATGTTC GATAAGCTCA TAACACCAAG GAATCAGACA TTAGAGAAGG 147238 .......... .......... .......... .......... .......... .......... 109 CACGATAAGA TAGAAGAAGG GAATTTTCCT ACGCATCATG CAGTCTCTAA TTTAGGATAG 147178 .......... .......... .......... .......... .......... .......... 109 TGGTGCACTT CACTACCATG ACTTAGAAAC TACTCAATGT GGTTGATGTG AACTTATTAT 147118 .......... .......... .......... .......... .......... .......... 109 ACTCGGAATT TAACCTAATT CTTTGATACC AACTTGGTCA TGACCGGAAT CTAGACCCCA 147058 .......... .......... .......... .......... .......... .......... 109 GACGATATCA GCGTCGTTGA CCTCTCTGAG GTCGCAGACA AGCCTACTTA CGTCATTCTT 146998 .......... .......... .......... .......... .......... .......... 109 ACTTCATCTG GATTAATTAT AGCAGAAAAT TTGAAACTTT TTGTTTCTTA ACATACTAAT 146938 .......... .......... .......... .......... .......... .......... 109 AATTCTATTA AATTCATAAT TTTTCATCCT CAACCATCTA ACATTAATAT AATCAAATGA 146878 .......... .......... .......... .......... .......... .......... 109 AAGAAATAGT TTAATATAGC ATTAAATGTA TACTTGCCAA AATGGCACGA TACGATGTCT 146818 .......... .......... .......... .......... .......... .......... 109 GAAGAAAAAT AGAAAGAAAC ACTAGTGGAA CATGCTCCAC TAACTATAGC CTACATCTAA 146758 .......... .......... .......... .......... .......... .......... 109 GCTAGATAAA AATGGTATAC ATCATCGAAT GCATGAGAGC CTACGAAGTC GGGATGAAAG 146698 .......... .......... .......... .......... .......... .......... 109 CTCCACGTCC AGATAACTGC AACGCCAACC TGTAAGCTCT AGCGTCCACC TGTGCCTGCA 146638 .......... .......... .......... .......... .......... .......... 109 CCTAAAATTG TAGAATTGTA TGGGATTAGT ATTGATATAC CGTGGTTTCA CGGTATAATT 146578 .......... .......... .......... .......... .......... .......... 109 AATACTTTTT CCTTAAGTTT AGTGTGTCCG AAAGCCCTTT TTGTGCTAAT TTTGATATAA 146518 .......... .......... .......... .......... .......... .......... 109 GTTTCTCTTT GTTTTGCAGG AAATCTGTCC AAAGCTGAAT GCGGAGATTT TAAGCGAA-A 146459 | |||||||||| |||| ||||| |||||||||| | || ||| | .......... .........G AAATCTGTCC AAAGATGAAT GCGGAGATTT TGAGTGAAGA 150 AATGCAGAAG AGGCCACCTA CGGAGCTTAT GACGGTCCGT CGTGCCTGTG ACAGTCCGTA 146399 ||||||||| || | ||||| | |||||||| |||||||||| ||||| |||| || ||| ||| AATGCAGAAT AGACGACCTA CAGAGCTTAT GACGGTCCGT CGTGCTTGTG ACGGTCTGTA 210 GGTGGCAGCG TAGAGAAGCT GCTGAAGGAA GATAGGGAAG TCTGACCAAG TGTGGGATTA 146339 |||||||||| ||| | |||| |||||| ||| ||| |||||| |||||||||| || || GGTGGCAGCG TAGTGCAGCT GCTGAAAGAA GATGGGGAAG TCTGACCAAG TG-CGG---- 265 CGAAGCTTGT GACGGTCAGT CATGGCTATG ACGGTCCGTC CTGCAGGTAC ATCGTGAAGA 146279 | || | |||| ||| | | ||| |||||||||| |||||||| | || ||||| -G--GC---T -ACGG--AGT --T--C-ATG ACGGTCCGTC CTGCAGGTTC GTCATGAAGT 311 TCAGAGAAGT GATCCCAGTA CCAAGATTCC AAGATTTGAA GTATTTTGAA ACG-AGACCC 146220 |||||||||| |||||||| || | ||||| |||| || || || | ||||| ||| | |||| TCAGAGAAGT AGTCCCAGTA CCCATATTCC AAGAGTTCAA GTGTGTTGAA ACGAAAACCC 371 TCGATGAACC GTTGTGCTTA TGACGGTCCG T 146189 || || ||| ||||||| || |||||||||| | TCTATAGACC GTTGTGCCTA TGACGGTCCG T 402 hqPGS_C04HBa0031H05.1-_SGN-E258181+ (146498 146189) ******************************************************************************** EST sequence 7 -strand 716 n (File: SGN-E578039-) 1 GTAATCCTTA TACTCAAACT AAAATCACTG TGTGAAAAAG GAGGATTTTG TCTTATAGTG 61 AGGACACTAG TTGCAATACT AGAATTGTTA GCACCTCGGT GAGAAATTGA AGAGGATAGG 121 TGTTAGTGCA TGGTAAGTCT GTGTCATATT CTGATCCCAC AAAATTCAAA CCTAATAGTG 181 ATAGCATGCA TAGATTTGAT GAGATTAATC GGGATTGATA GCCAAATGAT TGCAAAGGAT 241 AAAACATGGA TACTATTGTA CAAAGATTGT GTAGTGAGTC ATAGTGCGTC GCTTGAGGAC 301 AAACAACTAA TTTAAGTTGA GGGTGTTGAT ATACCGTGGT TTCACGGTAT TATTAATACT 361 TTTTCCTTAA GCTTAGTGTG TCCAAAAGCC TTTTTGTGCT AATTTTTATA TAAGTTACTC 421 TTTGTTTTGC AGGAAATCTG TCCAAAGCTG AATGCGGAGA TTTTGAGCGA AGAAATGCAG 481 AAGAAACCAC CTACGGAGCT TATGACGGTC CGTCGTGCTT GTGACGGTCC GTAGGTGGAA 541 GCGTAGTGCA GCTGCTGAAG GAAGATAGGG AAGTCTGACT AAGTGTGGGA TTACGAAGCT 601 TGTGACGGTC CGTCGTGGAT CTGACGGTCC GTCCTGCAGG TTCGTCGTGA AGTTCAGAGA 661 AGTGATCCCA GTACCCAAAT TCCAAGAGTT GAAGTGTATT AGAACAAAGA CCCTCG Predicted gene structure (within gDNA segment 150466 to 145247): Exon 1 146606 146217 ( 390 n); cDNA 326 716 ( 391 n); score: 0.910 MATCH C04HBa0031H05.1- SGN-E578039- 0.910 390 0.545 C PGS_C04HBa0031H05.1-_SGN-E578039- (146606 146217) Alignment (genomic DNA sequence = upper lines): TTGATATACC GTGGTTTCAC GGTATAATTA ATACTTTTTC CTTAAGTTTA GTGTGTCCGA 146547 |||||||||| |||||||||| ||||| |||| |||||||||| |||||| ||| |||||||| | TTGATATACC GTGGTTTCAC GGTATTATTA ATACTTTTTC CTTAAGCTTA GTGTGTCCAA 385 AAGCCCTTTT TGTGCTAATT TTGATATAAG TTTCTCTTTG TTTTGCAGGA AATCTGTCCA 146487 ||| |||||| |||||||||| || ||||||| || ||||||| |||||||||| |||||||||| AAG-CCTTTT TGTGCTAATT TTTATATAAG TTACTCTTTG TTTTGCAGGA AATCTGTCCA 444 AAGCTGAATG CGGAGATTTT AAGCGAA-AA ATGCAGAAGA GGCCACCTAC GGAGCTTATG 146428 |||||||||| |||||||||| |||||| || |||||||||| |||||||| |||||||||| AAGCTGAATG CGGAGATTTT GAGCGAAGAA ATGCAGAAGA AACCACCTAC GGAGCTTATG 504 ACGGTCCGTC GTGCCTGTGA CAGTCCGTAG GTGGCAGCGT AGAGAAGCTG CTGAAGGAAG 146368 |||||||||| |||| ||||| | |||||||| |||| ||||| || | ||||| |||||||||| ACGGTCCGTC GTGCTTGTGA CGGTCCGTAG GTGGAAGCGT AGTGCAGCTG CTGAAGGAAG 564 ATAGGGAAGT CTGACCAAGT GTGGGATTAC GAAGCTTGTG ACGGTCAGTC ATGGCTATGA 146308 |||||||||| ||||| |||| |||||||||| |||||||||| |||||| ||| ||| | ||| ATAGGGAAGT CTGACTAAGT GTGGGATTAC GAAGCTTGTG ACGGTCCGTC GTGGATCTGA 624 CGGTCCGTCC TGCAGGTACA TCGTGAAGAT CAGAGAAGTG ATCCCAGTAC CAAGATTCCA 146248 |||||||||| ||||||| | |||||||| | |||||||||| |||||||||| | | |||||| CGGTCCGTCC TGCAGGTTCG TCGTGAAGTT CAGAGAAGTG ATCCCAGTAC CCAAATTCCA 684 AGATTTGAAG TAT-TTTGAA ACGAGACCCT CG 146217 ||| |||||| | | || ||| ||||||| || AGAGTTGAAG TGTATTAGAA CAAAGACCCT CG 716 hqPGS_C04HBa0031H05.1-_SGN-E578039- (146606 146217) ******************************************************************************** EST sequence 2 -strand 411 n (File: SGN-E577891-) 1 GCCAACAATG GCCTTCGAGT TCATGTCCCT GATATACCGT GGTTTCACGG TATAATTAAT 61 ACTTTTGCCT TAAGTTTAGT GTGTCCGTAA GCCTTTTTGT GCTAATTTTG GTATAAGTTT 121 CTCTTTATTT TGCAGGAAAT CTGTCCAAAG CTGAAAGCAG AGATTTTGAG CGAAAAAATG 181 TAGAAGAGAC CACCTACTGA GCTTATGACG GTCCATCGTG CCTTTGACGC TCCGTAGGTG 241 GCAGCGTAGA GAAGCTGCTG AAGGAAGATG GGGAAGTCTC ACCAAGTGTG GGATTACGAA 301 GATTGTGACG GTCCGTCATG GCTATGACGG TCCGTCCTGC AGGTTCGTCG TGAAGATCAG 361 AGAAGTGATT CCAGTACCCA GATTCCAAGA GCTGAAGTAT TTTGAAACGA A Predicted gene structure (within gDNA segment 147505 to 145246): Exon 1 146605 146225 ( 381 n); cDNA 30 410 ( 381 n); score: 0.928 MATCH C04HBa0031H05.1- SGN-E577891- 0.928 381 0.927 C PGS_C04HBa0031H05.1-_SGN-E577891- (146605 146225) Alignment (genomic DNA sequence = upper lines): TGATATACCG TGGTTTCACG GTATAATTAA TACTTTTTCC TTAAGTTTAG TGTGTCCGAA 146546 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||| | TGATATACCG TGGTTTCACG GTATAATTAA TACTTTTGCC TTAAGTTTAG TGTGTCCGTA 89 AGCCCTTTTT GTGCTAATTT TGATATAAGT TTCTCTTTGT TTTGCAGGAA ATCTGTCCAA 146486 || ||||||| |||||||||| || ||||||| |||||||| | |||||||||| |||||||||| AG-CCTTTTT GTGCTAATTT TGGTATAAGT TTCTCTTTAT TTTGCAGGAA ATCTGTCCAA 148 AGCTGAATGC GGAGATTTTA AGCG-AAAAA TGCAGAAGAG GCCACCTACG GAGCTTATGA 146427 ||||||| || |||||||| |||| ||||| || ||||||| |||||||| |||||||||| AGCTGAAAGC AGAGATTTTG AGCGAAAAAA TGTAGAAGAG ACCACCTACT GAGCTTATGA 208 CGGTCCGTCG TGCCTGTGAC AGTCCGTAGG TGGCAGCGTA GAGAAGCTGC TGAAGGAAGA 146367 |||||| ||| ||||| |||| |||||||| |||||||||| |||||||||| |||||||||| CGGTCCATCG TGCCTTTGAC GCTCCGTAGG TGGCAGCGTA GAGAAGCTGC TGAAGGAAGA 268 TAGGGAAGTC TGACCAAGTG TGGGATTACG AAGCTTGTGA CGGTCAGTCA TGGCTATGAC 146307 | |||||||| | |||||||| |||||||||| ||| |||||| ||||| |||| |||||||||| TGGGGAAGTC TCACCAAGTG TGGGATTACG AAGATTGTGA CGGTCCGTCA TGGCTATGAC 328 GGTCCGTCCT GCAGGTACAT CGTGAAGATC AGAGAAGTGA TCCCAGTACC AAGATTCCAA 146247 |||||||||| |||||| | | |||||||||| |||||||||| | |||||||| ||||||||| GGTCCGTCCT GCAGGTTCGT CGTGAAGATC AGAGAAGTGA TTCCAGTACC CAGATTCCAA 388 GATTTGAAGT ATTTTGAAAC GA 146225 || |||||| |||||||||| || GAGCTGAAGT ATTTTGAAAC GA 410 hqPGS_C04HBa0031H05.1-_SGN-E577891- (146605 146225) ******************************************************************************** EST sequence 54 -strand 222 n (File: SGN-E356584-) 1 AGTTTAGTGT GTCCAAAAGC CTTTTTGTGC TAATTTTGAT ATAAGTTTCT CTTTATTTGC 61 AGGAAATCTG TGTAAAAGAT GAATTCAAAA GTTTTTGAGC ATGAAATACA GAAAAGTACA 121 ACCTACTGAG CTTTTCACGG TCCGTCATCC TCGTGCCGGT CCATAGGTGA CATCGTAGTT 181 CTGCTGATGA AGGAAGATGG GGAATTCTGA ACAAGTGTGG GG Predicted gene structure (within gDNA segment 147342 to 144380): Exon 1 146562 146343 ( 220 n); cDNA 1 221 ( 221 n); score: 0.789 MATCH C04HBa0031H05.1- SGN-E356584- 0.789 220 0.991 C PGS_C04HBa0031H05.1-_SGN-E356584- (146562 146343) Alignment (genomic DNA sequence = upper lines): AGTTTAGTGT GTCCGAAAGC CCTTTTTGTG CTAATTTTGA TATAAGTTTC TCTTTGTTTT 146503 |||||||||| |||| |||| |||||||||| |||||||||| |||||||||| ||||| ||| AGTTTAGTGT GTCCAAAAG- CCTTTTTGTG CTAATTTTGA TATAAGTTTC TCTTT-ATTT 58 GCAGGAAATC TGT-CCAAAG CTGAATGC-G GAGATTTTAA GCGAAAAATG CAGAAGAGGC 146445 |||||||||| ||| |||| ||||| | || |||| | || |||| ||||| || GCAGGAAATC TGTGTAAAAG ATGAATTCAA AAGTTTTTGA GCATGAAATA CAGAAAAGTA 118 CA-CCTACGG AGCTTATGAC GGTCCGTCGT GCCTGTGACA GTCCGTAGGT GGCAGCGTAG 146386 || ||||| | ||||| | || |||||||| | | ||| | |||| ||||| | || ||||| CAACCTACTG AGCTTTTCAC GGTCCGTCAT CCTCGTGCCG GTCCATAGGT GACATCGTAG 178 AGAAGCTGCT GAAGGAAGAT AGGGAAGTCT GACCAAGTGT GGG 146343 |||| | |||||||||| ||||| ||| || ||||||| ||| TTCTGCTGAT GAAGGAAGAT GGGGAATTCT GAACAAGTGT GGG 221 hqPGS_C04HBa0031H05.1-_SGN-E356584- (146562 146343) ******************************************************************************** EST sequence 61 -strand 806 n (File: SGN-E546254-) 1 GTGGGAAGAA TCTCGGGCTG ATAGCATTCG CGCTCTCCTT ATCCGGCCAC AATATACTAA 61 AGCTCTTTAT CGAAAAGCTG CCTCAAGTAT CAAGCTGGAA AGATGGGCTG ATGCTGTGAG 121 CGATTATGAG TTTCTGCGGC AGCAACTTCC AAGTAACAAA GTGGTTGCTG AAAATTTATC 181 CCATGCCCGA GCTGAATTAA GGAAGTCACG CAGAAAAGGT AATTTCATGG TGGAGTTGAT 241 TTCAGATCTT GACAAGTTCC GGGCTGCGAT TGCATCTGGT CAATCTGTGG TCTATTTTGA 301 TGAATTATCC AACCCAGAAA GCACGTGGAT GTCCTATATC ATGGATACCT TGAACGCCGA 361 ATATCCTTCA GTAACTTTTC TCGAGGTGGA CGTGAAACAG AGTCCAGCGA TCGCTACAGC 421 AGAGAAAATT AAAGTAGCAC CTAGGATTAA GCTTTACAAC AATGGCAGTC GTGTGGCGGA 481 AACGGTTGTG CTAACTCCAG ATTCGTTGGA GTTATTAATT AAGAACACCC TCGTATGTCC 541 CCCCGGATGG TTTGGTGTTA CCTCTGTCAC GACCGGAATC TAGACCCCAG ACGAGACCGG 601 CGTCGTTGAC CTCTCAGAGG TCGCAGACAA GCCTACTTAC GTCATTCTTA CTTTACATAG 661 ATAAATTTTA GCGAAAAATT TGAATTTTTT TTTTTGATTC TTTAATCATA CTTGCTGAAT 721 ATTCTTAACA TTTCATAATC GTTCATCATC AACCATCTAA CATTTAAGAG ATAAAAAAAA 781 AAAAAAAAAA ACTCGAGGGG GGCCCG Predicted gene structure (within gDNA segment 153386 to 144864): Exon 1 152694 152683 ( 12 n); cDNA 533 543 ( 11 n); score: 0.583 Intron 1 152682 147104 (5579 n); Pd: 0.946 (s: 0), Pa: 0.000 (s: 0.76) Exon 2 147103 146913 ( 191 n); cDNA 544 734 ( 191 n); score: 0.764 PPA cDNA 771 791 MATCH C04HBa0031H05.1- SGN-E546254- 0.764 203 0.252 C PGS_C04HBa0031H05.1-_SGN-E546254- (152694 152683,147103 146913) Alignment (genomic DNA sequence = upper lines): GTTCGACCCT CAGTGACCTC ACTTCTTTTT CTTCAATTTT CATAACATTG TAAACCATTT 152635 || | ||| | GTATGTCCCC C-........ .......... .......... .......... .......... 543 AACTTGACCA AAATTCATCA ATTGAGGCTG GAAATTTTTG TAAAATTTTT CAGCATCTTT 152575 .......... .......... .......... .......... .......... .......... 543 TTCAACAAGT TACATACTAG TTCGTGGGGA AACCTTTATG GTTCATTTAT AACGTTTTAG 152515 .......... .......... .......... .......... .......... .......... 543 GTTCATTTTC ATGAATTCGT TTGGCCAAGA GTTTCTCACT TATTTCAGCC ACATAACATT 152455 .......... .......... .......... .......... .......... .......... 543 TCATATGAAC ATCACAATTT ACTTAAGTTT GTGGACGTAA AAATACAACC ATAATACATC 152395 .......... .......... .......... .......... .......... .......... 543 ATTTTTTTAG CCTTAAACCA GAGTGTTATG GGCCATAGTT TACATTTTGC ACACACTTTC 152335 .......... .......... .......... .......... .......... .......... 543 ACATAGTTCA GAAAAAATGG GTTTTTATTC ATACAATTTC AAACATACAT TCATGAACAT 152275 .......... .......... .......... .......... .......... .......... 543 ATTCGTCATG AAAACACAAC ACATGCCTAA TATCTACCAG CAAACATACC TAACCTAAGA 152215 .......... .......... .......... .......... .......... .......... 543 ATCATTGGGA GATAGTGACA AGGACATGCA ACGGGGACCA ACCCTAGTAT TCGGAATAGA 152155 .......... .......... .......... .......... .......... .......... 543 TTCATCTGAA CCTTAAGGGG TCTTTTGGGA AGGGACCAAG AGAGAAGACA ACCCATAACT 152095 .......... .......... .......... .......... .......... .......... 543 TTTTGACGTT CAAACCTAGA CTTGATGCCC AAAGATTTCC TCCAAACACA CGTCCAACAC 152035 .......... .......... .......... .......... .......... .......... 543 CAAAAGTTCA ACACTAAACT CGACAGAAAA CCTTCTCTTT GCCTACGTGA TTAATTAGTT 151975 .......... .......... .......... .......... .......... .......... 543 GTTTGTTTAT AATTTTCATT TGTGAGTACT TCAAGTGTGA AGAACTTTGG TTTACCTAAT 151915 .......... .......... .......... .......... .......... .......... 543 GTTCTTGAAG TTATTATCTA GAGAGAATCA TAAAAAAAAA GAGATTGAAC GTGAAAGTTG 151855 .......... .......... .......... .......... .......... .......... 543 AGAGATAGAT GTGAGAGAGT GGGAGTTTTA TTAGGCTTAG GAGTTTAGTT TAGGACTTAG 151795 .......... .......... .......... .......... .......... .......... 543 TCAAATAAGG TTTTATCAAA TAAAAATCTG ATTTCCCTTT TATTTTAAAT CATATAATGA 151735 .......... .......... .......... .......... .......... .......... 543 ATAATAATTA TTAATTAATT ACATTAATTT AACAACTTAA ATAAAAACAA CTTTAATTCA 151675 .......... .......... .......... .......... .......... .......... 543 TTCTTTCTAC CTAAGTTCGA ACCAGGGTGG AGCAAGACTT CATTTCAAGG GCCCATTTTT 151615 .......... .......... .......... .......... .......... .......... 543 GGCCCTCTCT TCCCAAAATG CCCCTCCACC TTATTAAATA AATAATTAAT TATATATTTA 151555 .......... .......... .......... .......... .......... .......... 543 GGGTAATTAC GATACTACCC TTAGCCTAAC AAAAGACCTT TTTACCCCTA GATCCTCCTA 151495 .......... .......... .......... .......... .......... .......... 543 AACTATGATT TTCCCTTTTT AAGTCCGGTA AAGACTCATT CGAGTAAATC TTTGTATTCG 151435 .......... .......... .......... .......... .......... .......... 543 AGAGCCCTAC ATGGTTGGAA CCAACCTTTA CTAGCTCAAC TAACTCCCCA AGTTAGTTGT 151375 .......... .......... .......... .......... .......... .......... 543 CTTGGTTGTC GTAAGTGTTT CGAGGTCTAG TTCTACGCGC ATCAATCCAT GTGAACCTTG 151315 .......... .......... .......... .......... .......... .......... 543 GTCTAATTGT AGGTATTCTA GACACATTAA GCATTATTAG CATAGCCATT TTTAGGGTTG 151255 .......... .......... .......... .......... .......... .......... 543 TTACATTATC CCCATCAGGA ACATTAGACC CTGACACTAC TAACTATTTC GCGTAATGCC 151195 .......... .......... .......... .......... .......... .......... 543 AGTCAGATTA TAACAGTTAT TACACACGAG CAAGCAATAG CAACAAAGAA TGGAGAGATA 151135 .......... .......... .......... .......... .......... .......... 543 AGGAAACTTA GACTTAAGAG TAGGAAGTCT AACCTTAAGA GCTGAAAAGA TGGGGGTAGA 151075 .......... .......... .......... .......... .......... .......... 543 GGGATCTCAT ATCGGCCTCG GCCTCCCACA TATCACCCTC TACAAGATGA TTCCTCTACA 151015 .......... .......... .......... .......... .......... .......... 543 ATGCCTTCAC CGTGGATATC TCCTTGTTCC TCAGCCGCTT GACCTGTCTG TCTAAAATCT 150955 .......... .......... .......... .......... .......... .......... 543 CAACAGGTAC CTCCTCATAG GACAAATTTT CATCAACCCT CAAAACTTTA ACCGGTAGAA 150895 .......... .......... .......... .......... .......... .......... 543 TCGATGATGG ATCACCACCT AAGCACTTCT TTAACATAGA GACATGAAAG ACTAGATGAA 150835 .......... .......... .......... .......... .......... .......... 543 CAGAATCTAG CTCCACTGGC AATGCCAACT CATAGGCCAG CTCTCCCACA CGCTGTAGGA 150775 .......... .......... .......... .......... .......... .......... 543 TCTCATATGG ACCAACATAC CTCGAACTCA CCTTCCCTTT CCTGACAAAC CTTATCACCC 150715 .......... .......... .......... .......... .......... .......... 543 CCTTCATAGG TGATATCTTC AAATAGATCT GGTCACAAAC ATCAAACTCT AAGGGTCATT 150655 .......... .......... .......... .......... .......... .......... 543 TTTTGTTGTT TGCATAAGAC TTCTGCCGAC TGTAAGGAGT AGCCAAACTA TCCCTAATCA 150595 .......... .......... .......... .......... .......... .......... 543 CTCTGACCTT CTCTAAGGCC TAATGAATGA TCTCTGGACC CAAAATGGAT GACTCTCCAA 150535 .......... .......... .......... .......... .......... .......... 543 CCTCGAACCA CCCAACTGGA GATCTACACC TCCTACAATA CAGTGCCTCA AACGGTGCCA 150475 .......... .......... .......... .......... .......... .......... 543 TCTCTATACT GGAGTAATAG CTATTATTAT ACGAGAACAG TATCAAAAAC AGATGGTCAA 150415 .......... .......... .......... .......... .......... .......... 543 CCCAACTACC CTTGAAGTCT ATCACACATG CCCTCATCAT GTACTACAAT GTCTAAATGG 150355 .......... .......... .......... .......... .......... .......... 543 TGCGCTCTGC CTGCCCATTA GTCTTATGAT AAAAGGCAGT ACTAATCTTT ACCTGCATGC 150295 .......... .......... .......... .......... .......... .......... 543 CTAAGATCTT CTGGAAGGAT CTCCACAAAT GTGAAGTGAA CTGAGCTCCT CTATCTGAAA 150235 .......... .......... .......... .......... .......... .......... 543 TGATAGATAA AAGAATCCCA TGCCATCTCA CAATCTTATC AATGTAGAGT TTCGCAACAT 150175 .......... .......... .......... .......... .......... .......... 543 CATCGGCTCT GTAAGTAGAC TTTACAGGGA TAAAGTGGTC ATACTTAGTC ATTCTGTCCA 150115 .......... .......... .......... .......... .......... .......... 543 CGATAACCCA TATGGAGTCA CGATGTCTCC TAGTCTTCGT AATACTAACC ACAAAATCCA 150055 .......... .......... .......... .......... .......... .......... 543 TATTAATGGC CGCTCATTTC CAAGTCGGAA TCTCAATAAT CTAAGTAAGA CTGTCAAGCT 149995 .......... .......... .......... .......... .......... .......... 543 TTAGATGTTC TGCCTTAACC TGTTGACGAT TAGGACACCT GGCCACATAT TCTGAAATGT 149935 .......... .......... .......... .......... .......... .......... 543 CTTTCTTCAT TCCATCCCAC CAATAGATCT GCTTAAGATC ATGATACATC TTAGTGGAAC 149875 .......... .......... .......... .......... .......... .......... 543 CTGGATGTAT GAAATATCTG GAACCATGAG CCTCTCCAAT GATCCTGGTC CGCAAATCAT 149815 .......... .......... .......... .......... .......... .......... 543 CCACATTTGG TAACCACATC CTGTCCTGGT ACCTAAGTAT ACCATCATCT CCAAAATCAA 149755 .......... .......... .......... .......... .......... .......... 543 AAGACTTATT CATCTTAACC AACACTGAGT CCTTCAGCTC CATCAAAAAG AATCAAGATG 149695 .......... .......... .......... .......... .......... .......... 543 CTAACCCTCC TTGACTTCAA CTACTAAGGA TGATTCAGAA CTAGGATGAA CTGAAACACC 149635 .......... .......... .......... .......... .......... .......... 543 CCCATTAGTA GAGTCAACTA ACCGTACACC CAGTCTAGAC AGTCTGTGTA TATCCTTCAC 149575 .......... .......... .......... .......... .......... .......... 543 CAACTCCTTC TTCCCATCCT CAACATGGGT TGTACTTCCC ATGCCCATCC TACTCAAAGC 149515 .......... .......... .......... .......... .......... .......... 543 ATCAACTACA ATATCAGCAT TAATTTGATG GTAGTGAACG TTCATTTCAT AGTATCTCTG 149455 .......... .......... .......... .......... .......... .......... 543 TGTGAACACG TATTGGAGAC TCTTATGGTC TGTGAACACA TCCACATGCA CTCCATACAA 149395 .......... .......... .......... .......... .......... .......... 543 GTAGTGCCTC CATAATTTAA GTGCAAACAC CACAGTTACC AACTCCAGGT CATGAGTAGG 149335 .......... .......... .......... .......... .......... .......... 543 ATAATTCTTC TCATGAACCT TGAGTTGTCT GGATGATGAA CCTTGAGTTG TCTGGATGCA 149275 .......... .......... .......... .......... .......... .......... 543 TAAGTTATTA CCTTACCACC CTGCATAAAA ACACAACCCA AACAAACCCT AGATGCATCA 149215 .......... .......... .......... .......... .......... .......... 543 CAATAAACAG TGTAATTCTC ACCACACTTA GGCAAAGTAA GCACCGGGGC TGAAGTGAGT 149155 .......... .......... .......... .......... .......... .......... 543 CTGTCCTTGA GCTCCCAGAA ACTCTTCTCA TAAGCCTCCT TCCATTAGAA CTTGGAATTC 149095 .......... .......... .......... .......... .......... .......... 543 TTCTTAGTCA AAGCTGTCAG TGAGGCAGCA ATGGAAGAAA AACCCTTCAC GGACCTACGA 149035 .......... .......... .......... .......... .......... .......... 543 TAATAACCAG CCAATCCCAA GAAGCTATAA ATATCTGTGG GAGTAAGAGG TTTTGGCCAG 148975 .......... .......... .......... .......... .......... .......... 543 TTCTTAACAG CTTCAGTCTT CCTGGGATCT ACCTCCACAC CTTTGTAGGA CACAACATGA 148915 .......... .......... .......... .......... .......... .......... 543 CCTAGGAAGA CCTCTGATTT AAGCCAGAAT TCCACTTGCT GAATTTGGCA TACATCTGAT 148855 .......... .......... .......... .......... .......... .......... 543 GTTGTCTAAG TACCTGCAAG GTTAGTCTCA AATGTTGTTC ATGCTCTTCC TTGGTCTTAG 148795 .......... .......... .......... .......... .......... .......... 543 AGTAGATGAG AATTTCATCA ATGAATACTA TGACAAAGGA GTCAAGATAT CATGGAAGAC 148735 .......... .......... .......... .......... .......... .......... 543 CCTGTTCATG AGATCCATAA ATGCAGTAGG TGCATTTGTG AGACCAAATG ACATAACTAG 148675 .......... .......... .......... .......... .......... .......... 543 GAATTCATAA TGGCCATAAT GTGTGCGAAA GGCTGTCTTT GGGAAATCTC CATCCCTAAC 148615 .......... .......... .......... .......... .......... .......... 543 CCTGAGTTGA TGGTACCCTG AATGAAGATC AATCTTCGAA AAGAAACTAA ACCCTTGGAG 148555 .......... .......... .......... .......... .......... .......... 543 TTGGTTGAAC AAGTCATCTA TTTTGGGAAG TGGATACTTA TTCTTGATAG TGACTTTCTA 148495 .......... .......... .......... .......... .......... .......... 543 ATGTTGCCCA TAATCGATGC ACATTCTAAG GGTTCCATCT TTCTTTTTCA CAAACAATAG 148435 .......... .......... .......... .......... .......... .......... 543 TAGAGCGCCC CAATGGATAT GCTCGGTTGA ATGAAACCCT TATCAGTGAG ATCGTTTAAC 148375 .......... .......... .......... .......... .......... .......... 543 TGCAGCTTCA ACTCTTTGAG TTCAGCTGGA GCCATTCTGT AAGGAGGAAC TCCATGCAAA 148315 .......... .......... .......... .......... .......... .......... 543 TCATCAGGAA ACACATCTGG AACTCATTCA CCACAAGCAC TGAGTCTATG GAAGGAATGT 148255 .......... .......... .......... .......... .......... .......... 543 CATGGACTAA ATTGATAACA CTCACAAGAT GACACAATAA CCCCTTGGAC ATCATTTTAT 148195 .......... .......... .......... .......... .......... .......... 543 TGGCTTTAAG GTTCGAAATC AAGGGATAAG GACGACTCGA GTTGTACCCC TCCTAGACTA 148135 .......... .......... .......... .......... .......... .......... 543 GCTCTTCTTC ATTAGGGAAA CGAATTTCAC AACCCTATTA CGACAAACCA TGCAAGCATA 148075 .......... .......... .......... .......... .......... .......... 543 ACAATTATGA AGCCATTCCA TGCTAAGAAT AACATCAAAA TCATGCATTG GTAACTCAAC 148015 .......... .......... .......... .......... .......... .......... 543 CAAGTCTGCA CACATAGTCT TACCACATAC AACTATTGGG CAATCCTTGT ATACTCTATC 147955 .......... .......... .......... .......... .......... .......... 543 CGTTCTTACA TTTTCTCTTA AAGGTGTACT AACCATTTTA GGATCATGAA GAACGTCAGG 147895 .......... .......... .......... .......... .......... .......... 543 AAATATCTAA AAGTGAGAGC AATCAAAGGA ATTACAAAGG AAAGCGTAGA CCCTTAGATG 147835 .......... .......... .......... .......... .......... .......... 543 AACTTGACTC CCCTTGGTGT AAGATTCCCT TCTTAAACCT AGGCTTATCC TTGATTTCAG 147775 .......... .......... .......... .......... .......... .......... 543 TACTACTCTT CCTTAAGAAA TTCTTATGAG CTTGCCTTGA CTTGTTCCTT CCTTAGTATG 147715 .......... .......... .......... .......... .......... .......... 543 CTTCCTCTTC CTGCCTTCCT CCACTTGTTG GACACGGACC ATAAGCATGG AAAGTCCCAT 147655 .......... .......... .......... .......... .......... .......... 543 GCTGGCATGC AACATAGCTA TCCTGCACTT CTCCTCGAGA TTCTCAGCAA TCTGAGATCC 147595 .......... .......... .......... .......... .......... .......... 543 TGTGTAAATG GGAGAATTTA GCCTCGTGAA GTCCCTTAAC CTGTTAGTCA TGGTACTAGA 147535 .......... .......... .......... .......... .......... .......... 543 ATGTGGGTTC TTCTTGGGAA TACCTTGTTG CTTTTCCTTG GCTATCACAG CCTGAGCTTT 147475 .......... .......... .......... .......... .......... .......... 543 TAAGGTGATA GCTTGGTCCA TCTGTACCAG GGATATCCTT AATTCTCCAT CTGTCAACCC 147415 .......... .......... .......... .......... .......... .......... 543 AGCTGGGTTA CAAGCATCTC CATTTCACCA GTTGGGGCCT GGGGAGGAAT TTGGTTGCCC 147355 .......... .......... .......... .......... .......... .......... 543 TAGCAACTGC TTCTCCTCGT CCCTGACCAC TGTTCCTCTT TGTGTTCATT TTTTTTGAAA 147295 .......... .......... .......... .......... .......... .......... 543 AAGTAGAATT GATGTTCGAT AAGCTCATAA CACCAAGGAA TCAGACATTA GAGAAGGCAC 147235 .......... .......... .......... .......... .......... .......... 543 GATAAGATAG AAGAAGGGAA TTTTCCTACG CATCATGCAG TCTCTAATTT AGGATAGTGG 147175 .......... .......... .......... .......... .......... .......... 543 TGCACTTCAC TACCATGACT TAGAAACTAC TCAATGTGGT TGATGTGAAC TTATTATACT 147115 .......... .......... .......... .......... .......... .......... 543 CGGAATTTAA CCTAATTCTT TGATACCAAC TTGGTCATGA CCGGAATCTA GACCCCAGAC 147055 | || || || | | | | |||| || |||||||||| |||||||||| .......... .CGGATGGTT TGGTGTTACC TCTGTCACGA CCGGAATCTA GACCCCAGAC 592 GATATCAGCG TCGTTGACCT CTCTGAGGTC GCAGACAAGC CTACTTACGT CATTCTTACT 146995 || | | ||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| GAGACCGGCG TCGTTGACCT CTCAGAGGTC GCAGACAAGC CTACTTACGT CATTCTTACT 652 TCATCTGGAT TAATTATAGC AGAAAATTTG AAACTTTTTG TTTCTTAACA TACTAATAAT 146935 | | | ||| |||| |||| |||||||| || ||||| ||| | || | ||| | TTACATAGAT AAATTTTAGC GAAAAATTTG AATTTTTTTT TTTGATTCTT TAATCATACT 712 TCTATTAAAT TCATAATTTT TC 146913 | | || || ||| || || TGCTGAATAT TCTTAACATT TC 734 hqPGS_C04HBa0031H05.1-_SGN-E546254- (147103 146913) ******************************************************************************** EST sequence 86 -strand 574 n (File: SGN-E356167-) 1 TCAGAGTTAT TAGGGACATG TTGGCTACTG CTTACAGCCG ACAGAAGTCA TATGTTGATA 61 ACTGAAAACG ACCCTTAGAG TTTGATGTTG GTGAACAGGT TGACTTGAAG ATATCACCTA 121 TGAAAGGGGT GATGATATTC TGTTCATCCA GTCTTTCATG TCTCTATGTA GAAGAAGTGC 181 CTAGGTGATC CATCATCAAT CCTACATGTT GAAGGTTTGG GGGTCGGTGA ATACTTCTCT 241 TATGAGGAGG TACCTGTTGA GGTCTTAGAT AGACTGGTCA AGCGGCTGAG GAACAAAGAG 301 ATTGTCATAG TGAAGTTATT GTGGAGAAAT CATCTTTTTG AGGGTGCTAC GTGGGAGGCT 361 GAGGCCGGCT TGAGATTCCA CTACCCTTAT CTTTTCATCT CTTGAAGTTA GACTTCATAC 421 TTTTAAGCCT ATGTTTCCTT ATCTCTCTGT ATTTTGTTGC TATTGATTGA TTGTTCATAG 481 TGATTTTATT GTGATCTGAC CAACAGCACG ATTTGAAGTT GTAGTTTCAT TCGGGGATGA 541 ATGTTCCAAA GGGGGGGGGG GGATAATGTA ACAA Predicted gene structure (within gDNA segment 149358 to 154371): Exon 1 150589 150724 ( 136 n); cDNA 1 136 ( 136 n); score: 0.824 Intron 1 150725 150828 ( 104 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.86) Exon 2 150829 151169 ( 341 n); cDNA 137 474 ( 338 n); score: 0.824 MATCH C04HBa0031H05.1+ SGN-E356167- 0.824 477 0.831 C PGS_C04HBa0031H05.1+_SGN-E356167- (150589 150724,150829 151169) Alignment (genomic DNA sequence = upper lines): TCAGAGTGAT TAGGGATAGT TTGGCTACTC CTTACAGTCG GCAGAAGTCT TATGCAAACA 150648 ||||||| || |||||| | ||||||||| ||||||| || |||||||| |||| | | TCAGAGTTAT TAGGGACATG TTGGCTACTG CTTACAGCCG ACAGAAGTCA TATGTTGATA 60 ACAAAAAATG ACCCTTAGAG TTTGATGTTT GTGACCAGAT CTATTTGAAG ATATCACCTA 150708 || |||| | |||||||||| ||||||||| |||| ||| | | |||||| |||||||||| ACTGAAAACG ACCCTTAGAG TTTGATGTTG GTGAACAGGT TGACTTGAAG ATATCACCTA 120 TGAAGGGGGT GATAAGGTTT GTCAGGAAAG GGAAGGTGAG TTCGAGGTAT GTTGGTCCAT 150768 |||| ||||| ||| | TGAAAGGGGT GATGAT.... .......... .......... .......... .......... 136 ATGAGATCCT ACAGCGTGTG GGAGAGCTGG CCTATGAGTT GGCATTGCCA GTGGAGCTAG 150828 .......... .......... .......... .......... .......... .......... 136 ATTCTGTTCA TCTAGTCTTT CATGTCTCTA TGTTAAAGAA GTGCTTAGGT GGTGATCCAT 150888 |||||||||| || ||||||| |||||||||| ||| ||||| |||| || |||||||||| ATTCTGTTCA TCCAGTCTTT CATGTCTCTA TGTAGAAGAA GTGCCTA--- GGTGATCCAT 193 CATCGATTCT ACCGGTTAAA GTTTTGAGGG TTGATGAAAA TTTGTCCTAT GAGGAGGTAC 150948 |||| || || || ||| || | |||| ||| | | |||| | || || ||| |||||||||| CATCAATCCT ACATGTTGAA GGTTTGGGGG TCGGTGAATA CTTCTCTTAT GAGGAGGTAC 253 CTGTTGAGAT TTTAGACAGA CAGGTCAAGC GGCTGAGGAA CAAGGAGATA TCCACGGTGA 151008 |||||||| | ||||| ||| | |||||||| |||||||||| ||| ||||| || |||| CTGTTGAGGT CTTAGATAGA CTGGTCAAGC GGCTGAGGAA CAAAGAGATT GTCATAGTGA 313 AGGCATTGTA GAGGAATCAT CTTGTAGAGG GTGATATGTG GGAGGCCGAG GCCGATATGA 151068 || ||||| ||| |||||| ||| | |||| ||| || ||| |||||| ||| |||| ||| AGTTATTGTG GAGAAATCAT CTTTTTGAGG GTGCTACGTG GGAGGCTGAG GCCGGCTTGA 373 GATCCCTCTA CCCCCATCTT TTCAGCTCTT AAGGTTAGAC TTCCTACTCT TAAGTCTAAG 151128 ||| || ||| ||| ||||| |||| ||||| | ||||||| ||| |||| | |||| ||| | GATTCCACTA CCCTTATCTT TTCATCTCTT GAAGTTAGAC TTCATACTTT TAAGCCTATG 433 TTTCCTTATC TCTCCATTCT TTGTTGCTAT TGCTTGCTCG T 151169 |||||||||| |||| | | |||||||||| || ||| | | | TTTCCTTATC TCTCTGTATT TTGTTGCTAT TGATTGATTG T 474 hqPGS_C04HBa0031H05.1+_SGN-E356167- (150589 150724,150829 151169) ******************************************************************************** EST sequence 22 +strand 735 n (File: SGN-E327901+) 1 ATGAACAAGA AAAATAAATA GGAAAAAAAA GAGGGTTGTG GGGGGTTTGA ACCCACAACC 61 CCTTGGCCAA GGGAGAGAAT TTCTAAAGAA AAGGAACTAA AAAGAAATGT TAGTGTTGGG 121 GCTCGATCTA GGGTCCTAAT GTCATGATAA ATAAAAATAA AATCAAGGAA AAATGTAAGT 181 TTTGTCTAAG GGATTCCAAC TTGGGTTCCC TTGCCCAAAT TTCCATATTG ATACATAAGT 241 CATACGTGAA TTAAATGTTC AAAAATAATG CCACCTACTT AGATCGAAAT CAAGATCTTG 301 GCATACATAC AAGATACGTA AGTCTTATAC TACATAATCT TAGGAAGATA CGAGTCACTT 361 AACGAACTAT GAATAAAGCC TCATGGCTTG TATGTATAAA CCCATAACTC TAGCATACAT 421 TTAAAAATAA GTGAACCTAA GAATTGTGTA ATGAAATGGT GTAACCCTAA AAGGGTTAAG 481 TACGAGTGTA AAACACAGTA AATTGACATG TGTATTGGAA TACGATGAAA TGATTATTAT 541 GTAATGAAAT GATAAGACCC TAGAAGGGTT AAGCAAGAGT GTGAAACACA CAAATGACCA 601 AGTGCATTGG CATATGATGA AATGAACATT CACGTAGAAA TGTGTGAGTA ATTATGAAGA 661 GCAAATATGC TAATGTTAAT GAATGTGGTG ACNAAATGAT AACAGGATAA TGTAAAAGAT 721 GAGAGCAATC TCAAA Predicted gene structure (within gDNA segment 150405 to 154454): Exon 1 152986 153531 ( 546 n); cDNA 1 548 ( 548 n); score: 0.801 Intron 1 153532 153561 ( 30 n); Pd: 0.000 (s: 0.69), Pa: 0.000 (s: 0.76) ?? Exon 2 153562 153745 ( 184 n); cDNA 549 735 ( 187 n); score: 0.837 MATCH C04HBa0031H05.1+ SGN-E327901+ 0.810 730 0.993 C PGS_C04HBa0031H05.1+_SGN-E327901+ (152986 153531,153562 153745) Alignment (genomic DNA sequence = upper lines): ATAGTCAAGG AAAATTAAAT AAAAAATAAA AG-GGGTTGT -CGGGGTTTG AACCCACAAC 153043 || ||| | |||| ||||| | ||| ||| || ||||||| |||||||| |||||||||| ATGAACAA-G AAAAATAAAT AGGAAAAAAA AGAGGGTTGT GGGGGGTTTG AACCCACAAC 59 CCCTCGGCCA AGAAAGAGAA TTTACAAAGG ATAGAAATAA AAAGGAAATG ATGATGTTGG 153103 |||| ||||| || |||||| ||| |||| | || || | ||| |||||| | |||||| CCCTTGGCCA AGGGAGAGAA TTTCTAAAGA AAAGGAACTA AAAAGAAATG TTAGTGTTGG 119 TGATCGATCT AGGGTCCCAA TGTCATGTGG AATGAAATTA AATAAAAATA AAAATGTAAT 153163 | ||||||| ||||||| || ||||||| ||| ||| || || || | ||||||||| GGCTCGATCT AGGGTCCTAA TGTCATGATA AATAAAAATA AAATCAAGGA AAAATGTAA- 178 GTGTTGCCTA AGGGATTTGA AACCAGGTTT TCTTGACCCA A-TTCCATAT TGATACATAA 153222 || ||| ||| ||||||| | | |||| |||| || | | |||||||| |||||||||| GTTTTGTCTA AGGGATTCCA ACTTGGGTTC CCTTGCCCAA ATTTCCATAT TGATACATAA 238 GTCATACGTG AATTAAATAT TCAATAATAA TGATGCCTAC TTAGATCGAA ATCAAGATCT 153282 |||||||||| |||||||| | |||| ||||| || ||||| |||||||||| |||||||||| GTCATACGTG AATTAAATGT TCAAAAATAA TGCCACCTAC TTAGATCGAA ATCAAGATCT 298 TGGCTTATAT AAAAGATGCA TAAGTCTTGT ATCATATAAT CTTAGGAAGA TATGAATCAC 153342 |||| || || | ||||| | |||||||| | | | ||||| |||||||||| || || |||| TGGCATACAT ACAAGATACG TAAGTCTTAT ACTACATAAT CTTAGGAAGA TACGAGTCAC 358 TTAAACGAAC TATGAGCGAA GCCTCATGAC TTGTATGTAT AGACCCACAA GTCTAGCATA 153402 || ||||||| ||||| || |||||||| | |||||||||| | ||||| || ||||||||| TT-AACGAAC TATGAATAAA GCCTCATGGC TTGTATGTAT AAACCCATAA CTCTAGCATA 417 CGTTTAAAAA TAAGTGAACC TAAGATGTAT GTAATGAAAT GATGTAACCC TAGAATGGTC 153462 | |||||||| |||||||||| ||||| | | |||||||||| | |||||||| || || ||| CATTTAAAAA TAAGTGAACC TAAGAATTGT GTAATGAAAT GGTGTAACCC TAAAAGGGTT 477 AAGTAAGAGT GTGTAACACT CTAAATGGCC AAGTGCATTG GCACATGATG AAATGA--AC 153520 ||||| |||| || ||||| ||||| | | | ||| |||| | | | |||| |||||| | AAGTACGAGT GTAAAACACA GTAAATTGAC ATGTGTATTG GAATACGATG AAATGATTAT 537 AATGAAATGA ACAATAAAAC AATTAAATGA ACAATGAAAT GATG--AA-A CCATAGAAGG 153577 ||| ||||| | ||| || | || ||||||| TATGTAATGA A......... .......... .......... .ATGATAAGA CCCTAGAAGG 567 GTTAAGTAAG AGTGTGAAAC ACACTAAATG GCCAAGTGTA TTGGCATATG AGGAAATGAA 153637 |||||| ||| |||||||||| |||| ||||| ||||||| | |||||||||| | |||||||| GTTAAGCAAG AGTGTGAAAC ACAC-AAATG ACCAAGTGCA TTGGCATATG ATGAAATGAA 626 CCTTCACGTA -AAAGGGGTG AGTAATTATG AAGAAAAAAT GTGCTAATGT TAATGAATGT 153696 | |||||||| ||| | ||| |||||||||| |||| |||| ||||||||| |||||||||| CATTCACGTA GAAATGTGTG AGTAATTATG AAGAGCAAAT ATGCTAATGT TAATGAATGT 686 GGTGACAACA TGATATGAGT CTAATGTAAA AGATGAGATC AATCTTAAA 153745 |||||| | | ||||| || ||||||||| |||||||| | ||||| ||| GGTGACNAAA TGATAACAGG ATAATGTAAA AGATGAGAGC AATCTCAAA 735 hqPGS_C04HBa0031H05.1+_SGN-E327901+ (152986 153531,153562 153745) ******************************************************************************** EST sequence 24 +strand 561 n (File: SGN-E328085+) 1 ATGAACAAGA AAAATAAATA GGAAAAAAAA GAGGGTTGTG GGGGGTTTGA ACCCACAACC 61 CCTTGGCCAA GGGAGAGAAT TTCTAAAGAA AAGGAACTAA AAAGAAATGT TAGTGTTGGG 121 GCTCGATCTA GGGTCCTAAT GTCATGATAA ATAAAAATAA AATCAAGGAA AAATGTAAGT 181 TTTGTCTAAG GGATTCCAAC TTGGGTTCCC TTGCCCAAAT TTCCATATTG ATACATAAGT 241 CATACGTGAA TTAAATGTTC AAAAATAATG CCACCTACTT AGATCGAAAT CAAGATCTTG 301 GCATACATAC AAGATACGTA AGTCTTATAC TACATAATCT TAGGAAGATA CGAGTCACTT 361 AACGAACTAT GAATAAAGCC TCATGGCTTG TATGTATAAA CCCATAACTC TAGCATACAT 421 TTAAAAATAA GTGAACCTAA GAATTGTGTA ATGAAATGGT GTAACCCTAA AAGGGTTAAG 481 TACGAGTGTA AAACACAGTA AATTGACATG TGTATTGGAA TACGATGAAA TGATTATTAT 541 GTAATGAAAT GATAAGACCC T Predicted gene structure (within gDNA segment 150405 to 156486): Exon 1 152986 153456 ( 471 n); cDNA 1 470 ( 470 n); score: 0.816 Intron 1 153457 153573 ( 117 n); Pd: 0.000 (s: 0.90), Pa: 0.061 (s: 0.86) Exon 2 153574 153653 ( 80 n); cDNA 471 548 ( 78 n); score: 0.775 Intron 2 153654 153705 ( 52 n); Pd: 0.913 (s: 0.70), Pa: 0.000 (s: 0) Exon 3 153706 153718 ( 13 n); cDNA 549 561 ( 13 n); score: 0.769 MATCH C04HBa0031H05.1+ SGN-E328085+ 0.810 564 1.005 C PGS_C04HBa0031H05.1+_SGN-E328085+ (152986 153456,153574 153653,153706 153718) Alignment (genomic DNA sequence = upper lines): ATAGTCAAGG AAAATTAAAT AAAAAATAAA AG-GGGTTGT -CGGGGTTTG AACCCACAAC 153043 || ||| | |||| ||||| | ||| ||| || ||||||| |||||||| |||||||||| ATGAACAA-G AAAAATAAAT AGGAAAAAAA AGAGGGTTGT GGGGGGTTTG AACCCACAAC 59 CCCTCGGCCA AGAAAGAGAA TTTACAAAGG ATAGAAATAA AAAGGAAATG ATGATGTTGG 153103 |||| ||||| || |||||| ||| |||| | || || | ||| |||||| | |||||| CCCTTGGCCA AGGGAGAGAA TTTCTAAAGA AAAGGAACTA AAAAGAAATG TTAGTGTTGG 119 TGATCGATCT AGGGTCCCAA TGTCATGTGG AATGAAATTA AATAAAAATA AAAATGTAAT 153163 | ||||||| ||||||| || ||||||| ||| ||| || || || | ||||||||| GGCTCGATCT AGGGTCCTAA TGTCATGATA AATAAAAATA AAATCAAGGA AAAATGTAA- 178 GTGTTGCCTA AGGGATTTGA AACCAGGTTT TCTTGACCCA A-TTCCATAT TGATACATAA 153222 || ||| ||| ||||||| | | |||| |||| || | | |||||||| |||||||||| GTTTTGTCTA AGGGATTCCA ACTTGGGTTC CCTTGCCCAA ATTTCCATAT TGATACATAA 238 GTCATACGTG AATTAAATAT TCAATAATAA TGATGCCTAC TTAGATCGAA ATCAAGATCT 153282 |||||||||| |||||||| | |||| ||||| || ||||| |||||||||| |||||||||| GTCATACGTG AATTAAATGT TCAAAAATAA TGCCACCTAC TTAGATCGAA ATCAAGATCT 298 TGGCTTATAT AAAAGATGCA TAAGTCTTGT ATCATATAAT CTTAGGAAGA TATGAATCAC 153342 |||| || || | ||||| | |||||||| | | | ||||| |||||||||| || || |||| TGGCATACAT ACAAGATACG TAAGTCTTAT ACTACATAAT CTTAGGAAGA TACGAGTCAC 358 TTAAACGAAC TATGAGCGAA GCCTCATGAC TTGTATGTAT AGACCCACAA GTCTAGCATA 153402 || ||||||| ||||| || |||||||| | |||||||||| | ||||| || ||||||||| TT-AACGAAC TATGAATAAA GCCTCATGGC TTGTATGTAT AAACCCATAA CTCTAGCATA 417 CGTTTAAAAA TAAGTGAACC TAAGATGTAT GTAATGAAAT GATGTAACCC TAGAATGGTC 153462 | |||||||| |||||||||| ||||| | | |||||||||| | |||||||| || | CATTTAAAAA TAAGTGAACC TAAGAATTGT GTAATGAAAT GGTGTAACCC TA-A...... 470 AAGTAAGAGT GTGTAACACT CTAAATGGCC AAGTGCATTG GCACATGATG AAATGAACAA 153522 .......... .......... .......... .......... .......... .......... 470 TGAAATGAAC AATAAAACAA TTAAATGAAC AATGAAATGA TGAAACCATA GAAGGGTTAA 153582 ||||||||| .......... .......... .......... .......... .......... .AAGGGTTAA 479 GTAAGAGTGT GAAACACACT AAATGGCCAA GTGTATTGGC ATATGAGGAA ATGAACCTTC 153642 ||| |||||| ||||||| | |||| | || ||||||||| ||| || ||| |||| || GTACGAGTGT AAAACACAGT AAATTGACAT GTGTATTGGA ATACGATGAA ATGATTATT- 538 ACGTAAAAGG GGTGAGTAAT TATGAAGAAA AAATGTGCTA ATGTTAATGA ATGTGGTGAC 153702 | || || | ATGT-AATGA A......... .......... .......... .......... .......... 548 AACATGATAT GAGTCT 153718 |||||| || || ...ATGATAA GACCCT 561 hqPGS_C04HBa0031H05.1+_SGN-E328085+ (152986 153456,153574 153653) ******************************************************************************** EST sequence 9 +strand 654 n (File: SGN-E547448+) 1 CCCACCCCAA CCCCTATCCC CATACACCAG TGGTTATCTT CTTCCCCATC ATTCTAATGA 61 TTTCAAAATT CTTAGTATCA GTGGTTATCT TCTTCCCCCA CCATTCTAAT GGTTTCAAAA 121 TTCTTAGCAT TTTGTTTCAT TTATAAATTT TTCGAAGAGA TTCTTTTCCC CATCTTTCTC 181 TACCTAAAAA ACGAGATGAA GTAAAAAGTT ATAATTAATA AAAGCTGATG AAAAAAAAAT 241 TTGTAGGGTT AAAGATAGAA CTGTACAGGG AGGGGGGGTC GCCATTAATG GAGTTAAAGA 301 AAATGTATGT TTTGTTCCAG TTGAAGGCAG GGAGGTGTTT AGGTTTTACT TTTTTTTTAA 361 ATTTTTTTTA CTTTAAAATA ATTTTTATTT TTTTTACTTT ATAATATAAT GTTTAAATAA 421 TTTTTTGGAT TAAAAAATAA CACATGTCAT TATTTGATTG GTCAAATTGA CATGTCAGCG 481 CGAGTGTATT TCACACATTC TCTATTTTTT GTTTATTCTC GAAAAAATGT TCAAATGATT 541 CAAATTCAGA ATGGTTGAAG TGTTCAATAG GTAGTACGTC TAGTTGAGGT GTCTAAATGA 601 ATAATCGGGA CAAGTTTGAG TGGGCGCATA TGACTTTGGG CTATTTTATT CTAC Predicted gene structure (within gDNA segment 154238 to 157833): Exon 1 155323 155720 ( 398 n); cDNA 1 386 ( 386 n); score: 0.864 Intron 1 155721 155770 ( 50 n); Pd: 0.000 (s: 0.76), Pa: 0.000 (s: 0) Exon 2 155771 155804 ( 34 n); cDNA 387 419 ( 33 n); score: 0.706 Intron 2 155805 156935 (1131 n); Pd: 0.000 (s: 0), Pa: 0.433 (s: 0) Exon 3 156936 156940 ( 5 n); cDNA 420 424 ( 5 n); score: 0.800 MATCH C04HBa0031H05.1+ SGN-E547448+ 0.864 437 0.668 C PGS_C04HBa0031H05.1+_SGN-E547448+ (155323 155720,155771 155804,156936 156940) Alignment (genomic DNA sequence = upper lines): CCCACCCCAA CCCCCATACT CATGCACCAA TGGTTATCTT CTTCCCCCAC CATTATAATG 155382 |||||||||| |||| || | ||| ||||| |||||||||| ||| ||||| |||| ||||| CCCACCCCAA CCCCTATCCC CATACACCAG TGGTTATCTT CTT-CCCCAT CATTCTAATG 59 ATTTCAAAAT TCTTAGCATC AGTGGTTATC TTCTTCCCCC ACCATTCTAA TGGTTTCAAA 155442 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCAAAAT TCTTAGTATC AGTGGTTATC TTCTTCCCCC ACCATTCTAA TGGTTTCAAA 119 TTTCTTAGCT TTTTGTTTCA TTTATAAATT TTTTAGAGAG A-T-TTTCCC CCATCTTTCT 155500 |||||||| |||||||||| |||||||||| ||| |||| | | ||| || |||||||||| ATTCTTAGCA TTTTGTTTCA TTTATAAATT TTTCGAAGAG ATTCTTTTCC CCATCTTTCT 179 CTACCTAAAA AACGAGATGA AGTAAAAAGT TATAATTAAT AAAAAAGCTG ATGAAAAAAA 155560 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||| CTACCTAAAA AACGAGATGA AGTAAAAAGT TATAATTAAT --AAAAGCTG ATGAAAAAAA 237 CAGTTTGTCG GGTTAAAGAT GGAACTGTAC AGGGATGGGA GGGTCGCCAC TAATGGAGTT 155620 | ||||| | |||||||||| ||||||||| ||||| ||| ||||||||| |||||||||| -AATTTGTAG GGTTAAAGAT AGAACTGTAC AGGGA-GGGG GGGTCGCCAT TAATGGAGTT 295 AGAGGGACAT GTATGTTTTA GATTTGAGTT GAAAGCAGGG AAGTGGGTGT TTAAGTTTTA 155680 | | | | || ||||||||| | || |||| ||| |||||| | ||||| ||| |||||| A-AAGAAAAT GTATGTTTT- G-TTCCAGTT GAAGGCAGGG -A---GGTGT TTAGGTTTTA 348 CATTTTTTTT ACTTTATAAT ATAATGTTTA AATAATATTT TGGATTAAAA AATAACACAT 155740 | |||||||| | || | | || | || | |||||| ||| CTTTTTTTTT AAATT-TTTT TTACT-TTAA AATAATTTTT .......... .......... 386 GTCAGTGCGA GTGTATTTCA CACATCCTCT ATTTTTTGTT TATTCTCAAA AAAATGTTCA 155800 ||||||| || || || | |||||| | .......... .......... .......... ATTTTTT-TT ACTTTATAAT ATAATGTTTA 415 AATGGTTCAA ATTCAGAATG GTTGAAGTGT TCAATAGGTA GTATGTTTAG TTGAGGCATC 155860 ||| AATA...... .......... .......... .......... .......... .......... 419 TAAATAAATA ATCGGGACAA GTTTGAGTGG CCGCATATGA CTTTGGCCTA AAATATTTCT 155920 .......... .......... .......... .......... .......... .......... 419 TTCATTTGAT GATCTTAATG TTAGATGGTT GATGGTGAAC AATTATGAAT TTAATAGAAT 155980 .......... .......... .......... .......... .......... .......... 419 GATTAGTATG TATGCTAAGA AACAAAAAGT TTCAAATTTT CCGCTAAAAT TAACCTAGAT 156040 .......... .......... .......... .......... .......... .......... 419 GAAGTAAGAA TGACGTAAGT AGGCTTGTAT GCGACCTCTG AGAGATCAAC GATGCCAGTC 156100 .......... .......... .......... .......... .......... .......... 419 TCGTCTGGGG TCTAGATTTC GATCGTGAAA GTTATGGGGG AAAGTTCAGA TAACTCACAG 156160 .......... .......... .......... .......... .......... .......... 419 CACCCATAAA CCATAAAGCC ACCATGGGTA GAATAGGATC ATATTTTTTA GATGATTCCT 156220 .......... .......... .......... .......... .......... .......... 419 TTAGTGTTTT TAGCATATAT TTGTGGATCC ACTTAGTAGT TCAGAATCTA TACAGATGGC 156280 .......... .......... .......... .......... .......... .......... 419 AAGGTATAGG ATTGCCCTGG CAGCGTGGGG TAAAATGTTG TATCATATAG ATATCTCTTA 156340 .......... .......... .......... .......... .......... .......... 419 AGTGATGCTT GCTGGTTAGA GAAACTCCCA CAGAAGTTAA ATGTATTTTA TATGAACAAT 156400 .......... .......... .......... .......... .......... .......... 419 TATTTGTATT TTACATATAT CTCAGAGTTA TATGATATTT TGCATATAGA GAGTTGACAA 156460 .......... .......... .......... .......... .......... .......... 419 CATGTTTTAA ACAACTTTTC CTTATATTGC ACTTGTCTTA AATTAAATTG CTTTATATTG 156520 .......... .......... .......... .......... .......... .......... 419 ACATGAGTTT AGTCTTGTGG AGTTGTGTTT AGCCAGGCGA GTTCTCCAGA TTTTCCTTTC 156580 .......... .......... .......... .......... .......... .......... 419 AAGCATACCT ATATTTCATC ATTCCAACTT GCATACTCGT ACATTTAGTG TACTGATGCC 156640 .......... .......... .......... .......... .......... .......... 419 AGTTGGCCTG CATAATATTA TGATGTAGTC GCAGATAAAT AAGATCGGCA TCTGGCGCAC 156700 .......... .......... .......... .......... .......... .......... 419 CGTTGATTCA GTGAGTAGCT CAAAGTTAGT TAGTGAGCCT CCTTACAATA TGGAGGACAT 156760 .......... .......... .......... .......... .......... .......... 419 ATTTTATCAT TTGATTTCTA GTTTTAAGTT GTTAGGATGA TTGGGGGTCC TGTCCCAACA 156820 .......... .......... .......... .......... .......... .......... 419 CTTGTCTTTG TTTTAGAAGC TTCATAGATA GATAATAGTA CTTCTTTAGT CTTATTCATT 156880 .......... .......... .......... .......... .......... .......... 419 TCAGTTGTAA ACATTTAAGA CATGAGTTGC CATTTTTGCT AAGTTATTTT CATAGGTTTT 156940 |||| .......... .......... .......... .......... .......... .....ATTTT 424 hqPGS_C04HBa0031H05.1+_SGN-E547448+ (155323 155720,155771 155804) Total number of EST alignments reported: 97 ________________________________________________________________________________ Predicted gene locations (23) in segment 1 to 164164: PGL 1 (+ strand): 2156 2715 AGS-1 (2156 2715) SCR (e 0.895) Exon 1 2156 2715 ( 560 n); score: 0.895 PGS (2156 2715) SGN-E331029+ 3-phase translation of AGS-1 (+strand): . . . . . . 2156 AAAAACTCACACCACTACTAGTATTTTTGAACTACTACATGTTGATATTTCGGGTCCCTA K N S H H Y - Y F - T T T C - Y F G S L K T H T T T S I F E L L H V D I S G P Y K L T P L L V F L N Y Y M L I F R V P . . . . . . 2216 TCAAACACCAACTCATGACAACTTTAAATACTTCATTACCTTACTAGATGACTTTAGCAA S N T N S - Q L - I L H Y L T R - L - Q Q T P T H D N F K Y F I T L L D D F S K I K H Q L M T T L N T S L P Y - M T L A . . . . . . 2276 ATCTACTTGGACACATCTTCTAAGTAGTAAAAGCAATGCTTTCCATATCCTTAAAGCTTT I Y L D T S S K - - K Q C F P Y P - S F S T W T H L L S S K S N A F H I L K A F N L L G H I F - V V K A M L S I S L K L . . . . . . 2336 TGTACTCATGGTTGAGAACCAGTTCAACACCACTATTAAAACCATCAGATCAGATAATGG C T H G - E P V Q H H Y - N H Q I R - W V L M V E N Q F N T T I K T I R S D N G L Y S W L R T S S T P L L K P S D Q I M . . . . . . 2396 ATTGGAATTCACTAGCAATGAATCCACTTTAATTTTCCAAGCCAAAGTTATTATTCATCA I G I H - Q - I H F N F P S Q S Y Y S S L E F T S N E S T L I F Q A K V I I H Q D W N S L A M N P L - F S K P K L L F I . . . . . . 2456 GAAATCATGTCCTTATACTCCTCAACAAAATGGAGTGGTAGAAAGAAAGCACAAATATAT E I M S L Y S S T K W S G R K K A Q I Y K S C P Y T P Q Q N G V V E R K H K Y I R N H V L I L L N K M E W - K E S T N I . . . . . . 2516 TCTGAAAACAGCAAGGGCTCTTCTTTTTCAATCTAAACTCCCAGTGAGATATTGGGGTGA S E N S K G S S F S I - T P S E I L G - L K T A R A L L F Q S K L P V R Y W G E F - K Q Q G L F F F N L N S Q - D I G V . . . . . . 2576 ATGTATACTTACTTCCACATATCTTATAAATAGAATACCTTCTTCAACTCTCCACAATAA M Y T Y F H I S Y K - N T F F N S P Q - C I L T S T Y L I N R I P S S T L H N K N V Y L L P H I L - I E Y L L Q L S T I . . . . . . 2636 AACTCCTTATGAGATTTTATATAAACATAAACCTCCATACTCACACCTAAAGAGTTTTGG N S L - D F I - T - T S I L T P K E F W T P Y E I L Y K H K P P Y S H L K S F G K L L M R F Y I N I N L H T H T - R V L . . 2696 ATGTTTATGTTATCCTACTA M F M L S Y C L C Y P T D V Y V I L L Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1+_PGL-1_AGS-1_PPS_1 (2157 2714) (frame '2'; 558 bp, 186 residues) 1 KTHTTTSIFE LLHVDISGPY QTPTHDNFKY FITLLDDFSK STWTHLLSSK SNAFHILKAF 61 VLMVENQFNT TIKTIRSDNG LEFTSNESTL IFQAKVIIHQ KSCPYTPQQN GVVERKHKYI 121 LKTARALLFQ SKLPVRYWGE CILTSTYLIN RIPSSTLHNK TPYEILYKHK PPYSHLKSFG 181 CLCYPT 3-phase translation of AGS-1 (-strand): . . . . . . 2715 TAGTAGGATAACATAAACATCCAAAACTCTTTAGGTGTGAGTATGGAGGTTTATGTTTAT - - D N I N I Q N S L G V S M E V Y V Y S R I T - T S K T L - V - V W R F M F I V G - H K H P K L F R C E Y G G L C L . . . . . . 2655 ATAAAATCTCATAAGGAGTTTTATTGTGGAGAGTTGAAGAAGGTATTCTATTTATAAGAT I K S H K E F Y C G E L K K V F Y L - D - N L I R S F I V E S - R R Y S I Y K I Y K I S - G V L L W R V E E G I L F I R . . . . . . 2595 ATGTGGAAGTAAGTATACATTCACCCCAATATCTCACTGGGAGTTTAGATTGAAAAAGAA M W K - V Y I H P N I S L G V - I E K E C G S K Y T F T P I S H W E F R L K K K Y V E V S I H S P Q Y L T G S L D - K R . . . . . . 2535 GAGCCCTTGCTGTTTTCAGAATATATTTGTGCTTTCTTTCTACCACTCCATTTTGTTGAG E P L L F S E Y I C A F F L P L H F V E S P C C F Q N I F V L S F Y H S I L L R R A L A V F R I Y L C F L S T T P F C - . . . . . . 2475 GAGTATAAGGACATGATTTCTGATGAATAATAACTTTGGCTTGGAAAATTAAAGTGGATT E Y K D M I S D E - - L W L G K L K W I S I R T - F L M N N N F G L E N - S G F G V - G H D F - - I I T L A W K I K V D . . . . . . 2415 CATTGCTAGTGAATTCCAATCCATTATCTGATCTGATGGTTTTAATAGTGGTGTTGAACT H C - - I P I H Y L I - W F - - W C - T I A S E F Q S I I - S D G F N S G V E L S L L V N S N P L S D L M V L I V V L N . . . . . . 2355 GGTTCTCAACCATGAGTACAAAAGCTTTAAGGATATGGAAAGCATTGCTTTTACTACTTA G S Q P - V Q K L - G Y G K H C F Y Y L V L N H E Y K S F K D M E S I A F T T - W F S T M S T K A L R I W K A L L L L L . . . . . . 2295 GAAGATGTGTCCAAGTAGATTTGCTAAAGTCATCTAGTAAGGTAATGAAGTATTTAAAGT E D V S K - I C - S H L V R - - S I - S K M C P S R F A K V I - - G N E V F K V R R C V Q V D L L K S S S K V M K Y L K . . . . . . 2235 TGTCATGAGTTGGTGTTTGATAGGGACCCGAAATATCAACATGTAGTAGTTCAAAAATAC C H E L V F D R D P K Y Q H V V V Q K Y V M S W C L I G T R N I N M - - F K N T L S - V G V - - G P E I S T C S S S K I . . 2175 TAGTAGTGGTGTGAGTTTTT - - W C E F S S G V S F L V V V - V F Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1-_PGL-1_AGS-1_PPS_1 (2449 2228) (frame '0'; 219 bp, 73 residues) 1 IITLAWKIKV DSLLVNSNPL SDLMVLIVVL NWFSTMSTKA LRIWKALLLL LRRCVQVDLL 61 KSSSKVMKYL KLS- PGL 2 (+ strand): 8932 9258 AGS-1 (8932 9258) SCR (e 0.835) Exon 1 8932 9258 ( 327 n); score: 0.835 PGS (8932 9258) SGN-E332350+ 3-phase translation of AGS-1 (+strand): . . . . . . 8932 ACAAAATTAATTGAGGGTTCTAAAAGAGAGGCTTATTACTACCTGGAGGAACATTATTGG T K L I E G S K R E A Y Y Y L E E H Y W Q N - L R V L K E R L I T T W R N I I G K I N - G F - K R G L L L P G G T L L . . . . . . 8992 TACTCATAATGCATTGTATTGTAGTAAGTCTCATAGAAACTTGTTAAATTTCAAGGTTAA Y S - C I V L - - V S - K L V K F Q G - T H N A L Y C S K S H R N L L N F K V N V L I M H C I V V S L I E T C - I S R L . . . . . . 9052 TGCCAAAATGGCTATCATGTTGAGACTCTGAATGAAGAAAAGGTTGAACACTTTTATATT C Q N G Y H V E T L N E E K V E H F Y I A K M A I M L R L - M K K R L N T F I L M P K W L S C - D S E - R K G - T L L Y . . . . . . 9112 ACTACAATAAATGCTGAGAAAAAAATTGTGCATGAAAAATTATCTGCACTTTCTTCTGGG T T I N A E K K I V H E K L S A L S S G L Q - M L R K K L C M K N Y L H F L L G Y Y N K C - E K N C A - K I I C T F F W . . . . . . 9172 TTGTACTATACAAATACTGATACAATTGAATTACATGTCGTAGTAAATAAAGTTTTACTG L Y Y T N T D T I E L H V V V N K V L L C T I Q I L I Q L N Y M S - - I K F Y - V V L Y K Y - Y N - I T C R S K - S F T . . . 9232 ATTCTAATGATTTTATAATTAGGCATG I L M I L - L G M F - - F Y N - A D S N D F I I R H Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1+_PGL-2_AGS-1_PPS_1 (9052 9249) (frame '1'; 195 bp, 65 residues) 1 CQNGYHVETL NEEKVEHFYI TTINAEKKIV HEKLSALSSG LYYTNTDTIE LHVVVNKVLL 61 ILMIL- 3-phase translation of AGS-1 (-strand): . . . . . . 9258 CATGCCTAATTATAAAATCATTAGAATCAGTAAAACTTTATTTACTACGACATGTAATTC H A - L - N H - N Q - N F I Y Y D M - F M P N Y K I I R I S K T L F T T T C N S C L I I K S L E S V K L Y L L R H V I . . . . . . 9198 AATTGTATCAGTATTTGTATAGTACAACCCAGAAGAAAGTGCAGATAATTTTTCATGCAC N C I S I C I V Q P R R K C R - F F M H I V S V F V - Y N P E E S A D N F S C T Q L Y Q Y L Y S T T Q K K V Q I I F H A . . . . . . 9138 AATTTTTTTCTCAGCATTTATTGTAGTAATATAAAAGTGTTCAACCTTTTCTTCATTCAG N F F L S I Y C S N I K V F N L F F I Q I F F S A F I V V I - K C S T F S S F R Q F F S Q H L L - - Y K S V Q P F L H S . . . . . . 9078 AGTCTCAACATGATAGCCATTTTGGCATTAACCTTGAAATTTAACAAGTTTCTATGAGAC S L N M I A I L A L T L K F N K F L - D V S T - - P F W H - P - N L T S F Y E T E S Q H D S H F G I N L E I - Q V S M R . . . . . . 9018 TTACTACAATACAATGCATTATGAGTACCAATAATGTTCCTCCAGGTAGTAATAAGCCTC L L Q Y N A L - V P I M F L Q V V I S L Y Y N T M H Y E Y Q - C S S R - - - A S L T T I Q C I M S T N N V P P G S N K P . . . 8958 TCTTTTAGAACCCTCAATTAATTTTGT S F R T L N - F C L L E P S I N F L F - N P Q L I L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 3 (- strand): 14493 13250 AGS-1 (14493 14458,13933 13250) SCR (e 1.000 d 0.985 a 0.998,e 0.994) Exon 1 14493 14458 ( 36 n); score: 1.000 Intron 1 14457 13934 ( 524 n); Pd: 0.985 Pa: 0.998 Exon 2 13933 13250 ( 684 n); score: 0.994 PGS (14493 14458,13933 13250) SGN-E542175- PGS (13922 13250) SGN-E542177- 3-phase translation of AGS-1 (-strand): . . . . : . . 14493 GGAAGTCAATATGATGTTACTATACTCATTTGGAAG : GATCCAAAGCTAGGGAATTGGTGG G S Q Y D V T I L I W K : D P K L G N W W E V N M M L L Y S F G R : I Q S - G I G G K S I - C Y Y T H L E : G S K A R E L V . . . . . . 13909 ATGGTGTTTGGTGACAACACACTAGTAGGTTATTGGCCTGCTGAGTTATTTACACACTTG M V F G D N T L V G Y W P A E L F T H L W C L V T T H - - V I G L L S Y L H T W D G V W - Q H T S R L L A C - V I Y T L . . . . . . 13849 GCGGAGCGAGCTACAATGGTGGAGTGGGGCGGAGAGATCGTAAATTCACGGGCCAATGGA A E R A T M V E W G G E I V N S R A N G R S E L Q W W S G A E R S - I H G P M E G G A S Y N G G V G R R D R K F T G Q W . . . . . . 13789 GAACATACGTCTACACAAATGGGCTCAGGCCATTTTGGTGATGATGGATTTAGAAAAGCC E H T S T Q M G S G H F G D D G F R K A N I R L H K W A Q A I L V M M D L E K P R T Y V Y T N G L R P F W - - W I - K S . . . . . . 13729 AGTTATTTCAGAAATCTTGAAATTGTGGACTCTGATAACAGCCTAAGTTCAGCCCAAGAT S Y F R N L E I V D S D N S L S S A Q D V I S E I L K L W T L I T A - V Q P K I Q L F Q K S - N C G L - - Q P K F S P R . . . . . . 13669 ATATCAATCTTGGCTGAGAATACAAATTGCTATAACATCAAAAATGCTTATAGCACTGAA I S I L A E N T N C Y N I K N A Y S T E Y Q S W L R I Q I A I T S K M L I A L N Y I N L G - E Y K L L - H Q K C L - H - . . . . . . 13609 TGGGGTACACATTTCTATTATGGTGGACCTGGTAGAAATCCACAATGCAACTAATATAAT W G T H F Y Y G G P G R N P Q C N - Y N G V H I S I M V D L V E I H N A T N I M M G Y T F L L W W T W - K S T M Q L I - . . . . . . 13549 GATGATGAGGCAAAGTCTCCTTTAGCTAGTTATCACCAAATTTGTTCTTTTATTATTTTT D D E A K S P L A S Y H Q I C S F I I F M M R Q S L L - L V I T K F V L L L F L - - - G K V S F S - L S P N L F F Y Y F . . . . . . 13489 ATTTACATCTTTTAATGCTATTTCCAACTTTGTTTATGCTGATTAATTACACATTGTTTT I Y I F - C Y F Q L C L C - L I T H C F F T S F N A I S N F V Y A D - L H I V F Y L H L L M L F P T L F M L I N Y T L F . . . . . . 13429 TTCTTCTTGTGTCTATGTTTTGTTTTGAGGGCGGAAAATGTATGTATTATTAGTTAAATA F F L C L C F V L R A E N V C I I S - I S S C V Y V L F - G R K M Y V L L V K - F L L V S M F C F E G G K C M Y Y - L N . . . . . . 13369 AGACAAATAGCATTAAACAGGGTAAGGAAATAGCAAATATTTAGTTGTAATGGCTACTGG R Q I A L N R V R K - Q I F S C N G Y W D K - H - T G - G N S K Y L V V M A T G K T N S I K Q G K E I A N I - L - W L L . . . . . . 13309 TACAAAATTTGTGATCTTATGTTTCTGAATCTTATGAAATGAATCAATTTGTTTTTACTA Y K I C D L M F L N L M K - I N L F L L T K F V I L C F - I L - N E S I C F Y V Q N L - S Y V S E S Y E M N Q F V F T Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1-_PGL-3_AGS-1_PPS_1 (14493 14458,13933 13556) (frame '1'; 411 bp, 137 residues) 1 GSQYDVTILI WKDPKLGNWW MVFGDNTLVG YWPAELFTHL AERATMVEWG GEIVNSRANG 61 EHTSTQMGSG HFGDDGFRKA SYFRNLEIVD SDNSLSSAQD ISILAENTNC YNIKNAYSTE 121 WGTHFYYGGP GRNPQCN- PGL 4 (- strand): 22942 21534 AGS-1 (22942 22462,22384 22298,21744 21534) SCR (e 1.000 d 1.000 a 0.990,e 1.000 d 1.000 a 0.999,e 0.995) Exon 1 22942 22462 ( 481 n); score: 1.000 Intron 1 22461 22385 ( 77 n); Pd: 1.000 Pa: 0.990 Exon 2 22384 22298 ( 87 n); score: 1.000 Intron 2 22297 21745 ( 553 n); Pd: 1.000 Pa: 0.999 Exon 3 21744 21534 ( 211 n); score: 0.995 PGS (22942 22462,22384 22298,21744 21534) SGN-E542178+ PGS (22942 22462,22384 22298,21744 21562) SGN-E542179+ PGS (22941 22464) SGN-E300061+ 3-phase translation of AGS-1 (-strand): . . . . . . 22942 ATATTGAAGGAGAGATTAAGTAAGGTGTAAACCAATAATAAAAGAAAGTGGGGATAGGTT I L K E R L S K V - T N N K R K W G - V Y - R R D - V R C K P I I K E S G D R F I E G E I K - G V N Q - - K K V G I G . . . . . . 22882 TTATTACTCTATTTTTCTGCCCCATAGTATTAACTCCCTTTTCCATCATTGTAAAAACAA L L L Y F S A P - Y - L P F P S L - K Q Y Y S I F L P H S I N S L F H H C K N N F I T L F F C P I V L T P F S I I V K T . . . . . . 22822 TGTATTGACTGTCCATTTTTATTTATATGATGCTGCTCTCCTCTCAATCATCATGAATCT C I D C P F L F I - C C S P L N H H E S V L T V H F Y L Y D A A L L S I I M N L M Y - L S I F I Y M M L L S S Q S S - I . . . . . . 22762 CAACCACCTCTTTTCCTATGCATTTACTACATTTATGTGTTTAAAACACTTTTCTTTTTT Q P P L F L C I Y Y I Y V F K T L F F F N H L F S Y A F T T F M C L K H F S F F S T T S F P M H L L H L C V - N T F L F . . . . . . 22702 TCTACTAATGGTGCTCTAGTCTCTTTTTTTCTCTTTCCTTTTCTTTGGCACTGAATGAAA S T N G A L V S F F L F P F L W H - M K L L M V L - S L F F S F L F F G T E - N F Y - W C S S L F F S L S F S L A L N E . . . . . . 22642 TATGGTTAAAATTAAGAAGAAAGATCAAAGTTTTCTAGTCTTGACTTTGTGTTTGTTCTT Y G - N - E E R S K F S S L D F V F V L M V K I K K K D Q S F L V L T L C L F F I W L K L R R K I K V F - S - L C V C S . . . . . . 22582 TGTTATGTGTGAAGCACATAATTTGAACTACACAAAGTATAAACAAGTTAGCAATATGAG C Y V - S T - F E L H K V - T S - Q Y E V M C E A H N L N Y T K Y K Q V S N M R L L C V K H I I - T T Q S I N K L A I - . . . . . . 22522 ACTTGAAAGGATTCAAAGGCATTTGGATAGAATCAACAAGCCTCCTCTCTTCACTATTCA T - K D S K A F G - N Q Q A S S L H Y S L E R I Q R H L D R I N K P P L F T I Q D L K G F K G I W I E S T S L L S S L F . : . . . . . 22462 G : AGCCCGGATGGAGATATCATAGATTGTGTTCATAAAAGAAAACAACCAGCTTTCGATCA : E P G W R Y H R L C S - K K T T S F R S : S P D G D I I D C V H K R K Q P A F D H R : A R M E I S - I V F I K E N N Q L S I . . . : . . . 22325 TCCTTTGCTCAAGAATCACAAGATTCAG : AAGATTCCACCAGAGATTCCAAAACTGAAAAC S F A Q E S Q D S : E D S T R D S K T E N P L L K N H K I Q : K I P P E I P K L K T I L C S R I T R F R : R F H Q R F Q N - K . . . . . . 21712 GTCTGTGAAAACAGACGCGATGATGAGTAGAGACGTTGTAAGTAACAATAGCAAAAGTGC V C E N R R D D E - R R C K - Q - Q K C S V K T D A M M S R D V V S N N S K S A R L - K Q T R - - V E T L - V T I A K V . . . . . . 21652 AGTGATAGATTGGCAATTATGGCACCAAAACGGAACGCGGTGCCCTGCAGGCACTGTCCC S D R L A I M A P K R N A V P C R H C P V I D W Q L W H Q N G T R C P A G T V P Q - - I G N Y G T K T E R G A L Q A L S . . . . . . 21592 GATACGACGGAGTGAGGTTCATGATGTGCTTAGAGCAAAGTCATTGTATGATTTTGGTA D T T E - G S - C A - S K V I V - F W I R R S E V H D V L R A K S L Y D F G R Y D G V R F M M C L E Q S H C M I L V Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1-_PGL-4_AGS-1_PPS_1 (22644 22462,22384 22298,21744 21535) (frame '2'; 480 bp, 160 residues) 1 NMVKIKKKDQ SFLVLTLCLF FVMCEAHNLN YTKYKQVSNM RLERIQRHLD RINKPPLFTI 61 QSPDGDIIDC VHKRKQPAFD HPLLKNHKIQ KIPPEIPKLK TSVKTDAMMS RDVVSNNSKS 121 AVIDWQLWHQ NGTRCPAGTV PIRRSEVHDV LRAKSLYDFG >C04HBa0031H05.1-_PGL-4_AGS-1_PPS_2 (22923 22684) (frame '2'; 237 bp, 79 residues) 1 VRCKPIIKES GDRFYYSIFL PHSINSLFHH CKNNVLTVHF YLYDAALLSI IMNLNHLFSY 61 AFTTFMCLKH FSFFLLMVL- PGL 5 (- strand): 46286 41791 AGS-1 (46286 46254,46185 46160,44623 44371,42983 42935,41823 41791) SCR (e 0.818 d 0.000 a 0.631,e 0.615 d 0.000 a 0.414,e 0.719 d 0.000 a 0.783,e 0.582 d 0.000 a 0.000,e 0.758) Exon 1 46286 46254 ( 33 n); score: 0.818 Intron 1 46253 46186 ( 68 n); Pd: 0.000 Pa: 0.631 Exon 2 46185 46160 ( 26 n); score: 0.615 Intron 2 46159 44624 (1536 n); Pd: 0.000 Pa: 0.414 Exon 3 44623 44371 ( 253 n); score: 0.719 Intron 3 44370 42984 (1387 n); Pd: 0.000 Pa: 0.783 Exon 4 42983 42935 ( 49 n); score: 0.582 Intron 4 42934 41824 (1111 n); Pd: 0.000 Pa: 0.000 Exon 5 41823 41791 ( 33 n); score: 0.758 PGS (44500 44371,42983 42935,41823 41791) SGN-E203450- PGS (46286 46254,46185 46160,44623 44370) SGN-E395418- PGS (44620 44370) SGN-E206062- 3-phase translation of AGS-1 (-strand): . . . . : . . : 46286 TAAAACATTATTGACAATAACGTTTTATACTTA : ACACGTGTTATCCAGTCACGGGCTCT : G - N I I D N N V L Y L : T R V I Q S R A L : K T L L T I T F Y T - : H V L S S H G L : - K H Y - Q - R F I L : N T C Y P V T G S : . . . . . . 44622 AGTAAATTATATATGCTTAAAACGTTATTCTCAATAATGTATTAGAGTTAAAACGTAATT S K L Y M L K T L F S I M Y - S - N V I V N Y I C L K R Y S Q - C I R V K T - F E - I I Y A - N V I L N N V L E L K R N . . . . . . 44562 TCCACTTACGTATTATTATTTAACGTTGTTAGCAGTCCGTCCCTTTTCTCATTAAATTTT S T Y V L L F N V V S S P S L F S L N F P L T Y Y Y L T L L A V R P F S H - I F F H L R I I I - R C - Q S V P F L I K F . . . . . . 44502 TTAAAATAAATAAAGTATAAAACATTACTGTGAACCACGTTTATACTAGTTTTGTAAAAA L K - I K Y K T L L - T T F I L V L - K - N K - S I K H Y C E P R L Y - F C K K F K I N K V - N I T V N H V Y T S F V K . . . . . . 44442 AAATTAAAAACATACTATTTTTGAGAATTGATTTATAGAATGACTTATTTTGGTTAAAAA K L K T Y Y F - E L I Y R M T Y F G - K N - K H T I F E N - F I E - L I L V K N K I K N I L F L R I D L - N D L F W L K . . : . . . . 44382 CTCGTGCATTTT : GATGATGGATAATAAAATCAACAACTATCATTAACAAGGTTGTACAAG L V H F : D D G - - N Q Q L S L T R L Y K S C I L : M M D N K I N N Y H - Q G C T R T R A F : - - W I I K S T T I I N K V V Q . : . . . 42935 G : TAAATCTAACTAAAACAACTTTGAATCTCTATT : V N L T K T T L N L Y : - I - L K Q L - I S I G : K S N - N N F E S L Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (42692 42393) SCR (e 0.853) Exon 1 42692 42393 ( 300 n); score: 0.853 PGS (42692 42393) SGN-E379333+ 3-phase translation of AGS-2 (-strand): . . . . . . 42692 ACTTTTCTCTCAAAAAGTCACTCAACTTTCAATTTTCACTCAAAAGTCACTCAACTATGC T F L S K S H S T F N F H S K V T Q L C L F S Q K V T Q L S I F T Q K S L N Y A F S L K K S L N F Q F S L K S H S T M . . . . . . 42632 ACTTCTTTCTCAGAAAGTCACTCAACTTTGAATTTTAACTCAAAAGTCACTCAACTATCT T S F S E S H S T L N F N S K V T Q L S L L S Q K V T Q L - I L T Q K S L N Y L H F F L R K S L N F E F - L K S H S T I . . . . . . 42572 ACTCTTTCCTAAAAAAGTCACTCAATCTATTAAAATATTTTTTTAATTAAAATTTATTAA T L S - K S H S I Y - N I F L I K I Y - L F P K K V T Q S I K I F F - L K F I N Y S F L K K S L N L L K Y F F N - N L L . . . . . . 42512 TATTAATTATTTATATAACAAACCAAAATTTTAAAAAAATAAAAATACCACTTAAACCAT Y - L F I - Q T K I L K K - K Y H L N H I N Y L Y N K P K F - K N K N T T - T I I L I I Y I T N Q N F K K I K I P L K P . . . . . . 42452 TTAGTGATCCACCCACCTAACCCGATCCATTAAAAAATATAATATGACCCATTTTATTTT L V I H P P N P I H - K I - Y D P F Y F - - S T H L T R S I K K Y N M T H F I F S D P P T - P D P L K N I I - P I L F Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (+strand): . . . . . . 42393 AAAATAAAATGGGTCATATTATATTTTTTAATGGATCGGGTTAGGTGGGTGGATCACTAA K I K W V I L Y F L M D R V R W V D H - K - N G S Y Y I F - W I G L G G W I T K N K M G H I I F F N G S G - V G G S L . . . . . . 42453 ATGGTTTAAGTGGTATTTTTATTTTTTTAAAATTTTGGTTTGTTATATAAATAATTAATA M V - V V F L F F - N F G L L Y K - L I W F K W Y F Y F F K I L V C Y I N N - Y N G L S G I F I F L K F W F V I - I I N . . . . . . 42513 TTAATAAATTTTAATTAAAAAAATATTTTAATAGATTGAGTGACTTTTTTAGGAAAGAGT L I N F N - K N I L I D - V T F L G K S - - I L I K K I F - - I E - L F - E R V I N K F - L K K Y F N R L S D F F R K E . . . . . . 42573 AGATAGTTGAGTGACTTTTGAGTTAAAATTCAAAGTTGAGTGACTTTCTGAGAAAGAAGT R - L S D F - V K I Q S - V T F - E R S D S - V T F E L K F K V E - L S E K E V - I V E - L L S - N S K L S D F L R K K . . . . . . 42633 GCATAGTTGAGTGACTTTTGAGTGAAAATTGAAAGTTGAGTGACTTTTTGAGAGAAAAGT A - L S D F - V K I E S - V T F - E K S H S - V T F E - K L K V E - L F E R K C I V E - L L S E N - K L S D F L R E K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (45209 45183,45038 44938,44799 44662) SCR (e 0.630 d 0.834 a 0.000,e 0.881 d 0.508 a 0.000,e 0.877) Exon 1 45209 45183 ( 27 n); score: 0.630 Intron 1 45182 45039 ( 144 n); Pd: 0.834 Pa: 0.000 Exon 2 45038 44938 ( 101 n); score: 0.881 Intron 2 44937 44800 ( 138 n); Pd: 0.508 Pa: 0.000 Exon 3 44799 44662 ( 138 n); score: 0.877 PGS (45209 45183,45038 44938,44799 44662) SGN-E254360- PGS (45209 45183,45038 44938,44799 44662) SGN-E256299- PGS (45040 44938,44799 44662) SGN-E375458+ PGS (45040 44938,44799 44662) SGN-E263032- PGS (45040 44938,44799 44662) SGN-E375288- PGS (45040 44938,44799 44662) SGN-E375287+ PGS (45025 44938,44799 44662) SGN-E260344- PGS (45040 44938,44799 44679) SGN-E252552- 3-phase translation of AGS-3 (-strand): . . . : . . . 45209 TCAACTTCACATGAGCACAAGGAAGCA : GAAATACAAAAAGCTCTTCTTTATCAAAGTTTT S T S H E H K E A : E I Q K A L L Y Q S F Q L H M S T R K Q : K Y K K L F F I K V L N F T - A Q G S : R N T K S S S L S K F . . . . . . 45005 GTTTACCTTTTTAAAGCAAATCTGCAGACGTTTTCAAAGTTTCGAAATTTCACCTCCAAT V Y L F K A N L Q T F S K F R N F T S N F T F L K Q I C R R F Q S F E I S P P I C L P F - S K S A D V F K V S K F H L Q . : . . . . . 44945 CTTTTGCA : GATATAGCATTCATCAACTTCATTGTGCCTTTGGAGCGAGATTTGATGCTAG L L Q : I - H S S T S L C L W S E I - C - F C : R Y S I H Q L H C A F G A R F D A S S F A : D I A F I N F I V P L E R D L M L . . . . . . 44747 TTCTCTGCTTAATTTTATCCCCTGTAACTTGAAGGTAGGTTTGGAGAATGAAGTGGGTTT F S A - F Y P L - L E G R F G E - S G F S L L N F I P C N L K V G L E N E V G F V L C L I L S P V T - R - V W R M K W V . . . 44687 TCTTGGAGGATTTTCTTCCCTAATTT S W R I F F P N L G G F S S L I F L E D F L P - F Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1-_PGL-5_AGS-3_PPS_1 (45208 45183,45038 44938,44799 44663) (frame '2'; 264 bp, 88 residues) 1 QLHMSTRKQK YKKLFFIKVL FTFLKQICRR FQSFEISPPI FCRYSIHQLH CAFGARFDAS 61 SLLNFIPCNL KVGLENEVGF LGGFSSLI PGL 6 (+ strand): 46841 47514 AGS-1 (46841 46866,47210 47514) SCR (e 0.769 d 0.000 a 0.000,e 0.831) Exon 1 46841 46866 ( 26 n); score: 0.769 Intron 1 46867 47209 ( 343 n); Pd: 0.000 Pa: 0.000 Exon 2 47210 47514 ( 305 n); score: 0.831 PGS (46841 46866,47210 47514) SGN-E540411+ 3-phase translation of AGS-1 (+strand): . . . : . . . 46841 TGAATTAGAATTAAATGAAATTAAAG : GGAAAATGCACAAGTACCCCCTCAATCAATGCCT - I R I K - N - R : E N A Q V P P Q S M P E L E L N E I K : G K M H K Y P L N Q C L N - N - M K L K : G K C T S T P S I N A . . . . . . 47244 GAAATTTCAGAGACACACTTATACTATACTAAGGTCCAATTACCCCCTTGAACTTATTTT E I S E T H L Y Y T K V Q L P P - T Y F K F Q R H T Y T I L R S N Y P L E L I L - N F R D T L I L Y - G P I T P L N L F . . . . . . 47304 ATAAATAATTTTTTACTCCTTTTCCGCCTATGTGACGCTATTTTAAAAAAATGTCACCAC I N N F L L L F R L C D A I L K K C H H - I I F Y S F S A Y V T L F - K N V T T Y K - F F T P F P P M - R Y F K K M S P . . . . . . 47364 ACGCTGAGCCCACAAGATAGTGCCACGTAGAATGAATAAGGATAGAAAATATTTATAAAA T L S P Q D S A T - N E - G - K I F I K R - A H K I V P R R M N K D R K Y L - N H A E P T R - C H V E - I R I E N I Y K . . . . . . 47424 TAAGCTTAGGGGGTAATAGGACCTTAATATAGTATAAATGTGTCTCTGGGATTTCGGACA - A - G V I G P - Y S I N V S L G F R T K L R G - - D L N I V - M C L W D F G H I S L G G N R T L I - Y K C V S G I S D . . . . 47484 TAGATTGAGGGGGTACTTGTACATTATCCCA - I E G V L V H Y P R L R G Y L Y I I P I D - G G T C T L S Maximal non-overlapping open reading frames (>= 64 codons): none PGL 7 (+ strand): 49114 52387 AGS-1 (49114 49134,51806 52387) SCR (e 0.762 d 0.681 a 0.000,e 0.928) Exon 1 49114 49134 ( 21 n); score: 0.762 Intron 1 49135 51805 (2671 n); Pd: 0.681 Pa: 0.000 Exon 2 51806 52387 ( 582 n); score: 0.928 PGS (49114 49134,51806 51981) SGN-E577955+ PGS (51820 51900) SGN-E326015+ PGS (51822 52117) SGN-E379905+ PGS (51822 51945) SGN-E201144+ PGS (52011 52387) SGN-E380017- 3-phase translation of AGS-1 (+strand): . . . : . . . 49114 CAATCGATCACTAATCCATTG : CTTTGATGGAGATATATGTTGGGAACGACAAGGCACTAA Q S I T N P L : L - W R Y M L G T T R H - N R S L I H C : F D G D I C W E R Q G T N I D H - S I : A L M E I Y V G N D K A L . . . . . . 51845 CAAAGAATGCCTGACAGGATAACAACGGAAGAATACCCAAGTCTATACTTTCCCTTCTCG Q R M P D R I T T E E Y P S L Y F P F S K E C L T G - Q R K N T Q V Y T F P S R T K N A - Q D N N G R I P K S I L S L L . . . . . . 51905 ATTTGAACCAAGAGAAGACAAACAACCACAAGCAATATGATAGTAAGGCAGCAAGTAATT I - T K R R Q T T T S N M I V R Q Q V I F E P R E D K Q P Q A I - - - G S K - F D L N Q E K T N N H K Q Y D S K A A S N . . . . . . 51965 CAACCAAACAAATATAACTAGGCAATAATAAACCAATCACACAAGACACCAAGATTTACG Q P N K Y N - A I I N Q S H K T P R F T N Q T N I T R Q - - T N H T R H Q D L R S T K Q I - L G N N K P I T Q D T K I Y . . . . . . 52025 TGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTGTAATCA W K T L R C E E - K T T G P K A P L - S G K P F D V K S K K P R D Q K L H C N H V E N P S M - R V K N H G T K S S T V I . . . . . . 52085 CCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAGTGTCAAACAACGAGCA P R V T I L F S K I G H K T S V K Q R A Q E L Q Y C S P K L A T K Q V S N N E Q T K S Y N I V L Q N W P Q N K C Q T T S . . . . . . 52145 ACAACAAAATAAGACTGTACCAAATCTAGAGAATTAAAGTTGTGAAATCACCAATTTCGC T T K - D C T K S R E L K L - N H Q F R Q Q N K T V P N L E N - S C E I T N F A N N K I R L Y Q I - R I K V V K S P I S . . . . . . 52205 AGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCATAAAATTCAACTCTGTTAGTT S Y C S R Q Q N - S C R P - N S T L L V A T V H D S K T E A A D H K I Q L C - F Q L L F T T A K L K L Q T I K F N S V S . . . . . . 52265 CCTAATCAAAGATTGAGATGAATATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAG P N Q R L R - I - Y A V Q K S A Q S D K L I K D - D E Y N M L S K N Q L N R T R S - S K I E M N I I C C P K I S S I G Q . . . . . . 52325 AAACGAAGCGGGAATCGCAATTTGAAGTTGGCTGTTAGGGCTGAATTTTGACTGCGAAAA K R S G N R N L K L A V R A E F - L R K N E A G I A I - S W L L G L N F D C E K E T K R E S Q F E V G C - G - I L T A K . 52385 ACT T N Maximal non-overlapping open reading frames (>= 64 codons): none PGL 8 (- strand): 57260 56504 AGS-1 (57260 57250,57210 56504) SCR (e 0.727 d 0.921 a 0.603,e 0.953) Exon 1 57260 57250 ( 11 n); score: 0.727 Intron 1 57249 57211 ( 39 n); Pd: 0.921 Pa: 0.603 Exon 2 57210 56504 ( 707 n); score: 0.953 PGS (56787 56504) SGN-E577955- PGS (56904 56607) SGN-E379905- PGS (56732 56608) SGN-E201144- PGS (57260 57250,57210 56798) SGN-E380017+ 3-phase translation of AGS-1 (-strand): . . : . . . . 57260 ATTCTTATGAG : AGTTTTTTTCAGCAGCCAAAAAGAGAGAAAAAGAGCAGTTTTTCGCAGT I L M R : V F F S S Q K E R K R A V F R S F L - : E F F S A A K K R E K E Q F F A V S Y E : S F F Q Q P K R E K K S S F S Q . . . . . . 57161 CAAAATTCAGCCTTAACAACCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGAT Q N S A L T T N F K L R F P L R F L S D K I Q P - Q P T S N C D S R F V S C P I S K F S L N N Q L Q I A I P A S F L V R . . . . . . 57101 TGAGCTGATTTTTGGACAGCATATTATCTTAATCTCAATATTTGATTAGGAACTAACATA - A D F W T A Y Y L N L N I - L G T N I E L I F G Q H I I L I S I F D - E L T - L S - F L D S I L S - S Q Y L I R N - H . . . . . . 57041 GTTGGATTTGGTAGTCTGCAGCTTCAGTTTTGCTATCGTGAACAGTAGCTGTGAAATTGG V G F G S L Q L Q F C Y R E Q - L - N W L D L V V C S F S F A I V N S S C E I G S W I W - S A A S V L L S - T V A V K L . . . . . . 56981 TGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGT - F C S F N S L D L V Q S Y F V V A R C D F A P L I L - I W C N L I L L L L V V V I L L L - F S R F G A I L F C C C S L . . . . . . 56921 TTGGCACTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGT L A L V L W P I L E N N I V T L G D Y S W H L F C G Q F W R T I L - L L V I I V F G T C F V A N F G E Q Y C N S W - L - . . . . . . 56861 GGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATTTT G A F G P V V F Y S S H R R V F H V N F E L L V P W F F T L H I E G F S T - I L W S F W S R G F L L F T S K G F P R K F . . . . . . 56801 GGTGTCTTGTGTGATTGGTTTATTATTGCCTTGTTATATTTGTTTGGTTGAATTACTTGC G V L C D W F I I A L L Y L F G - I T C V S C V I G L L L P C Y I C L V E L L A W C L V - L V Y Y C L V I F V W L N Y L . . . . . . 56741 TGCCTTACTATCATATTGCTTATGGTTGTTTGTCTTCTCTTGGTTCAAATCGAGAAGGGA C L T I I L L M V V C L L L V Q I E K G A L L S Y C L W L F V F S W F K S R R E L P Y Y H I A Y G C L S S L G S N R E G . . . . . . 56681 AAGTATAGACTTGGGTATTCTTCCGCTGTTATCCTGTCAGGCATTCTTTGTTAGTGTCTT K Y R L G Y S S A V I L S G I L C - C L S I D L G I L P L L S C Q A F F V S V L K V - T W V F F R C Y P V R H S L L V S . . . . . . 56621 GTCTTTCCCAACAAAGTGGTATCAGAGCATTGGTTATTGTTGATTGTCTTTTTGAATGAT V F P N K V V S E H W L L L I V F L N D S F P T K W Y Q S I G Y C - L S F - M M C L S Q Q S G I R A L V I V D C L F E - . . . . . . 56561 GGAGGAAAATATGAGCAAAATGGTGTGTTTAAATGTAGTAACTATCATATTTGGAAAG G G K Y E Q N G V F K C S N Y H I W K E E N M S K M V C L N V V T I I F G K W R K I - A K W C V - M - - L S Y L E Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1-_PGL-8_AGS-1_PPS_2 (56978 56751) (frame '1'; 225 bp, 75 residues) 1 FCSFNSLDLV QSYFVVARCL ALVLWPILEN NIVTLGDYSG AFGPVVFYSS HRRVFHVNFG 61 VLCDWFIIAL LYLFG- >C04HBa0031H05.1-_PGL-8_AGS-1_PPS_1 (56806 56579) (frame '2'; 225 bp, 75 residues) 1 ILVSCVIGLL LPCYICLVEL LAALLSYCLW LFVFSWFKSR RESIDLGILP LLSCQAFFVS 61 VLSFPTKWYQ SIGYC- PGL 9 (+ strand): 60359 60593 AGS-1 (60359 60593) SCR (e 0.819) Exon 1 60359 60593 ( 235 n); score: 0.819 PGS (60359 60593) SGN-E338580+ 3-phase translation of AGS-1 (+strand): . . . . . . 60359 CTTCTTTCATTTATTTTTCTTTTTGATTTTTGCTTTTGTTACTAGTTAGTGTGTGAATTT L L S F I F L F D F C F C Y - L V C E F F F H L F F F L I F A F V T S - C V N L S F I Y F S F - F L L L L L V S V - I . . . . . . 60419 ATTGTGAAATAAATTTTGTTATATAGATGGCTGAACAAAATCAATTAAATATGGGTGTGC I V K - I L L Y R W L N K I N - I W V C L - N K F C Y I D G - T K S I K Y G C A Y C E I N F V I - M A E Q N Q L N M G V . . . . . . 60479 CTGATCAAAGTCGAATAAGTATGGTTAGTTCTACGGATAATACACCTACTAATAGCAATG L I K V E - V W L V L R I I H L L I A M - S K S N K Y G - F Y G - Y T Y - - Q - P D Q S R I S M V S S T D N T P T N S N . . . . . . 60539 ATGCGTCAATTTTCACAGAGAAAACAAAAAGAAGAAAAGAAATAGATCCCGGATC M R Q F S Q R K Q K E E K K - I P D C V N F H R E N K K K K R N R S R I D A S I F T E K T K R R K E I D P G Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 60593 GATCCGGGATCTATTTCTTTTCTTCTTTTTGTTTTCTCTGTGAAAATTGACGCATCATTG D P G S I S F L L F V F S V K I D A S L I R D L F L F F F L F S L - K L T H H C S G I Y F F S S F C F L C E N - R I I . . . . . . 60533 CTATTAGTAGGTGTATTATCCGTAGAACTAACCATACTTATTCGACTTTGATCAGGCACA L L V G V L S V E L T I L I R L - S G T Y - - V Y Y P - N - P Y L F D F D Q A H A I S R C I I R R T N H T Y S T L I R H . . . . . . 60473 CCCATATTTAATTGATTTTGTTCAGCCATCTATATAACAAAATTTATTTCACAATAAATT P I F N - F C S A I Y I T K F I S Q - I P Y L I D F V Q P S I - Q N L F H N K F T H I - L I L F S H L Y N K I Y F T I N . . . . . . 60413 CACACACTAACTAGTAACAAAAGCAAAAATCAAAAAGAAAAATAAATGAAAGAAG H T L T S N K S K N Q K E K - M K E T H - L V T K A K I K K K N K - K K S H T N - - Q K Q K S K R K I N E R Maximal non-overlapping open reading frames (>= 64 codons): none PGL 10 (+ strand): 61484 63009 AGS-1 (61484 62071) SCR (e 0.889) Exon 1 61484 62071 ( 588 n); score: 0.889 PGS (61484 62071) SGN-E550684+ 3-phase translation of AGS-1 (+strand): . . . . . . 61484 GATTGTGATAAAATGTTGTCTTTAGATGTGCTTACTAAGTGAAATTTCACCTATTTGATG D C D K M L S L D V L T K - N F T Y L M I V I K C C L - M C L L S E I S P I - C L - - N V V F R C A Y - V K F H L F D . . . . . . 61544 TTGGACATAACAAAAAAGTTTGAGAAGACTTTTGAGAGGTTTAATCTTTATAATGGTAAT L D I T K K F E K T F E R F N L Y N G N W T - Q K S L R R L L R G L I F I M V I V G H N K K V - E D F - E V - S L - W - . . . . . . 61604 TATAATTCTTTTCTTGCTACTGATGTTTGTGAAGATGGAAGTATCACAAGTTCAATTCAC Y N S F L A T D V C E D G S I T S S I H I I L F L L L M F V K M E V S Q V Q F T L - F F S C Y - C L - R W K Y H K F N S . . . . . . 61664 TAATGAAGATTTGGCTACGTGAGGAATGTCACAAAGTTTCTTGAATAATTTTATAAACTC - - R F G Y V R N V T K F L E - F Y K L N E D L A T - G M S Q S F L N N F I N S L M K I W L R E E C H K V S - I I L - T . . . . . . 61724 ACTTTGAAAGTTTCAGGTTCACGGTAAGTTACTTGTAATTTTCATTTTGAGGATATATAT T L K V S G S R - V T C N F H F E D I Y L - K F Q V H G K L L V I F I L R I Y M H F E S F R F T V S Y L - F S F - G Y I . . . . . . 61784 GAACTTGATGCTTATTTTAAAGTATGTATGACAAGTGATGATTTTATTTGAGTAAAATGG E L D A Y F K V C M T S D D F I - V K W N L M L I L K Y V - Q V M I L F E - N G - T - C L F - S M Y D K - - F Y L S K M . . . . . . 61844 ATTCGGGAATTAAAGAAAAGTTCAAGAAATATTGGGGTACTCCTGAAAAGATAAACAAAA I R E L K K S S R N I G V L L K R - T K F G N - R K V Q E I L G Y S - K D K Q N D S G I K E K F K K Y W G T P E K I N K . . . . . . 61904 TATTTTTTATTGCTTCTGTTTTTGGATTCTCGCAATAAATTTGTGTATGTTAGTTTTGCT Y F L L L L F L D S R N K F V Y V S F A I F Y C F C F W I L A I N L C M L V L L I F F I A S V F G F S Q - I C V C - F C . . . . . . 61964 CTTGAATAATTACTTGGGGAAGAAACAGAAAATATAGTGAATAAGAAAGTATGAGACTTA L E - L L G E E T E N I V N K K V - D L L N N Y L G K K Q K I - - I R K Y E T Y S - I I T W G R N R K Y S E - E S M R L . . . . . 62024 CTTAAAGAATTTGTTTATGATATATGTAAGTAAGTATGGAAAAGGTTC L K E F V Y D I C K - V W K R F L K N L F M I Y V S K Y G K G T - R I C L - Y M - V S M E K V Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 62071 GAACCTTTTCCATACTTACTTACATATATCATAAACAAATTCTTTAAGTAAGTCTCATAC E P F P Y L L T Y I I N K F F K - V S Y N L F H T Y L H I S - T N S L S K S H T T F S I L T Y I Y H K Q I L - V S L I . . . . . . 62011 TTTCTTATTCACTATATTTTCTGTTTCTTCCCCAAGTAATTATTCAAGAGCAAAACTAAC F L I H Y I F C F F P K - L F K S K T N F L F T I F S V S S P S N Y S R A K L T L S Y S L Y F L F L P Q V I I Q E Q N - . . . . . . 61951 ATACACAAATTTATTGCGAGAATCCAAAAACAGAAGCAATAAAAAATATTTTGTTTATCT I H K F I A R I Q K Q K Q - K I F C L S Y T N L L R E S K N R S N K K Y F V Y L H T Q I Y C E N P K T E A I K N I L F I . . . . . . 61891 TTTCAGGAGTACCCCAATATTTCTTGAACTTTTCTTTAATTCCCGAATCCATTTTACTCA F Q E Y P N I S - T F L - F P N P F Y S F R S T P I F L E L F F N S R I H F T Q F S G V P Q Y F L N F S L I P E S I L L . . . . . . 61831 AATAAAATCATCACTTGTCATACATACTTTAAAATAAGCATCAAGTTCATATATATCCTC N K I I T C H T Y F K I S I K F I Y I L I K S S L V I H T L K - A S S S Y I S S K - N H H L S Y I L - N K H Q V H I Y P . . . . . . 61771 AAAATGAAAATTACAAGTAACTTACCGTGAACCTGAAACTTTCAAAGTGAGTTTATAAAA K M K I T S N L P - T - N F Q S E F I K K - K L Q V T Y R E P E T F K V S L - N Q N E N Y K - L T V N L K L S K - V Y K . . . . . . 61711 TTATTCAAGAAACTTTGTGACATTCCTCACGTAGCCAAATCTTCATTAGTGAATTGAACT L F K K L C D I P H V A K S S L V N - T Y S R N F V T F L T - P N L H - - I E L I I Q E T L - H S S R S Q I F I S E L N . . . . . . 61651 TGTGATACTTCCATCTTCACAAACATCAGTAGCAAGAAAAGAATTATAATTACCATTATA C D T S I F T N I S S K K R I I I T I I V I L P S S Q T S V A R K E L - L P L - L - Y F H L H K H Q - Q E K N Y N Y H Y . . . . . . 61591 AAGATTAAACCTCTCAAAAGTCTTCTCAAACTTTTTTGTTATGTCCAACATCAAATAGGT K I K P L K S L L K L F C Y V Q H Q I G R L N L S K V F S N F F V M S N I K - V K D - T S Q K S S Q T F L L C P T S N R . . . . . 61531 GAAATTTCACTTAGTAAGCACATCTAAAGACAACATTTTATCACAATC E I S L S K H I - R Q H F I T I K F H L V S T S K D N I L S Q - N F T - - A H L K T T F Y H N Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1-_PGL-10_AGS-1_PPS_1 (62037 61795) (frame '2'; 240 bp, 80 residues) 1 TNSLSKSHTF LFTIFSVSSP SNYSRAKLTY TNLLRESKNR SNKKYFVYLF RSTPIFLELF 61 FNSRIHFTQI KSSLVIHTLK - AGS-2 (62315 62668,62751 62987) SCR (e 0.852 d 0.957 a 0.843,e 0.730) Exon 1 62315 62668 ( 354 n); score: 0.852 Intron 1 62669 62750 ( 82 n); Pd: 0.957 Pa: 0.843 Exon 2 62751 62987 ( 237 n); score: 0.730 PGS (62315 62668,62751 62987) SGN-E539078- 3-phase translation of AGS-2 (+strand): . . . . . . 62315 GTTGGCTCGAGATGTATTGGATATTCCTATGTCGAGTGTGGTATAAGAATGTGCATTTAG V G S R C I G Y S Y V E C G I R M C I - L A R D V L D I P M S S V V - E C A F S W L E M Y W I F L C R V W Y K N V H L . . . . . . 62375 TACCGGTGATCGTATTCTTGATCCCTTTAGAAGTTCATTGACTCCCAAATGTGTGCAATG Y R - S Y S - S L - K F I D S Q M C A M T G D R I L D P F R S S L T P K C V Q C V P V I V F L I P L E V H - L P N V C N . . . . . . 62435 CCTTATTTGTTTTCAAGATTGTCTTAGACAAGAAATTAAGCCTATTTGTGTTGAATAAAG P Y L F S R L S - T R N - A Y L C - I K L I C F Q D C L R Q E I K P I C V E - S A L F V F K I V L D K K L S L F V L N K . . . . . . 62495 TTTGGAGTTTCTTGAAAAAATTGAACTTAAAGACTTTTTTATTTTTTATCTGTTTTTGAA F G V S - K N - T - R L F Y F L S V F E L E F L E K I E L K D F F I F Y L F L K V W S F L K K L N L K T F L F F I C F - . . . . . . 62555 AAAAAAAAGTTATTGTGTTGTATCTTGTATGACATATTTGTTTTTGTTATTTATAGAGAT K K K L L C C I L Y D I F V F V I Y R D K K S Y C V V S C M T Y L F L L F I E M K K K V I V L Y L V - H I C F C Y L - R . . . . . . : 62615 GACAAATAGTGGAAGAAACTCTTCCATTGTTGATTTATGATTGACTTGCAAGCG : GTCCAA D K - W K K L F H C - F M I D L Q A : V Q T N S G R N S S I V D L - L T C K R : S K - Q I V E E T L P L L I Y D - L A S : G P . . . . . . 62757 GAGTCAAGACAATGAAGAAAGACGTAAATTAGTAAGTTTTGTTTGTATTTTTGTTGGCAC E S R Q - R K T - I S K F C L Y F C W H S Q D N E E R R K L V S F V C I F V G T R V K T M K K D V N - - V L F V F L L A . . . . . . 62817 TTGAGACTTGAAAGTTGAAAGTAGTCTCATGGAACAAAATCAAAAATACTTATTATTGTT L R L E S - K - S H G T K S K I L I I V - D L K V E S S L M E Q N Q K Y L L L F L E T - K L K V V S W N K I K N T Y Y C . . . . . . 62877 TTTTGTTTTTGTTGACATTTGAAATTGATCTTATGGAAGAAGGAAAGAAGTTACATTGTT F C F C - H L K L I L W K K E R S Y I V F V F V D I - N - S Y G R R K E V T L F F L F L L T F E I D L M E E G K K L H C . . . . . . 62937 TGTTGATCATTATTGTTTGTTATGTTGTCACTAGAAAGTTGAAACTTGAAA C - S L L F V M L S L E S - N L K V D H Y C L L C C H - K V E T - L L I I I V C Y V V T R K L K L E Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (62440 62523,62611 62668,62751 62773,62804 62887,62982 63009) SCR (e 0.919 d 0.000 a 0.969,e 0.966 d 0.957 a 0.843,e 0.957 d 0.000 a 0.000,e 0.708 d 0.000 a 0.000,e 0.821) Exon 1 62440 62523 ( 84 n); score: 0.919 Intron 1 62524 62610 ( 87 n); Pd: 0.000 Pa: 0.969 Exon 2 62611 62668 ( 58 n); score: 0.966 Intron 2 62669 62750 ( 82 n); Pd: 0.957 Pa: 0.843 Exon 3 62751 62773 ( 23 n); score: 0.957 Intron 3 62774 62803 ( 30 n); Pd: 0.000 Pa: 0.000 Exon 4 62804 62887 ( 84 n); score: 0.708 Intron 4 62888 62981 ( 94 n); Pd: 0.000 Pa: 0.000 Exon 5 62982 63009 ( 28 n); score: 0.821 PGS (62440 62523,62611 62668,62751 62773,62804 62887,62982 63009) SGN-E372630- PGS (62441 62523,62611 62668,62751 62773,62804 62887,62982 63009) SGN-E372631+ PGS (62450 62523,62611 62668,62751 62773,62804 62887,62982 63009) SGN-E289053+ 3-phase translation of AGS-3 (+strand): . . . . . . 62440 TTTGTTTTCAAGATTGTCTTAGACAAGAAATTAAGCCTATTTGTGTTGAATAAAGTTTGG F V F K I V L D K K L S L F V L N K V W L F S R L S - T R N - A Y L C - I K F G C F Q D C L R Q E I K P I C V E - S L . . . : . . . 62500 AGTTTCTTGAAAAAATTGAACTTA : AGATGACAAATAGTGGAAGAAACTCTTCCATTGTTG S F L K K L N L : R - Q I V E E T L P L L V S - K N - T - : D D K - W K K L F H C - E F L E K I E L : K M T N S G R N S S I V . . . : . . : . 62647 ATTTATGATTGACTTGCAAGCG : GTCCAAGAGTCAAGACAATGAAG : TTTTTGTTGGCACTT I Y D - L A S : G P R V K T M K : F L L A L F M I D L Q A : V Q E S R Q - S : F C W H L D L - L T C K R : S K S Q D N E : V F V G T . . . . . . 62819 GAGACTTGAAAGTTGAAAGTAGTCTCATGGAACAAAATCAAAAATACTTATTATTGTTTT E T - K L K V V S W N K I K N T Y Y C F R L E S - K - S H G T K S K I L I I V F - D L K V E S S L M E Q N Q K Y L L L F . : . . . 62879 TTGTTTTTG : TTGAAAGTGGTCTCATGAAAGACATTAT L F L : L K V V S - K T L C F C : - K W S H E R H Y F V F : V E S G L M K D I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 11 (+ strand): 64346 64455 AGS-1 (64346 64455) SCR (e 0.982) Exon 1 64346 64455 ( 110 n); score: 0.982 PGS (64346 64455) SGN-E214006- 3-phase translation of AGS-1 (+strand): . . . . . . 64346 AGCTTCGGCGACCGCTCGACCTACCGCGTTAGCCCCAGTACTATAGGGAAGGCCTATGCG S F G D R S T Y R V S P S T I G K A Y A A S A T A R P T A L A P V L - G R P M R L R R P L D L P R - P Q Y Y R E G L C . . . . . 64406 AAGAAAAGGCCTGCCCATAATCAAAGCAAGCCCAAGTCCATGCAAGAAGG K K R P A H N Q S K P K S M Q E R K G L P I I K A S P S P C K K E E K A C P - S K Q A Q V H A R R Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 64455 CCTTCTTGCATGGACTTGGGCTTGCTTTGATTATGGGCAGGCCTTTTCTTCGCATAGGCC P S C M D L G L L - L W A G L F F A - A L L A W T W A C F D Y G Q A F S S H R P F L H G L G L A L I M G R P F L R I G . . . . . 64395 TTCCCTATAGTACTGGGGCTAACGCGGTAGGTCGAGCGGTCGCCGAAGCT F P I V L G L T R - V E R S P K S L - Y W G - R G R S S G R R S L P Y S T G A N A V G R A V A E A Maximal non-overlapping open reading frames (>= 64 codons): none PGL 12 (+ strand): 83214 83365 AGS-1 (83214 83365) SCR (e 0.783) Exon 1 83214 83365 ( 152 n); score: 0.783 PGS (83214 83365) SGN-E376578+ PGS (83214 83365) SGN-E393272+ PGS (83214 83330) SGN-E210228+ 3-phase translation of AGS-1 (+strand): . . . . . . 83214 GATATTTTGGTACATTTGACATAACTTTGATTAAGAATCACAAGATTAAAAAGTCTTCTT D I L V H L T - L - L R I T R L K S L L I F W Y I - H N F D - E S Q D - K V F F Y F G T F D I T L I K N H K I K K S S . . . . . . 83274 TCTTTTCTTGAACTTTGTTCCAAGTCAAACTAGGTCATTCTTTTCAAAACTGAGAAAGTA S F L E L C S K S N - V I L F K T E K V L F L N F V P S Q T R S F F S K L R K Y F F S - T L F Q V K L G H S F Q N - E S . . . . 83334 TTTAATTATATTTTTAGTTGCTTTATAATTCT F N Y I F S C F I I L I I F L V A L - F I - L Y F - L L Y N S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 83365 AGAATTATAAAGCAACTAAAAATATAATTAAATACTTTCTCAGTTTTGAAAAGAATGACC R I I K Q L K I - L N T F S V L K R M T E L - S N - K Y N - I L S Q F - K E - P N Y K A T K N I I K Y F L S F E K N D . . . . . . 83305 TAGTTTGACTTGGAACAAAGTTCAAGAAAAGAAAGAAGACTTTTTAATCTTGTGATTCTT - F D L E Q S S R K E R R L F N L V I L S L T W N K V Q E K K E D F L I L - F L L V - L G T K F K K R K K T F - S C D S . . . . 83245 AATCAAAGTTATGTCAAATGTACCAAAATATC N Q S Y V K C T K I I K V M S N V P K Y - S K L C Q M Y Q N I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 13 (- strand): 90196 88731 AGS-1 (90196 90144,90061 89948,89287 89181,89092 89041,88953 88847,88763 88731) SCR (e 1.000 d 0.985 a 0.998,e 1.000 d 0.997 a 0.998,e 1.000 d 0.850 a 0.995,e 1.000 d 0.999 a 0.969,e 1.000 d 0.998 a 1.000,e 1.000) Exon 1 90196 90144 ( 53 n); score: 1.000 Intron 1 90143 90062 ( 82 n); Pd: 0.985 Pa: 0.998 Exon 2 90061 89948 ( 114 n); score: 1.000 Intron 2 89947 89288 ( 660 n); Pd: 0.997 Pa: 0.998 Exon 3 89287 89181 ( 107 n); score: 1.000 Intron 3 89180 89093 ( 88 n); Pd: 0.850 Pa: 0.995 Exon 4 89092 89041 ( 52 n); score: 1.000 Intron 4 89040 88954 ( 87 n); Pd: 0.999 Pa: 0.969 Exon 5 88953 88847 ( 107 n); score: 1.000 Intron 5 88846 88764 ( 83 n); Pd: 0.998 Pa: 1.000 Exon 6 88763 88731 ( 33 n); score: 1.000 PGS (90196 90144,90061 89948,89287 89181,89092 89041,88953 88847,88763 88731) SGN-E258887+ 3-phase translation of AGS-1 (-strand): . . . . . . : 90196 TGATGAGCACATTGATAAGTTCTCTAGCGTCTTCATCCTCTGAAAGGAGACAG : GTTGCTG - - A H - - V L - R L H P L K G D R : L L D E H I D K F S S V F I L - K E T : G C W M S T L I S S L A S S S S E R R Q : V A . . . . . . 90054 GACGAGCACTCGGTGAGCTTGTTAGGAAGCTTGGAGAAAGAGTCCTTCCTTTGATTATCC D E H S V S L L G S L E K E S F L - L S T S T R - A C - E A W R K S P S F D Y P G R A L G E L V R K L G E R V L P L I I . . . . . : . 89994 CAATATTGTCACGGGGTCTAAAAGATCCAAATCCAAGTAGAAGACAA : GGTGTCTGCATCG Q Y C H G V - K I Q I Q V E D K : V S A S N I V T G S K R S K S K - K T : R C L H R P I L S R G L K D P N P S R R Q : G V C I . . . . . . 89274 GTCTAAGTGAAGTAATGGCCAGTGCTGGCAGGAGTCAATTGTTGAGTTATATGGATGAGC V - V K - W P V L A G V N C - V I W M S S K - S N G Q C W Q E S I V E L Y G - A G L S E V M A S A G R S Q L L S Y M D E . . . . : . . 89214 TTATCCCCACAATTCGGACAGCACTTTGTGATAG : TATGGGCGAGGTTCGGGAATCAGCAG L S P Q F G Q H F V I : V W A R F G N Q Q Y P H N S D S T L - - : Y G R G S G I S R L I P T I R T A L C D S : M G E V R E S A . . . : . . . 89066 GCCTGGCATTTAGTACTCTTTACAAG : AATGCTGGAATGCAAGCAATTGATGAGATTGTTC A W H L V L F T R : M L E C K Q L M R L F P G I - Y S L Q : E C W N A S N - - D C S G L A F S T L Y K : N A G M Q A I D E I V . . . . . . 88919 CAACACTTCTTCATGCACTGGAGGATGAGGATACCTCAGATACTGCTCTGGATGGCTTAA Q H F F M H W R M R I P Q I L L W M A - N T S S C T G G - G Y L R Y C S G W L K P T L L H A L E D E D T S D T A L D G L . . : . . . 88859 AACAAATTCTGAG : TGTCAGGACCACAGCTGTGCTGCCACACATCCT N K F - : V S G P Q L C C H T S T N S E : C Q D H S C A A T H P K Q I L S : V R T T A V L P H I Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1-_PGL-13_AGS-1_PPS_1 (90194 90144,90061 89948,89287 89181,89092 89041,88953 88847,88763 88733) (frame '0'; 462 bp, 154 residues) 1 MSTLISSLAS SSSERRQVAG RALGELVRKL GERVLPLIIP ILSRGLKDPN PSRRQGVCIG 61 LSEVMASAGR SQLLSYMDEL IPTIRTALCD SMGEVRESAG LAFSTLYKNA GMQAIDEIVP 121 TLLHALEDED TSDTALDGLK QILSVRTTAV LPHI PGL 14 (- strand): 99316 99098 AGS-1 (99316 99098) SCR (e 0.929) Exon 1 99316 99098 ( 219 n); score: 0.929 PGS (99316 99098) SGN-E544794+ 3-phase translation of AGS-1 (-strand): . . . . . . 99316 TTTTTTTTTTTTGGGAAACTGGTAAGGTTGAATTCTTCAGCATTAAGGGCATGCTGGCTA F F F F G K L V R L N S S A L R A C W L F F F L G N W - G - I L Q H - G H A G Y F F F W E T G K V E F F S I K G M L A . . . . . . 99256 CCTCCAAAAAGGAATAATTACAAATTTCCTTTCAAATCTATAATCTGGTCTATATCATCT P P K R N N Y K F P F K S I I W S I S S L Q K G I I T N F L S N L - S G L Y H L T S K K E - L Q I S F Q I Y N L V Y I I . . . . . . 99196 ATACAAAGCTGTTTACACCAAAAAGTGGAGATACTATACAATTCCATTTTACTTTGTGGA I Q S C L H Q K V E I L Y N S I L L C G Y K A V Y T K K W R Y Y T I P F Y F V D Y T K L F T P K S G D T I Q F H F T L W . . . . 99136 TGGAATTGGATCTATCTTCAAAACATCTTCCATTTCTTT W N W I Y L Q N I F H F F G I G S I F K T S S I S M E L D L S S K H L P F L Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1-_PGL-14_AGS-1_PPS_1 (99316 99098) (frame '1'; 219 bp, 73 residues) 1 FFFFGKLVRL NSSALRACWL PPKRNNYKFP FKSIIWSISS IQSCLHQKVE ILYNSILLCG 61 WNWIYLQNIF HFF 3-phase translation of AGS-1 (+strand): . . . . . . 99098 AAAGAAATGGAAGATGTTTTGAAGATAGATCCAATTCCATCCACAAAGTAAAATGGAATT K E M E D V L K I D P I P S T K - N G I K K W K M F - R - I Q F H P Q S K M E L R N G R C F E D R S N S I H K V K W N . . . . . . 99158 GTATAGTATCTCCACTTTTTGGTGTAAACAGCTTTGTATAGATGATATAGACCAGATTAT V - Y L H F L V - T A L Y R - Y R P D Y Y S I S T F W C K Q L C I D D I D Q I I C I V S P L F G V N S F V - M I - T R L . . . . . . 99218 AGATTTGAAAGGAAATTTGTAATTATTCCTTTTTGGAGGTAGCCAGCATGCCCTTAATGC R F E R K F V I I P F W R - P A C P - C D L K G N L - L F L F G G S Q H A L N A - I - K E I C N Y S F L E V A S M P L M . . . . 99278 TGAAGAATTCAACCTTACCAGTTTCCCAAAAAAAAAAAA - R I Q P Y Q F P K K K K E E F N L T S F P K K K L K N S T L P V S Q K K K Maximal non-overlapping open reading frames (>= 64 codons): none PGL 15 (- strand): 111042 110792 AGS-1 (111042 110792) SCR (e 0.785) Exon 1 111042 110792 ( 251 n); score: 0.785 PGS (111042 110792) SGN-E332440+ PGS (111020 110800) SGN-E322543- 3-phase translation of AGS-1 (-strand): . . . . . . 111042 TAAAGTTCTTGGTATAAGAAAGCTAGTTTCACCCTTCAGGGTGGCCCAGTGGTTTGGGCT - S S W Y K K A S F T L Q G G P V V W A K V L G I R K L V S P F R V A Q W F G L K F L V - E S - F H P S G W P S G L G . . . . . . 110982 TGGGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCGTGCCAGCGAAAGCAAGGGGTT W D F H V G G L K F E T P C Q R K Q G V G T S M L E V S S S K P R A S E S K G F L G L P C W R S Q V R N P V P A K A R G . . . . . . 110922 TTACTTTTGGGTCGAGCTCGTTGCACCGAGTTTGCCTAGTGCAGGTTACCTCTCCTATGT L L L G R A R C T E F A - C R L P L L C Y F W V E L V A P S L P S A G Y L S Y V F T F G S S S L H R V C L V Q V T S P M . . . . . . 110862 GGTTTGCGAGCTATTGCATAGGAAAGGGTTTTTTACCCTGTGCGTACCCAATGAGTAGCG G L R A I A - E R V F Y P V R T Q - V A V C E L L H R K G F F T L C V P N E - R W F A S Y C I G K G F L P C A Y P M S S . . 110802 GCTTTCCCTTG A F P L S L G F P L Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1-_PGL-15_AGS-1_PPS_1 (111041 110805) (frame '2'; 234 bp, 78 residues) 1 KVLGIRKLVS PFRVAQWFGL GTSMLEVSSS KPRASESKGF YFWVELVAPS LPSAGYLSYV 61 VCELLHRKGF FTLCVPNE- >C04HBa0031H05.1-_PGL-15_AGS-1_PPS_2 (111016 110792) (frame '0'; 225 bp, 75 residues) 1 FHPSGWPSGL GLGLPCWRSQ VRNPVPAKAR GFTFGSSSLH RVCLVQVTSP MWFASYCIGK 61 GFLPCAYPMS SGFPL 3-phase translation of AGS-1 (+strand): . . . . . . 110792 CAAGGGAAAGCCGCTACTCATTGGGTACGCACAGGGTAAAAAACCCTTTCCTATGCAATA Q G K A A T H W V R T G - K T L S Y A I K G K P L L I G Y A Q G K K P F P M Q - R E S R Y S L G T H R V K N P F L C N . . . . . . 110852 GCTCGCAAACCACATAGGAGAGGTAACCTGCACTAGGCAAACTCGGTGCAACGAGCTCGA A R K P H R R G N L H - A N S V Q R A R L A N H I G E V T C T R Q T R C N E L D S S Q T T - E R - P A L G K L G A T S S . . . . . . 110912 CCCAAAAGTAAAACCCCTTGCTTTCGCTGGCACGGGGTTTCGAACTTGAGACCTCCAACA P K S K T P C F R W H G V S N L R P P T P K V K P L A F A G T G F R T - D L Q H T Q K - N P L L S L A R G F E L E T S N . . . . . . 110972 TGGAAGTCCCAAGCCCAAACCACTGGGCCACCCTGAAGGGTGAAACTAGCTTTCTTATAC W K S Q A Q T T G P P - R V K L A F L Y G S P K P K P L G H P E G - N - L S Y T M E V P S P N H W A T L K G E T S F L I . . 111032 CAAGAACTTTA Q E L K N F P R T L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 16 (- strand): 134438 134099 AGS-1 (134438 134099) SCR (e 0.845) Exon 1 134438 134099 ( 340 n); score: 0.845 PGS (134438 134099) SGN-E327901- PGS (134436 134099) SGN-E328085- 3-phase translation of AGS-1 (-strand): . . . . . . 134438 TATACACTCTTACTTGACCATTATAGGGTTACCTCATTTCATTACATATATCTTAGGTTC Y T L L L D H Y R V T S F H Y I Y L R F I H S Y L T I I G L P H F I T Y I L G S Y T L T - P L - G Y L I S L H I S - V . . . . . . 134378 ACTTATTTTTAAATGTATGCTAGACTTATGGGTTTATACATACAAGTCATGAGACTTCGC T Y F - M Y A R L M G L Y I Q V M R L R L I F K C M L D L W V Y T Y K S - D F A H L F L N V C - T Y G F I H T S H E T S . . . . . . 134318 TCATAGTTCATTTAAGTGATTCATATCTTCCTAAAATTATGTTGTACAAGACTTATGCAT S - F I - V I H I F L K L C C T R L M H H S S F K - F I S S - N Y V V Q D L C I L I V H L S D S Y L P K I M L Y K T Y A . . . . . . 134258 CTGGTATGTATTCCAAGATCTCGATTTCAATCTAAGTAGGCAGCATTAGTCTTGAATATT L V C I P R S R F Q S K - A A L V L N I W Y V F Q D L D F N L S R Q H - S - I F S G M Y S K I S I S I - V G S I S L E Y . . . . . . 134198 TAATTTACGTATGACTTAGGAATCAATACGAAATTTAGGCAAGGGAACCCGATTTCAAAT - F T Y D L G I N T K F R Q G N P I S N N L R M T - E S I R N L G K G T R F Q I L I Y V - L R N Q Y E I - A R E P D F K . . . . 134138 CCCTTGGAAAACACTTTACATTTTTCTTTATATTTAATTT P L E N T L H F S L Y L I P W K T L Y I F L Y I - F S L G K H F T F F F I F N Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 134099 AAATTAAATATAAAGAAAAATGTAAAGTGTTTTCCAAGGGATTTGAAATCGGGTTCCCTT K L N I K K N V K C F P R D L K S G S L N - I - R K M - S V F Q G I - N R V P L I K Y K E K C K V F S K G F E I G F P . . . . . . 134159 GCCTAAATTTCGTATTGATTCCTAAGTCATACGTAAATTAAATATTCAAGACTAATGCTG A - I S Y - F L S H T - I K Y S R L M L P K F R I D S - V I R K L N I Q D - C C C L N F V L I P K S Y V N - I F K T N A . . . . . . 134219 CCTACTTAGATTGAAATCGAGATCTTGGAATACATACCAGATGCATAAGTCTTGTACAAC P T - I E I E I L E Y I P D A - V L Y N L L R L K S R S W N T Y Q M H K S C T T A Y L D - N R D L G I H T R C I S L V Q . . . . . . 134279 ATAATTTTAGGAAGATATGAATCACTTAAATGAACTATGAGCGAAGTCTCATGACTTGTA I I L G R Y E S L K - T M S E V S - L V - F - E D M N H L N E L - A K S H D L Y H N F R K I - I T - M N Y E R S L M T C . . . . . . 134339 TGTATAAACCCATAAGTCTAGCATACATTTAAAAATAAGTGAACCTAAGATATATGTAAT C I N P - V - H T F K N K - T - D I C N V - T H K S S I H L K I S E P K I Y V M M Y K P I S L A Y I - K - V N L R Y M - . . . . 134399 GAAATGAGGTAACCCTATAATGGTCAAGTAAGAGTGTATA E M R - P Y N G Q V R V Y K - G N P I M V K - E C I - N E V T L - W S S K S V Maximal non-overlapping open reading frames (>= 64 codons): none PGL 17 (- strand): 140975 135782 AGS-1 (140975 140951,136985 135782) SCR (e 0.840 d 0.000 a 0.000,e 0.859) Exon 1 140975 140951 ( 25 n); score: 0.840 Intron 1 140950 136986 (3965 n); Pd: 0.000 Pa: 0.000 Exon 2 136985 135782 (1204 n); score: 0.859 PGS (136403 135782) SGN-E241731- PGS (136802 136246) SGN-E550629- PGS (136802 136246) SGN-E550645- PGS (136549 136247) SGN-E273427- PGS (140975 140951,136985 136492) SGN-E546519- PGS (136985 136516) SGN-E546025- 3-phase translation of AGS-1 (-strand): . . . : . . . 140975 ACGGACCTCATGACGGTCCGTCATA : CTTATGACGGTCCGTAGGTGGCAGCGTAGAGAAGC T D L M T V R H : T Y D G P - V A A - R S R T S - R S V I : L M T V R R W Q R R E A G P H D G P S Y : L - R S V G G S V E K . . . . . . 136950 TGCTGAAGGAAGATGGGGAAGCCTGACCAAGTGTGGGATTAAGAAGCTTGTGACGGTCCG C - R K M G K P D Q V W D - E A C D G P A E G R W G S L T K C G I K K L V T V R L L K E D G E A - P S V G L R S L - R S . . . . . . 136890 TCATGGCTATGATGGTCCGTCCTGCAGGTTCGTCGTGAAGATTAGAGAAGTGATCCTAGT S W L - W S V L Q V R R E D - R S D P S H G Y D G P S C R F V V K I R E V I L V V M A M M V R P A G S S - R L E K - S - . . . . . . 136830 ACCCAGATTCCAAGAGTTGAAGTATTTTGAAACGAGACCCTCGACGGACCGTTGTGCTTA T Q I P R V E V F - N E T L D G P L C L P R F Q E L K Y F E T R P S T D R C A Y Y P D S K S - S I L K R D P R R T V V L . . . . . . 136770 TGACAGTCCGTCACACTTGCCGTCGAGGGGAATGAAGAAAGCAGCAGAAGAATTGCACCA - Q S V T L A V E G N E E S S R R I A P D S P S H L P S R G M K K A A E E L H Q M T V R H T C R R G E - R K Q Q K N C T . . . . . . 136710 AGTATGGGACGACGGAGTCCACGACGGTCTGTCATGACCACGACGGTCCGTCGCATGGTC S M G R R S P R R S V M T T T V R R M V V W D D G V H D G L S - P R R S V A W S K Y G T T E S T T V C H D H D G P S H G . . . . . . 136650 CGTCGACCCAGCCGCGTTTTGGCAGATTTCCAGTAATTAGAATCCTTATTTAATTAGGTT R R P S R V L A D F Q - L E S L F N - V V D P A A F W Q I S S N - N P Y L I R F P S T Q P R F G R F P V I R I L I - L G . . . . . . 136590 TTTATTTTTTTATAAATAGTTCAAAAAACCTCGTTTTTGAGGTTAGACTCGGTGATATTA F I F L - I V Q K T S F L R L D S V I L L F F Y K - F K K P R F - G - T R - Y - F Y F F I N S S K N L V F E V R L G D I . . . . . . 136530 AACCTTATATTGCTAGACTTGTGTTTGGAGTGTTTGATTGTTAGAGATTCTTACAAGTGA N L I L L D L C L E C L I V R D S Y K - T L Y C - T C V W S V - L L E I L T S D K P Y I A R L V F G V F D C - R F L Q V . . . . . . 136470 TTTTTGGTGATTAATCAAGCAAATTTTCGGACTTTATTCTTTCTCATTGAAGTAAGTACA F L V I N Q A N F R T L F F L I E V S T F W - L I K Q I F G L Y S F S L K - V H I F G D - S S K F S D F I L S H - S K Y . . . . . . 136410 TGAATTCTTGTTTACCATATTTGAATATTGTGTTTATGGCTATGAGGAACTAAACTCCAT - I L V Y H I - I L C L W L - G T K L H E F L F T I F E Y C V Y G Y E E L N S I M N S C L P Y L N I V F M A M R N - T P . . . . . . 136350 ATCTAGGGTTGTGGGAACCATAGGCAAATAATGAGATAAACCCTAGCTAAAATAACAATT I - G C G N H R Q I M R - T L A K I T I S R V V G T I G K - - D K P - L K - Q F Y L G L W E P - A N N E I N P S - N N N . . . . . . 136290 CTAGAATCGTGTCTTGCATGTATTAATAATTCTTTCGCTTAGAAGTCTTTTTAACGGATG L E S C L A C I N N S F A - K S F - R M - N R V L H V L I I L S L R S L F N G - S R I V S C M Y - - F F R L E V F L T D . . . . . . 136230 ATCAACGTTAGAACTCGCCTTAATGCTACTTGCCGGACCAAGGAGGTAGATAATAGGAAA I N V R T R L N A T C R T K E V D N R K S T L E L A L M L L A G P R R - I I G K D Q R - N S P - C Y L P D Q G G R - - E . . . . . . 136170 AGAATTATTAACATAGATTTAGTGTATACTATCTAATAGGCTAGTATTGATTGGTACGAT R I I N I D L V Y T I - - A S I D W Y D E L L T - I - C I L S N R L V L I G T M K N Y - H R F S V Y Y L I G - Y - L V R . . . . . . 136110 GTAATAACTTAGTCAAATATAGAATACGATGCTTAATATGAGGTAAGGATAAGGGTTAGG V I T - S N I E Y D A - Y E V R I R V R - - L S Q I - N T M L N M R - G - G L G C N N L V K Y R I R C L I - G K D K G - . . . . . . 136050 AAAGCAACACACGTAGCCGGACCAAGGTGCGGAGTGAGATTTTCTAGATGCCGGACCAAG K A T H V A G P R C G V R F S R C R T K K Q H T - P D Q G A E - D F L D A G P R E S N T R S R T K V R S E I F - M P D Q . . . . . . 135990 GATTTAGAAATACATAACTTATCACTTTGCATGCAAGATACTAGGAAAGAATTGTTATAG D L E I H N L S L C M Q D T R K E L L - I - K Y I T Y H F A C K I L G K N C Y S G F R N T - L I T L H A R Y - E R I V I . . . . . . 135930 TTAGAATTATCAAGTTATAAACCTGTGGGGAACACGTAAACCCTAGTTACTTTGATTACT L E L S S Y K P V G N T - T L V T L I T - N Y Q V I N L W G T R K P - L L - L L V R I I K L - T C G E H V N P S Y F D Y . . . . . . 135870 TGACTAAAACTCAACATTAAAAGCTGTTAAGTGTCTCTTTCAAGTTCGTTAGTTATTTTT - L K L N I K S C - V S L S S S L V I F D - N S T L K A V K C L F Q V R - L F L L T K T Q H - K L L S V S F K F V S Y F . . . 135810 GCTCATTAGGAAATACAAACCCCCCTTTT A H - E I Q T P L L I R K Y K P P F C S L G N T N P P F Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1-_PGL-17_AGS-1_PPS_1 (140962 140951,136985 136674) (frame '2'; 321 bp, 107 residues) 1 RSVILMTVRR WQRREAAEGR WGSLTKCGIK KLVTVRHGYD GPSCRFVVKI REVILVPRFQ 61 ELKYFETRPS TDRCAYDSPS HLPSRGMKKA AEELHQVWDD GVHDGLS- AGS-2 (137484 136502) SCR (e 0.847) Exon 1 137484 136502 ( 983 n); score: 0.847 PGS (137050 136502) SGN-E369290- PGS (137050 136502) SGN-E369291+ PGS (137050 136516) SGN-E261921+ PGS (137050 136601) SGN-E322644+ PGS (137164 136627) SGN-E346859+ PGS (137157 136662) SGN-E286708- PGS (137157 136662) SGN-E540293- PGS (137322 136678) SGN-E352282- PGS (137137 136678) SGN-E243969- PGS (137484 136788) SGN-E578039- PGS (137157 136796) SGN-E577891- PGS (137050 136966) SGN-E546067+ PGS (137114 136973) SGN-E356584- 3-phase translation of AGS-2 (-strand): . . . . . . 137484 GTAATCCTTATACTCAAACTGAAATCATTGTGTGAAAAATGAGGATTTTGTTCTAAAGTG V I L I L K L K S L C E K - G F C S K V - S L Y S N - N H C V K N E D F V L K - N P Y T Q T E I I V - K M R I L F - S . . . . . . 137424 AGGACACTAGTTGCTATACCGGAATTGTTAGCCTCTCGGTGAGAAATTGAAGAGGATAGG R T L V A I P E L L A S R - E I E E D R G H - L L Y R N C - P L G E K L K R I G E D T S C Y T G I V S L S V R N - R G - . . . . . . 137364 TGTTAGTGCGTGGTGAGTCTGTGTCATGTTCGAATCCCACAAAATTCAAGCCTAATAGTG C - C V V S L C H V R I P Q N S S L I V V S A W - V C V M F E S H K I Q A - - - V L V R G E S V S C S N P T K F K P N S . . . . . . 137304 ATAGCATGCATAGATTTGATGAGATTAATCGGGATTGATAGCCAAATGATTGCAAAGGAT I A C I D L M R L I G I D S Q M I A K D - H A - I - - D - S G L I A K - L Q R I D S M H R F D E I N R D - - P N D C K G . . . . . . 137244 AAAAACATGAATACTATTGTACAAAGATTGTGTAGTGAGTCATAGTGCTTCGCTTGAGGA K N M N T I V Q R L C S E S - C F A - G K T - I L L Y K D C V V S H S A S L E D - K H E Y Y C T K I V - - V I V L R L R . . . . . . 137184 CAAACAACAAATTTAAGTTGAGGGTGTTGATATACCGTGGTTTCACAGTATAATTAATAC Q T T N L S - G C - Y T V V S Q Y N - Y K Q Q I - V E G V D I P W F H S I I N T T N N K F K L R V L I Y R G F T V - L I . . . . . . 137124 TTTTTCCTTAAGTTTAGTGTATTTGAAAGCCCTTTTTGTGCTAATTTTGATATAAGTTTC F F L K F S V F E S P F C A N F D I S F F S L S L V Y L K A L F V L I L I - V S L F P - V - C I - K P F L C - F - Y K F . . . . . . 137064 TCTTTGTTTTGCAGGAAATCTGTCCAAAGCTGAATGCGGAGATTTTGAGCGAAAAATGCA S L F C R K S V Q S - M R R F - A K N A L C F A G N L S K A E C G D F E R K M Q L F V L Q E I C P K L N A E I L S E K C . . . . . . 137004 GAAGAGACCACCTACGGAGCTTATGACGGTCCGTAGGTGGCAGCGTAGAGAAGCTGCTGA E E T T Y G A Y D G P - V A A - R S C - K R P P T E L M T V R R W Q R R E A A E R R D H L R S L - R S V G G S V E K L L . . . . . . 136944 AGGAAGATGGGGAAGCCTGACCAAGTGTGGGATTAAGAAGCTTGTGACGGTCCGTCATGG R K M G K P D Q V W D - E A C D G P S W G R W G S L T K C G I K K L V T V R H G K E D G E A - P S V G L R S L - R S V M . . . . . . 136884 CTATGATGGTCCGTCCTGCAGGTTCGTCGTGAAGATTAGAGAAGTGATCCTAGTACCCAG L - W S V L Q V R R E D - R S D P S T Q Y D G P S C R F V V K I R E V I L V P R A M M V R P A G S S - R L E K - S - Y P . . . . . . 136824 ATTCCAAGAGTTGAAGTATTTTGAAACGAGACCCTCGACGGACCGTTGTGCTTATGACAG I P R V E V F - N E T L D G P L C L - Q F Q E L K Y F E T R P S T D R C A Y D S D S K S - S I L K R D P R R T V V L M T . . . . . . 136764 TCCGTCACACTTGCCGTCGAGGGGAATGAAGAAAGCAGCAGAAGAATTGCACCAAGTATG S V T L A V E G N E E S S R R I A P S M P S H L P S R G M K K A A E E L H Q V W V R H T C R R G E - R K Q Q K N C T K Y . . . . . . 136704 GGACGACGGAGTCCACGACGGTCTGTCATGACCACGACGGTCCGTCGCATGGTCCGTCGA G R R S P R R S V M T T T V R R M V R R D D G V H D G L S - P R R S V A W S V D G T T E S T T V C H D H D G P S H G P S . . . . . . 136644 CCCAGCCGCGTTTTGGCAGATTTCCAGTAATTAGAATCCTTATTTAATTAGGTTTTTATT P S R V L A D F Q - L E S L F N - V F I P A A F W Q I S S N - N P Y L I R F L F T Q P R F G R F P V I R I L I - L G F Y . . . . . . 136584 TTTTTATAAATAGTTCAAAAAACCTCGTTTTTGAGGTTAGACTCGGTGATATTAAACCTT F L - I V Q K T S F L R L D S V I L N L F Y K - F K K P R F - G - T R - Y - T L F F I N S S K N L V F E V R L G D I K P . . . 136524 ATATTGCTAGACTTGTGTTTGGA I L L D L C L Y C - T C V W Y I A R L V F G Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1-_PGL-17_AGS-2_PPS_1 (137069 136674) (frame '2'; 393 bp, 131 residues) 1 VSLCFAGNLS KAECGDFERK MQKRPPTELM TVRRWQRREA AEGRWGSLTK CGIKKLVTVR 61 HGYDGPSCRF VVKIREVILV PRFQELKYFE TRPSTDRCAY DSPSHLPSRG MKKAAEELHQ 121 VWDDGVHDGL S- 3-phase translation of AGS-2 (+strand): . . . . . . 136502 TCCAAACACAAGTCTAGCAATATAAGGTTTAATATCACCGAGTCTAACCTCAAAAACGAG S K H K S S N I R F N I T E S N L K N E P N T S L A I - G L I S P S L T S K T R Q T Q V - Q Y K V - Y H R V - P Q K R . . . . . . 136562 GTTTTTTGAACTATTTATAAAAAAATAAAAACCTAATTAAATAAGGATTCTAATTACTGG V F - T I Y K K I K T - L N K D S N Y W F F E L F I K K - K P N - I R I L I T G G F L N Y L - K N K N L I K - G F - L L . . . . . . 136622 AAATCTGCCAAAACGCGGCTGGGTCGACGGACCATGCGACGGACCGTCGTGGTCATGACA K S A K T R L G R R T M R R T V V V M T N L P K R G W V D G P C D G P S W S - Q E I C Q N A A G S T D H A T D R R G H D . . . . . . 136682 GACCGTCGTGGACTCCGTCGTCCCATACTTGGTGCAATTCTTCTGCTGCTTTCTTCATTC D R R G L R R P I L G A I L L L L S S F T V V D S V V P Y L V Q F F C C F L H S R P S W T P S S H T W C N S S A A F F I . . . . . . 136742 CCCTCGACGGCAAGTGTGACGGACTGTCATAAGCACAACGGTCCGTCGAGGGTCTCGTTT P S T A S V T D C H K H N G P S R V S F P R R Q V - R T V I S T T V R R G S R F P L D G K C D G L S - A Q R S V E G L V . . . . . . 136802 CAAAATACTTCAACTCTTGGAATCTGGGTACTAGGATCACTTCTCTAATCTTCACGACGA Q N T S T L G I W V L G S L L - S S R R K I L Q L L E S G Y - D H F S N L H D E S K Y F N S W N L G T R I T S L I F T T . . . . . . 136862 ACCTGCAGGACGGACCATCATAGCCATGACGGACCGTCACAAGCTTCTTAATCCCACACT T C R T D H H S H D G P S Q A S - S H T P A G R T I I A M T D R H K L L N P T L N L Q D G P S - P - R T V T S F L I P H . . . . . . 136922 TGGTCAGGCTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGACCGTCA W S G F P I F L Q Q L L Y A A T Y G P S G Q A S P S S F S S F S T L P P T D R H L V R L P H L P S A A S L R C H L R T V . . . . . . 136982 TAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTCGCTCAAAATCTCCGCATTCAGCTTTGG - A P - V V S S A F F A Q N L R I Q L W K L R R W S L L H F S L K I S A F S F G I S S V G G L F C I F R S K S P H S A L . . . . . . 137042 ACAGATTTCCTGCAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAGGGCTTTCA T D F L Q N K E K L I S K L A Q K G L S Q I S C K T K R N L Y Q N - H K K G F Q D R F P A K Q R E T Y I K I S T K R A F . . . . . . 137102 AATACACTAAACTTAAGGAAAAAGTATTAATTATACTGTGAAACCACGGTATATCAACAC N T L N L R K K Y - L Y C E T T V Y Q H I H - T - G K S I N Y T V K P R Y I N T K Y T K L K E K V L I I L - N H G I S T . . . . . . 137162 CCTCAACTTAAATTTGTTGTTTGTCCTCAAGCGAAGCACTATGACTCACTACACAATCTT P Q L K F V V C P Q A K H Y D S L H N L L N L N L L F V L K R S T M T H Y T I F P S T - I C C L S S S E A L - L T T Q S . . . . . . 137222 TGTACAATAGTATTCATGTTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAAT C T I V F M F L S F A I I W L S I P I N V Q - Y S C F Y P L Q S F G Y Q S R L I L Y N S I H V F I L C N H L A I N P D - . . . . . . 137282 CTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTTTGTGGGATTCGAACATGA L I K S M H A I T I R L E F C G I R T - S S N L C M L S L L G L N F V G F E H D S H Q I Y A C Y H Y - A - I L W D S N M . . . . . . 137342 CACAGACTCACCACGCACTAACACCTATCCTCTTCAATTTCTCACCGAGAGGCTAACAAT H R L T T H - H L S S S I S H R E A N N T D S P R T N T Y P L Q F L T E R L T I T Q T H H A L T P I L F N F S P R G - Q . . . . . . 137402 TCCGGTATAGCAACTAGTGTCCTCACTTTAGAACAAAATCCTCATTTTTCACACAATGAT S G I A T S V L T L E Q N P H F S H N D P V - Q L V S S L - N K I L I F H T M I F R Y S N - C P H F R T K S S F F T Q - . . . 137462 TTCAGTTTGAGTATAAGGATTAC F S L S I R I S V - V - G L F Q F E Y K D Y Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1+_PGL-17_AGS-2_PPS_2 (136598 136849) (frame '1'; 249 bp, 83 residues) 1 LNKDSNYWKS AKTRLGRRTM RRTVVVMTDR RGLRRPILGA ILLLLSSFPS TASVTDCHKH 61 NGPSRVSFQN TSTLGIWVLG SLL- >C04HBa0031H05.1+_PGL-17_AGS-2_PPS_1 (136891 137142) (frame '0'; 249 bp, 83 residues) 1 RTVTSFLIPH LVRLPHLPSA ASLRCHLRTV ISSVGGLFCI FRSKSPHSAL DRFPAKQRET 61 YIKISTKRAF KYTKLKEKVL IIL- >C04HBa0031H05.1+_PGL-17_AGS-2_PPS_3 (136836 137084) (frame '2'; 246 bp, 82 residues) 1 DHFSNLHDEP AGRTIIAMTD RHKLLNPTLG QASPSSFSSF STLPPTDRHK LRRWSLLHFS 61 LKISAFSFGQ ISCKTKRNLY QN- >C04HBa0031H05.1+_PGL-17_AGS-2_PPS_4 (137132 137341) (frame '1'; 207 bp, 69 residues) 1 LYCETTVYQH PQLKFVVCPQ AKHYDSLHNL CTIVFMFLSF AIIWLSIPIN LIKSMHAITI 61 RLEFCGIRT- AGS-3 (137806 137537) SCR (e 0.880) Exon 1 137806 137537 ( 270 n); score: 0.880 PGS (137806 137537) SGN-E244201- 3-phase translation of AGS-3 (-strand): . . . . . . 137806 AAGAATTACAAACGAGAAAAGAAAAGAGTTACTTACACAAATGAAGAAAGAAGGAAAACA K N Y K R E K K R V T Y T N E E R R K T R I T N E K R K E L L T Q M K K E G K Q E L Q T R K E K S Y L H K - R K K E N . . . . . . 137746 GCAAGGTGAAAGAATAGGAGAAACTGGGCGAGATAAAGTGATAGAAAGTGGAAGGTTTAG A R - K N R R N W A R - S D R K W K V - Q G E R I G E T G R D K V I E S G R F S S K V K E - E K L G E I K - - K V E G L . . . . . . 137686 CCGATATGTCAACGAGGGCAGAAAGTCACTAAAGTATACCTAAATATACCCTACCTGACT P I C Q R G Q K V T K V Y L N I P Y L T R Y V N E G R K S L K Y T - I Y P T - L A D M S T R A E S H - S I P K Y T L P D . . . . . . 137626 CTGAGCCTACGTTACAAGCTAAAAAAAGTCCTATCGTGATCCTAAGGGTTGTATAGCGAA L S L R Y K L K K V L S - S - G L Y S E - A Y V T S - K K S Y R D P K G C I A N S E P T L Q A K K S P I V I L R V V - R . . . 137566 CTTAAGGCAGTAAAAATAAGGGCAAGCTTA L K A V K I R A S L L R Q - K - G Q A T - G S K N K G K L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (+strand): . . . . . . 137537 TAAGCTTGCCCTTATTTTTACTGCCTTAAGTTCGCTATACAACCCTTAGGATCACGATAG - A C P Y F Y C L K F A I Q P L G S R - K L A L I F T A L S S L Y N P - D H D R S L P L F L L P - V R Y T T L R I T I . . . . . . 137597 GACTTTTTTTAGCTTGTAACGTAGGCTCAGAGTCAGGTAGGGTATATTTAGGTATACTTT D F F - L V T - A Q S Q V G Y I - V Y F T F F S L - R R L R V R - G I F R Y T L G L F L A C N V G S E S G R V Y L G I L . . . . . . 137657 AGTGACTTTCTGCCCTCGTTGACATATCGGCTAAACCTTCCACTTTCTATCACTTTATCT S D F L P S L T Y R L N L P L S I T L S V T F C P R - H I G - T F H F L S L Y L - - L S A L V D I S A K P S T F Y H F I . . . . . . 137717 CGCCCAGTTTCTCCTATTCTTTCACCTTGCTGTTTTCCTTCTTTCTTCATTTGTGTAAGT R P V S P I L S P C C F P S F F I C V S A Q F L L F F H L A V F L L S S F V - V S P S F S Y S F T L L F S F F L H L C K . . . 137777 AACTCTTTTCTTTTCTCGTTTGTAATTCTT N S F L F S F V I L T L F F S R L - F - L F S F L V C N S Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (139014 138936,138811 138465) SCR (e 0.778 d 0.000 a 0.000,e 0.833) Exon 1 139014 138936 ( 79 n); score: 0.778 Intron 1 138935 138812 ( 124 n); Pd: 0.000 Pa: 0.000 Exon 2 138811 138465 ( 347 n); score: 0.833 PGS (139014 138936,138811 138465) SGN-E577987- 3-phase translation of AGS-4 (-strand): . . . . . . 139014 AGAGAGTGCCAAGAGGCGGAGGGGTCGATAAGAGGATGAGGCGCGAGCAAGGAAGAAGGA R E C Q E A E G S I R G - G A S K E E G E S A K R R R G R - E D E A R A R K K E R V P R G G G V D K R M R R E Q G R R . . : . . . . 138954 GCGCCGAGAGATGGAGGCC : CTGAGGACATCACTTAGGGTGTCTAGATTGCAGAGGATGTG A P R D G G : P E D I T - G V - I A E D V R R E M E A : L R T S L R V S R L Q R M W S A E R W R P : - G H H L G C L D C R G C . . . . . . 138770 GGTTCTGGGAAACCAGACCCACCAACTTGTTGATCAACGGCGCTATGAGCCACAGGTTTG G S G K P D P P T C - S T A L - A T G L V L G N Q T H Q L V D Q R R Y E P Q V C G F W E T R P T N L L I N G A M S H R F . . . . . . 138710 CTTCACCTACCCCTCTAATCTTTAGATATTTTTTTTATGCATTGGGGACAATTGCATGCT L H L P L - S L D I F F M H W G Q L H A F T Y P S N L - I F F L C I G D N C M L A S P T P L I F R Y F F Y A L G T I A C . . . . . . 138650 TTTTTGTTGGGGTGGGGTAAATGGAAAGTGAGTGTTAGGGTGAAGTCTGAGTAGCCCAAC F L L G W G K W K V S V R V K S E - P N F C W G G V N G K - V L G - S L S S P T F F V G V G - M E S E C - G E V - V A Q . . . . . . 138590 TCACTATCCTTTTTTGGGATTTTCTTGCCTGTGTTCTTTTTCCCCAATAGACTGATTACT S L S F F G I F L P V F F F P N R L I T H Y P F L G F S C L C S F S P I D - L L L T I L F W D F L A C V L F P Q - T D Y . . . . . . 138530 TTTTCTGTTGAACCGGCACGTTATATCTTTTGTACATAGTTTAACTCTGAAGCATGATGG F S V E P A R Y I F C T - F N S E A - W F L L N R H V I S F V H S L T L K H D G F F C - T G T L Y L L Y I V - L - S M M . 138470 CTAAAA L K - A K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-5 (139021 138500) SCR (e 0.762) Exon 1 139021 138500 ( 522 n); score: 0.762 PGS (139021 138500) SGN-E243970+ 3-phase translation of AGS-5 (-strand): . . . . . . 139021 CCCCGAGAGAGAGTGCCAAGAGGCGGAGGGGTCGATAAGAGGATGAGGCGCGAGCAAGGA P R E R V P R G G G V D K R M R R E Q G P E R E C Q E A E G S I R G - G A S K E P R E S A K R R R G R - E D E A R A R . . . . . . 138961 AGAAGGAGCGCCGAGAGATGGAGGCCGCGAGGAGAGCCTCACTTGCTGAGGCGGAGGCAC R R S A E R W R P R G E P H L L R R R H E G A P R D G G R E E S L T C - G G G T K K E R R E M E A A R R A S L A E A E A . . . . . . 138901 ACCAGATCAGAGCATCACAGATAGCGGTTGGGGCGTCTAGCTCCCGCACTGTAGAGACAG T R S E H H R - R L G R L A P A L - R Q P D Q S I T D S G W G V - L P H C R D S H Q I R A S Q I A V G A S S S R T V E T . . . . . . 138841 TAGGAGGCACTACTGAGGGTGCGGTTGTTGCTGAGGACATCACTTAGGGTGTCTAGATTG - E A L L R V R L L L R T S L R V S R L R R H Y - G C G C C - G H H L G C L D C V G G T T E G A V V A E D I T - G V - I . . . . . . 138781 CAGAGGATGTGGGTTCTGGGAAACCAGACCCACCAACTTGTTGATCAACGGCGCTATGAG Q R M W V L G N Q T H Q L V D Q R R Y E R G C G F W E T R P T N L L I N G A M S A E D V G S G K P D P P T C - S T A L - . . . . . . 138721 CCACAGGTTTGCTTCACCTACCCCTCTAATCTTTAGATATTTTTTTTATGCATTGGGGAC P Q V C F T Y P S N L - I F F L C I G D H R F A S P T P L I F R Y F F Y A L G T A T G L L H L P L - S L D I F F M H W G . . . . . . 138661 AATTGCATGCTTTTTTGTTGGGGTGGGGTAAATGGAAAGTGAGTGTTAGGGTGAAGTCTG N C M L F C W G G V N G K - V L G - S L I A C F F V G V G - M E S E C - G E V - Q L H A F L L G W G K W K V S V R V K S . . . . . . 138601 AGTAGCCCAACTCACTATCCTTTTTTGGGATTTTCTTGCCTGTGTTCTTTTTCCCCAATA S S P T H Y P F L G F S C L C S F S P I V A Q L T I L F W D F L A C V L F P Q - E - P N S L S F F G I F L P V F F F P N . . . . . 138541 GACTGATTACTTTTTCTGTTGAACCGGCACGTTATATCTTTT D - L L F L L N R H V I S F T D Y F F C - T G T L Y L R L I T F S V E P A R Y I F Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-5 (+strand): . . . . . . 138500 AAAAGATATAACGTGCCGGTTCAACAGAAAAAGTAATCAGTCTATTGGGGAAAAAGAACA K R Y N V P V Q Q K K - S V Y W G K R T K D I T C R F N R K S N Q S I G E K E H K I - R A G S T E K V I S L L G K K N . . . . . . 138560 CAGGCAAGAAAATCCCAAAAAAGGATAGTGAGTTGGGCTACTCAGACTTCACCCTAACAC Q A R K S Q K R I V S W A T Q T S P - H R Q E N P K K G - - V G L L R L H P N T T G K K I P K K D S E L G Y S D F T L T . . . . . . 138620 TCACTTTCCATTTACCCCACCCCAACAAAAAAGCATGCAATTGTCCCCAATGCATAAAAA S L S I Y P T P T K K H A I V P N A - K H F P F T P P Q Q K S M Q L S P M H K K L T F H L P H P N K K A C N C P Q C I K . . . . . . 138680 AAATATCTAAAGATTAGAGGGGTAGGTGAAGCAAACCTGTGGCTCATAGCGCCGTTGATC K Y L K I R G V G E A N L W L I A P L I N I - R L E G - V K Q T C G S - R R - S K I S K D - R G R - S K P V A H S A V D . . . . . . 138740 AACAAGTTGGTGGGTCTGGTTTCCCAGAACCCACATCCTCTGCAATCTAGACACCCTAAG N K L V G L V S Q N P H P L Q S R H P K T S W W V W F P R T H I L C N L D T L S Q Q V G G S G F P E P T S S A I - T P - . . . . . . 138800 TGATGTCCTCAGCAACAACCGCACCCTCAGTAGTGCCTCCTACTGTCTCTACAGTGCGGG - C P Q Q Q P H P Q - C L L L S L Q C G D V L S N N R T L S S A S Y C L Y S A G V M S S A T T A P S V V P P T V S T V R . . . . . . 138860 AGCTAGACGCCCCAACCGCTATCTGTGATGCTCTGATCTGGTGTGCCTCCGCCTCAGCAA S - T P Q P L S V M L - S G V P P P Q Q A R R P N R Y L - C S D L V C L R L S K E L D A P T A I C D A L I W C A S A S A . . . . . . 138920 GTGAGGCTCTCCTCGCGGCCTCCATCTCTCGGCGCTCCTTCTTCCTTGCTCGCGCCTCAT V R L S S R P P S L G A P S S L L A P H - G S P R G L H L S A L L L P C S R L I S E A L L A A S I S R R S F F L A R A S . . . . . 138980 CCTCTTATCGACCCCTCCGCCTCTTGGCACTCTCTCTCGGGG P L I D P S A S W H S L S G L L S T P P P L G T L S R S S Y R P L R L L A L S L G Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1+_PGL-17_AGS-5_PPS_1 (138799 139020) (frame '0'; 222 bp, 74 residues) 1 VMSSATTAPS VVPPTVSTVR ELDAPTAICD ALIWCASASA SEALLAASIS RRSFFLARAS 61 SSYRPLRLLA LSLG AGS-6 (140359 139645) SCR (e 0.839) Exon 1 140359 139645 ( 715 n); score: 0.839 PGS (140359 139645) SGN-E578194- 3-phase translation of AGS-6 (-strand): . . . . . . 140359 AGTTTCAAGTTTACTCAGACGCGAAGTTCTTGACCGATAAAGGAGTAATGACTCGAAAAC S F K F T Q T R S S - P I K E - - L E N V S S L L R R E V L D R - R S N D S K T F Q V Y S D A K F L T D K G V M T R K . . . . . . 140299 TCATCCTGGAGCGACGGGTACCTACAGGAAGTCTCCTCTCGATGCCGGAGATCCACAACA S S W S D G Y L Q E V S S R C R R S T T H P G A T G T Y R K S P L D A G D P Q H L I L E R R V P T G S L L S M P E I H N . . . . . . 140239 CATTCACCAGGCATCGCTTAGAGTGGACAGCCCGTCCGTTGGGACGATACAGCGAGGAGA H S P G I A - S G Q P V R W D D T A R R I H Q A S L R V D S P S V G T I Q R G D T F T R H R L E W T A R P L G R Y S E E . . . . . . 140179 TGGTCCAAGAGTTCTACGCGTCCTACGTAGCGAATCTCCGATCACAGATCGACAGGCGGA W S K S S T R P T - R I S D H R S T G G G P R V L R V L R S E S P I T D R Q A D M V Q E F Y A S Y V A N L R S Q I D R R . . . . . . 140119 CTGCTCCCGCTAAACAGTCCCCATTGGAGCAGGTTCTAGTCCGGGGTGTGCAGGTTGACA L L P L N S P H W S R F - S G V C R L T C S R - T V P I G A G S S P G C A G - H T A P A K Q S P L E Q V L V R G V Q V D . . . . . . 140059 TTTCCCTGCCCGCCATTCGCCGGTTCCTATACGGCGAGAGTGCAGATGCTACTCGGACCC F P C P P F A G S Y T A R V Q M L L G P F P A R H S P V P I R R E C R C Y S D P I S L P A I R R F L Y G E S A D A T R T . . . . . . 139999 CCATCACTGCCGAGTTTGACTACCGCTGGCAGATAGTGAAGGATGGACAGTTCCTGCGAG P S L P S L T T A G R - - R M D S S C E H H C R V - L P L A D S E G W T V P A R P I T A E F D Y R W Q I V K D G Q F L R . . . . . . 139939 AGCCAGCACTGAGGGAGACCACCAAGCGGTGGATGGCCCTGCACTTATCAGTCGACGGAG S Q H - G R P P S G G W P C T Y Q S T E A S T E G D H Q A V D G P A L I S R R R E P A L R E T T K R W M A L H L S V D G . . . . . . 139879 AGGGTGTCGATTGGGTCACCGAGCCCAAGGGGGCCATCAAGAAGGCCAACCTCACGTTCG R V S I G S P S P R G P S R R P T S R S G C R L G H R A Q G G H Q E G Q P H V R E G V D W V T E P K G A I K K A N L T F . . . . . . 139819 TCGCCAAGTTCTTGTGGTTGCTCGTGCGTCACTGCCTTTCCCCCACAGCTGCTAATAACA S P S S C G C S C V T A F P P Q L L I T R Q V L V V A R A S L P F P H S C - - H V A K F L W L L V R H C L S P T A A N N . . . . . . 139759 TAGTCACCTGGGATCGAGCAGTGCTGATGGCGGCGATGATAGCCGGCTTCGAGGTGGACT - S P G I E Q C - W R R - - P A S R W T S H L G S S S A D G G D D S R L R G G L I V T W D R A V L M A A M I A G F E V D . . . . . . 139699 ATGCATGGCTTCTCTAGGCAGGCATGCACGAGAGGGCATTCAAGGTCACTACCAC M H G F S R Q A C T R G H S R S L P C M A S L G R H A R E G I Q G H Y H Y A W L L - A G M H E R A F K V T T Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1-_PGL-17_AGS-6_PPS_1 (140357 139683) (frame '0'; 672 bp, 224 residues) 1 FQVYSDAKFL TDKGVMTRKL ILERRVPTGS LLSMPEIHNT FTRHRLEWTA RPLGRYSEEM 61 VQEFYASYVA NLRSQIDRRT APAKQSPLEQ VLVRGVQVDI SLPAIRRFLY GESADATRTP 121 ITAEFDYRWQ IVKDGQFLRE PALRETTKRW MALHLSVDGE GVDWVTEPKG AIKKANLTFV 181 AKFLWLLVRH CLSPTAANNI VTWDRAVLMA AMIAGFEVDY AWLL- 3-phase translation of AGS-6 (+strand): . . . . . . 139645 GTGGTAGTGACCTTGAATGCCCTCTCGTGCATGCCTGCCTAGAGAAGCCATGCATAGTCC V V V T L N A L S C M P A - R S H A - S W - - P - M P S R A C L P R E A M H S P G S D L E C P L V H A C L E K P C I V . . . . . . 139705 ACCTCGAAGCCGGCTATCATCGCCGCCATCAGCACTGCTCGATCCCAGGTGACTATGTTA T S K P A I I A A I S T A R S Q V T M L P R S R L S S P P S A L L D P R - L C Y H L E A G Y H R R H Q H C S I P G D Y V . . . . . . 139765 TTAGCAGCTGTGGGGGAAAGGCAGTGACGCACGAGCAACCACAAGAACTTGGCGACGAAC L A A V G E R Q - R T S N H K N L A T N - Q L W G K G S D A R A T T R T W R R T I S S C G G K A V T H E Q P Q E L G D E . . . . . . 139825 GTGAGGTTGGCCTTCTTGATGGCCCCCTTGGGCTCGGTGACCCAATCGACACCCTCTCCG V R L A F L M A P L G S V T Q S T P S P - G W P S - W P P W A R - P N R H P L R R E V G L L D G P L G L G D P I D T L S . . . . . . 139885 TCGACTGATAAGTGCAGGGCCATCCACCGCTTGGTGGTCTCCCTCAGTGCTGGCTCTCGC S T D K C R A I H R L V V S L S A G S R R L I S A G P S T A W W S P S V L A L A V D - - V Q G H P P L G G L P Q C W L S . . . . . . 139945 AGGAACTGTCCATCCTTCACTATCTGCCAGCGGTAGTCAAACTCGGCAGTGATGGGGGTC R N C P S F T I C Q R - S N S A V M G V G T V H P S L S A S G S Q T R Q - W G S Q E L S I L H Y L P A V V K L G S D G G . . . . . . 140005 CGAGTAGCATCTGCACTCTCGCCGTATAGGAACCGGCGAATGGCGGGCAGGGAAATGTCA R V A S A L S P Y R N R R M A G R E M S E - H L H S R R I G T G E W R A G K C Q P S S I C T L A V - E P A N G G Q G N V . . . . . . 140065 ACCTGCACACCCCGGACTAGAACCTGCTCCAATGGGGACTGTTTAGCGGGAGCAGTCCGC T C T P R T R T C S N G D C L A G A V R P A H P G L E P A P M G T V - R E Q S A N L H T P D - N L L Q W G L F S G S S P . . . . . . 140125 CTGTCGATCTGTGATCGGAGATTCGCTACGTAGGACGCGTAGAACTCTTGGACCATCTCC L S I C D R R F A T - D A - N S W T I S C R S V I G D S L R R T R R T L G P S P P V D L - S E I R Y V G R V E L L D H L . . . . . . 140185 TCGCTGTATCGTCCCAACGGACGGGCTGTCCACTCTAAGCGATGCCTGGTGAATGTGTTG S L Y R P N G R A V H S K R C L V N V L R C I V P T D G L S T L S D A W - M C C L A V S S Q R T G C P L - A M P G E C V . . . . . . 140245 TGGATCTCCGGCATCGAGAGGAGACTTCCTGTAGGTACCCGTCGCTCCAGGATGAGTTTT W I S G I E R R L P V G T R R S R M S F G S P A S R G D F L - V P V A P G - V F V D L R H R E E T S C R Y P S L Q D E F . . . . . . 140305 CGAGTCATTACTCCTTTATCGGTCAAGAACTTCGCGTCTGAGTAAACTTGAAACT R V I T P L S V K N F A S E - T - N E S L L L Y R S R T S R L S K L E T S S H Y S F I G Q E L R V - V N L K Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1+_PGL-17_AGS-6_PPS_1 (139647 139892) (frame '0'; 243 bp, 81 residues) 1 GSDLECPLVH ACLEKPCIVH LEAGYHRRHQ HCSIPGDYVI SSCGGKAVTH EQPQELGDER 61 EVGLLDGPLG LGDPIDTLSV D- PGL 18 (- strand): 142499 141909 AGS-1 (142499 141909) SCR (e 0.838) Exon 1 142499 141909 ( 591 n); score: 0.838 PGS (142499 141909) SGN-E350708+ 3-phase translation of AGS-1 (-strand): . . . . . . 142499 GGAGATTTGGTACTTGTAGACAGTTCTGGGGTGCCTTGTCTTCCAGGCAGGCTCAAGATC G D L V L V D S S G V P C L P G R L K I E I W Y L - T V L G C L V F Q A G S R S R F G T C R Q F W G A L S S R Q A Q D . . . . . . 142439 AAATGGACTGGCCCTTACTTGATTACCCAAGTATTCCCTCATGGGGCAGTTGAGTTAAAA K W T G P Y L I T Q V F P H G A V E L K N G L A L T - L P K Y S L M G Q L S - K Q M D W P L L D Y P S I P S W G S - V K . . . . . . 142379 GCCAAGGAGGGAGTGCGGTTTAAGAAGAATAGAGATAGAATAAAACTCTATTTTGGGCAT A K E G V R F K K N R D R I K L Y F G H P R R E C G L R R I E I E - N S I L G I S Q G G S A V - E E - R - N K T L F W A . . . . . . 142319 AGAGCATCGGGGAATAAAGTGATAGTGGCATGCCATCTTGATGAAGTCTGAGTAATCAAG R A S G N K V I V A C H L D E V - V I K E H R G I K - - W H A I L M K S E - S S - S I G E - S D S G M P S - - S L S N Q . . . . . . 142259 TGTACCCAGTCGTGCCGCGACATTAAATCTGGCGCTTGTTGGGAGGCAACCCAATACTTA C T Q S C R D I K S G A C W E A T Q Y L V P S R A A T L N L A L V G R Q P N T Y V Y P V V P R H - I W R L L G G N P I L . . . . . . 142199 TCGTCTTTTTAATAATGGTAGCATTTTTTCTATAAATGGGTTTTAAATTTGCAGGCACAT S S F - - W - H F F Y K W V L N L Q A H R L F N N G S I F S I N G F - I C R H I I V F L I M V A F F L - M G F K F A G T . . . . . . 142139 CACCAGGAAATTCTGCAGAAAACTACTCCGCAGTAGCCACTGACGGATACAACGACGGAC H Q E I L Q K T T P Q - P L T D T T T D T R K F C R K L L R S S H - R I Q R R T S P G N S A E N Y S A V A T D G Y N D G . . . . . . 142079 CGTTGCACATGCAACGGACCGTCGTAGGCATCTGTCACACCAGGTACGTATTTCTGTCAC R C T C N G P S - A S V T P G T Y F C H V A H A T D R R R H L S H Q V R I S V T P L H M Q R T V V G I C H T R Y V F L S . . . . . . 142019 TTTGAATATTAGGGCACACACGACGGAACCTACGACGGGGCGTCACAAGTGTGACGGACC F E Y - G T H D G T Y D G A S Q V - R T L N I R A H T T E P T T G R H K C D G P L - I L G H T R R N L R R G V T S V T D . . . . . . 141959 GTCATCAGGGAACCGTCGCGCGATTAATGAAATCTACCCGACCCGACTCGG V I R E P S R D - - N L P D P T R S S G N R R A I N E I Y P T R L R H Q G T V A R L M K S T R P D S Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1-_PGL-18_AGS-1_PPS_1 (142499 142269) (frame '1'; 228 bp, 76 residues) 1 GDLVLVDSSG VPCLPGRLKI KWTGPYLITQ VFPHGAVELK AKEGVRFKKN RDRIKLYFGH 61 RASGNKVIVA CHLDEV- 3-phase translation of AGS-1 (+strand): . . . . . . 141909 CCGAGTCGGGTCGGGTAGATTTCATTAATCGCGCGACGGTTCCCTGATGACGGTCCGTCA P S R V G - I S L I A R R F P D D G P S R V G S G R F H - S R D G S L M T V R H E S G R V D F I N R A T V P - - R S V . . . . . . 141969 CACTTGTGACGCCCCGTCGTAGGTTCCGTCGTGTGTGCCCTAATATTCAAAGTGACAGAA H L - R P V V G S V V C A L I F K V T E T C D A P S - V P S C V P - Y S K - Q K T L V T P R R R F R R V C P N I Q S D R . . . . . . 142029 ATACGTACCTGGTGTGACAGATGCCTACGACGGTCCGTTGCATGTGCAACGGTCCGTCGT I R T W C D R C L R R S V A C A T V R R Y V P G V T D A Y D G P L H V Q R S V V N T Y L V - Q M P T T V R C M C N G P S . . . . . . 142089 TGTATCCGTCAGTGGCTACTGCGGAGTAGTTTTCTGCAGAATTTCCTGGTGATGTGCCTG C I R Q W L L R S S F L Q N F L V M C L V S V S G Y C G V V F C R I S W - C A C L Y P S V A T A E - F S A E F P G D V P . . . . . . 142149 CAAATTTAAAACCCATTTATAGAAAAAATGCTACCATTATTAAAAAGACGATAAGTATTG Q I - N P F I E K M L P L L K R R - V L K F K T H L - K K C Y H Y - K D D K Y W A N L K P I Y R K N A T I I K K T I S I . . . . . . 142209 GGTTGCCTCCCAACAAGCGCCAGATTTAATGTCGCGGCACGACTGGGTACACTTGATTAC G C L P T S A R F N V A A R L G T L D Y V A S Q Q A P D L M S R H D W V H L I T G L P P N K R Q I - C R G T T G Y T - L . . . . . . 142269 TCAGACTTCATCAAGATGGCATGCCACTATCACTTTATTCCCCGATGCTCTATGCCCAAA S D F I K M A C H Y H F I P R C S M P K Q T S S R W H A T I T L F P D A L C P K L R L H Q D G M P L S L Y S P M L Y A Q . . . . . . 142329 ATAGAGTTTTATTCTATCTCTATTCTTCTTAAACCGCACTCCCTCCTTGGCTTTTAACTC I E F Y S I S I L L K P H S L L G F - L - S F I L S L F F L N R T P S L A F N S N R V L F Y L Y S S - T A L P P W L L T . . . . . . 142389 AACTGCCCCATGAGGGAATACTTGGGTAATCAAGTAAGGGCCAGTCCATTTGATCTTGAG N C P M R E Y L G N Q V R A S P F D L E T A P - G N T W V I K - G P V H L I L S Q L P H E G I L G - S S K G Q S I - S - . . . . . . 142449 CCTGCCTGGAAGACAAGGCACCCCAGAACTGTCTACAAGTACCAAATCTCC P A W K T R H P R T V Y K Y Q I S L P G R Q G T P E L S T S T K S A C L E D K A P Q N C L Q V P N L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 19 (- strand): 144625 144040 AGS-1 (144625 144040) SCR (e 0.886) Exon 1 144625 144040 ( 586 n); score: 0.886 PGS (144625 144040) SGN-E351864- 3-phase translation of AGS-1 (-strand): . . . . . . 144625 TTTATGGTAACTAGTAGTCTGATGCAAATGCTCACTGCCAGAGGTTTGTTTTCAGGGCTA F M V T S S L M Q M L T A R G L F S G L L W - L V V - C K C S L P E V C F Q G Y Y G N - - S D A N A H C Q R F V F R A . . . . . . 144565 CCTTCTGAGGATCCACATGCCCATATAGCTAAGGTAAGGGCAGTGTGTAAAAGTTGTGTG P S E D P H A H I A K V R A V C K S C V L L R I H M P I - L R - G Q C V K V V W T F - G S T C P Y S - G K G S V - K L C . . . . . . 144505 GGGAGGCCTGATTTGGATCTAGATGTAATAGGTCTCAGAGTGTTTCCTCTCTCACTGACG G R P D L D L D V I G L R V F P L S L T G G L I W I - M - - V S E C F L S H - R G E A - F G S R C N R S Q S V S S L T D . . . . . . 144445 GGAGAGGCTGCTATGTGGTTTACTGAGCTCCCATACAACTCCATTTTCACTTGGAACCAA G E A A M W F T E L P Y N S I F T W N Q E R L L C G L L S S H T T P F S L G T N G R G C Y V V Y - A P I Q L H F H L E P . . . . . . 144385 CTACGGGATGTCTTCTTAGCACGCTACTATCCGGTCTCCAAGAAATTAATCCACAAAGAC L R D V F L A R Y Y P V S K K L I H K D Y G M S S - H A T I R S P R N - S T K T T T G C L L S T L L S G L Q E I N P Q R . . . . . . 144325 AGGGTGAATAACTTTGTGGCACTACCAAGAGAGTCAGTTAGTAGTTCTTGGGATAAATTC R V N N F V A L P R E S V S S S W D K F G - I T L W H Y Q E S Q L V V L G I N S Q G E - L C G T T K R V S - - F L G - I . . . . . . 144265 ACCTCATTCTTGAGAAGTGTCCCAAATCACCGTATTAATGATGAGTCACTAAAGGAATAC T S F L R S V P N H R I N D E S L K E Y P H S - E V S Q I T V L M M S H - R N T H L I L E K C P K S P Y - - - V T K G I . . . . . . 144205 TTCTATAGGGGACAGGATGATAACAATAAAGCGGTGTTGGACACTATAGCAGGTGGATCT F Y R G Q D D N N K A V L D T I A G G S S I G D R M I T I K R C W T L - Q V D L L L - G T G - - Q - S G V G H Y S R W I . . . . . . 144145 TATGGAGAATGTCGTTATGCTGAGATTGCTGAGAAATTAGAGAAAATCTCCCGTAACAAA Y G E C R Y A E I A E K L E K I S R N K M E N V V M L R L L R N - R K S P V T K L W R M S L C - D C - E I R E N L P - Q . . . . . 144085 AAAGCTTGGAGTACGAGGAAGTCCGATACAAGGAGAAACACCTTCG K A W S T R K S D T R R N T F K L G V R G S P I Q G E T P S K S L E Y E E V R Y K E K H L Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1-_PGL-19_AGS-1_PPS_1 (144625 144041) (frame '1'; 585 bp, 195 residues) 1 FMVTSSLMQM LTARGLFSGL PSEDPHAHIA KVRAVCKSCV GRPDLDLDVI GLRVFPLSLT 61 GEAAMWFTEL PYNSIFTWNQ LRDVFLARYY PVSKKLIHKD RVNNFVALPR ESVSSSWDKF 121 TSFLRSVPNH RINDESLKEY FYRGQDDNNK AVLDTIAGGS YGECRYAEIA EKLEKISRNK 181 KAWSTRKSDT RRNTF 3-phase translation of AGS-1 (+strand): . . . . . . 144040 CGAAGGTGTTTCTCCTTGTATCGGACTTCCTCGTACTCCAAGCTTTTTTGTTACGGGAGA R R C F S L Y R T S S Y S K L F C Y G R E G V S P C I G L P R T P S F F V T G D K V F L L V S D F L V L Q A F L L R E . . . . . . 144100 TTTTCTCTAATTTCTCAGCAATCTCAGCATAACGACATTCTCCATAAGATCCACCTGCTA F S L I S Q Q S Q H N D I L H K I H L L F L - F L S N L S I T T F S I R S T C Y I F S N F S A I S A - R H S P - D P P A . . . . . . 144160 TAGTGTCCAACACCGCTTTATTGTTATCATCCTGTCCCCTATAGAAGTATTCCTTTAGTG - C P T P L Y C Y H P V P Y R S I P L V S V Q H R F I V I I L S P I E V F L - - I V S N T A L L L S S C P L - K Y S F S . . . . . . 144220 ACTCATCATTAATACGGTGATTTGGGACACTTCTCAAGAATGAGGTGAATTTATCCCAAG T H H - Y G D L G H F S R M R - I Y P K L I I N T V I W D T S Q E - G E F I P R D S S L I R - F G T L L K N E V N L S Q . . . . . . 144280 AACTACTAACTGACTCTCTTGGTAGTGCCACAAAGTTATTCACCCTGTCTTTGTGGATTA N Y - L T L L V V P Q S Y S P C L C G L T T N - L S W - C H K V I H P V F V D - E L L T D S L G S A T K L F T L S L W I . . . . . . 144340 ATTTCTTGGAGACCGGATAGTAGCGTGCTAAGAAGACATCCCGTAGTTGGTTCCAAGTGA I S W R P D S S V L R R H P V V G S K - F L G D R I V A C - E D I P - L V P S E N F L E T G - - R A K K T S R S W F Q V . . . . . . 144400 AAATGGAGTTGTATGGGAGCTCAGTAAACCACATAGCAGCCTCTCCCGTCAGTGAGAGAG K W S C M G A Q - T T - Q P L P S V R E N G V V W E L S K P H S S L S R Q - E R K M E L Y G S S V N H I A A S P V S E R . . . . . . 144460 GAAACACTCTGAGACCTATTACATCTAGATCCAAATCAGGCCTCCCCACACAACTTTTAC E T L - D L L H L D P N Q A S P H N F Y K H S E T Y Y I - I Q I R P P H T T F T G N T L R P I T S R S K S G L P T Q L L . . . . . . 144520 ACACTGCCCTTACCTTAGCTATATGGGCATGTGGATCCTCAGAAGGTAGCCCTGAAAACA T L P L P - L Y G H V D P Q K V A L K T H C P Y L S Y M G M W I L R R - P - K Q H T A L T L A I W A C G S S E G S P E N . . . . . 144580 AACCTCTGGCAGTGAGCATTTGCATCAGACTACTAGTTACCATAAA N L W Q - A F A S D Y - L P - T S G S E H L H Q T T S Y H K K P L A V S I C I R L L V T I Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1+_PGL-19_AGS-1_PPS_1 (144363 144623) (frame '0'; 261 bp, 87 residues) 1 RAKKTSRSWF QVKMELYGSS VNHIAASPVS ERGNTLRPIT SRSKSGLPTQ LLHTALTLAI 61 WACGSSEGSP ENKPLAVSIC IRLLVTI PGL 20 (- strand): 147103 145147 AGS-1 (146562 146258,146208 145147) SCR (e 0.822 d 0.000 a 0.000,e 0.843) Exon 1 146562 146258 ( 305 n); score: 0.822 Intron 1 146257 146209 ( 49 n); Pd: 0.000 Pa: 0.000 Exon 2 146208 145147 (1062 n); score: 0.843 PGS (145832 145147) SGN-E241731- PGS (146231 145675) SGN-E550629- PGS (146231 145675) SGN-E550645- PGS (145978 145676) SGN-E273427- PGS (146498 146258,146208 145925) SGN-E546250- PGS (146498 146258,146208 146153) SGN-E546251+ PGS (146562 146343) SGN-E356584- 3-phase translation of AGS-1 (-strand): . . . . . . 146562 AGTTTAGTGTGTCCGAAAGCCCTTTTTGTGCTAATTTTGATATAAGTTTCTCTTTGTTTT S L V C P K A L F V L I L I - V S L C F V - C V R K P F L C - F - Y K F L F V L F S V S E S P F C A N F D I S F S L F . . . . . . 146502 GCAGGAAATCTGTCCAAAGCTGAATGCGGAGATTTTAAGCGAAAAATGCAGAAGAGGCCA A G N L S K A E C G D F K R K M Q K R P Q E I C P K L N A E I L S E K C R R G H C R K S V Q S - M R R F - A K N A E E A . . . . . . 146442 CCTACGGAGCTTATGACGGTCCGTCGTGCCTGTGACAGTCCGTAGGTGGCAGCGTAGAGA P T E L M T V R R A C D S P - V A A - R L R S L - R S V V P V T V R R W Q R R E T Y G A Y D G P S C L - Q S V G G S V E . . . . . . 146382 AGCTGCTGAAGGAAGATAGGGAAGTCTGACCAAGTGTGGGATTACGAAGCTTGTGACGGT S C - R K I G K S D Q V W D Y E A C D G A A E G R - G S L T K C G I T K L V T V K L L K E D R E V - P S V G L R S L - R . . . . . . 146322 CAGTCATGGCTATGACGGTCCGTCCTGCAGGTACATCGTGAAGATCAGAGAAGTGATCCC Q S W L - R S V L Q V H R E D Q R S D P S H G Y D G P S C R Y I V K I R E V I P S V M A M T V R P A G T S - R S E K - S . : . . . . . 146262 AGTAC : TTGTGCTTATGACGGTCCGTCACACTTGCCGTCGAGGGAAATGAAGAAAGCAGCA S T : C A Y D G P S H L P S R E M K K A A V : L V L M T V R H T C R R G K - R K Q Q Q Y : L C L - R S V T L A V E G N E E S S . . . . . . 146153 GAAGAATTGCACCAAGTATGGGACGACGGAGTCCACGACGGTCCGTCATGACCACGACGG E E L H Q V W D D G V H D G P S - P R R K N C T K Y G T T E S T T V R H D H D G R R I A P S M G R R S P R R S V M T T T . . . . . . 146093 TCCATCGCGTAGTCCGTCGACCCAGCCGCGTTTTGGCAGATTTCCAGTAATTAGAATCCT S I A - S V D P A A F W Q I S S N - N P P S R S P S T Q P R F G R F P V I R I L V H R V V R R P S R V L A D F Q - L E S . . . . . . 146033 TGTTTAATTAGGTTTTTATTTTTTTATAAATAGTTCAAAAAACCTCGTTTTTTAGGTTAG C L I R F L F F Y K - F K K P R F L G - V - L G F Y F F I N S S K N L V F - V R L F N - V F I F L - I V Q K T S F F R L . . . . . . 145973 ACTCTGTGATATTAAACCTTATATTGCTAGACTTGTGTTTGGAGTGTTTGATTGTTAGAG T L - Y - T L Y C - T C V W S V - L L E L C D I K P Y I A R L V F G V F D C - R D S V I L N L I L L D L C L E C L I V R . . . . . . 145913 ATTCTTACAAGTGATTTTTGGTGATTAATCAAGCAAATTTTCGGACTTTATTCTTTCTCA I L T S D F W - L I K Q I F G L Y S F S F L Q V I F G D - S S K F S D F I L S H D S Y K - F L V I N Q A N F R T L F F L . . . . . . 145853 TTGAAGTAAGTACATGAATTCTTGTTTACCATATTTGAATATTGTGTTTATGGCTATGAG L K - V H E F L F T I F E Y C V Y G Y E - S K Y M N S C L P Y L N I V F M A M R I E V S T - I L V Y H I - I L C L W L - . . . . . . 145793 GAACTAAACTCCATAACTAGGGTTGTGGGAACCATAGGCAAATAATGAGATAAACCCTAG E L N S I T R V V G T I G K - - D K P - N - T P - L G L W E P - A N N E I N P S G T K L H N - G C G N H R Q I M R - T L . . . . . . 145733 CTAAAATAACAATTCTAGAATCGTGTCTTGCATGTATTAATAATTCTTTCGCTTAGAAGT L K - Q F - N R V L H V L I I L S L R S - N N N S R I V S C M Y - - F F R L E V A K I T I L E S C L A C I N N S F A - K . . . . . . 145673 CTTTTTAACGGATGATCAACGTTAGAACTCGCCTTAATGCTACTTGCCGGACCAAGGAGG L F N G - S T L E L A L M L L A G P R R F L T D D Q R - N S P - C Y L P D Q G G S F - R M I N V R T R L N A T C R T K E . . . . . . 145613 TAGATAATAGGAAAAGAATTATTAACATAGATTTAGTGTATACTATCTAATAGGCTAGTA - I I G K E L L T - I - C I L S N R L V R - - E K N Y - H R F S V Y Y L I G - Y V D N R K R I I N I D L V Y T I - - A S . . . . . . 145553 TTGATTGGTACGAGGTAATAACTTAGTCAAATATCGAATACGATGCTTAATATGAGGTAA L I G T R - - L S Q I S N T M L N M R - - L V R G N N L V K Y R I R C L I - G K I D W Y E V I T - S N I E Y D A - Y E V . . . . . . 145493 GGATAAGGGTTAGGAAAGCAACACACGTAGCCGGACCAAGGTGCGGAGTGAGATTTTCTA G - G L G K Q H T - P D Q G A E - D F L D K G - E S N T R S R T K V R S E I F - R I R V R K A T H V A G P R C G V R F S . . . . . . 145433 GGTGCCGGACCAAGGATTTAGAAATACATAACTTATCACTTTGCATGCAAGATACTAGGA G A G P R I - K Y I T Y H F A C K I L G V P D Q G F R N T - L I T L H A R Y - E R C R T K D L E I H N L S L C M Q D T R . . . . . . 145373 AAGAATTGTTATAGTTAGAATTATCAAGTTATAAACCTGTGGGGAACACGTAAACCCTAG K N C Y S - N Y Q V I N L W G T R K P - R I V I V R I I K L - T C G E H V N P S K E L L - L E L S S Y K P V G N T - T L . . . . . . 145313 TTACTTTGATTACTTGACTAAAACTCAACATTAAAAGCTGTTAAGTGTCTCTTTCAAGTT L L - L L D - N S T L K A V K C L F Q V Y F D Y L T K T Q H - K L L S V S F K F V T L I T - L K L N I K S C - V S L S S . . . . . . 145253 CGTTAGTTATTTTTGCTCATTAGGAAATACAAACCCCCCTTTTATGATTTTACTTTCTAA R - L F L L I R K Y K P P F Y D F T F - V S Y F C S L G N T N P P F M I L L S K S L V I F A H - E I Q T P L L - F Y F L . . . . . 145193 GGAAGTCATCAACCGAACAATAGTAATAACAAGTTGAAGTTAAGTCT G S H Q P N N S N N K L K L S E V I N R T I V I T S - S - V R K S S T E Q - - - Q V E V K S Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (146615 145940) SCR (e 0.934) Exon 1 146615 145940 ( 676 n); score: 0.934 PGS (146415 145940) SGN-E349968+ PGS (146498 145942) SGN-E261921+ PGS (146498 145942) SGN-E369291+ PGS (146498 145942) SGN-E369290- PGS (146498 145945) SGN-E546025- PGS (146498 146030) SGN-E322644+ PGS (146607 146059) SGN-E346859+ PGS (146615 146085) SGN-E286708- PGS (146605 146085) SGN-E540293- PGS (146498 146097) SGN-E258752+ PGS (146586 146107) SGN-E243969- PGS (146498 146131) SGN-E255290+ PGS (146498 146189) SGN-E258181+ PGS (146606 146217) SGN-E578039- PGS (146605 146225) SGN-E577891- 3-phase translation of AGS-2 (-strand): . . . . . . 146615 GGATTAGTATTGATATACCGTGGTTTCACGGTATAATTAATACTTTTTCCTTAAGTTTAG G L V L I Y R G F T V - L I L F P - V - D - Y - Y T V V S R Y N - Y F F L K F S I S I D I P W F H G I I N T F S L S L . . . . . . 146555 TGTGTCCGAAAGCCCTTTTTGTGCTAATTTTGATATAAGTTTCTCTTTGTTTTGCAGGAA C V R K P F L C - F - Y K F L F V L Q E V S E S P F C A N F D I S F S L F C R K V C P K A L F V L I L I - V S L C F A G . . . . . . 146495 ATCTGTCCAAAGCTGAATGCGGAGATTTTAAGCGAAAAATGCAGAAGAGGCCACCTACGG I C P K L N A E I L S E K C R R G H L R S V Q S - M R R F - A K N A E E A T Y G N L S K A E C G D F K R K M Q K R P P T . . . . . . 146435 AGCTTATGACGGTCCGTCGTGCCTGTGACAGTCCGTAGGTGGCAGCGTAGAGAAGCTGCT S L - R S V V P V T V R R W Q R R E A A A Y D G P S C L - Q S V G G S V E K L L E L M T V R R A C D S P - V A A - R S C . . . . . . 146375 GAAGGAAGATAGGGAAGTCTGACCAAGTGTGGGATTACGAAGCTTGTGACGGTCAGTCAT E G R - G S L T K C G I T K L V T V S H K E D R E V - P S V G L R S L - R S V M - R K I G K S D Q V W D Y E A C D G Q S . . . . . . 146315 GGCTATGACGGTCCGTCCTGCAGGTACATCGTGAAGATCAGAGAAGTGATCCCAGTACCA G Y D G P S C R Y I V K I R E V I P V P A M T V R P A G T S - R S E K - S Q Y Q W L - R S V L Q V H R E D Q R S D P S T . . . . . . 146255 AGATTCCAAGATTTGAAGTATTTTGAAACGAGACCCTCGATGAACCGTTGTGCTTATGAC R F Q D L K Y F E T R P S M N R C A Y D D S K I - S I L K R D P R - T V V L M T K I P R F E V F - N E T L D E P L C L - . . . . . . 146195 GGTCCGTCACACTTGCCGTCGAGGGAAATGAAGAAAGCAGCAGAAGAATTGCACCAAGTA G P S H L P S R E M K K A A E E L H Q V V R H T C R R G K - R K Q Q K N C T K Y R S V T L A V E G N E E S S R R I A P S . . . . . . 146135 TGGGACGACGGAGTCCACGACGGTCCGTCATGACCACGACGGTCCATCGCGTAGTCCGTC W D D G V H D G P S - P R R S I A - S V G T T E S T T V R H D H D G P S R S P S M G R R S P R R S V M T T T V H R V V R . . . . . . 146075 GACCCAGCCGCGTTTTGGCAGATTTCCAGTAATTAGAATCCTTGTTTAATTAGGTTTTTA D P A A F W Q I S S N - N P C L I R F L T Q P R F G R F P V I R I L V - L G F Y R P S R V L A D F Q - L E S L F N - V F . . . . . . 146015 TTTTTTTATAAATAGTTCAAAAAACCTCGTTTTTTAGGTTAGACTCTGTGATATTAAACC F F Y K - F K K P R F L G - T L - Y - T F F I N S S K N L V F - V R L C D I K P I F L - I V Q K T S F F R L D S V I L N . . 145955 TTATATTGCTAGACTT L Y C - T Y I A R L L I L L D Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1-_PGL-20_AGS-2_PPS_1 (146363 146103) (frame '1'; 258 bp, 86 residues) 1 GSLTKCGITK LVTVSHGYDG PSCRYIVKIR EVIPVPRFQD LKYFETRPSM NRCAYDGPSH 61 LPSREMKKAA EELHQVWDDG VHDGPS- 3-phase translation of AGS-2 (+strand): . . . . . . 145940 AAGTCTAGCAATATAAGGTTTAATATCACAGAGTCTAACCTAAAAAACGAGGTTTTTTGA K S S N I R F N I T E S N L K N E V F - S L A I - G L I S Q S L T - K T R F F E V - Q Y K V - Y H R V - P K K R G F L . . . . . . 146000 ACTATTTATAAAAAAATAAAAACCTAATTAAACAAGGATTCTAATTACTGGAAATCTGCC T I Y K K I K T - L N K D S N Y W K S A L F I K K - K P N - T R I L I T G N L P N Y L - K N K N L I K Q G F - L L E I C . . . . . . 146060 AAAACGCGGCTGGGTCGACGGACTACGCGATGGACCGTCGTGGTCATGACGGACCGTCGT K T R L G R R T T R W T V V V M T D R R K R G W V D G L R D G P S W S - R T V V Q N A A G S T D Y A M D R R G H D G P S . . . . . . 146120 GGACTCCGTCGTCCCATACTTGGTGCAATTCTTCTGCTGCTTTCTTCATTTCCCTCGACG G L R R P I L G A I L L L L S S F P S T D S V V P Y L V Q F F C C F L H F P R R W T P S S H T W C N S S A A F F I S L D . . . . . . 146180 GCAAGTGTGACGGACCGTCATAAGCACAACGGTTCATCGAGGGTCTCGTTTCAAAATACT A S V T D R H K H N G S S R V S F Q N T Q V - R T V I S T T V H R G S R F K I L G K C D G P S - A Q R F I E G L V S K Y . . . . . . 146240 TCAAATCTTGGAATCTTGGTACTGGGATCACTTCTCTGATCTTCACGATGTACCTGCAGG S N L G I L V L G S L L - S S R C T C R Q I L E S W Y W D H F S D L H D V P A G F K S W N L G T G I T S L I F T M Y L Q . . . . . . 146300 ACGGACCGTCATAGCCATGACTGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGAC T D R H S H D - P S Q A S - S H T W S D R T V I A M T D R H K L R N P T L G Q T D G P S - P - L T V T S F V I P H L V R . . . . . . 146360 TTCCCTATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGACTGTCACAGGCACGA F P I F L Q Q L L Y A A T Y G L S Q A R S L S S F S S F S T L P P T D C H R H D L P Y L P S A A S L R C H L R T V T G T . . . . . . 146420 CGGACCGTCATAAGCTCCGTAGGTGGCCTCTTCTGCATTTTTCGCTTAAAATCTCCGCAT R T V I S S V G G L F C I F R L K S P H G P S - A P - V A S S A F F A - N L R I T D R H K L R R W P L L H F S L K I S A . . . . . . 146480 TCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAA S A L D R F P A K Q R E T Y I K I S T K Q L W T D F L Q N K E K L I S K L A Q K F S F G Q I S C K T K R N L Y Q N - H K . . . . . . 146540 AGGGCTTTCGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACGGT R A F G H T K L K E K V L I I P - N H G G L S D T L N L R K K Y - L Y R E T T V K G F R T H - T - G K S I N Y T V K P R . . 146600 ATATCAATACTAATCC I S I L I Y Q Y - S Y I N T N Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0031H05.1+_PGL-20_AGS-2_PPS_1 (146027 146278) (frame '1'; 249 bp, 83 residues) 1 LNKDSNYWKS AKTRLGRRTT RWTVVVMTDR RGLRRPILGA ILLLLSSFPS TASVTDRHKH 61 NGSSRVSFQN TSNLGILVLG SLL- >C04HBa0031H05.1+_PGL-20_AGS-2_PPS_2 (146342 146590) (frame '1'; 246 bp, 82 residues) 1 SHTWSDFPIF LQQLLYAATY GLSQARRTVI SSVGGLFCIF RLKSPHSALD RFPAKQRETY 61 IKISTKRAFG HTKLKEKVLI IP- >C04HBa0031H05.1+_PGL-20_AGS-2_PPS_3 (146190 146432) (frame '2'; 240 bp, 80 residues) 1 RTVISTTVHR GSRFKILQIL ESWYWDHFSD LHDVPAGRTV IAMTDRHKLR NPTLGQTSLS 61 SFSSFSTLPP TDCHRHDGPS - AGS-3 (147103 146913) SCR (e 0.764) Exon 1 147103 146913 ( 191 n); score: 0.764 PGS (147103 146913) SGN-E546254- 3-phase translation of AGS-3 (-strand): . . . . . . 147103 CTAATTCTTTGATACCAACTTGGTCATGACCGGAATCTAGACCCCAGACGATATCAGCGT L I L - Y Q L G H D R N L D P R R Y Q R - F F D T N L V M T G I - T P D D I S V N S L I P T W S - P E S R P Q T I S A . . . . . . 147043 CGTTGACCTCTCTGAGGTCGCAGACAAGCCTACTTACGTCATTCTTACTTCATCTGGATT R - P L - G R R Q A Y L R H S Y F I W I V D L S E V A D K P T Y V I L T S S G L S L T S L R S Q T S L L T S F L L H L D . . . . . . 146983 AATTATAGCAGAAAATTTGAAACTTTTTGTTTCTTAACATACTAATAATTCTATTAAATT N Y S R K F E T F C F L T Y - - F Y - I I I A E N L K L F V S - H T N N S I K F - L - Q K I - N F L F L N I L I I L L N . . 146923 CATAATTTTTC H N F I I F S - F F Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (+strand): . . . . . . 146913 GAAAAATTATGAATTTAATAGAATTATTAGTATGTTAAGAAACAAAAAGTTTCAAATTTT E K L - I - - N Y - Y V K K Q K V S N F K N Y E F N R I I S M L R N K K F Q I F K I M N L I E L L V C - E T K S F K F . . . . . . 146973 CTGCTATAATTAATCCAGATGAAGTAAGAATGACGTAAGTAGGCTTGTCTGCGACCTCAG L L - L I Q M K - E - R K - A C L R P Q C Y N - S R - S K N D V S R L V C D L R S A I I N P D E V R M T - V G L S A T S . . . . . . 147033 AGAGGTCAACGACGCTGATATCGTCTGGGGTCTAGATTCCGGTCATGACCAAGTTGGTAT R G Q R R - Y R L G S R F R S - P S W Y E V N D A D I V W G L D S G H D Q V G I E R S T T L I S S G V - I P V M T K L V . . 147093 CAAAGAATTAG Q R I K E L S K N - Maximal non-overlapping open reading frames (>= 64 codons): none PGL 21 (+ strand): 150589 151169 AGS-1 (150589 150724,150829 151169) SCR (e 0.824 d 0.000 a 0.000,e 0.824) Exon 1 150589 150724 ( 136 n); score: 0.824 Intron 1 150725 150828 ( 104 n); Pd: 0.000 Pa: 0.000 Exon 2 150829 151169 ( 341 n); score: 0.824 PGS (150589 150724,150829 151169) SGN-E356167- 3-phase translation of AGS-1 (+strand): . . . . . . 150589 TCAGAGTGATTAGGGATAGTTTGGCTACTCCTTACAGTCGGCAGAAGTCTTATGCAAACA S E - L G I V W L L L T V G R S L M Q T Q S D - G - F G Y S L Q S A E V L C K Q R V I R D S L A T P Y S R Q K S Y A N . . . . . . 150649 ACAAAAAATGACCCTTAGAGTTTGATGTTTGTGACCAGATCTATTTGAAGATATCACCTA T K N D P - S L M F V T R S I - R Y H L Q K M T L R V - C L - P D L F E D I T Y N K K - P L E F D V C D Q I Y L K I S P . . : . . . . 150709 TGAAGGGGGTGATAAG : ATTCTGTTCATCTAGTCTTTCATGTCTCTATGTTAAAGAAGTGC - R G - - : D S V H L V F H V S M L K K C E G G D K : I L F I - S F M S L C - R S A M K G V I R : F C S S S L S C L Y V K E V . . . . . . 150873 TTAGGTGGTGATCCATCATCGATTCTACCGGTTAAAGTTTTGAGGGTTGATGAAAATTTG L G G D P S S I L P V K V L R V D E N L - V V I H H R F Y R L K F - G L M K I C L R W - S I I D S T G - S F E G - - K F . . . . . . 150933 TCCTATGAGGAGGTACCTGTTGAGATTTTAGACAGACAGGTCAAGCGGCTGAGGAACAAG S Y E E V P V E I L D R Q V K R L R N K P M R R Y L L R F - T D R S S G - G T R V L - G G T C - D F R Q T G Q A A E E Q . . . . . . 150993 GAGATATCCACGGTGAAGGCATTGTAGAGGAATCATCTTGTAGAGGGTGATATGTGGGAG E I S T V K A L - R N H L V E G D M W E R Y P R - R H C R G I I L - R V I C G R G D I H G E G I V E E S S C R G - Y V G . . . . . . 151053 GCCGAGGCCGATATGAGATCCCTCTACCCCCATCTTTTCAGCTCTTAAGGTTAGACTTCC A E A D M R S L Y P H L F S S - G - T S P R P I - D P S T P I F S A L K V R L P G R G R Y E I P L P P S F Q L L R L D F . . . . . . 151113 TACTCTTAAGTCTAAGTTTCCTTATCTCTCCATTCTTTGTTGCTATTGCTTGCTCGT Y S - V - V S L S L H S L L L L L A R T L K S K F P Y L S I L C C Y C L L L L L S L S F L I S P F F V A I A C S Maximal non-overlapping open reading frames (>= 64 codons): none PGL 22 (+ strand): 152986 153745 AGS-1 (152986 153531,153562 153745) SCR (e 0.801 d 0.000 a 0.000,e 0.837) Exon 1 152986 153531 ( 546 n); score: 0.801 Intron 1 153532 153561 ( 30 n); Pd: 0.000 Pa: 0.000 Exon 2 153562 153745 ( 184 n); score: 0.837 PGS (152986 153531,153562 153745) SGN-E327901+ 3-phase translation of AGS-1 (+strand): . . . . . . 152986 ATAGTCAAGGAAAATTAAATAAAAAATAAAAGGGGTTGTCGGGGTTTGAACCCACAACCC I V K E N - I K N K R G C R G L N P Q P - S R K I K - K I K G V V G V - T H N P S Q G K L N K K - K G L S G F E P T T . . . . . . 153046 CTCGGCCAAGAAAGAGAATTTACAAAGGATAGAAATAAAAAGGAAATGATGATGTTGGTG L G Q E R E F T K D R N K K E M M M L V S A K K E N L Q R I E I K R K - - C W - P R P R K R I Y K G - K - K G N D D V G . . . . . . 153106 ATCGATCTAGGGTCCCAATGTCATGTGGAATGAAATTAAATAAAAATAAAAATGTAATGT I D L G S Q C H V E - N - I K I K M - C S I - G P N V M W N E I K - K - K C N V D R S R V P M S C G M K L N K N K N V M . . . . . . 153166 GTTGCCTAAGGGATTTGAAACCAGGTTTTCTTGACCCAATTCCATATTGATACATAAGTC V A - G I - N Q V F L T Q F H I D T - V L P K G F E T R F S - P N S I L I H K S C C L R D L K P G F L D P I P Y - Y I S . . . . . . 153226 ATACGTGAATTAAATATTCAATAATAATGATGCCTACTTAGATCGAAATCAAGATCTTGG I R E L N I Q - - - C L L R S K S R S W Y V N - I F N N N D A Y L D R N Q D L G H T - I K Y S I I M M P T - I E I K I L . . . . . . 153286 CTTATATAAAAGATGCATAAGTCTTGTATCATATAATCTTAGGAAGATATGAATCACTTA L I - K M H K S C I I - S - E D M N H L L Y K R C I S L V S Y N L R K I - I T - A Y I K D A - V L Y H I I L G R Y E S L . . . . . . 153346 AACGAACTATGAGCGAAGCCTCATGACTTGTATGTATAGACCCACAAGTCTAGCATACGT N E L - A K P H D L Y V - T H K S S I R T N Y E R S L M T C M Y R P T S L A Y V K R T M S E A S - L V C I D P Q V - H T . . . . . . 153406 TTAAAAATAAGTGAACCTAAGATGTATGTAATGAAATGATGTAACCCTAGAATGGTCAAG L K I S E P K M Y V M K - C N P R M V K - K - V N L R C M - - N D V T L E W S S F K N K - T - D V C N E M M - P - N G Q . . . . . . 153466 TAAGAGTGTGTAACACTCTAAATGGCCAAGTGCATTGGCACATGATGAAATGAACAATGA - E C V T L - M A K C I G T - - N E Q - K S V - H S K W P S A L A H D E M N N E V R V C N T L N G Q V H W H M M K - T M . : . . . . . 153526 AATGAA : ATGAAACCATAGAAGGGTTAAGTAAGAGTGTGAAACACACTAAATGGCCAAGTG N E : M K P - K G - V R V - N T L N G Q V M K : - N H R R V K - E C E T H - M A K C K - : N E T I E G L S K S V K H T K W P S . . . . . . 153616 TATTGGCATATGAGGAAATGAACCTTCACGTAAAAGGGGTGAGTAATTATGAAGAAAAAA Y W H M R K - T F T - K G - V I M K K K I G I - G N E P S R K R G E - L - R K N V L A Y E E M N L H V K G V S N Y E E K . . . . . . 153676 TGTGCTAATGTTAATGAATGTGGTGACAACATGATATGAGTCTAATGTAAAAGATGAGAT C A N V N E C G D N M I - V - C K R - D V L M L M N V V T T - Y E S N V K D E I M C - C - - M W - Q H D M S L M - K M R . 153736 CAATCTTAAA Q S - N L K S I L Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (152986 153456,153574 153653) SCR (e 0.816 d 0.000 a 0.061,e 0.775) Exon 1 152986 153456 ( 471 n); score: 0.816 Intron 1 153457 153573 ( 117 n); Pd: 0.000 Pa: 0.061 Exon 2 153574 153653 ( 80 n); score: 0.775 PGS (152986 153456,153574 153653) SGN-E328085+ 3-phase translation of AGS-2 (+strand): . . . . . . 152986 ATAGTCAAGGAAAATTAAATAAAAAATAAAAGGGGTTGTCGGGGTTTGAACCCACAACCC I V K E N - I K N K R G C R G L N P Q P - S R K I K - K I K G V V G V - T H N P S Q G K L N K K - K G L S G F E P T T . . . . . . 153046 CTCGGCCAAGAAAGAGAATTTACAAAGGATAGAAATAAAAAGGAAATGATGATGTTGGTG L G Q E R E F T K D R N K K E M M M L V S A K K E N L Q R I E I K R K - - C W - P R P R K R I Y K G - K - K G N D D V G . . . . . . 153106 ATCGATCTAGGGTCCCAATGTCATGTGGAATGAAATTAAATAAAAATAAAAATGTAATGT I D L G S Q C H V E - N - I K I K M - C S I - G P N V M W N E I K - K - K C N V D R S R V P M S C G M K L N K N K N V M . . . . . . 153166 GTTGCCTAAGGGATTTGAAACCAGGTTTTCTTGACCCAATTCCATATTGATACATAAGTC V A - G I - N Q V F L T Q F H I D T - V L P K G F E T R F S - P N S I L I H K S C C L R D L K P G F L D P I P Y - Y I S . . . . . . 153226 ATACGTGAATTAAATATTCAATAATAATGATGCCTACTTAGATCGAAATCAAGATCTTGG I R E L N I Q - - - C L L R S K S R S W Y V N - I F N N N D A Y L D R N Q D L G H T - I K Y S I I M M P T - I E I K I L . . . . . . 153286 CTTATATAAAAGATGCATAAGTCTTGTATCATATAATCTTAGGAAGATATGAATCACTTA L I - K M H K S C I I - S - E D M N H L L Y K R C I S L V S Y N L R K I - I T - A Y I K D A - V L Y H I I L G R Y E S L . . . . . . 153346 AACGAACTATGAGCGAAGCCTCATGACTTGTATGTATAGACCCACAAGTCTAGCATACGT N E L - A K P H D L Y V - T H K S S I R T N Y E R S L M T C M Y R P T S L A Y V K R T M S E A S - L V C I D P Q V - H T . . . . . . : 153406 TTAAAAATAAGTGAACCTAAGATGTATGTAATGAAATGATGTAACCCTAGA : AAGGGTTAA L K I S E P K M Y V M K - C N P R : K G - - K - V N L R C M - - N D V T L E : R V K F K N K - T - D V C N E M M - P - : K G L . . . . . . 153583 GTAAGAGTGTGAAACACACTAAATGGCCAAGTGTATTGGCATATGAGGAAATGAACCTTC V R V - N T L N G Q V Y W H M R K - T F - E C E T H - M A K C I G I - G N E P S S K S V K H T K W P S V L A Y E E M N L . . 153643 ACGTAAAAGGG T - K R K R H V K G Maximal non-overlapping open reading frames (>= 64 codons): none PGL 23 (+ strand): 155323 155804 AGS-1 (155323 155720,155771 155804) SCR (e 0.864 d 0.000 a 0.000,e 0.706) Exon 1 155323 155720 ( 398 n); score: 0.864 Intron 1 155721 155770 ( 50 n); Pd: 0.000 Pa: 0.000 Exon 2 155771 155804 ( 34 n); score: 0.706 PGS (155323 155720,155771 155804) SGN-E547448+ 3-phase translation of AGS-1 (+strand): . . . . . . 155323 CCCACCCCAACCCCCATACTCATGCACCAATGGTTATCTTCTTCCCCCACCATTATAATG P T P T P I L M H Q W L S S S P T I I M P P Q P P Y S C T N G Y L L P P P L - - H P N P H T H A P M V I F F P H H Y N . . . . . . 155383 ATTTCAAAATTCTTAGCATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAA I S K F L A S V V I F F P H H S N G F K F Q N S - H Q W L S S S P T I L M V S N D F K I L S I S G Y L L P P P F - W F Q . . . . . . 155443 TTTCTTAGCTTTTTGTTTCATTTATAAATTTTTTAGAGAGATTTTCCCCCATCTTTCTCT F L S F L F H L - I F - R D F P P S F S F L A F C F I Y K F F R E I F P H L S L I S - L F V S F I N F L E R F S P I F L . . . . . . 155503 ACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAATAAAAAAGCTGATGAAAAAAACA T - K T R - S K K L - L I K K L M K K T P K K R D E V K S Y N - - K S - - K K Q Y L K N E M K - K V I I N K K A D E K N . . . . . . 155563 GTTTGTCGGGTTAAAGATGGAACTGTACAGGGATGGGAGGGTCGCCACTAATGGAGTTAG V C R V K D G T V Q G W E G R H - W S - F V G L K M E L Y R D G R V A T N G V R S L S G - R W N C T G M G G S P L M E L . . . . . . 155623 AGGGACATGTATGTTTTAGATTTGAGTTGAAAGCAGGGAAGTGGGTGTTTAAGTTTTACA R D M Y V L D L S - K Q G S G C L S F T G T C M F - I - V E S R E V G V - V L H E G H V C F R F E L K A G K W V F K F Y . . . . : . . 155683 TTTTTTTTACTTTATAATATAATGTTTAAATAATATTT : ATTTTTTGTTTATTCTCAAAAA F F L L Y N I M F K - Y L : F F V Y S Q K F F Y F I I - C L N N I : Y F L F I L K K I F F T L - Y N V - I I F : I F C L F S K . . 155793 AATGTTCAAATG N V Q M M F K K C S N Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 20:47:22 2006