GeneSeqer. Version of March 12, 2006. Date run: Tue Jul 25 14:48:22 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-nkJWf/C04HBa0077O05/C04HBa0077O05.seq.screen ________________________________________________________________________________ Sequence 1: C04HBa0077O05.1, from 1 to 131136, both strands analyzed. ... started at: Tue Jul 25 15:15:36 2006 EST library file: /tmp/cxgn-bacpublish-resources-sOZSQH/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 8 ... matches indexed, elapsed seconds = 8 HitsTableSize = 163 EST library file: /tmp/cxgn-bacpublish-resources-sOZSQH/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 7 ... matches indexed, elapsed seconds = 7 HitsTableSize = 149 ******************************************************************************** EST sequence 32 +strand 590 n (File: SGN-E389654+) 1 AGTCAATCCT TGGGTAGTAC TAAAAAACCA TATTTACAAA ATAAGAAAAA GATTTAAAGT 61 CCTTCCAATG CTAAACTAGG AACTAGATGG ATCCTAAACC ATCTATGATT GACTCAGTCA 121 CATTGGAGTA GACATTTGTA CACCAAAAAC AGAACAACGA AATACATTTA AGCTTGAGTT 181 CTTGCAGGTT GTTGTTCCTA TTTTCGAAAC ATCTATCATT TCTCTCTCTC CATATAGTCC 241 ACCATATACA AGCAGGTATT TTCTCCATCT TCCACTGTTT GTAGCCTCAA CTCCAGCCTC 301 CTCCCAACAG AAAAGAGTCT CATCAATCTT ACTAGGCGAT GAAAATAAGA TTCTTATGAG 361 AGAAAGCCTC CAATACGTTC GTGCATTTGC TTGCCTTGCC GTTTTCATAC GTTTTTCGGT 421 GGGAGCCTGA AGCTGAGACC TGTACTCCAG GAAATGCCTC TGAGATTAAG GAAAATCTGC 481 CACAGTTATA CAGTGAAATT GCAGTGTAGA AAGAGGTATT TTACTATCTC TGTATACTTA 541 CCACATAAGG AGCATCAAAT TTATTTTATA TTTTTTTTTA TAAAAAGGAG Predicted gene structure (within gDNA segment 3852 to 6681): Exon 1 4982 5294 ( 313 n); cDNA 54 366 ( 313 n); score: 0.883 Intron 1 5295 6001 ( 707 n); Pd: 0.000 (s: 0.70), Pa: 0.793 (s: 0) Exon 2 6002 6009 ( 8 n); cDNA 367 373 ( 7 n); score: 0.875 MATCH C04HBa0077O05.1+ SGN-E389654+ 0.883 321 0.544 C PGS_C04HBa0077O05.1+_SGN-E389654+ (4982 5294,6002 6009) Alignment (genomic DNA sequence = upper lines): TTAAAGTCCT TCCAATGCTA AACCAGGAAC TAGGTGGACC CTAAACCATC TATGATTGAA 5041 |||||||||| |||||||||| ||| |||||| ||| |||| | |||||||||| ||||||||| TTAAAGTCCT TCCAATGCTA AACTAGGAAC TAGATGGATC CTAAACCATC TATGATTGAC 113 TCAGTCTCAT TGGAGTAGAC ATTTGTACAC CAAAAACAGA ACAACAAAAT ACATTTAAGC 5101 |||||| ||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| TCAGTCACAT TGGAGTAGAC ATTTGTACAC CAAAAACAGA ACAACGAAAT ACATTTAAGC 173 TTGACTTCCT GCAGGTTGTT GTCCCTATTT T-AAAACATC AATCATTTCT CTCTCTCCAT 5160 |||| ||| | |||||||||| || ||||||| | ||||||| ||||||||| |||||||||| TTGAGTTCTT GCAGGTTGTT GTTCCTATTT TCGAAACATC TATCATTTCT CTCTCTCCAT 233 ATAGTCCACC ATATACAAGC AGGTATCATC CTCCATCTTT CTCTGTTTGT AGCCCCAACT 5220 |||||||||| |||||||||| |||||| | ||||||||| | |||||||| |||| ||||| ATAGTCCACC ATATACAAGC AGGTAT-TTT CTCCATCTTC CACTGTTTGT AGCCTCAACT 292 CCAACCTCCT CCCAACTGAA AAGAGTCTCA TCAACCTTAC TAGGCATAGT CCAGGAAATG 5280 ||| |||||| |||||| ||| |||||||||| |||| ||||| ||||| | | | || CCAGCCTCCT CCCAACAGAA AAGAGTCTCA TCAATCTTAC TAGGCGATGA AAATAAGATT 352 CCTCTGAGAT TAAGGAAAAT CTGGCACAGT TGATCAGTGA AATTGCAGTG TAGAAAGAGG 5340 | | ||||| ||| CTTATGAGAG AAAG...... .......... .......... .......... .......... 366 TGTTTCACTG TCTCTGTATC CTTACAACAG AAGGAGCATC TGTTGCATAG AGATATACCT 5400 .......... .......... .......... .......... .......... .......... 366 CTCTTGGCCA CATTGTTCAA TGTCAGAACT GCTTCATTGG CTAGCAGCCA GGTGAAGCAT 5460 .......... .......... .......... .......... .......... .......... 366 GCCATTATTT GTGGCACTTT GACTCTCCAA ATTTGCTTCC AAGGCCATTT GAAGTCTTAT 5520 .......... .......... .......... .......... .......... .......... 366 AAGGAGCGTT GTTTTTCCAG ATGTGTTGCC AGGATCACAG ATTACCTTAT TGTCCATCAT 5580 .......... .......... .......... .......... .......... .......... 366 AACTTGAAAG AGAATAGGAA GAGTTAACAG TGATGCTGGC CTTACTATGT AATTTCCATA 5640 .......... .......... .......... .......... .......... .......... 366 TCAGCTTCTT GACCATTGCC TAGCCCGTGA AAAGTCTCAA GAACCCAAAA ATTTTGCAAG 5700 .......... .......... .......... .......... .......... .......... 366 TCTCCCCATT CTCAATCATT CAAATATCTT CTGAAATTAA AGTTCCAACC ATCAGGTTCT 5760 .......... .......... .......... .......... .......... .......... 366 CCGATAGCAC CCGAGCTTGA ATCAGGCATC AAATGAGTTT GAAGAAATGT GGATATAGAT 5820 .......... .......... .......... .......... .......... .......... 366 CTTCAAAAGG AGCATGACCT ATCCACTCGT TTACCCAAAA AACAATTTGC TTTCATTCCC 5880 .......... .......... .......... .......... .......... .......... 366 CATTTAAACC CAATGTTGCT CACAAAGGGC TCTAATATTC TTCCATAAAC CCACCCCATG 5940 .......... .......... .......... .......... .......... .......... 366 AGTGGAAGTC ACTGGTTTAG TAGTCCAACA GCTTCTACTT TATACTGTTC ACTGATGACA 6000 .......... .......... .......... .......... .......... .......... 366 GCCTTCCAA 6009 || ||||| .CC-TCCAA 373 hqPGS_C04HBa0077O05.1+_SGN-E389654+ (4982 5294) ******************************************************************************** EST sequence 195 -strand 690 n (File: SGN-E390054-) 1 TCCACTGTTT GTAGCTCAAA CTCCAGCTTC CTCCCAACAG AAAAGAGTCT CATCAATCTT 61 ACTAGGCGAT GAAAATAAGA TTCTTATGAG AGAAAGCCTC CAATACGTTC GTGCATTTGC 121 TTGCCTTGCC GTTTTCATAC GTTTTTCGGT GGGAGCCTGA AGCTGAGACC TGTACTCCAG 181 GAAATGCCTC TGAGATTAAG GAAAATCTGC CACAGTTATA CAGTGAAATT GCAGTGTAGA 241 AAGAGGTATT TTACTATCTC TGTATACTTA CCACATAAGG AGCATCAAAT TTATTTTATA 301 TTTTTTTTTA TAAAAAGGAG TTACACAAAT AGTAAAGGGT CATTTAGCTA CTCCTTATCC 361 AAGTATTGCC AGTGCATGTA CTCTTCTTGT TTTTTTTAAT GAAGATATCA TAAAAGGCAT 421 AAAAAAGGTG CAAAGAGATT GCAAAACATA CAAAACTAGA GAGCTAACAA AGCTAAAAAA 481 TGTCCAGCCT TCATGTTGTA GCACATGTTT TCAAATTAAA ATAGAATGAA AGATTCATAC 541 ACACACTTAA GGTACATAAA ATTTCAGGTA GGAAAAGTTC AAAACTGATT TGGAACTCAA 601 AGAGTGGAAT ACTTTCAATG TGTTATAGAC CTGTATCTCT TTCAAATAAG ATGATTTGTA 661 GACCAGTCAT TACTTTCCAG CAAAATTGGT Predicted gene structure (within gDNA segment 2910 to 10371): Exon 1 3805 3813 ( 9 n); cDNA 149 157 ( 9 n); score: 0.778 Intron 1 3814 5095 (1282 n); Pd: 0.414 (s: 0), Pa: 0.000 (s: 0) Exon 2 5096 5115 ( 20 n); cDNA 158 175 ( 18 n); score: 0.650 Intron 2 5116 5269 ( 154 n); Pd: 0.917 (s: 0), Pa: 0.000 (s: 0.92) Exon 3 5270 5380 ( 111 n); cDNA 176 286 ( 111 n); score: 0.910 Intron 3 5381 8263 (2883 n); Pd: 0.000 (s: 0.88), Pa: 0.000 (s: 0) Exon 4 8264 8280 ( 17 n); cDNA 287 303 ( 17 n); score: 0.765 Intron 4 8281 8549 ( 269 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 5 8550 8570 ( 21 n); cDNA 304 324 ( 21 n); score: 0.667 Intron 5 8571 8904 ( 334 n); Pd: 0.751 (s: 0), Pa: 0.909 (s: 0) Exon 6 8905 8912 ( 8 n); cDNA 325 331 ( 7 n); score: 0.625 Intron 6 8913 9253 ( 341 n); Pd: 0.900 (s: 0), Pa: 0.997 (s: 0) Exon 7 9254 9261 ( 8 n); cDNA 332 339 ( 8 n); score: 0.875 MATCH C04HBa0077O05.1+ SGN-E390054- 0.910 194 0.281 C PGS_C04HBa0077O05.1+_SGN-E390054- (3805 3813,5096 5115,5270 5380,8264 8280,8550 8570,8905 8912,9254 9261) Alignment (genomic DNA sequence = upper lines): GTGGGAGAGG TAGGGGCTAG CCTCATCTCC TCCTCCTTAG TAGCAGTATT ATTTAGTAAT 3864 ||||||| GTGGGAGCC. .......... .......... .......... .......... .......... 157 CGCATAGTGC TGCTAAATCA ATTGGATTCT GTTGCATTTT GGTCCTTAAC TACATCATCT 3924 .......... .......... .......... .......... .......... .......... 157 GGAATACTCT TGATGGCACA AGATTTTTGC CAATTGTAGC CTATTTCTTT TTCTTTTTCT 3984 .......... .......... .......... .......... .......... .......... 157 TTCTACTGTG GCTGGGTGCA GAAGGTTGTT CTTTGTTTTC GAGAAAAGTG GTTAATGTAT 4044 .......... .......... .......... .......... .......... .......... 157 TACCGATATA GCACCAAGAA GGTACTGCTG AAAGTATTTG CAACAAATTA AAATAACACC 4104 .......... .......... .......... .......... .......... .......... 157 CCTTTAAGGA TTTATCACAG CTTCATTATT ATTTACAACA AAAATAAAAC AAAAGTAAAC 4164 .......... .......... .......... .......... .......... .......... 157 AATTCGTTTT GATATTTTGA ATAGAGTTTC CTTTGTCTTT AAAACATATT GCGTTTCTCA 4224 .......... .......... .......... .......... .......... .......... 157 CCCCCTAATT GTTTAACATA TATATACTGG AATATTACCT GCTTATAATT GTTTTACTTG 4284 .......... .......... .......... .......... .......... .......... 157 AGCCGAGGGG CTCTCAGAAA CAACAACCTC TCTGCCTTCA CAAGGTAAAG GTAATCTTCG 4344 .......... .......... .......... .......... .......... .......... 157 TACACACCAC CTTCCCTAGA CCCCTTTTAT AGGATTTCAC TGTGTGTTTT TGCAATTGGT 4404 .......... .......... .......... .......... .......... .......... 157 TATGTATTCT GGAATAGTTA GTCACCATTT CACTGACCGG AATTCCCTCC TCTAATGTTC 4464 .......... .......... .......... .......... .......... .......... 157 CAGCAATTCA ATAACCCACT TGTGTGCTTG GTATAATCCA CTTGCACCCA ACCATATTGA 4524 .......... .......... .......... .......... .......... .......... 157 GAAATAACTG CCATAATACG GAAATGGAAA AAATTGGTGA TTGATACTTC TCAGACATGT 4584 .......... .......... .......... .......... .......... .......... 157 TCCACTTAGT AGCATTAGAG CACAACTGGA TCTTCTTCTT TGATGGGTTT CGTGTGTTAA 4644 .......... .......... .......... .......... .......... .......... 157 GAAAACCTCT CGAACTCTTG GGAACAAAAA CACCTATATA ATCAGGGAGT CAACCACAAG 4704 .......... .......... .......... .......... .......... .......... 157 CAAAAGGATG GTCGCTAAGC CATATTGAGG GAGCTAATGA AATCCAAGAA GGGTGATATA 4764 .......... .......... .......... .......... .......... .......... 157 TCATTTACAG GGGATAAGTT GCTCCAATGG AAGAGACTAA TAAGGCAAAA GGATTTCAAA 4824 .......... .......... .......... .......... .......... .......... 157 CTGCTAATAG GAGTTGAGAT ACCATCAAAA CATCTGAGAT TCCTTTCTTT CAAATACACC 4884 .......... .......... .......... .......... .......... .......... 157 AAAAAAACAT GATGGAATCA TCTGCCAGGT CTTCTTGATG GGGCTATCAA CTTCTCTAAG 4944 .......... .......... .......... .......... .......... .......... 157 ACTCCAACTT CCAACTACTT CTTTGACACT TAAAAGATTA AAGTCCTTCC AATGCTAAAC 5004 .......... .......... .......... .......... .......... .......... 157 CAGGAACTAG GTGGACCCTA AACCATCTAT GATTGAATCA GTCTCATTGG AGTAGACATT 5064 .......... .......... .......... .......... .......... .......... 157 TGTACACCAA AAACAGAACA ACAAAATACA TTTAAGCTTG ACTTCCTGCA GGTTGTTGTC 5124 | |||| || | |||| | .......... .......... .......... .TGAAGC-TG A-GACCTGTA C......... 175 CCTATTTTAA AACATCAATC ATTTCTCTCT CTCCATATAG TCCACCATAT ACAAGCAGGT 5184 .......... .......... .......... .......... .......... .......... 175 ATCATCCTCC ATCTTTCTCT GTTTGTAGCC CCAACTCCAA CCTCCTCCCA ACTGAAAAGA 5244 .......... .......... .......... .......... .......... .......... 175 GTCTCATCAA CCTTACTAGG CATAGTCCAG GAAATGCCTC TGAGATTAAG GAAAATCTGG 5304 ||||| |||||||||| |||||||||| ||||||||| .......... .......... .....TCCAG GAAATGCCTC TGAGATTAAG GAAAATCTGC 210 CACAGTTGAT CAGTGAAATT GCAGTGTAGA AAGAGGTGTT TCACTGTCTC TGTATCCTTA 5364 ||||||| |||||||||| |||||||||| ||||||| || | ||| |||| ||||| |||| CACAGTTATA CAGTGAAATT GCAGTGTAGA AAGAGGTATT TTACTATCTC TGTATACTTA 270 CAACAGAAGG AGCATCTGTT GCATAGAGAT ATACCTCTCT TGGCCACATT GTTCAATGTC 5424 | ||| |||| |||||| CCACATAAGG AGCATC.... .......... .......... .......... .......... 286 AGAACTGCTT CATTGGCTAG CAGCCAGGTG AAGCATGCCA TTATTTGTGG CACTTTGACT 5484 .......... .......... .......... .......... .......... .......... 286 CTCCAAATTT GCTTCCAAGG CCATTTGAAG TCTTATAAGG AGCGTTGTTT TTCCAGATGT 5544 .......... .......... .......... .......... .......... .......... 286 GTTGCCAGGA TCACAGATTA CCTTATTGTC CATCATAACT TGAAAGAGAA TAGGAAGAGT 5604 .......... .......... .......... .......... .......... .......... 286 TAACAGTGAT GCTGGCCTTA CTATGTAATT TCCATATCAG CTTCTTGACC ATTGCCTAGC 5664 .......... .......... .......... .......... .......... .......... 286 CCGTGAAAAG TCTCAAGAAC CCAAAAATTT TGCAAGTCTC CCCATTCTCA ATCATTCAAA 5724 .......... .......... .......... .......... .......... .......... 286 TATCTTCTGA AATTAAAGTT CCAACCATCA GGTTCTCCGA TAGCACCCGA GCTTGAATCA 5784 .......... .......... .......... .......... .......... .......... 286 GGCATCAAAT GAGTTTGAAG AAATGTGGAT ATAGATCTTC AAAAGGAGCA TGACCTATCC 5844 .......... .......... .......... .......... .......... .......... 286 ACTCGTTTAC CCAAAAAACA ATTTGCTTTC ATTCCCCATT TAAACCCAAT GTTGCTCACA 5904 .......... .......... .......... .......... .......... .......... 286 AAGGGCTCTA ATATTCTTCC ATAAACCCAC CCCATGAGTG GAAGTCACTG GTTTAGTAGT 5964 .......... .......... .......... .......... .......... .......... 286 CCAACAGCTT CTACTTTATA CTGTTCACTG ATGACAGCCT TCCAAAGTGA CTGCTCTTGT 6024 .......... .......... .......... .......... .......... .......... 286 AAAGAGAATC TCCATAATGG CATAATCATT TGATTATCAT TAATGCCTCA AGTTTGTAAT 6084 .......... .......... .......... .......... .......... .......... 286 GCCAAGATAC CTTCCTTCTT GCTATATGTT AAAGTACTCC ACTTGACCAA GTGAAAAAAT 6144 .......... .......... .......... .......... .......... .......... 286 CTTTTTTTAC TGTTTCTCTG TCAATGGAAA TCTCTTTTAA CATATTACAT ATCCAATACT 6204 .......... .......... .......... .......... .......... .......... 286 TCTCCACTTT AACATATATT GGGAATAAGG ATATAACATA CGTGGGGAGT GACCTAGTAC 6264 .......... .......... .......... .......... .......... .......... 286 ACTGTTAGGC GATACTAATT ACCCTAAATG TATTGACTTT TCCATCTTCC AACCTCTTCT 6324 .......... .......... .......... .......... .......... .......... 286 GACTTTTTAC AAGTACCCCT TGTCAAATCT TGGAAGATAT ATGATTAGCT TCCGAGTTCA 6384 .......... .......... .......... .......... .......... .......... 286 AATAAGTAGA AGGAAGAGTT TCCACATCAC AACCCAAAAC ATCAACATTT GTCACTTGAC 6444 .......... .......... .......... .......... .......... .......... 286 TGAAAATAGC AAGGCCTCCT CTGATTGATT GATATGCAGT CCAAACACTG AATCACAAAA 6504 .......... .......... .......... .......... .......... .......... 286 AGTGAGTACC AATGGTGGTG TTCAAGCATT CTATTGAAGA ATCATACATC ACAAGAGTAT 6564 .......... .......... .......... .......... .......... .......... 286 CATGATCTTA TAGAAAACAG ATCAGGGCCA AATACACCCA TGTACTATCA AAAATAGTTT 6624 .......... .......... .......... .......... .......... .......... 286 AAATATACCC CTCGTTTGAG TTTCGGTGCA AATATACCCC GCCCGTTATA TTTACGGTCC 6684 .......... .......... .......... .......... .......... .......... 286 AAATATGTCC CTCCCGTTAT ACTTACAGTC CAAATATACC ACTCCTGTTA TACTTAAGAT 6744 .......... .......... .......... .......... .......... .......... 286 CCAAATATAC CCCTCACATT AAACTTTTAC AGTGATTTAC CCTTATTTTT AAGGGATGAG 6804 .......... .......... .......... .......... .......... .......... 286 CACGTGGCGA GCTTAGAAAC AAATAACACA TCCCCAATTT TAAATACCTG GTTCACTTTA 6864 .......... .......... .......... .......... .......... .......... 286 CGAAACTATG GGTTTAACCA TCCCGACCCA TTCACTTTCC AGCAATTGAA CCTGTCCAAA 6924 .......... .......... .......... .......... .......... .......... 286 GAGTCTACTA CTTACTGTTC AGAAATGCTA TGTGGAAATC GCCAGGCAGG TTAATGATAA 6984 .......... .......... .......... .......... .......... .......... 286 ACTTGCGAAA ATAGATCTTT ATTTTCTGAA GCTTGCAGAT GCCATGATCA CTTGGCTTGG 7044 .......... .......... .......... .......... .......... .......... 286 GATGAGATTA GTCCTGCTAC TAAAGACTCT GCCTAAGTTC CCAATGCTAC TTCAAACAAA 7104 .......... .......... .......... .......... .......... .......... 286 ATATCTCATA GTTATTTGTG CCTTATGTGT ATTTGCAGTA TTTTTTACCT TTGGGTTTAT 7164 .......... .......... .......... .......... .......... .......... 286 ATGATTCTGT CATCTGTGTA CTTTTACATA TTTTTTTTCA ACTTTGAGTT GTCTTCTTTT 7224 .......... .......... .......... .......... .......... .......... 286 CATCTGACCC CACGTTATAC CTAGAGATCT CCCAAAAGTC TTTAGTTTCT GTTTTCCTGA 7284 .......... .......... .......... .......... .......... .......... 286 GCCTAAAATT ATCCTTTTTC CCATAGTTGC GTCTGTACTG TTTTGCAGTG TTGGCCATTT 7344 .......... .......... .......... .......... .......... .......... 286 TCATTGCAGT ATTAATGTTT TGTTTGCTGT GCAATTTCTA GTTTCTTCTG AACAGCTATT 7404 .......... .......... .......... .......... .......... .......... 286 TTCTTGCTTC TGTTTTCATC ATCATCAGTC GCCACTTCTC CATTTGATTC TTCATCTAAA 7464 .......... .......... .......... .......... .......... .......... 286 AAGCATTGTA CCCCTCTTCT TATTCCCCTC TATTTAATAT CAGTTGCTAT TATCTTGTTT 7524 .......... .......... .......... .......... .......... .......... 286 GATAAGTCAT GCACCCAGTT GATGCTGCCT ATTTAGTTTC TTTTCCCGGG GACATCTTTT 7584 .......... .......... .......... .......... .......... .......... 286 CCTTCCTGTA AACCACAATT TCTTTCCTGA AGAAATTTTT AGAATTGGTT CTGGCTAATT 7644 .......... .......... .......... .......... .......... .......... 286 CTGTTCTGTC CAAGAAAAGA AGGGGAAATC TCCCAGCATT CAGTTTTTGG CCTTACCAGC 7704 .......... .......... .......... .......... .......... .......... 286 TTCTTTTCCA ACTTACTGGC CACATGTTCT TTCCCTTTTA AGAATTGCTG ACCATTATCT 7764 .......... .......... .......... .......... .......... .......... 286 CCTATTATCT CTGTGGTTTT CCGTTAAAAG TAACTGCTTG TCAGGACATG CTTCGTGCAC 7824 .......... .......... .......... .......... .......... .......... 286 AGAGCTGTTG CCTTTTGGGT GGGGACATGC TTTGTGCCCG TGGTGCTAAT ACTGTCCCAC 7884 .......... .......... .......... .......... .......... .......... 286 AGCGTCTTTA GTATCACATT TTCAACTCCC AATTCTAATT CTATAAGTTG CCTATCTTTG 7944 .......... .......... .......... .......... .......... .......... 286 CCTCTTTTAA TTGATCTTGT GTTGGGCTCT GAATCTAATT CTCTGGGCTT TGCTTTAGAT 8004 .......... .......... .......... .......... .......... .......... 286 TATGATAAGC AGTAATCATT ATTACTACTG TCTCATATTC TACGTAGCAG TAGACATGAT 8064 .......... .......... .......... .......... .......... .......... 286 TCTTATTACA TGAAATCTTC CTAATTTTTC TTTTATATGA TGTTAATTGT AGGTTGCGCC 8124 .......... .......... .......... .......... .......... .......... 286 ATAGAGGACC TGACTGGAGT GGACTGCATA GCCATGAGGA CTGTTACCTT GCTCATCAAC 8184 .......... .......... .......... .......... .......... .......... 286 GATTGGCAAT AGTAGACCCA ACTTCAGGAG ATCAACCGTT GTATAATGAG GACAAGACCA 8244 .......... .......... .......... .......... .......... .......... 286 TTGTTGTTGC GGTAGGAAAA TATTTACTAT ATACTTATAT ACTTCAATAC CACAACAGTA 8304 | ||||| | | ||| || .......... .........A AATTTATTTT ATATTT.... .......... .......... 303 AATGGTCTGT GGACAGTTTG TCTTTTGATT TTCTATAGTA CAAGCTTTTC TTGTAGGGTA 8364 .......... .......... .......... .......... .......... .......... 303 AAGTTTCTCT ACTTTACAGT GAACACAGGA ACTTAGAAAT AAAGGATTTG TGAAGAAACT 8424 .......... .......... .......... .......... .......... .......... 303 TTTGGTTCTT CACTTTAGCG GATTATGTGG TGCACAATGG CAGTCAATTA AACATCAGTT 8484 .......... .......... .......... .......... .......... .......... 303 AAGAACAATT CTAGGAGCTT TGAACTCAAA GAACTGAGAG ACTAATTCAG GGCTTGGAGC 8544 .......... .......... .......... .......... .......... .......... 303 CGAGATATAT TAGAAGAAGG AGAAATGTAT TATCTCAACT GTAATCCTTT ACATGGTATA 8604 | | | || || |||| || | .....TTTTT TATAAAAAGG AGTTAC.... .......... .......... .......... 324 TATGGATATA TTCCATAACT AAAATCAACT GCTACTTACA ATTCCCAACT GAATGTTATA 8664 .......... .......... .......... .......... .......... .......... 324 ACAGAATTGT AACTAACTAA TGAACCCCAA CTTACTATTG GACATCGTCC ACTAATTATC 8724 .......... .......... .......... .......... .......... .......... 324 TTGTCAGATT TGTAGACTTG CATCAATATG TGATAAGTAA CCAGGCGATT GACTAGATGA 8784 .......... .......... .......... .......... .......... .......... 324 ACATAGAGAG TCTACCGTTA TTTGTATTTA CTCTCAGTTT ATTGAAAGAT CTGTGGGTCA 8844 .......... .......... .......... .......... .......... .......... 324 CATAGTAGTA CAACTTTTCT ACGCAACGTA AGTCAAATGT TGATGGTTTG ATCTTTGTAG 8904 .......... .......... .......... .......... .......... .......... 324 ATCCAATGAT ATCATTTGGG TTTGGATAAA GGAATGATAT ATATGATTTC ATTTTTTGGG 8964 | | ||| A-CAAATA.. .......... .......... .......... .......... .......... 331 TTGAAATTCA AAAGATAAAT GTGTAGCCAA AAAAACTTAC AGAACATACA ATTCTGTCAT 9024 .......... .......... .......... .......... .......... .......... 331 TTGTTGTGAC CATATGATAA AGTGCAATGG TGGTATGAGT ATTACTATGA CACTGATGCG 9084 .......... .......... .......... .......... .......... .......... 331 TTCTTTTTAT TTTTGATGTT CTAGATAAGC TTCTCTTGTC AAATAGCTAA AAGCTATTAT 9144 .......... .......... .......... .......... .......... .......... 331 TCACACATTT CAGGAGCCTT CTTTGCTGGG CTACTGTGAC CTTCTCCCAT AGCTTGATTT 9204 .......... .......... .......... .......... .......... .......... 331 TGATAAATGT TTCTTCCATA AGATTGATAT CTGCTCCTTT CGGTTTTAGG TAAATGG 9261 | |||| || .......... .......... .......... .......... .........G TAAAGGG 339 hqPGS_C04HBa0077O05.1+_SGN-E390054- (5270 5380) ******************************************************************************** EST sequence 208 -strand 718 n (File: SGN-E549969-) 1 CATATACAAG CAGGTATTTT CTCCATCTTC CACTGTTTGT AGCCTCAACT CCAGCCTCTT 61 CCCAACAGAA AAGAGTCTCA TCAATCTTAC TAGGCGATGA AAATAAGATT CTTATGAGAG 121 AAAGCCTCCA ATACGTTCGT GCATTTGCTT GCCTTGCCGT TTTCATACGT TTTTCGGTGG 181 GAGCCTGAAG CTGAGACCTG TACTCCAGGA AATGCCTCTG AGATTAAGGA AAATCTGCCA 241 CAGTTATACA GTGAAATTGC AGTGTAGAAA GAGGTATTTT ACTATCTCTG TATACTTACC 301 ACATAAGGAG CATCAAATTT ATTTTATATT TTTTTTTATA AAAAGGAGTT ACACAAATAG 361 TAAAGGGTCA TTTAGCTACT CCTTATCCAA GTATTGCCAG TGCATGTACT CTTCTTGTTT 421 TTTTTAATGA AGATATCATA AAAGGCATAA AAAAGGTGCA AAGAGATTGC AAAACATACA 481 AAACTAGAGA GCTAACAAAG CTAAAAAATG TCCAGCCTTC ATGTTGTAGC ACATGTTTTC 541 AAATTAAAAT AGAATGAAAG ATTCATACAC ACACTTAAGG TACATAAAAT TTCAGGTAGG 601 AAAAGTTCAA AACTGATTTG GAACTCAAAG AGTGGAATAC TTTCAATGTG TTATAGACCT 661 GTATCTCTTT CAAATAAGAT GATTTGTAGA CCAGTCATTA CTTTCCAGCA AAATTGGT Predicted gene structure (within gDNA segment 2630 to 10371): Exon 1 3805 3813 ( 9 n); cDNA 177 185 ( 9 n); score: 0.778 Intron 1 3814 5095 (1282 n); Pd: 0.414 (s: 0), Pa: 0.000 (s: 0) Exon 2 5096 5115 ( 20 n); cDNA 186 203 ( 18 n); score: 0.650 Intron 2 5116 5269 ( 154 n); Pd: 0.917 (s: 0), Pa: 0.000 (s: 0.92) Exon 3 5270 5380 ( 111 n); cDNA 204 314 ( 111 n); score: 0.910 Intron 3 5381 8263 (2883 n); Pd: 0.000 (s: 0.88), Pa: 0.000 (s: 0) Exon 4 8264 8280 ( 17 n); cDNA 315 331 ( 17 n); score: 0.765 Intron 4 8281 8549 ( 269 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 5 8550 8570 ( 21 n); cDNA 332 352 ( 21 n); score: 0.667 Intron 5 8571 8904 ( 334 n); Pd: 0.751 (s: 0), Pa: 0.909 (s: 0) Exon 6 8905 8912 ( 8 n); cDNA 353 359 ( 7 n); score: 0.625 Intron 6 8913 9253 ( 341 n); Pd: 0.900 (s: 0), Pa: 0.997 (s: 0) Exon 7 9254 9261 ( 8 n); cDNA 360 367 ( 8 n); score: 0.875 MATCH C04HBa0077O05.1+ SGN-E549969- 0.910 194 0.270 C PGS_C04HBa0077O05.1+_SGN-E549969- (3805 3813,5096 5115,5270 5380,8264 8280,8550 8570,8905 8912,9254 9261) Alignment (genomic DNA sequence = upper lines): GTGGGAGAGG TAGGGGCTAG CCTCATCTCC TCCTCCTTAG TAGCAGTATT ATTTAGTAAT 3864 ||||||| GTGGGAGCC. .......... .......... .......... .......... .......... 185 CGCATAGTGC TGCTAAATCA ATTGGATTCT GTTGCATTTT GGTCCTTAAC TACATCATCT 3924 .......... .......... .......... .......... .......... .......... 185 GGAATACTCT TGATGGCACA AGATTTTTGC CAATTGTAGC CTATTTCTTT TTCTTTTTCT 3984 .......... .......... .......... .......... .......... .......... 185 TTCTACTGTG GCTGGGTGCA GAAGGTTGTT CTTTGTTTTC GAGAAAAGTG GTTAATGTAT 4044 .......... .......... .......... .......... .......... .......... 185 TACCGATATA GCACCAAGAA GGTACTGCTG AAAGTATTTG CAACAAATTA AAATAACACC 4104 .......... .......... .......... .......... .......... .......... 185 CCTTTAAGGA TTTATCACAG CTTCATTATT ATTTACAACA AAAATAAAAC AAAAGTAAAC 4164 .......... .......... .......... .......... .......... .......... 185 AATTCGTTTT GATATTTTGA ATAGAGTTTC CTTTGTCTTT AAAACATATT GCGTTTCTCA 4224 .......... .......... .......... .......... .......... .......... 185 CCCCCTAATT GTTTAACATA TATATACTGG AATATTACCT GCTTATAATT GTTTTACTTG 4284 .......... .......... .......... .......... .......... .......... 185 AGCCGAGGGG CTCTCAGAAA CAACAACCTC TCTGCCTTCA CAAGGTAAAG GTAATCTTCG 4344 .......... .......... .......... .......... .......... .......... 185 TACACACCAC CTTCCCTAGA CCCCTTTTAT AGGATTTCAC TGTGTGTTTT TGCAATTGGT 4404 .......... .......... .......... .......... .......... .......... 185 TATGTATTCT GGAATAGTTA GTCACCATTT CACTGACCGG AATTCCCTCC TCTAATGTTC 4464 .......... .......... .......... .......... .......... .......... 185 CAGCAATTCA ATAACCCACT TGTGTGCTTG GTATAATCCA CTTGCACCCA ACCATATTGA 4524 .......... .......... .......... .......... .......... .......... 185 GAAATAACTG CCATAATACG GAAATGGAAA AAATTGGTGA TTGATACTTC TCAGACATGT 4584 .......... .......... .......... .......... .......... .......... 185 TCCACTTAGT AGCATTAGAG CACAACTGGA TCTTCTTCTT TGATGGGTTT CGTGTGTTAA 4644 .......... .......... .......... .......... .......... .......... 185 GAAAACCTCT CGAACTCTTG GGAACAAAAA CACCTATATA ATCAGGGAGT CAACCACAAG 4704 .......... .......... .......... .......... .......... .......... 185 CAAAAGGATG GTCGCTAAGC CATATTGAGG GAGCTAATGA AATCCAAGAA GGGTGATATA 4764 .......... .......... .......... .......... .......... .......... 185 TCATTTACAG GGGATAAGTT GCTCCAATGG AAGAGACTAA TAAGGCAAAA GGATTTCAAA 4824 .......... .......... .......... .......... .......... .......... 185 CTGCTAATAG GAGTTGAGAT ACCATCAAAA CATCTGAGAT TCCTTTCTTT CAAATACACC 4884 .......... .......... .......... .......... .......... .......... 185 AAAAAAACAT GATGGAATCA TCTGCCAGGT CTTCTTGATG GGGCTATCAA CTTCTCTAAG 4944 .......... .......... .......... .......... .......... .......... 185 ACTCCAACTT CCAACTACTT CTTTGACACT TAAAAGATTA AAGTCCTTCC AATGCTAAAC 5004 .......... .......... .......... .......... .......... .......... 185 CAGGAACTAG GTGGACCCTA AACCATCTAT GATTGAATCA GTCTCATTGG AGTAGACATT 5064 .......... .......... .......... .......... .......... .......... 185 TGTACACCAA AAACAGAACA ACAAAATACA TTTAAGCTTG ACTTCCTGCA GGTTGTTGTC 5124 | |||| || | |||| | .......... .......... .......... .TGAAGC-TG A-GACCTGTA C......... 203 CCTATTTTAA AACATCAATC ATTTCTCTCT CTCCATATAG TCCACCATAT ACAAGCAGGT 5184 .......... .......... .......... .......... .......... .......... 203 ATCATCCTCC ATCTTTCTCT GTTTGTAGCC CCAACTCCAA CCTCCTCCCA ACTGAAAAGA 5244 .......... .......... .......... .......... .......... .......... 203 GTCTCATCAA CCTTACTAGG CATAGTCCAG GAAATGCCTC TGAGATTAAG GAAAATCTGG 5304 ||||| |||||||||| |||||||||| ||||||||| .......... .......... .....TCCAG GAAATGCCTC TGAGATTAAG GAAAATCTGC 238 CACAGTTGAT CAGTGAAATT GCAGTGTAGA AAGAGGTGTT TCACTGTCTC TGTATCCTTA 5364 ||||||| |||||||||| |||||||||| ||||||| || | ||| |||| ||||| |||| CACAGTTATA CAGTGAAATT GCAGTGTAGA AAGAGGTATT TTACTATCTC TGTATACTTA 298 CAACAGAAGG AGCATCTGTT GCATAGAGAT ATACCTCTCT TGGCCACATT GTTCAATGTC 5424 | ||| |||| |||||| CCACATAAGG AGCATC.... .......... .......... .......... .......... 314 AGAACTGCTT CATTGGCTAG CAGCCAGGTG AAGCATGCCA TTATTTGTGG CACTTTGACT 5484 .......... .......... .......... .......... .......... .......... 314 CTCCAAATTT GCTTCCAAGG CCATTTGAAG TCTTATAAGG AGCGTTGTTT TTCCAGATGT 5544 .......... .......... .......... .......... .......... .......... 314 GTTGCCAGGA TCACAGATTA CCTTATTGTC CATCATAACT TGAAAGAGAA TAGGAAGAGT 5604 .......... .......... .......... .......... .......... .......... 314 TAACAGTGAT GCTGGCCTTA CTATGTAATT TCCATATCAG CTTCTTGACC ATTGCCTAGC 5664 .......... .......... .......... .......... .......... .......... 314 CCGTGAAAAG TCTCAAGAAC CCAAAAATTT TGCAAGTCTC CCCATTCTCA ATCATTCAAA 5724 .......... .......... .......... .......... .......... .......... 314 TATCTTCTGA AATTAAAGTT CCAACCATCA GGTTCTCCGA TAGCACCCGA GCTTGAATCA 5784 .......... .......... .......... .......... .......... .......... 314 GGCATCAAAT GAGTTTGAAG AAATGTGGAT ATAGATCTTC AAAAGGAGCA TGACCTATCC 5844 .......... .......... .......... .......... .......... .......... 314 ACTCGTTTAC CCAAAAAACA ATTTGCTTTC ATTCCCCATT TAAACCCAAT GTTGCTCACA 5904 .......... .......... .......... .......... .......... .......... 314 AAGGGCTCTA ATATTCTTCC ATAAACCCAC CCCATGAGTG GAAGTCACTG GTTTAGTAGT 5964 .......... .......... .......... .......... .......... .......... 314 CCAACAGCTT CTACTTTATA CTGTTCACTG ATGACAGCCT TCCAAAGTGA CTGCTCTTGT 6024 .......... .......... .......... .......... .......... .......... 314 AAAGAGAATC TCCATAATGG CATAATCATT TGATTATCAT TAATGCCTCA AGTTTGTAAT 6084 .......... .......... .......... .......... .......... .......... 314 GCCAAGATAC CTTCCTTCTT GCTATATGTT AAAGTACTCC ACTTGACCAA GTGAAAAAAT 6144 .......... .......... .......... .......... .......... .......... 314 CTTTTTTTAC TGTTTCTCTG TCAATGGAAA TCTCTTTTAA CATATTACAT ATCCAATACT 6204 .......... .......... .......... .......... .......... .......... 314 TCTCCACTTT AACATATATT GGGAATAAGG ATATAACATA CGTGGGGAGT GACCTAGTAC 6264 .......... .......... .......... .......... .......... .......... 314 ACTGTTAGGC GATACTAATT ACCCTAAATG TATTGACTTT TCCATCTTCC AACCTCTTCT 6324 .......... .......... .......... .......... .......... .......... 314 GACTTTTTAC AAGTACCCCT TGTCAAATCT TGGAAGATAT ATGATTAGCT TCCGAGTTCA 6384 .......... .......... .......... .......... .......... .......... 314 AATAAGTAGA AGGAAGAGTT TCCACATCAC AACCCAAAAC ATCAACATTT GTCACTTGAC 6444 .......... .......... .......... .......... .......... .......... 314 TGAAAATAGC AAGGCCTCCT CTGATTGATT GATATGCAGT CCAAACACTG AATCACAAAA 6504 .......... .......... .......... .......... .......... .......... 314 AGTGAGTACC AATGGTGGTG TTCAAGCATT CTATTGAAGA ATCATACATC ACAAGAGTAT 6564 .......... .......... .......... .......... .......... .......... 314 CATGATCTTA TAGAAAACAG ATCAGGGCCA AATACACCCA TGTACTATCA AAAATAGTTT 6624 .......... .......... .......... .......... .......... .......... 314 AAATATACCC CTCGTTTGAG TTTCGGTGCA AATATACCCC GCCCGTTATA TTTACGGTCC 6684 .......... .......... .......... .......... .......... .......... 314 AAATATGTCC CTCCCGTTAT ACTTACAGTC CAAATATACC ACTCCTGTTA TACTTAAGAT 6744 .......... .......... .......... .......... .......... .......... 314 CCAAATATAC CCCTCACATT AAACTTTTAC AGTGATTTAC CCTTATTTTT AAGGGATGAG 6804 .......... .......... .......... .......... .......... .......... 314 CACGTGGCGA GCTTAGAAAC AAATAACACA TCCCCAATTT TAAATACCTG GTTCACTTTA 6864 .......... .......... .......... .......... .......... .......... 314 CGAAACTATG GGTTTAACCA TCCCGACCCA TTCACTTTCC AGCAATTGAA CCTGTCCAAA 6924 .......... .......... .......... .......... .......... .......... 314 GAGTCTACTA CTTACTGTTC AGAAATGCTA TGTGGAAATC GCCAGGCAGG TTAATGATAA 6984 .......... .......... .......... .......... .......... .......... 314 ACTTGCGAAA ATAGATCTTT ATTTTCTGAA GCTTGCAGAT GCCATGATCA CTTGGCTTGG 7044 .......... .......... .......... .......... .......... .......... 314 GATGAGATTA GTCCTGCTAC TAAAGACTCT GCCTAAGTTC CCAATGCTAC TTCAAACAAA 7104 .......... .......... .......... .......... .......... .......... 314 ATATCTCATA GTTATTTGTG CCTTATGTGT ATTTGCAGTA TTTTTTACCT TTGGGTTTAT 7164 .......... .......... .......... .......... .......... .......... 314 ATGATTCTGT CATCTGTGTA CTTTTACATA TTTTTTTTCA ACTTTGAGTT GTCTTCTTTT 7224 .......... .......... .......... .......... .......... .......... 314 CATCTGACCC CACGTTATAC CTAGAGATCT CCCAAAAGTC TTTAGTTTCT GTTTTCCTGA 7284 .......... .......... .......... .......... .......... .......... 314 GCCTAAAATT ATCCTTTTTC CCATAGTTGC GTCTGTACTG TTTTGCAGTG TTGGCCATTT 7344 .......... .......... .......... .......... .......... .......... 314 TCATTGCAGT ATTAATGTTT TGTTTGCTGT GCAATTTCTA GTTTCTTCTG AACAGCTATT 7404 .......... .......... .......... .......... .......... .......... 314 TTCTTGCTTC TGTTTTCATC ATCATCAGTC GCCACTTCTC CATTTGATTC TTCATCTAAA 7464 .......... .......... .......... .......... .......... .......... 314 AAGCATTGTA CCCCTCTTCT TATTCCCCTC TATTTAATAT CAGTTGCTAT TATCTTGTTT 7524 .......... .......... .......... .......... .......... .......... 314 GATAAGTCAT GCACCCAGTT GATGCTGCCT ATTTAGTTTC TTTTCCCGGG GACATCTTTT 7584 .......... .......... .......... .......... .......... .......... 314 CCTTCCTGTA AACCACAATT TCTTTCCTGA AGAAATTTTT AGAATTGGTT CTGGCTAATT 7644 .......... .......... .......... .......... .......... .......... 314 CTGTTCTGTC CAAGAAAAGA AGGGGAAATC TCCCAGCATT CAGTTTTTGG CCTTACCAGC 7704 .......... .......... .......... .......... .......... .......... 314 TTCTTTTCCA ACTTACTGGC CACATGTTCT TTCCCTTTTA AGAATTGCTG ACCATTATCT 7764 .......... .......... .......... .......... .......... .......... 314 CCTATTATCT CTGTGGTTTT CCGTTAAAAG TAACTGCTTG TCAGGACATG CTTCGTGCAC 7824 .......... .......... .......... .......... .......... .......... 314 AGAGCTGTTG CCTTTTGGGT GGGGACATGC TTTGTGCCCG TGGTGCTAAT ACTGTCCCAC 7884 .......... .......... .......... .......... .......... .......... 314 AGCGTCTTTA GTATCACATT TTCAACTCCC AATTCTAATT CTATAAGTTG CCTATCTTTG 7944 .......... .......... .......... .......... .......... .......... 314 CCTCTTTTAA TTGATCTTGT GTTGGGCTCT GAATCTAATT CTCTGGGCTT TGCTTTAGAT 8004 .......... .......... .......... .......... .......... .......... 314 TATGATAAGC AGTAATCATT ATTACTACTG TCTCATATTC TACGTAGCAG TAGACATGAT 8064 .......... .......... .......... .......... .......... .......... 314 TCTTATTACA TGAAATCTTC CTAATTTTTC TTTTATATGA TGTTAATTGT AGGTTGCGCC 8124 .......... .......... .......... .......... .......... .......... 314 ATAGAGGACC TGACTGGAGT GGACTGCATA GCCATGAGGA CTGTTACCTT GCTCATCAAC 8184 .......... .......... .......... .......... .......... .......... 314 GATTGGCAAT AGTAGACCCA ACTTCAGGAG ATCAACCGTT GTATAATGAG GACAAGACCA 8244 .......... .......... .......... .......... .......... .......... 314 TTGTTGTTGC GGTAGGAAAA TATTTACTAT ATACTTATAT ACTTCAATAC CACAACAGTA 8304 | ||||| | | ||| || .......... .........A AATTTATTTT ATATTT.... .......... .......... 331 AATGGTCTGT GGACAGTTTG TCTTTTGATT TTCTATAGTA CAAGCTTTTC TTGTAGGGTA 8364 .......... .......... .......... .......... .......... .......... 331 AAGTTTCTCT ACTTTACAGT GAACACAGGA ACTTAGAAAT AAAGGATTTG TGAAGAAACT 8424 .......... .......... .......... .......... .......... .......... 331 TTTGGTTCTT CACTTTAGCG GATTATGTGG TGCACAATGG CAGTCAATTA AACATCAGTT 8484 .......... .......... .......... .......... .......... .......... 331 AAGAACAATT CTAGGAGCTT TGAACTCAAA GAACTGAGAG ACTAATTCAG GGCTTGGAGC 8544 .......... .......... .......... .......... .......... .......... 331 CGAGATATAT TAGAAGAAGG AGAAATGTAT TATCTCAACT GTAATCCTTT ACATGGTATA 8604 | | | || || |||| || | .....TTTTT TATAAAAAGG AGTTAC.... .......... .......... .......... 352 TATGGATATA TTCCATAACT AAAATCAACT GCTACTTACA ATTCCCAACT GAATGTTATA 8664 .......... .......... .......... .......... .......... .......... 352 ACAGAATTGT AACTAACTAA TGAACCCCAA CTTACTATTG GACATCGTCC ACTAATTATC 8724 .......... .......... .......... .......... .......... .......... 352 TTGTCAGATT TGTAGACTTG CATCAATATG TGATAAGTAA CCAGGCGATT GACTAGATGA 8784 .......... .......... .......... .......... .......... .......... 352 ACATAGAGAG TCTACCGTTA TTTGTATTTA CTCTCAGTTT ATTGAAAGAT CTGTGGGTCA 8844 .......... .......... .......... .......... .......... .......... 352 CATAGTAGTA CAACTTTTCT ACGCAACGTA AGTCAAATGT TGATGGTTTG ATCTTTGTAG 8904 .......... .......... .......... .......... .......... .......... 352 ATCCAATGAT ATCATTTGGG TTTGGATAAA GGAATGATAT ATATGATTTC ATTTTTTGGG 8964 | | ||| A-CAAATA.. .......... .......... .......... .......... .......... 359 TTGAAATTCA AAAGATAAAT GTGTAGCCAA AAAAACTTAC AGAACATACA ATTCTGTCAT 9024 .......... .......... .......... .......... .......... .......... 359 TTGTTGTGAC CATATGATAA AGTGCAATGG TGGTATGAGT ATTACTATGA CACTGATGCG 9084 .......... .......... .......... .......... .......... .......... 359 TTCTTTTTAT TTTTGATGTT CTAGATAAGC TTCTCTTGTC AAATAGCTAA AAGCTATTAT 9144 .......... .......... .......... .......... .......... .......... 359 TCACACATTT CAGGAGCCTT CTTTGCTGGG CTACTGTGAC CTTCTCCCAT AGCTTGATTT 9204 .......... .......... .......... .......... .......... .......... 359 TGATAAATGT TTCTTCCATA AGATTGATAT CTGCTCCTTT CGGTTTTAGG TAAATGG 9261 | |||| || .......... .......... .......... .......... .........G TAAAGGG 367 hqPGS_C04HBa0077O05.1+_SGN-E549969- (5270 5380) ******************************************************************************** EST sequence 111 +strand 317 n (File: SGN-E238326+) 1 TACACCAATG TTTCTCATGT CTCGGAAGAT AAAGTCATTG GGTGTGAAAA TGGTTTTATC 61 AGGTGAAGGT TCTGATGAAA TTTTTGGTGG TTATTTATAT TTCCACAAGG CACCCAACAA 121 AGAGGAGTTT CACCAAGAAA CTTGTAGAAA GATTAAAGCA CTTCATCTTT ATGATTGCTT 181 GAGGGCCAAT AAATCTACTT CAGCTTGGGG TGTTGAAGCT CGTGTACCTT TCTTGGATAA 241 AGAATTCATC AATATTGCAA TGAACATTGA TCCGGAATGG AAAATGATCC GACCTGACCT 301 CGGAAGAATA GAAAAGT Predicted gene structure (within gDNA segment 18720 to 21100): Exon 1 19320 19470 ( 151 n); cDNA 1 151 ( 151 n); score: 1.000 Intron 1 19471 19586 ( 116 n); Pd: 0.467 (s: 1.00), Pa: 0.829 (s: 1.00) Exon 2 19587 19721 ( 135 n); cDNA 152 286 ( 135 n); score: 1.000 Intron 2 19722 20459 ( 738 n); Pd: 0.888 (s: 1.00), Pa: 0.998 (s: 0) Exon 3 20460 20490 ( 31 n); cDNA 287 317 ( 31 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E238326+ 1.000 317 1.000 C PGS_C04HBa0077O05.1+_SGN-E238326+ (19320 19470,19587 19721,20460 20490) Alignment (genomic DNA sequence = upper lines): TACACCAATG TTTCTCATGT CTCGGAAGAT AAAGTCATTG GGTGTGAAAA TGGTTTTATC 19379 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACACCAATG TTTCTCATGT CTCGGAAGAT AAAGTCATTG GGTGTGAAAA TGGTTTTATC 60 AGGTGAAGGT TCTGATGAAA TTTTTGGTGG TTATTTATAT TTCCACAAGG CACCCAACAA 19439 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTGAAGGT TCTGATGAAA TTTTTGGTGG TTATTTATAT TTCCACAAGG CACCCAACAA 120 AGAGGAGTTT CACCAAGAAA CTTGTAGAAA GGTGGATCAC ATTATCAATT TTGCATTCAT 19499 |||||||||| |||||||||| |||||||||| | AGAGGAGTTT CACCAAGAAA CTTGTAGAAA G......... .......... .......... 151 TCAGGCTTTA TTGGAAGTAA CTGCATTTCT ATTAGAATTA TCTTTGAACT ATTTCTAGCT 19559 .......... .......... .......... .......... .......... .......... 151 CTGATGGATG CTTTGATGTT AATCCAGATT AAAGCACTTC ATCTTTATGA TTGCTTGAGG 19619 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......ATT AAAGCACTTC ATCTTTATGA TTGCTTGAGG 184 GCCAATAAAT CTACTTCAGC TTGGGGTGTT GAAGCTCGTG TACCTTTCTT GGATAAAGAA 19679 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAATAAAT CTACTTCAGC TTGGGGTGTT GAAGCTCGTG TACCTTTCTT GGATAAAGAA 244 TTCATCAATA TTGCAATGAA CATTGATCCG GAATGGAAAA TGGTAATTGC TTCCCCTCTT 19739 |||||||||| |||||||||| |||||||||| |||||||||| || TTCATCAATA TTGCAATGAA CATTGATCCG GAATGGAAAA TG........ .......... 286 AAATCTCTAA CCCACCTTCA CCCAACCATT AAATCTAGAT TAACAAAGAC CAAGAAAGAA 19799 .......... .......... .......... .......... .......... .......... 286 AGATAAATCC TGTTCTTCCT TCAAGGAACA ATAAAATGAC ATCTTACATA AAAAAATGTC 19859 .......... .......... .......... .......... .......... .......... 286 AAAAGATTAC TGCAAGTTAT GTAGAAAAAC AGTCTTCAAC GTCGTGGTAG ACCAGGGTTC 19919 .......... .......... .......... .......... .......... .......... 286 AAATCTCAAG AAAAAAAATG TTATGTAATT TTTCTCATAT GTTTAAGCCT TGATGCAGAG 19979 .......... .......... .......... .......... .......... .......... 286 TTACCTAGTA AATGAGCTAC TGAGAAGTTG CAAGTACTTG GTGGATTAGT TGAGGTGCAC 20039 .......... .......... .......... .......... .......... .......... 286 ACAAGTTGAC TGAACCATTC TTCATAGAGA CAAGTTCAAT CTTGTTTTAT CATGAGTTTA 20099 .......... .......... .......... .......... .......... .......... 286 TGTTGTGTTG ACTTTCCTGT GTTTATAAAT AGATGAGCAC ATTTCTGGAG CATGATTTAA 20159 .......... .......... .......... .......... .......... .......... 286 TTTATTTCGC TCTTTGAGGT TTCTGAAGTT ATTTCTAAAC TCAAGCTTGC TGCGACTTAT 20219 .......... .......... .......... .......... .......... .......... 286 GTTAGGTCTA GAGAATTCTG CCAGGCAACA AATGGAATGT ACATTCAAGT ATTTATCTCC 20279 .......... .......... .......... .......... .......... .......... 286 TTATTAGAAG TCCAGTGTTA CTTGAACGGA TCTGATGTAT GGGATACAAT ATAGCTTCAT 20339 .......... .......... .......... .......... .......... .......... 286 ACACATAACC TCATTATAAT GTTGCTGATT TCATCTTTAC ATCTAGTATG ATCCTACAAT 20399 .......... .......... .......... .......... .......... .......... 286 TTAATATATC TCTGTACAGT GACTATTATA TACTGAAAAT TCTTTCTTGA AACATTACAG 20459 .......... .......... .......... .......... .......... .......... 286 ATCCGACCTG ACCTCGGAAG AATAGAAAAG T 20490 |||||||||| |||||||||| |||||||||| | ATCCGACCTG ACCTCGGAAG AATAGAAAAG T 317 hqPGS_C04HBa0077O05.1+_SGN-E238326+ (19320 19470,19587 19721,20460 20490) ******************************************************************************** EST sequence 180 -strand 364 n (File: SGN-E238902-) 1 AAGGAAGGGT ACTACTATAG AACTATTTTC GAGCGATATT TCCCCAAGGC TGCTGCAAGA 61 GAAACTGTTC CTGGTGGTCC AAGTGTGGCC TGCAGCACTG CAAAAGCAGT AGAATGGGAT 121 GCCGCTTGGT CCAAGAATCT AGATCCATCC GGTCGAGCTG CTCTCGGTGT TCATGAAGCT 181 GCTTATGAGG TTAAAGAACT ATGAAGTTGA TAAAGCTGTA GTAGCTGTTT GATTGTATAT 241 CTTCATTCAA AAACCTGACT TGTTCCACAT TTGACTTCTT TTACGAGTTT GAATTCTTTG 301 CTTCTGGTTT TACAATTACC AAAGTTTATT CTACTTGAGA AGAAAAAAAA AAAAAAAAAA 361 AAAA Predicted gene structure (within gDNA segment 20479 to 22391): Exon 1 21089 21136 ( 48 n); cDNA 1 48 ( 48 n); score: 1.000 Intron 1 21137 21304 ( 168 n); Pd: 0.998 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 21305 21600 ( 296 n); cDNA 49 344 ( 296 n); score: 1.000 PPA cDNA 345 364 MATCH C04HBa0077O05.1+ SGN-E238902- 1.000 344 0.945 C PGS_C04HBa0077O05.1+_SGN-E238902- (21089 21136,21305 21600) Alignment (genomic DNA sequence = upper lines): AAGGAAGGGT ACTACTATAG AACTATTTTC GAGCGATATT TCCCCAAGGT GGGTCTTTCA 21148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AAGGAAGGGT ACTACTATAG AACTATTTTC GAGCGATATT TCCCCAAG.. .......... 48 TGTCTCTTTT CTTTATTATT CATGTACAGT TTATGATACT TTCTCCCAAA TAATATTTTC 21208 .......... .......... .......... .......... .......... .......... 48 TTTTCAATAT TACTTGAGCC ATTAACAAGA TTGCTTCTAT CTTGGTATTT GTTGATTAAG 21268 .......... .......... .......... .......... .......... .......... 48 GGGTAATATC ATAATTTTAA TTGTTCTTTG GAGCAGGCTG CTGCAAGAGA AACTGTTCCT 21328 |||| |||||||||| |||||||||| .......... .......... .......... ......GCTG CTGCAAGAGA AACTGTTCCT 72 GGTGGTCCAA GTGTGGCCTG CAGCACTGCA AAAGCAGTAG AATGGGATGC CGCTTGGTCC 21388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGGTCCAA GTGTGGCCTG CAGCACTGCA AAAGCAGTAG AATGGGATGC CGCTTGGTCC 132 AAGAATCTAG ATCCATCCGG TCGAGCTGCT CTCGGTGTTC ATGAAGCTGC TTATGAGGTT 21448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATCTAG ATCCATCCGG TCGAGCTGCT CTCGGTGTTC ATGAAGCTGC TTATGAGGTT 192 AAAGAACTAT GAAGTTGATA AAGCTGTAGT AGCTGTTTGA TTGTATATCT TCATTCAAAA 21508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAACTAT GAAGTTGATA AAGCTGTAGT AGCTGTTTGA TTGTATATCT TCATTCAAAA 252 ACCTGACTTG TTCCACATTT GACTTCTTTT ACGAGTTTGA ATTCTTTGCT TCTGGTTTTA 21568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTGACTTG TTCCACATTT GACTTCTTTT ACGAGTTTGA ATTCTTTGCT TCTGGTTTTA 312 CAATTACCAA AGTTTATTCT ACTTGAGAAG AA 21600 |||||||||| |||||||||| |||||||||| || CAATTACCAA AGTTTATTCT ACTTGAGAAG AA 344 hqPGS_C04HBa0077O05.1+_SGN-E238902- (21089 21136,21305 21600) ******************************************************************************** EST sequence 179 -strand 298 n (File: SGN-E238813-) 1 GTTCCTGGTG GTCCAAGTGT GGCCTGCAGC ACTGCAAAAG CAGTAGAATG GGATGCCGCT 61 TGGTCCAAGA ATCTAGATCC ATCCGGTCGA GCTGCTCTCG GTGTTCATGA AGCTGCTTAT 121 GAGGTTAAAG AACTATGAAG TTGATAAAGC TGTAGTAGCT GTTTGATTGT ATATCTTCAT 181 TCAAAAACCT GACTTGTTCC ACATTTGACT TCTTTTACGA GTTTGAATTC TTTGCTTCTG 241 GTTTTACAAT TACCAAAGTT TATTCTACTT GAGAACCAAA AAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 20713 to 22427): Exon 1 21323 21597 ( 275 n); cDNA 1 275 ( 275 n); score: 1.000 PPA cDNA 278 298 MATCH C04HBa0077O05.1+ SGN-E238813- 1.000 275 0.923 C PGS_C04HBa0077O05.1+_SGN-E238813- (21323 21597) Alignment (genomic DNA sequence = upper lines): GTTCCTGGTG GTCCAAGTGT GGCCTGCAGC ACTGCAAAAG CAGTAGAATG GGATGCCGCT 21382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCCTGGTG GTCCAAGTGT GGCCTGCAGC ACTGCAAAAG CAGTAGAATG GGATGCCGCT 60 TGGTCCAAGA ATCTAGATCC ATCCGGTCGA GCTGCTCTCG GTGTTCATGA AGCTGCTTAT 21442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTCCAAGA ATCTAGATCC ATCCGGTCGA GCTGCTCTCG GTGTTCATGA AGCTGCTTAT 120 GAGGTTAAAG AACTATGAAG TTGATAAAGC TGTAGTAGCT GTTTGATTGT ATATCTTCAT 21502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGTTAAAG AACTATGAAG TTGATAAAGC TGTAGTAGCT GTTTGATTGT ATATCTTCAT 180 TCAAAAACCT GACTTGTTCC ACATTTGACT TCTTTTACGA GTTTGAATTC TTTGCTTCTG 21562 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAAACCT GACTTGTTCC ACATTTGACT TCTTTTACGA GTTTGAATTC TTTGCTTCTG 240 GTTTTACAAT TACCAAAGTT TATTCTACTT GAGAA 21597 |||||||||| |||||||||| |||||||||| ||||| GTTTTACAAT TACCAAAGTT TATTCTACTT GAGAA 275 hqPGS_C04HBa0077O05.1+_SGN-E238813- (21323 21597) ******************************************************************************** EST sequence 33 -strand 580 n (File: SGN-E204223-) 1 TACTCAAAAT AACTTATTTT AAGTTAAAAA AAAAAACTTA TTTTAAGCCA AAAGTTAAAA 61 GCTGGGGTAG GGGTGCTTTT TTTTTAGCTT ATAAGCTGTT TTAAGTTGAC CACATTTTTA 121 TCTTTTTGCC CTTAATATTT TTATACAATC TCCAAATTAT CCACATAACT CTAACATCTC 181 TTTCTTCCAT TTTTCCATTT TCACGTTTGG CATAGCAACT TCAACACTTT TATCCAAATG 241 CATAACTTTT AAAAGTACTT TTTTAAAGCT AAGTCCATCC AAACGGGCCC TAAGAATGAA 301 CTCTACATGA ATTTTTCGAT CAAAATAAAC ATAATTTTGT ATAATTAATT ATTTTTAAAA 361 AATTTATGAT TAAACGAGAG TTTAGAGAGT TGATTACCAA GTAGAGCAAC AGTTCCTTCA 421 GTATCAACAC CAATTGATTG AAATCTTGAA AGCACAGATG AGATTGAATC GTTGTGATTA 481 GGGAGGTACT TCTCAACTTC TGAAAAGTAA GTTTCCTTGC TATCTTTCCT TCCTGTTTTC 541 ATTTCAATTT TTATTGGCCC TCCTAACCAA AGAAGACCAT Predicted gene structure (within gDNA segment 25838 to 20594): Exon 1 25228 24973 ( 256 n); cDNA 1 257 ( 257 n); score: 0.885 Intron 1 24972 24934 ( 39 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0.60) Exon 2 24933 24891 ( 43 n); cDNA 258 302 ( 45 n); score: 0.605 Intron 2 24890 23700 (1191 n); Pd: 0.000 (s: 0.60), Pa: 0.000 (s: 0) Exon 3 23699 23670 ( 30 n); cDNA 303 332 ( 30 n); score: 0.683 Intron 3 23669 23579 ( 91 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 4 23578 23573 ( 6 n); cDNA 333 338 ( 6 n); score: 0.833 Intron 4 23572 22830 ( 743 n); Pd: 0.779 (s: 0), Pa: 0.639 (s: 0) Exon 5 22829 22795 ( 35 n); cDNA 339 370 ( 32 n); score: 0.714 MATCH C04HBa0077O05.1- SGN-E204223- 0.885 370 0.638 C PGS_C04HBa0077O05.1-_SGN-E204223- (25228 24973,24933 24891,23699 23670,23578 23573,22829 22795) Alignment (genomic DNA sequence = upper lines): TACTCAAAAT AACTTACTTT AAGTT---AA AAAAAACTTA TTTTAAGCCA AAAGTTAAAA 25172 |||||||||| |||||| ||| ||||| || |||||||||| |||||||||| |||||||||| TACTCAAAAT AACTTATTTT AAGTTAAAAA AAAAAACTTA TTTTAAGCCA AAAGTTAAAA 60 ACTGGGGTAG GGGTGTTTTT TTTTTTTAGC TTATAAGCTG TTTTAAGTTG ACCACATTTT 25112 ||||||||| ||||| || |||||||||| |||||||||| |||||||||| |||||||||| GCTGGGGTAG GGGTG--CTT TTTTTTTAGC TTATAAGCTG TTTTAAGTTG ACCACATTTT 118 TATCTTTTTG CCATTAATAT TTTTATGCAA TCTCCAAATT ACTCATATAA CTCTAACATC 25052 |||||||||| || ||||||| |||||| ||| |||||||||| | || |||| |||||||||| TATCTTTTTG CCCTTAATAT TTTTATACAA TCTCCAAATT ATCCACATAA CTCTAACATC 178 TCTTTCTTCC ATTTTTCCCT TTTCACGTTT GATATAACAA CTTCAGCACT TTTATCCAAA 24992 |||||||||| |||||||| | |||||||||| | ||| ||| ||||| |||| |||||||||| TCTTTCTTCC ATTTTTCCAT TTTCACGTTT GGCATAGCAA CTTCAACACT TTTATCCAAA 238 CGCATAACTG CTTATTTTAA AAATAAATTT CAACACTTCT AAAAGTAATT TTTTAAAGCT 24932 |||||||| | | || || TGCATAACTT TTAAAAGTA. .......... .......... .......... ........CT 259 GCTTT-TA-T TAAGCCCATC CAAACGGATC CTAAGTCCGT ATTGTTGATT TAACCAAGAT 24874 ||| | |||| ||||| ||||||| | ||||| | | | TTTTTAAAGC TAAGTCCATC CAAACGGGCC CTAAGAATGA ACT....... .......... 302 TGTGCCACCC TCTTAATACA ACCAAAGAGA GAAAAAAGAT AACCTGGTCG GCCCAAAAGT 24814 .......... .......... .......... .......... .......... .......... 302 GACCAGACCA GGTCAATCAT TATACATATA TTTTTGAAAT TTACTATTTT CTAAAAGTAC 24754 .......... .......... .......... .......... .......... .......... 302 AATATAATTA AAAAACGTAT ACAATTTATC AGTTGTTATT TTCTTAATTT GTCTAATTCT 24694 .......... .......... .......... .......... .......... .......... 302 CTTTAATTTG AAAGGGCAAC TTTCACATAT AGGAAATAAA ATATTTATAT TTGTATGCTA 24634 .......... .......... .......... .......... .......... .......... 302 TAGCAAATTT TGTATAATTG CGCTCCATAG CAAACATAAA ACTGTATAAT TCGCTATACA 24574 .......... .......... .......... .......... .......... .......... 302 TATACAAGTG TATAGTTCGC TGGCCTAAAT TGTATAATTC GCTGGCCTAT TTCGCTGCAA 24514 .......... .......... .......... .......... .......... .......... 302 TAGTATAATT CGTTATCCTA TTTCACTGCA ATTGTATAAT GCACGATTAT ATAATTAACT 24454 .......... .......... .......... .......... .......... .......... 302 GCCTATTTCG CTGCAATATT AAGTGTATAG CAAGAAGATA TATGTTTTTC TCTCGCTTTA 24394 .......... .......... .......... .......... .......... .......... 302 TACAAAAACA GAAACACAAT ATACACACTT CTGTTGTATA AAGCTAGAGA AAATTGTATT 24334 .......... .......... .......... .......... .......... .......... 302 TTACTGCAAT TGTATAATTC ACAATTGTAT AATTCTTTGA CCTTTTTCTC TGCAATATTT 24274 .......... .......... .......... .......... .......... .......... 302 GAAGTAAAAT GTTTGTAAAT TGTATAATTA AGTGTATAAC ACGAAGATAT AGATTTTTGC 24214 .......... .......... .......... .......... .......... .......... 302 ATGTGTATAT ACAATTTTCT CTCGCTTTAT ACAAAACAGA AACATAATTA TACACTTCTG 24154 .......... .......... .......... .......... .......... .......... 302 TGTATAAAGC GAGAGAGGCG AGCGAGAATG GAGAGTGGCG AGCGAGATTT CTGGGAGAGA 24094 .......... .......... .......... .......... .......... .......... 302 GGCGCTGGCA AATTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA ACCCTAACTA 24034 .......... .......... .......... .......... .......... .......... 302 TTCCATTTAT TTTAGGTTGT TAGTTTGCTA TTATATACAA TTTTCCCAAT TTGAAATCAA 23974 .......... .......... .......... .......... .......... .......... 302 TAATGTTTGA GTATTGATTC TATAAGAATA TCTTCAATTA TTTGGTATCT TCTTAGATAT 23914 .......... .......... .......... .......... .......... .......... 302 TTCAAGCTTA AACTAATTAA ATTTATCGAA TAATTAAATT TTAAAAGACG TAATCTTAAC 23854 .......... .......... .......... .......... .......... .......... 302 TTTAAATGTG ATCTAAAGTG TAACGATCAC TTCTTTCGAG TTTTTGGCCA AAATCATTTT 23794 .......... .......... .......... .......... .......... .......... 302 TAAACTATAC CTCAGACTCA AACTACATCC TTAAAGTATC ATTCTTACCA TGAAACATCC 23734 .......... .......... .......... .......... .......... .......... 302 TTAAAGTATT TTAAAGTTAA TAATTTTCAT CCTTCTACTT GAATTTATC- ATAAAACTAA 23675 |||| | |||||| || || ||| ||| .......... .......... .......... ....CTACAT GAATTTTTCG ATCAAAATAA 328 TTGATATATC CTACAAAATT TAAGTTGTCC CTTCCTAATT ATTATTCTTA GATATGCCAA 23615 || -ACAT..... .......... .......... .......... .......... .......... 332 GAATATTATC CTGAACTTTT TCGTAATTGA CTTAAGAATT ATGTAAAATC TTTTAATTTG 23555 |||| | .......... .......... .......... ......AATT TT........ .......... 338 ACCTTTTTTT TTTTTTTTCA TTTTTCATGT AATTTTAATT AAAAAATATT ATTAGTTTAG 23495 .......... .......... .......... .......... .......... .......... 338 ATATGTTTCT TCTTAATTGA ATATGCTAGA AACGACATTT GTTGGAGACT TCCGCTTCTA 23435 .......... .......... .......... .......... .......... .......... 338 ATAATGTAGA ATGAAACTCA AATACGATAC ATAATCAATA TTTAGTCACT TTAATATTAG 23375 .......... .......... .......... .......... .......... .......... 338 ATTGACCCAA AAATCTATTA ATTTAATTGG TTAAGAAAAA GGTAAAATAA TTAATCTCCA 23315 .......... .......... .......... .......... .......... .......... 338 ACTTTTTTTC GTTACGAAAA AGGCAAATCA TATACGCTCA CACCTTCCAA TCATTTTTAG 23255 .......... .......... .......... .......... .......... .......... 338 GTTCCATAAG CAACTGTGTT TGAGATTTTT TTATGTTTTT CAAGAACTTC TTATAGAAAG 23195 .......... .......... .......... .......... .......... .......... 338 TAATGAAATT ATTTTGTTGA AAGTCACGTT AACTGCTCAT GTTTTCGTAA GATCCATTAA 23135 .......... .......... .......... .......... .......... .......... 338 TGTTTGGACA TATCTAACAA AAGGATGAAA GTTGTTTACT TACAAATACT TAAAGGATGT 23075 .......... .......... .......... .......... .......... .......... 338 ATTTTGCTAA AAATGATACT TTACAGATGT AGTTTAAATT TGGGATATAG TTAAAGGATG 23015 .......... .......... .......... .......... .......... .......... 338 TTTTCTGTTA AAACTGATTC TTTAAAGATG TAGTATGAGT TTATAGTATA GTTGAAGGAT 22955 .......... .......... .......... .......... .......... .......... 338 GTTTTAGAAA TATTATACAA AATAAAAAAA ATAATACTCT ATTTGGCATA TACTCAATTA 22895 .......... .......... .......... .......... .......... .......... 338 GACGAAATCG TAACCCTATT ATTAAATACT TCTACAATAA TTTTGATAAA TATGTGCAAT 22835 .......... .......... .......... .......... .......... .......... 338 AACAGGGCTA ATTGAAAAAG TTTTTTAAAA AAACTATAAT 22795 | || ||| || | ||||||||| || ||| || .....GTATA ATT-AATTA- -TTTTTAAAA AATTTATGAT 370 hqPGS_C04HBa0077O05.1-_SGN-E204223- (25228 24973,24933 24891,23699 23670,23578 23573,22829 22795) ******************************************************************************** EST sequence 55 -strand 554 n (File: SGN-E374844-) 1 AAAAAAAAAA CTTATATTAA GCCAAAAGTT AAAAGCTGGG GTAGGGGTGC TTTTTTTTTA 61 GCTTATAAGC TGTTTTAAGT TGACCACATT TTTATCTTTT TGCCCTTAAT ATTTTTATAC 121 AATCTCCAAA TTATCCACAT AACTCTAACA TCTCTTTCTT CCATTTTTCC ATTTTCACGT 181 TTGGCATAGC AACTTCAACA CTTTTATCCA AATGCATAAC TTTTAAAAGT ACTTTTTTAA 241 AGCTAAGTCC ATCCAAACGG GCCCTAAGAA TGAACTCTAC ATGAATTTTT CGATCAAAAT 301 AAACATAATT TTGTATAATT AATTATTTTT AAAAAATTTA TGATTAAACG AGAGTTTAGA 361 GAGTTGATTA CCAAGTAGAG CAACAGTTCC TTCAGTATCA ACACCAATTG ATTGAAATCT 421 TGAAAGCACA GATGAGATTG AATCGTTGTG ATTAGGGAGG TACTTCTCAA CTTCTGAAAA 481 GTAAGTTTCC TTGCTATCTT TCCTTCCTGT TTTCATTTCA ATTTTTATTG GCCCTCCTAA 541 CCAAAGAAGA CCAT Predicted gene structure (within gDNA segment 25959 to 20594): Exon 1 25203 24973 ( 231 n); cDNA 3 231 ( 229 n); score: 0.905 Intron 1 24972 24934 ( 39 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0.60) Exon 2 24933 24891 ( 43 n); cDNA 232 276 ( 45 n); score: 0.605 Intron 2 24890 23700 (1191 n); Pd: 0.000 (s: 0.60), Pa: 0.000 (s: 0) Exon 3 23699 23670 ( 30 n); cDNA 277 306 ( 30 n); score: 0.683 Intron 3 23669 23579 ( 91 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 4 23578 23573 ( 6 n); cDNA 307 312 ( 6 n); score: 0.833 Intron 4 23572 22830 ( 743 n); Pd: 0.779 (s: 0), Pa: 0.639 (s: 0) Exon 5 22829 22795 ( 35 n); cDNA 313 344 ( 32 n); score: 0.714 MATCH C04HBa0077O05.1- SGN-E374844- 0.905 345 0.623 C PGS_C04HBa0077O05.1-_SGN-E374844- (25203 24973,24933 24891,23699 23670,23578 23573,22829 22795) Alignment (genomic DNA sequence = upper lines): AAAAAAAACT TATTTTAAGC CAAAAGTTAA AAACTGGGGT AGGGGTGTTT TTTTTTTTTA 25144 |||||||||| ||| |||||| |||||||||| || ||||||| ||||||| |||||||||| AAAAAAAACT TATATTAAGC CAAAAGTTAA AAGCTGGGGT AGGGGTG--C TTTTTTTTTA 60 GCTTATAAGC TGTTTTAAGT TGACCACATT TTTATCTTTT TGCCATTAAT ATTTTTATGC 25084 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||| | GCTTATAAGC TGTTTTAAGT TGACCACATT TTTATCTTTT TGCCCTTAAT ATTTTTATAC 120 AATCTCCAAA TTACTCATAT AACTCTAACA TCTCTTTCTT CCATTTTTCC CTTTTCACGT 25024 |||||||||| ||| || || |||||||||| |||||||||| |||||||||| ||||||||| AATCTCCAAA TTATCCACAT AACTCTAACA TCTCTTTCTT CCATTTTTCC ATTTTCACGT 180 TTGATATAAC AACTTCAGCA CTTTTATCCA AACGCATAAC TGCTTATTTT AAAAATAAAT 24964 ||| ||| | ||||||| || |||||||||| || ||||||| | | | | | TTGGCATAGC AACTTCAACA CTTTTATCCA AATGCATAAC TTTTAAAAGT A......... 231 TTCAACACTT CTAAAAGTAA TTTTTTAAAG CTGCTTT-TA -TTAAGCCCA TCCAAACGGA 24906 || ||| | |||| ||| ||||||||| .......... .......... .......... CTTTTTTAAA GCTAAGTCCA TCCAAACGGG 261 TCCTAAGTCC GTATTGTTGA TTTAACCAAG ATTGTGCCAC CCTCTTAATA CAACCAAAGA 24846 |||||| | | | CCCTAAGAAT GAACT..... .......... .......... .......... .......... 276 GAGAAAAAAG ATAACCTGGT CGGCCCAAAA GTGACCAGAC CAGGTCAATC ATTATACATA 24786 .......... .......... .......... .......... .......... .......... 276 TATTTTTGAA ATTTACTATT TTCTAAAAGT ACAATATAAT TAAAAAACGT ATACAATTTA 24726 .......... .......... .......... .......... .......... .......... 276 TCAGTTGTTA TTTTCTTAAT TTGTCTAATT CTCTTTAATT TGAAAGGGCA ACTTTCACAT 24666 .......... .......... .......... .......... .......... .......... 276 ATAGGAAATA AAATATTTAT ATTTGTATGC TATAGCAAAT TTTGTATAAT TGCGCTCCAT 24606 .......... .......... .......... .......... .......... .......... 276 AGCAAACATA AAACTGTATA ATTCGCTATA CATATACAAG TGTATAGTTC GCTGGCCTAA 24546 .......... .......... .......... .......... .......... .......... 276 ATTGTATAAT TCGCTGGCCT ATTTCGCTGC AATAGTATAA TTCGTTATCC TATTTCACTG 24486 .......... .......... .......... .......... .......... .......... 276 CAATTGTATA ATGCACGATT ATATAATTAA CTGCCTATTT CGCTGCAATA TTAAGTGTAT 24426 .......... .......... .......... .......... .......... .......... 276 AGCAAGAAGA TATATGTTTT TCTCTCGCTT TATACAAAAA CAGAAACACA ATATACACAC 24366 .......... .......... .......... .......... .......... .......... 276 TTCTGTTGTA TAAAGCTAGA GAAAATTGTA TTTTACTGCA ATTGTATAAT TCACAATTGT 24306 .......... .......... .......... .......... .......... .......... 276 ATAATTCTTT GACCTTTTTC TCTGCAATAT TTGAAGTAAA ATGTTTGTAA ATTGTATAAT 24246 .......... .......... .......... .......... .......... .......... 276 TAAGTGTATA ACACGAAGAT ATAGATTTTT GCATGTGTAT ATACAATTTT CTCTCGCTTT 24186 .......... .......... .......... .......... .......... .......... 276 ATACAAAACA GAAACATAAT TATACACTTC TGTGTATAAA GCGAGAGAGG CGAGCGAGAA 24126 .......... .......... .......... .......... .......... .......... 276 TGGAGAGTGG CGAGCGAGAT TTCTGGGAGA GAGGCGCTGG CAAATTTTAG CTAACGTTTG 24066 .......... .......... .......... .......... .......... .......... 276 CTATGGAGCA CAATTAAATC AAACCCTAAC TATTCCATTT ATTTTAGGTT GTTAGTTTGC 24006 .......... .......... .......... .......... .......... .......... 276 TATTATATAC AATTTTCCCA ATTTGAAATC AATAATGTTT GAGTATTGAT TCTATAAGAA 23946 .......... .......... .......... .......... .......... .......... 276 TATCTTCAAT TATTTGGTAT CTTCTTAGAT ATTTCAAGCT TAAACTAATT AAATTTATCG 23886 .......... .......... .......... .......... .......... .......... 276 AATAATTAAA TTTTAAAAGA CGTAATCTTA ACTTTAAATG TGATCTAAAG TGTAACGATC 23826 .......... .......... .......... .......... .......... .......... 276 ACTTCTTTCG AGTTTTTGGC CAAAATCATT TTTAAACTAT ACCTCAGACT CAAACTACAT 23766 .......... .......... .......... .......... .......... .......... 276 CCTTAAAGTA TCATTCTTAC CATGAAACAT CCTTAAAGTA TTTTAAAGTT AATAATTTTC 23706 .......... .......... .......... .......... .......... .......... 276 ATCCTTCTAC TTGAATTTAT C-ATAAAACT AATTGATATA TCCTACAAAA TTTAAGTTGT 23647 |||| ||||||| | | || ||| | || || ......CTAC ATGAATTTTT CGATCAAAAT AA-ACAT... .......... .......... 306 CCCTTCCTAA TTATTATTCT TAGATATGCC AAGAATATTA TCCTGAACTT TTTCGTAATT 23587 .......... .......... .......... .......... .......... .......... 306 GACTTAAGAA TTATGTAAAA TCTTTTAATT TGACCTTTTT TTTTTTTTTT CATTTTTCAT 23527 || || | ........AA TTTT...... .......... .......... .......... .......... 312 GTAATTTTAA TTAAAAAATA TTATTAGTTT AGATATGTTT CTTCTTAATT GAATATGCTA 23467 .......... .......... .......... .......... .......... .......... 312 GAAACGACAT TTGTTGGAGA CTTCCGCTTC TAATAATGTA GAATGAAACT CAAATACGAT 23407 .......... .......... .......... .......... .......... .......... 312 ACATAATCAA TATTTAGTCA CTTTAATATT AGATTGACCC AAAAATCTAT TAATTTAATT 23347 .......... .......... .......... .......... .......... .......... 312 GGTTAAGAAA AAGGTAAAAT AATTAATCTC CAACTTTTTT TCGTTACGAA AAAGGCAAAT 23287 .......... .......... .......... .......... .......... .......... 312 CATATACGCT CACACCTTCC AATCATTTTT AGGTTCCATA AGCAACTGTG TTTGAGATTT 23227 .......... .......... .......... .......... .......... .......... 312 TTTTATGTTT TTCAAGAACT TCTTATAGAA AGTAATGAAA TTATTTTGTT GAAAGTCACG 23167 .......... .......... .......... .......... .......... .......... 312 TTAACTGCTC ATGTTTTCGT AAGATCCATT AATGTTTGGA CATATCTAAC AAAAGGATGA 23107 .......... .......... .......... .......... .......... .......... 312 AAGTTGTTTA CTTACAAATA CTTAAAGGAT GTATTTTGCT AAAAATGATA CTTTACAGAT 23047 .......... .......... .......... .......... .......... .......... 312 GTAGTTTAAA TTTGGGATAT AGTTAAAGGA TGTTTTCTGT TAAAACTGAT TCTTTAAAGA 22987 .......... .......... .......... .......... .......... .......... 312 TGTAGTATGA GTTTATAGTA TAGTTGAAGG ATGTTTTAGA AATATTATAC AAAATAAAAA 22927 .......... .......... .......... .......... .......... .......... 312 AAATAATACT CTATTTGGCA TATACTCAAT TAGACGAAAT CGTAACCCTA TTATTAAATA 22867 .......... .......... .......... .......... .......... .......... 312 CTTCTACAAT AATTTTGATA AATATGTGCA ATAACAGGGC TAATTGAAAA AGTTTTTTAA 22807 | ||||| || | ||||||| .......... .......... .......... .......GTA TAATT-AATT A--TTTTTAA 332 AAAAACTATA AT 22795 |||| ||| || AAAATTTATG AT 344 hqPGS_C04HBa0077O05.1-_SGN-E374844- (25203 24973,24933 24891,23699 23670,23578 23573,22829 22795) ******************************************************************************** EST sequence 174 +strand 715 n (File: SGN-E550335+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAATCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTCNAC CATGAATTAA TGAAAAAATT ATGCCATAAA 661 ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 28654 to 20910): Exon 1 27569 27003 ( 567 n); cDNA 2 565 ( 564 n); score: 0.868 Intron 1 27002 23523 (3480 n); Pd: 0.949 (s: 0.80), Pa: 0.000 (s: 0) Exon 2 23522 23495 ( 28 n); cDNA 566 593 ( 28 n); score: 0.750 Intron 2 23494 21947 (1548 n); Pd: 0.000 (s: 0), Pa: 0.649 (s: 0) Exon 3 21946 21917 ( 30 n); cDNA 594 623 ( 30 n); score: 0.617 PPA cDNA 698 715 MATCH C04HBa0077O05.1- SGN-E550335+ 0.868 625 0.874 C PGS_C04HBa0077O05.1-_SGN-E550335+ (27569 27003,23522 23495,21946 21917) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||| | |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAA-C CCTCCTTCTT 59 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 178 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 238 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 297 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| ||||| |||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAATCTG TGACGGTCCG TCACGCCCGT 357 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGATT-TCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||||| | || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 416 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 475 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 535 CGACTAAACA GGTCGTTACA ATAAATATTA GGTATAATAG ATAAATTTAT CATTTTACCT 26974 |||||||||| ||||||||| || || || CGACTAAACA GGTCGTTAC- ATTTATGTTC T......... .......... .......... 565 GATCTTATTT CACATGTATG TCATCTATTT TTAGGTGTGT ATAAATAGAT ATTTAAATTA 26914 .......... .......... .......... .......... .......... .......... 565 AATTTGTATA AAGTTGAAGT AGACACTGAA TTCTACGAGA CATAATACAA GTAAGAGATC 26854 .......... .......... .......... .......... .......... .......... 565 TAGGACGCAA ATTGTCATGT AAGATGACAC GCAAAAATGT GTGTATTTAT TTATTCAACG 26794 .......... .......... .......... .......... .......... .......... 565 AATTTATAGA AATATAAGTA TCTACTCGTG CACACTCAAA AATAAAGAAT ATAAATATAA 26734 .......... .......... .......... .......... .......... .......... 565 GTGATAAGAG CATATTTATA TATTATGTCT AACTATTAAT TTGATGTCCG TTGATCACAT 26674 .......... .......... .......... .......... .......... .......... 565 AAAAATTGAA CCAAATGAAT CATTTCCTAC TTATTCTTAA TATACTTAAA TTAGTTATCT 26614 .......... .......... .......... .......... .......... .......... 565 TCCATTATAA CATATACAAT TCATTCATTA TTCGTAACTA TCCTTTGTAA ATATAGGTGC 26554 .......... .......... .......... .......... .......... .......... 565 ATCGTATGTT TAATATATGG ATGAAATATT AATGAAGATG TATAAATTTT ATACGAGAGT 26494 .......... .......... .......... .......... .......... .......... 565 TATACCATTA AAATTAAAAT TTATAATGCT TGGTATAAAA TTATACCAAG AAAAATGTTT 26434 .......... .......... .......... .......... .......... .......... 565 TGCATGAATA TCATCTTAAA CAAAACAACA CACAAATATG CAATTCGAAT GTGCATAGAA 26374 .......... .......... .......... .......... .......... .......... 565 CCAAATATCC CATAAATTTA AGGTCAATGA GCTAGAGTTC ACCCAGGCAA GCAGCCTTAT 26314 .......... .......... .......... .......... .......... .......... 565 TTCCCCCCCC AAATTTAGGC CTTATTTTTT TTCTTTAAGA TTAACATGTC TGAATTTGAA 26254 .......... .......... .......... .......... .......... .......... 565 TAAACATTTG AATAATTTTG TGTCTAAGTT TAAACATTAA ATGATTAATA TTATTTATTT 26194 .......... .......... .......... .......... .......... .......... 565 TTTATCATCT GAATATGAGT AATTATTTAT AATTAAACAT TATAAATATA TAATTTAAAA 26134 .......... .......... .......... .......... .......... .......... 565 TAAGAAAGTA ATTAACCATC GTTTTTTTTT TTCTCAAAGC ATATTTAAAA AGAGGAGGTT 26074 .......... .......... .......... .......... .......... .......... 565 GTTCGATTTT GTAACTACAC AATTAAGAAT AAAACGGTAC TTGCCGATGA TAAAATATCT 26014 .......... .......... .......... .......... .......... .......... 565 ACTTTGAATG CTCTTCTTTC AAAAATTAGT GTGTATAATG AATTTTTTTT AAAAAAAAGA 25954 .......... .......... .......... .......... .......... .......... 565 TATATTTACA TTAGATATGA TGCAGTTAAA CAGTTATTGA AACATGAGGT TATTTTCTTA 25894 .......... .......... .......... .......... .......... .......... 565 GAATGTGTAA GGTCCTAAAA GTTATTTGTA ATCTTTTAAC TAAGGAATTT GACTTGAAAA 25834 .......... .......... .......... .......... .......... .......... 565 TGAATAAATG GTCTTTACCT CGAAGGAGAT GAAACGGGAT GGTGCTAAAG CCCATTGATT 25774 .......... .......... .......... .......... .......... .......... 565 GAGATAATAT GACACAAGGC CATATTTTTT GATGCAGATA GTAGGGGCGA TTCAACTCTA 25714 .......... .......... .......... .......... .......... .......... 565 AAGCCACTAA AGTAATGACT TTAGGCTTCC AAAATATAAC GCCTCAAATT TATTTAATGT 25654 .......... .......... .......... .......... .......... .......... 565 TACAGATATA CAAATATAAA TATACTTATA ATTATGTATC TATAATTAGT ATTAATTGAA 25594 .......... .......... .......... .......... .......... .......... 565 ATTTTCTTAA TAGTTTCTAA TCATGGGCGA ATCCACATGT AAAGGTGGGG TGTACGTCCA 25534 .......... .......... .......... .......... .......... .......... 565 CTCGTTAACT TCGAAAAATC ATGTATAAAT ATATATATAT TGAGAAACTG ATAAGGAAAA 25474 .......... .......... .......... .......... .......... .......... 565 AAAATATAAT AAAAAATGCA ACCTTAATGA ACATTGAACT GGTCTTGATT TGCTGATAGA 25414 .......... .......... .......... .......... .......... .......... 565 AATAAGAAAA TACCTCCTTG CAGACCTAGA TTTCAATCCT GATCAATAAG TCACTATCCT 25354 .......... .......... .......... .......... .......... .......... 565 ATTCAAATCT TGGCTTCGCC TATATTTTGT GTTAAATTTG AACACTAAGA GCCTGTTTGG 25294 .......... .......... .......... .......... .......... .......... 565 CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT TTAGTTGTTT 25234 .......... .......... .......... .......... .......... .......... 565 GGCAATACTC AAAATAACTT ACTTTAAGTT AAAAAAAACT TATTTTAAGC CAAAAGTTAA 25174 .......... .......... .......... .......... .......... .......... 565 AAACTGGGGT AGGGGTGTTT TTTTTTTTTA GCTTATAAGC TGTTTTAAGT TGACCACATT 25114 .......... .......... .......... .......... .......... .......... 565 TTTATCTTTT TGCCATTAAT ATTTTTATGC AATCTCCAAA TTACTCATAT AACTCTAACA 25054 .......... .......... .......... .......... .......... .......... 565 TCTCTTTCTT CCATTTTTCC CTTTTCACGT TTGATATAAC AACTTCAGCA CTTTTATCCA 24994 .......... .......... .......... .......... .......... .......... 565 AACGCATAAC TGCTTATTTT AAAAATAAAT TTCAACACTT CTAAAAGTAA TTTTTTAAAG 24934 .......... .......... .......... .......... .......... .......... 565 CTGCTTTTAT TAAGCCCATC CAAACGGATC CTAAGTCCGT ATTGTTGATT TAACCAAGAT 24874 .......... .......... .......... .......... .......... .......... 565 TGTGCCACCC TCTTAATACA ACCAAAGAGA GAAAAAAGAT AACCTGGTCG GCCCAAAAGT 24814 .......... .......... .......... .......... .......... .......... 565 GACCAGACCA GGTCAATCAT TATACATATA TTTTTGAAAT TTACTATTTT CTAAAAGTAC 24754 .......... .......... .......... .......... .......... .......... 565 AATATAATTA AAAAACGTAT ACAATTTATC AGTTGTTATT TTCTTAATTT GTCTAATTCT 24694 .......... .......... .......... .......... .......... .......... 565 CTTTAATTTG AAAGGGCAAC TTTCACATAT AGGAAATAAA ATATTTATAT TTGTATGCTA 24634 .......... .......... .......... .......... .......... .......... 565 TAGCAAATTT TGTATAATTG CGCTCCATAG CAAACATAAA ACTGTATAAT TCGCTATACA 24574 .......... .......... .......... .......... .......... .......... 565 TATACAAGTG TATAGTTCGC TGGCCTAAAT TGTATAATTC GCTGGCCTAT TTCGCTGCAA 24514 .......... .......... .......... .......... .......... .......... 565 TAGTATAATT CGTTATCCTA TTTCACTGCA ATTGTATAAT GCACGATTAT ATAATTAACT 24454 .......... .......... .......... .......... .......... .......... 565 GCCTATTTCG CTGCAATATT AAGTGTATAG CAAGAAGATA TATGTTTTTC TCTCGCTTTA 24394 .......... .......... .......... .......... .......... .......... 565 TACAAAAACA GAAACACAAT ATACACACTT CTGTTGTATA AAGCTAGAGA AAATTGTATT 24334 .......... .......... .......... .......... .......... .......... 565 TTACTGCAAT TGTATAATTC ACAATTGTAT AATTCTTTGA CCTTTTTCTC TGCAATATTT 24274 .......... .......... .......... .......... .......... .......... 565 GAAGTAAAAT GTTTGTAAAT TGTATAATTA AGTGTATAAC ACGAAGATAT AGATTTTTGC 24214 .......... .......... .......... .......... .......... .......... 565 ATGTGTATAT ACAATTTTCT CTCGCTTTAT ACAAAACAGA AACATAATTA TACACTTCTG 24154 .......... .......... .......... .......... .......... .......... 565 TGTATAAAGC GAGAGAGGCG AGCGAGAATG GAGAGTGGCG AGCGAGATTT CTGGGAGAGA 24094 .......... .......... .......... .......... .......... .......... 565 GGCGCTGGCA AATTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA ACCCTAACTA 24034 .......... .......... .......... .......... .......... .......... 565 TTCCATTTAT TTTAGGTTGT TAGTTTGCTA TTATATACAA TTTTCCCAAT TTGAAATCAA 23974 .......... .......... .......... .......... .......... .......... 565 TAATGTTTGA GTATTGATTC TATAAGAATA TCTTCAATTA TTTGGTATCT TCTTAGATAT 23914 .......... .......... .......... .......... .......... .......... 565 TTCAAGCTTA AACTAATTAA ATTTATCGAA TAATTAAATT TTAAAAGACG TAATCTTAAC 23854 .......... .......... .......... .......... .......... .......... 565 TTTAAATGTG ATCTAAAGTG TAACGATCAC TTCTTTCGAG TTTTTGGCCA AAATCATTTT 23794 .......... .......... .......... .......... .......... .......... 565 TAAACTATAC CTCAGACTCA AACTACATCC TTAAAGTATC ATTCTTACCA TGAAACATCC 23734 .......... .......... .......... .......... .......... .......... 565 TTAAAGTATT TTAAAGTTAA TAATTTTCAT CCTTCTACTT GAATTTATCA TAAAACTAAT 23674 .......... .......... .......... .......... .......... .......... 565 TGATATATCC TACAAAATTT AAGTTGTCCC TTCCTAATTA TTATTCTTAG ATATGCCAAG 23614 .......... .......... .......... .......... .......... .......... 565 AATATTATCC TGAACTTTTT CGTAATTGAC TTAAGAATTA TGTAAAATCT TTTAATTTGA 23554 .......... .......... .......... .......... .......... .......... 565 CCTTTTTTTT TTTTTTTCAT TTTTCATGTA ATTTTAATTA AAAAATATTA TTAGTTTAGA 23494 | || ||| || | ||||| ||| |||| .......... .......... .......... .TCCTACTTA AATATTATTA TTATTTTAC. 593 TATGTTTCTT CTTAATTGAA TATGCTAGAA ACGACATTTG TTGGAGACTT CCGCTTCTAA 23434 .......... .......... .......... .......... .......... .......... 593 TAATGTAGAA TGAAACTCAA ATACGATACA TAATCAATAT TTAGTCACTT TAATATTAGA 23374 .......... .......... .......... .......... .......... .......... 593 TTGACCCAAA AATCTATTAA TTTAATTGGT TAAGAAAAAG GTAAAATAAT TAATCTCCAA 23314 .......... .......... .......... .......... .......... .......... 593 CTTTTTTTCG TTACGAAAAA GGCAAATCAT ATACGCTCAC ACCTTCCAAT CATTTTTAGG 23254 .......... .......... .......... .......... .......... .......... 593 TTCCATAAGC AACTGTGTTT GAGATTTTTT TATGTTTTTC AAGAACTTCT TATAGAAAGT 23194 .......... .......... .......... .......... .......... .......... 593 AATGAAATTA TTTTGTTGAA AGTCACGTTA ACTGCTCATG TTTTCGTAAG ATCCATTAAT 23134 .......... .......... .......... .......... .......... .......... 593 GTTTGGACAT ATCTAACAAA AGGATGAAAG TTGTTTACTT ACAAATACTT AAAGGATGTA 23074 .......... .......... .......... .......... .......... .......... 593 TTTTGCTAAA AATGATACTT TACAGATGTA GTTTAAATTT GGGATATAGT TAAAGGATGT 23014 .......... .......... .......... .......... .......... .......... 593 TTTCTGTTAA AACTGATTCT TTAAAGATGT AGTATGAGTT TATAGTATAG TTGAAGGATG 22954 .......... .......... .......... .......... .......... .......... 593 TTTTAGAAAT ATTATACAAA ATAAAAAAAA TAATACTCTA TTTGGCATAT ACTCAATTAG 22894 .......... .......... .......... .......... .......... .......... 593 ACGAAATCGT AACCCTATTA TTAAATACTT CTACAATAAT TTTGATAAAT ATGTGCAATA 22834 .......... .......... .......... .......... .......... .......... 593 ACAGGGCTAA TTGAAAAAGT TTTTTAAAAA AACTATAATG CGTAAGAACT TATCTAAACA 22774 .......... .......... .......... .......... .......... .......... 593 CTTGTAATAT TTATGTGACA TACAATAATT TATATATATT TATTCATATC TTACGAAATA 22714 .......... .......... .......... .......... .......... .......... 593 TACAACAAAT ATTATATTGT CAAATGAAGA AGAAAAAATT AATTATCGAA TTACAATTAA 22654 .......... .......... .......... .......... .......... .......... 593 CTACTATGTA TTTTAAAAAG TTATGAAGAA AAATGTTATA AGGAACTAGA GGAGTATTCC 22594 .......... .......... .......... .......... .......... .......... 593 CCGTGTATAC AGCATAGTTT ATAGCTGAAA AAATATGGGA ATCAGAGCCA TTTCTTTGTT 22534 .......... .......... .......... .......... .......... .......... 593 ATTGGTGATT GATTGTAGAG GAAAAATCAA AATGGGTTAT TGCTTTAAAA CTAAAATGTA 22474 .......... .......... .......... .......... .......... .......... 593 AACTATGATC TCTTAATGTT ATAGTTATAG TAGATCCTCA TATTTTTCAA AAGTCAATTT 22414 .......... .......... .......... .......... .......... .......... 593 TTTCATATTT TTCAAAAGTC ATTTTTTTGT TTGGTTATAG TAGATTCTCA TATTTTTCAA 22354 .......... .......... .......... .......... .......... .......... 593 ATTTGATTGT AAAACTATCC TTGCTTACTT TAGATATTTT TGCATGAAAA TATGATTGAA 22294 .......... .......... .......... .......... .......... .......... 593 ATGGTTGAAT TTCAACTATT TTTATATTTA AAACTAAAAT GATTGCTTAG CGTTCAGTTA 22234 .......... .......... .......... .......... .......... .......... 593 CGGTAGATTT TCATATTTTT CAAAAGATAA TTCATATTTT TCAAAAGTCA TTTTTTGTTG 22174 .......... .......... .......... .......... .......... .......... 593 AAATTTCACT ATGCATTTGA TTATAAACTT TAGGTATTTT TGCATGAAAT ATGATTGAAT 22114 .......... .......... .......... .......... .......... .......... 593 TTCAACTACA AGTATAAGTA TATGTATTTG CAATAAATTT TAAAGCGTTG AAGAATAAAT 22054 .......... .......... .......... .......... .......... .......... 593 TAAGGACCAA TAAAATATAA AGAAATATAA TTTTATTGAT GAAATAAATG TAGATACAAA 21994 .......... .......... .......... .......... .......... .......... 593 TTTGTTAATC CCTTATTATT CTCTTTAACT TCCACAAATT ATTACAGGAA AAAT-GCACT 21935 || || |||| .......... .......... .......... .......... .......GAT TTATAACACT 606 CATCATAAAA AAGGATTT 21917 || | ||| || ||||| -ATTAGAAAC AAAGATTT 623 hqPGS_C04HBa0077O05.1-_SGN-E550335+ (27569 27003,23522 23495) ******************************************************************************** EST sequence 197 +strand 717 n (File: SGN-E550484+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 28664 to 20900): Exon 1 27569 27003 ( 567 n); cDNA 2 566 ( 565 n); score: 0.871 Intron 1 27002 23523 (3480 n); Pd: 0.949 (s: 0.80), Pa: 0.000 (s: 0) Exon 2 23522 23495 ( 28 n); cDNA 567 594 ( 28 n); score: 0.750 Intron 2 23494 21947 (1548 n); Pd: 0.000 (s: 0), Pa: 0.649 (s: 0) Exon 3 21946 21917 ( 30 n); cDNA 595 624 ( 30 n); score: 0.617 PPA cDNA 699 717 MATCH C04HBa0077O05.1- SGN-E550484+ 0.871 625 0.872 C PGS_C04HBa0077O05.1-_SGN-E550484+ (27569 27003,23522 23495,21946 21917) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 417 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACA GGTCGTTACA ATAAATATTA GGTATAATAG ATAAATTTAT CATTTTACCT 26974 |||||||||| ||||||||| || || || CGACTAAACA GGTCGTTAC- ATTTATGTTC T......... .......... .......... 566 GATCTTATTT CACATGTATG TCATCTATTT TTAGGTGTGT ATAAATAGAT ATTTAAATTA 26914 .......... .......... .......... .......... .......... .......... 566 AATTTGTATA AAGTTGAAGT AGACACTGAA TTCTACGAGA CATAATACAA GTAAGAGATC 26854 .......... .......... .......... .......... .......... .......... 566 TAGGACGCAA ATTGTCATGT AAGATGACAC GCAAAAATGT GTGTATTTAT TTATTCAACG 26794 .......... .......... .......... .......... .......... .......... 566 AATTTATAGA AATATAAGTA TCTACTCGTG CACACTCAAA AATAAAGAAT ATAAATATAA 26734 .......... .......... .......... .......... .......... .......... 566 GTGATAAGAG CATATTTATA TATTATGTCT AACTATTAAT TTGATGTCCG TTGATCACAT 26674 .......... .......... .......... .......... .......... .......... 566 AAAAATTGAA CCAAATGAAT CATTTCCTAC TTATTCTTAA TATACTTAAA TTAGTTATCT 26614 .......... .......... .......... .......... .......... .......... 566 TCCATTATAA CATATACAAT TCATTCATTA TTCGTAACTA TCCTTTGTAA ATATAGGTGC 26554 .......... .......... .......... .......... .......... .......... 566 ATCGTATGTT TAATATATGG ATGAAATATT AATGAAGATG TATAAATTTT ATACGAGAGT 26494 .......... .......... .......... .......... .......... .......... 566 TATACCATTA AAATTAAAAT TTATAATGCT TGGTATAAAA TTATACCAAG AAAAATGTTT 26434 .......... .......... .......... .......... .......... .......... 566 TGCATGAATA TCATCTTAAA CAAAACAACA CACAAATATG CAATTCGAAT GTGCATAGAA 26374 .......... .......... .......... .......... .......... .......... 566 CCAAATATCC CATAAATTTA AGGTCAATGA GCTAGAGTTC ACCCAGGCAA GCAGCCTTAT 26314 .......... .......... .......... .......... .......... .......... 566 TTCCCCCCCC AAATTTAGGC CTTATTTTTT TTCTTTAAGA TTAACATGTC TGAATTTGAA 26254 .......... .......... .......... .......... .......... .......... 566 TAAACATTTG AATAATTTTG TGTCTAAGTT TAAACATTAA ATGATTAATA TTATTTATTT 26194 .......... .......... .......... .......... .......... .......... 566 TTTATCATCT GAATATGAGT AATTATTTAT AATTAAACAT TATAAATATA TAATTTAAAA 26134 .......... .......... .......... .......... .......... .......... 566 TAAGAAAGTA ATTAACCATC GTTTTTTTTT TTCTCAAAGC ATATTTAAAA AGAGGAGGTT 26074 .......... .......... .......... .......... .......... .......... 566 GTTCGATTTT GTAACTACAC AATTAAGAAT AAAACGGTAC TTGCCGATGA TAAAATATCT 26014 .......... .......... .......... .......... .......... .......... 566 ACTTTGAATG CTCTTCTTTC AAAAATTAGT GTGTATAATG AATTTTTTTT AAAAAAAAGA 25954 .......... .......... .......... .......... .......... .......... 566 TATATTTACA TTAGATATGA TGCAGTTAAA CAGTTATTGA AACATGAGGT TATTTTCTTA 25894 .......... .......... .......... .......... .......... .......... 566 GAATGTGTAA GGTCCTAAAA GTTATTTGTA ATCTTTTAAC TAAGGAATTT GACTTGAAAA 25834 .......... .......... .......... .......... .......... .......... 566 TGAATAAATG GTCTTTACCT CGAAGGAGAT GAAACGGGAT GGTGCTAAAG CCCATTGATT 25774 .......... .......... .......... .......... .......... .......... 566 GAGATAATAT GACACAAGGC CATATTTTTT GATGCAGATA GTAGGGGCGA TTCAACTCTA 25714 .......... .......... .......... .......... .......... .......... 566 AAGCCACTAA AGTAATGACT TTAGGCTTCC AAAATATAAC GCCTCAAATT TATTTAATGT 25654 .......... .......... .......... .......... .......... .......... 566 TACAGATATA CAAATATAAA TATACTTATA ATTATGTATC TATAATTAGT ATTAATTGAA 25594 .......... .......... .......... .......... .......... .......... 566 ATTTTCTTAA TAGTTTCTAA TCATGGGCGA ATCCACATGT AAAGGTGGGG TGTACGTCCA 25534 .......... .......... .......... .......... .......... .......... 566 CTCGTTAACT TCGAAAAATC ATGTATAAAT ATATATATAT TGAGAAACTG ATAAGGAAAA 25474 .......... .......... .......... .......... .......... .......... 566 AAAATATAAT AAAAAATGCA ACCTTAATGA ACATTGAACT GGTCTTGATT TGCTGATAGA 25414 .......... .......... .......... .......... .......... .......... 566 AATAAGAAAA TACCTCCTTG CAGACCTAGA TTTCAATCCT GATCAATAAG TCACTATCCT 25354 .......... .......... .......... .......... .......... .......... 566 ATTCAAATCT TGGCTTCGCC TATATTTTGT GTTAAATTTG AACACTAAGA GCCTGTTTGG 25294 .......... .......... .......... .......... .......... .......... 566 CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT TTAGTTGTTT 25234 .......... .......... .......... .......... .......... .......... 566 GGCAATACTC AAAATAACTT ACTTTAAGTT AAAAAAAACT TATTTTAAGC CAAAAGTTAA 25174 .......... .......... .......... .......... .......... .......... 566 AAACTGGGGT AGGGGTGTTT TTTTTTTTTA GCTTATAAGC TGTTTTAAGT TGACCACATT 25114 .......... .......... .......... .......... .......... .......... 566 TTTATCTTTT TGCCATTAAT ATTTTTATGC AATCTCCAAA TTACTCATAT AACTCTAACA 25054 .......... .......... .......... .......... .......... .......... 566 TCTCTTTCTT CCATTTTTCC CTTTTCACGT TTGATATAAC AACTTCAGCA CTTTTATCCA 24994 .......... .......... .......... .......... .......... .......... 566 AACGCATAAC TGCTTATTTT AAAAATAAAT TTCAACACTT CTAAAAGTAA TTTTTTAAAG 24934 .......... .......... .......... .......... .......... .......... 566 CTGCTTTTAT TAAGCCCATC CAAACGGATC CTAAGTCCGT ATTGTTGATT TAACCAAGAT 24874 .......... .......... .......... .......... .......... .......... 566 TGTGCCACCC TCTTAATACA ACCAAAGAGA GAAAAAAGAT AACCTGGTCG GCCCAAAAGT 24814 .......... .......... .......... .......... .......... .......... 566 GACCAGACCA GGTCAATCAT TATACATATA TTTTTGAAAT TTACTATTTT CTAAAAGTAC 24754 .......... .......... .......... .......... .......... .......... 566 AATATAATTA AAAAACGTAT ACAATTTATC AGTTGTTATT TTCTTAATTT GTCTAATTCT 24694 .......... .......... .......... .......... .......... .......... 566 CTTTAATTTG AAAGGGCAAC TTTCACATAT AGGAAATAAA ATATTTATAT TTGTATGCTA 24634 .......... .......... .......... .......... .......... .......... 566 TAGCAAATTT TGTATAATTG CGCTCCATAG CAAACATAAA ACTGTATAAT TCGCTATACA 24574 .......... .......... .......... .......... .......... .......... 566 TATACAAGTG TATAGTTCGC TGGCCTAAAT TGTATAATTC GCTGGCCTAT TTCGCTGCAA 24514 .......... .......... .......... .......... .......... .......... 566 TAGTATAATT CGTTATCCTA TTTCACTGCA ATTGTATAAT GCACGATTAT ATAATTAACT 24454 .......... .......... .......... .......... .......... .......... 566 GCCTATTTCG CTGCAATATT AAGTGTATAG CAAGAAGATA TATGTTTTTC TCTCGCTTTA 24394 .......... .......... .......... .......... .......... .......... 566 TACAAAAACA GAAACACAAT ATACACACTT CTGTTGTATA AAGCTAGAGA AAATTGTATT 24334 .......... .......... .......... .......... .......... .......... 566 TTACTGCAAT TGTATAATTC ACAATTGTAT AATTCTTTGA CCTTTTTCTC TGCAATATTT 24274 .......... .......... .......... .......... .......... .......... 566 GAAGTAAAAT GTTTGTAAAT TGTATAATTA AGTGTATAAC ACGAAGATAT AGATTTTTGC 24214 .......... .......... .......... .......... .......... .......... 566 ATGTGTATAT ACAATTTTCT CTCGCTTTAT ACAAAACAGA AACATAATTA TACACTTCTG 24154 .......... .......... .......... .......... .......... .......... 566 TGTATAAAGC GAGAGAGGCG AGCGAGAATG GAGAGTGGCG AGCGAGATTT CTGGGAGAGA 24094 .......... .......... .......... .......... .......... .......... 566 GGCGCTGGCA AATTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA ACCCTAACTA 24034 .......... .......... .......... .......... .......... .......... 566 TTCCATTTAT TTTAGGTTGT TAGTTTGCTA TTATATACAA TTTTCCCAAT TTGAAATCAA 23974 .......... .......... .......... .......... .......... .......... 566 TAATGTTTGA GTATTGATTC TATAAGAATA TCTTCAATTA TTTGGTATCT TCTTAGATAT 23914 .......... .......... .......... .......... .......... .......... 566 TTCAAGCTTA AACTAATTAA ATTTATCGAA TAATTAAATT TTAAAAGACG TAATCTTAAC 23854 .......... .......... .......... .......... .......... .......... 566 TTTAAATGTG ATCTAAAGTG TAACGATCAC TTCTTTCGAG TTTTTGGCCA AAATCATTTT 23794 .......... .......... .......... .......... .......... .......... 566 TAAACTATAC CTCAGACTCA AACTACATCC TTAAAGTATC ATTCTTACCA TGAAACATCC 23734 .......... .......... .......... .......... .......... .......... 566 TTAAAGTATT TTAAAGTTAA TAATTTTCAT CCTTCTACTT GAATTTATCA TAAAACTAAT 23674 .......... .......... .......... .......... .......... .......... 566 TGATATATCC TACAAAATTT AAGTTGTCCC TTCCTAATTA TTATTCTTAG ATATGCCAAG 23614 .......... .......... .......... .......... .......... .......... 566 AATATTATCC TGAACTTTTT CGTAATTGAC TTAAGAATTA TGTAAAATCT TTTAATTTGA 23554 .......... .......... .......... .......... .......... .......... 566 CCTTTTTTTT TTTTTTTCAT TTTTCATGTA ATTTTAATTA AAAAATATTA TTAGTTTAGA 23494 | || ||| || | ||||| ||| |||| .......... .......... .......... .TCCTACTTA AATATTATTA TTATTTTAC. 594 TATGTTTCTT CTTAATTGAA TATGCTAGAA ACGACATTTG TTGGAGACTT CCGCTTCTAA 23434 .......... .......... .......... .......... .......... .......... 594 TAATGTAGAA TGAAACTCAA ATACGATACA TAATCAATAT TTAGTCACTT TAATATTAGA 23374 .......... .......... .......... .......... .......... .......... 594 TTGACCCAAA AATCTATTAA TTTAATTGGT TAAGAAAAAG GTAAAATAAT TAATCTCCAA 23314 .......... .......... .......... .......... .......... .......... 594 CTTTTTTTCG TTACGAAAAA GGCAAATCAT ATACGCTCAC ACCTTCCAAT CATTTTTAGG 23254 .......... .......... .......... .......... .......... .......... 594 TTCCATAAGC AACTGTGTTT GAGATTTTTT TATGTTTTTC AAGAACTTCT TATAGAAAGT 23194 .......... .......... .......... .......... .......... .......... 594 AATGAAATTA TTTTGTTGAA AGTCACGTTA ACTGCTCATG TTTTCGTAAG ATCCATTAAT 23134 .......... .......... .......... .......... .......... .......... 594 GTTTGGACAT ATCTAACAAA AGGATGAAAG TTGTTTACTT ACAAATACTT AAAGGATGTA 23074 .......... .......... .......... .......... .......... .......... 594 TTTTGCTAAA AATGATACTT TACAGATGTA GTTTAAATTT GGGATATAGT TAAAGGATGT 23014 .......... .......... .......... .......... .......... .......... 594 TTTCTGTTAA AACTGATTCT TTAAAGATGT AGTATGAGTT TATAGTATAG TTGAAGGATG 22954 .......... .......... .......... .......... .......... .......... 594 TTTTAGAAAT ATTATACAAA ATAAAAAAAA TAATACTCTA TTTGGCATAT ACTCAATTAG 22894 .......... .......... .......... .......... .......... .......... 594 ACGAAATCGT AACCCTATTA TTAAATACTT CTACAATAAT TTTGATAAAT ATGTGCAATA 22834 .......... .......... .......... .......... .......... .......... 594 ACAGGGCTAA TTGAAAAAGT TTTTTAAAAA AACTATAATG CGTAAGAACT TATCTAAACA 22774 .......... .......... .......... .......... .......... .......... 594 CTTGTAATAT TTATGTGACA TACAATAATT TATATATATT TATTCATATC TTACGAAATA 22714 .......... .......... .......... .......... .......... .......... 594 TACAACAAAT ATTATATTGT CAAATGAAGA AGAAAAAATT AATTATCGAA TTACAATTAA 22654 .......... .......... .......... .......... .......... .......... 594 CTACTATGTA TTTTAAAAAG TTATGAAGAA AAATGTTATA AGGAACTAGA GGAGTATTCC 22594 .......... .......... .......... .......... .......... .......... 594 CCGTGTATAC AGCATAGTTT ATAGCTGAAA AAATATGGGA ATCAGAGCCA TTTCTTTGTT 22534 .......... .......... .......... .......... .......... .......... 594 ATTGGTGATT GATTGTAGAG GAAAAATCAA AATGGGTTAT TGCTTTAAAA CTAAAATGTA 22474 .......... .......... .......... .......... .......... .......... 594 AACTATGATC TCTTAATGTT ATAGTTATAG TAGATCCTCA TATTTTTCAA AAGTCAATTT 22414 .......... .......... .......... .......... .......... .......... 594 TTTCATATTT TTCAAAAGTC ATTTTTTTGT TTGGTTATAG TAGATTCTCA TATTTTTCAA 22354 .......... .......... .......... .......... .......... .......... 594 ATTTGATTGT AAAACTATCC TTGCTTACTT TAGATATTTT TGCATGAAAA TATGATTGAA 22294 .......... .......... .......... .......... .......... .......... 594 ATGGTTGAAT TTCAACTATT TTTATATTTA AAACTAAAAT GATTGCTTAG CGTTCAGTTA 22234 .......... .......... .......... .......... .......... .......... 594 CGGTAGATTT TCATATTTTT CAAAAGATAA TTCATATTTT TCAAAAGTCA TTTTTTGTTG 22174 .......... .......... .......... .......... .......... .......... 594 AAATTTCACT ATGCATTTGA TTATAAACTT TAGGTATTTT TGCATGAAAT ATGATTGAAT 22114 .......... .......... .......... .......... .......... .......... 594 TTCAACTACA AGTATAAGTA TATGTATTTG CAATAAATTT TAAAGCGTTG AAGAATAAAT 22054 .......... .......... .......... .......... .......... .......... 594 TAAGGACCAA TAAAATATAA AGAAATATAA TTTTATTGAT GAAATAAATG TAGATACAAA 21994 .......... .......... .......... .......... .......... .......... 594 TTTGTTAATC CCTTATTATT CTCTTTAACT TCCACAAATT ATTACAGGAA AAAT-GCACT 21935 || || |||| .......... .......... .......... .......... .......GAT TTATAACACT 607 CATCATAAAA AAGGATTT 21917 || | ||| || ||||| -ATTAGAAAC AAAGATTT 624 hqPGS_C04HBa0077O05.1-_SGN-E550484+ (27569 27003,23522 23495) ******************************************************************************** EST sequence 245 +strand 711 n (File: SGN-E396039+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AAAAACAAAG ATTTTCTCCA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AAATAAAAAA AATTTACTCA TTTTTTCTTG GAGCTAATTC AAAAAAAAAA A Predicted gene structure (within gDNA segment 28664 to 20960): Exon 1 27569 27003 ( 567 n); cDNA 2 566 ( 565 n); score: 0.871 Intron 1 27002 23523 (3480 n); Pd: 0.949 (s: 0.80), Pa: 0.000 (s: 0) Exon 2 23522 23495 ( 28 n); cDNA 567 594 ( 28 n); score: 0.750 Intron 2 23494 21947 (1548 n); Pd: 0.000 (s: 0), Pa: 0.649 (s: 0) Exon 3 21946 21917 ( 30 n); cDNA 595 624 ( 30 n); score: 0.617 PPA cDNA 661 672 MATCH C04HBa0077O05.1- SGN-E396039+ 0.871 625 0.879 C PGS_C04HBa0077O05.1-_SGN-E396039+ (27569 27003,23522 23495,21946 21917) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 417 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACA GGTCGTTACA ATAAATATTA GGTATAATAG ATAAATTTAT CATTTTACCT 26974 |||||||||| ||||||||| || || || CGACTAAACA GGTCGTTAC- ATTTATGTTC T......... .......... .......... 566 GATCTTATTT CACATGTATG TCATCTATTT TTAGGTGTGT ATAAATAGAT ATTTAAATTA 26914 .......... .......... .......... .......... .......... .......... 566 AATTTGTATA AAGTTGAAGT AGACACTGAA TTCTACGAGA CATAATACAA GTAAGAGATC 26854 .......... .......... .......... .......... .......... .......... 566 TAGGACGCAA ATTGTCATGT AAGATGACAC GCAAAAATGT GTGTATTTAT TTATTCAACG 26794 .......... .......... .......... .......... .......... .......... 566 AATTTATAGA AATATAAGTA TCTACTCGTG CACACTCAAA AATAAAGAAT ATAAATATAA 26734 .......... .......... .......... .......... .......... .......... 566 GTGATAAGAG CATATTTATA TATTATGTCT AACTATTAAT TTGATGTCCG TTGATCACAT 26674 .......... .......... .......... .......... .......... .......... 566 AAAAATTGAA CCAAATGAAT CATTTCCTAC TTATTCTTAA TATACTTAAA TTAGTTATCT 26614 .......... .......... .......... .......... .......... .......... 566 TCCATTATAA CATATACAAT TCATTCATTA TTCGTAACTA TCCTTTGTAA ATATAGGTGC 26554 .......... .......... .......... .......... .......... .......... 566 ATCGTATGTT TAATATATGG ATGAAATATT AATGAAGATG TATAAATTTT ATACGAGAGT 26494 .......... .......... .......... .......... .......... .......... 566 TATACCATTA AAATTAAAAT TTATAATGCT TGGTATAAAA TTATACCAAG AAAAATGTTT 26434 .......... .......... .......... .......... .......... .......... 566 TGCATGAATA TCATCTTAAA CAAAACAACA CACAAATATG CAATTCGAAT GTGCATAGAA 26374 .......... .......... .......... .......... .......... .......... 566 CCAAATATCC CATAAATTTA AGGTCAATGA GCTAGAGTTC ACCCAGGCAA GCAGCCTTAT 26314 .......... .......... .......... .......... .......... .......... 566 TTCCCCCCCC AAATTTAGGC CTTATTTTTT TTCTTTAAGA TTAACATGTC TGAATTTGAA 26254 .......... .......... .......... .......... .......... .......... 566 TAAACATTTG AATAATTTTG TGTCTAAGTT TAAACATTAA ATGATTAATA TTATTTATTT 26194 .......... .......... .......... .......... .......... .......... 566 TTTATCATCT GAATATGAGT AATTATTTAT AATTAAACAT TATAAATATA TAATTTAAAA 26134 .......... .......... .......... .......... .......... .......... 566 TAAGAAAGTA ATTAACCATC GTTTTTTTTT TTCTCAAAGC ATATTTAAAA AGAGGAGGTT 26074 .......... .......... .......... .......... .......... .......... 566 GTTCGATTTT GTAACTACAC AATTAAGAAT AAAACGGTAC TTGCCGATGA TAAAATATCT 26014 .......... .......... .......... .......... .......... .......... 566 ACTTTGAATG CTCTTCTTTC AAAAATTAGT GTGTATAATG AATTTTTTTT AAAAAAAAGA 25954 .......... .......... .......... .......... .......... .......... 566 TATATTTACA TTAGATATGA TGCAGTTAAA CAGTTATTGA AACATGAGGT TATTTTCTTA 25894 .......... .......... .......... .......... .......... .......... 566 GAATGTGTAA GGTCCTAAAA GTTATTTGTA ATCTTTTAAC TAAGGAATTT GACTTGAAAA 25834 .......... .......... .......... .......... .......... .......... 566 TGAATAAATG GTCTTTACCT CGAAGGAGAT GAAACGGGAT GGTGCTAAAG CCCATTGATT 25774 .......... .......... .......... .......... .......... .......... 566 GAGATAATAT GACACAAGGC CATATTTTTT GATGCAGATA GTAGGGGCGA TTCAACTCTA 25714 .......... .......... .......... .......... .......... .......... 566 AAGCCACTAA AGTAATGACT TTAGGCTTCC AAAATATAAC GCCTCAAATT TATTTAATGT 25654 .......... .......... .......... .......... .......... .......... 566 TACAGATATA CAAATATAAA TATACTTATA ATTATGTATC TATAATTAGT ATTAATTGAA 25594 .......... .......... .......... .......... .......... .......... 566 ATTTTCTTAA TAGTTTCTAA TCATGGGCGA ATCCACATGT AAAGGTGGGG TGTACGTCCA 25534 .......... .......... .......... .......... .......... .......... 566 CTCGTTAACT TCGAAAAATC ATGTATAAAT ATATATATAT TGAGAAACTG ATAAGGAAAA 25474 .......... .......... .......... .......... .......... .......... 566 AAAATATAAT AAAAAATGCA ACCTTAATGA ACATTGAACT GGTCTTGATT TGCTGATAGA 25414 .......... .......... .......... .......... .......... .......... 566 AATAAGAAAA TACCTCCTTG CAGACCTAGA TTTCAATCCT GATCAATAAG TCACTATCCT 25354 .......... .......... .......... .......... .......... .......... 566 ATTCAAATCT TGGCTTCGCC TATATTTTGT GTTAAATTTG AACACTAAGA GCCTGTTTGG 25294 .......... .......... .......... .......... .......... .......... 566 CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT TTAGTTGTTT 25234 .......... .......... .......... .......... .......... .......... 566 GGCAATACTC AAAATAACTT ACTTTAAGTT AAAAAAAACT TATTTTAAGC CAAAAGTTAA 25174 .......... .......... .......... .......... .......... .......... 566 AAACTGGGGT AGGGGTGTTT TTTTTTTTTA GCTTATAAGC TGTTTTAAGT TGACCACATT 25114 .......... .......... .......... .......... .......... .......... 566 TTTATCTTTT TGCCATTAAT ATTTTTATGC AATCTCCAAA TTACTCATAT AACTCTAACA 25054 .......... .......... .......... .......... .......... .......... 566 TCTCTTTCTT CCATTTTTCC CTTTTCACGT TTGATATAAC AACTTCAGCA CTTTTATCCA 24994 .......... .......... .......... .......... .......... .......... 566 AACGCATAAC TGCTTATTTT AAAAATAAAT TTCAACACTT CTAAAAGTAA TTTTTTAAAG 24934 .......... .......... .......... .......... .......... .......... 566 CTGCTTTTAT TAAGCCCATC CAAACGGATC CTAAGTCCGT ATTGTTGATT TAACCAAGAT 24874 .......... .......... .......... .......... .......... .......... 566 TGTGCCACCC TCTTAATACA ACCAAAGAGA GAAAAAAGAT AACCTGGTCG GCCCAAAAGT 24814 .......... .......... .......... .......... .......... .......... 566 GACCAGACCA GGTCAATCAT TATACATATA TTTTTGAAAT TTACTATTTT CTAAAAGTAC 24754 .......... .......... .......... .......... .......... .......... 566 AATATAATTA AAAAACGTAT ACAATTTATC AGTTGTTATT TTCTTAATTT GTCTAATTCT 24694 .......... .......... .......... .......... .......... .......... 566 CTTTAATTTG AAAGGGCAAC TTTCACATAT AGGAAATAAA ATATTTATAT TTGTATGCTA 24634 .......... .......... .......... .......... .......... .......... 566 TAGCAAATTT TGTATAATTG CGCTCCATAG CAAACATAAA ACTGTATAAT TCGCTATACA 24574 .......... .......... .......... .......... .......... .......... 566 TATACAAGTG TATAGTTCGC TGGCCTAAAT TGTATAATTC GCTGGCCTAT TTCGCTGCAA 24514 .......... .......... .......... .......... .......... .......... 566 TAGTATAATT CGTTATCCTA TTTCACTGCA ATTGTATAAT GCACGATTAT ATAATTAACT 24454 .......... .......... .......... .......... .......... .......... 566 GCCTATTTCG CTGCAATATT AAGTGTATAG CAAGAAGATA TATGTTTTTC TCTCGCTTTA 24394 .......... .......... .......... .......... .......... .......... 566 TACAAAAACA GAAACACAAT ATACACACTT CTGTTGTATA AAGCTAGAGA AAATTGTATT 24334 .......... .......... .......... .......... .......... .......... 566 TTACTGCAAT TGTATAATTC ACAATTGTAT AATTCTTTGA CCTTTTTCTC TGCAATATTT 24274 .......... .......... .......... .......... .......... .......... 566 GAAGTAAAAT GTTTGTAAAT TGTATAATTA AGTGTATAAC ACGAAGATAT AGATTTTTGC 24214 .......... .......... .......... .......... .......... .......... 566 ATGTGTATAT ACAATTTTCT CTCGCTTTAT ACAAAACAGA AACATAATTA TACACTTCTG 24154 .......... .......... .......... .......... .......... .......... 566 TGTATAAAGC GAGAGAGGCG AGCGAGAATG GAGAGTGGCG AGCGAGATTT CTGGGAGAGA 24094 .......... .......... .......... .......... .......... .......... 566 GGCGCTGGCA AATTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA ACCCTAACTA 24034 .......... .......... .......... .......... .......... .......... 566 TTCCATTTAT TTTAGGTTGT TAGTTTGCTA TTATATACAA TTTTCCCAAT TTGAAATCAA 23974 .......... .......... .......... .......... .......... .......... 566 TAATGTTTGA GTATTGATTC TATAAGAATA TCTTCAATTA TTTGGTATCT TCTTAGATAT 23914 .......... .......... .......... .......... .......... .......... 566 TTCAAGCTTA AACTAATTAA ATTTATCGAA TAATTAAATT TTAAAAGACG TAATCTTAAC 23854 .......... .......... .......... .......... .......... .......... 566 TTTAAATGTG ATCTAAAGTG TAACGATCAC TTCTTTCGAG TTTTTGGCCA AAATCATTTT 23794 .......... .......... .......... .......... .......... .......... 566 TAAACTATAC CTCAGACTCA AACTACATCC TTAAAGTATC ATTCTTACCA TGAAACATCC 23734 .......... .......... .......... .......... .......... .......... 566 TTAAAGTATT TTAAAGTTAA TAATTTTCAT CCTTCTACTT GAATTTATCA TAAAACTAAT 23674 .......... .......... .......... .......... .......... .......... 566 TGATATATCC TACAAAATTT AAGTTGTCCC TTCCTAATTA TTATTCTTAG ATATGCCAAG 23614 .......... .......... .......... .......... .......... .......... 566 AATATTATCC TGAACTTTTT CGTAATTGAC TTAAGAATTA TGTAAAATCT TTTAATTTGA 23554 .......... .......... .......... .......... .......... .......... 566 CCTTTTTTTT TTTTTTTCAT TTTTCATGTA ATTTTAATTA AAAAATATTA TTAGTTTAGA 23494 | || ||| || | ||||| ||| |||| .......... .......... .......... .TCCTACTTA AATATTATTA TTATTTTAC. 594 TATGTTTCTT CTTAATTGAA TATGCTAGAA ACGACATTTG TTGGAGACTT CCGCTTCTAA 23434 .......... .......... .......... .......... .......... .......... 594 TAATGTAGAA TGAAACTCAA ATACGATACA TAATCAATAT TTAGTCACTT TAATATTAGA 23374 .......... .......... .......... .......... .......... .......... 594 TTGACCCAAA AATCTATTAA TTTAATTGGT TAAGAAAAAG GTAAAATAAT TAATCTCCAA 23314 .......... .......... .......... .......... .......... .......... 594 CTTTTTTTCG TTACGAAAAA GGCAAATCAT ATACGCTCAC ACCTTCCAAT CATTTTTAGG 23254 .......... .......... .......... .......... .......... .......... 594 TTCCATAAGC AACTGTGTTT GAGATTTTTT TATGTTTTTC AAGAACTTCT TATAGAAAGT 23194 .......... .......... .......... .......... .......... .......... 594 AATGAAATTA TTTTGTTGAA AGTCACGTTA ACTGCTCATG TTTTCGTAAG ATCCATTAAT 23134 .......... .......... .......... .......... .......... .......... 594 GTTTGGACAT ATCTAACAAA AGGATGAAAG TTGTTTACTT ACAAATACTT AAAGGATGTA 23074 .......... .......... .......... .......... .......... .......... 594 TTTTGCTAAA AATGATACTT TACAGATGTA GTTTAAATTT GGGATATAGT TAAAGGATGT 23014 .......... .......... .......... .......... .......... .......... 594 TTTCTGTTAA AACTGATTCT TTAAAGATGT AGTATGAGTT TATAGTATAG TTGAAGGATG 22954 .......... .......... .......... .......... .......... .......... 594 TTTTAGAAAT ATTATACAAA ATAAAAAAAA TAATACTCTA TTTGGCATAT ACTCAATTAG 22894 .......... .......... .......... .......... .......... .......... 594 ACGAAATCGT AACCCTATTA TTAAATACTT CTACAATAAT TTTGATAAAT ATGTGCAATA 22834 .......... .......... .......... .......... .......... .......... 594 ACAGGGCTAA TTGAAAAAGT TTTTTAAAAA AACTATAATG CGTAAGAACT TATCTAAACA 22774 .......... .......... .......... .......... .......... .......... 594 CTTGTAATAT TTATGTGACA TACAATAATT TATATATATT TATTCATATC TTACGAAATA 22714 .......... .......... .......... .......... .......... .......... 594 TACAACAAAT ATTATATTGT CAAATGAAGA AGAAAAAATT AATTATCGAA TTACAATTAA 22654 .......... .......... .......... .......... .......... .......... 594 CTACTATGTA TTTTAAAAAG TTATGAAGAA AAATGTTATA AGGAACTAGA GGAGTATTCC 22594 .......... .......... .......... .......... .......... .......... 594 CCGTGTATAC AGCATAGTTT ATAGCTGAAA AAATATGGGA ATCAGAGCCA TTTCTTTGTT 22534 .......... .......... .......... .......... .......... .......... 594 ATTGGTGATT GATTGTAGAG GAAAAATCAA AATGGGTTAT TGCTTTAAAA CTAAAATGTA 22474 .......... .......... .......... .......... .......... .......... 594 AACTATGATC TCTTAATGTT ATAGTTATAG TAGATCCTCA TATTTTTCAA AAGTCAATTT 22414 .......... .......... .......... .......... .......... .......... 594 TTTCATATTT TTCAAAAGTC ATTTTTTTGT TTGGTTATAG TAGATTCTCA TATTTTTCAA 22354 .......... .......... .......... .......... .......... .......... 594 ATTTGATTGT AAAACTATCC TTGCTTACTT TAGATATTTT TGCATGAAAA TATGATTGAA 22294 .......... .......... .......... .......... .......... .......... 594 ATGGTTGAAT TTCAACTATT TTTATATTTA AAACTAAAAT GATTGCTTAG CGTTCAGTTA 22234 .......... .......... .......... .......... .......... .......... 594 CGGTAGATTT TCATATTTTT CAAAAGATAA TTCATATTTT TCAAAAGTCA TTTTTTGTTG 22174 .......... .......... .......... .......... .......... .......... 594 AAATTTCACT ATGCATTTGA TTATAAACTT TAGGTATTTT TGCATGAAAT ATGATTGAAT 22114 .......... .......... .......... .......... .......... .......... 594 TTCAACTACA AGTATAAGTA TATGTATTTG CAATAAATTT TAAAGCGTTG AAGAATAAAT 22054 .......... .......... .......... .......... .......... .......... 594 TAAGGACCAA TAAAATATAA AGAAATATAA TTTTATTGAT GAAATAAATG TAGATACAAA 21994 .......... .......... .......... .......... .......... .......... 594 TTTGTTAATC CCTTATTATT CTCTTTAACT TCCACAAATT ATTACAGGAA AAAT-GCACT 21935 || || |||| .......... .......... .......... .......... .......GAT TTATAACACT 607 CATCATAAAA AAGGATTT 21917 || | ||| || ||||| -ATTAAAAAC AAAGATTT 624 hqPGS_C04HBa0077O05.1-_SGN-E396039+ (27569 27003,23522 23495) ******************************************************************************** EST sequence 167 +strand 726 n (File: SGN-E550322+) 1 TCGCACCAGA TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC 61 CTCCTTCTTT TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT 121 AATTTACTCA AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA 181 CTAACTTTAT AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC 241 CGACCCAGAC TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT 301 GCAGGTCGTC GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA 361 CGCCCGTGAC GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC 421 CCAATTTCAG AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT 481 GACGGTCCGT CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT 541 CAAAACGACT AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT 601 TACGATTTAT AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT 661 ATGCCATAAA ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA 721 AAAAAC Predicted gene structure (within gDNA segment 28754 to 20900): Exon 1 27558 27003 ( 556 n); cDNA 22 575 ( 554 n); score: 0.879 Intron 1 27002 23523 (3480 n); Pd: 0.949 (s: 0.80), Pa: 0.000 (s: 0) Exon 2 23522 23495 ( 28 n); cDNA 576 603 ( 28 n); score: 0.750 Intron 2 23494 21947 (1548 n); Pd: 0.000 (s: 0), Pa: 0.649 (s: 0) Exon 3 21946 21917 ( 30 n); cDNA 604 633 ( 30 n); score: 0.617 PPA cDNA 708 725 MATCH C04HBa0077O05.1- SGN-E550322+ 0.879 614 0.846 C PGS_C04HBa0077O05.1-_SGN-E550322+ (27558 27003,23522 23495,21946 21917) Alignment (genomic DNA sequence = upper lines): TCTCTCTCTC TTTGTTCTTT CTATTTTCTT TATTCAAACC CTCTTTCTTT TACCCTAATT 27499 ||||||||| | |||||||| ||||||| ||||||||| ||| |||||| |||||||||| TCTCTCTCTT TCTGTTCTTT TCTTTTTCTT -ATTCAAACC CTCCTTCTTT TACCCTAATT 80 AGCATATAAT TAAGAATAAA AGATGGCAAT AATAACCCAC TAATTTACTC AAGGTTACCT 27439 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| AGCATATAAT TAAGAATAAA AGATGG-AAT AATAACCCAC TAATTTACTC AAGGTTACCT 139 CTTTTAACCC CCAAGTAATT AGACTTATTA ACATTAACCC ACTAACTTTA TAATTAAAAC 27379 |||||||||| ||| |||||| |||||||||| |||| ||||| |||||||||| |||||||| CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA TAATTAAAGT 199 AGGAATAGTC AAAAACTTCC TTTAAAACAT -TAAAGAAAT CCGACTCAGC CTGGGATTAC 27320 |||||||||| ||||| ||| ||||||| | ||||||||| ||||| ||| |||||||||| AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA CTGGGATTAC 259 GCAGCCTGTG ACGGCCTGTC ATGCCTGCGA CGGTCCGTCC TGCTGCTCCG TCACAGAGTT 27260 ||| |||||| | |||| ||| ||||||||| |||||||||| ||| | | || || || ||| GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGT-CG TCGCAAGGTT 318 CAGAGACTCA A-TTCCCTTA AAGAGTCTGT GACGGTCCGT CACGCCTGTG ACGGTCCGTC 27201 |||||||||| | |||| | |||||||||| |||||||||| |||||| ||| |||||||||| CAGAGACTCA ATTTCCACCA AAGAGTCTGT GACGGTCCGT CACGCCCGTG ACGGTCCGTC 378 CTGCCATTCC GTTACGAAGT TTAGAGAGTC GA-TTTCAGT ACCCATTTTT CAGAATTTCA 27142 ||||||||| |||||||||| | |||||||| || ||| ||| ||||| ||| ||||||||| GTGCCATTCC GTTACGAAGT TCAGAGAGTC GATTTTTAGT ACCCA-ATTT CAGAATTTCT 437 AAGTGTTTTG AAACGAGACC CCCTCGACGG TCCGTCGTGC CCATGACGGT CCGTCGTGGA 27082 |||||||||| |||||||| | ||||||||| ||| |||||| ||||||||| ||||||||| AAGTGTTTTG AAACGAGA-C TCCTCGACGG TCCATCGTGC TCATGACGGT CCGTCGTGGG 496 ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA TAACATCTCT TGCTCAAAAC GACTAAACAG 27023 ||||||||| ||| || | | |||||| ||| ||| |||| | |||||||| |||||||||| TTCCGTCGTC TCAACCTGTT TTTCCAAAAA TAAAATCTGC TACTCAAAAC GACTAAACAG 556 GTCGTTACAA TAAATATTAG GTATAATAGA TAAATTTATC ATTTTACCTG ATCTTATTTC 26963 |||||||| | | || || GTCGTTAC-A TTTATGTTCT .......... .......... .......... .......... 575 ACATGTATGT CATCTATTTT TAGGTGTGTA TAAATAGATA TTTAAATTAA ATTTGTATAA 26903 .......... .......... .......... .......... .......... .......... 575 AGTTGAAGTA GACACTGAAT TCTACGAGAC ATAATACAAG TAAGAGATCT AGGACGCAAA 26843 .......... .......... .......... .......... .......... .......... 575 TTGTCATGTA AGATGACACG CAAAAATGTG TGTATTTATT TATTCAACGA ATTTATAGAA 26783 .......... .......... .......... .......... .......... .......... 575 ATATAAGTAT CTACTCGTGC ACACTCAAAA ATAAAGAATA TAAATATAAG TGATAAGAGC 26723 .......... .......... .......... .......... .......... .......... 575 ATATTTATAT ATTATGTCTA ACTATTAATT TGATGTCCGT TGATCACATA AAAATTGAAC 26663 .......... .......... .......... .......... .......... .......... 575 CAAATGAATC ATTTCCTACT TATTCTTAAT ATACTTAAAT TAGTTATCTT CCATTATAAC 26603 .......... .......... .......... .......... .......... .......... 575 ATATACAATT CATTCATTAT TCGTAACTAT CCTTTGTAAA TATAGGTGCA TCGTATGTTT 26543 .......... .......... .......... .......... .......... .......... 575 AATATATGGA TGAAATATTA ATGAAGATGT ATAAATTTTA TACGAGAGTT ATACCATTAA 26483 .......... .......... .......... .......... .......... .......... 575 AATTAAAATT TATAATGCTT GGTATAAAAT TATACCAAGA AAAATGTTTT GCATGAATAT 26423 .......... .......... .......... .......... .......... .......... 575 CATCTTAAAC AAAACAACAC ACAAATATGC AATTCGAATG TGCATAGAAC CAAATATCCC 26363 .......... .......... .......... .......... .......... .......... 575 ATAAATTTAA GGTCAATGAG CTAGAGTTCA CCCAGGCAAG CAGCCTTATT TCCCCCCCCA 26303 .......... .......... .......... .......... .......... .......... 575 AATTTAGGCC TTATTTTTTT TCTTTAAGAT TAACATGTCT GAATTTGAAT AAACATTTGA 26243 .......... .......... .......... .......... .......... .......... 575 ATAATTTTGT GTCTAAGTTT AAACATTAAA TGATTAATAT TATTTATTTT TTATCATCTG 26183 .......... .......... .......... .......... .......... .......... 575 AATATGAGTA ATTATTTATA ATTAAACATT ATAAATATAT AATTTAAAAT AAGAAAGTAA 26123 .......... .......... .......... .......... .......... .......... 575 TTAACCATCG TTTTTTTTTT TCTCAAAGCA TATTTAAAAA GAGGAGGTTG TTCGATTTTG 26063 .......... .......... .......... .......... .......... .......... 575 TAACTACACA ATTAAGAATA AAACGGTACT TGCCGATGAT AAAATATCTA CTTTGAATGC 26003 .......... .......... .......... .......... .......... .......... 575 TCTTCTTTCA AAAATTAGTG TGTATAATGA ATTTTTTTTA AAAAAAAGAT ATATTTACAT 25943 .......... .......... .......... .......... .......... .......... 575 TAGATATGAT GCAGTTAAAC AGTTATTGAA ACATGAGGTT ATTTTCTTAG AATGTGTAAG 25883 .......... .......... .......... .......... .......... .......... 575 GTCCTAAAAG TTATTTGTAA TCTTTTAACT AAGGAATTTG ACTTGAAAAT GAATAAATGG 25823 .......... .......... .......... .......... .......... .......... 575 TCTTTACCTC GAAGGAGATG AAACGGGATG GTGCTAAAGC CCATTGATTG AGATAATATG 25763 .......... .......... .......... .......... .......... .......... 575 ACACAAGGCC ATATTTTTTG ATGCAGATAG TAGGGGCGAT TCAACTCTAA AGCCACTAAA 25703 .......... .......... .......... .......... .......... .......... 575 GTAATGACTT TAGGCTTCCA AAATATAACG CCTCAAATTT ATTTAATGTT ACAGATATAC 25643 .......... .......... .......... .......... .......... .......... 575 AAATATAAAT ATACTTATAA TTATGTATCT ATAATTAGTA TTAATTGAAA TTTTCTTAAT 25583 .......... .......... .......... .......... .......... .......... 575 AGTTTCTAAT CATGGGCGAA TCCACATGTA AAGGTGGGGT GTACGTCCAC TCGTTAACTT 25523 .......... .......... .......... .......... .......... .......... 575 CGAAAAATCA TGTATAAATA TATATATATT GAGAAACTGA TAAGGAAAAA AAATATAATA 25463 .......... .......... .......... .......... .......... .......... 575 AAAAATGCAA CCTTAATGAA CATTGAACTG GTCTTGATTT GCTGATAGAA ATAAGAAAAT 25403 .......... .......... .......... .......... .......... .......... 575 ACCTCCTTGC AGACCTAGAT TTCAATCCTG ATCAATAAGT CACTATCCTA TTCAAATCTT 25343 .......... .......... .......... .......... .......... .......... 575 GGCTTCGCCT ATATTTTGTG TTAAATTTGA ACACTAAGAG CCTGTTTGGC TCAGCTTAAA 25283 .......... .......... .......... .......... .......... .......... 575 AGCTGGTCAA ACTGACTTAA AAGCTGGTTT TTGACTTATT TAGTTGTTTG GCAATACTCA 25223 .......... .......... .......... .......... .......... .......... 575 AAATAACTTA CTTTAAGTTA AAAAAAACTT ATTTTAAGCC AAAAGTTAAA AACTGGGGTA 25163 .......... .......... .......... .......... .......... .......... 575 GGGGTGTTTT TTTTTTTTAG CTTATAAGCT GTTTTAAGTT GACCACATTT TTATCTTTTT 25103 .......... .......... .......... .......... .......... .......... 575 GCCATTAATA TTTTTATGCA ATCTCCAAAT TACTCATATA ACTCTAACAT CTCTTTCTTC 25043 .......... .......... .......... .......... .......... .......... 575 CATTTTTCCC TTTTCACGTT TGATATAACA ACTTCAGCAC TTTTATCCAA ACGCATAACT 24983 .......... .......... .......... .......... .......... .......... 575 GCTTATTTTA AAAATAAATT TCAACACTTC TAAAAGTAAT TTTTTAAAGC TGCTTTTATT 24923 .......... .......... .......... .......... .......... .......... 575 AAGCCCATCC AAACGGATCC TAAGTCCGTA TTGTTGATTT AACCAAGATT GTGCCACCCT 24863 .......... .......... .......... .......... .......... .......... 575 CTTAATACAA CCAAAGAGAG AAAAAAGATA ACCTGGTCGG CCCAAAAGTG ACCAGACCAG 24803 .......... .......... .......... .......... .......... .......... 575 GTCAATCATT ATACATATAT TTTTGAAATT TACTATTTTC TAAAAGTACA ATATAATTAA 24743 .......... .......... .......... .......... .......... .......... 575 AAAACGTATA CAATTTATCA GTTGTTATTT TCTTAATTTG TCTAATTCTC TTTAATTTGA 24683 .......... .......... .......... .......... .......... .......... 575 AAGGGCAACT TTCACATATA GGAAATAAAA TATTTATATT TGTATGCTAT AGCAAATTTT 24623 .......... .......... .......... .......... .......... .......... 575 GTATAATTGC GCTCCATAGC AAACATAAAA CTGTATAATT CGCTATACAT ATACAAGTGT 24563 .......... .......... .......... .......... .......... .......... 575 ATAGTTCGCT GGCCTAAATT GTATAATTCG CTGGCCTATT TCGCTGCAAT AGTATAATTC 24503 .......... .......... .......... .......... .......... .......... 575 GTTATCCTAT TTCACTGCAA TTGTATAATG CACGATTATA TAATTAACTG CCTATTTCGC 24443 .......... .......... .......... .......... .......... .......... 575 TGCAATATTA AGTGTATAGC AAGAAGATAT ATGTTTTTCT CTCGCTTTAT ACAAAAACAG 24383 .......... .......... .......... .......... .......... .......... 575 AAACACAATA TACACACTTC TGTTGTATAA AGCTAGAGAA AATTGTATTT TACTGCAATT 24323 .......... .......... .......... .......... .......... .......... 575 GTATAATTCA CAATTGTATA ATTCTTTGAC CTTTTTCTCT GCAATATTTG AAGTAAAATG 24263 .......... .......... .......... .......... .......... .......... 575 TTTGTAAATT GTATAATTAA GTGTATAACA CGAAGATATA GATTTTTGCA TGTGTATATA 24203 .......... .......... .......... .......... .......... .......... 575 CAATTTTCTC TCGCTTTATA CAAAACAGAA ACATAATTAT ACACTTCTGT GTATAAAGCG 24143 .......... .......... .......... .......... .......... .......... 575 AGAGAGGCGA GCGAGAATGG AGAGTGGCGA GCGAGATTTC TGGGAGAGAG GCGCTGGCAA 24083 .......... .......... .......... .......... .......... .......... 575 ATTTTAGCTA ACGTTTGCTA TGGAGCACAA TTAAATCAAA CCCTAACTAT TCCATTTATT 24023 .......... .......... .......... .......... .......... .......... 575 TTAGGTTGTT AGTTTGCTAT TATATACAAT TTTCCCAATT TGAAATCAAT AATGTTTGAG 23963 .......... .......... .......... .......... .......... .......... 575 TATTGATTCT ATAAGAATAT CTTCAATTAT TTGGTATCTT CTTAGATATT TCAAGCTTAA 23903 .......... .......... .......... .......... .......... .......... 575 ACTAATTAAA TTTATCGAAT AATTAAATTT TAAAAGACGT AATCTTAACT TTAAATGTGA 23843 .......... .......... .......... .......... .......... .......... 575 TCTAAAGTGT AACGATCACT TCTTTCGAGT TTTTGGCCAA AATCATTTTT AAACTATACC 23783 .......... .......... .......... .......... .......... .......... 575 TCAGACTCAA ACTACATCCT TAAAGTATCA TTCTTACCAT GAAACATCCT TAAAGTATTT 23723 .......... .......... .......... .......... .......... .......... 575 TAAAGTTAAT AATTTTCATC CTTCTACTTG AATTTATCAT AAAACTAATT GATATATCCT 23663 .......... .......... .......... .......... .......... .......... 575 ACAAAATTTA AGTTGTCCCT TCCTAATTAT TATTCTTAGA TATGCCAAGA ATATTATCCT 23603 .......... .......... .......... .......... .......... .......... 575 GAACTTTTTC GTAATTGACT TAAGAATTAT GTAAAATCTT TTAATTTGAC CTTTTTTTTT 23543 .......... .......... .......... .......... .......... .......... 575 TTTTTTCATT TTTCATGTAA TTTTAATTAA AAAATATTAT TAGTTTAGAT ATGTTTCTTC 23483 | || |||| | | |||||| || |||| .......... .......... TCCTACTTAA ATATTATTAT TATTTTAC.. .......... 603 TTAATTGAAT ATGCTAGAAA CGACATTTGT TGGAGACTTC CGCTTCTAAT AATGTAGAAT 23423 .......... .......... .......... .......... .......... .......... 603 GAAACTCAAA TACGATACAT AATCAATATT TAGTCACTTT AATATTAGAT TGACCCAAAA 23363 .......... .......... .......... .......... .......... .......... 603 ATCTATTAAT TTAATTGGTT AAGAAAAAGG TAAAATAATT AATCTCCAAC TTTTTTTCGT 23303 .......... .......... .......... .......... .......... .......... 603 TACGAAAAAG GCAAATCATA TACGCTCACA CCTTCCAATC ATTTTTAGGT TCCATAAGCA 23243 .......... .......... .......... .......... .......... .......... 603 ACTGTGTTTG AGATTTTTTT ATGTTTTTCA AGAACTTCTT ATAGAAAGTA ATGAAATTAT 23183 .......... .......... .......... .......... .......... .......... 603 TTTGTTGAAA GTCACGTTAA CTGCTCATGT TTTCGTAAGA TCCATTAATG TTTGGACATA 23123 .......... .......... .......... .......... .......... .......... 603 TCTAACAAAA GGATGAAAGT TGTTTACTTA CAAATACTTA AAGGATGTAT TTTGCTAAAA 23063 .......... .......... .......... .......... .......... .......... 603 ATGATACTTT ACAGATGTAG TTTAAATTTG GGATATAGTT AAAGGATGTT TTCTGTTAAA 23003 .......... .......... .......... .......... .......... .......... 603 ACTGATTCTT TAAAGATGTA GTATGAGTTT ATAGTATAGT TGAAGGATGT TTTAGAAATA 22943 .......... .......... .......... .......... .......... .......... 603 TTATACAAAA TAAAAAAAAT AATACTCTAT TTGGCATATA CTCAATTAGA CGAAATCGTA 22883 .......... .......... .......... .......... .......... .......... 603 ACCCTATTAT TAAATACTTC TACAATAATT TTGATAAATA TGTGCAATAA CAGGGCTAAT 22823 .......... .......... .......... .......... .......... .......... 603 TGAAAAAGTT TTTTAAAAAA ACTATAATGC GTAAGAACTT ATCTAAACAC TTGTAATATT 22763 .......... .......... .......... .......... .......... .......... 603 TATGTGACAT ACAATAATTT ATATATATTT ATTCATATCT TACGAAATAT ACAACAAATA 22703 .......... .......... .......... .......... .......... .......... 603 TTATATTGTC AAATGAAGAA GAAAAAATTA ATTATCGAAT TACAATTAAC TACTATGTAT 22643 .......... .......... .......... .......... .......... .......... 603 TTTAAAAAGT TATGAAGAAA AATGTTATAA GGAACTAGAG GAGTATTCCC CGTGTATACA 22583 .......... .......... .......... .......... .......... .......... 603 GCATAGTTTA TAGCTGAAAA AATATGGGAA TCAGAGCCAT TTCTTTGTTA TTGGTGATTG 22523 .......... .......... .......... .......... .......... .......... 603 ATTGTAGAGG AAAAATCAAA ATGGGTTATT GCTTTAAAAC TAAAATGTAA ACTATGATCT 22463 .......... .......... .......... .......... .......... .......... 603 CTTAATGTTA TAGTTATAGT AGATCCTCAT ATTTTTCAAA AGTCAATTTT TTCATATTTT 22403 .......... .......... .......... .......... .......... .......... 603 TCAAAAGTCA TTTTTTTGTT TGGTTATAGT AGATTCTCAT ATTTTTCAAA TTTGATTGTA 22343 .......... .......... .......... .......... .......... .......... 603 AAACTATCCT TGCTTACTTT AGATATTTTT GCATGAAAAT ATGATTGAAA TGGTTGAATT 22283 .......... .......... .......... .......... .......... .......... 603 TCAACTATTT TTATATTTAA AACTAAAATG ATTGCTTAGC GTTCAGTTAC GGTAGATTTT 22223 .......... .......... .......... .......... .......... .......... 603 CATATTTTTC AAAAGATAAT TCATATTTTT CAAAAGTCAT TTTTTGTTGA AATTTCACTA 22163 .......... .......... .......... .......... .......... .......... 603 TGCATTTGAT TATAAACTTT AGGTATTTTT GCATGAAATA TGATTGAATT TCAACTACAA 22103 .......... .......... .......... .......... .......... .......... 603 GTATAAGTAT ATGTATTTGC AATAAATTTT AAAGCGTTGA AGAATAAATT AAGGACCAAT 22043 .......... .......... .......... .......... .......... .......... 603 AAAATATAAA GAAATATAAT TTTATTGATG AAATAAATGT AGATACAAAT TTGTTAATCC 21983 .......... .......... .......... .......... .......... .......... 603 CTTATTATTC TCTTTAACTT CCACAAATTA TTACAGGAAA AAT-GCACTC ATCATAAAAA 21924 || || |||| || | ||| | .......... .......... .......... ......GATT TATAACACT- ATTAGAAACA 626 AGGATTT 21917 | ||||| AAGATTT 633 hqPGS_C04HBa0077O05.1-_SGN-E550322+ (27558 27003,23522 23495) ******************************************************************************** EST sequence 165 +strand 710 n (File: SGN-E550065+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATGA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTGATTCAT AAGAAAAAAA Predicted gene structure (within gDNA segment 28664 to 22770): Exon 1 27569 27014 ( 556 n); cDNA 2 556 ( 555 n); score: 0.879 Intron 1 27013 23657 (3357 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 23656 23625 ( 32 n); cDNA 557 588 ( 32 n); score: 0.781 MATCH C04HBa0077O05.1- SGN-E550065+ 0.879 588 0.828 C PGS_C04HBa0077O05.1-_SGN-E550065+ (27569 27014,23656 23625) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 417 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACA GGTCGTTACA ATAAATATTA GGTATAATAG ATAAATTTAT CATTTTACCT 26974 |||||||||| |||||||||| CGACTAAACA GGTCGTTACA .......... .......... .......... .......... 556 GATCTTATTT CACATGTATG TCATCTATTT TTAGGTGTGT ATAAATAGAT ATTTAAATTA 26914 .......... .......... .......... .......... .......... .......... 556 AATTTGTATA AAGTTGAAGT AGACACTGAA TTCTACGAGA CATAATACAA GTAAGAGATC 26854 .......... .......... .......... .......... .......... .......... 556 TAGGACGCAA ATTGTCATGT AAGATGACAC GCAAAAATGT GTGTATTTAT TTATTCAACG 26794 .......... .......... .......... .......... .......... .......... 556 AATTTATAGA AATATAAGTA TCTACTCGTG CACACTCAAA AATAAAGAAT ATAAATATAA 26734 .......... .......... .......... .......... .......... .......... 556 GTGATAAGAG CATATTTATA TATTATGTCT AACTATTAAT TTGATGTCCG TTGATCACAT 26674 .......... .......... .......... .......... .......... .......... 556 AAAAATTGAA CCAAATGAAT CATTTCCTAC TTATTCTTAA TATACTTAAA TTAGTTATCT 26614 .......... .......... .......... .......... .......... .......... 556 TCCATTATAA CATATACAAT TCATTCATTA TTCGTAACTA TCCTTTGTAA ATATAGGTGC 26554 .......... .......... .......... .......... .......... .......... 556 ATCGTATGTT TAATATATGG ATGAAATATT AATGAAGATG TATAAATTTT ATACGAGAGT 26494 .......... .......... .......... .......... .......... .......... 556 TATACCATTA AAATTAAAAT TTATAATGCT TGGTATAAAA TTATACCAAG AAAAATGTTT 26434 .......... .......... .......... .......... .......... .......... 556 TGCATGAATA TCATCTTAAA CAAAACAACA CACAAATATG CAATTCGAAT GTGCATAGAA 26374 .......... .......... .......... .......... .......... .......... 556 CCAAATATCC CATAAATTTA AGGTCAATGA GCTAGAGTTC ACCCAGGCAA GCAGCCTTAT 26314 .......... .......... .......... .......... .......... .......... 556 TTCCCCCCCC AAATTTAGGC CTTATTTTTT TTCTTTAAGA TTAACATGTC TGAATTTGAA 26254 .......... .......... .......... .......... .......... .......... 556 TAAACATTTG AATAATTTTG TGTCTAAGTT TAAACATTAA ATGATTAATA TTATTTATTT 26194 .......... .......... .......... .......... .......... .......... 556 TTTATCATCT GAATATGAGT AATTATTTAT AATTAAACAT TATAAATATA TAATTTAAAA 26134 .......... .......... .......... .......... .......... .......... 556 TAAGAAAGTA ATTAACCATC GTTTTTTTTT TTCTCAAAGC ATATTTAAAA AGAGGAGGTT 26074 .......... .......... .......... .......... .......... .......... 556 GTTCGATTTT GTAACTACAC AATTAAGAAT AAAACGGTAC TTGCCGATGA TAAAATATCT 26014 .......... .......... .......... .......... .......... .......... 556 ACTTTGAATG CTCTTCTTTC AAAAATTAGT GTGTATAATG AATTTTTTTT AAAAAAAAGA 25954 .......... .......... .......... .......... .......... .......... 556 TATATTTACA TTAGATATGA TGCAGTTAAA CAGTTATTGA AACATGAGGT TATTTTCTTA 25894 .......... .......... .......... .......... .......... .......... 556 GAATGTGTAA GGTCCTAAAA GTTATTTGTA ATCTTTTAAC TAAGGAATTT GACTTGAAAA 25834 .......... .......... .......... .......... .......... .......... 556 TGAATAAATG GTCTTTACCT CGAAGGAGAT GAAACGGGAT GGTGCTAAAG CCCATTGATT 25774 .......... .......... .......... .......... .......... .......... 556 GAGATAATAT GACACAAGGC CATATTTTTT GATGCAGATA GTAGGGGCGA TTCAACTCTA 25714 .......... .......... .......... .......... .......... .......... 556 AAGCCACTAA AGTAATGACT TTAGGCTTCC AAAATATAAC GCCTCAAATT TATTTAATGT 25654 .......... .......... .......... .......... .......... .......... 556 TACAGATATA CAAATATAAA TATACTTATA ATTATGTATC TATAATTAGT ATTAATTGAA 25594 .......... .......... .......... .......... .......... .......... 556 ATTTTCTTAA TAGTTTCTAA TCATGGGCGA ATCCACATGT AAAGGTGGGG TGTACGTCCA 25534 .......... .......... .......... .......... .......... .......... 556 CTCGTTAACT TCGAAAAATC ATGTATAAAT ATATATATAT TGAGAAACTG ATAAGGAAAA 25474 .......... .......... .......... .......... .......... .......... 556 AAAATATAAT AAAAAATGCA ACCTTAATGA ACATTGAACT GGTCTTGATT TGCTGATAGA 25414 .......... .......... .......... .......... .......... .......... 556 AATAAGAAAA TACCTCCTTG CAGACCTAGA TTTCAATCCT GATCAATAAG TCACTATCCT 25354 .......... .......... .......... .......... .......... .......... 556 ATTCAAATCT TGGCTTCGCC TATATTTTGT GTTAAATTTG AACACTAAGA GCCTGTTTGG 25294 .......... .......... .......... .......... .......... .......... 556 CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT TTAGTTGTTT 25234 .......... .......... .......... .......... .......... .......... 556 GGCAATACTC AAAATAACTT ACTTTAAGTT AAAAAAAACT TATTTTAAGC CAAAAGTTAA 25174 .......... .......... .......... .......... .......... .......... 556 AAACTGGGGT AGGGGTGTTT TTTTTTTTTA GCTTATAAGC TGTTTTAAGT TGACCACATT 25114 .......... .......... .......... .......... .......... .......... 556 TTTATCTTTT TGCCATTAAT ATTTTTATGC AATCTCCAAA TTACTCATAT AACTCTAACA 25054 .......... .......... .......... .......... .......... .......... 556 TCTCTTTCTT CCATTTTTCC CTTTTCACGT TTGATATAAC AACTTCAGCA CTTTTATCCA 24994 .......... .......... .......... .......... .......... .......... 556 AACGCATAAC TGCTTATTTT AAAAATAAAT TTCAACACTT CTAAAAGTAA TTTTTTAAAG 24934 .......... .......... .......... .......... .......... .......... 556 CTGCTTTTAT TAAGCCCATC CAAACGGATC CTAAGTCCGT ATTGTTGATT TAACCAAGAT 24874 .......... .......... .......... .......... .......... .......... 556 TGTGCCACCC TCTTAATACA ACCAAAGAGA GAAAAAAGAT AACCTGGTCG GCCCAAAAGT 24814 .......... .......... .......... .......... .......... .......... 556 GACCAGACCA GGTCAATCAT TATACATATA TTTTTGAAAT TTACTATTTT CTAAAAGTAC 24754 .......... .......... .......... .......... .......... .......... 556 AATATAATTA AAAAACGTAT ACAATTTATC AGTTGTTATT TTCTTAATTT GTCTAATTCT 24694 .......... .......... .......... .......... .......... .......... 556 CTTTAATTTG AAAGGGCAAC TTTCACATAT AGGAAATAAA ATATTTATAT TTGTATGCTA 24634 .......... .......... .......... .......... .......... .......... 556 TAGCAAATTT TGTATAATTG CGCTCCATAG CAAACATAAA ACTGTATAAT TCGCTATACA 24574 .......... .......... .......... .......... .......... .......... 556 TATACAAGTG TATAGTTCGC TGGCCTAAAT TGTATAATTC GCTGGCCTAT TTCGCTGCAA 24514 .......... .......... .......... .......... .......... .......... 556 TAGTATAATT CGTTATCCTA TTTCACTGCA ATTGTATAAT GCACGATTAT ATAATTAACT 24454 .......... .......... .......... .......... .......... .......... 556 GCCTATTTCG CTGCAATATT AAGTGTATAG CAAGAAGATA TATGTTTTTC TCTCGCTTTA 24394 .......... .......... .......... .......... .......... .......... 556 TACAAAAACA GAAACACAAT ATACACACTT CTGTTGTATA AAGCTAGAGA AAATTGTATT 24334 .......... .......... .......... .......... .......... .......... 556 TTACTGCAAT TGTATAATTC ACAATTGTAT AATTCTTTGA CCTTTTTCTC TGCAATATTT 24274 .......... .......... .......... .......... .......... .......... 556 GAAGTAAAAT GTTTGTAAAT TGTATAATTA AGTGTATAAC ACGAAGATAT AGATTTTTGC 24214 .......... .......... .......... .......... .......... .......... 556 ATGTGTATAT ACAATTTTCT CTCGCTTTAT ACAAAACAGA AACATAATTA TACACTTCTG 24154 .......... .......... .......... .......... .......... .......... 556 TGTATAAAGC GAGAGAGGCG AGCGAGAATG GAGAGTGGCG AGCGAGATTT CTGGGAGAGA 24094 .......... .......... .......... .......... .......... .......... 556 GGCGCTGGCA AATTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA ACCCTAACTA 24034 .......... .......... .......... .......... .......... .......... 556 TTCCATTTAT TTTAGGTTGT TAGTTTGCTA TTATATACAA TTTTCCCAAT TTGAAATCAA 23974 .......... .......... .......... .......... .......... .......... 556 TAATGTTTGA GTATTGATTC TATAAGAATA TCTTCAATTA TTTGGTATCT TCTTAGATAT 23914 .......... .......... .......... .......... .......... .......... 556 TTCAAGCTTA AACTAATTAA ATTTATCGAA TAATTAAATT TTAAAAGACG TAATCTTAAC 23854 .......... .......... .......... .......... .......... .......... 556 TTTAAATGTG ATCTAAAGTG TAACGATCAC TTCTTTCGAG TTTTTGGCCA AAATCATTTT 23794 .......... .......... .......... .......... .......... .......... 556 TAAACTATAC CTCAGACTCA AACTACATCC TTAAAGTATC ATTCTTACCA TGAAACATCC 23734 .......... .......... .......... .......... .......... .......... 556 TTAAAGTATT TTAAAGTTAA TAATTTTCAT CCTTCTACTT GAATTTATCA TAAAACTAAT 23674 .......... .......... .......... .......... .......... .......... 556 TGATATATCC TACAAAATTT AAGTTGTCCC TTCCTAATTA TTATTCTTA 23625 ||| | ||| | || | | ||| || ||||| ||| .......... .......TTT ATGTTCTTCC TACTTAAATA TTATTATTA 588 hqPGS_C04HBa0077O05.1-_SGN-E550065+ (27569 27014,23656 23625) ******************************************************************************** EST sequence 171 +strand 709 n (File: SGN-E550207+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTNCA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAA Predicted gene structure (within gDNA segment 28664 to 22780): Exon 1 27569 27014 ( 556 n); cDNA 2 556 ( 555 n); score: 0.879 Intron 1 27013 23657 (3357 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 23656 23625 ( 32 n); cDNA 557 588 ( 32 n); score: 0.781 PPA cDNA 699 709 MATCH C04HBa0077O05.1- SGN-E550207+ 0.879 588 0.829 C PGS_C04HBa0077O05.1-_SGN-E550207+ (27569 27014,23656 23625) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 417 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACA GGTCGTTACA ATAAATATTA GGTATAATAG ATAAATTTAT CATTTTACCT 26974 |||||||||| |||||||||| CGACTAAACA GGTCGTTACA .......... .......... .......... .......... 556 GATCTTATTT CACATGTATG TCATCTATTT TTAGGTGTGT ATAAATAGAT ATTTAAATTA 26914 .......... .......... .......... .......... .......... .......... 556 AATTTGTATA AAGTTGAAGT AGACACTGAA TTCTACGAGA CATAATACAA GTAAGAGATC 26854 .......... .......... .......... .......... .......... .......... 556 TAGGACGCAA ATTGTCATGT AAGATGACAC GCAAAAATGT GTGTATTTAT TTATTCAACG 26794 .......... .......... .......... .......... .......... .......... 556 AATTTATAGA AATATAAGTA TCTACTCGTG CACACTCAAA AATAAAGAAT ATAAATATAA 26734 .......... .......... .......... .......... .......... .......... 556 GTGATAAGAG CATATTTATA TATTATGTCT AACTATTAAT TTGATGTCCG TTGATCACAT 26674 .......... .......... .......... .......... .......... .......... 556 AAAAATTGAA CCAAATGAAT CATTTCCTAC TTATTCTTAA TATACTTAAA TTAGTTATCT 26614 .......... .......... .......... .......... .......... .......... 556 TCCATTATAA CATATACAAT TCATTCATTA TTCGTAACTA TCCTTTGTAA ATATAGGTGC 26554 .......... .......... .......... .......... .......... .......... 556 ATCGTATGTT TAATATATGG ATGAAATATT AATGAAGATG TATAAATTTT ATACGAGAGT 26494 .......... .......... .......... .......... .......... .......... 556 TATACCATTA AAATTAAAAT TTATAATGCT TGGTATAAAA TTATACCAAG AAAAATGTTT 26434 .......... .......... .......... .......... .......... .......... 556 TGCATGAATA TCATCTTAAA CAAAACAACA CACAAATATG CAATTCGAAT GTGCATAGAA 26374 .......... .......... .......... .......... .......... .......... 556 CCAAATATCC CATAAATTTA AGGTCAATGA GCTAGAGTTC ACCCAGGCAA GCAGCCTTAT 26314 .......... .......... .......... .......... .......... .......... 556 TTCCCCCCCC AAATTTAGGC CTTATTTTTT TTCTTTAAGA TTAACATGTC TGAATTTGAA 26254 .......... .......... .......... .......... .......... .......... 556 TAAACATTTG AATAATTTTG TGTCTAAGTT TAAACATTAA ATGATTAATA TTATTTATTT 26194 .......... .......... .......... .......... .......... .......... 556 TTTATCATCT GAATATGAGT AATTATTTAT AATTAAACAT TATAAATATA TAATTTAAAA 26134 .......... .......... .......... .......... .......... .......... 556 TAAGAAAGTA ATTAACCATC GTTTTTTTTT TTCTCAAAGC ATATTTAAAA AGAGGAGGTT 26074 .......... .......... .......... .......... .......... .......... 556 GTTCGATTTT GTAACTACAC AATTAAGAAT AAAACGGTAC TTGCCGATGA TAAAATATCT 26014 .......... .......... .......... .......... .......... .......... 556 ACTTTGAATG CTCTTCTTTC AAAAATTAGT GTGTATAATG AATTTTTTTT AAAAAAAAGA 25954 .......... .......... .......... .......... .......... .......... 556 TATATTTACA TTAGATATGA TGCAGTTAAA CAGTTATTGA AACATGAGGT TATTTTCTTA 25894 .......... .......... .......... .......... .......... .......... 556 GAATGTGTAA GGTCCTAAAA GTTATTTGTA ATCTTTTAAC TAAGGAATTT GACTTGAAAA 25834 .......... .......... .......... .......... .......... .......... 556 TGAATAAATG GTCTTTACCT CGAAGGAGAT GAAACGGGAT GGTGCTAAAG CCCATTGATT 25774 .......... .......... .......... .......... .......... .......... 556 GAGATAATAT GACACAAGGC CATATTTTTT GATGCAGATA GTAGGGGCGA TTCAACTCTA 25714 .......... .......... .......... .......... .......... .......... 556 AAGCCACTAA AGTAATGACT TTAGGCTTCC AAAATATAAC GCCTCAAATT TATTTAATGT 25654 .......... .......... .......... .......... .......... .......... 556 TACAGATATA CAAATATAAA TATACTTATA ATTATGTATC TATAATTAGT ATTAATTGAA 25594 .......... .......... .......... .......... .......... .......... 556 ATTTTCTTAA TAGTTTCTAA TCATGGGCGA ATCCACATGT AAAGGTGGGG TGTACGTCCA 25534 .......... .......... .......... .......... .......... .......... 556 CTCGTTAACT TCGAAAAATC ATGTATAAAT ATATATATAT TGAGAAACTG ATAAGGAAAA 25474 .......... .......... .......... .......... .......... .......... 556 AAAATATAAT AAAAAATGCA ACCTTAATGA ACATTGAACT GGTCTTGATT TGCTGATAGA 25414 .......... .......... .......... .......... .......... .......... 556 AATAAGAAAA TACCTCCTTG CAGACCTAGA TTTCAATCCT GATCAATAAG TCACTATCCT 25354 .......... .......... .......... .......... .......... .......... 556 ATTCAAATCT TGGCTTCGCC TATATTTTGT GTTAAATTTG AACACTAAGA GCCTGTTTGG 25294 .......... .......... .......... .......... .......... .......... 556 CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT TTAGTTGTTT 25234 .......... .......... .......... .......... .......... .......... 556 GGCAATACTC AAAATAACTT ACTTTAAGTT AAAAAAAACT TATTTTAAGC CAAAAGTTAA 25174 .......... .......... .......... .......... .......... .......... 556 AAACTGGGGT AGGGGTGTTT TTTTTTTTTA GCTTATAAGC TGTTTTAAGT TGACCACATT 25114 .......... .......... .......... .......... .......... .......... 556 TTTATCTTTT TGCCATTAAT ATTTTTATGC AATCTCCAAA TTACTCATAT AACTCTAACA 25054 .......... .......... .......... .......... .......... .......... 556 TCTCTTTCTT CCATTTTTCC CTTTTCACGT TTGATATAAC AACTTCAGCA CTTTTATCCA 24994 .......... .......... .......... .......... .......... .......... 556 AACGCATAAC TGCTTATTTT AAAAATAAAT TTCAACACTT CTAAAAGTAA TTTTTTAAAG 24934 .......... .......... .......... .......... .......... .......... 556 CTGCTTTTAT TAAGCCCATC CAAACGGATC CTAAGTCCGT ATTGTTGATT TAACCAAGAT 24874 .......... .......... .......... .......... .......... .......... 556 TGTGCCACCC TCTTAATACA ACCAAAGAGA GAAAAAAGAT AACCTGGTCG GCCCAAAAGT 24814 .......... .......... .......... .......... .......... .......... 556 GACCAGACCA GGTCAATCAT TATACATATA TTTTTGAAAT TTACTATTTT CTAAAAGTAC 24754 .......... .......... .......... .......... .......... .......... 556 AATATAATTA AAAAACGTAT ACAATTTATC AGTTGTTATT TTCTTAATTT GTCTAATTCT 24694 .......... .......... .......... .......... .......... .......... 556 CTTTAATTTG AAAGGGCAAC TTTCACATAT AGGAAATAAA ATATTTATAT TTGTATGCTA 24634 .......... .......... .......... .......... .......... .......... 556 TAGCAAATTT TGTATAATTG CGCTCCATAG CAAACATAAA ACTGTATAAT TCGCTATACA 24574 .......... .......... .......... .......... .......... .......... 556 TATACAAGTG TATAGTTCGC TGGCCTAAAT TGTATAATTC GCTGGCCTAT TTCGCTGCAA 24514 .......... .......... .......... .......... .......... .......... 556 TAGTATAATT CGTTATCCTA TTTCACTGCA ATTGTATAAT GCACGATTAT ATAATTAACT 24454 .......... .......... .......... .......... .......... .......... 556 GCCTATTTCG CTGCAATATT AAGTGTATAG CAAGAAGATA TATGTTTTTC TCTCGCTTTA 24394 .......... .......... .......... .......... .......... .......... 556 TACAAAAACA GAAACACAAT ATACACACTT CTGTTGTATA AAGCTAGAGA AAATTGTATT 24334 .......... .......... .......... .......... .......... .......... 556 TTACTGCAAT TGTATAATTC ACAATTGTAT AATTCTTTGA CCTTTTTCTC TGCAATATTT 24274 .......... .......... .......... .......... .......... .......... 556 GAAGTAAAAT GTTTGTAAAT TGTATAATTA AGTGTATAAC ACGAAGATAT AGATTTTTGC 24214 .......... .......... .......... .......... .......... .......... 556 ATGTGTATAT ACAATTTTCT CTCGCTTTAT ACAAAACAGA AACATAATTA TACACTTCTG 24154 .......... .......... .......... .......... .......... .......... 556 TGTATAAAGC GAGAGAGGCG AGCGAGAATG GAGAGTGGCG AGCGAGATTT CTGGGAGAGA 24094 .......... .......... .......... .......... .......... .......... 556 GGCGCTGGCA AATTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA ACCCTAACTA 24034 .......... .......... .......... .......... .......... .......... 556 TTCCATTTAT TTTAGGTTGT TAGTTTGCTA TTATATACAA TTTTCCCAAT TTGAAATCAA 23974 .......... .......... .......... .......... .......... .......... 556 TAATGTTTGA GTATTGATTC TATAAGAATA TCTTCAATTA TTTGGTATCT TCTTAGATAT 23914 .......... .......... .......... .......... .......... .......... 556 TTCAAGCTTA AACTAATTAA ATTTATCGAA TAATTAAATT TTAAAAGACG TAATCTTAAC 23854 .......... .......... .......... .......... .......... .......... 556 TTTAAATGTG ATCTAAAGTG TAACGATCAC TTCTTTCGAG TTTTTGGCCA AAATCATTTT 23794 .......... .......... .......... .......... .......... .......... 556 TAAACTATAC CTCAGACTCA AACTACATCC TTAAAGTATC ATTCTTACCA TGAAACATCC 23734 .......... .......... .......... .......... .......... .......... 556 TTAAAGTATT TTAAAGTTAA TAATTTTCAT CCTTCTACTT GAATTTATCA TAAAACTAAT 23674 .......... .......... .......... .......... .......... .......... 556 TGATATATCC TACAAAATTT AAGTTGTCCC TTCCTAATTA TTATTCTTA 23625 ||| | ||| | || | | ||| || ||||| ||| .......... .......TTT ATGTTCTTCC TACTTAAATA TTATTATTA 588 hqPGS_C04HBa0077O05.1-_SGN-E550207+ (27569 27014,23656 23625) ******************************************************************************** EST sequence 191 +strand 714 n (File: SGN-E390013+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACNAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 28664 to 22730): Exon 1 27569 27014 ( 556 n); cDNA 2 556 ( 555 n); score: 0.879 Intron 1 27013 23657 (3357 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 23656 23625 ( 32 n); cDNA 557 588 ( 32 n); score: 0.781 PPA cDNA 699 714 MATCH C04HBa0077O05.1- SGN-E390013+ 0.879 588 0.824 C PGS_C04HBa0077O05.1-_SGN-E390013+ (27569 27014,23656 23625) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 417 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACA GGTCGTTACA ATAAATATTA GGTATAATAG ATAAATTTAT CATTTTACCT 26974 |||||||||| |||||||||| CGACTAAACA GGTCGTTACA .......... .......... .......... .......... 556 GATCTTATTT CACATGTATG TCATCTATTT TTAGGTGTGT ATAAATAGAT ATTTAAATTA 26914 .......... .......... .......... .......... .......... .......... 556 AATTTGTATA AAGTTGAAGT AGACACTGAA TTCTACGAGA CATAATACAA GTAAGAGATC 26854 .......... .......... .......... .......... .......... .......... 556 TAGGACGCAA ATTGTCATGT AAGATGACAC GCAAAAATGT GTGTATTTAT TTATTCAACG 26794 .......... .......... .......... .......... .......... .......... 556 AATTTATAGA AATATAAGTA TCTACTCGTG CACACTCAAA AATAAAGAAT ATAAATATAA 26734 .......... .......... .......... .......... .......... .......... 556 GTGATAAGAG CATATTTATA TATTATGTCT AACTATTAAT TTGATGTCCG TTGATCACAT 26674 .......... .......... .......... .......... .......... .......... 556 AAAAATTGAA CCAAATGAAT CATTTCCTAC TTATTCTTAA TATACTTAAA TTAGTTATCT 26614 .......... .......... .......... .......... .......... .......... 556 TCCATTATAA CATATACAAT TCATTCATTA TTCGTAACTA TCCTTTGTAA ATATAGGTGC 26554 .......... .......... .......... .......... .......... .......... 556 ATCGTATGTT TAATATATGG ATGAAATATT AATGAAGATG TATAAATTTT ATACGAGAGT 26494 .......... .......... .......... .......... .......... .......... 556 TATACCATTA AAATTAAAAT TTATAATGCT TGGTATAAAA TTATACCAAG AAAAATGTTT 26434 .......... .......... .......... .......... .......... .......... 556 TGCATGAATA TCATCTTAAA CAAAACAACA CACAAATATG CAATTCGAAT GTGCATAGAA 26374 .......... .......... .......... .......... .......... .......... 556 CCAAATATCC CATAAATTTA AGGTCAATGA GCTAGAGTTC ACCCAGGCAA GCAGCCTTAT 26314 .......... .......... .......... .......... .......... .......... 556 TTCCCCCCCC AAATTTAGGC CTTATTTTTT TTCTTTAAGA TTAACATGTC TGAATTTGAA 26254 .......... .......... .......... .......... .......... .......... 556 TAAACATTTG AATAATTTTG TGTCTAAGTT TAAACATTAA ATGATTAATA TTATTTATTT 26194 .......... .......... .......... .......... .......... .......... 556 TTTATCATCT GAATATGAGT AATTATTTAT AATTAAACAT TATAAATATA TAATTTAAAA 26134 .......... .......... .......... .......... .......... .......... 556 TAAGAAAGTA ATTAACCATC GTTTTTTTTT TTCTCAAAGC ATATTTAAAA AGAGGAGGTT 26074 .......... .......... .......... .......... .......... .......... 556 GTTCGATTTT GTAACTACAC AATTAAGAAT AAAACGGTAC TTGCCGATGA TAAAATATCT 26014 .......... .......... .......... .......... .......... .......... 556 ACTTTGAATG CTCTTCTTTC AAAAATTAGT GTGTATAATG AATTTTTTTT AAAAAAAAGA 25954 .......... .......... .......... .......... .......... .......... 556 TATATTTACA TTAGATATGA TGCAGTTAAA CAGTTATTGA AACATGAGGT TATTTTCTTA 25894 .......... .......... .......... .......... .......... .......... 556 GAATGTGTAA GGTCCTAAAA GTTATTTGTA ATCTTTTAAC TAAGGAATTT GACTTGAAAA 25834 .......... .......... .......... .......... .......... .......... 556 TGAATAAATG GTCTTTACCT CGAAGGAGAT GAAACGGGAT GGTGCTAAAG CCCATTGATT 25774 .......... .......... .......... .......... .......... .......... 556 GAGATAATAT GACACAAGGC CATATTTTTT GATGCAGATA GTAGGGGCGA TTCAACTCTA 25714 .......... .......... .......... .......... .......... .......... 556 AAGCCACTAA AGTAATGACT TTAGGCTTCC AAAATATAAC GCCTCAAATT TATTTAATGT 25654 .......... .......... .......... .......... .......... .......... 556 TACAGATATA CAAATATAAA TATACTTATA ATTATGTATC TATAATTAGT ATTAATTGAA 25594 .......... .......... .......... .......... .......... .......... 556 ATTTTCTTAA TAGTTTCTAA TCATGGGCGA ATCCACATGT AAAGGTGGGG TGTACGTCCA 25534 .......... .......... .......... .......... .......... .......... 556 CTCGTTAACT TCGAAAAATC ATGTATAAAT ATATATATAT TGAGAAACTG ATAAGGAAAA 25474 .......... .......... .......... .......... .......... .......... 556 AAAATATAAT AAAAAATGCA ACCTTAATGA ACATTGAACT GGTCTTGATT TGCTGATAGA 25414 .......... .......... .......... .......... .......... .......... 556 AATAAGAAAA TACCTCCTTG CAGACCTAGA TTTCAATCCT GATCAATAAG TCACTATCCT 25354 .......... .......... .......... .......... .......... .......... 556 ATTCAAATCT TGGCTTCGCC TATATTTTGT GTTAAATTTG AACACTAAGA GCCTGTTTGG 25294 .......... .......... .......... .......... .......... .......... 556 CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT TTAGTTGTTT 25234 .......... .......... .......... .......... .......... .......... 556 GGCAATACTC AAAATAACTT ACTTTAAGTT AAAAAAAACT TATTTTAAGC CAAAAGTTAA 25174 .......... .......... .......... .......... .......... .......... 556 AAACTGGGGT AGGGGTGTTT TTTTTTTTTA GCTTATAAGC TGTTTTAAGT TGACCACATT 25114 .......... .......... .......... .......... .......... .......... 556 TTTATCTTTT TGCCATTAAT ATTTTTATGC AATCTCCAAA TTACTCATAT AACTCTAACA 25054 .......... .......... .......... .......... .......... .......... 556 TCTCTTTCTT CCATTTTTCC CTTTTCACGT TTGATATAAC AACTTCAGCA CTTTTATCCA 24994 .......... .......... .......... .......... .......... .......... 556 AACGCATAAC TGCTTATTTT AAAAATAAAT TTCAACACTT CTAAAAGTAA TTTTTTAAAG 24934 .......... .......... .......... .......... .......... .......... 556 CTGCTTTTAT TAAGCCCATC CAAACGGATC CTAAGTCCGT ATTGTTGATT TAACCAAGAT 24874 .......... .......... .......... .......... .......... .......... 556 TGTGCCACCC TCTTAATACA ACCAAAGAGA GAAAAAAGAT AACCTGGTCG GCCCAAAAGT 24814 .......... .......... .......... .......... .......... .......... 556 GACCAGACCA GGTCAATCAT TATACATATA TTTTTGAAAT TTACTATTTT CTAAAAGTAC 24754 .......... .......... .......... .......... .......... .......... 556 AATATAATTA AAAAACGTAT ACAATTTATC AGTTGTTATT TTCTTAATTT GTCTAATTCT 24694 .......... .......... .......... .......... .......... .......... 556 CTTTAATTTG AAAGGGCAAC TTTCACATAT AGGAAATAAA ATATTTATAT TTGTATGCTA 24634 .......... .......... .......... .......... .......... .......... 556 TAGCAAATTT TGTATAATTG CGCTCCATAG CAAACATAAA ACTGTATAAT TCGCTATACA 24574 .......... .......... .......... .......... .......... .......... 556 TATACAAGTG TATAGTTCGC TGGCCTAAAT TGTATAATTC GCTGGCCTAT TTCGCTGCAA 24514 .......... .......... .......... .......... .......... .......... 556 TAGTATAATT CGTTATCCTA TTTCACTGCA ATTGTATAAT GCACGATTAT ATAATTAACT 24454 .......... .......... .......... .......... .......... .......... 556 GCCTATTTCG CTGCAATATT AAGTGTATAG CAAGAAGATA TATGTTTTTC TCTCGCTTTA 24394 .......... .......... .......... .......... .......... .......... 556 TACAAAAACA GAAACACAAT ATACACACTT CTGTTGTATA AAGCTAGAGA AAATTGTATT 24334 .......... .......... .......... .......... .......... .......... 556 TTACTGCAAT TGTATAATTC ACAATTGTAT AATTCTTTGA CCTTTTTCTC TGCAATATTT 24274 .......... .......... .......... .......... .......... .......... 556 GAAGTAAAAT GTTTGTAAAT TGTATAATTA AGTGTATAAC ACGAAGATAT AGATTTTTGC 24214 .......... .......... .......... .......... .......... .......... 556 ATGTGTATAT ACAATTTTCT CTCGCTTTAT ACAAAACAGA AACATAATTA TACACTTCTG 24154 .......... .......... .......... .......... .......... .......... 556 TGTATAAAGC GAGAGAGGCG AGCGAGAATG GAGAGTGGCG AGCGAGATTT CTGGGAGAGA 24094 .......... .......... .......... .......... .......... .......... 556 GGCGCTGGCA AATTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA ACCCTAACTA 24034 .......... .......... .......... .......... .......... .......... 556 TTCCATTTAT TTTAGGTTGT TAGTTTGCTA TTATATACAA TTTTCCCAAT TTGAAATCAA 23974 .......... .......... .......... .......... .......... .......... 556 TAATGTTTGA GTATTGATTC TATAAGAATA TCTTCAATTA TTTGGTATCT TCTTAGATAT 23914 .......... .......... .......... .......... .......... .......... 556 TTCAAGCTTA AACTAATTAA ATTTATCGAA TAATTAAATT TTAAAAGACG TAATCTTAAC 23854 .......... .......... .......... .......... .......... .......... 556 TTTAAATGTG ATCTAAAGTG TAACGATCAC TTCTTTCGAG TTTTTGGCCA AAATCATTTT 23794 .......... .......... .......... .......... .......... .......... 556 TAAACTATAC CTCAGACTCA AACTACATCC TTAAAGTATC ATTCTTACCA TGAAACATCC 23734 .......... .......... .......... .......... .......... .......... 556 TTAAAGTATT TTAAAGTTAA TAATTTTCAT CCTTCTACTT GAATTTATCA TAAAACTAAT 23674 .......... .......... .......... .......... .......... .......... 556 TGATATATCC TACAAAATTT AAGTTGTCCC TTCCTAATTA TTATTCTTA 23625 ||| | ||| | || | | ||| || ||||| ||| .......... .......TTT ATGTTCTTCC TACTTAAATA TTATTATTA 588 hqPGS_C04HBa0077O05.1-_SGN-E390013+ (27569 27014,23656 23625) ******************************************************************************** EST sequence 199 +strand 713 n (File: SGN-E550211+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT ATGCCATAAA 661 ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 28654 to 22730): Exon 1 27569 27014 ( 556 n); cDNA 2 555 ( 554 n); score: 0.878 Intron 1 27013 23657 (3357 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 23656 23625 ( 32 n); cDNA 556 587 ( 32 n); score: 0.781 PPA cDNA 698 713 MATCH C04HBa0077O05.1- SGN-E550211+ 0.878 588 0.825 C PGS_C04HBa0077O05.1-_SGN-E550211+ (27569 27014,23656 23625) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||| | |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAA-C CCTCCTTCTT 59 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 178 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 238 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 297 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 357 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 416 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 475 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 535 CGACTAAACA GGTCGTTACA ATAAATATTA GGTATAATAG ATAAATTTAT CATTTTACCT 26974 |||||||||| |||||||||| CGACTAAACA GGTCGTTACA .......... .......... .......... .......... 555 GATCTTATTT CACATGTATG TCATCTATTT TTAGGTGTGT ATAAATAGAT ATTTAAATTA 26914 .......... .......... .......... .......... .......... .......... 555 AATTTGTATA AAGTTGAAGT AGACACTGAA TTCTACGAGA CATAATACAA GTAAGAGATC 26854 .......... .......... .......... .......... .......... .......... 555 TAGGACGCAA ATTGTCATGT AAGATGACAC GCAAAAATGT GTGTATTTAT TTATTCAACG 26794 .......... .......... .......... .......... .......... .......... 555 AATTTATAGA AATATAAGTA TCTACTCGTG CACACTCAAA AATAAAGAAT ATAAATATAA 26734 .......... .......... .......... .......... .......... .......... 555 GTGATAAGAG CATATTTATA TATTATGTCT AACTATTAAT TTGATGTCCG TTGATCACAT 26674 .......... .......... .......... .......... .......... .......... 555 AAAAATTGAA CCAAATGAAT CATTTCCTAC TTATTCTTAA TATACTTAAA TTAGTTATCT 26614 .......... .......... .......... .......... .......... .......... 555 TCCATTATAA CATATACAAT TCATTCATTA TTCGTAACTA TCCTTTGTAA ATATAGGTGC 26554 .......... .......... .......... .......... .......... .......... 555 ATCGTATGTT TAATATATGG ATGAAATATT AATGAAGATG TATAAATTTT ATACGAGAGT 26494 .......... .......... .......... .......... .......... .......... 555 TATACCATTA AAATTAAAAT TTATAATGCT TGGTATAAAA TTATACCAAG AAAAATGTTT 26434 .......... .......... .......... .......... .......... .......... 555 TGCATGAATA TCATCTTAAA CAAAACAACA CACAAATATG CAATTCGAAT GTGCATAGAA 26374 .......... .......... .......... .......... .......... .......... 555 CCAAATATCC CATAAATTTA AGGTCAATGA GCTAGAGTTC ACCCAGGCAA GCAGCCTTAT 26314 .......... .......... .......... .......... .......... .......... 555 TTCCCCCCCC AAATTTAGGC CTTATTTTTT TTCTTTAAGA TTAACATGTC TGAATTTGAA 26254 .......... .......... .......... .......... .......... .......... 555 TAAACATTTG AATAATTTTG TGTCTAAGTT TAAACATTAA ATGATTAATA TTATTTATTT 26194 .......... .......... .......... .......... .......... .......... 555 TTTATCATCT GAATATGAGT AATTATTTAT AATTAAACAT TATAAATATA TAATTTAAAA 26134 .......... .......... .......... .......... .......... .......... 555 TAAGAAAGTA ATTAACCATC GTTTTTTTTT TTCTCAAAGC ATATTTAAAA AGAGGAGGTT 26074 .......... .......... .......... .......... .......... .......... 555 GTTCGATTTT GTAACTACAC AATTAAGAAT AAAACGGTAC TTGCCGATGA TAAAATATCT 26014 .......... .......... .......... .......... .......... .......... 555 ACTTTGAATG CTCTTCTTTC AAAAATTAGT GTGTATAATG AATTTTTTTT AAAAAAAAGA 25954 .......... .......... .......... .......... .......... .......... 555 TATATTTACA TTAGATATGA TGCAGTTAAA CAGTTATTGA AACATGAGGT TATTTTCTTA 25894 .......... .......... .......... .......... .......... .......... 555 GAATGTGTAA GGTCCTAAAA GTTATTTGTA ATCTTTTAAC TAAGGAATTT GACTTGAAAA 25834 .......... .......... .......... .......... .......... .......... 555 TGAATAAATG GTCTTTACCT CGAAGGAGAT GAAACGGGAT GGTGCTAAAG CCCATTGATT 25774 .......... .......... .......... .......... .......... .......... 555 GAGATAATAT GACACAAGGC CATATTTTTT GATGCAGATA GTAGGGGCGA TTCAACTCTA 25714 .......... .......... .......... .......... .......... .......... 555 AAGCCACTAA AGTAATGACT TTAGGCTTCC AAAATATAAC GCCTCAAATT TATTTAATGT 25654 .......... .......... .......... .......... .......... .......... 555 TACAGATATA CAAATATAAA TATACTTATA ATTATGTATC TATAATTAGT ATTAATTGAA 25594 .......... .......... .......... .......... .......... .......... 555 ATTTTCTTAA TAGTTTCTAA TCATGGGCGA ATCCACATGT AAAGGTGGGG TGTACGTCCA 25534 .......... .......... .......... .......... .......... .......... 555 CTCGTTAACT TCGAAAAATC ATGTATAAAT ATATATATAT TGAGAAACTG ATAAGGAAAA 25474 .......... .......... .......... .......... .......... .......... 555 AAAATATAAT AAAAAATGCA ACCTTAATGA ACATTGAACT GGTCTTGATT TGCTGATAGA 25414 .......... .......... .......... .......... .......... .......... 555 AATAAGAAAA TACCTCCTTG CAGACCTAGA TTTCAATCCT GATCAATAAG TCACTATCCT 25354 .......... .......... .......... .......... .......... .......... 555 ATTCAAATCT TGGCTTCGCC TATATTTTGT GTTAAATTTG AACACTAAGA GCCTGTTTGG 25294 .......... .......... .......... .......... .......... .......... 555 CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT TTAGTTGTTT 25234 .......... .......... .......... .......... .......... .......... 555 GGCAATACTC AAAATAACTT ACTTTAAGTT AAAAAAAACT TATTTTAAGC CAAAAGTTAA 25174 .......... .......... .......... .......... .......... .......... 555 AAACTGGGGT AGGGGTGTTT TTTTTTTTTA GCTTATAAGC TGTTTTAAGT TGACCACATT 25114 .......... .......... .......... .......... .......... .......... 555 TTTATCTTTT TGCCATTAAT ATTTTTATGC AATCTCCAAA TTACTCATAT AACTCTAACA 25054 .......... .......... .......... .......... .......... .......... 555 TCTCTTTCTT CCATTTTTCC CTTTTCACGT TTGATATAAC AACTTCAGCA CTTTTATCCA 24994 .......... .......... .......... .......... .......... .......... 555 AACGCATAAC TGCTTATTTT AAAAATAAAT TTCAACACTT CTAAAAGTAA TTTTTTAAAG 24934 .......... .......... .......... .......... .......... .......... 555 CTGCTTTTAT TAAGCCCATC CAAACGGATC CTAAGTCCGT ATTGTTGATT TAACCAAGAT 24874 .......... .......... .......... .......... .......... .......... 555 TGTGCCACCC TCTTAATACA ACCAAAGAGA GAAAAAAGAT AACCTGGTCG GCCCAAAAGT 24814 .......... .......... .......... .......... .......... .......... 555 GACCAGACCA GGTCAATCAT TATACATATA TTTTTGAAAT TTACTATTTT CTAAAAGTAC 24754 .......... .......... .......... .......... .......... .......... 555 AATATAATTA AAAAACGTAT ACAATTTATC AGTTGTTATT TTCTTAATTT GTCTAATTCT 24694 .......... .......... .......... .......... .......... .......... 555 CTTTAATTTG AAAGGGCAAC TTTCACATAT AGGAAATAAA ATATTTATAT TTGTATGCTA 24634 .......... .......... .......... .......... .......... .......... 555 TAGCAAATTT TGTATAATTG CGCTCCATAG CAAACATAAA ACTGTATAAT TCGCTATACA 24574 .......... .......... .......... .......... .......... .......... 555 TATACAAGTG TATAGTTCGC TGGCCTAAAT TGTATAATTC GCTGGCCTAT TTCGCTGCAA 24514 .......... .......... .......... .......... .......... .......... 555 TAGTATAATT CGTTATCCTA TTTCACTGCA ATTGTATAAT GCACGATTAT ATAATTAACT 24454 .......... .......... .......... .......... .......... .......... 555 GCCTATTTCG CTGCAATATT AAGTGTATAG CAAGAAGATA TATGTTTTTC TCTCGCTTTA 24394 .......... .......... .......... .......... .......... .......... 555 TACAAAAACA GAAACACAAT ATACACACTT CTGTTGTATA AAGCTAGAGA AAATTGTATT 24334 .......... .......... .......... .......... .......... .......... 555 TTACTGCAAT TGTATAATTC ACAATTGTAT AATTCTTTGA CCTTTTTCTC TGCAATATTT 24274 .......... .......... .......... .......... .......... .......... 555 GAAGTAAAAT GTTTGTAAAT TGTATAATTA AGTGTATAAC ACGAAGATAT AGATTTTTGC 24214 .......... .......... .......... .......... .......... .......... 555 ATGTGTATAT ACAATTTTCT CTCGCTTTAT ACAAAACAGA AACATAATTA TACACTTCTG 24154 .......... .......... .......... .......... .......... .......... 555 TGTATAAAGC GAGAGAGGCG AGCGAGAATG GAGAGTGGCG AGCGAGATTT CTGGGAGAGA 24094 .......... .......... .......... .......... .......... .......... 555 GGCGCTGGCA AATTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA ACCCTAACTA 24034 .......... .......... .......... .......... .......... .......... 555 TTCCATTTAT TTTAGGTTGT TAGTTTGCTA TTATATACAA TTTTCCCAAT TTGAAATCAA 23974 .......... .......... .......... .......... .......... .......... 555 TAATGTTTGA GTATTGATTC TATAAGAATA TCTTCAATTA TTTGGTATCT TCTTAGATAT 23914 .......... .......... .......... .......... .......... .......... 555 TTCAAGCTTA AACTAATTAA ATTTATCGAA TAATTAAATT TTAAAAGACG TAATCTTAAC 23854 .......... .......... .......... .......... .......... .......... 555 TTTAAATGTG ATCTAAAGTG TAACGATCAC TTCTTTCGAG TTTTTGGCCA AAATCATTTT 23794 .......... .......... .......... .......... .......... .......... 555 TAAACTATAC CTCAGACTCA AACTACATCC TTAAAGTATC ATTCTTACCA TGAAACATCC 23734 .......... .......... .......... .......... .......... .......... 555 TTAAAGTATT TTAAAGTTAA TAATTTTCAT CCTTCTACTT GAATTTATCA TAAAACTAAT 23674 .......... .......... .......... .......... .......... .......... 555 TGATATATCC TACAAAATTT AAGTTGTCCC TTCCTAATTA TTATTCTTA 23625 ||| | ||| | || | | ||| || ||||| ||| .......... .......TTT ATGTTCTTCC TACTTAAATA TTATTATTA 587 hqPGS_C04HBa0077O05.1-_SGN-E550211+ (27569 27014,23656 23625) ******************************************************************************** EST sequence 201 +strand 713 n (File: SGN-E550464+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GNTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCTA CCATGAATTA ATGAAAAATT ATGCCATAAG 661 ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 28664 to 22740): Exon 1 27569 27014 ( 556 n); cDNA 2 556 ( 555 n); score: 0.878 Intron 1 27013 23657 (3357 n); Pd: 0.000 (s: 0.88), Pa: 0.000 (s: 0) Exon 2 23656 23625 ( 32 n); cDNA 557 588 ( 32 n); score: 0.781 PPA cDNA 698 713 MATCH C04HBa0077O05.1- SGN-E550464+ 0.878 588 0.825 C PGS_C04HBa0077O05.1-_SGN-E550464+ (27569 27014,23656 23625) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 417 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACA GGTCGTTACA ATAAATATTA GGTATAATAG ATAAATTTAT CATTTTACCT 26974 |||||||||| ||||| |||| CGACTAAACA GGTCGNTACA .......... .......... .......... .......... 556 GATCTTATTT CACATGTATG TCATCTATTT TTAGGTGTGT ATAAATAGAT ATTTAAATTA 26914 .......... .......... .......... .......... .......... .......... 556 AATTTGTATA AAGTTGAAGT AGACACTGAA TTCTACGAGA CATAATACAA GTAAGAGATC 26854 .......... .......... .......... .......... .......... .......... 556 TAGGACGCAA ATTGTCATGT AAGATGACAC GCAAAAATGT GTGTATTTAT TTATTCAACG 26794 .......... .......... .......... .......... .......... .......... 556 AATTTATAGA AATATAAGTA TCTACTCGTG CACACTCAAA AATAAAGAAT ATAAATATAA 26734 .......... .......... .......... .......... .......... .......... 556 GTGATAAGAG CATATTTATA TATTATGTCT AACTATTAAT TTGATGTCCG TTGATCACAT 26674 .......... .......... .......... .......... .......... .......... 556 AAAAATTGAA CCAAATGAAT CATTTCCTAC TTATTCTTAA TATACTTAAA TTAGTTATCT 26614 .......... .......... .......... .......... .......... .......... 556 TCCATTATAA CATATACAAT TCATTCATTA TTCGTAACTA TCCTTTGTAA ATATAGGTGC 26554 .......... .......... .......... .......... .......... .......... 556 ATCGTATGTT TAATATATGG ATGAAATATT AATGAAGATG TATAAATTTT ATACGAGAGT 26494 .......... .......... .......... .......... .......... .......... 556 TATACCATTA AAATTAAAAT TTATAATGCT TGGTATAAAA TTATACCAAG AAAAATGTTT 26434 .......... .......... .......... .......... .......... .......... 556 TGCATGAATA TCATCTTAAA CAAAACAACA CACAAATATG CAATTCGAAT GTGCATAGAA 26374 .......... .......... .......... .......... .......... .......... 556 CCAAATATCC CATAAATTTA AGGTCAATGA GCTAGAGTTC ACCCAGGCAA GCAGCCTTAT 26314 .......... .......... .......... .......... .......... .......... 556 TTCCCCCCCC AAATTTAGGC CTTATTTTTT TTCTTTAAGA TTAACATGTC TGAATTTGAA 26254 .......... .......... .......... .......... .......... .......... 556 TAAACATTTG AATAATTTTG TGTCTAAGTT TAAACATTAA ATGATTAATA TTATTTATTT 26194 .......... .......... .......... .......... .......... .......... 556 TTTATCATCT GAATATGAGT AATTATTTAT AATTAAACAT TATAAATATA TAATTTAAAA 26134 .......... .......... .......... .......... .......... .......... 556 TAAGAAAGTA ATTAACCATC GTTTTTTTTT TTCTCAAAGC ATATTTAAAA AGAGGAGGTT 26074 .......... .......... .......... .......... .......... .......... 556 GTTCGATTTT GTAACTACAC AATTAAGAAT AAAACGGTAC TTGCCGATGA TAAAATATCT 26014 .......... .......... .......... .......... .......... .......... 556 ACTTTGAATG CTCTTCTTTC AAAAATTAGT GTGTATAATG AATTTTTTTT AAAAAAAAGA 25954 .......... .......... .......... .......... .......... .......... 556 TATATTTACA TTAGATATGA TGCAGTTAAA CAGTTATTGA AACATGAGGT TATTTTCTTA 25894 .......... .......... .......... .......... .......... .......... 556 GAATGTGTAA GGTCCTAAAA GTTATTTGTA ATCTTTTAAC TAAGGAATTT GACTTGAAAA 25834 .......... .......... .......... .......... .......... .......... 556 TGAATAAATG GTCTTTACCT CGAAGGAGAT GAAACGGGAT GGTGCTAAAG CCCATTGATT 25774 .......... .......... .......... .......... .......... .......... 556 GAGATAATAT GACACAAGGC CATATTTTTT GATGCAGATA GTAGGGGCGA TTCAACTCTA 25714 .......... .......... .......... .......... .......... .......... 556 AAGCCACTAA AGTAATGACT TTAGGCTTCC AAAATATAAC GCCTCAAATT TATTTAATGT 25654 .......... .......... .......... .......... .......... .......... 556 TACAGATATA CAAATATAAA TATACTTATA ATTATGTATC TATAATTAGT ATTAATTGAA 25594 .......... .......... .......... .......... .......... .......... 556 ATTTTCTTAA TAGTTTCTAA TCATGGGCGA ATCCACATGT AAAGGTGGGG TGTACGTCCA 25534 .......... .......... .......... .......... .......... .......... 556 CTCGTTAACT TCGAAAAATC ATGTATAAAT ATATATATAT TGAGAAACTG ATAAGGAAAA 25474 .......... .......... .......... .......... .......... .......... 556 AAAATATAAT AAAAAATGCA ACCTTAATGA ACATTGAACT GGTCTTGATT TGCTGATAGA 25414 .......... .......... .......... .......... .......... .......... 556 AATAAGAAAA TACCTCCTTG CAGACCTAGA TTTCAATCCT GATCAATAAG TCACTATCCT 25354 .......... .......... .......... .......... .......... .......... 556 ATTCAAATCT TGGCTTCGCC TATATTTTGT GTTAAATTTG AACACTAAGA GCCTGTTTGG 25294 .......... .......... .......... .......... .......... .......... 556 CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT TTAGTTGTTT 25234 .......... .......... .......... .......... .......... .......... 556 GGCAATACTC AAAATAACTT ACTTTAAGTT AAAAAAAACT TATTTTAAGC CAAAAGTTAA 25174 .......... .......... .......... .......... .......... .......... 556 AAACTGGGGT AGGGGTGTTT TTTTTTTTTA GCTTATAAGC TGTTTTAAGT TGACCACATT 25114 .......... .......... .......... .......... .......... .......... 556 TTTATCTTTT TGCCATTAAT ATTTTTATGC AATCTCCAAA TTACTCATAT AACTCTAACA 25054 .......... .......... .......... .......... .......... .......... 556 TCTCTTTCTT CCATTTTTCC CTTTTCACGT TTGATATAAC AACTTCAGCA CTTTTATCCA 24994 .......... .......... .......... .......... .......... .......... 556 AACGCATAAC TGCTTATTTT AAAAATAAAT TTCAACACTT CTAAAAGTAA TTTTTTAAAG 24934 .......... .......... .......... .......... .......... .......... 556 CTGCTTTTAT TAAGCCCATC CAAACGGATC CTAAGTCCGT ATTGTTGATT TAACCAAGAT 24874 .......... .......... .......... .......... .......... .......... 556 TGTGCCACCC TCTTAATACA ACCAAAGAGA GAAAAAAGAT AACCTGGTCG GCCCAAAAGT 24814 .......... .......... .......... .......... .......... .......... 556 GACCAGACCA GGTCAATCAT TATACATATA TTTTTGAAAT TTACTATTTT CTAAAAGTAC 24754 .......... .......... .......... .......... .......... .......... 556 AATATAATTA AAAAACGTAT ACAATTTATC AGTTGTTATT TTCTTAATTT GTCTAATTCT 24694 .......... .......... .......... .......... .......... .......... 556 CTTTAATTTG AAAGGGCAAC TTTCACATAT AGGAAATAAA ATATTTATAT TTGTATGCTA 24634 .......... .......... .......... .......... .......... .......... 556 TAGCAAATTT TGTATAATTG CGCTCCATAG CAAACATAAA ACTGTATAAT TCGCTATACA 24574 .......... .......... .......... .......... .......... .......... 556 TATACAAGTG TATAGTTCGC TGGCCTAAAT TGTATAATTC GCTGGCCTAT TTCGCTGCAA 24514 .......... .......... .......... .......... .......... .......... 556 TAGTATAATT CGTTATCCTA TTTCACTGCA ATTGTATAAT GCACGATTAT ATAATTAACT 24454 .......... .......... .......... .......... .......... .......... 556 GCCTATTTCG CTGCAATATT AAGTGTATAG CAAGAAGATA TATGTTTTTC TCTCGCTTTA 24394 .......... .......... .......... .......... .......... .......... 556 TACAAAAACA GAAACACAAT ATACACACTT CTGTTGTATA AAGCTAGAGA AAATTGTATT 24334 .......... .......... .......... .......... .......... .......... 556 TTACTGCAAT TGTATAATTC ACAATTGTAT AATTCTTTGA CCTTTTTCTC TGCAATATTT 24274 .......... .......... .......... .......... .......... .......... 556 GAAGTAAAAT GTTTGTAAAT TGTATAATTA AGTGTATAAC ACGAAGATAT AGATTTTTGC 24214 .......... .......... .......... .......... .......... .......... 556 ATGTGTATAT ACAATTTTCT CTCGCTTTAT ACAAAACAGA AACATAATTA TACACTTCTG 24154 .......... .......... .......... .......... .......... .......... 556 TGTATAAAGC GAGAGAGGCG AGCGAGAATG GAGAGTGGCG AGCGAGATTT CTGGGAGAGA 24094 .......... .......... .......... .......... .......... .......... 556 GGCGCTGGCA AATTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA ACCCTAACTA 24034 .......... .......... .......... .......... .......... .......... 556 TTCCATTTAT TTTAGGTTGT TAGTTTGCTA TTATATACAA TTTTCCCAAT TTGAAATCAA 23974 .......... .......... .......... .......... .......... .......... 556 TAATGTTTGA GTATTGATTC TATAAGAATA TCTTCAATTA TTTGGTATCT TCTTAGATAT 23914 .......... .......... .......... .......... .......... .......... 556 TTCAAGCTTA AACTAATTAA ATTTATCGAA TAATTAAATT TTAAAAGACG TAATCTTAAC 23854 .......... .......... .......... .......... .......... .......... 556 TTTAAATGTG ATCTAAAGTG TAACGATCAC TTCTTTCGAG TTTTTGGCCA AAATCATTTT 23794 .......... .......... .......... .......... .......... .......... 556 TAAACTATAC CTCAGACTCA AACTACATCC TTAAAGTATC ATTCTTACCA TGAAACATCC 23734 .......... .......... .......... .......... .......... .......... 556 TTAAAGTATT TTAAAGTTAA TAATTTTCAT CCTTCTACTT GAATTTATCA TAAAACTAAT 23674 .......... .......... .......... .......... .......... .......... 556 TGATATATCC TACAAAATTT AAGTTGTCCC TTCCTAATTA TTATTCTTA 23625 ||| | ||| | || | | ||| || ||||| ||| .......... .......TTT ATGTTCTTCC TACTTAAATA TTATTATTA 588 hqPGS_C04HBa0077O05.1-_SGN-E550464+ (27569 27014,23656 23625) ******************************************************************************** EST sequence 206 +strand 713 n (File: SGN-E549941+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA TATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCGA CCNATGATTA ATGAAAAATT ATGCCATCAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 28664 to 22740): Exon 1 27569 27014 ( 556 n); cDNA 2 556 ( 555 n); score: 0.879 Intron 1 27013 23657 (3357 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 23656 23625 ( 32 n); cDNA 557 588 ( 32 n); score: 0.781 PPA cDNA 699 713 MATCH C04HBa0077O05.1- SGN-E549941+ 0.879 588 0.825 C PGS_C04HBa0077O05.1-_SGN-E549941+ (27569 27014,23656 23625) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 417 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAATATCTG CTACTCAAAA 536 CGACTAAACA GGTCGTTACA ATAAATATTA GGTATAATAG ATAAATTTAT CATTTTACCT 26974 |||||||||| |||||||||| CGACTAAACA GGTCGTTACA .......... .......... .......... .......... 556 GATCTTATTT CACATGTATG TCATCTATTT TTAGGTGTGT ATAAATAGAT ATTTAAATTA 26914 .......... .......... .......... .......... .......... .......... 556 AATTTGTATA AAGTTGAAGT AGACACTGAA TTCTACGAGA CATAATACAA GTAAGAGATC 26854 .......... .......... .......... .......... .......... .......... 556 TAGGACGCAA ATTGTCATGT AAGATGACAC GCAAAAATGT GTGTATTTAT TTATTCAACG 26794 .......... .......... .......... .......... .......... .......... 556 AATTTATAGA AATATAAGTA TCTACTCGTG CACACTCAAA AATAAAGAAT ATAAATATAA 26734 .......... .......... .......... .......... .......... .......... 556 GTGATAAGAG CATATTTATA TATTATGTCT AACTATTAAT TTGATGTCCG TTGATCACAT 26674 .......... .......... .......... .......... .......... .......... 556 AAAAATTGAA CCAAATGAAT CATTTCCTAC TTATTCTTAA TATACTTAAA TTAGTTATCT 26614 .......... .......... .......... .......... .......... .......... 556 TCCATTATAA CATATACAAT TCATTCATTA TTCGTAACTA TCCTTTGTAA ATATAGGTGC 26554 .......... .......... .......... .......... .......... .......... 556 ATCGTATGTT TAATATATGG ATGAAATATT AATGAAGATG TATAAATTTT ATACGAGAGT 26494 .......... .......... .......... .......... .......... .......... 556 TATACCATTA AAATTAAAAT TTATAATGCT TGGTATAAAA TTATACCAAG AAAAATGTTT 26434 .......... .......... .......... .......... .......... .......... 556 TGCATGAATA TCATCTTAAA CAAAACAACA CACAAATATG CAATTCGAAT GTGCATAGAA 26374 .......... .......... .......... .......... .......... .......... 556 CCAAATATCC CATAAATTTA AGGTCAATGA GCTAGAGTTC ACCCAGGCAA GCAGCCTTAT 26314 .......... .......... .......... .......... .......... .......... 556 TTCCCCCCCC AAATTTAGGC CTTATTTTTT TTCTTTAAGA TTAACATGTC TGAATTTGAA 26254 .......... .......... .......... .......... .......... .......... 556 TAAACATTTG AATAATTTTG TGTCTAAGTT TAAACATTAA ATGATTAATA TTATTTATTT 26194 .......... .......... .......... .......... .......... .......... 556 TTTATCATCT GAATATGAGT AATTATTTAT AATTAAACAT TATAAATATA TAATTTAAAA 26134 .......... .......... .......... .......... .......... .......... 556 TAAGAAAGTA ATTAACCATC GTTTTTTTTT TTCTCAAAGC ATATTTAAAA AGAGGAGGTT 26074 .......... .......... .......... .......... .......... .......... 556 GTTCGATTTT GTAACTACAC AATTAAGAAT AAAACGGTAC TTGCCGATGA TAAAATATCT 26014 .......... .......... .......... .......... .......... .......... 556 ACTTTGAATG CTCTTCTTTC AAAAATTAGT GTGTATAATG AATTTTTTTT AAAAAAAAGA 25954 .......... .......... .......... .......... .......... .......... 556 TATATTTACA TTAGATATGA TGCAGTTAAA CAGTTATTGA AACATGAGGT TATTTTCTTA 25894 .......... .......... .......... .......... .......... .......... 556 GAATGTGTAA GGTCCTAAAA GTTATTTGTA ATCTTTTAAC TAAGGAATTT GACTTGAAAA 25834 .......... .......... .......... .......... .......... .......... 556 TGAATAAATG GTCTTTACCT CGAAGGAGAT GAAACGGGAT GGTGCTAAAG CCCATTGATT 25774 .......... .......... .......... .......... .......... .......... 556 GAGATAATAT GACACAAGGC CATATTTTTT GATGCAGATA GTAGGGGCGA TTCAACTCTA 25714 .......... .......... .......... .......... .......... .......... 556 AAGCCACTAA AGTAATGACT TTAGGCTTCC AAAATATAAC GCCTCAAATT TATTTAATGT 25654 .......... .......... .......... .......... .......... .......... 556 TACAGATATA CAAATATAAA TATACTTATA ATTATGTATC TATAATTAGT ATTAATTGAA 25594 .......... .......... .......... .......... .......... .......... 556 ATTTTCTTAA TAGTTTCTAA TCATGGGCGA ATCCACATGT AAAGGTGGGG TGTACGTCCA 25534 .......... .......... .......... .......... .......... .......... 556 CTCGTTAACT TCGAAAAATC ATGTATAAAT ATATATATAT TGAGAAACTG ATAAGGAAAA 25474 .......... .......... .......... .......... .......... .......... 556 AAAATATAAT AAAAAATGCA ACCTTAATGA ACATTGAACT GGTCTTGATT TGCTGATAGA 25414 .......... .......... .......... .......... .......... .......... 556 AATAAGAAAA TACCTCCTTG CAGACCTAGA TTTCAATCCT GATCAATAAG TCACTATCCT 25354 .......... .......... .......... .......... .......... .......... 556 ATTCAAATCT TGGCTTCGCC TATATTTTGT GTTAAATTTG AACACTAAGA GCCTGTTTGG 25294 .......... .......... .......... .......... .......... .......... 556 CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT TTAGTTGTTT 25234 .......... .......... .......... .......... .......... .......... 556 GGCAATACTC AAAATAACTT ACTTTAAGTT AAAAAAAACT TATTTTAAGC CAAAAGTTAA 25174 .......... .......... .......... .......... .......... .......... 556 AAACTGGGGT AGGGGTGTTT TTTTTTTTTA GCTTATAAGC TGTTTTAAGT TGACCACATT 25114 .......... .......... .......... .......... .......... .......... 556 TTTATCTTTT TGCCATTAAT ATTTTTATGC AATCTCCAAA TTACTCATAT AACTCTAACA 25054 .......... .......... .......... .......... .......... .......... 556 TCTCTTTCTT CCATTTTTCC CTTTTCACGT TTGATATAAC AACTTCAGCA CTTTTATCCA 24994 .......... .......... .......... .......... .......... .......... 556 AACGCATAAC TGCTTATTTT AAAAATAAAT TTCAACACTT CTAAAAGTAA TTTTTTAAAG 24934 .......... .......... .......... .......... .......... .......... 556 CTGCTTTTAT TAAGCCCATC CAAACGGATC CTAAGTCCGT ATTGTTGATT TAACCAAGAT 24874 .......... .......... .......... .......... .......... .......... 556 TGTGCCACCC TCTTAATACA ACCAAAGAGA GAAAAAAGAT AACCTGGTCG GCCCAAAAGT 24814 .......... .......... .......... .......... .......... .......... 556 GACCAGACCA GGTCAATCAT TATACATATA TTTTTGAAAT TTACTATTTT CTAAAAGTAC 24754 .......... .......... .......... .......... .......... .......... 556 AATATAATTA AAAAACGTAT ACAATTTATC AGTTGTTATT TTCTTAATTT GTCTAATTCT 24694 .......... .......... .......... .......... .......... .......... 556 CTTTAATTTG AAAGGGCAAC TTTCACATAT AGGAAATAAA ATATTTATAT TTGTATGCTA 24634 .......... .......... .......... .......... .......... .......... 556 TAGCAAATTT TGTATAATTG CGCTCCATAG CAAACATAAA ACTGTATAAT TCGCTATACA 24574 .......... .......... .......... .......... .......... .......... 556 TATACAAGTG TATAGTTCGC TGGCCTAAAT TGTATAATTC GCTGGCCTAT TTCGCTGCAA 24514 .......... .......... .......... .......... .......... .......... 556 TAGTATAATT CGTTATCCTA TTTCACTGCA ATTGTATAAT GCACGATTAT ATAATTAACT 24454 .......... .......... .......... .......... .......... .......... 556 GCCTATTTCG CTGCAATATT AAGTGTATAG CAAGAAGATA TATGTTTTTC TCTCGCTTTA 24394 .......... .......... .......... .......... .......... .......... 556 TACAAAAACA GAAACACAAT ATACACACTT CTGTTGTATA AAGCTAGAGA AAATTGTATT 24334 .......... .......... .......... .......... .......... .......... 556 TTACTGCAAT TGTATAATTC ACAATTGTAT AATTCTTTGA CCTTTTTCTC TGCAATATTT 24274 .......... .......... .......... .......... .......... .......... 556 GAAGTAAAAT GTTTGTAAAT TGTATAATTA AGTGTATAAC ACGAAGATAT AGATTTTTGC 24214 .......... .......... .......... .......... .......... .......... 556 ATGTGTATAT ACAATTTTCT CTCGCTTTAT ACAAAACAGA AACATAATTA TACACTTCTG 24154 .......... .......... .......... .......... .......... .......... 556 TGTATAAAGC GAGAGAGGCG AGCGAGAATG GAGAGTGGCG AGCGAGATTT CTGGGAGAGA 24094 .......... .......... .......... .......... .......... .......... 556 GGCGCTGGCA AATTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA ACCCTAACTA 24034 .......... .......... .......... .......... .......... .......... 556 TTCCATTTAT TTTAGGTTGT TAGTTTGCTA TTATATACAA TTTTCCCAAT TTGAAATCAA 23974 .......... .......... .......... .......... .......... .......... 556 TAATGTTTGA GTATTGATTC TATAAGAATA TCTTCAATTA TTTGGTATCT TCTTAGATAT 23914 .......... .......... .......... .......... .......... .......... 556 TTCAAGCTTA AACTAATTAA ATTTATCGAA TAATTAAATT TTAAAAGACG TAATCTTAAC 23854 .......... .......... .......... .......... .......... .......... 556 TTTAAATGTG ATCTAAAGTG TAACGATCAC TTCTTTCGAG TTTTTGGCCA AAATCATTTT 23794 .......... .......... .......... .......... .......... .......... 556 TAAACTATAC CTCAGACTCA AACTACATCC TTAAAGTATC ATTCTTACCA TGAAACATCC 23734 .......... .......... .......... .......... .......... .......... 556 TTAAAGTATT TTAAAGTTAA TAATTTTCAT CCTTCTACTT GAATTTATCA TAAAACTAAT 23674 .......... .......... .......... .......... .......... .......... 556 TGATATATCC TACAAAATTT AAGTTGTCCC TTCCTAATTA TTATTCTTA 23625 ||| | ||| | || | | ||| || ||||| ||| .......... .......TTT ATGTTCTTCC TACTTAAATA TTATTATTA 588 hqPGS_C04HBa0077O05.1-_SGN-E549941+ (27569 27014,23656 23625) ******************************************************************************** EST sequence 209 +strand 714 n (File: SGN-E550025+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 28664 to 22730): Exon 1 27569 27014 ( 556 n); cDNA 2 556 ( 555 n); score: 0.879 Intron 1 27013 23657 (3357 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 23656 23625 ( 32 n); cDNA 557 588 ( 32 n); score: 0.781 PPA cDNA 699 714 MATCH C04HBa0077O05.1- SGN-E550025+ 0.879 588 0.824 C PGS_C04HBa0077O05.1-_SGN-E550025+ (27569 27014,23656 23625) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 417 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACA GGTCGTTACA ATAAATATTA GGTATAATAG ATAAATTTAT CATTTTACCT 26974 |||||||||| |||||||||| CGACTAAACA GGTCGTTACA .......... .......... .......... .......... 556 GATCTTATTT CACATGTATG TCATCTATTT TTAGGTGTGT ATAAATAGAT ATTTAAATTA 26914 .......... .......... .......... .......... .......... .......... 556 AATTTGTATA AAGTTGAAGT AGACACTGAA TTCTACGAGA CATAATACAA GTAAGAGATC 26854 .......... .......... .......... .......... .......... .......... 556 TAGGACGCAA ATTGTCATGT AAGATGACAC GCAAAAATGT GTGTATTTAT TTATTCAACG 26794 .......... .......... .......... .......... .......... .......... 556 AATTTATAGA AATATAAGTA TCTACTCGTG CACACTCAAA AATAAAGAAT ATAAATATAA 26734 .......... .......... .......... .......... .......... .......... 556 GTGATAAGAG CATATTTATA TATTATGTCT AACTATTAAT TTGATGTCCG TTGATCACAT 26674 .......... .......... .......... .......... .......... .......... 556 AAAAATTGAA CCAAATGAAT CATTTCCTAC TTATTCTTAA TATACTTAAA TTAGTTATCT 26614 .......... .......... .......... .......... .......... .......... 556 TCCATTATAA CATATACAAT TCATTCATTA TTCGTAACTA TCCTTTGTAA ATATAGGTGC 26554 .......... .......... .......... .......... .......... .......... 556 ATCGTATGTT TAATATATGG ATGAAATATT AATGAAGATG TATAAATTTT ATACGAGAGT 26494 .......... .......... .......... .......... .......... .......... 556 TATACCATTA AAATTAAAAT TTATAATGCT TGGTATAAAA TTATACCAAG AAAAATGTTT 26434 .......... .......... .......... .......... .......... .......... 556 TGCATGAATA TCATCTTAAA CAAAACAACA CACAAATATG CAATTCGAAT GTGCATAGAA 26374 .......... .......... .......... .......... .......... .......... 556 CCAAATATCC CATAAATTTA AGGTCAATGA GCTAGAGTTC ACCCAGGCAA GCAGCCTTAT 26314 .......... .......... .......... .......... .......... .......... 556 TTCCCCCCCC AAATTTAGGC CTTATTTTTT TTCTTTAAGA TTAACATGTC TGAATTTGAA 26254 .......... .......... .......... .......... .......... .......... 556 TAAACATTTG AATAATTTTG TGTCTAAGTT TAAACATTAA ATGATTAATA TTATTTATTT 26194 .......... .......... .......... .......... .......... .......... 556 TTTATCATCT GAATATGAGT AATTATTTAT AATTAAACAT TATAAATATA TAATTTAAAA 26134 .......... .......... .......... .......... .......... .......... 556 TAAGAAAGTA ATTAACCATC GTTTTTTTTT TTCTCAAAGC ATATTTAAAA AGAGGAGGTT 26074 .......... .......... .......... .......... .......... .......... 556 GTTCGATTTT GTAACTACAC AATTAAGAAT AAAACGGTAC TTGCCGATGA TAAAATATCT 26014 .......... .......... .......... .......... .......... .......... 556 ACTTTGAATG CTCTTCTTTC AAAAATTAGT GTGTATAATG AATTTTTTTT AAAAAAAAGA 25954 .......... .......... .......... .......... .......... .......... 556 TATATTTACA TTAGATATGA TGCAGTTAAA CAGTTATTGA AACATGAGGT TATTTTCTTA 25894 .......... .......... .......... .......... .......... .......... 556 GAATGTGTAA GGTCCTAAAA GTTATTTGTA ATCTTTTAAC TAAGGAATTT GACTTGAAAA 25834 .......... .......... .......... .......... .......... .......... 556 TGAATAAATG GTCTTTACCT CGAAGGAGAT GAAACGGGAT GGTGCTAAAG CCCATTGATT 25774 .......... .......... .......... .......... .......... .......... 556 GAGATAATAT GACACAAGGC CATATTTTTT GATGCAGATA GTAGGGGCGA TTCAACTCTA 25714 .......... .......... .......... .......... .......... .......... 556 AAGCCACTAA AGTAATGACT TTAGGCTTCC AAAATATAAC GCCTCAAATT TATTTAATGT 25654 .......... .......... .......... .......... .......... .......... 556 TACAGATATA CAAATATAAA TATACTTATA ATTATGTATC TATAATTAGT ATTAATTGAA 25594 .......... .......... .......... .......... .......... .......... 556 ATTTTCTTAA TAGTTTCTAA TCATGGGCGA ATCCACATGT AAAGGTGGGG TGTACGTCCA 25534 .......... .......... .......... .......... .......... .......... 556 CTCGTTAACT TCGAAAAATC ATGTATAAAT ATATATATAT TGAGAAACTG ATAAGGAAAA 25474 .......... .......... .......... .......... .......... .......... 556 AAAATATAAT AAAAAATGCA ACCTTAATGA ACATTGAACT GGTCTTGATT TGCTGATAGA 25414 .......... .......... .......... .......... .......... .......... 556 AATAAGAAAA TACCTCCTTG CAGACCTAGA TTTCAATCCT GATCAATAAG TCACTATCCT 25354 .......... .......... .......... .......... .......... .......... 556 ATTCAAATCT TGGCTTCGCC TATATTTTGT GTTAAATTTG AACACTAAGA GCCTGTTTGG 25294 .......... .......... .......... .......... .......... .......... 556 CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT TTAGTTGTTT 25234 .......... .......... .......... .......... .......... .......... 556 GGCAATACTC AAAATAACTT ACTTTAAGTT AAAAAAAACT TATTTTAAGC CAAAAGTTAA 25174 .......... .......... .......... .......... .......... .......... 556 AAACTGGGGT AGGGGTGTTT TTTTTTTTTA GCTTATAAGC TGTTTTAAGT TGACCACATT 25114 .......... .......... .......... .......... .......... .......... 556 TTTATCTTTT TGCCATTAAT ATTTTTATGC AATCTCCAAA TTACTCATAT AACTCTAACA 25054 .......... .......... .......... .......... .......... .......... 556 TCTCTTTCTT CCATTTTTCC CTTTTCACGT TTGATATAAC AACTTCAGCA CTTTTATCCA 24994 .......... .......... .......... .......... .......... .......... 556 AACGCATAAC TGCTTATTTT AAAAATAAAT TTCAACACTT CTAAAAGTAA TTTTTTAAAG 24934 .......... .......... .......... .......... .......... .......... 556 CTGCTTTTAT TAAGCCCATC CAAACGGATC CTAAGTCCGT ATTGTTGATT TAACCAAGAT 24874 .......... .......... .......... .......... .......... .......... 556 TGTGCCACCC TCTTAATACA ACCAAAGAGA GAAAAAAGAT AACCTGGTCG GCCCAAAAGT 24814 .......... .......... .......... .......... .......... .......... 556 GACCAGACCA GGTCAATCAT TATACATATA TTTTTGAAAT TTACTATTTT CTAAAAGTAC 24754 .......... .......... .......... .......... .......... .......... 556 AATATAATTA AAAAACGTAT ACAATTTATC AGTTGTTATT TTCTTAATTT GTCTAATTCT 24694 .......... .......... .......... .......... .......... .......... 556 CTTTAATTTG AAAGGGCAAC TTTCACATAT AGGAAATAAA ATATTTATAT TTGTATGCTA 24634 .......... .......... .......... .......... .......... .......... 556 TAGCAAATTT TGTATAATTG CGCTCCATAG CAAACATAAA ACTGTATAAT TCGCTATACA 24574 .......... .......... .......... .......... .......... .......... 556 TATACAAGTG TATAGTTCGC TGGCCTAAAT TGTATAATTC GCTGGCCTAT TTCGCTGCAA 24514 .......... .......... .......... .......... .......... .......... 556 TAGTATAATT CGTTATCCTA TTTCACTGCA ATTGTATAAT GCACGATTAT ATAATTAACT 24454 .......... .......... .......... .......... .......... .......... 556 GCCTATTTCG CTGCAATATT AAGTGTATAG CAAGAAGATA TATGTTTTTC TCTCGCTTTA 24394 .......... .......... .......... .......... .......... .......... 556 TACAAAAACA GAAACACAAT ATACACACTT CTGTTGTATA AAGCTAGAGA AAATTGTATT 24334 .......... .......... .......... .......... .......... .......... 556 TTACTGCAAT TGTATAATTC ACAATTGTAT AATTCTTTGA CCTTTTTCTC TGCAATATTT 24274 .......... .......... .......... .......... .......... .......... 556 GAAGTAAAAT GTTTGTAAAT TGTATAATTA AGTGTATAAC ACGAAGATAT AGATTTTTGC 24214 .......... .......... .......... .......... .......... .......... 556 ATGTGTATAT ACAATTTTCT CTCGCTTTAT ACAAAACAGA AACATAATTA TACACTTCTG 24154 .......... .......... .......... .......... .......... .......... 556 TGTATAAAGC GAGAGAGGCG AGCGAGAATG GAGAGTGGCG AGCGAGATTT CTGGGAGAGA 24094 .......... .......... .......... .......... .......... .......... 556 GGCGCTGGCA AATTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA ACCCTAACTA 24034 .......... .......... .......... .......... .......... .......... 556 TTCCATTTAT TTTAGGTTGT TAGTTTGCTA TTATATACAA TTTTCCCAAT TTGAAATCAA 23974 .......... .......... .......... .......... .......... .......... 556 TAATGTTTGA GTATTGATTC TATAAGAATA TCTTCAATTA TTTGGTATCT TCTTAGATAT 23914 .......... .......... .......... .......... .......... .......... 556 TTCAAGCTTA AACTAATTAA ATTTATCGAA TAATTAAATT TTAAAAGACG TAATCTTAAC 23854 .......... .......... .......... .......... .......... .......... 556 TTTAAATGTG ATCTAAAGTG TAACGATCAC TTCTTTCGAG TTTTTGGCCA AAATCATTTT 23794 .......... .......... .......... .......... .......... .......... 556 TAAACTATAC CTCAGACTCA AACTACATCC TTAAAGTATC ATTCTTACCA TGAAACATCC 23734 .......... .......... .......... .......... .......... .......... 556 TTAAAGTATT TTAAAGTTAA TAATTTTCAT CCTTCTACTT GAATTTATCA TAAAACTAAT 23674 .......... .......... .......... .......... .......... .......... 556 TGATATATCC TACAAAATTT AAGTTGTCCC TTCCTAATTA TTATTCTTA 23625 ||| | ||| | || | | ||| || ||||| ||| .......... .......TTT ATGTTCTTCC TACTTAAATA TTATTATTA 588 hqPGS_C04HBa0077O05.1-_SGN-E550025+ (27569 27014,23656 23625) ******************************************************************************** EST sequence 267 +strand 690 n (File: SGN-E377133+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT ATGCCATAAA 661 ATATAAAAAA TTTACTCATT TTTCATTGAG Predicted gene structure (within gDNA segment 28654 to 22960): Exon 1 27569 27014 ( 556 n); cDNA 1 555 ( 555 n); score: 0.879 Intron 1 27013 23657 (3357 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 23656 23625 ( 32 n); cDNA 556 587 ( 32 n); score: 0.781 MATCH C04HBa0077O05.1- SGN-E377133+ 0.879 588 0.852 C PGS_C04HBa0077O05.1-_SGN-E377133+ (27569 27014,23656 23625) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 59 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 178 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 238 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 297 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 357 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 416 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 475 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 535 CGACTAAACA GGTCGTTACA ATAAATATTA GGTATAATAG ATAAATTTAT CATTTTACCT 26974 |||||||||| |||||||||| CGACTAAACA GGTCGTTACA .......... .......... .......... .......... 555 GATCTTATTT CACATGTATG TCATCTATTT TTAGGTGTGT ATAAATAGAT ATTTAAATTA 26914 .......... .......... .......... .......... .......... .......... 555 AATTTGTATA AAGTTGAAGT AGACACTGAA TTCTACGAGA CATAATACAA GTAAGAGATC 26854 .......... .......... .......... .......... .......... .......... 555 TAGGACGCAA ATTGTCATGT AAGATGACAC GCAAAAATGT GTGTATTTAT TTATTCAACG 26794 .......... .......... .......... .......... .......... .......... 555 AATTTATAGA AATATAAGTA TCTACTCGTG CACACTCAAA AATAAAGAAT ATAAATATAA 26734 .......... .......... .......... .......... .......... .......... 555 GTGATAAGAG CATATTTATA TATTATGTCT AACTATTAAT TTGATGTCCG TTGATCACAT 26674 .......... .......... .......... .......... .......... .......... 555 AAAAATTGAA CCAAATGAAT CATTTCCTAC TTATTCTTAA TATACTTAAA TTAGTTATCT 26614 .......... .......... .......... .......... .......... .......... 555 TCCATTATAA CATATACAAT TCATTCATTA TTCGTAACTA TCCTTTGTAA ATATAGGTGC 26554 .......... .......... .......... .......... .......... .......... 555 ATCGTATGTT TAATATATGG ATGAAATATT AATGAAGATG TATAAATTTT ATACGAGAGT 26494 .......... .......... .......... .......... .......... .......... 555 TATACCATTA AAATTAAAAT TTATAATGCT TGGTATAAAA TTATACCAAG AAAAATGTTT 26434 .......... .......... .......... .......... .......... .......... 555 TGCATGAATA TCATCTTAAA CAAAACAACA CACAAATATG CAATTCGAAT GTGCATAGAA 26374 .......... .......... .......... .......... .......... .......... 555 CCAAATATCC CATAAATTTA AGGTCAATGA GCTAGAGTTC ACCCAGGCAA GCAGCCTTAT 26314 .......... .......... .......... .......... .......... .......... 555 TTCCCCCCCC AAATTTAGGC CTTATTTTTT TTCTTTAAGA TTAACATGTC TGAATTTGAA 26254 .......... .......... .......... .......... .......... .......... 555 TAAACATTTG AATAATTTTG TGTCTAAGTT TAAACATTAA ATGATTAATA TTATTTATTT 26194 .......... .......... .......... .......... .......... .......... 555 TTTATCATCT GAATATGAGT AATTATTTAT AATTAAACAT TATAAATATA TAATTTAAAA 26134 .......... .......... .......... .......... .......... .......... 555 TAAGAAAGTA ATTAACCATC GTTTTTTTTT TTCTCAAAGC ATATTTAAAA AGAGGAGGTT 26074 .......... .......... .......... .......... .......... .......... 555 GTTCGATTTT GTAACTACAC AATTAAGAAT AAAACGGTAC TTGCCGATGA TAAAATATCT 26014 .......... .......... .......... .......... .......... .......... 555 ACTTTGAATG CTCTTCTTTC AAAAATTAGT GTGTATAATG AATTTTTTTT AAAAAAAAGA 25954 .......... .......... .......... .......... .......... .......... 555 TATATTTACA TTAGATATGA TGCAGTTAAA CAGTTATTGA AACATGAGGT TATTTTCTTA 25894 .......... .......... .......... .......... .......... .......... 555 GAATGTGTAA GGTCCTAAAA GTTATTTGTA ATCTTTTAAC TAAGGAATTT GACTTGAAAA 25834 .......... .......... .......... .......... .......... .......... 555 TGAATAAATG GTCTTTACCT CGAAGGAGAT GAAACGGGAT GGTGCTAAAG CCCATTGATT 25774 .......... .......... .......... .......... .......... .......... 555 GAGATAATAT GACACAAGGC CATATTTTTT GATGCAGATA GTAGGGGCGA TTCAACTCTA 25714 .......... .......... .......... .......... .......... .......... 555 AAGCCACTAA AGTAATGACT TTAGGCTTCC AAAATATAAC GCCTCAAATT TATTTAATGT 25654 .......... .......... .......... .......... .......... .......... 555 TACAGATATA CAAATATAAA TATACTTATA ATTATGTATC TATAATTAGT ATTAATTGAA 25594 .......... .......... .......... .......... .......... .......... 555 ATTTTCTTAA TAGTTTCTAA TCATGGGCGA ATCCACATGT AAAGGTGGGG TGTACGTCCA 25534 .......... .......... .......... .......... .......... .......... 555 CTCGTTAACT TCGAAAAATC ATGTATAAAT ATATATATAT TGAGAAACTG ATAAGGAAAA 25474 .......... .......... .......... .......... .......... .......... 555 AAAATATAAT AAAAAATGCA ACCTTAATGA ACATTGAACT GGTCTTGATT TGCTGATAGA 25414 .......... .......... .......... .......... .......... .......... 555 AATAAGAAAA TACCTCCTTG CAGACCTAGA TTTCAATCCT GATCAATAAG TCACTATCCT 25354 .......... .......... .......... .......... .......... .......... 555 ATTCAAATCT TGGCTTCGCC TATATTTTGT GTTAAATTTG AACACTAAGA GCCTGTTTGG 25294 .......... .......... .......... .......... .......... .......... 555 CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT TTAGTTGTTT 25234 .......... .......... .......... .......... .......... .......... 555 GGCAATACTC AAAATAACTT ACTTTAAGTT AAAAAAAACT TATTTTAAGC CAAAAGTTAA 25174 .......... .......... .......... .......... .......... .......... 555 AAACTGGGGT AGGGGTGTTT TTTTTTTTTA GCTTATAAGC TGTTTTAAGT TGACCACATT 25114 .......... .......... .......... .......... .......... .......... 555 TTTATCTTTT TGCCATTAAT ATTTTTATGC AATCTCCAAA TTACTCATAT AACTCTAACA 25054 .......... .......... .......... .......... .......... .......... 555 TCTCTTTCTT CCATTTTTCC CTTTTCACGT TTGATATAAC AACTTCAGCA CTTTTATCCA 24994 .......... .......... .......... .......... .......... .......... 555 AACGCATAAC TGCTTATTTT AAAAATAAAT TTCAACACTT CTAAAAGTAA TTTTTTAAAG 24934 .......... .......... .......... .......... .......... .......... 555 CTGCTTTTAT TAAGCCCATC CAAACGGATC CTAAGTCCGT ATTGTTGATT TAACCAAGAT 24874 .......... .......... .......... .......... .......... .......... 555 TGTGCCACCC TCTTAATACA ACCAAAGAGA GAAAAAAGAT AACCTGGTCG GCCCAAAAGT 24814 .......... .......... .......... .......... .......... .......... 555 GACCAGACCA GGTCAATCAT TATACATATA TTTTTGAAAT TTACTATTTT CTAAAAGTAC 24754 .......... .......... .......... .......... .......... .......... 555 AATATAATTA AAAAACGTAT ACAATTTATC AGTTGTTATT TTCTTAATTT GTCTAATTCT 24694 .......... .......... .......... .......... .......... .......... 555 CTTTAATTTG AAAGGGCAAC TTTCACATAT AGGAAATAAA ATATTTATAT TTGTATGCTA 24634 .......... .......... .......... .......... .......... .......... 555 TAGCAAATTT TGTATAATTG CGCTCCATAG CAAACATAAA ACTGTATAAT TCGCTATACA 24574 .......... .......... .......... .......... .......... .......... 555 TATACAAGTG TATAGTTCGC TGGCCTAAAT TGTATAATTC GCTGGCCTAT TTCGCTGCAA 24514 .......... .......... .......... .......... .......... .......... 555 TAGTATAATT CGTTATCCTA TTTCACTGCA ATTGTATAAT GCACGATTAT ATAATTAACT 24454 .......... .......... .......... .......... .......... .......... 555 GCCTATTTCG CTGCAATATT AAGTGTATAG CAAGAAGATA TATGTTTTTC TCTCGCTTTA 24394 .......... .......... .......... .......... .......... .......... 555 TACAAAAACA GAAACACAAT ATACACACTT CTGTTGTATA AAGCTAGAGA AAATTGTATT 24334 .......... .......... .......... .......... .......... .......... 555 TTACTGCAAT TGTATAATTC ACAATTGTAT AATTCTTTGA CCTTTTTCTC TGCAATATTT 24274 .......... .......... .......... .......... .......... .......... 555 GAAGTAAAAT GTTTGTAAAT TGTATAATTA AGTGTATAAC ACGAAGATAT AGATTTTTGC 24214 .......... .......... .......... .......... .......... .......... 555 ATGTGTATAT ACAATTTTCT CTCGCTTTAT ACAAAACAGA AACATAATTA TACACTTCTG 24154 .......... .......... .......... .......... .......... .......... 555 TGTATAAAGC GAGAGAGGCG AGCGAGAATG GAGAGTGGCG AGCGAGATTT CTGGGAGAGA 24094 .......... .......... .......... .......... .......... .......... 555 GGCGCTGGCA AATTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA ACCCTAACTA 24034 .......... .......... .......... .......... .......... .......... 555 TTCCATTTAT TTTAGGTTGT TAGTTTGCTA TTATATACAA TTTTCCCAAT TTGAAATCAA 23974 .......... .......... .......... .......... .......... .......... 555 TAATGTTTGA GTATTGATTC TATAAGAATA TCTTCAATTA TTTGGTATCT TCTTAGATAT 23914 .......... .......... .......... .......... .......... .......... 555 TTCAAGCTTA AACTAATTAA ATTTATCGAA TAATTAAATT TTAAAAGACG TAATCTTAAC 23854 .......... .......... .......... .......... .......... .......... 555 TTTAAATGTG ATCTAAAGTG TAACGATCAC TTCTTTCGAG TTTTTGGCCA AAATCATTTT 23794 .......... .......... .......... .......... .......... .......... 555 TAAACTATAC CTCAGACTCA AACTACATCC TTAAAGTATC ATTCTTACCA TGAAACATCC 23734 .......... .......... .......... .......... .......... .......... 555 TTAAAGTATT TTAAAGTTAA TAATTTTCAT CCTTCTACTT GAATTTATCA TAAAACTAAT 23674 .......... .......... .......... .......... .......... .......... 555 TGATATATCC TACAAAATTT AAGTTGTCCC TTCCTAATTA TTATTCTTA 23625 ||| | ||| | || | | ||| || ||||| ||| .......... .......TTT ATGTTCTTCC TACTTAAATA TTATTATTA 587 hqPGS_C04HBa0077O05.1-_SGN-E377133+ (27569 27014,23656 23625) ******************************************************************************** EST sequence 15 -strand 679 n (File: SGN-E550127-) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTCCT TTTCTTTTTC TTATCAAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTGCACAA CCATGAATTA ATGAAAAAAT TATGACATAA 661 AATATAAAAA ATTACTCAT Predicted gene structure (within gDNA segment 28674 to 22490): Exon 1 27569 27014 ( 556 n); cDNA 2 556 ( 555 n); score: 0.874 Intron 1 27013 23657 (3357 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 23656 23625 ( 32 n); cDNA 557 588 ( 32 n); score: 0.781 MATCH C04HBa0077O05.1- SGN-E550127- 0.874 588 0.866 C PGS_C04HBa0077O05.1-_SGN-E550127- (27569 27014,23656 23625) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||| ||| | |||||| | || |||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTCCTT TTCTTTTTCT T-ATCAAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGAT-TTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| |||| || || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 417 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACA GGTCGTTACA ATAAATATTA GGTATAATAG ATAAATTTAT CATTTTACCT 26974 |||||||||| |||||||||| CGACTAAACA GGTCGTTACA .......... .......... .......... .......... 556 GATCTTATTT CACATGTATG TCATCTATTT TTAGGTGTGT ATAAATAGAT ATTTAAATTA 26914 .......... .......... .......... .......... .......... .......... 556 AATTTGTATA AAGTTGAAGT AGACACTGAA TTCTACGAGA CATAATACAA GTAAGAGATC 26854 .......... .......... .......... .......... .......... .......... 556 TAGGACGCAA ATTGTCATGT AAGATGACAC GCAAAAATGT GTGTATTTAT TTATTCAACG 26794 .......... .......... .......... .......... .......... .......... 556 AATTTATAGA AATATAAGTA TCTACTCGTG CACACTCAAA AATAAAGAAT ATAAATATAA 26734 .......... .......... .......... .......... .......... .......... 556 GTGATAAGAG CATATTTATA TATTATGTCT AACTATTAAT TTGATGTCCG TTGATCACAT 26674 .......... .......... .......... .......... .......... .......... 556 AAAAATTGAA CCAAATGAAT CATTTCCTAC TTATTCTTAA TATACTTAAA TTAGTTATCT 26614 .......... .......... .......... .......... .......... .......... 556 TCCATTATAA CATATACAAT TCATTCATTA TTCGTAACTA TCCTTTGTAA ATATAGGTGC 26554 .......... .......... .......... .......... .......... .......... 556 ATCGTATGTT TAATATATGG ATGAAATATT AATGAAGATG TATAAATTTT ATACGAGAGT 26494 .......... .......... .......... .......... .......... .......... 556 TATACCATTA AAATTAAAAT TTATAATGCT TGGTATAAAA TTATACCAAG AAAAATGTTT 26434 .......... .......... .......... .......... .......... .......... 556 TGCATGAATA TCATCTTAAA CAAAACAACA CACAAATATG CAATTCGAAT GTGCATAGAA 26374 .......... .......... .......... .......... .......... .......... 556 CCAAATATCC CATAAATTTA AGGTCAATGA GCTAGAGTTC ACCCAGGCAA GCAGCCTTAT 26314 .......... .......... .......... .......... .......... .......... 556 TTCCCCCCCC AAATTTAGGC CTTATTTTTT TTCTTTAAGA TTAACATGTC TGAATTTGAA 26254 .......... .......... .......... .......... .......... .......... 556 TAAACATTTG AATAATTTTG TGTCTAAGTT TAAACATTAA ATGATTAATA TTATTTATTT 26194 .......... .......... .......... .......... .......... .......... 556 TTTATCATCT GAATATGAGT AATTATTTAT AATTAAACAT TATAAATATA TAATTTAAAA 26134 .......... .......... .......... .......... .......... .......... 556 TAAGAAAGTA ATTAACCATC GTTTTTTTTT TTCTCAAAGC ATATTTAAAA AGAGGAGGTT 26074 .......... .......... .......... .......... .......... .......... 556 GTTCGATTTT GTAACTACAC AATTAAGAAT AAAACGGTAC TTGCCGATGA TAAAATATCT 26014 .......... .......... .......... .......... .......... .......... 556 ACTTTGAATG CTCTTCTTTC AAAAATTAGT GTGTATAATG AATTTTTTTT AAAAAAAAGA 25954 .......... .......... .......... .......... .......... .......... 556 TATATTTACA TTAGATATGA TGCAGTTAAA CAGTTATTGA AACATGAGGT TATTTTCTTA 25894 .......... .......... .......... .......... .......... .......... 556 GAATGTGTAA GGTCCTAAAA GTTATTTGTA ATCTTTTAAC TAAGGAATTT GACTTGAAAA 25834 .......... .......... .......... .......... .......... .......... 556 TGAATAAATG GTCTTTACCT CGAAGGAGAT GAAACGGGAT GGTGCTAAAG CCCATTGATT 25774 .......... .......... .......... .......... .......... .......... 556 GAGATAATAT GACACAAGGC CATATTTTTT GATGCAGATA GTAGGGGCGA TTCAACTCTA 25714 .......... .......... .......... .......... .......... .......... 556 AAGCCACTAA AGTAATGACT TTAGGCTTCC AAAATATAAC GCCTCAAATT TATTTAATGT 25654 .......... .......... .......... .......... .......... .......... 556 TACAGATATA CAAATATAAA TATACTTATA ATTATGTATC TATAATTAGT ATTAATTGAA 25594 .......... .......... .......... .......... .......... .......... 556 ATTTTCTTAA TAGTTTCTAA TCATGGGCGA ATCCACATGT AAAGGTGGGG TGTACGTCCA 25534 .......... .......... .......... .......... .......... .......... 556 CTCGTTAACT TCGAAAAATC ATGTATAAAT ATATATATAT TGAGAAACTG ATAAGGAAAA 25474 .......... .......... .......... .......... .......... .......... 556 AAAATATAAT AAAAAATGCA ACCTTAATGA ACATTGAACT GGTCTTGATT TGCTGATAGA 25414 .......... .......... .......... .......... .......... .......... 556 AATAAGAAAA TACCTCCTTG CAGACCTAGA TTTCAATCCT GATCAATAAG TCACTATCCT 25354 .......... .......... .......... .......... .......... .......... 556 ATTCAAATCT TGGCTTCGCC TATATTTTGT GTTAAATTTG AACACTAAGA GCCTGTTTGG 25294 .......... .......... .......... .......... .......... .......... 556 CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT TTAGTTGTTT 25234 .......... .......... .......... .......... .......... .......... 556 GGCAATACTC AAAATAACTT ACTTTAAGTT AAAAAAAACT TATTTTAAGC CAAAAGTTAA 25174 .......... .......... .......... .......... .......... .......... 556 AAACTGGGGT AGGGGTGTTT TTTTTTTTTA GCTTATAAGC TGTTTTAAGT TGACCACATT 25114 .......... .......... .......... .......... .......... .......... 556 TTTATCTTTT TGCCATTAAT ATTTTTATGC AATCTCCAAA TTACTCATAT AACTCTAACA 25054 .......... .......... .......... .......... .......... .......... 556 TCTCTTTCTT CCATTTTTCC CTTTTCACGT TTGATATAAC AACTTCAGCA CTTTTATCCA 24994 .......... .......... .......... .......... .......... .......... 556 AACGCATAAC TGCTTATTTT AAAAATAAAT TTCAACACTT CTAAAAGTAA TTTTTTAAAG 24934 .......... .......... .......... .......... .......... .......... 556 CTGCTTTTAT TAAGCCCATC CAAACGGATC CTAAGTCCGT ATTGTTGATT TAACCAAGAT 24874 .......... .......... .......... .......... .......... .......... 556 TGTGCCACCC TCTTAATACA ACCAAAGAGA GAAAAAAGAT AACCTGGTCG GCCCAAAAGT 24814 .......... .......... .......... .......... .......... .......... 556 GACCAGACCA GGTCAATCAT TATACATATA TTTTTGAAAT TTACTATTTT CTAAAAGTAC 24754 .......... .......... .......... .......... .......... .......... 556 AATATAATTA AAAAACGTAT ACAATTTATC AGTTGTTATT TTCTTAATTT GTCTAATTCT 24694 .......... .......... .......... .......... .......... .......... 556 CTTTAATTTG AAAGGGCAAC TTTCACATAT AGGAAATAAA ATATTTATAT TTGTATGCTA 24634 .......... .......... .......... .......... .......... .......... 556 TAGCAAATTT TGTATAATTG CGCTCCATAG CAAACATAAA ACTGTATAAT TCGCTATACA 24574 .......... .......... .......... .......... .......... .......... 556 TATACAAGTG TATAGTTCGC TGGCCTAAAT TGTATAATTC GCTGGCCTAT TTCGCTGCAA 24514 .......... .......... .......... .......... .......... .......... 556 TAGTATAATT CGTTATCCTA TTTCACTGCA ATTGTATAAT GCACGATTAT ATAATTAACT 24454 .......... .......... .......... .......... .......... .......... 556 GCCTATTTCG CTGCAATATT AAGTGTATAG CAAGAAGATA TATGTTTTTC TCTCGCTTTA 24394 .......... .......... .......... .......... .......... .......... 556 TACAAAAACA GAAACACAAT ATACACACTT CTGTTGTATA AAGCTAGAGA AAATTGTATT 24334 .......... .......... .......... .......... .......... .......... 556 TTACTGCAAT TGTATAATTC ACAATTGTAT AATTCTTTGA CCTTTTTCTC TGCAATATTT 24274 .......... .......... .......... .......... .......... .......... 556 GAAGTAAAAT GTTTGTAAAT TGTATAATTA AGTGTATAAC ACGAAGATAT AGATTTTTGC 24214 .......... .......... .......... .......... .......... .......... 556 ATGTGTATAT ACAATTTTCT CTCGCTTTAT ACAAAACAGA AACATAATTA TACACTTCTG 24154 .......... .......... .......... .......... .......... .......... 556 TGTATAAAGC GAGAGAGGCG AGCGAGAATG GAGAGTGGCG AGCGAGATTT CTGGGAGAGA 24094 .......... .......... .......... .......... .......... .......... 556 GGCGCTGGCA AATTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA ACCCTAACTA 24034 .......... .......... .......... .......... .......... .......... 556 TTCCATTTAT TTTAGGTTGT TAGTTTGCTA TTATATACAA TTTTCCCAAT TTGAAATCAA 23974 .......... .......... .......... .......... .......... .......... 556 TAATGTTTGA GTATTGATTC TATAAGAATA TCTTCAATTA TTTGGTATCT TCTTAGATAT 23914 .......... .......... .......... .......... .......... .......... 556 TTCAAGCTTA AACTAATTAA ATTTATCGAA TAATTAAATT TTAAAAGACG TAATCTTAAC 23854 .......... .......... .......... .......... .......... .......... 556 TTTAAATGTG ATCTAAAGTG TAACGATCAC TTCTTTCGAG TTTTTGGCCA AAATCATTTT 23794 .......... .......... .......... .......... .......... .......... 556 TAAACTATAC CTCAGACTCA AACTACATCC TTAAAGTATC ATTCTTACCA TGAAACATCC 23734 .......... .......... .......... .......... .......... .......... 556 TTAAAGTATT TTAAAGTTAA TAATTTTCAT CCTTCTACTT GAATTTATCA TAAAACTAAT 23674 .......... .......... .......... .......... .......... .......... 556 TGATATATCC TACAAAATTT AAGTTGTCCC TTCCTAATTA TTATTCTTA 23625 ||| | ||| | || | | ||| || ||||| ||| .......... .......TTT ATGTTCTTCC TACTTAAATA TTATTATTA 588 hqPGS_C04HBa0077O05.1-_SGN-E550127- (27569 27014,23656 23625) ******************************************************************************** EST sequence 94 -strand 674 n (File: SGN-E396057-) 1 TTTTTTATTC AAACCTTCTT TTTTTTACCC TAATTAGCAT ATAATTAAGA ATAAAAGATG 61 GAATAATAAC CCACTAATTT ACTCAAGGTT ACCTCTTTTA ACCCCCAGGT AATTAGACTT 121 ATTAACATAA ACCCACTAAC TTTATAATTA AAGTAGGAAT AGTCCAAAAC GTCCCTTAAA 181 ACGTGTAAAG AAATCCGACC CAGACTGGGA TTACGCAACC TGTGATGGCC CGTCGTGCCT 241 GCGACGGTCC GTCCTGCAGG TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC 301 TGTGACGGTC CGTCACGCCC GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA 361 GTCGATTTTT AGTACCCAAT TTCAGAATTT TTAAGTGTTT TGAAACGAGA CTCCTCGACG 421 GTCCATCGTG CTCATGACGG TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA 481 ATAAAATCTG CTACTCAAAA CGACTAAACA GGTCGTTACA TTTATGTTCT TCCTACTTAA 541 ATATTATTAT TATTTTACGA TTTATAACAC TATTAGAAAC AAAGATTTTC TCAACCATGA 601 ATTAATGAAA AAATTATGCC ATAAAATATA AAAAATTTAC TCATTTTTCA TTGAGCTAAT 661 TCATAAAAAA AAAA Predicted gene structure (within gDNA segment 28341 to 22780): Exon 1 27533 27014 ( 520 n); cDNA 1 520 ( 520 n); score: 0.888 Intron 1 27013 23657 (3357 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 23656 23625 ( 32 n); cDNA 521 552 ( 32 n); score: 0.781 PPA cDNA 663 674 MATCH C04HBa0077O05.1- SGN-E396057- 0.888 552 0.819 C PGS_C04HBa0077O05.1-_SGN-E396057- (27533 27014,23656 23625) Alignment (genomic DNA sequence = upper lines): TTCTTTATTC AAACCCTCTT TCTTTTACCC TAATTAGCAT ATAATTAAGA ATAAAAGATG 27474 || ||||||| ||||| |||| | |||||||| |||||||||| |||||||||| |||||||||| TTTTTTATTC AAACCTTCTT TTTTTTACCC TAATTAGCAT ATAATTAAGA ATAAAAGATG 60 GCAATAATAA CCCACTAATT TACTCAAGGT TACCTCTTTT AACCCCCAAG TAATTAGACT 27414 | |||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| G-AATAATAA CCCACTAATT TACTCAAGGT TACCTCTTTT AACCCCCAGG TAATTAGACT 119 TATTAACATT AACCCACTAA CTTTATAATT AAAACAGGAA TAGTCAAAAA CTTCCTTTAA 27354 ||||||||| |||||||||| |||||||||| ||| ||||| ||||| |||| | ||| |||| TATTAACATA AACCCACTAA CTTTATAATT AAAGTAGGAA TAGTCCAAAA CGTCCCTTAA 179 AACAT-TAAA GAAATCCGAC TCAGCCTGGG ATTACGCAGC CTGTGACGGC CTGTCATGCC 27295 ||| | |||| |||||||||| ||| ||||| |||||||| | |||||| ||| | ||| |||| AACGTGTAAA GAAATCCGAC CCAGACTGGG ATTACGCAAC CTGTGATGGC CCGTCGTGCC 239 TGCGACGGTC CGTCCTGCTG CTCCGTCACA GAGTTCAGAG ACTCAA-TTC CCTTAAAGAG 27236 |||||||||| |||||||| | | |||| || |||||||| |||||| ||| | |||||| TGCGACGGTC CGTCCTGCAG GT-CGTCGCA AGGTTCAGAG ACTCAATTTC CACCAAAGAG 298 TCTGTGACGG TCCGTCACGC CTGTGACGGT CCGTCCTGCC ATTCCGTTAC GAAGTTTAGA 27176 |||||||||| |||||||||| | |||||||| ||||| |||| |||||||||| |||||| ||| TCTGTGACGG TCCGTCACGC CCGTGACGGT CCGTCGTGCC ATTCCGTTAC GAAGTTCAGA 358 GAGTCGA-TT TCAGTACCCA TTTTTCAGAA TTTCAAAGTG TTTTGAAACG AGACCCCCTC 27117 ||||||| || | |||||||| |||||||| ||| ||||| |||||||||| ||| | |||| GAGTCGATTT TTAGTACCCA -ATTTCAGAA TTTTTAAGTG TTTTGAAACG AGA-CTCCTC 416 GACGGTCCGT CGTGCCCATG ACGGTCCGTC GTGGAATCCG TCGTCTCAGC CAG-TTTTCC 27058 |||||||| | ||||| |||| |||||||||| |||| |||| |||||||| | | | |||||| GACGGTCCAT CGTGCTCATG ACGGTCCGTC GTGGGTTCCG TCGTCTCAAC CTGTTTTTCC 476 AGAAATAACA TCTCTTGCTC AAAACGACTA AACAGGTCGT TACAATAAAT ATTAGGTATA 26998 | |||||| | ||| | ||| |||||||||| |||||||||| |||| AAAAATAAAA TCTGCTACTC AAAACGACTA AACAGGTCGT TACA...... .......... 520 ATAGATAAAT TTATCATTTT ACCTGATCTT ATTTCACATG TATGTCATCT ATTTTTAGGT 26938 .......... .......... .......... .......... .......... .......... 520 GTGTATAAAT AGATATTTAA ATTAAATTTG TATAAAGTTG AAGTAGACAC TGAATTCTAC 26878 .......... .......... .......... .......... .......... .......... 520 GAGACATAAT ACAAGTAAGA GATCTAGGAC GCAAATTGTC ATGTAAGATG ACACGCAAAA 26818 .......... .......... .......... .......... .......... .......... 520 ATGTGTGTAT TTATTTATTC AACGAATTTA TAGAAATATA AGTATCTACT CGTGCACACT 26758 .......... .......... .......... .......... .......... .......... 520 CAAAAATAAA GAATATAAAT ATAAGTGATA AGAGCATATT TATATATTAT GTCTAACTAT 26698 .......... .......... .......... .......... .......... .......... 520 TAATTTGATG TCCGTTGATC ACATAAAAAT TGAACCAAAT GAATCATTTC CTACTTATTC 26638 .......... .......... .......... .......... .......... .......... 520 TTAATATACT TAAATTAGTT ATCTTCCATT ATAACATATA CAATTCATTC ATTATTCGTA 26578 .......... .......... .......... .......... .......... .......... 520 ACTATCCTTT GTAAATATAG GTGCATCGTA TGTTTAATAT ATGGATGAAA TATTAATGAA 26518 .......... .......... .......... .......... .......... .......... 520 GATGTATAAA TTTTATACGA GAGTTATACC ATTAAAATTA AAATTTATAA TGCTTGGTAT 26458 .......... .......... .......... .......... .......... .......... 520 AAAATTATAC CAAGAAAAAT GTTTTGCATG AATATCATCT TAAACAAAAC AACACACAAA 26398 .......... .......... .......... .......... .......... .......... 520 TATGCAATTC GAATGTGCAT AGAACCAAAT ATCCCATAAA TTTAAGGTCA ATGAGCTAGA 26338 .......... .......... .......... .......... .......... .......... 520 GTTCACCCAG GCAAGCAGCC TTATTTCCCC CCCCAAATTT AGGCCTTATT TTTTTTCTTT 26278 .......... .......... .......... .......... .......... .......... 520 AAGATTAACA TGTCTGAATT TGAATAAACA TTTGAATAAT TTTGTGTCTA AGTTTAAACA 26218 .......... .......... .......... .......... .......... .......... 520 TTAAATGATT AATATTATTT ATTTTTTATC ATCTGAATAT GAGTAATTAT TTATAATTAA 26158 .......... .......... .......... .......... .......... .......... 520 ACATTATAAA TATATAATTT AAAATAAGAA AGTAATTAAC CATCGTTTTT TTTTTTCTCA 26098 .......... .......... .......... .......... .......... .......... 520 AAGCATATTT AAAAAGAGGA GGTTGTTCGA TTTTGTAACT ACACAATTAA GAATAAAACG 26038 .......... .......... .......... .......... .......... .......... 520 GTACTTGCCG ATGATAAAAT ATCTACTTTG AATGCTCTTC TTTCAAAAAT TAGTGTGTAT 25978 .......... .......... .......... .......... .......... .......... 520 AATGAATTTT TTTTAAAAAA AAGATATATT TACATTAGAT ATGATGCAGT TAAACAGTTA 25918 .......... .......... .......... .......... .......... .......... 520 TTGAAACATG AGGTTATTTT CTTAGAATGT GTAAGGTCCT AAAAGTTATT TGTAATCTTT 25858 .......... .......... .......... .......... .......... .......... 520 TAACTAAGGA ATTTGACTTG AAAATGAATA AATGGTCTTT ACCTCGAAGG AGATGAAACG 25798 .......... .......... .......... .......... .......... .......... 520 GGATGGTGCT AAAGCCCATT GATTGAGATA ATATGACACA AGGCCATATT TTTTGATGCA 25738 .......... .......... .......... .......... .......... .......... 520 GATAGTAGGG GCGATTCAAC TCTAAAGCCA CTAAAGTAAT GACTTTAGGC TTCCAAAATA 25678 .......... .......... .......... .......... .......... .......... 520 TAACGCCTCA AATTTATTTA ATGTTACAGA TATACAAATA TAAATATACT TATAATTATG 25618 .......... .......... .......... .......... .......... .......... 520 TATCTATAAT TAGTATTAAT TGAAATTTTC TTAATAGTTT CTAATCATGG GCGAATCCAC 25558 .......... .......... .......... .......... .......... .......... 520 ATGTAAAGGT GGGGTGTACG TCCACTCGTT AACTTCGAAA AATCATGTAT AAATATATAT 25498 .......... .......... .......... .......... .......... .......... 520 ATATTGAGAA ACTGATAAGG AAAAAAAATA TAATAAAAAA TGCAACCTTA ATGAACATTG 25438 .......... .......... .......... .......... .......... .......... 520 AACTGGTCTT GATTTGCTGA TAGAAATAAG AAAATACCTC CTTGCAGACC TAGATTTCAA 25378 .......... .......... .......... .......... .......... .......... 520 TCCTGATCAA TAAGTCACTA TCCTATTCAA ATCTTGGCTT CGCCTATATT TTGTGTTAAA 25318 .......... .......... .......... .......... .......... .......... 520 TTTGAACACT AAGAGCCTGT TTGGCTCAGC TTAAAAGCTG GTCAAACTGA CTTAAAAGCT 25258 .......... .......... .......... .......... .......... .......... 520 GGTTTTTGAC TTATTTAGTT GTTTGGCAAT ACTCAAAATA ACTTACTTTA AGTTAAAAAA 25198 .......... .......... .......... .......... .......... .......... 520 AACTTATTTT AAGCCAAAAG TTAAAAACTG GGGTAGGGGT GTTTTTTTTT TTTAGCTTAT 25138 .......... .......... .......... .......... .......... .......... 520 AAGCTGTTTT AAGTTGACCA CATTTTTATC TTTTTGCCAT TAATATTTTT ATGCAATCTC 25078 .......... .......... .......... .......... .......... .......... 520 CAAATTACTC ATATAACTCT AACATCTCTT TCTTCCATTT TTCCCTTTTC ACGTTTGATA 25018 .......... .......... .......... .......... .......... .......... 520 TAACAACTTC AGCACTTTTA TCCAAACGCA TAACTGCTTA TTTTAAAAAT AAATTTCAAC 24958 .......... .......... .......... .......... .......... .......... 520 ACTTCTAAAA GTAATTTTTT AAAGCTGCTT TTATTAAGCC CATCCAAACG GATCCTAAGT 24898 .......... .......... .......... .......... .......... .......... 520 CCGTATTGTT GATTTAACCA AGATTGTGCC ACCCTCTTAA TACAACCAAA GAGAGAAAAA 24838 .......... .......... .......... .......... .......... .......... 520 AGATAACCTG GTCGGCCCAA AAGTGACCAG ACCAGGTCAA TCATTATACA TATATTTTTG 24778 .......... .......... .......... .......... .......... .......... 520 AAATTTACTA TTTTCTAAAA GTACAATATA ATTAAAAAAC GTATACAATT TATCAGTTGT 24718 .......... .......... .......... .......... .......... .......... 520 TATTTTCTTA ATTTGTCTAA TTCTCTTTAA TTTGAAAGGG CAACTTTCAC ATATAGGAAA 24658 .......... .......... .......... .......... .......... .......... 520 TAAAATATTT ATATTTGTAT GCTATAGCAA ATTTTGTATA ATTGCGCTCC ATAGCAAACA 24598 .......... .......... .......... .......... .......... .......... 520 TAAAACTGTA TAATTCGCTA TACATATACA AGTGTATAGT TCGCTGGCCT AAATTGTATA 24538 .......... .......... .......... .......... .......... .......... 520 ATTCGCTGGC CTATTTCGCT GCAATAGTAT AATTCGTTAT CCTATTTCAC TGCAATTGTA 24478 .......... .......... .......... .......... .......... .......... 520 TAATGCACGA TTATATAATT AACTGCCTAT TTCGCTGCAA TATTAAGTGT ATAGCAAGAA 24418 .......... .......... .......... .......... .......... .......... 520 GATATATGTT TTTCTCTCGC TTTATACAAA AACAGAAACA CAATATACAC ACTTCTGTTG 24358 .......... .......... .......... .......... .......... .......... 520 TATAAAGCTA GAGAAAATTG TATTTTACTG CAATTGTATA ATTCACAATT GTATAATTCT 24298 .......... .......... .......... .......... .......... .......... 520 TTGACCTTTT TCTCTGCAAT ATTTGAAGTA AAATGTTTGT AAATTGTATA ATTAAGTGTA 24238 .......... .......... .......... .......... .......... .......... 520 TAACACGAAG ATATAGATTT TTGCATGTGT ATATACAATT TTCTCTCGCT TTATACAAAA 24178 .......... .......... .......... .......... .......... .......... 520 CAGAAACATA ATTATACACT TCTGTGTATA AAGCGAGAGA GGCGAGCGAG AATGGAGAGT 24118 .......... .......... .......... .......... .......... .......... 520 GGCGAGCGAG ATTTCTGGGA GAGAGGCGCT GGCAAATTTT AGCTAACGTT TGCTATGGAG 24058 .......... .......... .......... .......... .......... .......... 520 CACAATTAAA TCAAACCCTA ACTATTCCAT TTATTTTAGG TTGTTAGTTT GCTATTATAT 23998 .......... .......... .......... .......... .......... .......... 520 ACAATTTTCC CAATTTGAAA TCAATAATGT TTGAGTATTG ATTCTATAAG AATATCTTCA 23938 .......... .......... .......... .......... .......... .......... 520 ATTATTTGGT ATCTTCTTAG ATATTTCAAG CTTAAACTAA TTAAATTTAT CGAATAATTA 23878 .......... .......... .......... .......... .......... .......... 520 AATTTTAAAA GACGTAATCT TAACTTTAAA TGTGATCTAA AGTGTAACGA TCACTTCTTT 23818 .......... .......... .......... .......... .......... .......... 520 CGAGTTTTTG GCCAAAATCA TTTTTAAACT ATACCTCAGA CTCAAACTAC ATCCTTAAAG 23758 .......... .......... .......... .......... .......... .......... 520 TATCATTCTT ACCATGAAAC ATCCTTAAAG TATTTTAAAG TTAATAATTT TCATCCTTCT 23698 .......... .......... .......... .......... .......... .......... 520 ACTTGAATTT ATCATAAAAC TAATTGATAT ATCCTACAAA ATTTAAGTTG TCCCTTCCTA 23638 |||| ||| | ||| | || .......... .......... .......... .......... .TTTATGTTC TTCCTACTTA 539 ATTATTATTC TTA 23625 | ||||||| ||| AATATTATTA TTA 552 hqPGS_C04HBa0077O05.1-_SGN-E396057- (27533 27014,23656 23625) ******************************************************************************** EST sequence 109 -strand 658 n (File: SGN-E377132-) 1 TTCCTTCTTT TACCCTAATT AGCATATATT TAAGAATAAA AGATGGAATA ATAACCCACT 61 AATTTACTCA AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA 121 CTAACTTTAT AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC 181 CGACCCAGAC TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT 241 GCAGGTCGTC GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA 301 CGCCCGTGAC GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC 361 CCAATTTCAG AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT 421 GACGGTCCGT CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT 481 CAAAACGACT AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT 541 TACGATTTAT AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT 601 ATGCCATAAA ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAA Predicted gene structure (within gDNA segment 28164 to 22790): Exon 1 27517 27014 ( 504 n); cDNA 2 505 ( 504 n); score: 0.889 Intron 1 27013 23657 (3357 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 23656 23625 ( 32 n); cDNA 506 537 ( 32 n); score: 0.781 PPA cDNA 648 658 MATCH C04HBa0077O05.1- SGN-E377132- 0.889 536 0.815 C PGS_C04HBa0077O05.1-_SGN-E377132- (27517 27014,23656 23625) Alignment (genomic DNA sequence = upper lines): TCTTTCTTTT ACCCTAATTA GCATATAATT AAGAATAAAA GATGGCAATA ATAACCCACT 27458 || ||||||| |||||||||| ||||||| || |||||||||| ||||| |||| |||||||||| TCCTTCTTTT ACCCTAATTA GCATATATTT AAGAATAAAA GATGG-AATA ATAACCCACT 60 AATTTACTCA AGGTTACCTC TTTTAACCCC CAAGTAATTA GACTTATTAA CATTAACCCA 27398 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| ||| |||||| AATTTACTCA AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA 120 CTAACTTTAT AATTAAAACA GGAATAGTCA AAAACTTCCT TTAAAACAT- TAAAGAAATC 27339 |||||||||| ||||||| | ||||||||| ||||| ||| ||||||| | |||||||||| CTAACTTTAT AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC 180 CGACTCAGCC TGGGATTACG CAGCCTGTGA CGGCCTGTCA TGCCTGCGAC GGTCCGTCCT 27279 |||| ||| | |||||||||| || ||||||| |||| ||| |||||||||| |||||||||| CGACCCAGAC TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT 240 GCTGCTCCGT CACAGAGTTC AGAGACTCAA -TTCCCTTAA AGAGTCTGTG ACGGTCCGTC 27220 || | | ||| | || |||| |||||||||| |||| || |||||||||| |||||||||| GCAGGT-CGT CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC 299 ACGCCTGTGA CGGTCCGTCC TGCCATTCCG TTACGAAGTT TAGAGAGTCG A-TTTCAGTA 27161 ||||| |||| ||||||||| |||||||||| |||||||||| ||||||||| | ||| |||| ACGCCCGTGA CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA 359 CCCATTTTTC AGAATTTCAA AGTGTTTTGA AACGAGACCC CCTCGACGGT CCGTCGTGCC 27101 |||| |||| |||||||| | |||||||||| ||||||| | |||||||||| || |||||| CCCA-ATTTC AGAATTTCTA AGTGTTTTGA AACGAGA-CT CCTCGACGGT CCATCGTGCT 417 CATGACGGTC CGTCGTGGAA TCCGTCGTCT CAGCCAG-TT TTCCAGAAAT AACATCTCTT 27042 |||||||||| |||||||| |||||||||| || || | || ||||| |||| || |||| | CATGACGGTC CGTCGTGGGT TCCGTCGTCT CAACCTGTTT TTCCAAAAAT AAAATCTGCT 477 GCTCAAAACG ACTAAACAGG TCGTTACAAT AAATATTAGG TATAATAGAT AAATTTATCA 26982 ||||||||| |||||||||| |||||||| ACTCAAAACG ACTAAACAGG TCGTTACA.. .......... .......... .......... 505 TTTTACCTGA TCTTATTTCA CATGTATGTC ATCTATTTTT AGGTGTGTAT AAATAGATAT 26922 .......... .......... .......... .......... .......... .......... 505 TTAAATTAAA TTTGTATAAA GTTGAAGTAG ACACTGAATT CTACGAGACA TAATACAAGT 26862 .......... .......... .......... .......... .......... .......... 505 AAGAGATCTA GGACGCAAAT TGTCATGTAA GATGACACGC AAAAATGTGT GTATTTATTT 26802 .......... .......... .......... .......... .......... .......... 505 ATTCAACGAA TTTATAGAAA TATAAGTATC TACTCGTGCA CACTCAAAAA TAAAGAATAT 26742 .......... .......... .......... .......... .......... .......... 505 AAATATAAGT GATAAGAGCA TATTTATATA TTATGTCTAA CTATTAATTT GATGTCCGTT 26682 .......... .......... .......... .......... .......... .......... 505 GATCACATAA AAATTGAACC AAATGAATCA TTTCCTACTT ATTCTTAATA TACTTAAATT 26622 .......... .......... .......... .......... .......... .......... 505 AGTTATCTTC CATTATAACA TATACAATTC ATTCATTATT CGTAACTATC CTTTGTAAAT 26562 .......... .......... .......... .......... .......... .......... 505 ATAGGTGCAT CGTATGTTTA ATATATGGAT GAAATATTAA TGAAGATGTA TAAATTTTAT 26502 .......... .......... .......... .......... .......... .......... 505 ACGAGAGTTA TACCATTAAA ATTAAAATTT ATAATGCTTG GTATAAAATT ATACCAAGAA 26442 .......... .......... .......... .......... .......... .......... 505 AAATGTTTTG CATGAATATC ATCTTAAACA AAACAACACA CAAATATGCA ATTCGAATGT 26382 .......... .......... .......... .......... .......... .......... 505 GCATAGAACC AAATATCCCA TAAATTTAAG GTCAATGAGC TAGAGTTCAC CCAGGCAAGC 26322 .......... .......... .......... .......... .......... .......... 505 AGCCTTATTT CCCCCCCCAA ATTTAGGCCT TATTTTTTTT CTTTAAGATT AACATGTCTG 26262 .......... .......... .......... .......... .......... .......... 505 AATTTGAATA AACATTTGAA TAATTTTGTG TCTAAGTTTA AACATTAAAT GATTAATATT 26202 .......... .......... .......... .......... .......... .......... 505 ATTTATTTTT TATCATCTGA ATATGAGTAA TTATTTATAA TTAAACATTA TAAATATATA 26142 .......... .......... .......... .......... .......... .......... 505 ATTTAAAATA AGAAAGTAAT TAACCATCGT TTTTTTTTTT CTCAAAGCAT ATTTAAAAAG 26082 .......... .......... .......... .......... .......... .......... 505 AGGAGGTTGT TCGATTTTGT AACTACACAA TTAAGAATAA AACGGTACTT GCCGATGATA 26022 .......... .......... .......... .......... .......... .......... 505 AAATATCTAC TTTGAATGCT CTTCTTTCAA AAATTAGTGT GTATAATGAA TTTTTTTTAA 25962 .......... .......... .......... .......... .......... .......... 505 AAAAAAGATA TATTTACATT AGATATGATG CAGTTAAACA GTTATTGAAA CATGAGGTTA 25902 .......... .......... .......... .......... .......... .......... 505 TTTTCTTAGA ATGTGTAAGG TCCTAAAAGT TATTTGTAAT CTTTTAACTA AGGAATTTGA 25842 .......... .......... .......... .......... .......... .......... 505 CTTGAAAATG AATAAATGGT CTTTACCTCG AAGGAGATGA AACGGGATGG TGCTAAAGCC 25782 .......... .......... .......... .......... .......... .......... 505 CATTGATTGA GATAATATGA CACAAGGCCA TATTTTTTGA TGCAGATAGT AGGGGCGATT 25722 .......... .......... .......... .......... .......... .......... 505 CAACTCTAAA GCCACTAAAG TAATGACTTT AGGCTTCCAA AATATAACGC CTCAAATTTA 25662 .......... .......... .......... .......... .......... .......... 505 TTTAATGTTA CAGATATACA AATATAAATA TACTTATAAT TATGTATCTA TAATTAGTAT 25602 .......... .......... .......... .......... .......... .......... 505 TAATTGAAAT TTTCTTAATA GTTTCTAATC ATGGGCGAAT CCACATGTAA AGGTGGGGTG 25542 .......... .......... .......... .......... .......... .......... 505 TACGTCCACT CGTTAACTTC GAAAAATCAT GTATAAATAT ATATATATTG AGAAACTGAT 25482 .......... .......... .......... .......... .......... .......... 505 AAGGAAAAAA AATATAATAA AAAATGCAAC CTTAATGAAC ATTGAACTGG TCTTGATTTG 25422 .......... .......... .......... .......... .......... .......... 505 CTGATAGAAA TAAGAAAATA CCTCCTTGCA GACCTAGATT TCAATCCTGA TCAATAAGTC 25362 .......... .......... .......... .......... .......... .......... 505 ACTATCCTAT TCAAATCTTG GCTTCGCCTA TATTTTGTGT TAAATTTGAA CACTAAGAGC 25302 .......... .......... .......... .......... .......... .......... 505 CTGTTTGGCT CAGCTTAAAA GCTGGTCAAA CTGACTTAAA AGCTGGTTTT TGACTTATTT 25242 .......... .......... .......... .......... .......... .......... 505 AGTTGTTTGG CAATACTCAA AATAACTTAC TTTAAGTTAA AAAAAACTTA TTTTAAGCCA 25182 .......... .......... .......... .......... .......... .......... 505 AAAGTTAAAA ACTGGGGTAG GGGTGTTTTT TTTTTTTAGC TTATAAGCTG TTTTAAGTTG 25122 .......... .......... .......... .......... .......... .......... 505 ACCACATTTT TATCTTTTTG CCATTAATAT TTTTATGCAA TCTCCAAATT ACTCATATAA 25062 .......... .......... .......... .......... .......... .......... 505 CTCTAACATC TCTTTCTTCC ATTTTTCCCT TTTCACGTTT GATATAACAA CTTCAGCACT 25002 .......... .......... .......... .......... .......... .......... 505 TTTATCCAAA CGCATAACTG CTTATTTTAA AAATAAATTT CAACACTTCT AAAAGTAATT 24942 .......... .......... .......... .......... .......... .......... 505 TTTTAAAGCT GCTTTTATTA AGCCCATCCA AACGGATCCT AAGTCCGTAT TGTTGATTTA 24882 .......... .......... .......... .......... .......... .......... 505 ACCAAGATTG TGCCACCCTC TTAATACAAC CAAAGAGAGA AAAAAGATAA CCTGGTCGGC 24822 .......... .......... .......... .......... .......... .......... 505 CCAAAAGTGA CCAGACCAGG TCAATCATTA TACATATATT TTTGAAATTT ACTATTTTCT 24762 .......... .......... .......... .......... .......... .......... 505 AAAAGTACAA TATAATTAAA AAACGTATAC AATTTATCAG TTGTTATTTT CTTAATTTGT 24702 .......... .......... .......... .......... .......... .......... 505 CTAATTCTCT TTAATTTGAA AGGGCAACTT TCACATATAG GAAATAAAAT ATTTATATTT 24642 .......... .......... .......... .......... .......... .......... 505 GTATGCTATA GCAAATTTTG TATAATTGCG CTCCATAGCA AACATAAAAC TGTATAATTC 24582 .......... .......... .......... .......... .......... .......... 505 GCTATACATA TACAAGTGTA TAGTTCGCTG GCCTAAATTG TATAATTCGC TGGCCTATTT 24522 .......... .......... .......... .......... .......... .......... 505 CGCTGCAATA GTATAATTCG TTATCCTATT TCACTGCAAT TGTATAATGC ACGATTATAT 24462 .......... .......... .......... .......... .......... .......... 505 AATTAACTGC CTATTTCGCT GCAATATTAA GTGTATAGCA AGAAGATATA TGTTTTTCTC 24402 .......... .......... .......... .......... .......... .......... 505 TCGCTTTATA CAAAAACAGA AACACAATAT ACACACTTCT GTTGTATAAA GCTAGAGAAA 24342 .......... .......... .......... .......... .......... .......... 505 ATTGTATTTT ACTGCAATTG TATAATTCAC AATTGTATAA TTCTTTGACC TTTTTCTCTG 24282 .......... .......... .......... .......... .......... .......... 505 CAATATTTGA AGTAAAATGT TTGTAAATTG TATAATTAAG TGTATAACAC GAAGATATAG 24222 .......... .......... .......... .......... .......... .......... 505 ATTTTTGCAT GTGTATATAC AATTTTCTCT CGCTTTATAC AAAACAGAAA CATAATTATA 24162 .......... .......... .......... .......... .......... .......... 505 CACTTCTGTG TATAAAGCGA GAGAGGCGAG CGAGAATGGA GAGTGGCGAG CGAGATTTCT 24102 .......... .......... .......... .......... .......... .......... 505 GGGAGAGAGG CGCTGGCAAA TTTTAGCTAA CGTTTGCTAT GGAGCACAAT TAAATCAAAC 24042 .......... .......... .......... .......... .......... .......... 505 CCTAACTATT CCATTTATTT TAGGTTGTTA GTTTGCTATT ATATACAATT TTCCCAATTT 23982 .......... .......... .......... .......... .......... .......... 505 GAAATCAATA ATGTTTGAGT ATTGATTCTA TAAGAATATC TTCAATTATT TGGTATCTTC 23922 .......... .......... .......... .......... .......... .......... 505 TTAGATATTT CAAGCTTAAA CTAATTAAAT TTATCGAATA ATTAAATTTT AAAAGACGTA 23862 .......... .......... .......... .......... .......... .......... 505 ATCTTAACTT TAAATGTGAT CTAAAGTGTA ACGATCACTT CTTTCGAGTT TTTGGCCAAA 23802 .......... .......... .......... .......... .......... .......... 505 ATCATTTTTA AACTATACCT CAGACTCAAA CTACATCCTT AAAGTATCAT TCTTACCATG 23742 .......... .......... .......... .......... .......... .......... 505 AAACATCCTT AAAGTATTTT AAAGTTAATA ATTTTCATCC TTCTACTTGA ATTTATCATA 23682 .......... .......... .......... .......... .......... .......... 505 AAACTAATTG ATATATCCTA CAAAATTTAA GTTGTCCCTT CCTAATTATT ATTCTTA 23625 |||| ||| | ||| | ||| |||| ||| ||| .......... .......... .....TTTAT GTTCTTCCTA CTTAAATATT ATTATTA 537 hqPGS_C04HBa0077O05.1-_SGN-E377132- (27517 27014,23656 23625) ******************************************************************************** EST sequence 92 -strand 647 n (File: SGN-E396055-) 1 ATTAGCATAT AATTAAGAAT AAAAAGATGG AAATAATAAC CCACTAATTT ACTCAAGGGT 61 TCCTTTTTTT AACCCCCAGG GTAATTAGAC TTATTAACAT AAACCCCACT AACTTTATAA 121 TTAAAGTAGG AATAGTCCAA AACGTCCCTT AAAACGTGTA AAGAAATCCG ACCCAGACTG 181 GGATTACGCA ACCTGTGATG GCCCGTCGTG CCTGCGACGG TCCGTCCTGC AGGTCGTCGC 241 AAGGTTCAGA GACTCAATTT CCACCAAAGA GTCTGTGACG GTCCGTCACG CCCGTGACGG 301 TCCGTCGTGC CATTCCGTTA CGAAGTTCAG AGAGTCGATT TTTAGTACCC AATTTCAGAA 361 TTTCTAAGTG TTTTGAAACG AGACTCCTCG ACGGTCCATC GTGCTCATGA CGGTCCGTCG 421 TGGGTTCCGT CGTCTCAACC TGTTTTTCCA AAAATAAAAT CTGCTACTCA AAACGACTAA 481 ACAGGTCGTT ACATTTATGT TCTTCCTACT TAAATATTAT TATTATTTTA CGATTTATAA 541 CACTATTAGA AACAAAGATT TTCTCAACCA TGAATTAATG AAAAAATTAT GCCATAAAAT 601 ATAAAAAATT TACTCATTTT TCATTGAGCT AATTCATAAA AAAAAAA Predicted gene structure (within gDNA segment 28111 to 22780): Exon 1 27501 27014 ( 488 n); cDNA 1 493 ( 493 n); score: 0.863 Intron 1 27013 23657 (3357 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 23656 23625 ( 32 n); cDNA 494 525 ( 32 n); score: 0.781 PPA cDNA 636 647 MATCH C04HBa0077O05.1- SGN-E396055- 0.863 520 0.804 C PGS_C04HBa0077O05.1-_SGN-E396055- (27501 27014,23656 23625) Alignment (genomic DNA sequence = upper lines): ATTAGCATAT AATTAAGAAT -AAAAGATGG CAATAATAAC CCACTAATTT ACTCAA-GGT 27444 |||||||||| |||||||||| ||||||||| ||||||||| |||||||||| |||||| ||| ATTAGCATAT AATTAAGAAT AAAAAGATGG AAATAATAAC CCACTAATTT ACTCAAGGGT 60 TACCTCTTTT AACCCCCA-A GTAATTAGAC TTATTAACAT TAA-CCCACT AACTTTATAA 27386 | | | |||| |||||||| |||||||||| |||||||||| || |||||| |||||||||| TCCTTTTTTT AACCCCCAGG GTAATTAGAC TTATTAACAT AAACCCCACT AACTTTATAA 120 TTAAAACAGG AATAGTCAAA AACTTCCTTT AAAACAT-TA AAGAAATCCG ACTCAGCCTG 27327 ||||| ||| ||||||| || ||| ||| || ||||| | || |||||||||| || ||| ||| TTAAAGTAGG AATAGTCCAA AACGTCCCTT AAAACGTGTA AAGAAATCCG ACCCAGACTG 180 GGATTACGCA GCCTGTGACG GCCTGTCATG CCTGCGACGG TCCGTCCTGC TGCTCCGTCA 27267 |||||||||| ||||||| | ||| ||| || |||||||||| |||||||||| | | |||| GGATTACGCA ACCTGTGATG GCCCGTCGTG CCTGCGACGG TCCGTCCTGC AGGT-CGTCG 239 CAGAGTTCAG AGACTCAA-T TCCCTTAAAG AGTCTGTGAC GGTCCGTCAC GCCTGTGACG 27208 || |||||| |||||||| | ||| |||| |||||||||| |||||||||| ||| |||||| CAAGGTTCAG AGACTCAATT TCCACCAAAG AGTCTGTGAC GGTCCGTCAC GCCCGTGACG 299 GTCCGTCCTG CCATTCCGTT ACGAAGTTTA GAGAGTCGA- TTTCAGTACC CATTTTTCAG 27149 ||||||| || |||||||||| |||||||| | ||||||||| ||| |||||| || |||||| GTCCGTCGTG CCATTCCGTT ACGAAGTTCA GAGAGTCGAT TTTTAGTACC CA-ATTTCAG 358 AATTTCAAAG TGTTTTGAAA CGAGACCCCC TCGACGGTCC GTCGTGCCCA TGACGGTCCG 27089 |||||| ||| |||||||||| ||||| | || |||||||||| |||||| || |||||||||| AATTTCTAAG TGTTTTGAAA CGAGA-CTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 417 TCGTGGAATC CGTCGTCTCA GCCAG-TTTT CCAGAAATAA CATCTCTTGC TCAAAACGAC 27030 |||||| || |||||||||| || | |||| ||| |||||| |||| | | |||||||||| TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 477 TAAACAGGTC GTTACAATAA ATATTAGGTA TAATAGATAA ATTTATCATT TTACCTGATC 26970 |||||||||| |||||| TAAACAGGTC GTTACA.... .......... .......... .......... .......... 493 TTATTTCACA TGTATGTCAT CTATTTTTAG GTGTGTATAA ATAGATATTT AAATTAAATT 26910 .......... .......... .......... .......... .......... .......... 493 TGTATAAAGT TGAAGTAGAC ACTGAATTCT ACGAGACATA ATACAAGTAA GAGATCTAGG 26850 .......... .......... .......... .......... .......... .......... 493 ACGCAAATTG TCATGTAAGA TGACACGCAA AAATGTGTGT ATTTATTTAT TCAACGAATT 26790 .......... .......... .......... .......... .......... .......... 493 TATAGAAATA TAAGTATCTA CTCGTGCACA CTCAAAAATA AAGAATATAA ATATAAGTGA 26730 .......... .......... .......... .......... .......... .......... 493 TAAGAGCATA TTTATATATT ATGTCTAACT ATTAATTTGA TGTCCGTTGA TCACATAAAA 26670 .......... .......... .......... .......... .......... .......... 493 ATTGAACCAA ATGAATCATT TCCTACTTAT TCTTAATATA CTTAAATTAG TTATCTTCCA 26610 .......... .......... .......... .......... .......... .......... 493 TTATAACATA TACAATTCAT TCATTATTCG TAACTATCCT TTGTAAATAT AGGTGCATCG 26550 .......... .......... .......... .......... .......... .......... 493 TATGTTTAAT ATATGGATGA AATATTAATG AAGATGTATA AATTTTATAC GAGAGTTATA 26490 .......... .......... .......... .......... .......... .......... 493 CCATTAAAAT TAAAATTTAT AATGCTTGGT ATAAAATTAT ACCAAGAAAA ATGTTTTGCA 26430 .......... .......... .......... .......... .......... .......... 493 TGAATATCAT CTTAAACAAA ACAACACACA AATATGCAAT TCGAATGTGC ATAGAACCAA 26370 .......... .......... .......... .......... .......... .......... 493 ATATCCCATA AATTTAAGGT CAATGAGCTA GAGTTCACCC AGGCAAGCAG CCTTATTTCC 26310 .......... .......... .......... .......... .......... .......... 493 CCCCCCAAAT TTAGGCCTTA TTTTTTTTCT TTAAGATTAA CATGTCTGAA TTTGAATAAA 26250 .......... .......... .......... .......... .......... .......... 493 CATTTGAATA ATTTTGTGTC TAAGTTTAAA CATTAAATGA TTAATATTAT TTATTTTTTA 26190 .......... .......... .......... .......... .......... .......... 493 TCATCTGAAT ATGAGTAATT ATTTATAATT AAACATTATA AATATATAAT TTAAAATAAG 26130 .......... .......... .......... .......... .......... .......... 493 AAAGTAATTA ACCATCGTTT TTTTTTTTCT CAAAGCATAT TTAAAAAGAG GAGGTTGTTC 26070 .......... .......... .......... .......... .......... .......... 493 GATTTTGTAA CTACACAATT AAGAATAAAA CGGTACTTGC CGATGATAAA ATATCTACTT 26010 .......... .......... .......... .......... .......... .......... 493 TGAATGCTCT TCTTTCAAAA ATTAGTGTGT ATAATGAATT TTTTTTAAAA AAAAGATATA 25950 .......... .......... .......... .......... .......... .......... 493 TTTACATTAG ATATGATGCA GTTAAACAGT TATTGAAACA TGAGGTTATT TTCTTAGAAT 25890 .......... .......... .......... .......... .......... .......... 493 GTGTAAGGTC CTAAAAGTTA TTTGTAATCT TTTAACTAAG GAATTTGACT TGAAAATGAA 25830 .......... .......... .......... .......... .......... .......... 493 TAAATGGTCT TTACCTCGAA GGAGATGAAA CGGGATGGTG CTAAAGCCCA TTGATTGAGA 25770 .......... .......... .......... .......... .......... .......... 493 TAATATGACA CAAGGCCATA TTTTTTGATG CAGATAGTAG GGGCGATTCA ACTCTAAAGC 25710 .......... .......... .......... .......... .......... .......... 493 CACTAAAGTA ATGACTTTAG GCTTCCAAAA TATAACGCCT CAAATTTATT TAATGTTACA 25650 .......... .......... .......... .......... .......... .......... 493 GATATACAAA TATAAATATA CTTATAATTA TGTATCTATA ATTAGTATTA ATTGAAATTT 25590 .......... .......... .......... .......... .......... .......... 493 TCTTAATAGT TTCTAATCAT GGGCGAATCC ACATGTAAAG GTGGGGTGTA CGTCCACTCG 25530 .......... .......... .......... .......... .......... .......... 493 TTAACTTCGA AAAATCATGT ATAAATATAT ATATATTGAG AAACTGATAA GGAAAAAAAA 25470 .......... .......... .......... .......... .......... .......... 493 TATAATAAAA AATGCAACCT TAATGAACAT TGAACTGGTC TTGATTTGCT GATAGAAATA 25410 .......... .......... .......... .......... .......... .......... 493 AGAAAATACC TCCTTGCAGA CCTAGATTTC AATCCTGATC AATAAGTCAC TATCCTATTC 25350 .......... .......... .......... .......... .......... .......... 493 AAATCTTGGC TTCGCCTATA TTTTGTGTTA AATTTGAACA CTAAGAGCCT GTTTGGCTCA 25290 .......... .......... .......... .......... .......... .......... 493 GCTTAAAAGC TGGTCAAACT GACTTAAAAG CTGGTTTTTG ACTTATTTAG TTGTTTGGCA 25230 .......... .......... .......... .......... .......... .......... 493 ATACTCAAAA TAACTTACTT TAAGTTAAAA AAAACTTATT TTAAGCCAAA AGTTAAAAAC 25170 .......... .......... .......... .......... .......... .......... 493 TGGGGTAGGG GTGTTTTTTT TTTTTAGCTT ATAAGCTGTT TTAAGTTGAC CACATTTTTA 25110 .......... .......... .......... .......... .......... .......... 493 TCTTTTTGCC ATTAATATTT TTATGCAATC TCCAAATTAC TCATATAACT CTAACATCTC 25050 .......... .......... .......... .......... .......... .......... 493 TTTCTTCCAT TTTTCCCTTT TCACGTTTGA TATAACAACT TCAGCACTTT TATCCAAACG 24990 .......... .......... .......... .......... .......... .......... 493 CATAACTGCT TATTTTAAAA ATAAATTTCA ACACTTCTAA AAGTAATTTT TTAAAGCTGC 24930 .......... .......... .......... .......... .......... .......... 493 TTTTATTAAG CCCATCCAAA CGGATCCTAA GTCCGTATTG TTGATTTAAC CAAGATTGTG 24870 .......... .......... .......... .......... .......... .......... 493 CCACCCTCTT AATACAACCA AAGAGAGAAA AAAGATAACC TGGTCGGCCC AAAAGTGACC 24810 .......... .......... .......... .......... .......... .......... 493 AGACCAGGTC AATCATTATA CATATATTTT TGAAATTTAC TATTTTCTAA AAGTACAATA 24750 .......... .......... .......... .......... .......... .......... 493 TAATTAAAAA ACGTATACAA TTTATCAGTT GTTATTTTCT TAATTTGTCT AATTCTCTTT 24690 .......... .......... .......... .......... .......... .......... 493 AATTTGAAAG GGCAACTTTC ACATATAGGA AATAAAATAT TTATATTTGT ATGCTATAGC 24630 .......... .......... .......... .......... .......... .......... 493 AAATTTTGTA TAATTGCGCT CCATAGCAAA CATAAAACTG TATAATTCGC TATACATATA 24570 .......... .......... .......... .......... .......... .......... 493 CAAGTGTATA GTTCGCTGGC CTAAATTGTA TAATTCGCTG GCCTATTTCG CTGCAATAGT 24510 .......... .......... .......... .......... .......... .......... 493 ATAATTCGTT ATCCTATTTC ACTGCAATTG TATAATGCAC GATTATATAA TTAACTGCCT 24450 .......... .......... .......... .......... .......... .......... 493 ATTTCGCTGC AATATTAAGT GTATAGCAAG AAGATATATG TTTTTCTCTC GCTTTATACA 24390 .......... .......... .......... .......... .......... .......... 493 AAAACAGAAA CACAATATAC ACACTTCTGT TGTATAAAGC TAGAGAAAAT TGTATTTTAC 24330 .......... .......... .......... .......... .......... .......... 493 TGCAATTGTA TAATTCACAA TTGTATAATT CTTTGACCTT TTTCTCTGCA ATATTTGAAG 24270 .......... .......... .......... .......... .......... .......... 493 TAAAATGTTT GTAAATTGTA TAATTAAGTG TATAACACGA AGATATAGAT TTTTGCATGT 24210 .......... .......... .......... .......... .......... .......... 493 GTATATACAA TTTTCTCTCG CTTTATACAA AACAGAAACA TAATTATACA CTTCTGTGTA 24150 .......... .......... .......... .......... .......... .......... 493 TAAAGCGAGA GAGGCGAGCG AGAATGGAGA GTGGCGAGCG AGATTTCTGG GAGAGAGGCG 24090 .......... .......... .......... .......... .......... .......... 493 CTGGCAAATT TTAGCTAACG TTTGCTATGG AGCACAATTA AATCAAACCC TAACTATTCC 24030 .......... .......... .......... .......... .......... .......... 493 ATTTATTTTA GGTTGTTAGT TTGCTATTAT ATACAATTTT CCCAATTTGA AATCAATAAT 23970 .......... .......... .......... .......... .......... .......... 493 GTTTGAGTAT TGATTCTATA AGAATATCTT CAATTATTTG GTATCTTCTT AGATATTTCA 23910 .......... .......... .......... .......... .......... .......... 493 AGCTTAAACT AATTAAATTT ATCGAATAAT TAAATTTTAA AAGACGTAAT CTTAACTTTA 23850 .......... .......... .......... .......... .......... .......... 493 AATGTGATCT AAAGTGTAAC GATCACTTCT TTCGAGTTTT TGGCCAAAAT CATTTTTAAA 23790 .......... .......... .......... .......... .......... .......... 493 CTATACCTCA GACTCAAACT ACATCCTTAA AGTATCATTC TTACCATGAA ACATCCTTAA 23730 .......... .......... .......... .......... .......... .......... 493 AGTATTTTAA AGTTAATAAT TTTCATCCTT CTACTTGAAT TTATCATAAA ACTAATTGAT 23670 .......... .......... .......... .......... .......... .......... 493 ATATCCTACA AAATTTAAGT TGTCCCTTCC TAATTATTAT TCTTA 23625 |||| || | | ||| | ||| |||||| | ||| .......... ...TTTATGT TCTTCCTACT TAAATATTAT TATTA 525 hqPGS_C04HBa0077O05.1-_SGN-E396055- (27501 27014,23656 23625) ******************************************************************************** EST sequence 90 -strand 640 n (File: SGN-E398551-) 1 TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAA TAATTTACTC AAGGTTACCT 61 CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA TAATTAAAGT 121 AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA CTGGGATTAC 181 GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT CGCAAGGTTC 241 AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA CGGTCCGTCG 301 TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA GAATTTCTAA 361 GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG TCGTGGGTTC 421 CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC TAAACAGGTC 481 GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA TAACACTATT 541 AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA AATATAAAAA 601 ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA Predicted gene structure (within gDNA segment 28109 to 22780): Exon 1 27499 27014 ( 486 n); cDNA 1 486 ( 486 n); score: 0.887 Intron 1 27013 23657 (3357 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 23656 23625 ( 32 n); cDNA 487 518 ( 32 n); score: 0.781 PPA cDNA 629 640 MATCH C04HBa0077O05.1- SGN-E398551- 0.887 518 0.809 C PGS_C04HBa0077O05.1-_SGN-E398551- (27499 27014,23656 23625) Alignment (genomic DNA sequence = upper lines): TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT CAAGGTTACC 27440 |||||||||| |||||||||| ||||||| || |||||||||| ||||||||| |||||||||| TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA ATAATTTACT CAAGGTTACC 59 TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT ATAATTAAAA 27380 |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| ||||||||| TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT ATAATTAAAG 119 CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG CCTGGGATTA 27321 ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ||||||||| TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG ACTGGGATTA 179 CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC GTCACAGAGT 27261 |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ||| || || CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C GTCGCAAGGT 238 TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT GACGGTCCGT 27202 |||||||||| || |||| |||||||||| |||||||||| ||||||| || |||||||||| TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT GACGGTCCGT 298 CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT TCAGAATTTC 27143 | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || |||||||||| CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT TCAGAATTTC 357 AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG TCCGTCGTGG 27083 ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| |||||||||| TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG TCCGTCGTGG 416 AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA CGACTAAACA 27024 |||||||| |||| || | ||||||| || |||| |||| | ||||||| |||||||||| GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA CGACTAAACA 476 GGTCGTTACA ATAAATATTA GGTATAATAG ATAAATTTAT CATTTTACCT GATCTTATTT 26964 |||||||||| GGTCGTTACA .......... .......... .......... .......... .......... 486 CACATGTATG TCATCTATTT TTAGGTGTGT ATAAATAGAT ATTTAAATTA AATTTGTATA 26904 .......... .......... .......... .......... .......... .......... 486 AAGTTGAAGT AGACACTGAA TTCTACGAGA CATAATACAA GTAAGAGATC TAGGACGCAA 26844 .......... .......... .......... .......... .......... .......... 486 ATTGTCATGT AAGATGACAC GCAAAAATGT GTGTATTTAT TTATTCAACG AATTTATAGA 26784 .......... .......... .......... .......... .......... .......... 486 AATATAAGTA TCTACTCGTG CACACTCAAA AATAAAGAAT ATAAATATAA GTGATAAGAG 26724 .......... .......... .......... .......... .......... .......... 486 CATATTTATA TATTATGTCT AACTATTAAT TTGATGTCCG TTGATCACAT AAAAATTGAA 26664 .......... .......... .......... .......... .......... .......... 486 CCAAATGAAT CATTTCCTAC TTATTCTTAA TATACTTAAA TTAGTTATCT TCCATTATAA 26604 .......... .......... .......... .......... .......... .......... 486 CATATACAAT TCATTCATTA TTCGTAACTA TCCTTTGTAA ATATAGGTGC ATCGTATGTT 26544 .......... .......... .......... .......... .......... .......... 486 TAATATATGG ATGAAATATT AATGAAGATG TATAAATTTT ATACGAGAGT TATACCATTA 26484 .......... .......... .......... .......... .......... .......... 486 AAATTAAAAT TTATAATGCT TGGTATAAAA TTATACCAAG AAAAATGTTT TGCATGAATA 26424 .......... .......... .......... .......... .......... .......... 486 TCATCTTAAA CAAAACAACA CACAAATATG CAATTCGAAT GTGCATAGAA CCAAATATCC 26364 .......... .......... .......... .......... .......... .......... 486 CATAAATTTA AGGTCAATGA GCTAGAGTTC ACCCAGGCAA GCAGCCTTAT TTCCCCCCCC 26304 .......... .......... .......... .......... .......... .......... 486 AAATTTAGGC CTTATTTTTT TTCTTTAAGA TTAACATGTC TGAATTTGAA TAAACATTTG 26244 .......... .......... .......... .......... .......... .......... 486 AATAATTTTG TGTCTAAGTT TAAACATTAA ATGATTAATA TTATTTATTT TTTATCATCT 26184 .......... .......... .......... .......... .......... .......... 486 GAATATGAGT AATTATTTAT AATTAAACAT TATAAATATA TAATTTAAAA TAAGAAAGTA 26124 .......... .......... .......... .......... .......... .......... 486 ATTAACCATC GTTTTTTTTT TTCTCAAAGC ATATTTAAAA AGAGGAGGTT GTTCGATTTT 26064 .......... .......... .......... .......... .......... .......... 486 GTAACTACAC AATTAAGAAT AAAACGGTAC TTGCCGATGA TAAAATATCT ACTTTGAATG 26004 .......... .......... .......... .......... .......... .......... 486 CTCTTCTTTC AAAAATTAGT GTGTATAATG AATTTTTTTT AAAAAAAAGA TATATTTACA 25944 .......... .......... .......... .......... .......... .......... 486 TTAGATATGA TGCAGTTAAA CAGTTATTGA AACATGAGGT TATTTTCTTA GAATGTGTAA 25884 .......... .......... .......... .......... .......... .......... 486 GGTCCTAAAA GTTATTTGTA ATCTTTTAAC TAAGGAATTT GACTTGAAAA TGAATAAATG 25824 .......... .......... .......... .......... .......... .......... 486 GTCTTTACCT CGAAGGAGAT GAAACGGGAT GGTGCTAAAG CCCATTGATT GAGATAATAT 25764 .......... .......... .......... .......... .......... .......... 486 GACACAAGGC CATATTTTTT GATGCAGATA GTAGGGGCGA TTCAACTCTA AAGCCACTAA 25704 .......... .......... .......... .......... .......... .......... 486 AGTAATGACT TTAGGCTTCC AAAATATAAC GCCTCAAATT TATTTAATGT TACAGATATA 25644 .......... .......... .......... .......... .......... .......... 486 CAAATATAAA TATACTTATA ATTATGTATC TATAATTAGT ATTAATTGAA ATTTTCTTAA 25584 .......... .......... .......... .......... .......... .......... 486 TAGTTTCTAA TCATGGGCGA ATCCACATGT AAAGGTGGGG TGTACGTCCA CTCGTTAACT 25524 .......... .......... .......... .......... .......... .......... 486 TCGAAAAATC ATGTATAAAT ATATATATAT TGAGAAACTG ATAAGGAAAA AAAATATAAT 25464 .......... .......... .......... .......... .......... .......... 486 AAAAAATGCA ACCTTAATGA ACATTGAACT GGTCTTGATT TGCTGATAGA AATAAGAAAA 25404 .......... .......... .......... .......... .......... .......... 486 TACCTCCTTG CAGACCTAGA TTTCAATCCT GATCAATAAG TCACTATCCT ATTCAAATCT 25344 .......... .......... .......... .......... .......... .......... 486 TGGCTTCGCC TATATTTTGT GTTAAATTTG AACACTAAGA GCCTGTTTGG CTCAGCTTAA 25284 .......... .......... .......... .......... .......... .......... 486 AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT TTAGTTGTTT GGCAATACTC 25224 .......... .......... .......... .......... .......... .......... 486 AAAATAACTT ACTTTAAGTT AAAAAAAACT TATTTTAAGC CAAAAGTTAA AAACTGGGGT 25164 .......... .......... .......... .......... .......... .......... 486 AGGGGTGTTT TTTTTTTTTA GCTTATAAGC TGTTTTAAGT TGACCACATT TTTATCTTTT 25104 .......... .......... .......... .......... .......... .......... 486 TGCCATTAAT ATTTTTATGC AATCTCCAAA TTACTCATAT AACTCTAACA TCTCTTTCTT 25044 .......... .......... .......... .......... .......... .......... 486 CCATTTTTCC CTTTTCACGT TTGATATAAC AACTTCAGCA CTTTTATCCA AACGCATAAC 24984 .......... .......... .......... .......... .......... .......... 486 TGCTTATTTT AAAAATAAAT TTCAACACTT CTAAAAGTAA TTTTTTAAAG CTGCTTTTAT 24924 .......... .......... .......... .......... .......... .......... 486 TAAGCCCATC CAAACGGATC CTAAGTCCGT ATTGTTGATT TAACCAAGAT TGTGCCACCC 24864 .......... .......... .......... .......... .......... .......... 486 TCTTAATACA ACCAAAGAGA GAAAAAAGAT AACCTGGTCG GCCCAAAAGT GACCAGACCA 24804 .......... .......... .......... .......... .......... .......... 486 GGTCAATCAT TATACATATA TTTTTGAAAT TTACTATTTT CTAAAAGTAC AATATAATTA 24744 .......... .......... .......... .......... .......... .......... 486 AAAAACGTAT ACAATTTATC AGTTGTTATT TTCTTAATTT GTCTAATTCT CTTTAATTTG 24684 .......... .......... .......... .......... .......... .......... 486 AAAGGGCAAC TTTCACATAT AGGAAATAAA ATATTTATAT TTGTATGCTA TAGCAAATTT 24624 .......... .......... .......... .......... .......... .......... 486 TGTATAATTG CGCTCCATAG CAAACATAAA ACTGTATAAT TCGCTATACA TATACAAGTG 24564 .......... .......... .......... .......... .......... .......... 486 TATAGTTCGC TGGCCTAAAT TGTATAATTC GCTGGCCTAT TTCGCTGCAA TAGTATAATT 24504 .......... .......... .......... .......... .......... .......... 486 CGTTATCCTA TTTCACTGCA ATTGTATAAT GCACGATTAT ATAATTAACT GCCTATTTCG 24444 .......... .......... .......... .......... .......... .......... 486 CTGCAATATT AAGTGTATAG CAAGAAGATA TATGTTTTTC TCTCGCTTTA TACAAAAACA 24384 .......... .......... .......... .......... .......... .......... 486 GAAACACAAT ATACACACTT CTGTTGTATA AAGCTAGAGA AAATTGTATT TTACTGCAAT 24324 .......... .......... .......... .......... .......... .......... 486 TGTATAATTC ACAATTGTAT AATTCTTTGA CCTTTTTCTC TGCAATATTT GAAGTAAAAT 24264 .......... .......... .......... .......... .......... .......... 486 GTTTGTAAAT TGTATAATTA AGTGTATAAC ACGAAGATAT AGATTTTTGC ATGTGTATAT 24204 .......... .......... .......... .......... .......... .......... 486 ACAATTTTCT CTCGCTTTAT ACAAAACAGA AACATAATTA TACACTTCTG TGTATAAAGC 24144 .......... .......... .......... .......... .......... .......... 486 GAGAGAGGCG AGCGAGAATG GAGAGTGGCG AGCGAGATTT CTGGGAGAGA GGCGCTGGCA 24084 .......... .......... .......... .......... .......... .......... 486 AATTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA ACCCTAACTA TTCCATTTAT 24024 .......... .......... .......... .......... .......... .......... 486 TTTAGGTTGT TAGTTTGCTA TTATATACAA TTTTCCCAAT TTGAAATCAA TAATGTTTGA 23964 .......... .......... .......... .......... .......... .......... 486 GTATTGATTC TATAAGAATA TCTTCAATTA TTTGGTATCT TCTTAGATAT TTCAAGCTTA 23904 .......... .......... .......... .......... .......... .......... 486 AACTAATTAA ATTTATCGAA TAATTAAATT TTAAAAGACG TAATCTTAAC TTTAAATGTG 23844 .......... .......... .......... .......... .......... .......... 486 ATCTAAAGTG TAACGATCAC TTCTTTCGAG TTTTTGGCCA AAATCATTTT TAAACTATAC 23784 .......... .......... .......... .......... .......... .......... 486 CTCAGACTCA AACTACATCC TTAAAGTATC ATTCTTACCA TGAAACATCC TTAAAGTATT 23724 .......... .......... .......... .......... .......... .......... 486 TTAAAGTTAA TAATTTTCAT CCTTCTACTT GAATTTATCA TAAAACTAAT TGATATATCC 23664 .......... .......... .......... .......... .......... .......... 486 TACAAAATTT AAGTTGTCCC TTCCTAATTA TTATTCTTA 23625 ||| | ||| | || | | ||| || ||||| ||| .......TTT ATGTTCTTCC TACTTAAATA TTATTATTA 518 hqPGS_C04HBa0077O05.1-_SGN-E398551- (27499 27014,23656 23625) ******************************************************************************** EST sequence 88 -strand 630 n (File: SGN-E396038-) 1 TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC AAGGTTACCT CTTTTAACCC 61 CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA TAATTAAAGT AGGAATAGTC 121 CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA CTGGGATTAC GCAACCTGTG 181 ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT CGCAAGGTTC AGAGACTCAA 241 TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA CGGTCCGTCG TGCCATTCCG 301 TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA GAATTTCTAA GTGTTTTGAA 361 ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG TCGTGGGTTC CGTCGTCTCA 421 ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC TAAACAGGTC GTTACATTTA 481 TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA TAACACTATT AGAAACAAAG 541 ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA AATATAAAAA ATTTACTCAT 601 TTTTCATAGA GTTAAATAAT AAAAAAAAAA Predicted gene structure (within gDNA segment 28099 to 22780): Exon 1 27489 27014 ( 476 n); cDNA 1 476 ( 476 n); score: 0.887 Intron 1 27013 23657 (3357 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 23656 23625 ( 32 n); cDNA 477 508 ( 32 n); score: 0.781 PPA cDNA 621 630 MATCH C04HBa0077O05.1- SGN-E396038- 0.887 508 0.806 C PGS_C04HBa0077O05.1-_SGN-E396038- (27489 27014,23656 23625) Alignment (genomic DNA sequence = upper lines): TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT CAAGGTTACC TCTTTTAACC 27430 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT CAAGGTTACC TCTTTTAACC 59 CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT ATAATTAAAA CAGGAATAGT 27370 |||| ||||| |||||||||| ||||| |||| |||||||||| ||||||||| ||||||||| CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT ATAATTAAAG TAGGAATAGT 119 CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG CCTGGGATTA CGCAGCCTGT 27311 | ||||| || | ||||||| | |||||||| |||||| ||| ||||||||| |||| ||||| CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG ACTGGGATTA CGCAACCTGT 179 GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC GTCACAGAGT TCAGAGACTC 27251 || |||| || | |||||||| |||||||||| |||| | | | ||| || || |||||||||| GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C GTCGCAAGGT TCAGAGACTC 238 AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT GACGGTCCGT CCTGCCATTC 27192 || |||| |||||||||| |||||||||| ||||||| || |||||||||| | |||||||| AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT GACGGTCCGT CGTGCCATTC 298 CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT TCAGAATTTC AAAGTGTTTT 27133 |||||||||| || ||||||| ||| ||| || |||||| || |||||||||| ||||||||| CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT TCAGAATTTC TAAGTGTTTT 357 GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG TCCGTCGTGG AATCCGTCGT 27073 ||||||||| | |||||||| |||| ||||| | |||||||| |||||||||| |||||||| GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG TCCGTCGTGG GTTCCGTCGT 416 CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA CGACTAAACA GGTCGTTACA 27014 |||| || | ||||||| || |||| |||| | ||||||| |||||||||| |||||||||| CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA CGACTAAACA GGTCGTTACA 476 ATAAATATTA GGTATAATAG ATAAATTTAT CATTTTACCT GATCTTATTT CACATGTATG 26954 .......... .......... .......... .......... .......... .......... 476 TCATCTATTT TTAGGTGTGT ATAAATAGAT ATTTAAATTA AATTTGTATA AAGTTGAAGT 26894 .......... .......... .......... .......... .......... .......... 476 AGACACTGAA TTCTACGAGA CATAATACAA GTAAGAGATC TAGGACGCAA ATTGTCATGT 26834 .......... .......... .......... .......... .......... .......... 476 AAGATGACAC GCAAAAATGT GTGTATTTAT TTATTCAACG AATTTATAGA AATATAAGTA 26774 .......... .......... .......... .......... .......... .......... 476 TCTACTCGTG CACACTCAAA AATAAAGAAT ATAAATATAA GTGATAAGAG CATATTTATA 26714 .......... .......... .......... .......... .......... .......... 476 TATTATGTCT AACTATTAAT TTGATGTCCG TTGATCACAT AAAAATTGAA CCAAATGAAT 26654 .......... .......... .......... .......... .......... .......... 476 CATTTCCTAC TTATTCTTAA TATACTTAAA TTAGTTATCT TCCATTATAA CATATACAAT 26594 .......... .......... .......... .......... .......... .......... 476 TCATTCATTA TTCGTAACTA TCCTTTGTAA ATATAGGTGC ATCGTATGTT TAATATATGG 26534 .......... .......... .......... .......... .......... .......... 476 ATGAAATATT AATGAAGATG TATAAATTTT ATACGAGAGT TATACCATTA AAATTAAAAT 26474 .......... .......... .......... .......... .......... .......... 476 TTATAATGCT TGGTATAAAA TTATACCAAG AAAAATGTTT TGCATGAATA TCATCTTAAA 26414 .......... .......... .......... .......... .......... .......... 476 CAAAACAACA CACAAATATG CAATTCGAAT GTGCATAGAA CCAAATATCC CATAAATTTA 26354 .......... .......... .......... .......... .......... .......... 476 AGGTCAATGA GCTAGAGTTC ACCCAGGCAA GCAGCCTTAT TTCCCCCCCC AAATTTAGGC 26294 .......... .......... .......... .......... .......... .......... 476 CTTATTTTTT TTCTTTAAGA TTAACATGTC TGAATTTGAA TAAACATTTG AATAATTTTG 26234 .......... .......... .......... .......... .......... .......... 476 TGTCTAAGTT TAAACATTAA ATGATTAATA TTATTTATTT TTTATCATCT GAATATGAGT 26174 .......... .......... .......... .......... .......... .......... 476 AATTATTTAT AATTAAACAT TATAAATATA TAATTTAAAA TAAGAAAGTA ATTAACCATC 26114 .......... .......... .......... .......... .......... .......... 476 GTTTTTTTTT TTCTCAAAGC ATATTTAAAA AGAGGAGGTT GTTCGATTTT GTAACTACAC 26054 .......... .......... .......... .......... .......... .......... 476 AATTAAGAAT AAAACGGTAC TTGCCGATGA TAAAATATCT ACTTTGAATG CTCTTCTTTC 25994 .......... .......... .......... .......... .......... .......... 476 AAAAATTAGT GTGTATAATG AATTTTTTTT AAAAAAAAGA TATATTTACA TTAGATATGA 25934 .......... .......... .......... .......... .......... .......... 476 TGCAGTTAAA CAGTTATTGA AACATGAGGT TATTTTCTTA GAATGTGTAA GGTCCTAAAA 25874 .......... .......... .......... .......... .......... .......... 476 GTTATTTGTA ATCTTTTAAC TAAGGAATTT GACTTGAAAA TGAATAAATG GTCTTTACCT 25814 .......... .......... .......... .......... .......... .......... 476 CGAAGGAGAT GAAACGGGAT GGTGCTAAAG CCCATTGATT GAGATAATAT GACACAAGGC 25754 .......... .......... .......... .......... .......... .......... 476 CATATTTTTT GATGCAGATA GTAGGGGCGA TTCAACTCTA AAGCCACTAA AGTAATGACT 25694 .......... .......... .......... .......... .......... .......... 476 TTAGGCTTCC AAAATATAAC GCCTCAAATT TATTTAATGT TACAGATATA CAAATATAAA 25634 .......... .......... .......... .......... .......... .......... 476 TATACTTATA ATTATGTATC TATAATTAGT ATTAATTGAA ATTTTCTTAA TAGTTTCTAA 25574 .......... .......... .......... .......... .......... .......... 476 TCATGGGCGA ATCCACATGT AAAGGTGGGG TGTACGTCCA CTCGTTAACT TCGAAAAATC 25514 .......... .......... .......... .......... .......... .......... 476 ATGTATAAAT ATATATATAT TGAGAAACTG ATAAGGAAAA AAAATATAAT AAAAAATGCA 25454 .......... .......... .......... .......... .......... .......... 476 ACCTTAATGA ACATTGAACT GGTCTTGATT TGCTGATAGA AATAAGAAAA TACCTCCTTG 25394 .......... .......... .......... .......... .......... .......... 476 CAGACCTAGA TTTCAATCCT GATCAATAAG TCACTATCCT ATTCAAATCT TGGCTTCGCC 25334 .......... .......... .......... .......... .......... .......... 476 TATATTTTGT GTTAAATTTG AACACTAAGA GCCTGTTTGG CTCAGCTTAA AAGCTGGTCA 25274 .......... .......... .......... .......... .......... .......... 476 AACTGACTTA AAAGCTGGTT TTTGACTTAT TTAGTTGTTT GGCAATACTC AAAATAACTT 25214 .......... .......... .......... .......... .......... .......... 476 ACTTTAAGTT AAAAAAAACT TATTTTAAGC CAAAAGTTAA AAACTGGGGT AGGGGTGTTT 25154 .......... .......... .......... .......... .......... .......... 476 TTTTTTTTTA GCTTATAAGC TGTTTTAAGT TGACCACATT TTTATCTTTT TGCCATTAAT 25094 .......... .......... .......... .......... .......... .......... 476 ATTTTTATGC AATCTCCAAA TTACTCATAT AACTCTAACA TCTCTTTCTT CCATTTTTCC 25034 .......... .......... .......... .......... .......... .......... 476 CTTTTCACGT TTGATATAAC AACTTCAGCA CTTTTATCCA AACGCATAAC TGCTTATTTT 24974 .......... .......... .......... .......... .......... .......... 476 AAAAATAAAT TTCAACACTT CTAAAAGTAA TTTTTTAAAG CTGCTTTTAT TAAGCCCATC 24914 .......... .......... .......... .......... .......... .......... 476 CAAACGGATC CTAAGTCCGT ATTGTTGATT TAACCAAGAT TGTGCCACCC TCTTAATACA 24854 .......... .......... .......... .......... .......... .......... 476 ACCAAAGAGA GAAAAAAGAT AACCTGGTCG GCCCAAAAGT GACCAGACCA GGTCAATCAT 24794 .......... .......... .......... .......... .......... .......... 476 TATACATATA TTTTTGAAAT TTACTATTTT CTAAAAGTAC AATATAATTA AAAAACGTAT 24734 .......... .......... .......... .......... .......... .......... 476 ACAATTTATC AGTTGTTATT TTCTTAATTT GTCTAATTCT CTTTAATTTG AAAGGGCAAC 24674 .......... .......... .......... .......... .......... .......... 476 TTTCACATAT AGGAAATAAA ATATTTATAT TTGTATGCTA TAGCAAATTT TGTATAATTG 24614 .......... .......... .......... .......... .......... .......... 476 CGCTCCATAG CAAACATAAA ACTGTATAAT TCGCTATACA TATACAAGTG TATAGTTCGC 24554 .......... .......... .......... .......... .......... .......... 476 TGGCCTAAAT TGTATAATTC GCTGGCCTAT TTCGCTGCAA TAGTATAATT CGTTATCCTA 24494 .......... .......... .......... .......... .......... .......... 476 TTTCACTGCA ATTGTATAAT GCACGATTAT ATAATTAACT GCCTATTTCG CTGCAATATT 24434 .......... .......... .......... .......... .......... .......... 476 AAGTGTATAG CAAGAAGATA TATGTTTTTC TCTCGCTTTA TACAAAAACA GAAACACAAT 24374 .......... .......... .......... .......... .......... .......... 476 ATACACACTT CTGTTGTATA AAGCTAGAGA AAATTGTATT TTACTGCAAT TGTATAATTC 24314 .......... .......... .......... .......... .......... .......... 476 ACAATTGTAT AATTCTTTGA CCTTTTTCTC TGCAATATTT GAAGTAAAAT GTTTGTAAAT 24254 .......... .......... .......... .......... .......... .......... 476 TGTATAATTA AGTGTATAAC ACGAAGATAT AGATTTTTGC ATGTGTATAT ACAATTTTCT 24194 .......... .......... .......... .......... .......... .......... 476 CTCGCTTTAT ACAAAACAGA AACATAATTA TACACTTCTG TGTATAAAGC GAGAGAGGCG 24134 .......... .......... .......... .......... .......... .......... 476 AGCGAGAATG GAGAGTGGCG AGCGAGATTT CTGGGAGAGA GGCGCTGGCA AATTTTAGCT 24074 .......... .......... .......... .......... .......... .......... 476 AACGTTTGCT ATGGAGCACA ATTAAATCAA ACCCTAACTA TTCCATTTAT TTTAGGTTGT 24014 .......... .......... .......... .......... .......... .......... 476 TAGTTTGCTA TTATATACAA TTTTCCCAAT TTGAAATCAA TAATGTTTGA GTATTGATTC 23954 .......... .......... .......... .......... .......... .......... 476 TATAAGAATA TCTTCAATTA TTTGGTATCT TCTTAGATAT TTCAAGCTTA AACTAATTAA 23894 .......... .......... .......... .......... .......... .......... 476 ATTTATCGAA TAATTAAATT TTAAAAGACG TAATCTTAAC TTTAAATGTG ATCTAAAGTG 23834 .......... .......... .......... .......... .......... .......... 476 TAACGATCAC TTCTTTCGAG TTTTTGGCCA AAATCATTTT TAAACTATAC CTCAGACTCA 23774 .......... .......... .......... .......... .......... .......... 476 AACTACATCC TTAAAGTATC ATTCTTACCA TGAAACATCC TTAAAGTATT TTAAAGTTAA 23714 .......... .......... .......... .......... .......... .......... 476 TAATTTTCAT CCTTCTACTT GAATTTATCA TAAAACTAAT TGATATATCC TACAAAATTT 23654 ||| .......... .......... .......... .......... .......... .......TTT 479 AAGTTGTCCC TTCCTAATTA TTATTCTTA 23625 | ||| | || | | ||| || ||||| ||| ATGTTCTTCC TACTTAAATA TTATTATTA 508 hqPGS_C04HBa0077O05.1-_SGN-E396038- (27489 27014,23656 23625) ******************************************************************************** EST sequence 97 -strand 525 n (File: SGN-E396069-) 1 AAAGTAGGAA TAGTCCAAAA CGTCCCTTAA AACGTGTAAA GAAATCCGAC CCCCACCGGG 61 ATTACGCAAC CTGTGATGGC CCGTCGTGCC TGCGACGGTC CGTCCTGCAG GTCGTCGCAA 121 GGTTCAGAGA CTCAATTTCC ACCAAAGAGT CTGTGACGGT CCGTCACGCC CGTGACGGTC 181 CGTCGTGCCA TTCCGTTACG AAGTTCAGAG AGTCGATTTT TAGTACCCAA TTTCAGAATT 241 TCTAAGTGTT TTGAAACGAG ACTCCTCGAC GGTCCATCGT GCTCATGACG GTCCGTCGTG 301 GGTTCCGTCG TCTCAACCTG TTTTTCCAAA AATAAAATCT GCTACTCAAA ACGACTAAAC 361 AGGTCGTTAC ATTTATGTTC TTCCTACTTA AATATTATTA TTATTTTACG ATTTATAACA 421 CTATTAGAAA CAAAGATTTT CTCAACCATG AATTAATGAA AAAATTATGC CATAAAATAT 481 AAAAAATTTA CTCATTTTTC ATTGAGCTAA TTCATAAAAA AAAAA Predicted gene structure (within gDNA segment 28768 to 22780): Exon 1 27383 27014 ( 370 n); cDNA 1 371 ( 371 n); score: 0.854 Intron 1 27013 23657 (3357 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 23656 23625 ( 32 n); cDNA 372 403 ( 32 n); score: 0.781 PPA cDNA 514 525 MATCH C04HBa0077O05.1- SGN-E396069- 0.854 402 0.766 C PGS_C04HBa0077O05.1-_SGN-E396069- (27383 27014,23656 23625) Alignment (genomic DNA sequence = upper lines): AAAACAGGAA TAGTCAAAAA CTTCCTTTAA AACAT-TAAA GAAATCCGAC TCAGCCTGGG 27325 ||| ||||| ||||| |||| | ||| |||| ||| | |||| |||||||||| | | ||| AAAGTAGGAA TAGTCCAAAA CGTCCCTTAA AACGTGTAAA GAAATCCGAC CCCCACCGGG 60 ATTACGCAGC CTGTGACGGC CTGTCATGCC TGCGACGGTC CGTCCTGCTG CTCCGTCACA 27265 |||||||| | |||||| ||| | ||| |||| |||||||||| |||||||| | | |||| || ATTACGCAAC CTGTGATGGC CCGTCGTGCC TGCGACGGTC CGTCCTGCAG GT-CGTCGCA 119 GAGTTCAGAG ACTCAA-TTC CCTTAAAGAG TCTGTGACGG TCCGTCACGC CTGTGACGGT 27206 |||||||| |||||| ||| | |||||| |||||||||| |||||||||| | |||||||| AGGTTCAGAG ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT 179 CCGTCCTGCC ATTCCGTTAC GAAGTTTAGA GAGTCGA-TT TCAGTACCCA TTTTTCAGAA 27147 ||||| |||| |||||||||| |||||| ||| ||||||| || | |||||||| |||||||| CCGTCGTGCC ATTCCGTTAC GAAGTTCAGA GAGTCGATTT TTAGTACCCA -ATTTCAGAA 238 TTTCAAAGTG TTTTGAAACG AGACCCCCTC GACGGTCCGT CGTGCCCATG ACGGTCCGTC 27087 |||| ||||| |||||||||| ||| | |||| |||||||| | ||||| |||| |||||||||| TTTCTAAGTG TTTTGAAACG AGA-CTCCTC GACGGTCCAT CGTGCTCATG ACGGTCCGTC 297 GTGGAATCCG TCGTCTCAGC CAG-TTTTCC AGAAATAACA TCTCTTGCTC AAAACGACTA 27028 |||| |||| |||||||| | | | |||||| | |||||| | ||| | ||| |||||||||| GTGGGTTCCG TCGTCTCAAC CTGTTTTTCC AAAAATAAAA TCTGCTACTC AAAACGACTA 357 AACAGGTCGT TACAATAAAT ATTAGGTATA ATAGATAAAT TTATCATTTT ACCTGATCTT 26968 |||||||||| |||| AACAGGTCGT TACA...... .......... .......... .......... .......... 371 ATTTCACATG TATGTCATCT ATTTTTAGGT GTGTATAAAT AGATATTTAA ATTAAATTTG 26908 .......... .......... .......... .......... .......... .......... 371 TATAAAGTTG AAGTAGACAC TGAATTCTAC GAGACATAAT ACAAGTAAGA GATCTAGGAC 26848 .......... .......... .......... .......... .......... .......... 371 GCAAATTGTC ATGTAAGATG ACACGCAAAA ATGTGTGTAT TTATTTATTC AACGAATTTA 26788 .......... .......... .......... .......... .......... .......... 371 TAGAAATATA AGTATCTACT CGTGCACACT CAAAAATAAA GAATATAAAT ATAAGTGATA 26728 .......... .......... .......... .......... .......... .......... 371 AGAGCATATT TATATATTAT GTCTAACTAT TAATTTGATG TCCGTTGATC ACATAAAAAT 26668 .......... .......... .......... .......... .......... .......... 371 TGAACCAAAT GAATCATTTC CTACTTATTC TTAATATACT TAAATTAGTT ATCTTCCATT 26608 .......... .......... .......... .......... .......... .......... 371 ATAACATATA CAATTCATTC ATTATTCGTA ACTATCCTTT GTAAATATAG GTGCATCGTA 26548 .......... .......... .......... .......... .......... .......... 371 TGTTTAATAT ATGGATGAAA TATTAATGAA GATGTATAAA TTTTATACGA GAGTTATACC 26488 .......... .......... .......... .......... .......... .......... 371 ATTAAAATTA AAATTTATAA TGCTTGGTAT AAAATTATAC CAAGAAAAAT GTTTTGCATG 26428 .......... .......... .......... .......... .......... .......... 371 AATATCATCT TAAACAAAAC AACACACAAA TATGCAATTC GAATGTGCAT AGAACCAAAT 26368 .......... .......... .......... .......... .......... .......... 371 ATCCCATAAA TTTAAGGTCA ATGAGCTAGA GTTCACCCAG GCAAGCAGCC TTATTTCCCC 26308 .......... .......... .......... .......... .......... .......... 371 CCCCAAATTT AGGCCTTATT TTTTTTCTTT AAGATTAACA TGTCTGAATT TGAATAAACA 26248 .......... .......... .......... .......... .......... .......... 371 TTTGAATAAT TTTGTGTCTA AGTTTAAACA TTAAATGATT AATATTATTT ATTTTTTATC 26188 .......... .......... .......... .......... .......... .......... 371 ATCTGAATAT GAGTAATTAT TTATAATTAA ACATTATAAA TATATAATTT AAAATAAGAA 26128 .......... .......... .......... .......... .......... .......... 371 AGTAATTAAC CATCGTTTTT TTTTTTCTCA AAGCATATTT AAAAAGAGGA GGTTGTTCGA 26068 .......... .......... .......... .......... .......... .......... 371 TTTTGTAACT ACACAATTAA GAATAAAACG GTACTTGCCG ATGATAAAAT ATCTACTTTG 26008 .......... .......... .......... .......... .......... .......... 371 AATGCTCTTC TTTCAAAAAT TAGTGTGTAT AATGAATTTT TTTTAAAAAA AAGATATATT 25948 .......... .......... .......... .......... .......... .......... 371 TACATTAGAT ATGATGCAGT TAAACAGTTA TTGAAACATG AGGTTATTTT CTTAGAATGT 25888 .......... .......... .......... .......... .......... .......... 371 GTAAGGTCCT AAAAGTTATT TGTAATCTTT TAACTAAGGA ATTTGACTTG AAAATGAATA 25828 .......... .......... .......... .......... .......... .......... 371 AATGGTCTTT ACCTCGAAGG AGATGAAACG GGATGGTGCT AAAGCCCATT GATTGAGATA 25768 .......... .......... .......... .......... .......... .......... 371 ATATGACACA AGGCCATATT TTTTGATGCA GATAGTAGGG GCGATTCAAC TCTAAAGCCA 25708 .......... .......... .......... .......... .......... .......... 371 CTAAAGTAAT GACTTTAGGC TTCCAAAATA TAACGCCTCA AATTTATTTA ATGTTACAGA 25648 .......... .......... .......... .......... .......... .......... 371 TATACAAATA TAAATATACT TATAATTATG TATCTATAAT TAGTATTAAT TGAAATTTTC 25588 .......... .......... .......... .......... .......... .......... 371 TTAATAGTTT CTAATCATGG GCGAATCCAC ATGTAAAGGT GGGGTGTACG TCCACTCGTT 25528 .......... .......... .......... .......... .......... .......... 371 AACTTCGAAA AATCATGTAT AAATATATAT ATATTGAGAA ACTGATAAGG AAAAAAAATA 25468 .......... .......... .......... .......... .......... .......... 371 TAATAAAAAA TGCAACCTTA ATGAACATTG AACTGGTCTT GATTTGCTGA TAGAAATAAG 25408 .......... .......... .......... .......... .......... .......... 371 AAAATACCTC CTTGCAGACC TAGATTTCAA TCCTGATCAA TAAGTCACTA TCCTATTCAA 25348 .......... .......... .......... .......... .......... .......... 371 ATCTTGGCTT CGCCTATATT TTGTGTTAAA TTTGAACACT AAGAGCCTGT TTGGCTCAGC 25288 .......... .......... .......... .......... .......... .......... 371 TTAAAAGCTG GTCAAACTGA CTTAAAAGCT GGTTTTTGAC TTATTTAGTT GTTTGGCAAT 25228 .......... .......... .......... .......... .......... .......... 371 ACTCAAAATA ACTTACTTTA AGTTAAAAAA AACTTATTTT AAGCCAAAAG TTAAAAACTG 25168 .......... .......... .......... .......... .......... .......... 371 GGGTAGGGGT GTTTTTTTTT TTTAGCTTAT AAGCTGTTTT AAGTTGACCA CATTTTTATC 25108 .......... .......... .......... .......... .......... .......... 371 TTTTTGCCAT TAATATTTTT ATGCAATCTC CAAATTACTC ATATAACTCT AACATCTCTT 25048 .......... .......... .......... .......... .......... .......... 371 TCTTCCATTT TTCCCTTTTC ACGTTTGATA TAACAACTTC AGCACTTTTA TCCAAACGCA 24988 .......... .......... .......... .......... .......... .......... 371 TAACTGCTTA TTTTAAAAAT AAATTTCAAC ACTTCTAAAA GTAATTTTTT AAAGCTGCTT 24928 .......... .......... .......... .......... .......... .......... 371 TTATTAAGCC CATCCAAACG GATCCTAAGT CCGTATTGTT GATTTAACCA AGATTGTGCC 24868 .......... .......... .......... .......... .......... .......... 371 ACCCTCTTAA TACAACCAAA GAGAGAAAAA AGATAACCTG GTCGGCCCAA AAGTGACCAG 24808 .......... .......... .......... .......... .......... .......... 371 ACCAGGTCAA TCATTATACA TATATTTTTG AAATTTACTA TTTTCTAAAA GTACAATATA 24748 .......... .......... .......... .......... .......... .......... 371 ATTAAAAAAC GTATACAATT TATCAGTTGT TATTTTCTTA ATTTGTCTAA TTCTCTTTAA 24688 .......... .......... .......... .......... .......... .......... 371 TTTGAAAGGG CAACTTTCAC ATATAGGAAA TAAAATATTT ATATTTGTAT GCTATAGCAA 24628 .......... .......... .......... .......... .......... .......... 371 ATTTTGTATA ATTGCGCTCC ATAGCAAACA TAAAACTGTA TAATTCGCTA TACATATACA 24568 .......... .......... .......... .......... .......... .......... 371 AGTGTATAGT TCGCTGGCCT AAATTGTATA ATTCGCTGGC CTATTTCGCT GCAATAGTAT 24508 .......... .......... .......... .......... .......... .......... 371 AATTCGTTAT CCTATTTCAC TGCAATTGTA TAATGCACGA TTATATAATT AACTGCCTAT 24448 .......... .......... .......... .......... .......... .......... 371 TTCGCTGCAA TATTAAGTGT ATAGCAAGAA GATATATGTT TTTCTCTCGC TTTATACAAA 24388 .......... .......... .......... .......... .......... .......... 371 AACAGAAACA CAATATACAC ACTTCTGTTG TATAAAGCTA GAGAAAATTG TATTTTACTG 24328 .......... .......... .......... .......... .......... .......... 371 CAATTGTATA ATTCACAATT GTATAATTCT TTGACCTTTT TCTCTGCAAT ATTTGAAGTA 24268 .......... .......... .......... .......... .......... .......... 371 AAATGTTTGT AAATTGTATA ATTAAGTGTA TAACACGAAG ATATAGATTT TTGCATGTGT 24208 .......... .......... .......... .......... .......... .......... 371 ATATACAATT TTCTCTCGCT TTATACAAAA CAGAAACATA ATTATACACT TCTGTGTATA 24148 .......... .......... .......... .......... .......... .......... 371 AAGCGAGAGA GGCGAGCGAG AATGGAGAGT GGCGAGCGAG ATTTCTGGGA GAGAGGCGCT 24088 .......... .......... .......... .......... .......... .......... 371 GGCAAATTTT AGCTAACGTT TGCTATGGAG CACAATTAAA TCAAACCCTA ACTATTCCAT 24028 .......... .......... .......... .......... .......... .......... 371 TTATTTTAGG TTGTTAGTTT GCTATTATAT ACAATTTTCC CAATTTGAAA TCAATAATGT 23968 .......... .......... .......... .......... .......... .......... 371 TTGAGTATTG ATTCTATAAG AATATCTTCA ATTATTTGGT ATCTTCTTAG ATATTTCAAG 23908 .......... .......... .......... .......... .......... .......... 371 CTTAAACTAA TTAAATTTAT CGAATAATTA AATTTTAAAA GACGTAATCT TAACTTTAAA 23848 .......... .......... .......... .......... .......... .......... 371 TGTGATCTAA AGTGTAACGA TCACTTCTTT CGAGTTTTTG GCCAAAATCA TTTTTAAACT 23788 .......... .......... .......... .......... .......... .......... 371 ATACCTCAGA CTCAAACTAC ATCCTTAAAG TATCATTCTT ACCATGAAAC ATCCTTAAAG 23728 .......... .......... .......... .......... .......... .......... 371 TATTTTAAAG TTAATAATTT TCATCCTTCT ACTTGAATTT ATCATAAAAC TAATTGATAT 23668 .......... .......... .......... .......... .......... .......... 371 ATCCTACAAA ATTTAAGTTG TCCCTTCCTA ATTATTATTC TTA 23625 |||| ||| | ||| | || | ||||||| ||| .......... .TTTATGTTC TTCCTACTTA AATATTATTA TTA 403 hqPGS_C04HBa0077O05.1-_SGN-E396069- (27383 27014,23656 23625) ******************************************************************************** EST sequence 74 -strand 519 n (File: SGN-E374998-) 1 GGAATAGTAC ATAACGTCCC TTAAAACGTG TAAAAGAAAT CCGACCCAGA CTGGGATTAC 61 GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT CGCAAGGTTC 121 AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA CGGTCCGTCG 181 TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA GAATTTCTAA 241 GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG TCGTGGGTTC 301 CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC TAAACAGGTC 361 GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA TAACACTATT 421 AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA AATATAAAAA 481 ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAA Predicted gene structure (within gDNA segment 28718 to 22790): Exon 1 27377 27014 ( 364 n); cDNA 1 366 ( 366 n); score: 0.853 Intron 1 27013 23657 (3357 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 23656 23625 ( 32 n); cDNA 367 398 ( 32 n); score: 0.781 PPA cDNA 509 519 MATCH C04HBa0077O05.1- SGN-E374998- 0.853 396 0.763 C PGS_C04HBa0077O05.1-_SGN-E374998- (27377 27014,23656 23625) Alignment (genomic DNA sequence = upper lines): GGAATAGTCA AAAACTTCCT TTAAAACAT- TA-AAGAAAT CCGACTCAGC CTGGGATTAC 27320 |||||||| | ||| ||| ||||||| | || ||||||| ||||| ||| |||||||||| GGAATAGTAC ATAACGTCCC TTAAAACGTG TAAAAGAAAT CCGACCCAGA CTGGGATTAC 60 GCAGCCTGTG ACGGCCTGTC ATGCCTGCGA CGGTCCGTCC TGCTGCTCCG TCACAGAGTT 27260 ||| |||||| | |||| ||| ||||||||| |||||||||| ||| | || | || || ||| GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTC-G TCGCAAGGTT 119 CAGAGACTCA A-TTCCCTTA AAGAGTCTGT GACGGTCCGT CACGCCTGTG ACGGTCCGTC 27201 |||||||||| | |||| | |||||||||| |||||||||| |||||| ||| |||||||||| CAGAGACTCA ATTTCCACCA AAGAGTCTGT GACGGTCCGT CACGCCCGTG ACGGTCCGTC 179 CTGCCATTCC GTTACGAAGT TTAGAGAGTC GA-TTTCAGT ACCCATTTTT CAGAATTTCA 27142 ||||||||| |||||||||| | |||||||| || ||| ||| ||||| ||| ||||||||| GTGCCATTCC GTTACGAAGT TCAGAGAGTC GATTTTTAGT ACCCA-ATTT CAGAATTTCT 238 AAGTGTTTTG AAACGAGACC CCCTCGACGG TCCGTCGTGC CCATGACGGT CCGTCGTGGA 27082 |||||||||| |||||||| | ||||||||| ||| |||||| ||||||||| ||||||||| AAGTGTTTTG AAACGAGA-C TCCTCGACGG TCCATCGTGC TCATGACGGT CCGTCGTGGG 297 ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA TAACATCTCT TGCTCAAAAC GACTAAACAG 27023 ||||||||| ||| || | | |||||| ||| ||| |||| | |||||||| |||||||||| TTCCGTCGTC TCAACCTGTT TTTCCAAAAA TAAAATCTGC TACTCAAAAC GACTAAACAG 357 GTCGTTACAA TAAATATTAG GTATAATAGA TAAATTTATC ATTTTACCTG ATCTTATTTC 26963 ||||||||| GTCGTTACA. .......... .......... .......... .......... .......... 366 ACATGTATGT CATCTATTTT TAGGTGTGTA TAAATAGATA TTTAAATTAA ATTTGTATAA 26903 .......... .......... .......... .......... .......... .......... 366 AGTTGAAGTA GACACTGAAT TCTACGAGAC ATAATACAAG TAAGAGATCT AGGACGCAAA 26843 .......... .......... .......... .......... .......... .......... 366 TTGTCATGTA AGATGACACG CAAAAATGTG TGTATTTATT TATTCAACGA ATTTATAGAA 26783 .......... .......... .......... .......... .......... .......... 366 ATATAAGTAT CTACTCGTGC ACACTCAAAA ATAAAGAATA TAAATATAAG TGATAAGAGC 26723 .......... .......... .......... .......... .......... .......... 366 ATATTTATAT ATTATGTCTA ACTATTAATT TGATGTCCGT TGATCACATA AAAATTGAAC 26663 .......... .......... .......... .......... .......... .......... 366 CAAATGAATC ATTTCCTACT TATTCTTAAT ATACTTAAAT TAGTTATCTT CCATTATAAC 26603 .......... .......... .......... .......... .......... .......... 366 ATATACAATT CATTCATTAT TCGTAACTAT CCTTTGTAAA TATAGGTGCA TCGTATGTTT 26543 .......... .......... .......... .......... .......... .......... 366 AATATATGGA TGAAATATTA ATGAAGATGT ATAAATTTTA TACGAGAGTT ATACCATTAA 26483 .......... .......... .......... .......... .......... .......... 366 AATTAAAATT TATAATGCTT GGTATAAAAT TATACCAAGA AAAATGTTTT GCATGAATAT 26423 .......... .......... .......... .......... .......... .......... 366 CATCTTAAAC AAAACAACAC ACAAATATGC AATTCGAATG TGCATAGAAC CAAATATCCC 26363 .......... .......... .......... .......... .......... .......... 366 ATAAATTTAA GGTCAATGAG CTAGAGTTCA CCCAGGCAAG CAGCCTTATT TCCCCCCCCA 26303 .......... .......... .......... .......... .......... .......... 366 AATTTAGGCC TTATTTTTTT TCTTTAAGAT TAACATGTCT GAATTTGAAT AAACATTTGA 26243 .......... .......... .......... .......... .......... .......... 366 ATAATTTTGT GTCTAAGTTT AAACATTAAA TGATTAATAT TATTTATTTT TTATCATCTG 26183 .......... .......... .......... .......... .......... .......... 366 AATATGAGTA ATTATTTATA ATTAAACATT ATAAATATAT AATTTAAAAT AAGAAAGTAA 26123 .......... .......... .......... .......... .......... .......... 366 TTAACCATCG TTTTTTTTTT TCTCAAAGCA TATTTAAAAA GAGGAGGTTG TTCGATTTTG 26063 .......... .......... .......... .......... .......... .......... 366 TAACTACACA ATTAAGAATA AAACGGTACT TGCCGATGAT AAAATATCTA CTTTGAATGC 26003 .......... .......... .......... .......... .......... .......... 366 TCTTCTTTCA AAAATTAGTG TGTATAATGA ATTTTTTTTA AAAAAAAGAT ATATTTACAT 25943 .......... .......... .......... .......... .......... .......... 366 TAGATATGAT GCAGTTAAAC AGTTATTGAA ACATGAGGTT ATTTTCTTAG AATGTGTAAG 25883 .......... .......... .......... .......... .......... .......... 366 GTCCTAAAAG TTATTTGTAA TCTTTTAACT AAGGAATTTG ACTTGAAAAT GAATAAATGG 25823 .......... .......... .......... .......... .......... .......... 366 TCTTTACCTC GAAGGAGATG AAACGGGATG GTGCTAAAGC CCATTGATTG AGATAATATG 25763 .......... .......... .......... .......... .......... .......... 366 ACACAAGGCC ATATTTTTTG ATGCAGATAG TAGGGGCGAT TCAACTCTAA AGCCACTAAA 25703 .......... .......... .......... .......... .......... .......... 366 GTAATGACTT TAGGCTTCCA AAATATAACG CCTCAAATTT ATTTAATGTT ACAGATATAC 25643 .......... .......... .......... .......... .......... .......... 366 AAATATAAAT ATACTTATAA TTATGTATCT ATAATTAGTA TTAATTGAAA TTTTCTTAAT 25583 .......... .......... .......... .......... .......... .......... 366 AGTTTCTAAT CATGGGCGAA TCCACATGTA AAGGTGGGGT GTACGTCCAC TCGTTAACTT 25523 .......... .......... .......... .......... .......... .......... 366 CGAAAAATCA TGTATAAATA TATATATATT GAGAAACTGA TAAGGAAAAA AAATATAATA 25463 .......... .......... .......... .......... .......... .......... 366 AAAAATGCAA CCTTAATGAA CATTGAACTG GTCTTGATTT GCTGATAGAA ATAAGAAAAT 25403 .......... .......... .......... .......... .......... .......... 366 ACCTCCTTGC AGACCTAGAT TTCAATCCTG ATCAATAAGT CACTATCCTA TTCAAATCTT 25343 .......... .......... .......... .......... .......... .......... 366 GGCTTCGCCT ATATTTTGTG TTAAATTTGA ACACTAAGAG CCTGTTTGGC TCAGCTTAAA 25283 .......... .......... .......... .......... .......... .......... 366 AGCTGGTCAA ACTGACTTAA AAGCTGGTTT TTGACTTATT TAGTTGTTTG GCAATACTCA 25223 .......... .......... .......... .......... .......... .......... 366 AAATAACTTA CTTTAAGTTA AAAAAAACTT ATTTTAAGCC AAAAGTTAAA AACTGGGGTA 25163 .......... .......... .......... .......... .......... .......... 366 GGGGTGTTTT TTTTTTTTAG CTTATAAGCT GTTTTAAGTT GACCACATTT TTATCTTTTT 25103 .......... .......... .......... .......... .......... .......... 366 GCCATTAATA TTTTTATGCA ATCTCCAAAT TACTCATATA ACTCTAACAT CTCTTTCTTC 25043 .......... .......... .......... .......... .......... .......... 366 CATTTTTCCC TTTTCACGTT TGATATAACA ACTTCAGCAC TTTTATCCAA ACGCATAACT 24983 .......... .......... .......... .......... .......... .......... 366 GCTTATTTTA AAAATAAATT TCAACACTTC TAAAAGTAAT TTTTTAAAGC TGCTTTTATT 24923 .......... .......... .......... .......... .......... .......... 366 AAGCCCATCC AAACGGATCC TAAGTCCGTA TTGTTGATTT AACCAAGATT GTGCCACCCT 24863 .......... .......... .......... .......... .......... .......... 366 CTTAATACAA CCAAAGAGAG AAAAAAGATA ACCTGGTCGG CCCAAAAGTG ACCAGACCAG 24803 .......... .......... .......... .......... .......... .......... 366 GTCAATCATT ATACATATAT TTTTGAAATT TACTATTTTC TAAAAGTACA ATATAATTAA 24743 .......... .......... .......... .......... .......... .......... 366 AAAACGTATA CAATTTATCA GTTGTTATTT TCTTAATTTG TCTAATTCTC TTTAATTTGA 24683 .......... .......... .......... .......... .......... .......... 366 AAGGGCAACT TTCACATATA GGAAATAAAA TATTTATATT TGTATGCTAT AGCAAATTTT 24623 .......... .......... .......... .......... .......... .......... 366 GTATAATTGC GCTCCATAGC AAACATAAAA CTGTATAATT CGCTATACAT ATACAAGTGT 24563 .......... .......... .......... .......... .......... .......... 366 ATAGTTCGCT GGCCTAAATT GTATAATTCG CTGGCCTATT TCGCTGCAAT AGTATAATTC 24503 .......... .......... .......... .......... .......... .......... 366 GTTATCCTAT TTCACTGCAA TTGTATAATG CACGATTATA TAATTAACTG CCTATTTCGC 24443 .......... .......... .......... .......... .......... .......... 366 TGCAATATTA AGTGTATAGC AAGAAGATAT ATGTTTTTCT CTCGCTTTAT ACAAAAACAG 24383 .......... .......... .......... .......... .......... .......... 366 AAACACAATA TACACACTTC TGTTGTATAA AGCTAGAGAA AATTGTATTT TACTGCAATT 24323 .......... .......... .......... .......... .......... .......... 366 GTATAATTCA CAATTGTATA ATTCTTTGAC CTTTTTCTCT GCAATATTTG AAGTAAAATG 24263 .......... .......... .......... .......... .......... .......... 366 TTTGTAAATT GTATAATTAA GTGTATAACA CGAAGATATA GATTTTTGCA TGTGTATATA 24203 .......... .......... .......... .......... .......... .......... 366 CAATTTTCTC TCGCTTTATA CAAAACAGAA ACATAATTAT ACACTTCTGT GTATAAAGCG 24143 .......... .......... .......... .......... .......... .......... 366 AGAGAGGCGA GCGAGAATGG AGAGTGGCGA GCGAGATTTC TGGGAGAGAG GCGCTGGCAA 24083 .......... .......... .......... .......... .......... .......... 366 ATTTTAGCTA ACGTTTGCTA TGGAGCACAA TTAAATCAAA CCCTAACTAT TCCATTTATT 24023 .......... .......... .......... .......... .......... .......... 366 TTAGGTTGTT AGTTTGCTAT TATATACAAT TTTCCCAATT TGAAATCAAT AATGTTTGAG 23963 .......... .......... .......... .......... .......... .......... 366 TATTGATTCT ATAAGAATAT CTTCAATTAT TTGGTATCTT CTTAGATATT TCAAGCTTAA 23903 .......... .......... .......... .......... .......... .......... 366 ACTAATTAAA TTTATCGAAT AATTAAATTT TAAAAGACGT AATCTTAACT TTAAATGTGA 23843 .......... .......... .......... .......... .......... .......... 366 TCTAAAGTGT AACGATCACT TCTTTCGAGT TTTTGGCCAA AATCATTTTT AAACTATACC 23783 .......... .......... .......... .......... .......... .......... 366 TCAGACTCAA ACTACATCCT TAAAGTATCA TTCTTACCAT GAAACATCCT TAAAGTATTT 23723 .......... .......... .......... .......... .......... .......... 366 TAAAGTTAAT AATTTTCATC CTTCTACTTG AATTTATCAT AAAACTAATT GATATATCCT 23663 .......... .......... .......... .......... .......... .......... 366 ACAAAATTTA AGTTGTCCCT TCCTAATTAT TATTCTTA 23625 |||| ||| | ||| | ||| ||| |||| ||| ......TTTA TGTTCTTCCT ACTTAAATAT TATTATTA 398 hqPGS_C04HBa0077O05.1-_SGN-E374998- (27377 27014,23656 23625) ******************************************************************************** EST sequence 153 -strand 666 n (File: SGN-E371327-) 1 AGGGTTGTGT TGACTCAAAT TCCAAGGGTG TGGATAGTGT ACATGGTTCA AGTGATGCTG 61 TTGAAGCTGC TAAGTCCATC GCTCAACAAA GTGGTAGTGT AGTCGCTGTT TCTGGAGCTG 121 TTGACTATAT CACAGACGGT GATAGGGTTG TTTGTGTTCA CAATGGGGTG CCTATGTTGC 181 AAAAGATTAC TGCATCTGGA TGTTCAGTCA CTGCCCTCAT TGCTGCCTTT GTCGCTGTTG 241 ATCCATCCCA TGCTGTGGAA GCAACAGCTT CTGCATTGGC TATATTTGGT GTCGCAAGTG 301 AAACAGGGAT GGACATGGCT AGAGGTCCAG CTTCACTGCG GACACTGTTG ATTGATTCGT 361 TATATGGACT TGGGGAAGCT ACTGCACTTA GTCGAGTAAG AATCAACCAC CTTTAATGCT 421 TTTAGACGAG AAATCAATGT GTCCATTTCA TTTAAATCTA ACTCTCATTT ATTTTTGGGC 481 AACTTTTTTC ACATACAGCA AACAAAAAAT TCATATTTGT ATGCTATAGC AAACTTCGCA 541 TAATTGCGTT CCATAGCAAA CATAAAATTG TATAATTCGC TATACATATA CAATTGTATA 601 ATTCGCTATC CTATTTCACT GCAATTGTAT AATGCACAAT TGTATAATTC GCTGCCTAAA 661 AAAAAA Predicted gene structure (within gDNA segment 30377 to 23539): Exon 1 24673 24565 ( 109 n); cDNA 487 595 ( 109 n); score: 0.899 Intron 1 24564 24512 ( 53 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0.94) Exon 2 24511 24449 ( 63 n); cDNA 596 658 ( 63 n); score: 0.921 Intron 2 24448 24175 ( 274 n); Pd: 0.000 (s: 0.92), Pa: 0.961 (s: 0) Exon 3 24174 24167 ( 8 n); cDNA 659 666 ( 8 n); score: 0.750 MATCH C04HBa0077O05.1- SGN-E371327- 0.907 180 0.270 C PGS_C04HBa0077O05.1-_SGN-E371327- (24673 24565,24511 24449,24174 24167) Alignment (genomic DNA sequence = upper lines): TTTCACATAT AGGAAATAAA ATATTTATAT TTGTATGCTA TAGCAAATTT TGTATAATTG 24614 ||||||||| || ||| ||| | ||| |||| |||||||||| ||||||| || | ||||||| TTTCACATAC AGCAAACAAA AAATTCATAT TTGTATGCTA TAGCAAACTT CGCATAATTG 546 CGCTCCATAG CAAACATAAA ACTGTATAAT TCGCTATACA TATACAAGTG TATAGTTCGC 24554 || ||||||| |||||||||| | |||||||| |||||||||| ||||||| | CGTTCCATAG CAAACATAAA ATTGTATAAT TCGCTATACA TATACAATT. .......... 595 TGGCCTAAAT TGTATAATTC GCTGGCCTAT TTCGCTGCAA TAGTATAATT CGTTATCCTA 24494 |||||||| || ||||||| .......... .......... .......... .......... ..GTATAATT CGCTATCCTA 613 TTTCACTGCA ATTGTATAAT GCACGATTAT ATAATTAACT GCCTATTTCG CTGCAATATT 24434 |||||||||| |||||||||| |||| ||| | |||||| || ||||| TTTCACTGCA ATTGTATAAT GCACAATTGT ATAATTCGCT GCCTA..... .......... 658 AAGTGTATAG CAAGAAGATA TATGTTTTTC TCTCGCTTTA TACAAAAACA GAAACACAAT 24374 .......... .......... .......... .......... .......... .......... 658 ATACACACTT CTGTTGTATA AAGCTAGAGA AAATTGTATT TTACTGCAAT TGTATAATTC 24314 .......... .......... .......... .......... .......... .......... 658 ACAATTGTAT AATTCTTTGA CCTTTTTCTC TGCAATATTT GAAGTAAAAT GTTTGTAAAT 24254 .......... .......... .......... .......... .......... .......... 658 TGTATAATTA AGTGTATAAC ACGAAGATAT AGATTTTTGC ATGTGTATAT ACAATTTTCT 24194 .......... .......... .......... .......... .......... .......... 658 CTCGCTTTAT ACAAAACAGA AACATAA 24167 | || | || .......... .........A AAAAAAA 666 hqPGS_C04HBa0077O05.1-_SGN-E371327- (24673 24565,24511 24449,24174 24167) ******************************************************************************** EST sequence 11 -strand 701 n (File: SGN-E578389-) 1 TCAAATAATT ATAATAAATA AGTCAAAAAA ATAATTTATG TATTAAAAAA ATTTGAAATA 61 TACCTTGAAC TTTGAAAAAA GAATCATATA TGCCCCTAAA TATATTTTTT TTTAAAATTA 121 AAGTAAAATT ATAAATTTAA AAGTAATTTT TTCACTTTCG TTAAATGAAG GGTATATATG 181 AGCTCATTTT GTAACGGCAG AGGTATATGT GAACCATTTG TATAACGGTA AGGGTATATA 241 TGAGCCACTT TCATAACGAG GGGTATATCA GTTTCAAATG ACAAAGTTGA GGGGTATATC 301 ATACCCTTTT CCCATAATAT TATTCATTTT TGGGTTGACG GGTCAAACCT TGGGCTGCTT 361 AGGACTTGAT TAGACCGCTA TTTTATTGAC TCTTTAATTA ATGGGCAACT TTCACATATA 421 ACAAACAAAA AATTCATATT TGTATGCTAT AACAAAGTTT GCATAATTGC GCTCCATAGC 481 AAACATAAAA TTGTATAATT CGCTGACCTA AATTGTATAA TTCGCTGGCC TATTTCGCTG 541 CAATTGTATA ATTCGCTATC CTATTTAACT ACAATTGTAT AATTCGCTGC CTATTTCGCT 601 GCAATATTAT TATAAAATTT GCTTTGCATA TAATTGAACC GAATTAAAAT GTATGTATAT 661 TGCATAATTA TAAGTGTATA GCAATAAGAT ATATGTTTTT C Predicted gene structure (within gDNA segment 29310 to 22343): Exon 1 24695 24582 ( 114 n); cDNA 390 501 ( 112 n); score: 0.895 Intron 1 24581 24552 ( 30 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.76) ?? Exon 2 24551 24474 ( 78 n); cDNA 502 583 ( 82 n); score: 0.821 Intron 2 24473 24301 ( 173 n); Pd: 0.647 (s: 0.92), Pa: 0.000 (s: 0) Exon 3 24300 24264 ( 37 n); cDNA 584 618 ( 35 n); score: 0.757 MATCH C04HBa0077O05.1- SGN-E578389- 0.865 229 0.327 C PGS_C04HBa0077O05.1-_SGN-E578389- (24695 24582,24551 24474,24300 24264) Alignment (genomic DNA sequence = upper lines): CTCTTTAATT TGAAAGGGCA ACTTTCACAT ATAGGAAATA AAATATTTAT ATTTGTATGC 24636 |||||||| | | || ||||| |||||||||| ||| ||| | ||| ||| || |||||||||| CTCTTTAA-T T-AATGGGCA ACTTTCACAT ATAACAAACA AAAAATTCAT ATTTGTATGC 447 TATAGCAAAT TTTGTATAAT TGCGCTCCAT AGCAAACATA AAACTGTATA ATTCGCTATA 24576 |||| |||| |||| ||||| |||||||||| |||||||||| ||| |||||| |||| TATAACAAAG TTTGCATAAT TGCGCTCCAT AGCAAACATA AAATTGTATA ATTC...... 501 CATATACAAG TGTATAGTTC GCTGG----C CTAAATTGTA TAATTCGCTG GCCTATTTCG 24520 | | |||||||||| |||||||||| |||||||||| .......... .......... ....GCTGAC CTAAATTGTA TAATTCGCTG GCCTATTTCG 537 CTGCAATAGT ATAATTCGTT ATCCTATTTC ACTGCAATTG TATAATGCAC GATTATATAA 24460 ||||||| || |||||||| | ||||||||| ||| |||||| |||||| CTGCAATTGT ATAATTCGCT ATCCTATTTA ACTACAATTG TATAAT.... .......... 583 TTAACTGCCT ATTTCGCTGC AATATTAAGT GTATAGCAAG AAGATATATG TTTTTCTCTC 24400 .......... .......... .......... .......... .......... .......... 583 GCTTTATACA AAAACAGAAA CACAATATAC ACACTTCTGT TGTATAAAGC TAGAGAAAAT 24340 .......... .......... .......... .......... .......... .......... 583 TGTATTTTAC TGCAATTGTA TAATTCACAA TTGTATAATT CTTTGACCTT TTTCTCTGCA 24280 | | || ||| |||| ||||| .......... .......... .......... .........T CGCTG-CCTA TTTCGCTGCA 603 ATATTTGAAG TAAAAT 24264 ||||| | |||||| ATATTATTA- TAAAAT 618 hqPGS_C04HBa0077O05.1-_SGN-E578389- (24695 24582,24551 24474,24300 24264) ******************************************************************************** EST sequence 22 -strand 750 n (File: SGN-E379112-) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ANCACAATAT ATACACTTCT GTTGTATAAA GTTAGAGAAA 121 ATTGTATTTC ACTGCAATTA TATAATTCAC AATTGTATAA TTCGTTGGCC TTTTTCTCTG 181 CAATATTTGA AGTAAAATGT TTGTAATTTG TATAATTAAG TGTATAACAC GAAGATATAT 241 ATTTTTACAT GTGTATATAC AATTTTCTCT CGCTTTATAC AAAATAGAAA CAGAATTTAT 301 ACACTTCTGT GTATATAGCG AGATAGGCGA GCGAGAATGG AGAGTGGCGA GCGAGATTTT 361 TGGGAGGGAG ACGCCTGACA AACTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA 421 ACTCTAGCTA CTCCATTTAG TTAGATTACT AGTTTGCTAT TATATACAAT TTTCCCAAGA 481 GCTTGTATAA AATGGAGAGA AGGAAAAAGA TTTAGAATTA TCGCTTGTGA ATGACAAGAA 541 AAGATTGCAA AATAAGAATT TAGTTGTTTT GCTTTAATAA GTTCCTTAAT CATTTCATTA 601 GGGGTGTAAT AATAGAATAA GAAAAGGGGC TTGAAATTCA GCTATAAACA ACCAGGGCAT 661 AGGTAACGTG TATACTTGAT GTTATAGGTG AGATTTCAGC TTCTCAATTT CGTCTAATTA 721 ACGGAATATA TATATATATA TATTCCCACA Predicted gene structure (within gDNA segment 25588 to 20162): Exon 1 24430 23986 ( 445 n); cDNA 31 477 ( 447 n); score: 0.916 MATCH C04HBa0077O05.1- SGN-E379112- 0.916 445 0.593 C PGS_C04HBa0077O05.1-_SGN-E379112- (24430 23986) Alignment (genomic DNA sequence = upper lines): TGTATAGCAA GAAGATATAT GTTTTTCTCT CGCTTTATAC AAAAACAGAA A-CACAATAT 24372 ||||| |||| ||| |||||| |||||| ||| |||||||||| ||||||| || | |||||||| TGTATGGCAA GAATATATAT GTTTTTGTCT CGCTTTATAC AAAAACAAAA ANCACAATAT 90 ACACACTTCT GTTGTATAAA GCTAGAGAAA ATTGTATTTT ACTGCAATTG TATAATTCAC 24312 | |||||||| |||||||||| | |||||||| ||||||||| ||||||||| |||||||||| ATACACTTCT GTTGTATAAA GTTAGAGAAA ATTGTATTTC ACTGCAATTA TATAATTCAC 150 AATTGTATAA TTCTTTGACC TTTTTCTCTG CAATATTTGA AGTAAAATGT TTGTAAATTG 24252 |||||||||| ||| ||| || |||||||||| |||||||||| |||||||||| |||||| ||| AATTGTATAA TTCGTTGGCC TTTTTCTCTG CAATATTTGA AGTAAAATGT TTGTAATTTG 210 TATAATTAAG TGTATAACAC GAAGATATAG ATTTTTGCAT GTGTATATAC AATTTTCTCT 24192 |||||||||| |||||||||| ||||||||| |||||| ||| |||||||||| |||||||||| TATAATTAAG TGTATAACAC GAAGATATAT ATTTTTACAT GTGTATATAC AATTTTCTCT 270 CGCTTTATAC AAAACAGAAA CATAA-TTAT ACACTTCTGT GTATAAAGCG AGAGAGGCGA 24133 |||||||||| |||| ||||| || || |||| |||||||||| ||||| |||| ||| |||||| CGCTTTATAC AAAATAGAAA CAGAATTTAT ACACTTCTGT GTATATAGCG AGATAGGCGA 330 GCGAGAATGG AGAGTGGCGA GCGAGATTTC TGGGAGAGAG GCG-CTGGCA AATTTTAGCT 24074 |||||||||| |||||||||| ||||||||| |||||| ||| || ||| || || ||||||| GCGAGAATGG AGAGTGGCGA GCGAGATTTT TGGGAGGGAG ACGCCTGACA AACTTTAGCT 390 AACGTTTGCT ATGGAGCACA ATTAAATCAA ACCCTAACTA TTCCATTTAT TTTAGGTTGT 24014 |||||||||| |||||||||| |||||||||| || ||| ||| |||||||| |||| || AACGTTTGCT ATGGAGCACA ATTAAATCAA ACTCTAGCTA CTCCATTTA- GTTAGATTAC 449 TAGTTTGCTA TTATATACAA TTTTCCCA 23986 |||||||||| |||||||||| |||||||| TAGTTTGCTA TTATATACAA TTTTCCCA 477 hqPGS_C04HBa0077O05.1-_SGN-E379112- (24430 23986) ******************************************************************************** EST sequence 185 +strand 570 n (File: SGN-E379618+) 1 AAAATGTATG TATATTGCAT AATTATAAGT GTATGGCAAG AATATATATG TTTTTGTCTC 61 GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 121 TGTATTTCAC TGCAATTATA TAATTCACAA TTGTATAATT CGTTGGCCTT TTTCTCTGCA 181 ATATTTGAAG TAAAATGTTT GTAATTTGTA TAATTAAGTG TATAACACGA AGATATATAT 241 TTTTACATGT GTATATACAA TTTTCTCTCG CTTTATACAA AATAGAAACA GAATTTATAC 301 ACTTCTGTGT ATATAGCGAG ATAGGCGAGC GAGAATGGAG AGTGGCGAGC GAGATTTTTG 361 GGAGGGAGAC GCCTGACAAA CTTTAGCTAA CGTTTGCTAT GGAGCACAAT TAAATCAAAC 421 TCTAGCTACT CCATTTAGTT AGATTACTAG TTTGCTATTA TATACAATTT TCCCAAGAGC 481 TTGTATAANA TGGAGAGAAG GAAAAAGATT TAGAATTATC GCTTGTGAAT GACAAGAAAA 541 GATTGCAAAA TAAGAATTTA GTTGTTTTGC Predicted gene structure (within gDNA segment 25581 to 21932): Exon 1 24430 23986 ( 445 n); cDNA 30 475 ( 446 n); score: 0.921 MATCH C04HBa0077O05.1- SGN-E379618+ 0.921 445 0.781 C PGS_C04HBa0077O05.1-_SGN-E379618+ (24430 23986) Alignment (genomic DNA sequence = upper lines): TGTATAGCAA GAAGATATAT GTTTTTCTCT CGCTTTATAC AAAAACAGAA ACACAATATA 24371 ||||| |||| ||| |||||| |||||| ||| |||||||||| ||||||| || |||||||||| TGTATGGCAA GAATATATAT GTTTTTGTCT CGCTTTATAC AAAAACAAAA ACACAATATA 89 CACACTTCTG TTGTATAAAG CTAGAGAAAA TTGTATTTTA CTGCAATTGT ATAATTCACA 24311 ||||||||| |||||||||| ||||||||| |||||||| | |||||||| | |||||||||| TACACTTCTG TTGTATAAAG TTAGAGAAAA TTGTATTTCA CTGCAATTAT ATAATTCACA 149 ATTGTATAAT TCTTTGACCT TTTTCTCTGC AATATTTGAA GTAAAATGTT TGTAAATTGT 24251 |||||||||| || ||| ||| |||||||||| |||||||||| |||||||||| ||||| |||| ATTGTATAAT TCGTTGGCCT TTTTCTCTGC AATATTTGAA GTAAAATGTT TGTAATTTGT 209 ATAATTAAGT GTATAACACG AAGATATAGA TTTTTGCATG TGTATATACA ATTTTCTCTC 24191 |||||||||| |||||||||| |||||||| | ||||| |||| |||||||||| |||||||||| ATAATTAAGT GTATAACACG AAGATATATA TTTTTACATG TGTATATACA ATTTTCTCTC 269 GCTTTATACA AAACAGAAAC ATAA-TTATA CACTTCTGTG TATAAAGCGA GAGAGGCGAG 24132 |||||||||| ||| |||||| | || ||||| |||||||||| |||| ||||| || ||||||| GCTTTATACA AAATAGAAAC AGAATTTATA CACTTCTGTG TATATAGCGA GATAGGCGAG 329 CGAGAATGGA GAGTGGCGAG CGAGATTTCT GGGAGAGAGG CG-CTGGCAA ATTTTAGCTA 24073 |||||||||| |||||||||| |||||||| | ||||| ||| || ||| ||| | |||||||| CGAGAATGGA GAGTGGCGAG CGAGATTTTT GGGAGGGAGA CGCCTGACAA ACTTTAGCTA 389 ACGTTTGCTA TGGAGCACAA TTAAATCAAA CCCTAACTAT TCCATTTATT TTAGGTTGTT 24013 |||||||||| |||||||||| |||||||||| | ||| ||| |||||||| |||| || | ACGTTTGCTA TGGAGCACAA TTAAATCAAA CTCTAGCTAC TCCATTTA-G TTAGATTACT 448 AGTTTGCTAT TATATACAAT TTTCCCA 23986 |||||||||| |||||||||| ||||||| AGTTTGCTAT TATATACAAT TTTCCCA 475 hqPGS_C04HBa0077O05.1-_SGN-E379618+ (24430 23986) ******************************************************************************** EST sequence 273 +strand 612 n (File: SGN-E394609+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 181 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAATTTATA 301 CACTTCTGTG TATATAGCGA GATAGGCGAG CGAGAATGGA GAGTGGCGAG CGAGATTTTT 361 GGGAGGGAGA CGCCTGACAA ACTTTAGCTA ACGTTTGCTA TGGAGCACAA TTAAATCAAA 421 CTCTAGCTAC TCCATTTAGT TAGATTACTA GTTTGCTATT ATATACAATT TTCCCAAGAG 481 CTTGTATAAA ATGGAGAGAA GGAAAAAGAT TTAGAATTAT CGCTTGTGAA TGACAAGAAA 541 AGATTGCAAA ATAAGAATTT AGTTGTTTTG CTTTAATAAG TTCCTTAATC ATTTCATTAG 601 GGGTGTAATA AT Predicted gene structure (within gDNA segment 25591 to 21522): Exon 1 24430 23986 ( 445 n); cDNA 31 476 ( 446 n); score: 0.921 MATCH C04HBa0077O05.1- SGN-E394609+ 0.921 445 0.727 C PGS_C04HBa0077O05.1-_SGN-E394609+ (24430 23986) Alignment (genomic DNA sequence = upper lines): TGTATAGCAA GAAGATATAT GTTTTTCTCT CGCTTTATAC AAAAACAGAA ACACAATATA 24371 ||||| |||| ||| |||||| |||||| ||| |||||||||| ||||||| || |||||||||| TGTATGGCAA GAATATATAT GTTTTTGTCT CGCTTTATAC AAAAACAAAA ACACAATATA 90 CACACTTCTG TTGTATAAAG CTAGAGAAAA TTGTATTTTA CTGCAATTGT ATAATTCACA 24311 ||||||||| |||||||||| ||||||||| |||||||| | |||||||| | |||||||||| TACACTTCTG TTGTATAAAG TTAGAGAAAA TTGTATTTCA CTGCAATTAT ATAATTCACA 150 ATTGTATAAT TCTTTGACCT TTTTCTCTGC AATATTTGAA GTAAAATGTT TGTAAATTGT 24251 |||||||||| || ||| ||| |||||||||| |||||||||| |||||||||| ||||| |||| ATTGTATAAT TCGTTGGCCT TTTTCTCTGC AATATTTGAA GTAAAATGTT TGTAATTTGT 210 ATAATTAAGT GTATAACACG AAGATATAGA TTTTTGCATG TGTATATACA ATTTTCTCTC 24191 |||||||||| |||||||||| |||||||| | ||||| |||| |||||||||| |||||||||| ATAATTAAGT GTATAACACG AAGATATATA TTTTTACATG TGTATATACA ATTTTCTCTC 270 GCTTTATACA AAACAGAAAC ATAA-TTATA CACTTCTGTG TATAAAGCGA GAGAGGCGAG 24132 |||||||||| ||| |||||| | || ||||| |||||||||| |||| ||||| || ||||||| GCTTTATACA AAATAGAAAC AGAATTTATA CACTTCTGTG TATATAGCGA GATAGGCGAG 330 CGAGAATGGA GAGTGGCGAG CGAGATTTCT GGGAGAGAGG CG-CTGGCAA ATTTTAGCTA 24073 |||||||||| |||||||||| |||||||| | ||||| ||| || ||| ||| | |||||||| CGAGAATGGA GAGTGGCGAG CGAGATTTTT GGGAGGGAGA CGCCTGACAA ACTTTAGCTA 390 ACGTTTGCTA TGGAGCACAA TTAAATCAAA CCCTAACTAT TCCATTTATT TTAGGTTGTT 24013 |||||||||| |||||||||| |||||||||| | ||| ||| |||||||| |||| || | ACGTTTGCTA TGGAGCACAA TTAAATCAAA CTCTAGCTAC TCCATTTA-G TTAGATTACT 449 AGTTTGCTAT TATATACAAT TTTCCCA 23986 |||||||||| |||||||||| ||||||| AGTTTGCTAT TATATACAAT TTTCCCA 476 hqPGS_C04HBa0077O05.1-_SGN-E394609+ (24430 23986) ******************************************************************************** EST sequence 117 -strand 651 n (File: SGN-E394141-) 1 CAATTATATA ATTCACAATT GTATAATTCG TTGGCCTTTT TCTTTGCAAT ATTTGAAGTA 61 AAATGTTTGT AATTTGTATA ATTAAGTGTA TAACACGAAG ATATATATTT TTACATGTGT 121 ATATACAATT TTCTCTCGCT TTATACAAAA TAGAAACAGA ATTTATACAC TTCTGTGTAT 181 ATAGCGAGAT AGGCGAGCGA GAATGGAGAG TGGCGAGCGA GATTTTTGGG AGGGAGACGC 241 CTGACAAACT TTAGCTAACG TTTGCTATGG AGCACAATTA AATCAAACTC TAGCTACTCC 301 ATTTAGTTAG ATTACTAGTT TGCTATTATA TACAATTTTC CCAAGAGCTT GTATAAAATG 361 GAGAGAAGGA AAAAGATTTA GAATTATCGC TTGTGAATGA CAAGAAAAGA TTGCAAAATA 421 AGAATTTAGT TGTTTTGCTT TAATAAGTTC CTTAATCATT TCATTAGGGG TGTAATAATA 481 GAATAAGAAA AGGGGCTTGA AATTCAGCTA TAAACAACCA GGGCATAGGT AACGTGTATA 541 CTTGATGTTA TAGGTGAAAT TTCAGCTTCT CAATTTCGAT TAATTAACAT TAAAAAGATA 601 TATATATATT CCCCCAGTAT CACATTGATA GAAAAAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 24991 to 19812): Exon 1 24327 23986 ( 342 n); cDNA 1 343 ( 343 n); score: 0.915 PPA cDNA 632 651 MATCH C04HBa0077O05.1- SGN-E394141- 0.915 342 0.525 C PGS_C04HBa0077O05.1-_SGN-E394141- (24327 23986) Alignment (genomic DNA sequence = upper lines): CAATTGTATA ATTCACAATT GTATAATTCT TTGACCTTTT TCTCTGCAAT ATTTGAAGTA 24268 ||||| |||| |||||||||| ||||||||| ||| |||||| ||| |||||| |||||||||| CAATTATATA ATTCACAATT GTATAATTCG TTGGCCTTTT TCTTTGCAAT ATTTGAAGTA 60 AAATGTTTGT AAATTGTATA ATTAAGTGTA TAACACGAAG ATATAGATTT TTGCATGTGT 24208 |||||||||| || ||||||| |||||||||| |||||||||| ||||| |||| || ||||||| AAATGTTTGT AATTTGTATA ATTAAGTGTA TAACACGAAG ATATATATTT TTACATGTGT 120 ATATACAATT TTCTCTCGCT TTATACAAAA CAGAAACATA A-TTATACAC TTCTGTGTAT 24149 |||||||||| |||||||||| |||||||||| ||||||| | | |||||||| |||||||||| ATATACAATT TTCTCTCGCT TTATACAAAA TAGAAACAGA ATTTATACAC TTCTGTGTAT 180 AAAGCGAGAG AGGCGAGCGA GAATGGAGAG TGGCGAGCGA GATTTCTGGG AGAGAGGCG- 24090 | ||||||| |||||||||| |||||||||| |||||||||| ||||| |||| || ||| || ATAGCGAGAT AGGCGAGCGA GAATGGAGAG TGGCGAGCGA GATTTTTGGG AGGGAGACGC 240 CTGGCAAATT TTAGCTAACG TTTGCTATGG AGCACAATTA AATCAAACCC TAACTATTCC 24030 ||| |||| | |||||||||| |||||||||| |||||||||| |||||||| | || ||| ||| CTGACAAACT TTAGCTAACG TTTGCTATGG AGCACAATTA AATCAAACTC TAGCTACTCC 300 ATTTATTTTA GGTTGTTAGT TTGCTATTAT ATACAATTTT CCCA 23986 ||||| ||| | || |||| |||||||||| |||||||||| |||| ATTTA-GTTA GATTACTAGT TTGCTATTAT ATACAATTTT CCCA 343 hqPGS_C04HBa0077O05.1-_SGN-E394141- (24327 23986) ******************************************************************************** EST sequence 61 -strand 605 n (File: SGN-E392605-) 1 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 61 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAATTTATA 121 CACTTCTGTG TATATAGCGA GATAGGCGAG CGAGAATGGA GAGTGGCGAG CGAGATTTTT 181 GGGAGGGAGA CGCCTGACAA ACTTTAGCTA ACGTTTGCTA TGGAGCACAA TTAAATCAAA 241 CTCTAGCTAC TCCATTTAGT TAGATTACTA GTTTGCTATT ATATACAATT TTCCCAAGAG 301 CTTGTATAAA ATGGAGAGAA GGAAAAAGAT TTAGAATTAT CGCTTGTGAA TGACAAGAAA 361 AGATTGCAAA ATAAGAATTT AGTTGTTTTG CTTTAATAAG TTCCTTAATC ATTTCATTAG 421 GGGTGTAATA ATAGAATAAG AAAAGGGGCT TGAAATTCAG CTATAAACAA CCAGGGCATA 481 GGTAACGTGT ATACTTGATG TTATAGGTGA AATTTCAGCT TCTCAATTTC GATTAATTAA 541 CATTATAGAT ATATATATAT ATTCCCACAG TATCACATTT GATAGGAAAA AAAAAAAAAA 601 AAAAA Predicted gene structure (within gDNA segment 24890 to 19802): Exon 1 24280 23986 ( 295 n); cDNA 1 296 ( 296 n); score: 0.915 PPA cDNA 587 605 MATCH C04HBa0077O05.1- SGN-E392605- 0.915 295 0.488 C PGS_C04HBa0077O05.1-_SGN-E392605- (24280 23986) Alignment (genomic DNA sequence = upper lines): AATATTTGAA GTAAAATGTT TGTAAATTGT ATAATTAAGT GTATAACACG AAGATATAGA 24221 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||| | AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 60 TTTTTGCATG TGTATATACA ATTTTCTCTC GCTTTATACA AAACAGAAAC ATAA-TTATA 24162 ||||| |||| |||||||||| |||||||||| |||||||||| ||| |||||| | || ||||| TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAATTTATA 120 CACTTCTGTG TATAAAGCGA GAGAGGCGAG CGAGAATGGA GAGTGGCGAG CGAGATTTCT 24102 |||||||||| |||| ||||| || ||||||| |||||||||| |||||||||| |||||||| | CACTTCTGTG TATATAGCGA GATAGGCGAG CGAGAATGGA GAGTGGCGAG CGAGATTTTT 180 GGGAGAGAGG CG-CTGGCAA ATTTTAGCTA ACGTTTGCTA TGGAGCACAA TTAAATCAAA 24043 ||||| ||| || ||| ||| | |||||||| |||||||||| |||||||||| |||||||||| GGGAGGGAGA CGCCTGACAA ACTTTAGCTA ACGTTTGCTA TGGAGCACAA TTAAATCAAA 240 CCCTAACTAT TCCATTTATT TTAGGTTGTT AGTTTGCTAT TATATACAAT TTTCCCA 23986 | ||| ||| |||||||| |||| || | |||||||||| |||||||||| ||||||| CTCTAGCTAC TCCATTTA-G TTAGATTACT AGTTTGCTAT TATATACAAT TTTCCCA 296 hqPGS_C04HBa0077O05.1-_SGN-E392605- (24280 23986) ******************************************************************************** EST sequence 253 +strand 530 n (File: SGN-E393065+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG CGCATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC TAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGACAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGCATAAT TCCTTGGCCT TTTTCACTGC 181 CATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTCACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATATAAAC ATAATCTATA 301 CACTTCTGTG TATATAACGA GATATGCCAG CGATAATGGA AAATGGCCAG CGAGATTTTT 361 GGGAGGCAGA CGCCTGACCA ACTTTAGCTA ACGTTTGCCA TGAAGCACAA TAAGATCTAA 421 CTCTATCTAC TCCATTTAGT TAGATTACTA GTTTGCTATT ATATACAATT TGTCCCATAG 481 CTTGTATAAA ATGGAGAGAA GGAAAAAGAT TTAGAATTAT CGCTTGTGAA Predicted gene structure (within gDNA segment 26689 to 21378): Exon 1 24423 23991 ( 433 n); cDNA 38 471 ( 434 n); score: 0.875 MATCH C04HBa0077O05.1- SGN-E393065+ 0.875 433 0.817 C PGS_C04HBa0077O05.1-_SGN-E393065+ (24423 23991) Alignment (genomic DNA sequence = upper lines): CAAGAAGATA TATGTTTTTC TCTCGCTTTA TACAAAAACA GAAACACAAT ATACACACTT 24364 |||||| ||| ||||||||| |||||||||| ||| |||||| ||||||||| ||| |||||| CAAGAATATA TATGTTTTTG TCTCGCTTTA TACTAAAACA AAAACACAAT ATATACACTT 97 CTGTTGTATA AAGCTAGAGA AAATTGTATT TTACTGCAAT TGTATAATTC ACAATTGTAT 24304 |||||||||| ||| |||| | |||||||||| | |||||||| | |||||||| ||||||| || CTGTTGTATA AAGTTAGACA AAATTGTATT TCACTGCAAT TATATAATTC ACAATTGCAT 157 AATTCTTTGA CCTTTTTCTC TGCAATATTT GAAGTAAAAT GTTTGTAAAT TGTATAATTA 24244 ||||| ||| |||||||| | ||| |||||| |||||||||| |||||||| | |||||||||| AATTCCTTGG CCTTTTTCAC TGCCATATTT GAAGTAAAAT GTTTGTAATT TGTATAATTA 217 AGTGTATAAC ACGAAGATAT AGATTTTTGC ATGTGTATAT ACAATTTTCT CTCGCTTTAT 24184 |||||||||| |||||||||| | ||||| | |||||||||| |||||||||| |||||||||| AGTGTATAAC ACGAAGATAT ATATTTTCAC ATGTGTATAT ACAATTTTCT CTCGCTTTAT 277 ACAAAACAGA AACATAAT-T ATACACTTCT GTGTATAAAG CGAGAGAGGC GAGCGAGAAT 24125 |||||| | | |||||||| | |||||||||| ||||||| | ||||| | || ||||| ||| ACAAAATATA AACATAATCT ATACACTTCT GTGTATATAA CGAGATATGC CAGCGATAAT 337 GGAGAGTGGC GAGCGAGATT TCTGGGAGAG AGGCG-CTGG CAAATTTTAG CTAACGTTTG 24066 ||| | |||| ||||||||| | |||||| || || ||| | || ||||| |||||||||| GGAAAATGGC CAGCGAGATT TTTGGGAGGC AGACGCCTGA CCAACTTTAG CTAACGTTTG 397 CTATGGAGCA CAATTAAATC AAACCCTAAC TATTCCATTT ATTTTAGGTT GTTAGTTTGC 24006 | ||| |||| |||| | ||| ||| ||| | || ||||||| | |||| || |||||||| CCATGAAGCA CAATAAGATC TAACTCTATC TACTCCATTT A-GTTAGATT ACTAGTTTGC 456 TATTATATAC AATTT 23991 |||||||||| ||||| TATTATATAC AATTT 471 hqPGS_C04HBa0077O05.1-_SGN-E393065+ (24423 23991) ******************************************************************************** EST sequence 301 +strand 450 n (File: SGN-E200845+) 1 AAAATGTATG TATATTGCAT AATTATAAGT GTATGGCAAG AATATATATG TTTTTGTCTC 61 GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 121 TGTATTTCAC TGCAATTATA TAATTCACAA TTGTATAATT CGTTGGCCTT TTTCTCTGCA 181 ATATTTGAAG TAAAATGTTT GTAATTTGTA TAATTAAGTG TATAACACGA AGATATATAT 241 TTTTACATGT GTATATACAA TTTTCTCTCG CTTTATACAA AATAGAAACA GAATTTATAC 301 ACTTCTGTGT ATATAGCGAG ATAGGCGAGC GAGAATGGAG AGTGGCGAGC GAGATTTTTG 361 GGAGGGAGAC GCCTGACAAA CTTTAGCTAA CGTTTGCTAT GGAGCACAAT TAAATCAAAC 421 TCTAGCTACT CCATTTAGTT AGATTACTAG Predicted gene structure (within gDNA segment 25581 to 23132): Exon 1 24430 24011 ( 420 n); cDNA 30 450 ( 421 n); score: 0.917 MATCH C04HBa0077O05.1- SGN-E200845+ 0.917 420 0.933 C PGS_C04HBa0077O05.1-_SGN-E200845+ (24430 24011) Alignment (genomic DNA sequence = upper lines): TGTATAGCAA GAAGATATAT GTTTTTCTCT CGCTTTATAC AAAAACAGAA ACACAATATA 24371 ||||| |||| ||| |||||| |||||| ||| |||||||||| ||||||| || |||||||||| TGTATGGCAA GAATATATAT GTTTTTGTCT CGCTTTATAC AAAAACAAAA ACACAATATA 89 CACACTTCTG TTGTATAAAG CTAGAGAAAA TTGTATTTTA CTGCAATTGT ATAATTCACA 24311 ||||||||| |||||||||| ||||||||| |||||||| | |||||||| | |||||||||| TACACTTCTG TTGTATAAAG TTAGAGAAAA TTGTATTTCA CTGCAATTAT ATAATTCACA 149 ATTGTATAAT TCTTTGACCT TTTTCTCTGC AATATTTGAA GTAAAATGTT TGTAAATTGT 24251 |||||||||| || ||| ||| |||||||||| |||||||||| |||||||||| ||||| |||| ATTGTATAAT TCGTTGGCCT TTTTCTCTGC AATATTTGAA GTAAAATGTT TGTAATTTGT 209 ATAATTAAGT GTATAACACG AAGATATAGA TTTTTGCATG TGTATATACA ATTTTCTCTC 24191 |||||||||| |||||||||| |||||||| | ||||| |||| |||||||||| |||||||||| ATAATTAAGT GTATAACACG AAGATATATA TTTTTACATG TGTATATACA ATTTTCTCTC 269 GCTTTATACA AAACAGAAAC ATAA-TTATA CACTTCTGTG TATAAAGCGA GAGAGGCGAG 24132 |||||||||| ||| |||||| | || ||||| |||||||||| |||| ||||| || ||||||| GCTTTATACA AAATAGAAAC AGAATTTATA CACTTCTGTG TATATAGCGA GATAGGCGAG 329 CGAGAATGGA GAGTGGCGAG CGAGATTTCT GGGAGAGAGG CGC-TGGCAA ATTTTAGCTA 24073 |||||||||| |||||||||| |||||||| | ||||| ||| ||| || ||| | |||||||| CGAGAATGGA GAGTGGCGAG CGAGATTTTT GGGAGGGAGA CGCCTGACAA ACTTTAGCTA 389 ACGTTTGCTA TGGAGCACAA TTAAATCAAA CCCTAACTAT TCCATTTATT TTAGGTTGTT 24013 |||||||||| |||||||||| |||||||||| | ||| ||| |||||||| |||| || | ACGTTTGCTA TGGAGCACAA TTAAATCAAA CTCTAGCTAC TCCATTTA-G TTAGATTACT 448 AG 24011 || AG 450 hqPGS_C04HBa0077O05.1-_SGN-E200845+ (24430 24011) ******************************************************************************** EST sequence 258 +strand 325 n (File: SGN-E393076+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 181 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAAAAAC AGAATTTATT 301 TTTTTTTGTG TATATAGCGA GATAG Predicted gene structure (within gDNA segment 25591 to 23148): Exon 1 24430 24137 ( 294 n); cDNA 31 325 ( 295 n); score: 0.913 MATCH C04HBa0077O05.1- SGN-E393076+ 0.913 294 0.905 C PGS_C04HBa0077O05.1-_SGN-E393076+ (24430 24137) Alignment (genomic DNA sequence = upper lines): TGTATAGCAA GAAGATATAT GTTTTTCTCT CGCTTTATAC AAAAACAGAA ACACAATATA 24371 ||||| |||| ||| |||||| |||||| ||| |||||||||| ||||||| || |||||||||| TGTATGGCAA GAATATATAT GTTTTTGTCT CGCTTTATAC AAAAACAAAA ACACAATATA 90 CACACTTCTG TTGTATAAAG CTAGAGAAAA TTGTATTTTA CTGCAATTGT ATAATTCACA 24311 ||||||||| |||||||||| ||||||||| |||||||| | |||||||| | |||||||||| TACACTTCTG TTGTATAAAG TTAGAGAAAA TTGTATTTCA CTGCAATTAT ATAATTCACA 150 ATTGTATAAT TCTTTGACCT TTTTCTCTGC AATATTTGAA GTAAAATGTT TGTAAATTGT 24251 |||||||||| || ||| ||| |||||||||| |||||||||| |||||||||| ||||| |||| ATTGTATAAT TCGTTGGCCT TTTTCTCTGC AATATTTGAA GTAAAATGTT TGTAATTTGT 210 ATAATTAAGT GTATAACACG AAGATATAGA TTTTTGCATG TGTATATACA ATTTTCTCTC 24191 |||||||||| |||||||||| |||||||| | ||||| |||| |||||||||| |||||||||| ATAATTAAGT GTATAACACG AAGATATATA TTTTTACATG TGTATATACA ATTTTCTCTC 270 GCTTTATACA AAACAGAAAC ATAA-TTATA CACTTCTGTG TATAAAGCGA GAGAG 24137 |||||||||| ||| | |||| | || |||| || |||| |||| ||||| || || GCTTTATACA AAATAAAAAC AGAATTTATT TTTTTTTGTG TATATAGCGA GATAG 325 hqPGS_C04HBa0077O05.1-_SGN-E393076+ (24430 24137) ******************************************************************************** EST sequence 255 +strand 308 n (File: SGN-E393075+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 181 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAGGTTTTT 301 TTTTTTTT Predicted gene structure (within gDNA segment 25591 to 23318): Exon 1 24430 24157 ( 274 n); cDNA 31 304 ( 274 n); score: 0.920 MATCH C04HBa0077O05.1- SGN-E393075+ 0.920 274 0.890 C PGS_C04HBa0077O05.1-_SGN-E393075+ (24430 24157) Alignment (genomic DNA sequence = upper lines): TGTATAGCAA GAAGATATAT GTTTTTCTCT CGCTTTATAC AAAAACAGAA ACACAATATA 24371 ||||| |||| ||| |||||| |||||| ||| |||||||||| ||||||| || |||||||||| TGTATGGCAA GAATATATAT GTTTTTGTCT CGCTTTATAC AAAAACAAAA ACACAATATA 90 CACACTTCTG TTGTATAAAG CTAGAGAAAA TTGTATTTTA CTGCAATTGT ATAATTCACA 24311 ||||||||| |||||||||| ||||||||| |||||||| | |||||||| | |||||||||| TACACTTCTG TTGTATAAAG TTAGAGAAAA TTGTATTTCA CTGCAATTAT ATAATTCACA 150 ATTGTATAAT TCTTTGACCT TTTTCTCTGC AATATTTGAA GTAAAATGTT TGTAAATTGT 24251 |||||||||| || ||| ||| |||||||||| |||||||||| |||||||||| ||||| |||| ATTGTATAAT TCGTTGGCCT TTTTCTCTGC AATATTTGAA GTAAAATGTT TGTAATTTGT 210 ATAATTAAGT GTATAACACG AAGATATAGA TTTTTGCATG TGTATATACA ATTTTCTCTC 24191 |||||||||| |||||||||| |||||||| | ||||| |||| |||||||||| |||||||||| ATAATTAAGT GTATAACACG AAGATATATA TTTTTACATG TGTATATACA ATTTTCTCTC 270 GCTTTATACA AAACAGAAAC ATAATTATAC ACTT 24157 |||||||||| ||| |||||| | | | | || GCTTTATACA AAATAGAAAC AGAGGTTTTT TTTT 304 hqPGS_C04HBa0077O05.1-_SGN-E393075+ (24430 24157) ******************************************************************************** EST sequence 27 -strand 680 n (File: SGN-E379427-) 1 AAAACTTGCA AAACGGAATG GGCCTATTCA CATCAGATCA AGTTTTGTTC ACAGACCAAA 61 GGTCTAAAGG TACTGTTAAT TTGTGGGCCA GTAATTCTAA AGTTTTTGAA ACCGCATTTG 121 TTAATGCGAT GACTAAATTG GGCCGAGTTG GTGTGAAGAC GGGTAAGAAT GGAAATATTC 181 GTATAGACTG TGGAGCATTT AATTAAGGGC AACTTTCACG TATAGCAAAT AAAAAATTCA 241 TATTTGTATG TTATAACAAA GTTTGCATAA TTGCGCTCCA TAGCAAACAT AAAACTGTAT 301 AATTCGCTAT ACATATACAA TTGTATAATT CGCTGGCCTA AATTGTATAA TTTGATGGCC 361 TATTTCGCTG CAATTGTATA ATTCGCTATC TTCATTCACT GCGATTGTGT AATGCACAAT 421 CGTATAAATC GCTGCTTATT TCGCTGCAAT ATTTTTATAA ATTTGCTTTG CATACCGTTG 481 AATCGAATTA AAATGTATGT ATATTGCATA ATTATAAGTG TATGGCAAGA ATATATATGT 541 TTTTGTCTCG CTTTATACAA AAACAAAAAC ACAATATATA CACTTCTGTT GTATAAAGTT 601 AGAGAAAATT GTATTTCACT GCAATTATAT AATTCACAAT TGTATAATTC GTTGCCCTTT 661 TTCTGAACAA TATTTGAAGT Predicted gene structure (within gDNA segment 28490 to 23399): Exon 1 27496 27485 ( 12 n); cDNA 196 207 ( 12 n); score: 0.917 Intron 1 27484 24680 (2805 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.88) Exon 2 24679 24434 ( 246 n); cDNA 208 453 ( 246 n); score: 0.894 Intron 2 24433 24375 ( 59 n); Pd: 0.000 (s: 0.84), Pa: 0.000 (s: 0) Exon 3 24374 24339 ( 36 n); cDNA 454 489 ( 36 n); score: 0.556 Intron 3 24338 24251 ( 88 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.58) Exon 4 24250 24138 ( 113 n); cDNA 490 605 ( 116 n); score: 0.690 MATCH C04HBa0077O05.1- SGN-E379427- 0.830 407 0.599 C PGS_C04HBa0077O05.1-_SGN-E379427- (27496 27485,24679 24434,24374 24339,24250 24138) Alignment (genomic DNA sequence = upper lines): CATATAATTA AGAATAAAAG ATGGCAATAA TAACCCACTA ATTTACTCAA GGTTACCTCT 27437 ||| |||||| || CATTTAATTA AG........ .......... .......... .......... .......... 207 TTTAACCCCC AAGTAATTAG ACTTATTAAC ATTAACCCAC TAACTTTATA ATTAAAACAG 27377 .......... .......... .......... .......... .......... .......... 207 GAATAGTCAA AAACTTCCTT TAAAACATTA AAGAAATCCG ACTCAGCCTG GGATTACGCA 27317 .......... .......... .......... .......... .......... .......... 207 GCCTGTGACG GCCTGTCATG CCTGCGACGG TCCGTCCTGC TGCTCCGTCA CAGAGTTCAG 27257 .......... .......... .......... .......... .......... .......... 207 AGACTCAATT CCCTTAAAGA GTCTGTGACG GTCCGTCACG CCTGTGACGG TCCGTCCTGC 27197 .......... .......... .......... .......... .......... .......... 207 CATTCCGTTA CGAAGTTTAG AGAGTCGATT TCAGTACCCA TTTTTCAGAA TTTCAAAGTG 27137 .......... .......... .......... .......... .......... .......... 207 TTTTGAAACG AGACCCCCTC GACGGTCCGT CGTGCCCATG ACGGTCCGTC GTGGAATCCG 27077 .......... .......... .......... .......... .......... .......... 207 TCGTCTCAGC CAGTTTTCCA GAAATAACAT CTCTTGCTCA AAACGACTAA ACAGGTCGTT 27017 .......... .......... .......... .......... .......... .......... 207 ACAATAAATA TTAGGTATAA TAGATAAATT TATCATTTTA CCTGATCTTA TTTCACATGT 26957 .......... .......... .......... .......... .......... .......... 207 ATGTCATCTA TTTTTAGGTG TGTATAAATA GATATTTAAA TTAAATTTGT ATAAAGTTGA 26897 .......... .......... .......... .......... .......... .......... 207 AGTAGACACT GAATTCTACG AGACATAATA CAAGTAAGAG ATCTAGGACG CAAATTGTCA 26837 .......... .......... .......... .......... .......... .......... 207 TGTAAGATGA CACGCAAAAA TGTGTGTATT TATTTATTCA ACGAATTTAT AGAAATATAA 26777 .......... .......... .......... .......... .......... .......... 207 GTATCTACTC GTGCACACTC AAAAATAAAG AATATAAATA TAAGTGATAA GAGCATATTT 26717 .......... .......... .......... .......... .......... .......... 207 ATATATTATG TCTAACTATT AATTTGATGT CCGTTGATCA CATAAAAATT GAACCAAATG 26657 .......... .......... .......... .......... .......... .......... 207 AATCATTTCC TACTTATTCT TAATATACTT AAATTAGTTA TCTTCCATTA TAACATATAC 26597 .......... .......... .......... .......... .......... .......... 207 AATTCATTCA TTATTCGTAA CTATCCTTTG TAAATATAGG TGCATCGTAT GTTTAATATA 26537 .......... .......... .......... .......... .......... .......... 207 TGGATGAAAT ATTAATGAAG ATGTATAAAT TTTATACGAG AGTTATACCA TTAAAATTAA 26477 .......... .......... .......... .......... .......... .......... 207 AATTTATAAT GCTTGGTATA AAATTATACC AAGAAAAATG TTTTGCATGA ATATCATCTT 26417 .......... .......... .......... .......... .......... .......... 207 AAACAAAACA ACACACAAAT ATGCAATTCG AATGTGCATA GAACCAAATA TCCCATAAAT 26357 .......... .......... .......... .......... .......... .......... 207 TTAAGGTCAA TGAGCTAGAG TTCACCCAGG CAAGCAGCCT TATTTCCCCC CCCAAATTTA 26297 .......... .......... .......... .......... .......... .......... 207 GGCCTTATTT TTTTTCTTTA AGATTAACAT GTCTGAATTT GAATAAACAT TTGAATAATT 26237 .......... .......... .......... .......... .......... .......... 207 TTGTGTCTAA GTTTAAACAT TAAATGATTA ATATTATTTA TTTTTTATCA TCTGAATATG 26177 .......... .......... .......... .......... .......... .......... 207 AGTAATTATT TATAATTAAA CATTATAAAT ATATAATTTA AAATAAGAAA GTAATTAACC 26117 .......... .......... .......... .......... .......... .......... 207 ATCGTTTTTT TTTTTCTCAA AGCATATTTA AAAAGAGGAG GTTGTTCGAT TTTGTAACTA 26057 .......... .......... .......... .......... .......... .......... 207 CACAATTAAG AATAAAACGG TACTTGCCGA TGATAAAATA TCTACTTTGA ATGCTCTTCT 25997 .......... .......... .......... .......... .......... .......... 207 TTCAAAAATT AGTGTGTATA ATGAATTTTT TTTAAAAAAA AGATATATTT ACATTAGATA 25937 .......... .......... .......... .......... .......... .......... 207 TGATGCAGTT AAACAGTTAT TGAAACATGA GGTTATTTTC TTAGAATGTG TAAGGTCCTA 25877 .......... .......... .......... .......... .......... .......... 207 AAAGTTATTT GTAATCTTTT AACTAAGGAA TTTGACTTGA AAATGAATAA ATGGTCTTTA 25817 .......... .......... .......... .......... .......... .......... 207 CCTCGAAGGA GATGAAACGG GATGGTGCTA AAGCCCATTG ATTGAGATAA TATGACACAA 25757 .......... .......... .......... .......... .......... .......... 207 GGCCATATTT TTTGATGCAG ATAGTAGGGG CGATTCAACT CTAAAGCCAC TAAAGTAATG 25697 .......... .......... .......... .......... .......... .......... 207 ACTTTAGGCT TCCAAAATAT AACGCCTCAA ATTTATTTAA TGTTACAGAT ATACAAATAT 25637 .......... .......... .......... .......... .......... .......... 207 AAATATACTT ATAATTATGT ATCTATAATT AGTATTAATT GAAATTTTCT TAATAGTTTC 25577 .......... .......... .......... .......... .......... .......... 207 TAATCATGGG CGAATCCACA TGTAAAGGTG GGGTGTACGT CCACTCGTTA ACTTCGAAAA 25517 .......... .......... .......... .......... .......... .......... 207 ATCATGTATA AATATATATA TATTGAGAAA CTGATAAGGA AAAAAAATAT AATAAAAAAT 25457 .......... .......... .......... .......... .......... .......... 207 GCAACCTTAA TGAACATTGA ACTGGTCTTG ATTTGCTGAT AGAAATAAGA AAATACCTCC 25397 .......... .......... .......... .......... .......... .......... 207 TTGCAGACCT AGATTTCAAT CCTGATCAAT AAGTCACTAT CCTATTCAAA TCTTGGCTTC 25337 .......... .......... .......... .......... .......... .......... 207 GCCTATATTT TGTGTTAAAT TTGAACACTA AGAGCCTGTT TGGCTCAGCT TAAAAGCTGG 25277 .......... .......... .......... .......... .......... .......... 207 TCAAACTGAC TTAAAAGCTG GTTTTTGACT TATTTAGTTG TTTGGCAATA CTCAAAATAA 25217 .......... .......... .......... .......... .......... .......... 207 CTTACTTTAA GTTAAAAAAA ACTTATTTTA AGCCAAAAGT TAAAAACTGG GGTAGGGGTG 25157 .......... .......... .......... .......... .......... .......... 207 TTTTTTTTTT TTAGCTTATA AGCTGTTTTA AGTTGACCAC ATTTTTATCT TTTTGCCATT 25097 .......... .......... .......... .......... .......... .......... 207 AATATTTTTA TGCAATCTCC AAATTACTCA TATAACTCTA ACATCTCTTT CTTCCATTTT 25037 .......... .......... .......... .......... .......... .......... 207 TCCCTTTTCA CGTTTGATAT AACAACTTCA GCACTTTTAT CCAAACGCAT AACTGCTTAT 24977 .......... .......... .......... .......... .......... .......... 207 TTTAAAAATA AATTTCAACA CTTCTAAAAG TAATTTTTTA AAGCTGCTTT TATTAAGCCC 24917 .......... .......... .......... .......... .......... .......... 207 ATCCAAACGG ATCCTAAGTC CGTATTGTTG ATTTAACCAA GATTGTGCCA CCCTCTTAAT 24857 .......... .......... .......... .......... .......... .......... 207 ACAACCAAAG AGAGAAAAAA GATAACCTGG TCGGCCCAAA AGTGACCAGA CCAGGTCAAT 24797 .......... .......... .......... .......... .......... .......... 207 CATTATACAT ATATTTTTGA AATTTACTAT TTTCTAAAAG TACAATATAA TTAAAAAACG 24737 .......... .......... .......... .......... .......... .......... 207 TATACAATTT ATCAGTTGTT ATTTTCTTAA TTTGTCTAAT TCTCTTTAAT TTGAAAGGGC 24677 ||| .......... .......... .......... .......... .......... .......GGC 210 AACTTTCACA TATAGGAAAT AAAATATTTA TATTTGTATG CTATAGCAAA TTTTGTATAA 24617 ||||||||| ||||| |||| |||| ||| | |||||||||| |||| |||| |||| |||| AACTTTCACG TATAGCAAAT AAAAAATTCA TATTTGTATG TTATAACAAA GTTTGCATAA 270 TTGCGCTCCA TAGCAAACAT AAAACTGTAT AATTCGCTAT ACATATACAA GTGTATAGTT 24557 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| || TTGCGCTCCA TAGCAAACAT AAAACTGTAT AATTCGCTAT ACATATACAA TTGTATAATT 330 CGCTGGCCTA AATTGTATAA TTCGCTGGCC TATTTCGCTG CAATAGTATA ATTCGTTATC 24497 |||||||||| |||||||||| || | ||||| |||||||||| |||| ||||| ||||| |||| CGCTGGCCTA AATTGTATAA TTTGATGGCC TATTTCGCTG CAATTGTATA ATTCGCTATC 390 CTATTTCACT GCAATTGTAT AATGCACGAT TATATAATTA ACTGCCTATT TCGCTGCAAT 24437 | |||||| || ||||| | ||||||| || ||||| | |||| |||| |||||||||| TTCATTCACT GCGATTGTGT AATGCACAAT CGTATAAATC GCTGCTTATT TCGCTGCAAT 450 ATTAAGTGTA TAGCAAGAAG ATATATGTTT TTCTCTCGCT TTATACAAAA ACAGAAACAC 24377 ||| ATT....... .......... .......... .......... .......... .......... 453 AATATACACA CTTCTGTTGT ATAAAGCTAG AGAAAATTGT ATTTTACTGC AATTGTATAA 24317 | || | | || ||| ||| | | | |||| ..TTTATAAA TTTGCTTTGC ATACCGTTGA ATCGAATT.. .......... .......... 489 TTCACAATTG TATAATTCTT TGACCTTTTT CTCTGCAATA TTTGAAGTAA AATGTTTGTA 24257 .......... .......... .......... .......... .......... .......... 489 AATTGTATAA T-TAAGTGTA TAACACGAAG ATATAGATTT TTGCATGTGT ATATACAATT 24198 | || | || || || | || | ||| || | | ||| | | ||||| || ......AAAA TGTATGTATA TTGCATAATT ATA-AGTGTA TGGCAAGAAT ATATATGTTT 542 TTCTCTCGCT TTATAC-AAA ACAGAAACAT AAT-TATACA CTTCTG-TGT ATAAAGCGAG 24141 || ||||||| |||||| ||| ||| ||||| ||| |||||| |||||| ||| |||||| || TTGTCTCGCT TTATACAAAA ACAAAAACAC AATATATACA CTTCTGTTGT ATAAAGTTAG 602 AGA 24138 ||| AGA 605 hqPGS_C04HBa0077O05.1-_SGN-E379427- (24679 24434) ******************************************************************************** EST sequence 12 -strand 506 n (File: SGN-E578392-) 1 TTTTTTTTTT AGCTTATAAG CTGTTTTAAG TTGATCACAT CTTTATCTTT TTGCCCTTAA 61 TATTTTTATA CAATTTCCAA GTTACACATA TAACCCTAAC ATCTCTTTCT TCCATTTTTC 121 GCTTTTCACG TTTGGCATAA CAACTTCAGC ACTTTTATCC AAATGCATAA CTGTTTATTT 181 TAGAAATAAG TTTCAGCACT TTCAAAAGTA CTTTTTTAAA GCTGTTTTTA TTAAGCCCAT 241 CCAAACGGGC CCTAAATAAG AAAATATTCT GACAAAAATT CTCATAAATT AATTTAGACT 301 ATATATTATT TTTAATTTCT TACCCAGTAA ACTAATAAAT GAGTAGGTCA ATAACTTTAA 361 TTTCCCAAAC TTAGGTGGAT TAGACATGTT AGGTTGATAA ACTAACTCTG TCACCTTTAT 421 CTATATTTAT GTCTTTAATA ATATATGAGA TTTGACTTCG TTATATATAT CGAACATCGA 481 ATCGAAAAAA ACTGGTTTAA GCTGAG Predicted gene structure (within gDNA segment 25764 to 18562): Exon 1 25154 24900 ( 255 n); cDNA 1 255 ( 255 n); score: 0.914 Intron 1 24899 23624 (1276 n); Pd: 0.030 (s: 0.92), Pa: 0.000 (s: 0.62) Exon 2 23623 23556 ( 68 n); cDNA 256 318 ( 63 n); score: 0.662 Intron 2 23555 23375 ( 181 n); Pd: 0.000 (s: 0.64), Pa: 0.000 (s: 0.61) Exon 3 23374 23334 ( 41 n); cDNA 319 358 ( 40 n); score: 0.610 Intron 3 23333 20237 (3097 n); Pd: 0.786 (s: 0.61), Pa: 0.963 (s: 0) Exon 4 20236 20221 ( 16 n); cDNA 359 374 ( 16 n); score: 0.625 Intron 4 20220 19755 ( 466 n); Pd: 0.000 (s: 0), Pa: 0.995 (s: 0) Exon 5 19754 19737 ( 18 n); cDNA 375 392 ( 18 n); score: 0.778 MATCH C04HBa0077O05.1- SGN-E578392- 0.861 398 0.787 C PGS_C04HBa0077O05.1-_SGN-E578392- (25154 24900,23623 23556,23374 23334,20236 20221,19754 19737) Alignment (genomic DNA sequence = upper lines): TTTTTTTTTT AGCTTATAAG CTGTTTTAAG TTGACCACAT TTTTATCTTT TTGCCATTAA 25095 |||||||||| |||||||||| |||||||||| |||| ||||| ||||||||| ||||| |||| TTTTTTTTTT AGCTTATAAG CTGTTTTAAG TTGATCACAT CTTTATCTTT TTGCCCTTAA 60 TATTTTTATG CAATCTCCAA ATTACTCATA TAACTCTAAC ATCTCTTTCT TCCATTTTTC 25035 ||||||||| |||| ||||| |||| |||| |||| ||||| |||||||||| |||||||||| TATTTTTATA CAATTTCCAA GTTACACATA TAACCCTAAC ATCTCTTTCT TCCATTTTTC 120 CCTTTTCACG TTTGATATAA CAACTTCAGC ACTTTTATCC AAACGCATAA CTGCTTATTT 24975 ||||||||| |||| |||| |||||||||| |||||||||| ||| |||||| ||| |||||| GCTTTTCACG TTTGGCATAA CAACTTCAGC ACTTTTATCC AAATGCATAA CTGTTTATTT 180 TAAAAATAAA TTTCAACACT TCTAAAAGTA ATTTTTTAAA GCTGCTTTTA TTAAGCCCAT 24915 || |||||| ||||| |||| | ||||||| ||||||||| |||| ||||| |||||||||| TAGAAATAAG TTTCAGCACT TTCAAAAGTA CTTTTTTAAA GCTGTTTTTA TTAAGCCCAT 240 CCAAACGGAT CCTAAGTCCG TATTGTTGAT TTAACCAAGA TTGTGCCACC CTCTTAATAC 24855 |||||||| ||||| CCAAACGGGC CCTAA..... .......... .......... .......... .......... 255 AACCAAAGAG AGAAAAAAGA TAACCTGGTC GGCCCAAAAG TGACCAGACC AGGTCAATCA 24795 .......... .......... .......... .......... .......... .......... 255 TTATACATAT ATTTTTGAAA TTTACTATTT TCTAAAAGTA CAATATAATT AAAAAACGTA 24735 .......... .......... .......... .......... .......... .......... 255 TACAATTTAT CAGTTGTTAT TTTCTTAATT TGTCTAATTC TCTTTAATTT GAAAGGGCAA 24675 .......... .......... .......... .......... .......... .......... 255 CTTTCACATA TAGGAAATAA AATATTTATA TTTGTATGCT ATAGCAAATT TTGTATAATT 24615 .......... .......... .......... .......... .......... .......... 255 GCGCTCCATA GCAAACATAA AACTGTATAA TTCGCTATAC ATATACAAGT GTATAGTTCG 24555 .......... .......... .......... .......... .......... .......... 255 CTGGCCTAAA TTGTATAATT CGCTGGCCTA TTTCGCTGCA ATAGTATAAT TCGTTATCCT 24495 .......... .......... .......... .......... .......... .......... 255 ATTTCACTGC AATTGTATAA TGCACGATTA TATAATTAAC TGCCTATTTC GCTGCAATAT 24435 .......... .......... .......... .......... .......... .......... 255 TAAGTGTATA GCAAGAAGAT ATATGTTTTT CTCTCGCTTT ATACAAAAAC AGAAACACAA 24375 .......... .......... .......... .......... .......... .......... 255 TATACACACT TCTGTTGTAT AAAGCTAGAG AAAATTGTAT TTTACTGCAA TTGTATAATT 24315 .......... .......... .......... .......... .......... .......... 255 CACAATTGTA TAATTCTTTG ACCTTTTTCT CTGCAATATT TGAAGTAAAA TGTTTGTAAA 24255 .......... .......... .......... .......... .......... .......... 255 TTGTATAATT AAGTGTATAA CACGAAGATA TAGATTTTTG CATGTGTATA TACAATTTTC 24195 .......... .......... .......... .......... .......... .......... 255 TCTCGCTTTA TACAAAACAG AAACATAATT ATACACTTCT GTGTATAAAG CGAGAGAGGC 24135 .......... .......... .......... .......... .......... .......... 255 GAGCGAGAAT GGAGAGTGGC GAGCGAGATT TCTGGGAGAG AGGCGCTGGC AAATTTTAGC 24075 .......... .......... .......... .......... .......... .......... 255 TAACGTTTGC TATGGAGCAC AATTAAATCA AACCCTAACT ATTCCATTTA TTTTAGGTTG 24015 .......... .......... .......... .......... .......... .......... 255 TTAGTTTGCT ATTATATACA ATTTTCCCAA TTTGAAATCA ATAATGTTTG AGTATTGATT 23955 .......... .......... .......... .......... .......... .......... 255 CTATAAGAAT ATCTTCAATT ATTTGGTATC TTCTTAGATA TTTCAAGCTT AAACTAATTA 23895 .......... .......... .......... .......... .......... .......... 255 AATTTATCGA ATAATTAAAT TTTAAAAGAC GTAATCTTAA CTTTAAATGT GATCTAAAGT 23835 .......... .......... .......... .......... .......... .......... 255 GTAACGATCA CTTCTTTCGA GTTTTTGGCC AAAATCATTT TTAAACTATA CCTCAGACTC 23775 .......... .......... .......... .......... .......... .......... 255 AAACTACATC CTTAAAGTAT CATTCTTACC ATGAAACATC CTTAAAGTAT TTTAAAGTTA 23715 .......... .......... .......... .......... .......... .......... 255 ATAATTTTCA TCCTTCTACT TGAATTTATC ATAAAACTAA TTGATATATC CTACAAAATT 23655 .......... .......... .......... .......... .......... .......... 255 TAAGTTGTCC CTTCCTAATT ATTATTCTTA GATATGCCAA GAATATTATC CTGAACTTTT 23595 ||| | || |||||| | || || .......... .......... .......... .ATAAG--AA -AATATTCTG ACAAAAATTC 281 TCGTAATTGA CTTAAGAATT ATGTAAAATC TTTTAATTTG ACCTTTTTTT TTTTTTTTCA 23535 || ||| | | || || | | || || || ||||||||| TCATAAATTA ATTTAG-ACT ATATATTAT- TTTTAATTT. .......... .......... 318 TTTTTCATGT AATTTTAATT AAAAAATATT ATTAGTTTAG ATATGTTTCT TCTTAATTGA 23475 .......... .......... .......... .......... .......... .......... 318 ATATGCTAGA AACGACATTT GTTGGAGACT TCCGCTTCTA ATAATGTAGA ATGAAACTCA 23415 .......... .......... .......... .......... .......... .......... 318 AATACGATAC ATAATCAATA TTTAGTCACT TTAATATTAG ATTGACCCAA AAATCTATTA 23355 || ||||| || ||| || .......... .......... .......... .......... CTT-ACCCAG TAAACTAATA 337 ATTTAATTGG TTAAGAAAAA GGTAAAATAA TTAATCTCCA ACTTTTTTTC GTTACGAAAA 23295 | | | | || | || || AATGAGTAGG TCAATAACTT T......... .......... .......... .......... 358 AGGCAAATCA TATACGCTCA CACCTTCCAA TCATTTTTAG GTTCCATAAG CAACTGTGTT 23235 .......... .......... .......... .......... .......... .......... 358 TGAGATTTTT TTATGTTTTT CAAGAACTTC TTATAGAAAG TAATGAAATT ATTTTGTTGA 23175 .......... .......... .......... .......... .......... .......... 358 AAGTCACGTT AACTGCTCAT GTTTTCGTAA GATCCATTAA TGTTTGGACA TATCTAACAA 23115 .......... .......... .......... .......... .......... .......... 358 AAGGATGAAA GTTGTTTACT TACAAATACT TAAAGGATGT ATTTTGCTAA AAATGATACT 23055 .......... .......... .......... .......... .......... .......... 358 TTACAGATGT AGTTTAAATT TGGGATATAG TTAAAGGATG TTTTCTGTTA AAACTGATTC 22995 .......... .......... .......... .......... .......... .......... 358 TTTAAAGATG TAGTATGAGT TTATAGTATA GTTGAAGGAT GTTTTAGAAA TATTATACAA 22935 .......... .......... .......... .......... .......... .......... 358 AATAAAAAAA ATAATACTCT ATTTGGCATA TACTCAATTA GACGAAATCG TAACCCTATT 22875 .......... .......... .......... .......... .......... .......... 358 ATTAAATACT TCTACAATAA TTTTGATAAA TATGTGCAAT AACAGGGCTA ATTGAAAAAG 22815 .......... .......... .......... .......... .......... .......... 358 TTTTTTAAAA AAACTATAAT GCGTAAGAAC TTATCTAAAC ACTTGTAATA TTTATGTGAC 22755 .......... .......... .......... .......... .......... .......... 358 ATACAATAAT TTATATATAT TTATTCATAT CTTACGAAAT ATACAACAAA TATTATATTG 22695 .......... .......... .......... .......... .......... .......... 358 TCAAATGAAG AAGAAAAAAT TAATTATCGA ATTACAATTA ACTACTATGT ATTTTAAAAA 22635 .......... .......... .......... .......... .......... .......... 358 GTTATGAAGA AAAATGTTAT AAGGAACTAG AGGAGTATTC CCCGTGTATA CAGCATAGTT 22575 .......... .......... .......... .......... .......... .......... 358 TATAGCTGAA AAAATATGGG AATCAGAGCC ATTTCTTTGT TATTGGTGAT TGATTGTAGA 22515 .......... .......... .......... .......... .......... .......... 358 GGAAAAATCA AAATGGGTTA TTGCTTTAAA ACTAAAATGT AAACTATGAT CTCTTAATGT 22455 .......... .......... .......... .......... .......... .......... 358 TATAGTTATA GTAGATCCTC ATATTTTTCA AAAGTCAATT TTTTCATATT TTTCAAAAGT 22395 .......... .......... .......... .......... .......... .......... 358 CATTTTTTTG TTTGGTTATA GTAGATTCTC ATATTTTTCA AATTTGATTG TAAAACTATC 22335 .......... .......... .......... .......... .......... .......... 358 CTTGCTTACT TTAGATATTT TTGCATGAAA ATATGATTGA AATGGTTGAA TTTCAACTAT 22275 .......... .......... .......... .......... .......... .......... 358 TTTTATATTT AAAACTAAAA TGATTGCTTA GCGTTCAGTT ACGGTAGATT TTCATATTTT 22215 .......... .......... .......... .......... .......... .......... 358 TCAAAAGATA ATTCATATTT TTCAAAAGTC ATTTTTTGTT GAAATTTCAC TATGCATTTG 22155 .......... .......... .......... .......... .......... .......... 358 ATTATAAACT TTAGGTATTT TTGCATGAAA TATGATTGAA TTTCAACTAC AAGTATAAGT 22095 .......... .......... .......... .......... .......... .......... 358 ATATGTATTT GCAATAAATT TTAAAGCGTT GAAGAATAAA TTAAGGACCA ATAAAATATA 22035 .......... .......... .......... .......... .......... .......... 358 AAGAAATATA ATTTTATTGA TGAAATAAAT GTAGATACAA ATTTGTTAAT CCCTTATTAT 21975 .......... .......... .......... .......... .......... .......... 358 TCTCTTTAAC TTCCACAAAT TATTACAGGA AAAATGCACT CATCATAAAA AAGGATTTAT 21915 .......... .......... .......... .......... .......... .......... 358 AAGAAATACA GTGTTTTTCA AAATTAACTT ACTATATGAT TCATTTTTTT TCATTTAACT 21855 .......... .......... .......... .......... .......... .......... 358 TGGTTACAGA ATCTCTAAAT AACGGTTTCC AGAGAGACTC TATGTGTATA CTTTCTATCC 21795 .......... .......... .......... .......... .......... .......... 358 ATTCTATTCT ATTGAGGTTA TACATCAAGA GGAATTTATT ATAGTTTAGA CTATTTCAAG 21735 .......... .......... .......... .......... .......... .......... 358 TACCAAAAAT CCTGTGTATT TGAGCATGAG ATTGGATATG CTTTCTTTGA GATCTGATAG 21675 .......... .......... .......... .......... .......... .......... 358 TAGTTATGGT GATTTATGAC ATTGAATCAT GATGAATTTG CTTTCATGTC ATGAATAACA 21615 .......... .......... .......... .......... .......... .......... 358 CATATTCGTC ATATTTCTTC TCAAGTAGAA TAAACTTTGG TAATTGTAAA ACCAGAAGCA 21555 .......... .......... .......... .......... .......... .......... 358 AAGAATTCAA ACTCGTAAAA GAAGTCAAAT GTGGAACAAG TCAGGTTTTT GAATGAAGAT 21495 .......... .......... .......... .......... .......... .......... 358 ATACAATCAA ACAGCTACTA CAGCTTTATC AACTTCATAG TTCTTTAACC TCATAAGCAG 21435 .......... .......... .......... .......... .......... .......... 358 CTTCATGAAC ACCGAGAGCA GCTCGACCGG ATGGATCTAG ATTCTTGGAC CAAGCGGCAT 21375 .......... .......... .......... .......... .......... .......... 358 CCCATTCTAC TGCTTTTGCA GTGCTGCAGG CCACACTTGG ACCACCAGGA ACAGTTTCTC 21315 .......... .......... .......... .......... .......... .......... 358 TTGCAGCAGC CTGCTCCAAA GAACAATTAA AATTATGATA TTACCCCTTA ATCAACAAAT 21255 .......... .......... .......... .......... .......... .......... 358 ACCAAGATAG AAGCAATCTT GTTAATGGCT CAAGTAATAT TGAAAAGAAA ATATTATTTG 21195 .......... .......... .......... .......... .......... .......... 358 GGAGAAAGTA TCATAAACTG TACATGAATA ATAAAGAAAA GAGACATGAA AGACCCACCT 21135 .......... .......... .......... .......... .......... .......... 358 TGGGGAAATA TCGCTCGAAA ATAGTTCTAT AGTAGTACCC TTCCTTGGTT GTGGGTGTGT 21075 .......... .......... .......... .......... .......... .......... 358 TATGAGGGTA AACAAAACTT GCATTCGCTA ACATAGAATC AGAAACCTGG ACCAAATGTA 21015 .......... .......... .......... .......... .......... .......... 358 CAATATGTGT TCAGCATTAC CACAAAAGGA AGGAAGAAGG ATTGGAAAAA GAGCGAAGAG 20955 .......... .......... .......... .......... .......... .......... 358 AAAAGGAACA AAAAAGCTCA CTTGACTGTT TGCGTGATCC TTCAAGCCAT CAATCCAACT 20895 .......... .......... .......... .......... .......... .......... 358 GTAGCCAACT CCATCACTGA ACTGTTCCTT CTGCCTATAC AAAATATGCT AAAAAAGAAA 20835 .......... .......... .......... .......... .......... .......... 358 ACAGAGGAGA CTCAACAACT TGATCATAAT GTCTTTTTAT TGTCATTTAT GGCTTTGAAC 20775 .......... .......... .......... .......... .......... .......... 358 TGATATATAT ATATATATAT AGGTCTTACA CATGCATGAG TAAGTTGGGA TTTTTGAACA 20715 .......... .......... .......... .......... .......... .......... 358 TATGATACCC TTGTATGTGA CACATACAAT ACACATCTGT GCACAATTAC ACAACGTATT 20655 .......... .......... .......... .......... .......... .......... 358 TGGGTTTTGC TTGCTTCTTT ATTTTTTGTT TTAACAAGGA GTCTGCTTGC CTATTTATTA 20595 .......... .......... .......... .......... .......... .......... 358 TGCAAATGAA TAAAAAATTT TGAATTTGGA TCTTATAGAA GAAAACTAAC AAACCTTTGG 20535 .......... .......... .......... .......... .......... .......... 358 CAGATAAGGA TTCTGATCAT CGTCAAAAGC ATTACGTACA ACCCACTTTT CTATTCTTCC 20475 .......... .......... .......... .......... .......... .......... 358 GAGGTCAGGT CGGATCTGTA ATGTTTCAAG AAAGAATTTT CAGTATATAA TAGTCACTGT 20415 .......... .......... .......... .......... .......... .......... 358 ACAGAGATAT ATTAAATTGT AGGATCATAC TAGATGTAAA GATGAAATCA GCAACATTAT 20355 .......... .......... .......... .......... .......... .......... 358 AATGAGGTTA TGTGTATGAA GCTATATTGT ATCCCATACA TCAGATCCGT TCAAGTAACA 20295 .......... .......... .......... .......... .......... .......... 358 CTGGACTTCT AATAAGGAGA TAAATACTTG AATGTACATT CCATTTGTTG CCTGGCAGAA 20235 || .......... .......... .......... .......... .......... ........AA 360 TTCTCTAGAC CTAACATAAG TCGCAGCAAG CTTGAGTTTA GAAATAACTT CAGAAACCTC 20175 || | | || || TTTCCCAAAC TTAG...... .......... .......... .......... .......... 374 AAAGAGCGAA ATAAATTAAA TCATGCTCCA GAAATGTGCT CATCTATTTA TAAACACAGG 20115 .......... .......... .......... .......... .......... .......... 374 AAAGTCAACA CAACATAAAC TCATGATAAA ACAAGATTGA ACTTGTCTCT ATGAAGAATG 20055 .......... .......... .......... .......... .......... .......... 374 GTTCAGTCAA CTTGTGTGCA CCTCAACTAA TCCACCAAGT ACTTGCAACT TCTCAGTAGC 19995 .......... .......... .......... .......... .......... .......... 374 TCATTTACTA GGTAACTCTG CATCAAGGCT TAAACATATG AGAAAAATTA CATAACATTT 19935 .......... .......... .......... .......... .......... .......... 374 TTTTTCTTGA GATTTGAACC CTGGTCTACC ACGACGTTGA AGACTGTTTT TCTACATAAC 19875 .......... .......... .......... .......... .......... .......... 374 TTGCAGTAAT CTTTTGACAT TTTTTTATGT AAGATGTCAT TTTATTGTTC CTTGAAGGAA 19815 .......... .......... .......... .......... .......... .......... 374 GAACAGGATT TATCTTTCTT TCTTGGTCTT TGTTAATCTA GATTTAATGG TTGGGTGAAG 19755 .......... .......... .......... .......... .......... .......... 374 GTGGGTTAGA GATTTAAG 19737 |||| ||||| || | || GTGGATTAGA CATGTTAG 392 hqPGS_C04HBa0077O05.1-_SGN-E578392- (25154 24900) ******************************************************************************** EST sequence 219 +strand 540 n (File: SGN-E253695+) 1 TCAAAATGGA CGGTTAAAGC TGAGGGAAAA AGTCAGCACC ATACAGATAA TTGTAAGATT 61 ATTGAGTTGA CACCATGGGA CATTCTTGAG CTTCAAATTG ACTACTTTCA AACTGGACTC 121 CTCTTCCTCA TGCCTGCATT TGAACAAGTA AGAGATCTAC TAAAAACAAC CAACACCAGT 181 TCCTTAATTG ATCATCTTAG AGTTTCACTA TCTCGAGCTT TAGAGCCTGT TTGGCTCAGC 241 TTAAAAGCTG GTCAAACTGA CTTAAAAGCT GGTTTTTGAC TTATTTAAAT GTTTGGCAAT 301 ACTCAAAATA GCTTATTTTA AGTTAAAAAA ACTTATTTTA AGCCAAAAGT GTGCTTTTTT 361 TTTTTAGCTT ATAAGCTGTT TTAAGTTGAC CATATTTTTA TGTTTTTTCC CTTAATATTT 421 TTATACAATC TCCAAATTAC CCATATAACA CTAACTTCTC TTTCTTCTAT TTTTCCCTTT 481 TCACGTTTGG CATAACAACT TCAACACTTT TATCCAAACG CATAATTGCT TATTTTAAAA Predicted gene structure (within gDNA segment 28116 to 24225): Exon 1 25304 24970 ( 335 n); cDNA 224 540 ( 317 n); score: 0.893 MATCH C04HBa0077O05.1- SGN-E253695+ 0.893 335 0.620 C PGS_C04HBa0077O05.1-_SGN-E253695+ (25304 24970) Alignment (genomic DNA sequence = upper lines): AGCCTGTTTG GCTCAGCTTA AAAGCTGGTC AAACTGACTT AAAAGCTGGT TTTTGACTTA 25245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCTGTTTG GCTCAGCTTA AAAGCTGGTC AAACTGACTT AAAAGCTGGT TTTTGACTTA 283 TTTAGTTGTT TGGCAATACT CAAAATAACT TACTTTAAGT TAAAAAAAAC TTATTTTAAG 25185 |||| |||| |||||||||| ||||||| || || ||||||| | |||||||| |||||||||| TTTAAATGTT TGGCAATACT CAAAATAGCT TATTTTAAGT T-AAAAAAAC TTATTTTAAG 342 CCAAAAGTTA AAAACTGGGG TAGGGGTGTT TTTTTTTTTT AGCTTATAAG CTGTTTTAAG 25125 || |||| | | ||| | |||||||||| |||||||||| |||||||||| CC-------- AAAA-----G T----GTGCT TTTTTTTTTT AGCTTATAAG CTGTTTTAAG 385 TTGACCACAT TTTTATCTTT TTGCCATTAA TATTTTTATG CAATCTCCAA ATTACTCATA 25065 ||||||| || |||||| ||| || || |||| ||||||||| |||||||||| ||||| |||| TTGACCATAT TTTTATGTTT TTTCCCTTAA TATTTTTATA CAATCTCCAA ATTACCCATA 445 TAACTCTAAC ATCTCTTTCT TCCATTTTTC CCTTTTCACG TTTGATATAA CAACTTCAGC 25005 |||| ||||| ||||||||| || ||||||| |||||||||| |||| |||| |||||||| | TAACACTAAC TTCTCTTTCT TCTATTTTTC CCTTTTCACG TTTGGCATAA CAACTTCAAC 505 ACTTTTATCC AAACGCATAA CTGCTTATTT TAAAA 24970 |||||||||| |||||||||| ||||||||| ||||| ACTTTTATCC AAACGCATAA TTGCTTATTT TAAAA 540 hqPGS_C04HBa0077O05.1-_SGN-E253695+ (25304 24970) ******************************************************************************** EST sequence 290 +strand 618 n (File: SGN-E249253+) 1 GGTTACCAGT TCAAGTCCCG TTTCCGGCAA CTTTTCCGGT TATTAAGCTG TTCCGCCGCT 61 GAGCACACTG ATTTAACTTC AGATTTACCC AATACAGAGG TGATTGAAAG CTATGGCTTC 121 CAAGGTATCC ATCATTTCAA AATGGACGGT TAAAGCTGAG GGAAAAAGTC AGCACCATAC 181 AGATAATTGT AAGATTATTG AGTTGACACC ATGGGACATT CTTGAGCTTC AAATTGACTA 241 CTTTCAAACT GGACTCCTCT TCCTCATGCC TGCATTTGAA CAAGTAAGAG ATCTACTAAA 301 AACAACCAAC ACCAGTTCCT TAATTGATCA TCTTAGAGTT TCACTATCTC GAGCTTTAGA 361 GCCTGTTTGG CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT 421 TTAAATGTTT GGCAATACTC AAAATAGCTT ATTTTAAGTT AAAAAAACTT ATTTTAAGCC 481 AAAAGTGTGC CTTTTTTTTT TAGCTTATAA GCTGTTTTAA GTTGACCATA TTTTTATGTT 541 TTTTCCCTTA ATATTTTTAT ACAATCTCCA AATTACCCAT ATAACACTAA CTTCTCTTTC 601 TTCTATTTTT CCCTTTTC Predicted gene structure (within gDNA segment 29476 to 23608): Exon 1 25304 25028 ( 277 n); cDNA 360 618 ( 259 n); score: 0.881 MATCH C04HBa0077O05.1- SGN-E249253+ 0.881 277 0.448 C PGS_C04HBa0077O05.1-_SGN-E249253+ (25304 25028) Alignment (genomic DNA sequence = upper lines): AGCCTGTTTG GCTCAGCTTA AAAGCTGGTC AAACTGACTT AAAAGCTGGT TTTTGACTTA 25245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCTGTTTG GCTCAGCTTA AAAGCTGGTC AAACTGACTT AAAAGCTGGT TTTTGACTTA 419 TTTAGTTGTT TGGCAATACT CAAAATAACT TACTTTAAGT TAAAAAAAAC TTATTTTAAG 25185 |||| |||| |||||||||| ||||||| || || ||||||| | |||||||| |||||||||| TTTAAATGTT TGGCAATACT CAAAATAGCT TATTTTAAGT T-AAAAAAAC TTATTTTAAG 478 CCAAAAGTTA AAAACTGGGG TAGGGGTGTT TTTTTTTTTT AGCTTATAAG CTGTTTTAAG 25125 ||||||| | | | | |||||||||| |||||||||| |||||||||| CCAAAAG--- -----T---G T------GCC TTTTTTTTTT AGCTTATAAG CTGTTTTAAG 521 TTGACCACAT TTTTATCTTT TTGCCATTAA TATTTTTATG CAATCTCCAA ATTACTCATA 25065 ||||||| || |||||| ||| || || |||| ||||||||| |||||||||| ||||| |||| TTGACCATAT TTTTATGTTT TTTCCCTTAA TATTTTTATA CAATCTCCAA ATTACCCATA 581 TAACTCTAAC ATCTCTTTCT TCCATTTTTC CCTTTTC 25028 |||| ||||| ||||||||| || ||||||| ||||||| TAACACTAAC TTCTCTTTCT TCTATTTTTC CCTTTTC 618 hqPGS_C04HBa0077O05.1-_SGN-E249253+ (25304 25028) ******************************************************************************** EST sequence 13 -strand 528 n (File: SGN-E242674-) 1 GGTATTTAAG TGGAGATACG TAAAAAGACA AAATTATTAT CTCTGTGTTA CATAGTTGCA 61 AGTTGCAACT ATTTCTAACA ATCGACTCTA GATGATTTTT TTCGATTAAA ATAATAAAAA 121 AAGAAATTTA TATGAATAGT TATTTTTTTA ACCAAAGTGC ATAAATTGGA AACTCATAAA 181 TTTGTGACTT AGGTTACATG GTTGAGAACT GCCTCAAACT TATAATGTCT ACTATTTAAG 241 TGGAGATACG TAAAAGAAAA AATTATTGTC TAAGAGCTTG TTTAGTTCAG CTTAAAAGCT 301 GATCAAACTG ACTTAAAAAC TGATTTTTGA CTTATTTAGT TGTTTGGCAA TACTCAAAAT 361 AACTTATTTT AAGTTAAAAA AAAAAACTTA TTTTAAGCCA AAAGTTAAAA GCTGGGGTAG 421 GGGTGCTTTT TTTTTAGCTT ATAAGCTGTT TTAAGTTGAC CACATTTTTA TCTTTTTGCC 481 CTTAATATTT TTATACAATC TCCAAATTAT CCACATAACT CTAACATC Predicted gene structure (within gDNA segment 28906 to 24020): Exon 1 25304 25052 ( 253 n); cDNA 275 528 ( 254 n); score: 0.907 MATCH C04HBa0077O05.1- SGN-E242674- 0.907 253 0.479 C PGS_C04HBa0077O05.1-_SGN-E242674- (25304 25052) Alignment (genomic DNA sequence = upper lines): AGCCTGTTTG GCTCAGCTTA AAAGCTGGTC AAACTGACTT AAAAGCTGGT TTTTGACTTA 25245 ||| ||||| | |||||||| ||||||| || |||||||||| |||| ||| | |||||||||| AGCTTGTTTA GTTCAGCTTA AAAGCTGATC AAACTGACTT AAAAACTGAT TTTTGACTTA 334 TTTAGTTGTT TGGCAATACT CAAAATAACT TACTTTAAGT T---AAAAAA AACTTATTTT 25188 |||||||||| |||||||||| |||||||||| || ||||||| | |||||| |||||||||| TTTAGTTGTT TGGCAATACT CAAAATAACT TATTTTAAGT TAAAAAAAAA AACTTATTTT 394 AAGCCAAAAG TTAAAAACTG GGGTAGGGGT GTTTTTTTTT TTTAGCTTAT AAGCTGTTTT 25128 |||||||||| |||||| ||| |||||||||| | |||||| |||||||||| |||||||||| AAGCCAAAAG TTAAAAGCTG GGGTAGGGGT G--CTTTTTT TTTAGCTTAT AAGCTGTTTT 452 AAGTTGACCA CATTTTTATC TTTTTGCCAT TAATATTTTT ATGCAATCTC CAAATTACTC 25068 |||||||||| |||||||||| |||||||| | |||||||||| || ||||||| ||||||| | AAGTTGACCA CATTTTTATC TTTTTGCCCT TAATATTTTT ATACAATCTC CAAATTATCC 512 ATATAACTCT AACATC 25052 | |||||||| |||||| ACATAACTCT AACATC 528 hqPGS_C04HBa0077O05.1-_SGN-E242674- (25304 25052) ******************************************************************************** EST sequence 45 -strand 643 n (File: SGN-E233074-) 1 TAGGTGTTAG TTGATAAATA TTAAGCGTTA AATTCGATTT TTTATATATA AGTTTTCTAG 61 TGCTTAAATA TAATTGGGAA GGTCAAGGGG TTTGTGACTT AAGTTAGTGA TGTCTGGTAT 121 TTAAGTGGAG ATACGTAAAA AGACAAAATT ATTATCTCTG TGTTACATAG TTGCAAGTTG 181 CAACTATTTC TAACAATCGA CTCTAGATGA TTTTTTTCGA TTAAAATAAT AAAAAAAGAA 241 ATTTATATGA ATAGTTATTT TTTTAACCAA AGTGCATAAA TTGGAAACTC ATAAATTTGT 301 GACTTAGGTT ACATGGTTGA GAACTGCCTC AAACTTATAA TGTCTACTAT TTAAGTGGAG 361 ATACGTAAAA GAAAAAATTA TTGTCTAAGA GCTTGTTTAG TTCAGCTTAA AAGCTGATCA 421 AACTGACTTA AAAACTGATT TTTGACTTAT TTAGTTGTTT GGCAATACTC AAAATAACTT 481 ATTTTAAGTT AAAAAAAAAA ACTTATTTTA AGCCAAAAGT TAAAAGCTGG GGTAGGGGTG 541 CTTTTTTTTT AGCTTATAAG CTGTTTTAAG TTGACCACAT TTTTATCTTT TTGCCCTTAA 601 TATTTTTATA CAATCTCCAA ATTATCCACA TAACTCTAAC ATC Predicted gene structure (within gDNA segment 30056 to 24020): Exon 1 25304 25052 ( 253 n); cDNA 390 643 ( 254 n); score: 0.907 MATCH C04HBa0077O05.1- SGN-E233074- 0.907 253 0.393 C PGS_C04HBa0077O05.1-_SGN-E233074- (25304 25052) Alignment (genomic DNA sequence = upper lines): AGCCTGTTTG GCTCAGCTTA AAAGCTGGTC AAACTGACTT AAAAGCTGGT TTTTGACTTA 25245 ||| ||||| | |||||||| ||||||| || |||||||||| |||| ||| | |||||||||| AGCTTGTTTA GTTCAGCTTA AAAGCTGATC AAACTGACTT AAAAACTGAT TTTTGACTTA 449 TTTAGTTGTT TGGCAATACT CAAAATAACT TACTTTAAGT T---AAAAAA AACTTATTTT 25188 |||||||||| |||||||||| |||||||||| || ||||||| | |||||| |||||||||| TTTAGTTGTT TGGCAATACT CAAAATAACT TATTTTAAGT TAAAAAAAAA AACTTATTTT 509 AAGCCAAAAG TTAAAAACTG GGGTAGGGGT GTTTTTTTTT TTTAGCTTAT AAGCTGTTTT 25128 |||||||||| |||||| ||| |||||||||| | |||||| |||||||||| |||||||||| AAGCCAAAAG TTAAAAGCTG GGGTAGGGGT G--CTTTTTT TTTAGCTTAT AAGCTGTTTT 567 AAGTTGACCA CATTTTTATC TTTTTGCCAT TAATATTTTT ATGCAATCTC CAAATTACTC 25068 |||||||||| |||||||||| |||||||| | |||||||||| || ||||||| ||||||| | AAGTTGACCA CATTTTTATC TTTTTGCCCT TAATATTTTT ATACAATCTC CAAATTATCC 627 ATATAACTCT AACATC 25052 | |||||||| |||||| ACATAACTCT AACATC 643 hqPGS_C04HBa0077O05.1-_SGN-E233074- (25304 25052) ******************************************************************************** EST sequence 100 -strand 310 n (File: SGN-E233594-) 1 CTTATAATGT CTACTATTTA AGTGGAGATA CGTAAAAGAA AAAATTATTG TCTAAGAGCT 61 TGTTTAGTTC AGCTTAAAAG CTGATCAAAC TGACTTAAAA ACTGATTTTT GACTTATTTA 121 GTTGTTTGGC AATACTCAAA ATAACTTATT TTAAGTTAAA AAAAAAAACT TATTTTAAGC 181 CAAAAGTTAA AAGCTGGGGT AGGGGTGCTT TTTTTTTAGC TTATAAGCTG TTTTAAGTTG 241 ACCACATTTT TATCTTTTTG CCCTTAATAT TTTTATACAA TCTCCAAATT ATCCACATAA 301 CTCTAACATC Predicted gene structure (within gDNA segment 26726 to 24020): Exon 1 25304 25052 ( 253 n); cDNA 57 310 ( 254 n); score: 0.907 MATCH C04HBa0077O05.1- SGN-E233594- 0.907 253 0.816 C PGS_C04HBa0077O05.1-_SGN-E233594- (25304 25052) Alignment (genomic DNA sequence = upper lines): AGCCTGTTTG GCTCAGCTTA AAAGCTGGTC AAACTGACTT AAAAGCTGGT TTTTGACTTA 25245 ||| ||||| | |||||||| ||||||| || |||||||||| |||| ||| | |||||||||| AGCTTGTTTA GTTCAGCTTA AAAGCTGATC AAACTGACTT AAAAACTGAT TTTTGACTTA 116 TTTAGTTGTT TGGCAATACT CAAAATAACT TACTTTAAGT T---AAAAAA AACTTATTTT 25188 |||||||||| |||||||||| |||||||||| || ||||||| | |||||| |||||||||| TTTAGTTGTT TGGCAATACT CAAAATAACT TATTTTAAGT TAAAAAAAAA AACTTATTTT 176 AAGCCAAAAG TTAAAAACTG GGGTAGGGGT GTTTTTTTTT TTTAGCTTAT AAGCTGTTTT 25128 |||||||||| |||||| ||| |||||||||| | |||||| |||||||||| |||||||||| AAGCCAAAAG TTAAAAGCTG GGGTAGGGGT G--CTTTTTT TTTAGCTTAT AAGCTGTTTT 234 AAGTTGACCA CATTTTTATC TTTTTGCCAT TAATATTTTT ATGCAATCTC CAAATTACTC 25068 |||||||||| |||||||||| |||||||| | |||||||||| || ||||||| ||||||| | AAGTTGACCA CATTTTTATC TTTTTGCCCT TAATATTTTT ATACAATCTC CAAATTATCC 294 ATATAACTCT AACATC 25052 | |||||||| |||||| ACATAACTCT AACATC 310 hqPGS_C04HBa0077O05.1-_SGN-E233594- (25304 25052) ******************************************************************************** EST sequence 101 -strand 514 n (File: SGN-E233735-) 1 GATACGTAAA AAGACAAAAT TATTATCTCT GTGTTACATA GTTGCAAGTT GCAACTATTT 61 CTAACAATCG ACTCTAGATG ATTTTTTTCG ATTAAAATAA TAAAAAAAGA AATTTATATG 121 AATAGTTATT TTTTTAACCA AAGTGCATAA ATTGGAAACT CATAAATTTG TGACTTAGGT 181 TACATGGTTG AGAACTGCCT CAAACTTATA ATGTCTACTA TTTAAGTGGA GATACGTAAA 241 AGAAAAAATT ATTGTCTAAG AGCTTGTTTA GTTCAGCTTA AAAGCTGATC AAACTGACTT 301 AAAAACTGAT TTTTGACTTA TTTAGTTGTT TGGCAATACT CAAAATAACT TATTTTAAGT 361 TAAAAAAAAA AACTTATTTT AAGCCAAAAG TTAAAAGCTG GGGTAGGGGT GCTTTTTTTT 421 TAGCTTATAA GCTGTTTTAA GTTGACCACA TTTTTATCTT TTTGCCCTTA ATATTTTTAT 481 ACAATCTCCA AATTATCCAC ATAACTCTAA CATC Predicted gene structure (within gDNA segment 28766 to 24020): Exon 1 25304 25052 ( 253 n); cDNA 261 514 ( 254 n); score: 0.907 MATCH C04HBa0077O05.1- SGN-E233735- 0.907 253 0.492 C PGS_C04HBa0077O05.1-_SGN-E233735- (25304 25052) Alignment (genomic DNA sequence = upper lines): AGCCTGTTTG GCTCAGCTTA AAAGCTGGTC AAACTGACTT AAAAGCTGGT TTTTGACTTA 25245 ||| ||||| | |||||||| ||||||| || |||||||||| |||| ||| | |||||||||| AGCTTGTTTA GTTCAGCTTA AAAGCTGATC AAACTGACTT AAAAACTGAT TTTTGACTTA 320 TTTAGTTGTT TGGCAATACT CAAAATAACT TACTTTAAGT T---AAAAAA AACTTATTTT 25188 |||||||||| |||||||||| |||||||||| || ||||||| | |||||| |||||||||| TTTAGTTGTT TGGCAATACT CAAAATAACT TATTTTAAGT TAAAAAAAAA AACTTATTTT 380 AAGCCAAAAG TTAAAAACTG GGGTAGGGGT GTTTTTTTTT TTTAGCTTAT AAGCTGTTTT 25128 |||||||||| |||||| ||| |||||||||| | |||||| |||||||||| |||||||||| AAGCCAAAAG TTAAAAGCTG GGGTAGGGGT G--CTTTTTT TTTAGCTTAT AAGCTGTTTT 438 AAGTTGACCA CATTTTTATC TTTTTGCCAT TAATATTTTT ATGCAATCTC CAAATTACTC 25068 |||||||||| |||||||||| |||||||| | |||||||||| || ||||||| ||||||| | AAGTTGACCA CATTTTTATC TTTTTGCCCT TAATATTTTT ATACAATCTC CAAATTATCC 498 ATATAACTCT AACATC 25052 | |||||||| |||||| ACATAACTCT AACATC 514 hqPGS_C04HBa0077O05.1-_SGN-E233735- (25304 25052) ******************************************************************************** EST sequence 102 -strand 484 n (File: SGN-E377238-) 1 GTGTTACATA GTTGCAAGTT GCAACTATTT CTAACAATCG ACTCTAGATG ATTTTTTTCG 61 ATTAAAATAA TAAAAAAAGA AATTTATATG AATAGTTATT TTTTTAACCA AAGTGCATAA 121 ATTGGAAACT CATAAATTTG TGACTTAGGT TACATGGTTG AGAACTGCCT CAAACTTATA 181 ATGTCTACTA TTTAAGTGGA GATACGTAAA AGAAAAAATT ATTGTCTAAG AGCTTGTTTA 241 GTTCAGCTTA AAAGCTGATC AAACTGACTT AAAAACTGAT TTTTGACTTA TTTAGTTGTT 301 TGGCAATACT CAAAATAACT TATTTTAAGT TAAAAAAAAA AACTTATTTT AAGCCAAAAG 361 TTAAAAGCTG GGGTAGGGGT GCTTTTTTTT TAGCTTATAA GCTGTTTTAA GTTGACCACA 421 TTTTTATCTT TTTGCCCTTA ATATTTTTAT ACAATCTCCA AATTATCCAC ATAACTCTAA 481 CATC Predicted gene structure (within gDNA segment 28466 to 24020): Exon 1 25304 25052 ( 253 n); cDNA 231 484 ( 254 n); score: 0.907 MATCH C04HBa0077O05.1- SGN-E377238- 0.907 253 0.523 C PGS_C04HBa0077O05.1-_SGN-E377238- (25304 25052) Alignment (genomic DNA sequence = upper lines): AGCCTGTTTG GCTCAGCTTA AAAGCTGGTC AAACTGACTT AAAAGCTGGT TTTTGACTTA 25245 ||| ||||| | |||||||| ||||||| || |||||||||| |||| ||| | |||||||||| AGCTTGTTTA GTTCAGCTTA AAAGCTGATC AAACTGACTT AAAAACTGAT TTTTGACTTA 290 TTTAGTTGTT TGGCAATACT CAAAATAACT TACTTTAAGT T---AAAAAA AACTTATTTT 25188 |||||||||| |||||||||| |||||||||| || ||||||| | |||||| |||||||||| TTTAGTTGTT TGGCAATACT CAAAATAACT TATTTTAAGT TAAAAAAAAA AACTTATTTT 350 AAGCCAAAAG TTAAAAACTG GGGTAGGGGT GTTTTTTTTT TTTAGCTTAT AAGCTGTTTT 25128 |||||||||| |||||| ||| |||||||||| | |||||| |||||||||| |||||||||| AAGCCAAAAG TTAAAAGCTG GGGTAGGGGT G--CTTTTTT TTTAGCTTAT AAGCTGTTTT 408 AAGTTGACCA CATTTTTATC TTTTTGCCAT TAATATTTTT ATGCAATCTC CAAATTACTC 25068 |||||||||| |||||||||| |||||||| | |||||||||| || ||||||| ||||||| | AAGTTGACCA CATTTTTATC TTTTTGCCCT TAATATTTTT ATACAATCTC CAAATTATCC 468 ATATAACTCT AACATC 25052 | |||||||| |||||| ACATAACTCT AACATC 484 hqPGS_C04HBa0077O05.1-_SGN-E377238- (25304 25052) ******************************************************************************** EST sequence 139 -strand 434 n (File: SGN-E240879-) 1 ATTTTTTTCG ATTAAAATAA TAAAAAAAGA AATTTATATG AATAGTTATT TTTTTAACCA 61 AAGTGCATAA ATTGGAAACT CATAAATTTG TGACTTAGGT TACATGGTTG AGAACTGCCT 121 CAAACTTATA ATGTCTACTA TTTAAGTGGA GATACGTAAA AGAAAAAATT ATTGTCTAAG 181 AGCTTGTTTA GTTCAGCTTA AAAGCTGATC AAACTGACTT AAAAACTGAT TTTTGACTTA 241 TTTAGTTGTT TGGCAATACT CAAAATAACT TATTTTAAGT TAAAAAAAAA AACTTATTTT 301 AAGCCAAAAG TTAAAAGCTG GGGTAGGGGT GCTTTTTTTT TAGCTTATAA GCTGTTTTAA 361 GTTGACCACA TTTTTATCTT TTTGCCCTTA ATATTTTTAT ACAATCTCCA AATTATCCAC 421 ATAACTCTAA CATC Predicted gene structure (within gDNA segment 27966 to 24020): Exon 1 25304 25052 ( 253 n); cDNA 181 434 ( 254 n); score: 0.907 MATCH C04HBa0077O05.1- SGN-E240879- 0.907 253 0.583 C PGS_C04HBa0077O05.1-_SGN-E240879- (25304 25052) Alignment (genomic DNA sequence = upper lines): AGCCTGTTTG GCTCAGCTTA AAAGCTGGTC AAACTGACTT AAAAGCTGGT TTTTGACTTA 25245 ||| ||||| | |||||||| ||||||| || |||||||||| |||| ||| | |||||||||| AGCTTGTTTA GTTCAGCTTA AAAGCTGATC AAACTGACTT AAAAACTGAT TTTTGACTTA 240 TTTAGTTGTT TGGCAATACT CAAAATAACT TACTTTAAGT T---AAAAAA AACTTATTTT 25188 |||||||||| |||||||||| |||||||||| || ||||||| | |||||| |||||||||| TTTAGTTGTT TGGCAATACT CAAAATAACT TATTTTAAGT TAAAAAAAAA AACTTATTTT 300 AAGCCAAAAG TTAAAAACTG GGGTAGGGGT GTTTTTTTTT TTTAGCTTAT AAGCTGTTTT 25128 |||||||||| |||||| ||| |||||||||| | |||||| |||||||||| |||||||||| AAGCCAAAAG TTAAAAGCTG GGGTAGGGGT G--CTTTTTT TTTAGCTTAT AAGCTGTTTT 358 AAGTTGACCA CATTTTTATC TTTTTGCCAT TAATATTTTT ATGCAATCTC CAAATTACTC 25068 |||||||||| |||||||||| |||||||| | |||||||||| || ||||||| ||||||| | AAGTTGACCA CATTTTTATC TTTTTGCCCT TAATATTTTT ATACAATCTC CAAATTATCC 418 ATATAACTCT AACATC 25052 | |||||||| |||||| ACATAACTCT AACATC 434 hqPGS_C04HBa0077O05.1-_SGN-E240879- (25304 25052) ******************************************************************************** EST sequence 116 -strand 666 n (File: SGN-E237992-) 1 TTTCCAAATG AAACAAAAGA CAATTAGGTG TTAGTTGATA AATATTAAGC GTTAAATTCG 61 ATTTTTTATA TATAAGTTTT CTAGTGCTTA AATATAATTG GGAAGGTCAA GGGGTTTGTG 121 ACTTAAGTTA GTGATGTCTG GTATTTAAGT GGAGATACGT AAAAAGACAA AATTATTATC 181 TCTGTGTTAC ATAGTTGCAA GTTGCAACTA TTTCTAACAA TCGACTCTAG ATGATTTTTT 241 TCGATTAAAA TAATAAAAAA AGAAATTTAT ATGAATAGTT ATTTTTTTAA CCAAAGTGCA 301 TAAATTGGAA ACTCATAAAT TTGTGACTTA GGTTACATGG TTGAGAACTG CCTCAAACTT 361 ATAATGTCTA CTATTTAAGT GGAGATACGT AAAAGAAAAA ATTATTGTCT AAGAGCTTGT 421 TTAGTTCAGC TTAAAAGCTG ATCAAACTGA CTTAAAAACT GATTTTTGAC TTATTTAGTT 481 GTTTGGCAAT ACTCAAAATA ACTTATTTTA AGTTAAAAAA AAAAACTTAT TTTAAGCCAA 541 AAGTTAAAAG CTGGGGTAGG GGTGCTTTTT TTTTAGCTTA TAAGCTGTTT TAAGTTGACC 601 ACATTTTTAT CTTTTTGCCC TTAATATTTT TATACAATCT CCAAATTATC CACATAACTC 661 TAACAT Predicted gene structure (within gDNA segment 30296 to 24030): Exon 1 25304 25053 ( 252 n); cDNA 414 666 ( 253 n); score: 0.907 MATCH C04HBa0077O05.1- SGN-E237992- 0.907 252 0.378 C PGS_C04HBa0077O05.1-_SGN-E237992- (25304 25053) Alignment (genomic DNA sequence = upper lines): AGCCTGTTTG GCTCAGCTTA AAAGCTGGTC AAACTGACTT AAAAGCTGGT TTTTGACTTA 25245 ||| ||||| | |||||||| ||||||| || |||||||||| |||| ||| | |||||||||| AGCTTGTTTA GTTCAGCTTA AAAGCTGATC AAACTGACTT AAAAACTGAT TTTTGACTTA 473 TTTAGTTGTT TGGCAATACT CAAAATAACT TACTTTAAGT T---AAAAAA AACTTATTTT 25188 |||||||||| |||||||||| |||||||||| || ||||||| | |||||| |||||||||| TTTAGTTGTT TGGCAATACT CAAAATAACT TATTTTAAGT TAAAAAAAAA AACTTATTTT 533 AAGCCAAAAG TTAAAAACTG GGGTAGGGGT GTTTTTTTTT TTTAGCTTAT AAGCTGTTTT 25128 |||||||||| |||||| ||| |||||||||| | |||||| |||||||||| |||||||||| AAGCCAAAAG TTAAAAGCTG GGGTAGGGGT G--CTTTTTT TTTAGCTTAT AAGCTGTTTT 591 AAGTTGACCA CATTTTTATC TTTTTGCCAT TAATATTTTT ATGCAATCTC CAAATTACTC 25068 |||||||||| |||||||||| |||||||| | |||||||||| || ||||||| ||||||| | AAGTTGACCA CATTTTTATC TTTTTGCCCT TAATATTTTT ATACAATCTC CAAATTATCC 651 ATATAACTCT AACAT 25053 | |||||||| ||||| ACATAACTCT AACAT 666 hqPGS_C04HBa0077O05.1-_SGN-E237992- (25304 25053) ******************************************************************************** EST sequence 110 -strand 748 n (File: SGN-E544203-) 1 AAAGATTTAT CAAAATACTC GTTGCCTATT CATAGGCGGA TTGTCCAGTA TAAAACTGCT 61 TATTATTCAT TTTATCTCCC AGTGGCATGT GCACTTCTTA TGGCAGGAGA GAATCTTGAC 121 AATCATGTTA ATGTCAAGAA CATACTACTC GAAATGGGAA TATATTTCCA AGTTCAGGAT 181 GATTACTTGG ACTGCTTTGC TGATCCAGAG GTATTGGGTA AGATTGGCAC GGATATTCAA 241 GATTTCAAGT GCTCTTGGTT GGTAGTGAAA GCCCTAGAAC ACTGCAATGA TGAGCAAAAA 301 AAGTTATTAC ATGAAAACTA TGGAAAAGAT GACCCTGCTT GTGTTGCTAA AGTAAAGGCG 361 CTCTACAATG ATCTCAAACT TGAGGATGTG TACCTGGAAT ATGAGAGGAG TACATATGAA 421 AAGCTGATCA ACTCCATTGA AGCTCAACCA AGCAAAGCAG TGCAAGCAGT TCTGAAGTCA 481 TTCTTGGCAA AGATATACAA AAGGCAGAAG TAGGAGATAA AGAACTTGTT TGGTTCAGCT 541 TAAAAGCTGG TCAAACTAAC TTAAAAGCTA ATTTTTGACT TATTTAGTTG TTTGGCAATC 601 CTCAAAATAA CTTATTTTAA GTTTTAAAAA AAACTTATTT TAAGCCAAAA GTTAAAAGCT 661 GGGGTAAGAG TGCTTCTTTT TTTCAACTTA TAAACTATTT TAAGTTGACC ACATTTTTAC 721 CTTTTTAAAA AAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 31242 to 23662): Exon 1 29568 29549 ( 20 n); cDNA 472 491 ( 20 n); score: 0.650 Intron 1 29548 25581 (3968 n); Pd: 0.000 (s: 0), Pa: 0.905 (s: 0) Exon 2 25580 25550 ( 31 n); cDNA 492 522 ( 31 n); score: 0.484 Intron 2 25549 25305 ( 245 n); Pd: 0.292 (s: 0), Pa: 0.252 (s: 0.88) Exon 3 25304 25103 ( 202 n); cDNA 523 726 ( 204 n); score: 0.886 PPA cDNA 727 748 MATCH C04HBa0077O05.1- SGN-E544203- 0.886 253 0.338 C PGS_C04HBa0077O05.1-_SGN-E544203- (29568 29549,25580 25550,25304 25103) Alignment (genomic DNA sequence = upper lines): CTGTAGTCAG ACGAGGAAAT GTGCCTATTT ACAATGAGGC ATCCATGCAG GGAGCCACAG 29509 ||| ||||| | || || CTGAAGTCAT TCTTGGCAAA .......... .......... .......... .......... 491 TAGTCGCATG TTGTACCTCC GGAGCCTGAG GTGCTGGTGC AGAAAACACT GGAGGTGTCT 29449 .......... .......... .......... .......... .......... .......... 491 GGCCTTGATC AGATAGCCCG CTAAGATAAG CAAGAACCTG ATTGATCATC TCTGGGGTAG 29389 .......... .......... .......... .......... .......... .......... 491 GTTGGGGTGG CAATTCCTCA TTCTGTACTT GCTCATTTTC CCTTTCCTCA CCCTCTCTTA 29329 .......... .......... .......... .......... .......... .......... 491 CCACTTCCTC AGTTGGTGGA GGAGTCACCG CCCTAGTACC AGATGGGCTA GGTGCTCGTC 29269 .......... .......... .......... .......... .......... .......... 491 CTCTTCTCCT AGAGGACGTC CTCCCACGAT CTCTTCCGCG GCCTCTTGCC ACTGCTCCTC 29209 .......... .......... .......... .......... .......... .......... 491 TTCGAGCTAC AGTCTCAGTG GCTGGCTCAG ATGCATCTTG TCTTGCTGAT GTTGATGTTG 29149 .......... .......... .......... .......... .......... .......... 491 GCGCGGTCGT TGCTCTAGTT CTAACCATCT GCGAAATAGA GTGAAGATGG TCAGATACCA 29089 .......... .......... .......... .......... .......... .......... 491 ATTTGTATCA CCTAGATACC AATTGGATCC AAGTAATAAC ACAAAAGAAA GAAAGAAAGA 29029 .......... .......... .......... .......... .......... .......... 491 ATGGAATTTT CCTAAAGTCT TATAGCCTCT CAAAGAAAAG TAAAGGCGTC CCCCTACCGT 28969 .......... .......... .......... .......... .......... .......... 491 TCCTTAAGAC TCTACTAGAC TCGTTCTTGT GTGATGAGAC CAACGAACCT AATGCTCTGA 28909 .......... .......... .......... .......... .......... .......... 491 TACCAAGTTT GTCACGACCC AAATCGGGTC GCGACTGGCA CCCACACTTA CCCTCCTATG 28849 .......... .......... .......... .......... .......... .......... 491 TGAGCGAACC AACCAATCTA AACCTTAACA TTTCAATATA ATATCAACAG AAAGTAATGC 28789 .......... .......... .......... .......... .......... .......... 491 GGAAGACTTA AACTCATTAA TAAAAACCAA TTCAATAACT TCTAAAAACT CAACAACTAT 28729 .......... .......... .......... .......... .......... .......... 491 TATTATCCCC AAAATCTGGA AGTCATTATC ACAAGAACAT CTACTTCAAA TTACTAAATC 28669 .......... .......... .......... .......... .......... .......... 491 TAAGAGTATC TAAGAAGTTA AAATACATAA ACAGCTAGTC CATGCCGGAA CTTCAAGGCA 28609 .......... .......... .......... .......... .......... .......... 491 TCAAGACATA AAGAAGAAGA TCCAGTCCAA GCTAGAAGCT TTAGCTCACC CTGAAATCTA 28549 .......... .......... .......... .......... .......... .......... 491 GTGTGATGAA GACTGGCTAG AGTTGCGGTT GGATTGAAGA CGACGATACG TTTGCTGCAC 28489 .......... .......... .......... .......... .......... .......... 491 TCCACAATGA ACAAAAAGAA AACATACAAG TAGGGGTCAG TAGAAAACAC GAGTACTGAG 28429 .......... .......... .......... .......... .......... .......... 491 TAGATATCAT CGGCCAACTC AAAATAGAAA ACAGTATATA TCAGATAATA TCATAAAATC 28369 .......... .......... .......... .......... .......... .......... 491 AACTACAGTA CTTAACATGC AACATTTACA ATTACCATAA CCCTTGGTCA TAACACCAAA 28309 .......... .......... .......... .......... .......... .......... 491 CTCATCAATG AGGACTCACA CCTCCCCATC ATACTCATTT GGGAATTAGG TTCATTAAAT 28249 .......... .......... .......... .......... .......... .......... 491 TAAGTATATT AACATATTTC AAGATTCATT CTCTTTACTA ATCCTGGTGC CGGAACGTGA 28189 .......... .......... .......... .......... .......... .......... 491 CACTCCGATC CTCATATACT ATCCTGGTAC CAGAATGTGG CACCCGATCC ATATACTATC 28129 .......... .......... .......... .......... .......... .......... 491 CTGGTGTCGG AACGTGACAC TCCGATCCTC ATAAACTATC CTGGTACCGG AACGTGGCAC 28069 .......... .......... .......... .......... .......... .......... 491 CCGATCCATA TACTATCCTG GTGTCGGAAC GTGACACCCG ATCCATATAC TATCCTGGTG 28009 .......... .......... .......... .......... .......... .......... 491 TCGGAACTTG ACACTCCGAT CCTCACATAC TATCCTGGTA CCGGAACGTG GCACCCGATC 27949 .......... .......... .......... .......... .......... .......... 491 CATATACTAT TCTGGTGTCG GAACGTGACA CTCCGATCCT CATATACTAT CCTGGTACCG 27889 .......... .......... .......... .......... .......... .......... 491 GAACGTGGCA CCCGATCCCC TAATCTCACT ACTTTCGTTC ATCAAGCCTT CTTTTATACC 27829 .......... .......... .......... .......... .......... .......... 491 AAGGCATCAT CATTAACAAA GTAGATTAGG GCTTTTCAAG ATTTAAGATT CAAGAGCTTC 27769 .......... .......... .......... .......... .......... .......... 491 ATCATGCTTA TTCATCACAA TTATATAATC ACATCATGTA AGGATACAAT TAATCACATA 27709 .......... .......... .......... .......... .......... .......... 491 GAAGGGTTTA CAACACTACC CAATACATAT CATTCGCTAT TAAGAGTTTA CTACGAATAG 27649 .......... .......... .......... .......... .......... .......... 491 TATAAAAACC ATAACCTACC TCCACCGAAG ATTAGTGATC AAGCAAGCAA ATTCCCCAAA 27589 .......... .......... .......... .......... .......... .......... 491 GCTTTGTATT TTCCTCTTCT CGTTCGATCC TCTCTCTCTC TTTGTTCTTT CTATTTTCTT 27529 .......... .......... .......... .......... .......... .......... 491 TATTCAAACC CTCTTTCTTT TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGCAAT 27469 .......... .......... .......... .......... .......... .......... 491 AATAACCCAC TAATTTACTC AAGGTTACCT CTTTTAACCC CCAAGTAATT AGACTTATTA 27409 .......... .......... .......... .......... .......... .......... 491 ACATTAACCC ACTAACTTTA TAATTAAAAC AGGAATAGTC AAAAACTTCC TTTAAAACAT 27349 .......... .......... .......... .......... .......... .......... 491 TAAAGAAATC CGACTCAGCC TGGGATTACG CAGCCTGTGA CGGCCTGTCA TGCCTGCGAC 27289 .......... .......... .......... .......... .......... .......... 491 GGTCCGTCCT GCTGCTCCGT CACAGAGTTC AGAGACTCAA TTCCCTTAAA GAGTCTGTGA 27229 .......... .......... .......... .......... .......... .......... 491 CGGTCCGTCA CGCCTGTGAC GGTCCGTCCT GCCATTCCGT TACGAAGTTT AGAGAGTCGA 27169 .......... .......... .......... .......... .......... .......... 491 TTTCAGTACC CATTTTTCAG AATTTCAAAG TGTTTTGAAA CGAGACCCCC TCGACGGTCC 27109 .......... .......... .......... .......... .......... .......... 491 GTCGTGCCCA TGACGGTCCG TCGTGGAATC CGTCGTCTCA GCCAGTTTTC CAGAAATAAC 27049 .......... .......... .......... .......... .......... .......... 491 ATCTCTTGCT CAAAACGACT AAACAGGTCG TTACAATAAA TATTAGGTAT AATAGATAAA 26989 .......... .......... .......... .......... .......... .......... 491 TTTATCATTT TACCTGATCT TATTTCACAT GTATGTCATC TATTTTTAGG TGTGTATAAA 26929 .......... .......... .......... .......... .......... .......... 491 TAGATATTTA AATTAAATTT GTATAAAGTT GAAGTAGACA CTGAATTCTA CGAGACATAA 26869 .......... .......... .......... .......... .......... .......... 491 TACAAGTAAG AGATCTAGGA CGCAAATTGT CATGTAAGAT GACACGCAAA AATGTGTGTA 26809 .......... .......... .......... .......... .......... .......... 491 TTTATTTATT CAACGAATTT ATAGAAATAT AAGTATCTAC TCGTGCACAC TCAAAAATAA 26749 .......... .......... .......... .......... .......... .......... 491 AGAATATAAA TATAAGTGAT AAGAGCATAT TTATATATTA TGTCTAACTA TTAATTTGAT 26689 .......... .......... .......... .......... .......... .......... 491 GTCCGTTGAT CACATAAAAA TTGAACCAAA TGAATCATTT CCTACTTATT CTTAATATAC 26629 .......... .......... .......... .......... .......... .......... 491 TTAAATTAGT TATCTTCCAT TATAACATAT ACAATTCATT CATTATTCGT AACTATCCTT 26569 .......... .......... .......... .......... .......... .......... 491 TGTAAATATA GGTGCATCGT ATGTTTAATA TATGGATGAA ATATTAATGA AGATGTATAA 26509 .......... .......... .......... .......... .......... .......... 491 ATTTTATACG AGAGTTATAC CATTAAAATT AAAATTTATA ATGCTTGGTA TAAAATTATA 26449 .......... .......... .......... .......... .......... .......... 491 CCAAGAAAAA TGTTTTGCAT GAATATCATC TTAAACAAAA CAACACACAA ATATGCAATT 26389 .......... .......... .......... .......... .......... .......... 491 CGAATGTGCA TAGAACCAAA TATCCCATAA ATTTAAGGTC AATGAGCTAG AGTTCACCCA 26329 .......... .......... .......... .......... .......... .......... 491 GGCAAGCAGC CTTATTTCCC CCCCCAAATT TAGGCCTTAT TTTTTTTCTT TAAGATTAAC 26269 .......... .......... .......... .......... .......... .......... 491 ATGTCTGAAT TTGAATAAAC ATTTGAATAA TTTTGTGTCT AAGTTTAAAC ATTAAATGAT 26209 .......... .......... .......... .......... .......... .......... 491 TAATATTATT TATTTTTTAT CATCTGAATA TGAGTAATTA TTTATAATTA AACATTATAA 26149 .......... .......... .......... .......... .......... .......... 491 ATATATAATT TAAAATAAGA AAGTAATTAA CCATCGTTTT TTTTTTTCTC AAAGCATATT 26089 .......... .......... .......... .......... .......... .......... 491 TAAAAAGAGG AGGTTGTTCG ATTTTGTAAC TACACAATTA AGAATAAAAC GGTACTTGCC 26029 .......... .......... .......... .......... .......... .......... 491 GATGATAAAA TATCTACTTT GAATGCTCTT CTTTCAAAAA TTAGTGTGTA TAATGAATTT 25969 .......... .......... .......... .......... .......... .......... 491 TTTTTAAAAA AAAGATATAT TTACATTAGA TATGATGCAG TTAAACAGTT ATTGAAACAT 25909 .......... .......... .......... .......... .......... .......... 491 GAGGTTATTT TCTTAGAATG TGTAAGGTCC TAAAAGTTAT TTGTAATCTT TTAACTAAGG 25849 .......... .......... .......... .......... .......... .......... 491 AATTTGACTT GAAAATGAAT AAATGGTCTT TACCTCGAAG GAGATGAAAC GGGATGGTGC 25789 .......... .......... .......... .......... .......... .......... 491 TAAAGCCCAT TGATTGAGAT AATATGACAC AAGGCCATAT TTTTTGATGC AGATAGTAGG 25729 .......... .......... .......... .......... .......... .......... 491 GGCGATTCAA CTCTAAAGCC ACTAAAGTAA TGACTTTAGG CTTCCAAAAT ATAACGCCTC 25669 .......... .......... .......... .......... .......... .......... 491 AAATTTATTT AATGTTACAG ATATACAAAT ATAAATATAC TTATAATTAT GTATCTATAA 25609 .......... .......... .......... .......... .......... .......... 491 TTAGTATTAA TTGAAATTTT CTTAATAGTT TCTAATCATG GGCGAATCCA CATGTAAAGG 25549 | || | | | ||| | ||||| .......... .......... ........GA TATACAAAAG GCAGAAGTAG GAGATAAAG. 522 TGGGGTGTAC GTCCACTCGT TAACTTCGAA AAATCATGTA TAAATATATA TATATTGAGA 25489 .......... .......... .......... .......... .......... .......... 522 AACTGATAAG GAAAAAAAAT ATAATAAAAA ATGCAACCTT AATGAACATT GAACTGGTCT 25429 .......... .......... .......... .......... .......... .......... 522 TGATTTGCTG ATAGAAATAA GAAAATACCT CCTTGCAGAC CTAGATTTCA ATCCTGATCA 25369 .......... .......... .......... .......... .......... .......... 522 ATAAGTCACT ATCCTATTCA AATCTTGGCT TCGCCTATAT TTTGTGTTAA ATTTGAACAC 25309 .......... .......... .......... .......... .......... .......... 522 TAAGAGCCTG TTTGGCTCAG CTTAAAAGCT GGTCAAACTG ACTTAAAAGC TGGTTTTTGA 25249 | | || ||||| |||| |||||||||| ||||||||| |||||||||| | ||||||| ....AACTTG TTTGGTTCAG CTTAAAAGCT GGTCAAACTA ACTTAAAAGC TAATTTTTGA 578 CTTATTTAGT TGTTTGGCAA TACTCAAAAT AACTTACTTT AAG--TTAAA AAAAACTTAT 25191 |||||||||| |||||||||| | |||||||| |||||| ||| ||| ||||| |||||||||| CTTATTTAGT TGTTTGGCAA TCCTCAAAAT AACTTATTTT AAGTTTTAAA AAAAACTTAT 638 TTTAAGCCAA AAGTTAAAAA CTGGGGTAGG GGTGTTTTTT TTTTTTAGCT TATAAGCTGT 25131 |||||||||| ||||||||| |||||||| | ||| || || ||||| | || ||||| || | TTTAAGCCAA AAGTTAAAAG CTGGGGTAAG AGTGCTTCTT TTTTTCAACT TATAAACTAT 698 TTTAAGTTGA CCACATTTTT ATCTTTTT 25103 |||||||||| |||||||||| | |||||| TTTAAGTTGA CCACATTTTT ACCTTTTT 726 hqPGS_C04HBa0077O05.1-_SGN-E544203- (25304 25103) ******************************************************************************** EST sequence 98 -strand 662 n (File: SGN-E376754-) 1 ACCCTACTAA AGCTGAGCTC CAGGACATGA TAAACGAGGT GGATGCAGAT GGTAATGGAA 61 CCATCGACTT CCCAGAGTTT CTAAACCTTA TGGCCAGGAA GATGAAGGAT ACTGACTCTG 121 AGGAGGAGTT GAAAGAGGCA TTCAGAGTTT TCGACAAGGA TCAAAATGGC TTCATCTCCG 181 CTGCTGAGCT TCGTCATGTG ATGACTAACC TTGGAGAGAA GCTTACTGAT GAAGAAGTCG 241 ATGAGATGAT TAGGGAAGCT GATGTTGATG GTGATGGACA AATCAACTAT GAGGAGTTTG 301 TTAAGGTCAT GATGGCCAAG TAATTCCATT ATCCTCTTGT TACATTTGAA GTTTAGACTT 361 GTCAAAAATG TGAAAAAATC CAAAAATAAT TCATTGGGTA GGCTCTTGTC TAGTATAATG 421 TTAGTCTTAC CATCTCGATG TATTGAACCT TCATTGAATG TAATGTTTTA TTGTATGAGT 481 GGTGTGATCT CTACTTATTT TCTTTAAGTT TGTGTACTTT CTTTGATCCT CTTAGAGCCT 541 GTTTGGCTCA GCTTAAAAAC TGGTCAAACT GACTTAAAAA GCTGGTTTTT GACTTATTTA 601 GCTGTTTGAC AATACTCAAA ATAACTTATT TTAAGTTAAA AAAAACTTAT TTTAAAAAAA 661 AA Predicted gene structure (within gDNA segment 31246 to 24516): Exon 1 29388 29380 ( 9 n); cDNA 473 481 ( 9 n); score: 0.667 Intron 1 29379 26940 (2440 n); Pd: 0.449 (s: 0), Pa: 0.550 (s: 0) Exon 2 26939 26907 ( 33 n); cDNA 482 513 ( 32 n); score: 0.697 Intron 2 26906 25906 (1001 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 25905 25883 ( 23 n); cDNA 514 535 ( 22 n); score: 0.652 Intron 3 25882 25305 ( 578 n); Pd: 0.000 (s: 0), Pa: 0.252 (s: 0.93) Exon 4 25304 25179 ( 126 n); cDNA 536 662 ( 127 n); score: 0.925 MATCH C04HBa0077O05.1- SGN-E376754- 0.925 191 0.289 C PGS_C04HBa0077O05.1-_SGN-E376754- (29388 29380,26939 26907,25905 25883,25304 25179) Alignment (genomic DNA sequence = upper lines): GTTGGGGTGG CAATTCCTCA TTCTGTACTT GCTCATTTTC CCTTTCCTCA CCCTCTCTTA 29329 || | ||| GTATGAGTG. .......... .......... .......... .......... .......... 481 CCACTTCCTC AGTTGGTGGA GGAGTCACCG CCCTAGTACC AGATGGGCTA GGTGCTCGTC 29269 .......... .......... .......... .......... .......... .......... 481 CTCTTCTCCT AGAGGACGTC CTCCCACGAT CTCTTCCGCG GCCTCTTGCC ACTGCTCCTC 29209 .......... .......... .......... .......... .......... .......... 481 TTCGAGCTAC AGTCTCAGTG GCTGGCTCAG ATGCATCTTG TCTTGCTGAT GTTGATGTTG 29149 .......... .......... .......... .......... .......... .......... 481 GCGCGGTCGT TGCTCTAGTT CTAACCATCT GCGAAATAGA GTGAAGATGG TCAGATACCA 29089 .......... .......... .......... .......... .......... .......... 481 ATTTGTATCA CCTAGATACC AATTGGATCC AAGTAATAAC ACAAAAGAAA GAAAGAAAGA 29029 .......... .......... .......... .......... .......... .......... 481 ATGGAATTTT CCTAAAGTCT TATAGCCTCT CAAAGAAAAG TAAAGGCGTC CCCCTACCGT 28969 .......... .......... .......... .......... .......... .......... 481 TCCTTAAGAC TCTACTAGAC TCGTTCTTGT GTGATGAGAC CAACGAACCT AATGCTCTGA 28909 .......... .......... .......... .......... .......... .......... 481 TACCAAGTTT GTCACGACCC AAATCGGGTC GCGACTGGCA CCCACACTTA CCCTCCTATG 28849 .......... .......... .......... .......... .......... .......... 481 TGAGCGAACC AACCAATCTA AACCTTAACA TTTCAATATA ATATCAACAG AAAGTAATGC 28789 .......... .......... .......... .......... .......... .......... 481 GGAAGACTTA AACTCATTAA TAAAAACCAA TTCAATAACT TCTAAAAACT CAACAACTAT 28729 .......... .......... .......... .......... .......... .......... 481 TATTATCCCC AAAATCTGGA AGTCATTATC ACAAGAACAT CTACTTCAAA TTACTAAATC 28669 .......... .......... .......... .......... .......... .......... 481 TAAGAGTATC TAAGAAGTTA AAATACATAA ACAGCTAGTC CATGCCGGAA CTTCAAGGCA 28609 .......... .......... .......... .......... .......... .......... 481 TCAAGACATA AAGAAGAAGA TCCAGTCCAA GCTAGAAGCT TTAGCTCACC CTGAAATCTA 28549 .......... .......... .......... .......... .......... .......... 481 GTGTGATGAA GACTGGCTAG AGTTGCGGTT GGATTGAAGA CGACGATACG TTTGCTGCAC 28489 .......... .......... .......... .......... .......... .......... 481 TCCACAATGA ACAAAAAGAA AACATACAAG TAGGGGTCAG TAGAAAACAC GAGTACTGAG 28429 .......... .......... .......... .......... .......... .......... 481 TAGATATCAT CGGCCAACTC AAAATAGAAA ACAGTATATA TCAGATAATA TCATAAAATC 28369 .......... .......... .......... .......... .......... .......... 481 AACTACAGTA CTTAACATGC AACATTTACA ATTACCATAA CCCTTGGTCA TAACACCAAA 28309 .......... .......... .......... .......... .......... .......... 481 CTCATCAATG AGGACTCACA CCTCCCCATC ATACTCATTT GGGAATTAGG TTCATTAAAT 28249 .......... .......... .......... .......... .......... .......... 481 TAAGTATATT AACATATTTC AAGATTCATT CTCTTTACTA ATCCTGGTGC CGGAACGTGA 28189 .......... .......... .......... .......... .......... .......... 481 CACTCCGATC CTCATATACT ATCCTGGTAC CAGAATGTGG CACCCGATCC ATATACTATC 28129 .......... .......... .......... .......... .......... .......... 481 CTGGTGTCGG AACGTGACAC TCCGATCCTC ATAAACTATC CTGGTACCGG AACGTGGCAC 28069 .......... .......... .......... .......... .......... .......... 481 CCGATCCATA TACTATCCTG GTGTCGGAAC GTGACACCCG ATCCATATAC TATCCTGGTG 28009 .......... .......... .......... .......... .......... .......... 481 TCGGAACTTG ACACTCCGAT CCTCACATAC TATCCTGGTA CCGGAACGTG GCACCCGATC 27949 .......... .......... .......... .......... .......... .......... 481 CATATACTAT TCTGGTGTCG GAACGTGACA CTCCGATCCT CATATACTAT CCTGGTACCG 27889 .......... .......... .......... .......... .......... .......... 481 GAACGTGGCA CCCGATCCCC TAATCTCACT ACTTTCGTTC ATCAAGCCTT CTTTTATACC 27829 .......... .......... .......... .......... .......... .......... 481 AAGGCATCAT CATTAACAAA GTAGATTAGG GCTTTTCAAG ATTTAAGATT CAAGAGCTTC 27769 .......... .......... .......... .......... .......... .......... 481 ATCATGCTTA TTCATCACAA TTATATAATC ACATCATGTA AGGATACAAT TAATCACATA 27709 .......... .......... .......... .......... .......... .......... 481 GAAGGGTTTA CAACACTACC CAATACATAT CATTCGCTAT TAAGAGTTTA CTACGAATAG 27649 .......... .......... .......... .......... .......... .......... 481 TATAAAAACC ATAACCTACC TCCACCGAAG ATTAGTGATC AAGCAAGCAA ATTCCCCAAA 27589 .......... .......... .......... .......... .......... .......... 481 GCTTTGTATT TTCCTCTTCT CGTTCGATCC TCTCTCTCTC TTTGTTCTTT CTATTTTCTT 27529 .......... .......... .......... .......... .......... .......... 481 TATTCAAACC CTCTTTCTTT TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGCAAT 27469 .......... .......... .......... .......... .......... .......... 481 AATAACCCAC TAATTTACTC AAGGTTACCT CTTTTAACCC CCAAGTAATT AGACTTATTA 27409 .......... .......... .......... .......... .......... .......... 481 ACATTAACCC ACTAACTTTA TAATTAAAAC AGGAATAGTC AAAAACTTCC TTTAAAACAT 27349 .......... .......... .......... .......... .......... .......... 481 TAAAGAAATC CGACTCAGCC TGGGATTACG CAGCCTGTGA CGGCCTGTCA TGCCTGCGAC 27289 .......... .......... .......... .......... .......... .......... 481 GGTCCGTCCT GCTGCTCCGT CACAGAGTTC AGAGACTCAA TTCCCTTAAA GAGTCTGTGA 27229 .......... .......... .......... .......... .......... .......... 481 CGGTCCGTCA CGCCTGTGAC GGTCCGTCCT GCCATTCCGT TACGAAGTTT AGAGAGTCGA 27169 .......... .......... .......... .......... .......... .......... 481 TTTCAGTACC CATTTTTCAG AATTTCAAAG TGTTTTGAAA CGAGACCCCC TCGACGGTCC 27109 .......... .......... .......... .......... .......... .......... 481 GTCGTGCCCA TGACGGTCCG TCGTGGAATC CGTCGTCTCA GCCAGTTTTC CAGAAATAAC 27049 .......... .......... .......... .......... .......... .......... 481 ATCTCTTGCT CAAAACGACT AAACAGGTCG TTACAATAAA TATTAGGTAT AATAGATAAA 26989 .......... .......... .......... .......... .......... .......... 481 TTTATCATTT TACCTGATCT TATTTCACAT GTATGTCATC TATTTTTAGG TGTGTATAAA 26929 | |||| || .......... .......... .......... .......... .........G TGTG-ATCTC 491 TAGATATTTA AATTAAATTT GTATAAAGTT GAAGTAGACA CTGAATTCTA CGAGACATAA 26869 || ||||| |||| ||| || TACTTATTTT CTTTAAGTTT GT........ .......... .......... .......... 513 TACAAGTAAG AGATCTAGGA CGCAAATTGT CATGTAAGAT GACACGCAAA AATGTGTGTA 26809 .......... .......... .......... .......... .......... .......... 513 TTTATTTATT CAACGAATTT ATAGAAATAT AAGTATCTAC TCGTGCACAC TCAAAAATAA 26749 .......... .......... .......... .......... .......... .......... 513 AGAATATAAA TATAAGTGAT AAGAGCATAT TTATATATTA TGTCTAACTA TTAATTTGAT 26689 .......... .......... .......... .......... .......... .......... 513 GTCCGTTGAT CACATAAAAA TTGAACCAAA TGAATCATTT CCTACTTATT CTTAATATAC 26629 .......... .......... .......... .......... .......... .......... 513 TTAAATTAGT TATCTTCCAT TATAACATAT ACAATTCATT CATTATTCGT AACTATCCTT 26569 .......... .......... .......... .......... .......... .......... 513 TGTAAATATA GGTGCATCGT ATGTTTAATA TATGGATGAA ATATTAATGA AGATGTATAA 26509 .......... .......... .......... .......... .......... .......... 513 ATTTTATACG AGAGTTATAC CATTAAAATT AAAATTTATA ATGCTTGGTA TAAAATTATA 26449 .......... .......... .......... .......... .......... .......... 513 CCAAGAAAAA TGTTTTGCAT GAATATCATC TTAAACAAAA CAACACACAA ATATGCAATT 26389 .......... .......... .......... .......... .......... .......... 513 CGAATGTGCA TAGAACCAAA TATCCCATAA ATTTAAGGTC AATGAGCTAG AGTTCACCCA 26329 .......... .......... .......... .......... .......... .......... 513 GGCAAGCAGC CTTATTTCCC CCCCCAAATT TAGGCCTTAT TTTTTTTCTT TAAGATTAAC 26269 .......... .......... .......... .......... .......... .......... 513 ATGTCTGAAT TTGAATAAAC ATTTGAATAA TTTTGTGTCT AAGTTTAAAC ATTAAATGAT 26209 .......... .......... .......... .......... .......... .......... 513 TAATATTATT TATTTTTTAT CATCTGAATA TGAGTAATTA TTTATAATTA AACATTATAA 26149 .......... .......... .......... .......... .......... .......... 513 ATATATAATT TAAAATAAGA AAGTAATTAA CCATCGTTTT TTTTTTTCTC AAAGCATATT 26089 .......... .......... .......... .......... .......... .......... 513 TAAAAAGAGG AGGTTGTTCG ATTTTGTAAC TACACAATTA AGAATAAAAC GGTACTTGCC 26029 .......... .......... .......... .......... .......... .......... 513 GATGATAAAA TATCTACTTT GAATGCTCTT CTTTCAAAAA TTAGTGTGTA TAATGAATTT 25969 .......... .......... .......... .......... .......... .......... 513 TTTTTAAAAA AAAGATATAT TTACATTAGA TATGATGCAG TTAAACAGTT ATTGAAACAT 25909 .......... .......... .......... .......... .......... .......... 513 GAGGTTATTT TCTTAGAATG TGTAAGGTCC TAAAAGTTAT TTGTAATCTT TTAACTAAGG 25849 | || || |||| || | | || ...G-TACTT TCTTTGATCC TCTTAG.... .......... .......... .......... 535 AATTTGACTT GAAAATGAAT AAATGGTCTT TACCTCGAAG GAGATGAAAC GGGATGGTGC 25789 .......... .......... .......... .......... .......... .......... 535 TAAAGCCCAT TGATTGAGAT AATATGACAC AAGGCCATAT TTTTTGATGC AGATAGTAGG 25729 .......... .......... .......... .......... .......... .......... 535 GGCGATTCAA CTCTAAAGCC ACTAAAGTAA TGACTTTAGG CTTCCAAAAT ATAACGCCTC 25669 .......... .......... .......... .......... .......... .......... 535 AAATTTATTT AATGTTACAG ATATACAAAT ATAAATATAC TTATAATTAT GTATCTATAA 25609 .......... .......... .......... .......... .......... .......... 535 TTAGTATTAA TTGAAATTTT CTTAATAGTT TCTAATCATG GGCGAATCCA CATGTAAAGG 25549 .......... .......... .......... .......... .......... .......... 535 TGGGGTGTAC GTCCACTCGT TAACTTCGAA AAATCATGTA TAAATATATA TATATTGAGA 25489 .......... .......... .......... .......... .......... .......... 535 AACTGATAAG GAAAAAAAAT ATAATAAAAA ATGCAACCTT AATGAACATT GAACTGGTCT 25429 .......... .......... .......... .......... .......... .......... 535 TGATTTGCTG ATAGAAATAA GAAAATACCT CCTTGCAGAC CTAGATTTCA ATCCTGATCA 25369 .......... .......... .......... .......... .......... .......... 535 ATAAGTCACT ATCCTATTCA AATCTTGGCT TCGCCTATAT TTTGTGTTAA ATTTGAACAC 25309 .......... .......... .......... .......... .......... .......... 535 TAAGAGCCTG TTTGGCTCAG CTTAAAAGCT GGTCAAACTG ACTTAAAA-G CTGGTTTTTG 25250 |||||| |||||||||| ||||||| || |||||||||| |||||||| | |||||||||| ....AGCCTG TTTGGCTCAG CTTAAAAACT GGTCAAACTG ACTTAAAAAG CTGGTTTTTG 591 ACTTATTTAG TTGTTTGGCA ATACTCAAAA TAACTTACTT TAAGTTAAAA AAAACTTATT 25190 |||||||||| |||||| || |||||||||| ||||||| || |||||||||| |||||||||| ACTTATTTAG CTGTTTGACA ATACTCAAAA TAACTTATTT TAAGTTAAAA AAAACTTATT 651 TTAAGCCAAA A 25179 |||| ||| | TTAAAAAAAA A 662 hqPGS_C04HBa0077O05.1-_SGN-E376754- (25304 25179) ******************************************************************************** EST sequence 154 +strand 387 n (File: SGN-E577960+) 1 CAAAAGTGTA AAACAAGCTC GAAACCTCTC AAAAATCATC CCCCAAATTC AACAAAACAC 61 TCGGAAATTC TGAGCCGAGC ATCCAAACCC CGAATGTTCA CCAAAGTCAA CCCAAAAGCC 121 CACAATTTCA CAACTTAGGA CCTCAAATCC TCAAAAAGAC TCAGAATACG AAACGAACAA 181 CTCTCACAAC TCAGATTCCA CATTCCGGTA CTGATGGTAT TGATGGAACT TTATTCCGAC 241 ACTCGAAGCT CCCAAAGGCT CCAAAAACCA CTTTTGAGCA ACTTAGAGCC TGTTTGGCTC 301 AGCTTAAAAG CTGGTCAAAC TGACTTAAAA GCTGGTTTTT GACTTATTTA ACTGTTTGGC 361 AATACTCAAA ACAGCTTATT TTAAGTT Predicted gene structure (within gDNA segment 28746 to 24450): Exon 1 25304 25204 ( 101 n); cDNA 287 387 ( 101 n); score: 0.950 MATCH C04HBa0077O05.1- SGN-E577960+ 0.950 101 0.261 C PGS_C04HBa0077O05.1-_SGN-E577960+ (25304 25204) Alignment (genomic DNA sequence = upper lines): AGCCTGTTTG GCTCAGCTTA AAAGCTGGTC AAACTGACTT AAAAGCTGGT TTTTGACTTA 25245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCTGTTTG GCTCAGCTTA AAAGCTGGTC AAACTGACTT AAAAGCTGGT TTTTGACTTA 346 TTTAGTTGTT TGGCAATACT CAAAATAACT TACTTTAAGT T 25204 |||| |||| |||||||||| ||||| | || || ||||||| | TTTAACTGTT TGGCAATACT CAAAACAGCT TATTTTAAGT T 387 hqPGS_C04HBa0077O05.1-_SGN-E577960+ (25304 25204) ******************************************************************************** EST sequence 37 -strand 385 n (File: SGN-E217478-) 1 TGTCCAACAA GATTCACTGA AAAATGGTGC ACGAGTTAGG AATGTCGTCC CTGGTACAGA 61 GGAAGAAGCA CGTCGTGTGA TTGAACGGAT GGATGCTGAA AATTCATGAA GTCTTCTTGA 121 CTAGCATCAA TTGGCAGATA AAGGACTGAG GATACCTGAT TTTGGGTTTC AAACTCCCAG 181 AAAAGCAAAG ATGTCACAGT TATTTTAAGC AGAGATACTT AGAGCCTGTT TGGCTCAGCT 241 TAAAAGCTGG TTTTTGACTT ATTTAACTGT TTGGCAATAC TCAAAATAGT TTTTTTTAAC 301 TTATTTAACT GTTTGACAAT ACTCAAAATG GTTTATTTTA AGTTAAAAAA AACTTATTTT 361 AAGCCCCAAC AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 28116 to 23648): Exon 1 25288 25207 ( 82 n); cDNA 218 299 ( 82 n); score: 0.787 PPA cDNA 368 385 MATCH C04HBa0077O05.1- SGN-E217478- 0.787 82 0.213 C PGS_C04HBa0077O05.1-_SGN-E217478- (25288 25207) Alignment (genomic DNA sequence = upper lines): CTTAAAAGCT GGTCAAACTG A-CTTAAAAG CTGGTTTTTG ACTTATTTAG TTGTTTGGCA 25230 |||| | || | | || | |||||||| |||||||||| ||||||||| ||||||||| CTTAGAGCCT GTT-TGGCTC AGCTTAAAAG CTGGTTTTTG ACTTATTTAA CTGTTTGGCA 276 ATACTCAAAA TAACTTACTT TAA 25207 |||||||||| || || || ||| ATACTCAAAA TAGTTTTTTT TAA 299 hqPGS_C04HBa0077O05.1-_SGN-E217478- (25288 25207) ******************************************************************************** EST sequence 79 -strand 468 n (File: SGN-E228654-) 1 ATCAATGTAG AAGTGGTAGC TCATGTCATG AGACCTGAGT TGCGGTCTAG CGAGGTTTCA 61 AACAATTTCT ATTTCACTTT CACTGTCCAA CAAGATTCAC TGAAAAATGG TGCACGAGTT 121 AGGAATGTCG TCCCTGGTAC AGAGGAAGAA GCACGTCGTG TGATTGAACG GATGGATGCT 181 GAAAATTCAT GAAGTCTTCT TGACTAGCAT CAATTGGCAG ATAAAGGACT GAGGATACCT 241 GATTTTGGGT TTCAAACTCC CAGAAAAGCA AAGATGTCCC AGTTATTTTA AGCAGAGATA 301 CTTAGAGCCT GTTTGGCTCA GCTTAAAAGC TGGTTTTTGA CTTATTTAAC TGTTTGGCAA 361 TACTCAAAAT AGTTTTTTTT AACTTATTTA ACTGTTTGAC AATACTCAAA ATGGTTTATT 421 TTAAGTTAAA AAAAACTTAT TTTAAGCCCA AAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 28946 to 23648): Exon 1 25288 25207 ( 82 n); cDNA 301 382 ( 82 n); score: 0.787 PPA cDNA 450 468 MATCH C04HBa0077O05.1- SGN-E228654- 0.787 82 0.175 C PGS_C04HBa0077O05.1-_SGN-E228654- (25288 25207) Alignment (genomic DNA sequence = upper lines): CTTAAAAGCT GGTCAAACTG A-CTTAAAAG CTGGTTTTTG ACTTATTTAG TTGTTTGGCA 25230 |||| | || | | || | |||||||| |||||||||| ||||||||| ||||||||| CTTAGAGCCT GTT-TGGCTC AGCTTAAAAG CTGGTTTTTG ACTTATTTAA CTGTTTGGCA 359 ATACTCAAAA TAACTTACTT TAA 25207 |||||||||| || || || ||| ATACTCAAAA TAGTTTTTTT TAA 382 hqPGS_C04HBa0077O05.1-_SGN-E228654- (25288 25207) ******************************************************************************** EST sequence 80 -strand 397 n (File: SGN-E229134-) 1 TTCACTTTCA CTGTCCAACA AGATTCACTG AAAAAATGGT GCACGAGTTA GGAATGTCGT 61 CCCTGGTACA GAGGAAGAAG CACGTCGTGT GATTGAACGG ATGGATGCTG AAAATTCATG 121 AAGTCTTCTT GACTAGCATC AATTGGCAGA TAAAGGACTG AGGATACCTG ATTTTGGGTT 181 TCAAACTCCC AGAAAAGCAA AGATGTCACA GTTATTTTAA GCAGAGATAC TTAGAGCCTG 241 TTTGGCTCAG CTTAAAAGCT GGTTTTTGAC TTATTTAACT GTTTGGCAAT ACTCAAAATA 301 GTTTTTTTTA ACTTATTTAA CTGTTTGACA ATACTCAAAA TGGTTTATTT TAAGTTAAAA 361 AAAACTTATT TTAAGCCAAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 28236 to 24419): Exon 1 25288 25207 ( 82 n); cDNA 230 311 ( 82 n); score: 0.787 PPA cDNA 378 397 MATCH C04HBa0077O05.1- SGN-E229134- 0.787 82 0.207 C PGS_C04HBa0077O05.1-_SGN-E229134- (25288 25207) Alignment (genomic DNA sequence = upper lines): CTTAAAAGCT GGTCAAACTG A-CTTAAAAG CTGGTTTTTG ACTTATTTAG TTGTTTGGCA 25230 |||| | || | | || | |||||||| |||||||||| ||||||||| ||||||||| CTTAGAGCCT GTT-TGGCTC AGCTTAAAAG CTGGTTTTTG ACTTATTTAA CTGTTTGGCA 288 ATACTCAAAA TAACTTACTT TAA 25207 |||||||||| || || || ||| ATACTCAAAA TAGTTTTTTT TAA 311 hqPGS_C04HBa0077O05.1-_SGN-E229134- (25288 25207) ******************************************************************************** EST sequence 280 +strand 430 n (File: SGN-E240526+) 1 ACAAGTCAAC TTTGTTTGAT TAGTAGGATT ATTTCGTTAC TTTGTATCGA GTAAATCTTA 61 ATTCATTGTA CTATACTGAA CTTGTAAAAC TATTGAACTG GTATTTTATC CTCCGTCTTG 121 GGCGTGGTGA AGCAAATGAT CAGTGAGATT GACCACCATC AGTATAGTCA GAGTGTGTAA 181 TTGTGGACAA GGCCATTGAC CCATGATGAC AGCCCACAAA ATAATGCAAT ATCAGACTAA 241 ATTGTTAGGA GTTGGCCCAG TTCTGGAGAA ACACATGCAG GATGATAGCA ATGGGACCAA 301 GAGGTAAAAA ACTTCTAGTT GGCTACAAAA ACAGAATTAA GAGCTTGTTT GGCTCAGCTT 361 AAAAGCTGGT CAAACTGACT TAAAAGCTGG TTTTTAACTT ATTTAACTGT TTGACAATAC 421 TTAAAATAGC Predicted gene structure (within gDNA segment 29950 to 24291): Exon 1 29073 29057 ( 17 n); cDNA 285 300 ( 16 n); score: 0.824 Intron 1 29056 25809 (3248 n); Pd: 0.649 (s: 0), Pa: 0.642 (s: 0) Exon 2 25808 25798 ( 11 n); cDNA 301 311 ( 11 n); score: 0.636 Intron 2 25797 25581 ( 217 n); Pd: 0.000 (s: 0), Pa: 0.905 (s: 0) Exon 3 25580 25550 ( 31 n); cDNA 312 341 ( 30 n); score: 0.516 Intron 3 25549 25305 ( 245 n); Pd: 0.292 (s: 0), Pa: 0.252 (s: 0.98) Exon 4 25304 25218 ( 87 n); cDNA 342 428 ( 87 n); score: 0.931 MATCH C04HBa0077O05.1- SGN-E240526+ 0.931 146 0.340 C PGS_C04HBa0077O05.1-_SGN-E240526+ (29073 29057,25808 25798,25580 25550,25304 25218) Alignment (genomic DNA sequence = upper lines): ATACCAATTG GATCCAAGTA ATAACACAAA AGAAAGAAAG AAAGAATGGA ATTTTCCTAA 29014 ||| |||| | || |||| ATAGCAATGG GA-CCAA... .......... .......... .......... .......... 300 AGTCTTATAG CCTCTCAAAG AAAAGTAAAG GCGTCCCCCT ACCGTTCCTT AAGACTCTAC 28954 .......... .......... .......... .......... .......... .......... 300 TAGACTCGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA AGTTTGTCAC 28894 .......... .......... .......... .......... .......... .......... 300 GACCCAAATC GGGTCGCGAC TGGCACCCAC ACTTACCCTC CTATGTGAGC GAACCAACCA 28834 .......... .......... .......... .......... .......... .......... 300 ATCTAAACCT TAACATTTCA ATATAATATC AACAGAAAGT AATGCGGAAG ACTTAAACTC 28774 .......... .......... .......... .......... .......... .......... 300 ATTAATAAAA ACCAATTCAA TAACTTCTAA AAACTCAACA ACTATTATTA TCCCCAAAAT 28714 .......... .......... .......... .......... .......... .......... 300 CTGGAAGTCA TTATCACAAG AACATCTACT TCAAATTACT AAATCTAAGA GTATCTAAGA 28654 .......... .......... .......... .......... .......... .......... 300 AGTTAAAATA CATAAACAGC TAGTCCATGC CGGAACTTCA AGGCATCAAG ACATAAAGAA 28594 .......... .......... .......... .......... .......... .......... 300 GAAGATCCAG TCCAAGCTAG AAGCTTTAGC TCACCCTGAA ATCTAGTGTG ATGAAGACTG 28534 .......... .......... .......... .......... .......... .......... 300 GCTAGAGTTG CGGTTGGATT GAAGACGACG ATACGTTTGC TGCACTCCAC AATGAACAAA 28474 .......... .......... .......... .......... .......... .......... 300 AAGAAAACAT ACAAGTAGGG GTCAGTAGAA AACACGAGTA CTGAGTAGAT ATCATCGGCC 28414 .......... .......... .......... .......... .......... .......... 300 AACTCAAAAT AGAAAACAGT ATATATCAGA TAATATCATA AAATCAACTA CAGTACTTAA 28354 .......... .......... .......... .......... .......... .......... 300 CATGCAACAT TTACAATTAC CATAACCCTT GGTCATAACA CCAAACTCAT CAATGAGGAC 28294 .......... .......... .......... .......... .......... .......... 300 TCACACCTCC CCATCATACT CATTTGGGAA TTAGGTTCAT TAAATTAAGT ATATTAACAT 28234 .......... .......... .......... .......... .......... .......... 300 ATTTCAAGAT TCATTCTCTT TACTAATCCT GGTGCCGGAA CGTGACACTC CGATCCTCAT 28174 .......... .......... .......... .......... .......... .......... 300 ATACTATCCT GGTACCAGAA TGTGGCACCC GATCCATATA CTATCCTGGT GTCGGAACGT 28114 .......... .......... .......... .......... .......... .......... 300 GACACTCCGA TCCTCATAAA CTATCCTGGT ACCGGAACGT GGCACCCGAT CCATATACTA 28054 .......... .......... .......... .......... .......... .......... 300 TCCTGGTGTC GGAACGTGAC ACCCGATCCA TATACTATCC TGGTGTCGGA ACTTGACACT 27994 .......... .......... .......... .......... .......... .......... 300 CCGATCCTCA CATACTATCC TGGTACCGGA ACGTGGCACC CGATCCATAT ACTATTCTGG 27934 .......... .......... .......... .......... .......... .......... 300 TGTCGGAACG TGACACTCCG ATCCTCATAT ACTATCCTGG TACCGGAACG TGGCACCCGA 27874 .......... .......... .......... .......... .......... .......... 300 TCCCCTAATC TCACTACTTT CGTTCATCAA GCCTTCTTTT ATACCAAGGC ATCATCATTA 27814 .......... .......... .......... .......... .......... .......... 300 ACAAAGTAGA TTAGGGCTTT TCAAGATTTA AGATTCAAGA GCTTCATCAT GCTTATTCAT 27754 .......... .......... .......... .......... .......... .......... 300 CACAATTATA TAATCACATC ATGTAAGGAT ACAATTAATC ACATAGAAGG GTTTACAACA 27694 .......... .......... .......... .......... .......... .......... 300 CTACCCAATA CATATCATTC GCTATTAAGA GTTTACTACG AATAGTATAA AAACCATAAC 27634 .......... .......... .......... .......... .......... .......... 300 CTACCTCCAC CGAAGATTAG TGATCAAGCA AGCAAATTCC CCAAAGCTTT GTATTTTCCT 27574 .......... .......... .......... .......... .......... .......... 300 CTTCTCGTTC GATCCTCTCT CTCTCTTTGT TCTTTCTATT TTCTTTATTC AAACCCTCTT 27514 .......... .......... .......... .......... .......... .......... 300 TCTTTTACCC TAATTAGCAT ATAATTAAGA ATAAAAGATG GCAATAATAA CCCACTAATT 27454 .......... .......... .......... .......... .......... .......... 300 TACTCAAGGT TACCTCTTTT AACCCCCAAG TAATTAGACT TATTAACATT AACCCACTAA 27394 .......... .......... .......... .......... .......... .......... 300 CTTTATAATT AAAACAGGAA TAGTCAAAAA CTTCCTTTAA AACATTAAAG AAATCCGACT 27334 .......... .......... .......... .......... .......... .......... 300 CAGCCTGGGA TTACGCAGCC TGTGACGGCC TGTCATGCCT GCGACGGTCC GTCCTGCTGC 27274 .......... .......... .......... .......... .......... .......... 300 TCCGTCACAG AGTTCAGAGA CTCAATTCCC TTAAAGAGTC TGTGACGGTC CGTCACGCCT 27214 .......... .......... .......... .......... .......... .......... 300 GTGACGGTCC GTCCTGCCAT TCCGTTACGA AGTTTAGAGA GTCGATTTCA GTACCCATTT 27154 .......... .......... .......... .......... .......... .......... 300 TTCAGAATTT CAAAGTGTTT TGAAACGAGA CCCCCTCGAC GGTCCGTCGT GCCCATGACG 27094 .......... .......... .......... .......... .......... .......... 300 GTCCGTCGTG GAATCCGTCG TCTCAGCCAG TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 .......... .......... .......... .......... .......... .......... 300 CGACTAAACA GGTCGTTACA ATAAATATTA GGTATAATAG ATAAATTTAT CATTTTACCT 26974 .......... .......... .......... .......... .......... .......... 300 GATCTTATTT CACATGTATG TCATCTATTT TTAGGTGTGT ATAAATAGAT ATTTAAATTA 26914 .......... .......... .......... .......... .......... .......... 300 AATTTGTATA AAGTTGAAGT AGACACTGAA TTCTACGAGA CATAATACAA GTAAGAGATC 26854 .......... .......... .......... .......... .......... .......... 300 TAGGACGCAA ATTGTCATGT AAGATGACAC GCAAAAATGT GTGTATTTAT TTATTCAACG 26794 .......... .......... .......... .......... .......... .......... 300 AATTTATAGA AATATAAGTA TCTACTCGTG CACACTCAAA AATAAAGAAT ATAAATATAA 26734 .......... .......... .......... .......... .......... .......... 300 GTGATAAGAG CATATTTATA TATTATGTCT AACTATTAAT TTGATGTCCG TTGATCACAT 26674 .......... .......... .......... .......... .......... .......... 300 AAAAATTGAA CCAAATGAAT CATTTCCTAC TTATTCTTAA TATACTTAAA TTAGTTATCT 26614 .......... .......... .......... .......... .......... .......... 300 TCCATTATAA CATATACAAT TCATTCATTA TTCGTAACTA TCCTTTGTAA ATATAGGTGC 26554 .......... .......... .......... .......... .......... .......... 300 ATCGTATGTT TAATATATGG ATGAAATATT AATGAAGATG TATAAATTTT ATACGAGAGT 26494 .......... .......... .......... .......... .......... .......... 300 TATACCATTA AAATTAAAAT TTATAATGCT TGGTATAAAA TTATACCAAG AAAAATGTTT 26434 .......... .......... .......... .......... .......... .......... 300 TGCATGAATA TCATCTTAAA CAAAACAACA CACAAATATG CAATTCGAAT GTGCATAGAA 26374 .......... .......... .......... .......... .......... .......... 300 CCAAATATCC CATAAATTTA AGGTCAATGA GCTAGAGTTC ACCCAGGCAA GCAGCCTTAT 26314 .......... .......... .......... .......... .......... .......... 300 TTCCCCCCCC AAATTTAGGC CTTATTTTTT TTCTTTAAGA TTAACATGTC TGAATTTGAA 26254 .......... .......... .......... .......... .......... .......... 300 TAAACATTTG AATAATTTTG TGTCTAAGTT TAAACATTAA ATGATTAATA TTATTTATTT 26194 .......... .......... .......... .......... .......... .......... 300 TTTATCATCT GAATATGAGT AATTATTTAT AATTAAACAT TATAAATATA TAATTTAAAA 26134 .......... .......... .......... .......... .......... .......... 300 TAAGAAAGTA ATTAACCATC GTTTTTTTTT TTCTCAAAGC ATATTTAAAA AGAGGAGGTT 26074 .......... .......... .......... .......... .......... .......... 300 GTTCGATTTT GTAACTACAC AATTAAGAAT AAAACGGTAC TTGCCGATGA TAAAATATCT 26014 .......... .......... .......... .......... .......... .......... 300 ACTTTGAATG CTCTTCTTTC AAAAATTAGT GTGTATAATG AATTTTTTTT AAAAAAAAGA 25954 .......... .......... .......... .......... .......... .......... 300 TATATTTACA TTAGATATGA TGCAGTTAAA CAGTTATTGA AACATGAGGT TATTTTCTTA 25894 .......... .......... .......... .......... .......... .......... 300 GAATGTGTAA GGTCCTAAAA GTTATTTGTA ATCTTTTAAC TAAGGAATTT GACTTGAAAA 25834 .......... .......... .......... .......... .......... .......... 300 TGAATAAATG GTCTTTACCT CGAAGGAGAT GAAACGGGAT GGTGCTAAAG CCCATTGATT 25774 ||| | ||| .......... .......... .....GAGGT AAAAAA.... .......... .......... 311 GAGATAATAT GACACAAGGC CATATTTTTT GATGCAGATA GTAGGGGCGA TTCAACTCTA 25714 .......... .......... .......... .......... .......... .......... 311 AAGCCACTAA AGTAATGACT TTAGGCTTCC AAAATATAAC GCCTCAAATT TATTTAATGT 25654 .......... .......... .......... .......... .......... .......... 311 TACAGATATA CAAATATAAA TATACTTATA ATTATGTATC TATAATTAGT ATTAATTGAA 25594 .......... .......... .......... .......... .......... .......... 311 ATTTTCTTAA TAGTTTCTAA TCATGGGCGA ATCCACATGT AAAGGTGGGG TGTACGTCCA 25534 ||||| | | | | || | | ||| .......... ...CTTCTAG TTGGCTACAA AAACAGAATT -AAG...... .......... 341 CTCGTTAACT TCGAAAAATC ATGTATAAAT ATATATATAT TGAGAAACTG ATAAGGAAAA 25474 .......... .......... .......... .......... .......... .......... 341 AAAATATAAT AAAAAATGCA ACCTTAATGA ACATTGAACT GGTCTTGATT TGCTGATAGA 25414 .......... .......... .......... .......... .......... .......... 341 AATAAGAAAA TACCTCCTTG CAGACCTAGA TTTCAATCCT GATCAATAAG TCACTATCCT 25354 .......... .......... .......... .......... .......... .......... 341 ATTCAAATCT TGGCTTCGCC TATATTTTGT GTTAAATTTG AACACTAAGA GCCTGTTTGG 25294 | || ||||||| .......... .......... .......... .......... .........A GCTTGTTTGG 352 CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTGACTTAT TTAGTTGTTT 25234 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| ||| ||||| CTCAGCTTAA AAGCTGGTCA AACTGACTTA AAAGCTGGTT TTTAACTTAT TTAACTGTTT 412 GGCAATACTC AAAATA 25218 | ||||||| |||||| GACAATACTT AAAATA 428 hqPGS_C04HBa0077O05.1-_SGN-E240526+ (25304 25218) ******************************************************************************** EST sequence 156 +strand 737 n (File: SGN-E578078+) 1 GAACTCATAA TGCTCATACC TGGTCCGAAA AGCAGTCTTG GGCACATCTG CTGCTCGTAT 61 TTTCAATTGA TGATAACCAG ATCTCAAGTC GATTTTTGAG AAGGTACAAG CACCTTGTAA 121 CTGATCGAAC AAATCATCAA TGTGAGGAAG ATATTTTCGA AAATTCTCTC ACTATGGTGA 181 TTGACTCAAT TGGAGGAATA TCGGACTCAA GATCTTTGAC TCTTACAATA TGGTAAATTC 241 ACACTTTTGA GATTATTTTG CAATATTTTA AACAAGAGAT GATATGACCT TTAGGAATTA 301 AATTACTGCC ATTCCACTCT AAGACAGGTT CATTAGGAAA GTTGAATTTA ACAACTCTTG 361 TTCGACAGTC TATGGAAGCA TAACAAGCAT GCAACCAATC CATTCCCAAG ATAAAATAAA 421 AATCGACCAT ATCGAATTCC ACCAAATCCA CCCAAGTAAC TCTATTGGGG AAATATATAG 481 GATAACTCCT AAAGACTCTT CTAGCAACAA TGGAGTCACC TACCGGGGTT GTAACAAAAA 541 ATATTTTCTC AAAGGCCTGG CGTCGAATAT GAAGAGACAT ACTCACCCGT TATGGATGCA 601 ATAACATTGG TTTATCTCAT TAGTTTCACA GTCCATGAGC AACTTGAAAT GCATTTGATG 661 GATGTGGTTA CAACCTACCT TTATGGATCA TTTAAATATG AGATATACAT GAAAATTCCT 721 GAAGGATTTG CGATTGC Predicted gene structure (within gDNA segment 32266 to 24830): Exon 1 31531 31373 ( 159 n); cDNA 1 157 ( 157 n); score: 0.950 Intron 1 31372 31091 ( 282 n); Pd: 0.344 (s: 0.90), Pa: 0.000 (s: 0.62) Exon 2 31090 31051 ( 40 n); cDNA 158 197 ( 40 n); score: 0.625 Intron 2 31050 27344 (3707 n); Pd: 0.000 (s: 0.62), Pa: 0.715 (s: 0) Exon 3 27343 27332 ( 12 n); cDNA 198 209 ( 12 n); score: 0.833 Intron 3 27331 26859 ( 473 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 4 26858 26848 ( 11 n); cDNA 210 220 ( 11 n); score: 0.818 Intron 4 26847 26014 ( 834 n); Pd: 0.721 (s: 0), Pa: 0.000 (s: 0.54) Exon 5 26013 25935 ( 79 n); cDNA 221 299 ( 79 n); score: 0.563 Intron 5 25934 25737 ( 198 n); Pd: 0.000 (s: 0.60), Pa: 0.965 (s: 0) Exon 6 25736 25713 ( 24 n); cDNA 300 322 ( 23 n); score: 0.708 MATCH C04HBa0077O05.1- SGN-E578078+ 0.821 325 0.441 C PGS_C04HBa0077O05.1-_SGN-E578078+ (31531 31373,31090 31051,27343 27332,26858 26848,26013 25935,25736 25713) Alignment (genomic DNA sequence = upper lines): GAACTCATAA TGCCTATACC TGGTCCGAAA AGCAGTCTTG GGCACATCTG CTGCCCGTAT 31472 |||||||||| ||| ||||| |||||||||| |||||||||| |||||||||| |||| ||||| GAACTCATAA TGCTCATACC TGGTCCGAAA AGCAGTCTTG GGCACATCTG CTGCTCGTAT 60 TTTCAATTGA TGATAACCAG ATCTCAAGTC GATTTTTGAG AAGGTACAAG CACCTTGTAA 31412 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAATTGA TGATAACCAG ATCTCAAGTC GATTTTTGAG AAGGTACAAG CACCTTGTAA 120 CTGATCGAAC AAATCATCAA TGCGAGGAAG AGGATACTTG TTCTTAATCG TTACCTTATT 31352 |||||||||| |||||||||| || ||||||| | || || CTGATCGAAC AAATCATCAA TGTGAGGAAG A-TAT-TTT. .......... .......... 157 TAGTTGTCTG TAATCTATGC ACATCCTAAA ACTTCCACCC TTCTTCTTCA CAAACAAAAC 31292 .......... .......... .......... .......... .......... .......... 157 CGGAGCACCC CAAGGGGATG CACTTGGTCT AATGAAGCCT TTGCTCAACA ACTCTTGCAG 31232 .......... .......... .......... .......... .......... .......... 157 TTGGGCCTTT AACTCTCTTA ACTCCGCGGG AGCTATTGTA TAAGGGGGTA TAGAAATGGG 31172 .......... .......... .......... .......... .......... .......... 157 GCCAATACCC GGTTCAAGAT CAATGTAGAA GTCAATATCC CTATCTGGTG GCATACCAGG 31112 .......... .......... .......... .......... .......... .......... 157 AAGATCTGCA GGGAACACAT CCAGAAACTC ATGGACTACC GAAACTGACT CAATTGACGG 31052 | ||| || |||| | | ||||| |||||| || .......... .......... .CGAAAATTC TCTCACTATG GTGATTGACT CAATTGGAGG 196 TACTTGGGTA GTGTCATCCC TGAGGTGTGC CAAGAAAGCT AAACAACCCT TACTAACCAT 30992 A......... .......... .......... .......... .......... .......... 197 TCTCTTAGCA CGAAGAAAGG AGATGATACG AACCGGGTTG GAAGTGTAGT TACCCTCCCA 30932 .......... .......... .......... .......... .......... .......... 197 CACTAACGGA TCTGTCCCAG GCTTGGCTAA CGTCACAGTT TTAGCATTAC AATCCAAGAT 30872 .......... .......... .......... .......... .......... .......... 197 TGCAAAATTT GGAGAAAGCC AAGTCATACC CAGAATTACA TCGAAGTCAA CCATTTCTAA 30812 .......... .......... .......... .......... .......... .......... 197 GATAACCAAG TCTACATGAG TATTGCTCCC CACAAAAGTC ACCAGACCAG ACCTATATAC 30752 .......... .......... .......... .......... .......... .......... 197 TTTTTCAACT ATCACAGACT CACCCACCGG AGTAGAAACA CGAATAGGCA TGTCAAGCAA 30692 .......... .......... .......... .......... .......... .......... 197 TTCACAATGT AAATTAAGAC CATTAGCAAA TGAGGAAGAT ACATAAGAAA ATGTGGATCC 30632 .......... .......... .......... .......... .......... .......... 197 AGGATCAAAC AATACAGAAG CCATGCAATC ACAAACCAAA AGATTACCTG TGATAACAAC 30572 .......... .......... .......... .......... .......... .......... 197 ATCAGATGTC TCCGCTTCAG ACCGCCCAGG GAAGGCGTAA CAATGGGCCC TATCACCTGT 30512 .......... .......... .......... .......... .......... .......... 197 TTGCCCGTTA CCCCAACCAT GCTGCACCGC AGCCAGTTTG CCCGCCACCC CGGTTGGTTT 30452 .......... .......... .......... .......... .......... .......... 197 GGTGACCATC ATTACCTCGG CCACCACGTT CTCCAGGATA ACGACCTCTT CTATGACCAC 30392 .......... .......... .......... .......... .......... .......... 197 CTCTACCTCT AACTATTGGA GGTCTGTAAC TCTGTTTTGG ACAATACCTC TTAATGTGTC 30332 .......... .......... .......... .......... .......... .......... 197 CAGTCTCCCC ACATCCATAA CACTCTCTGG ATTTAAGCAT AGGTCTCTCA GAGAAGTGTT 30272 .......... .......... .......... .......... .......... .......... 197 GACCGGTCTA AGGTGGACCC CCAACTACAG TCTGTAGTGA AGACTGAATT GGTCGGACTG 30212 .......... .......... .......... .......... .......... .......... 197 AGTAACCTCC TGAACCCTGT CCTCTAGAGT AAGAACCATT AAACTCACCT CCCCTTCGAA 30152 .......... .......... .......... .......... .......... .......... 197 AACTTTTTGA TGTCGATGCC ATGGTGAAGT CATCTGGCTT CACTCCTTCC ACCTCTATCA 30092 .......... .......... .......... .......... .......... .......... 197 CGAAGTCCAC CACTTCTTGA AAGGATTTTG CCGTAGTCGC TACCTATAAG GCTAAAAATC 30032 .......... .......... .......... .......... .......... .......... 197 CGCAATTCTG ACCTCAACCC CTTCACAAAA CGGCAAATCC GCTCTTATGG ACTGAAACAA 29972 .......... .......... .......... .......... .......... .......... 197 AGCTGAGTGG CATATCTGGA AAGTTCACGA AACTTAGCCT CATATGCAGT AACCGACATC 29912 .......... .......... .......... .......... .......... .......... 197 TTACCTTGCT CTAGGCTCAA GAATTCATCT CTTTTCCTAT CCCTCAAAGT TCGGGGGATA 29852 .......... .......... .......... .......... .......... .......... 197 TACTTCTCCA TAGACAAGCT AGAGAATGAT GCCCAAGTCA TAGGTGGTGC CTCTGTTGGT 29792 .......... .......... .......... .......... .......... .......... 197 TGACACTCCA CATGCGACCG CCACCACATT TTGGCGTTCC CTTGAAACTG ATAAGTCACA 29732 .......... .......... .......... .......... .......... .......... 197 AACTCAACAC CAAACCGTTC TACTATACCC ATCTTGTGTA GTAGCTCATG AAACTCAACC 29672 .......... .......... .......... .......... .......... .......... 197 AGAAAATCGT ATGCATCCTC AGATTCAGCA CCCTTGAAGA CTGGAGGTTT CAATTTCAAG 29612 .......... .......... .......... .......... .......... .......... 197 AACTTACTGA AAAGTTCATG CTGATCATTT GTCATTATAG GCCCTGTAGT CAGACGAGGA 29552 .......... .......... .......... .......... .......... .......... 197 AATGTGCCTA TTTACAATGA GGCATCCATG CAGGGAGCCA CAGTAGTCGC ATGTTGTACC 29492 .......... .......... .......... .......... .......... .......... 197 TCCGGAGCCT GAGGTGCTGG TGCAGAAAAC ACTGGAGGTG TCTGGCCTTG ATCAGATAGC 29432 .......... .......... .......... .......... .......... .......... 197 CCGCTAAGAT AAGCAAGAAC CTGATTGATC ATCTCTGGGG TAGGTTGGGG TGGCAATTCC 29372 .......... .......... .......... .......... .......... .......... 197 TCATTCTGTA CTTGCTCATT TTCCCTTTCC TCACCCTCTC TTACCACTTC CTCAGTTGGT 29312 .......... .......... .......... .......... .......... .......... 197 GGAGGAGTCA CCGCCCTAGT ACCAGATGGG CTAGGTGCTC GTCCTCTTCT CCTAGAGGAC 29252 .......... .......... .......... .......... .......... .......... 197 GTCCTCCCAC GATCTCTTCC GCGGCCTCTT GCCACTGCTC CTCTTCGAGC TACAGTCTCA 29192 .......... .......... .......... .......... .......... .......... 197 GTGGCTGGCT CAGATGCATC TTGTCTTGCT GATGTTGATG TTGGCGCGGT CGTTGCTCTA 29132 .......... .......... .......... .......... .......... .......... 197 GTTCTAACCA TCTGCGAAAT AGAGTGAAGA TGGTCAGATA CCAATTTGTA TCACCTAGAT 29072 .......... .......... .......... .......... .......... .......... 197 ACCAATTGGA TCCAAGTAAT AACACAAAAG AAAGAAAGAA AGAATGGAAT TTTCCTAAAG 29012 .......... .......... .......... .......... .......... .......... 197 TCTTATAGCC TCTCAAAGAA AAGTAAAGGC GTCCCCCTAC CGTTCCTTAA GACTCTACTA 28952 .......... .......... .......... .......... .......... .......... 197 GACTCGTTCT TGTGTGATGA GACCAACGAA CCTAATGCTC TGATACCAAG TTTGTCACGA 28892 .......... .......... .......... .......... .......... .......... 197 CCCAAATCGG GTCGCGACTG GCACCCACAC TTACCCTCCT ATGTGAGCGA ACCAACCAAT 28832 .......... .......... .......... .......... .......... .......... 197 CTAAACCTTA ACATTTCAAT ATAATATCAA CAGAAAGTAA TGCGGAAGAC TTAAACTCAT 28772 .......... .......... .......... .......... .......... .......... 197 TAATAAAAAC CAATTCAATA ACTTCTAAAA ACTCAACAAC TATTATTATC CCCAAAATCT 28712 .......... .......... .......... .......... .......... .......... 197 GGAAGTCATT ATCACAAGAA CATCTACTTC AAATTACTAA ATCTAAGAGT ATCTAAGAAG 28652 .......... .......... .......... .......... .......... .......... 197 TTAAAATACA TAAACAGCTA GTCCATGCCG GAACTTCAAG GCATCAAGAC ATAAAGAAGA 28592 .......... .......... .......... .......... .......... .......... 197 AGATCCAGTC CAAGCTAGAA GCTTTAGCTC ACCCTGAAAT CTAGTGTGAT GAAGACTGGC 28532 .......... .......... .......... .......... .......... .......... 197 TAGAGTTGCG GTTGGATTGA AGACGACGAT ACGTTTGCTG CACTCCACAA TGAACAAAAA 28472 .......... .......... .......... .......... .......... .......... 197 GAAAACATAC AAGTAGGGGT CAGTAGAAAA CACGAGTACT GAGTAGATAT CATCGGCCAA 28412 .......... .......... .......... .......... .......... .......... 197 CTCAAAATAG AAAACAGTAT ATATCAGATA ATATCATAAA ATCAACTACA GTACTTAACA 28352 .......... .......... .......... .......... .......... .......... 197 TGCAACATTT ACAATTACCA TAACCCTTGG TCATAACACC AAACTCATCA ATGAGGACTC 28292 .......... .......... .......... .......... .......... .......... 197 ACACCTCCCC ATCATACTCA TTTGGGAATT AGGTTCATTA AATTAAGTAT ATTAACATAT 28232 .......... .......... .......... .......... .......... .......... 197 TTCAAGATTC ATTCTCTTTA CTAATCCTGG TGCCGGAACG TGACACTCCG ATCCTCATAT 28172 .......... .......... .......... .......... .......... .......... 197 ACTATCCTGG TACCAGAATG TGGCACCCGA TCCATATACT ATCCTGGTGT CGGAACGTGA 28112 .......... .......... .......... .......... .......... .......... 197 CACTCCGATC CTCATAAACT ATCCTGGTAC CGGAACGTGG CACCCGATCC ATATACTATC 28052 .......... .......... .......... .......... .......... .......... 197 CTGGTGTCGG AACGTGACAC CCGATCCATA TACTATCCTG GTGTCGGAAC TTGACACTCC 27992 .......... .......... .......... .......... .......... .......... 197 GATCCTCACA TACTATCCTG GTACCGGAAC GTGGCACCCG ATCCATATAC TATTCTGGTG 27932 .......... .......... .......... .......... .......... .......... 197 TCGGAACGTG ACACTCCGAT CCTCATATAC TATCCTGGTA CCGGAACGTG GCACCCGATC 27872 .......... .......... .......... .......... .......... .......... 197 CCCTAATCTC ACTACTTTCG TTCATCAAGC CTTCTTTTAT ACCAAGGCAT CATCATTAAC 27812 .......... .......... .......... .......... .......... .......... 197 AAAGTAGATT AGGGCTTTTC AAGATTTAAG ATTCAAGAGC TTCATCATGC TTATTCATCA 27752 .......... .......... .......... .......... .......... .......... 197 CAATTATATA ATCACATCAT GTAAGGATAC AATTAATCAC ATAGAAGGGT TTACAACACT 27692 .......... .......... .......... .......... .......... .......... 197 ACCCAATACA TATCATTCGC TATTAAGAGT TTACTACGAA TAGTATAAAA ACCATAACCT 27632 .......... .......... .......... .......... .......... .......... 197 ACCTCCACCG AAGATTAGTG ATCAAGCAAG CAAATTCCCC AAAGCTTTGT ATTTTCCTCT 27572 .......... .......... .......... .......... .......... .......... 197 TCTCGTTCGA TCCTCTCTCT CTCTTTGTTC TTTCTATTTT CTTTATTCAA ACCCTCTTTC 27512 .......... .......... .......... .......... .......... .......... 197 TTTTACCCTA ATTAGCATAT AATTAAGAAT AAAAGATGGC AATAATAACC CACTAATTTA 27452 .......... .......... .......... .......... .......... .......... 197 CTCAAGGTTA CCTCTTTTAA CCCCCAAGTA ATTAGACTTA TTAACATTAA CCCACTAACT 27392 .......... .......... .......... .......... .......... .......... 197 TTATAATTAA AACAGGAATA GTCAAAAACT TCCTTTAAAA CATTAAAGAA ATCCGACTCA 27332 | ||| |||||| .......... .......... .......... .......... ........AT ATCGGACTCA 209 GCCTGGGATT ACGCAGCCTG TGACGGCCTG TCATGCCTGC GACGGTCCGT CCTGCTGCTC 27272 .......... .......... .......... .......... .......... .......... 209 CGTCACAGAG TTCAGAGACT CAATTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 .......... .......... .......... .......... .......... .......... 209 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGATTTCAGT ACCCATTTTT 27152 .......... .......... .......... .......... .......... .......... 209 CAGAATTTCA AAGTGTTTTG AAACGAGACC CCCTCGACGG TCCGTCGTGC CCATGACGGT 27092 .......... .......... .......... .......... .......... .......... 209 CCGTCGTGGA ATCCGTCGTC TCAGCCAGTT TTCCAGAAAT AACATCTCTT GCTCAAAACG 27032 .......... .......... .......... .......... .......... .......... 209 ACTAAACAGG TCGTTACAAT AAATATTAGG TATAATAGAT AAATTTATCA TTTTACCTGA 26972 .......... .......... .......... .......... .......... .......... 209 TCTTATTTCA CATGTATGTC ATCTATTTTT AGGTGTGTAT AAATAGATAT TTAAATTAAA 26912 .......... .......... .......... .......... .......... .......... 209 TTTGTATAAA GTTGAAGTAG ACACTGAATT CTACGAGACA TAATACAAGT AAGAGATCTA 26852 |||||| .......... .......... .......... .......... .......... ...AGATCTT 216 GGACGCAAAT TGTCATGTAA GATGACACGC AAAAATGTGT GTATTTATTT ATTCAACGAA 26792 ||| TGAC...... .......... .......... .......... .......... .......... 220 TTTATAGAAA TATAAGTATC TACTCGTGCA CACTCAAAAA TAAAGAATAT AAATATAAGT 26732 .......... .......... .......... .......... .......... .......... 220 GATAAGAGCA TATTTATATA TTATGTCTAA CTATTAATTT GATGTCCGTT GATCACATAA 26672 .......... .......... .......... .......... .......... .......... 220 AAATTGAACC AAATGAATCA TTTCCTACTT ATTCTTAATA TACTTAAATT AGTTATCTTC 26612 .......... .......... .......... .......... .......... .......... 220 CATTATAACA TATACAATTC ATTCATTATT CGTAACTATC CTTTGTAAAT ATAGGTGCAT 26552 .......... .......... .......... .......... .......... .......... 220 CGTATGTTTA ATATATGGAT GAAATATTAA TGAAGATGTA TAAATTTTAT ACGAGAGTTA 26492 .......... .......... .......... .......... .......... .......... 220 TACCATTAAA ATTAAAATTT ATAATGCTTG GTATAAAATT ATACCAAGAA AAATGTTTTG 26432 .......... .......... .......... .......... .......... .......... 220 CATGAATATC ATCTTAAACA AAACAACACA CAAATATGCA ATTCGAATGT GCATAGAACC 26372 .......... .......... .......... .......... .......... .......... 220 AAATATCCCA TAAATTTAAG GTCAATGAGC TAGAGTTCAC CCAGGCAAGC AGCCTTATTT 26312 .......... .......... .......... .......... .......... .......... 220 CCCCCCCCAA ATTTAGGCCT TATTTTTTTT CTTTAAGATT AACATGTCTG AATTTGAATA 26252 .......... .......... .......... .......... .......... .......... 220 AACATTTGAA TAATTTTGTG TCTAAGTTTA AACATTAAAT GATTAATATT ATTTATTTTT 26192 .......... .......... .......... .......... .......... .......... 220 TATCATCTGA ATATGAGTAA TTATTTATAA TTAAACATTA TAAATATATA ATTTAAAATA 26132 .......... .......... .......... .......... .......... .......... 220 AGAAAGTAAT TAACCATCGT TTTTTTTTTT CTCAAAGCAT ATTTAAAAAG AGGAGGTTGT 26072 .......... .......... .......... .......... .......... .......... 220 TCGATTTTGT AACTACACAA TTAAGAATAA AACGGTACTT GCCGATGATA AAATATCTAC 26012 | .......... .......... .......... .......... .......... ........TC 222 TTTGAATGCT CTTCTTTCAA AAATTAGTGT GTATAATGAA TTTTTTTTAA AAAAAAGAT- 25953 || ||| | |||| | || | | ||| || | | |||||| | || |||| TTACAATATG GTAAATTCAC ACTTTTGAGA TTATTTTGCA -ATATTTTAA ACAAGAGATG 281 ATATTTACAT TAGATATGAT GCAGTTAAAC AGTTATTGAA ACATGAGGTT ATTTTCTTAG 25893 |||| | | ||| || ATATGACCTT TAGGAATT.. .......... .......... .......... .......... 299 AATGTGTAAG GTCCTAAAAG TTATTTGTAA TCTTTTAACT AAGGAATTTG ACTTGAAAAT 25833 .......... .......... .......... .......... .......... .......... 299 GAATAAATGG TCTTTACCTC GAAGGAGATG AAACGGGATG GTGCTAAAGC CCATTGATTG 25773 .......... .......... .......... .......... .......... .......... 299 AGATAATATG ACACAAGGCC ATATTTTTTG ATGCAGATAG TAGGGGCGAT TCAACTCTAA 25713 | | || || || || ||||||| .......... .......... .......... ......AAAT TA-CTGCCAT TCCACTCTAA 322 hqPGS_C04HBa0077O05.1-_SGN-E578078+ (31531 31373,31090 31051,27343 27332,26858 26848,26013 25935,25736 25713) ******************************************************************************** EST sequence 18 -strand 673 n (File: SGN-E550140-) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTACTCN 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATGTTATCAA CCATGAATTA ACAAAAAATT AGACCAAAAA 661 TATAAAAAAT TAC Predicted gene structure (within gDNA segment 28674 to 23750): Exon 1 27569 27003 ( 567 n); cDNA 2 565 ( 564 n); score: 0.865 Intron 1 27002 26226 ( 777 n); Pd: 0.949 (s: 0.80), Pa: 0.000 (s: 0) Exon 2 26225 26198 ( 28 n); cDNA 566 591 ( 26 n); score: 0.786 MATCH C04HBa0077O05.1- SGN-E550140- 0.865 595 0.884 C PGS_C04HBa0077O05.1-_SGN-E550140- (27569 27003,26225 26198) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||| ||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAA-TTACT 118 C-AAGGTTAC CTCTTTTAAC CCCCAAGTAA TTAGACTTAT TAACATTAAC CCACTAACTT 27391 | |||||||| |||||||||| ||||| |||| |||||||||| |||||| ||| |||||||||| CNAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTAAA ACAGGAATAG TCAAAAACTT CCTTTAAAAC AT-TAAAGAA ATCCGACTCA 27332 |||||||||| |||||||| || ||||| | || ||||||| | ||||||| ||||||| || TATAATTAAA GTAGGAATAG TCCAAAACGT CCCTTAAAAC GTGTAAAGAA ATCCGACCCA 238 GCCTGGGATT ACGCAGCCTG TGACGGCCTG TCATGCCTGC GACGGTCCGT CCTGCTGCTC 27272 | |||||||| ||||| |||| ||| |||| | || ||||||| |||||||||| ||||| | | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGGT- 297 CGTCACAGAG TTCAGAGACT CAA-TTCCCT TAAAGAGTCT GTGACGGTCC GTCACGCCTG 27213 |||| || | |||||||||| ||| |||| ||||||||| |||||||||| |||||||| | CGTCGCAAGG TTCAGAGACT CAATTTCCAC CAAAGAGTCT GTGACGGTCC GTCACGCCCG 357 TGACGGTCCG TCCTGCCATT CCGTTACGAA GTTTAGAGAG TCGA-TTTCA GTACCCATTT 27154 |||||||||| || ||||||| |||||||||| ||| |||||| |||| ||| | ||||||| | TGACGGTCCG TCGTGCCATT CCGTTACGAA GTTCAGAGAG TCGATTTTTA GTACCCA-AT 416 TTCAGAATTT CAAAGTGTTT TGAAACGAGA CCCCCTCGAC GGTCCGTCGT GCCCATGACG 27094 |||||||||| | |||||||| |||||||||| | ||||||| ||||| |||| || ||||||| TTCAGAATTT CTAAGTGTTT TGAAACGAGA -CTCCTCGAC GGTCCATCGT GCTCATGACG 475 GTCCGTCGTG GAATCCGTCG TCTCAGCCAG -TTTTCCAGA AATAACATCT CTTGCTCAAA 27035 |||||||||| | ||||||| ||||| || | ||||||| | ||||| |||| | |||||| GTCCGTCGTG GGTTCCGTCG TCTCAACCTG TTTTTCCAAA AATAAAATCT GCTACTCAAA 535 ACGACTAAAC AGGTCGTTAC AATAAATATT AGGTATAATA GATAAATTTA TCATTTTACC 26975 |||||||||| |||||||||| || || || ACGACTAAAC AGGTCGTTAC -ATTTATGTT -C........ .......... .......... 565 TGATCTTATT TCACATGTAT GTCATCTATT TTTAGGTGTG TATAAATAGA TATTTAAATT 26915 .......... .......... .......... .......... .......... .......... 565 AAATTTGTAT AAAGTTGAAG TAGACACTGA ATTCTACGAG ACATAATACA AGTAAGAGAT 26855 .......... .......... .......... .......... .......... .......... 565 CTAGGACGCA AATTGTCATG TAAGATGACA CGCAAAAATG TGTGTATTTA TTTATTCAAC 26795 .......... .......... .......... .......... .......... .......... 565 GAATTTATAG AAATATAAGT ATCTACTCGT GCACACTCAA AAATAAAGAA TATAAATATA 26735 .......... .......... .......... .......... .......... .......... 565 AGTGATAAGA GCATATTTAT ATATTATGTC TAACTATTAA TTTGATGTCC GTTGATCACA 26675 .......... .......... .......... .......... .......... .......... 565 TAAAAATTGA ACCAAATGAA TCATTTCCTA CTTATTCTTA ATATACTTAA ATTAGTTATC 26615 .......... .......... .......... .......... .......... .......... 565 TTCCATTATA ACATATACAA TTCATTCATT ATTCGTAACT ATCCTTTGTA AATATAGGTG 26555 .......... .......... .......... .......... .......... .......... 565 CATCGTATGT TTAATATATG GATGAAATAT TAATGAAGAT GTATAAATTT TATACGAGAG 26495 .......... .......... .......... .......... .......... .......... 565 TTATACCATT AAAATTAAAA TTTATAATGC TTGGTATAAA ATTATACCAA GAAAAATGTT 26435 .......... .......... .......... .......... .......... .......... 565 TTGCATGAAT ATCATCTTAA ACAAAACAAC ACACAAATAT GCAATTCGAA TGTGCATAGA 26375 .......... .......... .......... .......... .......... .......... 565 ACCAAATATC CCATAAATTT AAGGTCAATG AGCTAGAGTT CACCCAGGCA AGCAGCCTTA 26315 .......... .......... .......... .......... .......... .......... 565 TTTCCCCCCC CAAATTTAGG CCTTATTTTT TTTCTTTAAG ATTAACATGT CTGAATTTGA 26255 .......... .......... .......... .......... .......... .......... 565 ATAAACATTT GAATAATTTT GTGTCTAAGT TTAAACATTA AATGATTAAT ATTATTT 26198 | | || ||| ||| |||| | ||||||| .......... .......... .........T TCCTAC-TTA AAT-ATTATT ATTATTT 591 hqPGS_C04HBa0077O05.1-_SGN-E550140- (27569 27003,26225 26198) ******************************************************************************** EST sequence 29 -strand 681 n (File: SGN-E389553-) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCGTTCC TACTTAAATA TTATTATTAT TTTACGATTT 601 ATAACACTAT TAGAAACAAA GATTTTCTCA ACCATGAATT AATGAAAAAA TTATGGAATA 661 AAATATAAAA AATTACTCAT T Predicted gene structure (within gDNA segment 28674 to 23670): Exon 1 27569 27003 ( 567 n); cDNA 2 566 ( 565 n); score: 0.873 Intron 1 27002 26226 ( 777 n); Pd: 0.949 (s: 0.82), Pa: 0.000 (s: 0) Exon 2 26225 26198 ( 28 n); cDNA 567 592 ( 26 n); score: 0.786 MATCH C04HBa0077O05.1- SGN-E389553- 0.873 595 0.874 C PGS_C04HBa0077O05.1-_SGN-E389553- (27569 27003,26225 26198) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 417 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACA GGTCGTTACA ATAAATATTA GGTATAATAG ATAAATTTAT CATTTTACCT 26974 |||||||||| ||||||||| || || || | CGACTAAACA GGTCGTTAC- ATTTATGTTC G......... .......... .......... 566 GATCTTATTT CACATGTATG TCATCTATTT TTAGGTGTGT ATAAATAGAT ATTTAAATTA 26914 .......... .......... .......... .......... .......... .......... 566 AATTTGTATA AAGTTGAAGT AGACACTGAA TTCTACGAGA CATAATACAA GTAAGAGATC 26854 .......... .......... .......... .......... .......... .......... 566 TAGGACGCAA ATTGTCATGT AAGATGACAC GCAAAAATGT GTGTATTTAT TTATTCAACG 26794 .......... .......... .......... .......... .......... .......... 566 AATTTATAGA AATATAAGTA TCTACTCGTG CACACTCAAA AATAAAGAAT ATAAATATAA 26734 .......... .......... .......... .......... .......... .......... 566 GTGATAAGAG CATATTTATA TATTATGTCT AACTATTAAT TTGATGTCCG TTGATCACAT 26674 .......... .......... .......... .......... .......... .......... 566 AAAAATTGAA CCAAATGAAT CATTTCCTAC TTATTCTTAA TATACTTAAA TTAGTTATCT 26614 .......... .......... .......... .......... .......... .......... 566 TCCATTATAA CATATACAAT TCATTCATTA TTCGTAACTA TCCTTTGTAA ATATAGGTGC 26554 .......... .......... .......... .......... .......... .......... 566 ATCGTATGTT TAATATATGG ATGAAATATT AATGAAGATG TATAAATTTT ATACGAGAGT 26494 .......... .......... .......... .......... .......... .......... 566 TATACCATTA AAATTAAAAT TTATAATGCT TGGTATAAAA TTATACCAAG AAAAATGTTT 26434 .......... .......... .......... .......... .......... .......... 566 TGCATGAATA TCATCTTAAA CAAAACAACA CACAAATATG CAATTCGAAT GTGCATAGAA 26374 .......... .......... .......... .......... .......... .......... 566 CCAAATATCC CATAAATTTA AGGTCAATGA GCTAGAGTTC ACCCAGGCAA GCAGCCTTAT 26314 .......... .......... .......... .......... .......... .......... 566 TTCCCCCCCC AAATTTAGGC CTTATTTTTT TTCTTTAAGA TTAACATGTC TGAATTTGAA 26254 .......... .......... .......... .......... .......... .......... 566 TAAACATTTG AATAATTTTG TGTCTAAGTT TAAACATTAA ATGATTAATA TTATTT 26198 || || |||| || |||| || |||||| .......... .......... ........TT CCTAC-TTAA AT-ATTATTA TTATTT 592 hqPGS_C04HBa0077O05.1-_SGN-E389553- (27569 27003,26225 26198) ******************************************************************************** EST sequence 2 -strand 605 n (File: SGN-E347579-) 1 ATCCCCTAAT TCTACGTGTC GGTTCGTGAC ACCCGATCCC CTAATTCTAC GTGTCGGTTC 61 GTGACACCTG ATCCCCTAAT CTACGTGCCG GTTCGTGACA CCCGATCCCC TAATTCTACG 121 TGCCAGTTCG TGACACCCGA TCCCCTAATT CTACGTGTCG GTTCGTGACA CCCGATCCCC 181 TGCATGTGTC GGTACGTGAC ACTCCGATCC ACTAATATCA TTCTGTAAAT CATCAGGCCT 241 TCTCTATACC AAGGCATCAT CAATCCCATT ACTTTTATTC ATCAAGCCTT CTTCTATACC 301 AAGGCATCAT CATTAATAAG AGATTAGATT TTTATCAAGA TTTGGGATTC AATAACTTCA 361 TCATGCTTAA TATAATCACA ATTATATAAT CACGTTCATG CATGCATACA ATTAAGCATA 421 TAGCAGGGTT TACAATACTA CCAATACATA TCATTCTCTA TTAAGAGTTT ACTATGAAAG 481 CATGAAAACC ATAACCTACC TCCACCGAAG ATTAGTGATC AAGCAAGCAA ATTTTTCTCC 541 AAGCTTTGTT TCTCCCTTCT CGTTCGATTC TTCCTCTCTC TCTTGTTCTT TCTATTTTCT 601 TTATT Predicted gene structure (within gDNA segment 31231 to 26276): Exon 1 28210 28099 ( 112 n); cDNA 77 180 ( 104 n); score: 0.723 Intron 1 28098 28017 ( 82 n); Pd: 0.000 (s: 0.76), Pa: 0.000 (s: 0.72) Exon 2 28016 27948 ( 69 n); cDNA 181 249 ( 69 n); score: 0.616 Intron 2 27947 27881 ( 67 n); Pd: 0.000 (s: 0.56), Pa: 0.000 (s: 0.76) Exon 3 27880 27525 ( 356 n); cDNA 250 605 ( 356 n); score: 0.822 MATCH C04HBa0077O05.1- SGN-E347579- 0.775 537 0.888 C PGS_C04HBa0077O05.1-_SGN-E347579- (28210 28099,28016 27948,27880 27525) Alignment (genomic DNA sequence = upper lines): TAATCCTGGT GCCGGAACGT GACACTCCGA TCCTCATATA CTATCCTGGT ACCAGAATGT 28151 ||||| || ||||| ||| ||||| |||| ||| | || ||| | | | |||| || TAATCTACGT GCCGGTTCGT GACAC-CCGA TCCCCTAATT CTA--C-G-T GCCAGTTCGT 131 GGCACCCGAT CCATATACTA TCCTGGTGTC GGAACGTGAC ACTCCGATCC TCATAAACTA 28091 | |||||||| || || | || ||||| || |||||| || ||||||| | GACACCCGAT CC-CCTAAT- TCTACGTGTC GGTTCGTGAC AC-CCGATCC CC........ 180 TCCTGGTACC GGAACGTGGC ACCCGATCCA TATACTATCC TGGTGTCGGA ACGTGACACC 28031 .......... .......... .......... .......... .......... .......... 180 CGATCCATAT ACTATCCTGG TGTCGGAACT TGACACTCCG ATCCTCACAT ACTATCCTGG 27971 | | | |||||| || |||||||||| |||| | || | || ||| .......... ....TGCATG TGTCGGTACG TGACACTCCG ATCCACTAAT ATCATTCTG- 225 TACCGGAACG TGGC-ACCCG ATCCATATAC TATTCTGGTG TCGGAACGTG ACACTCCGAT 27912 || | | | | | | || | TAAATCATCA GGCCTTCTCT ATAC...... .......... .......... .......... 249 CCTCATATAC TATCCTGGTA CCGGAACGTG GCACCCGATC CCCTAATCTC ACTACTTTCG 27852 || ||| | |||| | | |||||| .......... .......... .......... .CAAGGCATC ATC-AATCCC ATTACTTTTA 277 TTCATCAAGC CTTCTTTTAT ACCAAGGCAT CATCATTAAC AAAGTAGATT AGGGCTTT-T 27793 |||||||||| |||||| ||| |||||||||| ||||||||| ||| ||||| || ||| | TTCATCAAGC CTTCTTCTAT ACCAAGGCAT CATCATTAA- TAAG-AGATT AGATTTTTAT 335 CAAGATTTAA GATTCAAGAG CTTCATCATG CTT-AT-TCA TCACAATTAT ATAATCAC-A 27736 |||||||| ||||||| | |||||||||| ||| || | | |||||||||| |||||||| CAAGATTTGG GATTCAATAA CTTCATCATG CTTAATATAA TCACAATTAT ATAATCACGT 395 TCATGTAAGG ATACAATTAA TCACATAGAA GGGTTTACAA CACTACCCAA TACATATCAT 27676 ||||| | | |||||||||| || |||| | |||||||||| |||| |||| |||||||||| TCATGCATGC ATACAATTAA GCATATAGCA GGGTTTACAA TACTA-CCAA TACATATCAT 454 TCGCTATTAA GAGTTTACTA CGAATAGTAT AAAAACCATA ACCTACCTCC ACCGAAGATT 27616 || ||||||| |||||||||| ||| || || ||||||||| |||||||||| |||||||||| TCTCTATTAA GAGTTTACTA TGAA-AGCAT GAAAACCATA ACCTACCTCC ACCGAAGATT 513 AGTGATCAAG CAAGCAAA-- TTCCCCAAAG CTTTGTATTT TCCTCTTCTC GTTCGATCCT 27558 |||||||||| |||||||| || | | ||| |||||| || ||| |||||| ||||||| || AGTGATCAAG CAAGCAAATT TTTCTCCAAG CTTTGT-TTC TCC-CTTCTC GTTCGATTCT 571 CTCTCTCTCT -TTGTTCTTT CTATTTTCTT TATT 27525 |||||||| ||||||||| |||||||||| |||| TCCTCTCTCT CTTGTTCTTT CTATTTTCTT TATT 605 hqPGS_C04HBa0077O05.1-_SGN-E347579- (28210 28099,28016 27948,27880 27525) ******************************************************************************** EST sequence 77 -strand 515 n (File: SGN-E242359-) 1 AGTATGTATT AAGCAATATC ATAAAATTAA CTAATATCCT TAGCATGCAG CATTTGCAAT 61 TACCATAACC CTTGGTTGCA TCACCAAGCA CATCAATGAG GACTCACACC TCCTCATCAT 121 ACTTATTTGG GAATTTAGTT CATTGGATTG CATATATTAA CATATTTCAA GATTCATCAT 181 ATTTATTCCC CTCGTGTCCT TACGTGACAC TCCACTCCTC AATATACTAT CCTGGCACCG 241 GAACGTGGCA CCCGATCCAT ATTCTATCCT GGTGTCAGAA CGTGACACCC GATCCATATT 301 CTATCCTGGT GTCGGAACGT GACACCCGAT CCATATTCTA TCCTGGTACC GGAACGTGGC 361 ACCCGATCCA TATTCTATCC TGGTGTCGGA ACGTGACACC CGATCCATAT TCTATCCTGG 421 TACCGGAACG TGGCACCCGA TCCCCTAATC TCACCACTTT CGTTCATCAA GCCTTCTTTT 481 ATACCAAGGC ATCATTATTA ACAAAGTAGA TTAGG Predicted gene structure (within gDNA segment 31743 to 26038): Exon 1 28396 28209 ( 188 n); cDNA 1 188 ( 188 n); score: 0.824 Intron 1 28208 28131 ( 78 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0.77) Exon 2 28130 27799 ( 332 n); cDNA 189 515 ( 327 n); score: 0.914 MATCH C04HBa0077O05.1- SGN-E242359- 0.882 520 1.010 C PGS_C04HBa0077O05.1-_SGN-E242359- (28396 28209,28130 27799) Alignment (genomic DNA sequence = upper lines): AGTATATATC AGATAATATC ATAAAATCAA CTACAGTACT TAACATGCAA CATTTACAAT 28337 ||||| ||| | |||||| ||||||| || ||| | || || |||||| ||||| |||| AGTATGTATT AAGCAATATC ATAAAATTAA CTAATATCCT TAGCATGCAG CATTTGCAAT 60 TACCATAACC CTTGGTCATA ACACCAAACT CATCAATGAG GACTCACACC TCCCCATCAT 28277 |||||||||| |||||| | |||||| | |||||||||| |||||||||| ||| |||||| TACCATAACC CTTGGTTGCA TCACCAAGCA CATCAATGAG GACTCACACC TCCTCATCAT 120 ACTCATTTGG GAATTAGGTT CATTAAATTA AGTATATTAA CATATTTCAA GATTCATTCT 28217 ||| |||||| ||||| ||| |||| ||| |||||||| |||||||||| ||||||| | ACTTATTTGG GAATTTAGTT CATTGGATTG CATATATTAA CATATTTCAA GATTCATCAT 180 CTTTACTAAT CCTGGTGCCG GAACGTGACA CTCCGATCCT CATATACTAT CCTGGTACCA 28157 |||| | ATTTATTC.. .......... .......... .......... .......... .......... 188 GAATGTGGCA CCCGATCCAT ATACTATCCT GGTGTCGGAA CGTGACACTC CGATCCTC-A 28098 ||| ||||| | |||||||||| | ||||| | .......... .......... ......CCCT CGTGTCCTTA CGTGACACTC CACTCCTCAA 222 TAAACTATCC TGGTACCGGA ACGTGGCACC CGATCCATAT ACTATCCTGG TGTCGGAACG 28038 || ||||||| ||| |||||| |||||||||| |||||||||| ||||||||| |||| ||||| TATACTATCC TGGCACCGGA ACGTGGCACC CGATCCATAT TCTATCCTGG TGTCAGAACG 282 TGACACCCGA TCCATATACT ATCCTGGTGT CGGAACTTGA CACTCCGATC CTCACATACT 27978 |||||||||| ||||||| || |||||||||| |||||| ||| ||| ||||| | || || || TGACACCCGA TCCATATTCT ATCCTGGTGT CGGAACGTGA CAC-CCGAT- C-CATATTCT 339 ATCCTGGTAC CGGAACGTGG CACCCGATCC ATATACTATT CTGGTGTCGG AACGTGACAC 27918 |||||||||| |||||||||| |||||||||| |||| |||| |||||||||| |||||||||| ATCCTGGTAC CGGAACGTGG CACCCGATCC ATATTCTATC CTGGTGTCGG AACGTGACAC 399 TCCGATCCTC ATATACTATC CTGGTACCGG AACGTGGCAC CCGATCCCCT AATCTCACTA 27858 ||||| | | |||| ||||| |||||||||| |||||||||| |||||||||| |||||||| | -CCGAT-C-C ATATTCTATC CTGGTACCGG AACGTGGCAC CCGATCCCCT AATCTCACCA 456 CTTTCGTTCA TCAAGCCTTC TTTTATACCA AGGCATCATC ATTAACAAAG TAGATTAGG 27799 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ||||||||| CTTTCGTTCA TCAAGCCTTC TTTTATACCA AGGCATCATT ATTAACAAAG TAGATTAGG 515 hqPGS_C04HBa0077O05.1-_SGN-E242359- (28396 28209,28130 27799) ******************************************************************************** EST sequence 226 +strand 686 n (File: SGN-E241789+) 1 ATGTCTGATC TTCAAGGACA TCAAGACATG AATGAGAGAG AATCCAGTCC GAGCTAGGAA 61 CAATAGCTCA CCCTGAAATC TGACGTGATG AAGACTGGTT AGAGTTGCGG TTGAGTTGAA 121 GACGACGGTA CGTTTGCTGC ACTCCACAAT TAACAAAAAG AAAACATAAA AGTAGGGGTC 181 AGTACAAACA CGAGTACTGA GTAGATATCA TCGGCCAACT CAGAATAGAG AACAATATAT 241 ATCAAATAAT AAAATAAAAT CAACCATAAC ACTTAACAGG TGACAACAAC AAGTACCATA 301 ACCATTGGGC ACAACCCAAG AACATCTATG AGGACTCAAG CCTCCACACC ATACTCATTT 361 GGGAAACAGG TTCATTAAAT TGAGTACATT AACATAATTC AAGATTCATT CTTTTTACTA 421 TCGTGGTGTC GGAACGTGAT ACTCCGATCC CCTAATGCTA CGTGTCGGTT CGTGACACCC 481 GATCCCCTAA TACTACGTGT CGGTTCGTTA CACCCGATCT CCTAATACTA CGTGCCGATT 541 CGTGACACCC GATCCATTAA TACTATGTGT CGGTTCGTGA CACCCGATCC ATTAATACTA 601 CGTGTCGGTT CGTGACACCC GATCCCCTAA CCTCATTCTT TTAGTTCATC AAGCCTTCTT 661 TTATACCAAG ACATCATCAT TAACAA Predicted gene structure (within gDNA segment 30382 to 23158): Exon 1 28627 28167 ( 461 n); cDNA 1 461 ( 461 n); score: 0.841 Intron 1 28166 28049 ( 118 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0.72) Exon 2 28048 27810 ( 239 n); cDNA 462 686 ( 225 n); score: 0.774 MATCH C04HBa0077O05.1- SGN-E241789+ 0.818 700 1.020 C PGS_C04HBa0077O05.1-_SGN-E241789+ (28627 28167,28048 27810) Alignment (genomic DNA sequence = upper lines): ATGCCGGAAC TTCAAGG-CA TCAAGACAT- AAAGA-AGAA GATCCAGTCC AAGCTAGAAG 28571 ||| | || | ||||||| || ||||||||| || || ||| ||||||||| |||||| | ATGTCTGATC TTCAAGGACA TCAAGACATG AATGAGAGAG AATCCAGTCC GAGCTAGGAA 60 CTTTAGCTCA CCCTGAAATC TAGTGTGATG AAGACTGGCT AGAGTTGCGG TTGGATTGAA 28511 | ||||||| |||||||||| | |||||| |||||||| | |||||||||| ||| ||||| CAATAGCTCA CCCTGAAATC TGACGTGATG AAGACTGGTT AGAGTTGCGG TTGAGTTGAA 120 GACGACGATA CGTTTGCTGC ACTCCACAAT GAACAAAAAG AAAACATACA AGTAGGGGTC 28451 ||||||| || |||||||||| |||||||||| ||||||||| |||||||| | |||||||||| GACGACGGTA CGTTTGCTGC ACTCCACAAT TAACAAAAAG AAAACATAAA AGTAGGGGTC 180 AGTAGAAAAC ACGAGTACTG AGTAGATATC ATCGGCCAAC TCAAAATAGA AAACAGTATA 28391 |||| |||| |||||||||| |||||||||| |||||||||| ||| |||||| |||| |||| AGTA-CAAAC ACGAGTACTG AGTAGATATC ATCGGCCAAC TCAGAATAGA GAACAATATA 239 TATCAGATAA TATCATAAAA TCAACTACAG TACTTAACAT GCAACATTTA CAATTACCAT 28331 ||||| |||| || |||||| ||||| | | |||||||| | ||| | ||| |||||| TATCAAATAA TAAAATAAAA TCAACCATAA CACTTAACAG GTGACAACAA CAAGTACCAT 299 AACCCTTGGT CATAACACCA AACTCATCAA TGAGGACTCA CACCTCCCCA TCATACTCAT 28271 |||| |||| || ||| ||| | |||| | |||||||||| ||||| || ||||||||| AACCATTGGG CACAAC-CCA AGAACATCTA TGAGGACTCA AGCCTCCACA CCATACTCAT 358 TTGGGAATTA GGTTCATTAA ATTAAGTATA TTAACATATT TCAAGATTCA TTCTCTTTAC 28211 ||||||| | |||||||||| ||| |||| | |||||||| | |||||||||| |||| ||||| TTGGGAAACA GGTTCATTAA ATTGAGTACA TTAACATAAT TCAAGATTCA TTCTTTTTAC 418 TAATCCTGGT GCCGGAACGT GACACTCCGA TCCTCATATA CTATCCTGGT ACCAGAATGT 28151 | ||| |||| | |||||||| || ||||||| ||| | || ||| T-ATCGTGGT GTCGGAACGT GATACTCCGA TCCCCTAATG CTAC...... .......... 461 GGCACCCGAT CCATATACTA TCCTGGTGTC GGAACGTGAC ACTCCGATCC TCATAAACTA 28091 .......... .......... .......... .......... .......... .......... 461 TCCTGGTACC GGAACGTGGC ACCCGATCCA TATACTATCC TGGTGTCGGA ACGTGACACC 28031 ||||||| ||||||||| .......... .......... .......... .......... ..GTGTCGGT TCGTGACACC 479 CGATCCATAT ACTATCCTGG TGTCGGAACT TGACACTCCG ATCCTCACAT ACTATCCTGG 27971 |||||| | | || | | |||||| | | |||| ||| || ||| | | | || | | CGATCC-CCT AATA-CTACG TGTCGGTTCG TTACAC-CCG AT-CTC-C-T AATA-CTACG 532 TACCGGAACG TGGCACCCGA TCCATATACT ATTCTGGTGT CGGAACGTGA CACTCCGATC 27911 | ||| || || ||||||| ||||| || | | | | |||| ||| ||||| ||| |||||| TGCCGATTCG TGACACCCGA TCCAT-TAAT ACTAT-GTGT CGGTTCGTGA CAC-CCGATC 589 CTCATATACT ATCCTGGTAC CGGAACGTGG CACCCGATCC CCTAATCTCA CTACTTTCGT 27851 | ||||| | | | || ||| |||| |||||||||| ||||| |||| | ||| || CATTAATACT A-CGT-GT-- CGGTTCGTGA CACCCGATCC CCTAACCTCA TTCTTTTAGT 645 TCATCAAGCC TTCTTTTATA CCAAGGCATC ATCATTAACA A 27810 |||||||||| |||||||||| ||||| |||| |||||||||| | TCATCAAGCC TTCTTTTATA CCAAGACATC ATCATTAACA A 686 hqPGS_C04HBa0077O05.1-_SGN-E241789+ (28627 28167,28048 27810) ******************************************************************************** EST sequence 5 -strand 774 n (File: SGN-E349977-) 1 AGTAGATATC ATCGCTAACT CAAAATAGGG AACAATATAT ATCAATAATA ATGTAAATCA 61 ACTACAATAC TCATCATGTA GCAATAGCAA TTTCTTNATC ATTAACAATT ACCGTCAAGT 121 TCACACATGA GGACTCAAGC CTCAATACCA TACTCATTTG GGAATTAAGT TCATTAGATT 181 GAGTATATTC ATTATCTTTC AAGATTCATT ATCTTTCTTC CTCTTGTGTC GGTACGTGAC 241 ACTCCGCTCC TCTATTTCTA TCCTGGTGCC GGAACGTGGC ACTCCGATCC TCATATTCAT 301 TCTATCCTGG TACCGGAACG TGGCACCCGA TCCTCATATT CTATCCTGGT GTCGGAACGT 361 AACACTCCGA TCCTCATATT CATTCTATCC TGGTACCGGA ACGTGGCACC CGATCCTCAT 421 ATTCTATCCT GGTGTCGGAA CGTGACACTC CGATCCTCAT ATTCTATCCT GGTGTCGGAA 481 CGTGACACTC CGATCCTCAT ATTCATTCTA TCCTGGTACC GAAACGTGGC ACCCGATCCC 541 CTAATTCATC AAGCCTTCTT CTACACTAAG GCATCATCAT TCTCATTATA TAATTTATCA 601 AGCCTTCTCT CATACTAAGG CCTCATCAAT CTTATTATAT AATATATCAA GTGAATTAGG 661 GTTCTTTCAA GATTTGGGAT TCAATAGCTT CATCATGCTT TGTTAATTCA TAACAATTTC 721 ATAATCATAA TCATGCAAGC ATACCAATAA GCATATAGAC AGGTTTACAA CATC Predicted gene structure (within gDNA segment 32332 to 24634): Exon 1 28430 28132 ( 299 n); cDNA 1 297 ( 297 n); score: 0.747 Intron 1 28131 28098 ( 34 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.81) Exon 2 28097 28018 ( 80 n); cDNA 298 380 ( 83 n); score: 0.806 Intron 2 28017 27984 ( 34 n); Pd: 0.000 (s: 0.73), Pa: 0.000 (s: 0.83) Exon 3 27983 27853 ( 131 n); cDNA 381 512 ( 132 n); score: 0.836 MATCH C04HBa0077O05.1- SGN-E349977- 0.779 510 0.659 C PGS_C04HBa0077O05.1-_SGN-E349977- (28430 28132,28097 28018,27983 27853) Alignment (genomic DNA sequence = upper lines): AGTAGATATC ATCGGCCAAC TCAAAATAGA AAACAGTATA TATCAGATAA TATCATAAAA 28371 |||||||||| ||| || ||| ||||||||| |||| |||| ||||| |||| || | ||| AGTAGATATC ATC-GCTAAC TCAAAATAGG GAACAATATA TATCA-ATAA TAATGT-AAA 57 TCAACTACAG TACTTAACAT GCAACATTTA CAATTACCAT AACCCTTGGT CA-TAACACC 28312 ||||||||| |||| | ||| | | || | ||||| | | | | || | || | | TCAACTACAA TACTCATCAT GTAGCAATAG CAATT-TCTT NATCATTAAC AATTACCGTC 116 AAACTCATCA ATGAGGACTC ACACCTCCCC ATCATACTCA TTTGGGAATT AGGTTCATTA 28252 || ||| |||||||||| | |||| | |||||||| |||||||||| | |||||||| AAGTTCACAC ATGAGGACTC AAGCCTCAAT ACCATACTCA TTTGGGAATT AAGTTCATTA 176 AATTAAGTAT ATT-AACATA TTTCAAGATT CATTCTCTTT ACTAATCCTG GTGCCGGAAC 28193 ||| ||||| ||| | || |||||||||| |||| ||||| || || ||| ||| || GATTGAGTAT ATTCATTATC TTTCAAGATT CATTATCTTT -CTTCCTCTT GTGTCGGTAC 235 GTGACACTCC GATCCTCATA TACTATCCTG GTACCAGAAT GTGGCAC-CC GATCCATATA 28134 |||||||||| | ||||| | |||||||| || || ||| ||||||| || ||||| ||| GTGACACTCC GCTCCTCTAT TTCTATCCTG GTGCCGGAAC GTGGCACTCC GATCCTCATA 295 CTATCCTGGT GTCGGAACGT GACACTCCGA TCCTCATAAA CTATCCTGGT ACCGGAACGT 28074 | | |||||||||| |||||||||| TT........ .......... .......... ......CATT CTATCCTGGT ACCGGAACGT 321 GGCACCCGAT -C-CATATAC TATCCTGGTG TCGGAACGTG ACAC-CCGAT CCATATACTA 28017 |||||||||| | ||||| | |||||||||| ||||||||| |||| ||||| || ||| | GGCACCCGAT CCTCATATTC TATCCTGGTG TCGGAACGTA ACACTCCGAT CCTCATATT. 380 TCCTGGTGTC GGAACTTGAC ACTCCGATCC TCACATACTA TCCTGGTACC GGAACGTGGC 27957 ||| ||| |||||||||| |||||||||| .......... .......... .......... ...CATTCTA TCCTGGTACC GGAACGTGGC 407 ACCCGAT-C- CATATACTAT TCTGGTGTCG GAACGTGACA CTCCGATCCT CATATACTAT 27899 ||||||| | ||||| |||| ||||||||| |||||||||| |||||||||| ||||| |||| ACCCGATCCT CATATTCTAT CCTGGTGTCG GAACGTGACA CTCCGATCCT CATATTCTAT 467 CCTGGTACCG GAACGTGGCA C-CCGATCCC CTAATCTCAC TACTTTC 27853 |||||| || ||||||| || | ||||||| | || ||| | || || CCTGGTGTCG GAACGTGACA CTCCGATCCT CATAT-TCA- TTCTATC 512 hqPGS_C04HBa0077O05.1-_SGN-E349977- (28430 28132,28097 28018,27983 27853) ******************************************************************************** EST sequence 163 +strand 729 n (File: SGN-E550212+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAAAACTCG 721 GGGGGGGGC Predicted gene structure (within gDNA segment 28664 to 21980): Exon 1 27569 26959 ( 611 n); cDNA 2 608 ( 607 n); score: 0.850 Intron 1 26958 22634 (4325 n); Pd: 0.397 (s: 0.56), Pa: 0.319 (s: 0) Exon 2 22633 22617 ( 17 n); cDNA 609 625 ( 17 n); score: 0.706 PPA cDNA 699 716 MATCH C04HBa0077O05.1- SGN-E550212+ 0.850 628 0.861 C PGS_C04HBa0077O05.1-_SGN-E550212+ (27569 26959,22633 22617) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 417 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACA GGTCGTTACA ATAAATATTA GGTATA-ATA GATAAATTTA TCATTTTACC 26975 |||||||||| ||||||||| || || || || || ||| ||| | |||||| | CGACTAAACA GGTCGTTAC- ATTTATGTTC TTCCTACTTA AATATTATTA TTATTTTA-C 594 TGATCTTATT TCACATGTAT GTCATCTATT TTTAGGTGTG TATAAATAGA TATTTAAATT 26915 ||| |||| ||| -GAT-TTATA ACACTA.... .......... .......... .......... .......... 608 AAATTTGTAT AAAGTTGAAG TAGACACTGA ATTCTACGAG ACATAATACA AGTAAGAGAT 26855 .......... .......... .......... .......... .......... .......... 608 CTAGGACGCA AATTGTCATG TAAGATGACA CGCAAAAATG TGTGTATTTA TTTATTCAAC 26795 .......... .......... .......... .......... .......... .......... 608 GAATTTATAG AAATATAAGT ATCTACTCGT GCACACTCAA AAATAAAGAA TATAAATATA 26735 .......... .......... .......... .......... .......... .......... 608 AGTGATAAGA GCATATTTAT ATATTATGTC TAACTATTAA TTTGATGTCC GTTGATCACA 26675 .......... .......... .......... .......... .......... .......... 608 TAAAAATTGA ACCAAATGAA TCATTTCCTA CTTATTCTTA ATATACTTAA ATTAGTTATC 26615 .......... .......... .......... .......... .......... .......... 608 TTCCATTATA ACATATACAA TTCATTCATT ATTCGTAACT ATCCTTTGTA AATATAGGTG 26555 .......... .......... .......... .......... .......... .......... 608 CATCGTATGT TTAATATATG GATGAAATAT TAATGAAGAT GTATAAATTT TATACGAGAG 26495 .......... .......... .......... .......... .......... .......... 608 TTATACCATT AAAATTAAAA TTTATAATGC TTGGTATAAA ATTATACCAA GAAAAATGTT 26435 .......... .......... .......... .......... .......... .......... 608 TTGCATGAAT ATCATCTTAA ACAAAACAAC ACACAAATAT GCAATTCGAA TGTGCATAGA 26375 .......... .......... .......... .......... .......... .......... 608 ACCAAATATC CCATAAATTT AAGGTCAATG AGCTAGAGTT CACCCAGGCA AGCAGCCTTA 26315 .......... .......... .......... .......... .......... .......... 608 TTTCCCCCCC CAAATTTAGG CCTTATTTTT TTTCTTTAAG ATTAACATGT CTGAATTTGA 26255 .......... .......... .......... .......... .......... .......... 608 ATAAACATTT GAATAATTTT GTGTCTAAGT TTAAACATTA AATGATTAAT ATTATTTATT 26195 .......... .......... .......... .......... .......... .......... 608 TTTTATCATC TGAATATGAG TAATTATTTA TAATTAAACA TTATAAATAT ATAATTTAAA 26135 .......... .......... .......... .......... .......... .......... 608 ATAAGAAAGT AATTAACCAT CGTTTTTTTT TTTCTCAAAG CATATTTAAA AAGAGGAGGT 26075 .......... .......... .......... .......... .......... .......... 608 TGTTCGATTT TGTAACTACA CAATTAAGAA TAAAACGGTA CTTGCCGATG ATAAAATATC 26015 .......... .......... .......... .......... .......... .......... 608 TACTTTGAAT GCTCTTCTTT CAAAAATTAG TGTGTATAAT GAATTTTTTT TAAAAAAAAG 25955 .......... .......... .......... .......... .......... .......... 608 ATATATTTAC ATTAGATATG ATGCAGTTAA ACAGTTATTG AAACATGAGG TTATTTTCTT 25895 .......... .......... .......... .......... .......... .......... 608 AGAATGTGTA AGGTCCTAAA AGTTATTTGT AATCTTTTAA CTAAGGAATT TGACTTGAAA 25835 .......... .......... .......... .......... .......... .......... 608 ATGAATAAAT GGTCTTTACC TCGAAGGAGA TGAAACGGGA TGGTGCTAAA GCCCATTGAT 25775 .......... .......... .......... .......... .......... .......... 608 TGAGATAATA TGACACAAGG CCATATTTTT TGATGCAGAT AGTAGGGGCG ATTCAACTCT 25715 .......... .......... .......... .......... .......... .......... 608 AAAGCCACTA AAGTAATGAC TTTAGGCTTC CAAAATATAA CGCCTCAAAT TTATTTAATG 25655 .......... .......... .......... .......... .......... .......... 608 TTACAGATAT ACAAATATAA ATATACTTAT AATTATGTAT CTATAATTAG TATTAATTGA 25595 .......... .......... .......... .......... .......... .......... 608 AATTTTCTTA ATAGTTTCTA ATCATGGGCG AATCCACATG TAAAGGTGGG GTGTACGTCC 25535 .......... .......... .......... .......... .......... .......... 608 ACTCGTTAAC TTCGAAAAAT CATGTATAAA TATATATATA TTGAGAAACT GATAAGGAAA 25475 .......... .......... .......... .......... .......... .......... 608 AAAAATATAA TAAAAAATGC AACCTTAATG AACATTGAAC TGGTCTTGAT TTGCTGATAG 25415 .......... .......... .......... .......... .......... .......... 608 AAATAAGAAA ATACCTCCTT GCAGACCTAG ATTTCAATCC TGATCAATAA GTCACTATCC 25355 .......... .......... .......... .......... .......... .......... 608 TATTCAAATC TTGGCTTCGC CTATATTTTG TGTTAAATTT GAACACTAAG AGCCTGTTTG 25295 .......... .......... .......... .......... .......... .......... 608 GCTCAGCTTA AAAGCTGGTC AAACTGACTT AAAAGCTGGT TTTTGACTTA TTTAGTTGTT 25235 .......... .......... .......... .......... .......... .......... 608 TGGCAATACT CAAAATAACT TACTTTAAGT TAAAAAAAAC TTATTTTAAG CCAAAAGTTA 25175 .......... .......... .......... .......... .......... .......... 608 AAAACTGGGG TAGGGGTGTT TTTTTTTTTT AGCTTATAAG CTGTTTTAAG TTGACCACAT 25115 .......... .......... .......... .......... .......... .......... 608 TTTTATCTTT TTGCCATTAA TATTTTTATG CAATCTCCAA ATTACTCATA TAACTCTAAC 25055 .......... .......... .......... .......... .......... .......... 608 ATCTCTTTCT TCCATTTTTC CCTTTTCACG TTTGATATAA CAACTTCAGC ACTTTTATCC 24995 .......... .......... .......... .......... .......... .......... 608 AAACGCATAA CTGCTTATTT TAAAAATAAA TTTCAACACT TCTAAAAGTA ATTTTTTAAA 24935 .......... .......... .......... .......... .......... .......... 608 GCTGCTTTTA TTAAGCCCAT CCAAACGGAT CCTAAGTCCG TATTGTTGAT TTAACCAAGA 24875 .......... .......... .......... .......... .......... .......... 608 TTGTGCCACC CTCTTAATAC AACCAAAGAG AGAAAAAAGA TAACCTGGTC GGCCCAAAAG 24815 .......... .......... .......... .......... .......... .......... 608 TGACCAGACC AGGTCAATCA TTATACATAT ATTTTTGAAA TTTACTATTT TCTAAAAGTA 24755 .......... .......... .......... .......... .......... .......... 608 CAATATAATT AAAAAACGTA TACAATTTAT CAGTTGTTAT TTTCTTAATT TGTCTAATTC 24695 .......... .......... .......... .......... .......... .......... 608 TCTTTAATTT GAAAGGGCAA CTTTCACATA TAGGAAATAA AATATTTATA TTTGTATGCT 24635 .......... .......... .......... .......... .......... .......... 608 ATAGCAAATT TTGTATAATT GCGCTCCATA GCAAACATAA AACTGTATAA TTCGCTATAC 24575 .......... .......... .......... .......... .......... .......... 608 ATATACAAGT GTATAGTTCG CTGGCCTAAA TTGTATAATT CGCTGGCCTA TTTCGCTGCA 24515 .......... .......... .......... .......... .......... .......... 608 ATAGTATAAT TCGTTATCCT ATTTCACTGC AATTGTATAA TGCACGATTA TATAATTAAC 24455 .......... .......... .......... .......... .......... .......... 608 TGCCTATTTC GCTGCAATAT TAAGTGTATA GCAAGAAGAT ATATGTTTTT CTCTCGCTTT 24395 .......... .......... .......... .......... .......... .......... 608 ATACAAAAAC AGAAACACAA TATACACACT TCTGTTGTAT AAAGCTAGAG AAAATTGTAT 24335 .......... .......... .......... .......... .......... .......... 608 TTTACTGCAA TTGTATAATT CACAATTGTA TAATTCTTTG ACCTTTTTCT CTGCAATATT 24275 .......... .......... .......... .......... .......... .......... 608 TGAAGTAAAA TGTTTGTAAA TTGTATAATT AAGTGTATAA CACGAAGATA TAGATTTTTG 24215 .......... .......... .......... .......... .......... .......... 608 CATGTGTATA TACAATTTTC TCTCGCTTTA TACAAAACAG AAACATAATT ATACACTTCT 24155 .......... .......... .......... .......... .......... .......... 608 GTGTATAAAG CGAGAGAGGC GAGCGAGAAT GGAGAGTGGC GAGCGAGATT TCTGGGAGAG 24095 .......... .......... .......... .......... .......... .......... 608 AGGCGCTGGC AAATTTTAGC TAACGTTTGC TATGGAGCAC AATTAAATCA AACCCTAACT 24035 .......... .......... .......... .......... .......... .......... 608 ATTCCATTTA TTTTAGGTTG TTAGTTTGCT ATTATATACA ATTTTCCCAA TTTGAAATCA 23975 .......... .......... .......... .......... .......... .......... 608 ATAATGTTTG AGTATTGATT CTATAAGAAT ATCTTCAATT ATTTGGTATC TTCTTAGATA 23915 .......... .......... .......... .......... .......... .......... 608 TTTCAAGCTT AAACTAATTA AATTTATCGA ATAATTAAAT TTTAAAAGAC GTAATCTTAA 23855 .......... .......... .......... .......... .......... .......... 608 CTTTAAATGT GATCTAAAGT GTAACGATCA CTTCTTTCGA GTTTTTGGCC AAAATCATTT 23795 .......... .......... .......... .......... .......... .......... 608 TTAAACTATA CCTCAGACTC AAACTACATC CTTAAAGTAT CATTCTTACC ATGAAACATC 23735 .......... .......... .......... .......... .......... .......... 608 CTTAAAGTAT TTTAAAGTTA ATAATTTTCA TCCTTCTACT TGAATTTATC ATAAAACTAA 23675 .......... .......... .......... .......... .......... .......... 608 TTGATATATC CTACAAAATT TAAGTTGTCC CTTCCTAATT ATTATTCTTA GATATGCCAA 23615 .......... .......... .......... .......... .......... .......... 608 GAATATTATC CTGAACTTTT TCGTAATTGA CTTAAGAATT ATGTAAAATC TTTTAATTTG 23555 .......... .......... .......... .......... .......... .......... 608 ACCTTTTTTT TTTTTTTTCA TTTTTCATGT AATTTTAATT AAAAAATATT ATTAGTTTAG 23495 .......... .......... .......... .......... .......... .......... 608 ATATGTTTCT TCTTAATTGA ATATGCTAGA AACGACATTT GTTGGAGACT TCCGCTTCTA 23435 .......... .......... .......... .......... .......... .......... 608 ATAATGTAGA ATGAAACTCA AATACGATAC ATAATCAATA TTTAGTCACT TTAATATTAG 23375 .......... .......... .......... .......... .......... .......... 608 ATTGACCCAA AAATCTATTA ATTTAATTGG TTAAGAAAAA GGTAAAATAA TTAATCTCCA 23315 .......... .......... .......... .......... .......... .......... 608 ACTTTTTTTC GTTACGAAAA AGGCAAATCA TATACGCTCA CACCTTCCAA TCATTTTTAG 23255 .......... .......... .......... .......... .......... .......... 608 GTTCCATAAG CAACTGTGTT TGAGATTTTT TTATGTTTTT CAAGAACTTC TTATAGAAAG 23195 .......... .......... .......... .......... .......... .......... 608 TAATGAAATT ATTTTGTTGA AAGTCACGTT AACTGCTCAT GTTTTCGTAA GATCCATTAA 23135 .......... .......... .......... .......... .......... .......... 608 TGTTTGGACA TATCTAACAA AAGGATGAAA GTTGTTTACT TACAAATACT TAAAGGATGT 23075 .......... .......... .......... .......... .......... .......... 608 ATTTTGCTAA AAATGATACT TTACAGATGT AGTTTAAATT TGGGATATAG TTAAAGGATG 23015 .......... .......... .......... .......... .......... .......... 608 TTTTCTGTTA AAACTGATTC TTTAAAGATG TAGTATGAGT TTATAGTATA GTTGAAGGAT 22955 .......... .......... .......... .......... .......... .......... 608 GTTTTAGAAA TATTATACAA AATAAAAAAA ATAATACTCT ATTTGGCATA TACTCAATTA 22895 .......... .......... .......... .......... .......... .......... 608 GACGAAATCG TAACCCTATT ATTAAATACT TCTACAATAA TTTTGATAAA TATGTGCAAT 22835 .......... .......... .......... .......... .......... .......... 608 AACAGGGCTA ATTGAAAAAG TTTTTTAAAA AAACTATAAT GCGTAAGAAC TTATCTAAAC 22775 .......... .......... .......... .......... .......... .......... 608 ACTTGTAATA TTTATGTGAC ATACAATAAT TTATATATAT TTATTCATAT CTTACGAAAT 22715 .......... .......... .......... .......... .......... .......... 608 ATACAACAAA TATTATATTG TCAAATGAAG AAGAAAAAAT TAATTATCGA ATTACAATTA 22655 .......... .......... .......... .......... .......... .......... 608 ACTACTATGT ATTTTAAAAA GTTATGAAGA AAAATGTT 22617 ||| || | || || || .......... .......... .TTAGAAACA AAGATTTT 625 hqPGS_C04HBa0077O05.1-_SGN-E550212+ (27569 26959) ******************************************************************************** EST sequence 169 +strand 732 n (File: SGN-E550201+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCNA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAAAAAACT 721 CGAGGGGGGG CC Predicted gene structure (within gDNA segment 28664 to 23150): Exon 1 27569 26959 ( 611 n); cDNA 2 607 ( 606 n); score: 0.852 Intron 1 26958 26831 ( 128 n); Pd: 0.397 (s: 0.58), Pa: 0.000 (s: 0) Exon 2 26830 26816 ( 15 n); cDNA 608 622 ( 15 n); score: 0.667 Intron 2 26815 25581 (1235 n); Pd: 0.396 (s: 0), Pa: 0.905 (s: 0) Exon 3 25580 25562 ( 19 n); cDNA 623 642 ( 20 n); score: 0.553 PPA cDNA 699 718 MATCH C04HBa0077O05.1- SGN-E550201+ 0.852 645 0.881 C PGS_C04HBa0077O05.1-_SGN-E550201+ (27569 26959,26830 26816,25580 25562) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 417 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACA GGTCGTTACA ATAAATATTA GGTATA-ATA GATAAATTTA TCATTTTACC 26975 |||||||||| ||||||||| || || || || || ||| ||| | |||||| | CGACTAAACA GGTCGTTAC- ATTTATGTTC TTCCTACTTA AATATTATTA TTATTTTA-C 594 TGATCTTATT TCACATGTAT GTCATCTATT TTTAGGTGTG TATAAATAGA TATTTAAATT 26915 ||| |||| ||| | -GAT-TTATA ACAC-T.... .......... .......... .......... .......... 607 AAATTTGTAT AAAGTTGAAG TAGACACTGA ATTCTACGAG ACATAATACA AGTAAGAGAT 26855 .......... .......... .......... .......... .......... .......... 607 CTAGGACGCA AATTGTCATG TAAGATGACA CGCAAAAATG TGTGTATTTA TTTATTCAAC 26795 || | | |||| || .......... .......... ....ATTAGA AACAAAGAT. .......... .......... 622 GAATTTATAG AAATATAAGT ATCTACTCGT GCACACTCAA AAATAAAGAA TATAAATATA 26735 .......... .......... .......... .......... .......... .......... 622 AGTGATAAGA GCATATTTAT ATATTATGTC TAACTATTAA TTTGATGTCC GTTGATCACA 26675 .......... .......... .......... .......... .......... .......... 622 TAAAAATTGA ACCAAATGAA TCATTTCCTA CTTATTCTTA ATATACTTAA ATTAGTTATC 26615 .......... .......... .......... .......... .......... .......... 622 TTCCATTATA ACATATACAA TTCATTCATT ATTCGTAACT ATCCTTTGTA AATATAGGTG 26555 .......... .......... .......... .......... .......... .......... 622 CATCGTATGT TTAATATATG GATGAAATAT TAATGAAGAT GTATAAATTT TATACGAGAG 26495 .......... .......... .......... .......... .......... .......... 622 TTATACCATT AAAATTAAAA TTTATAATGC TTGGTATAAA ATTATACCAA GAAAAATGTT 26435 .......... .......... .......... .......... .......... .......... 622 TTGCATGAAT ATCATCTTAA ACAAAACAAC ACACAAATAT GCAATTCGAA TGTGCATAGA 26375 .......... .......... .......... .......... .......... .......... 622 ACCAAATATC CCATAAATTT AAGGTCAATG AGCTAGAGTT CACCCAGGCA AGCAGCCTTA 26315 .......... .......... .......... .......... .......... .......... 622 TTTCCCCCCC CAAATTTAGG CCTTATTTTT TTTCTTTAAG ATTAACATGT CTGAATTTGA 26255 .......... .......... .......... .......... .......... .......... 622 ATAAACATTT GAATAATTTT GTGTCTAAGT TTAAACATTA AATGATTAAT ATTATTTATT 26195 .......... .......... .......... .......... .......... .......... 622 TTTTATCATC TGAATATGAG TAATTATTTA TAATTAAACA TTATAAATAT ATAATTTAAA 26135 .......... .......... .......... .......... .......... .......... 622 ATAAGAAAGT AATTAACCAT CGTTTTTTTT TTTCTCAAAG CATATTTAAA AAGAGGAGGT 26075 .......... .......... .......... .......... .......... .......... 622 TGTTCGATTT TGTAACTACA CAATTAAGAA TAAAACGGTA CTTGCCGATG ATAAAATATC 26015 .......... .......... .......... .......... .......... .......... 622 TACTTTGAAT GCTCTTCTTT CAAAAATTAG TGTGTATAAT GAATTTTTTT TAAAAAAAAG 25955 .......... .......... .......... .......... .......... .......... 622 ATATATTTAC ATTAGATATG ATGCAGTTAA ACAGTTATTG AAACATGAGG TTATTTTCTT 25895 .......... .......... .......... .......... .......... .......... 622 AGAATGTGTA AGGTCCTAAA AGTTATTTGT AATCTTTTAA CTAAGGAATT TGACTTGAAA 25835 .......... .......... .......... .......... .......... .......... 622 ATGAATAAAT GGTCTTTACC TCGAAGGAGA TGAAACGGGA TGGTGCTAAA GCCCATTGAT 25775 .......... .......... .......... .......... .......... .......... 622 TGAGATAATA TGACACAAGG CCATATTTTT TGATGCAGAT AGTAGGGGCG ATTCAACTCT 25715 .......... .......... .......... .......... .......... .......... 622 AAAGCCACTA AAGTAATGAC TTTAGGCTTC CAAAATATAA CGCCTCAAAT TTATTTAATG 25655 .......... .......... .......... .......... .......... .......... 622 TTACAGATAT ACAAATATAA ATATACTTAT AATTATGTAT CTATAATTAG TATTAATTGA 25595 .......... .......... .......... .......... .......... .......... 622 AATTTTCTTA ATAGTTTCT- AATCATGGGC GAAT 25562 ||||| | |||| ||| .......... ....TTTCTC NACCATGAAT TAAT 642 hqPGS_C04HBa0077O05.1-_SGN-E550201+ (27569 26959) ******************************************************************************** EST sequence 249 +strand 711 n (File: SGN-E396056+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAA ATTTTCTCAC CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATAATAAAA ATTTACTCAT TTTTTCTTTG AGCTAATTCA TAAAAAAAAA A Predicted gene structure (within gDNA segment 28664 to 23360): Exon 1 27569 26959 ( 611 n); cDNA 2 607 ( 606 n); score: 0.852 Intron 1 26958 26831 ( 128 n); Pd: 0.397 (s: 0.58), Pa: 0.000 (s: 0) Exon 2 26830 26816 ( 15 n); cDNA 608 622 ( 15 n); score: 0.733 Intron 2 26815 25581 (1235 n); Pd: 0.396 (s: 0), Pa: 0.905 (s: 0) Exon 3 25580 25576 ( 5 n); cDNA 623 627 ( 5 n); score: 1.000 PPA cDNA 700 711 MATCH C04HBa0077O05.1- SGN-E396056+ 0.852 631 0.887 C PGS_C04HBa0077O05.1-_SGN-E396056+ (27569 26959,26830 26816,25580 25576) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 417 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACA GGTCGTTACA ATAAATATTA GGTATA-ATA GATAAATTTA TCATTTTACC 26975 |||||||||| ||||||||| || || || || || ||| ||| | |||||| | CGACTAAACA GGTCGTTAC- ATTTATGTTC TTCCTACTTA AATATTATTA TTATTTTA-C 594 TGATCTTATT TCACATGTAT GTCATCTATT TTTAGGTGTG TATAAATAGA TATTTAAATT 26915 ||| |||| ||| | -GAT-TTATA ACAC-T.... .......... .......... .......... .......... 607 AAATTTGTAT AAAGTTGAAG TAGACACTGA ATTCTACGAG ACATAATACA AGTAAGAGAT 26855 .......... .......... .......... .......... .......... .......... 607 CTAGGACGCA AATTGTCATG TAAGATGACA CGCAAAAATG TGTGTATTTA TTTATTCAAC 26795 || | | ||||||| .......... .......... ....ATTAGA AACAAAAAT. .......... .......... 622 GAATTTATAG AAATATAAGT ATCTACTCGT GCACACTCAA AAATAAAGAA TATAAATATA 26735 .......... .......... .......... .......... .......... .......... 622 AGTGATAAGA GCATATTTAT ATATTATGTC TAACTATTAA TTTGATGTCC GTTGATCACA 26675 .......... .......... .......... .......... .......... .......... 622 TAAAAATTGA ACCAAATGAA TCATTTCCTA CTTATTCTTA ATATACTTAA ATTAGTTATC 26615 .......... .......... .......... .......... .......... .......... 622 TTCCATTATA ACATATACAA TTCATTCATT ATTCGTAACT ATCCTTTGTA AATATAGGTG 26555 .......... .......... .......... .......... .......... .......... 622 CATCGTATGT TTAATATATG GATGAAATAT TAATGAAGAT GTATAAATTT TATACGAGAG 26495 .......... .......... .......... .......... .......... .......... 622 TTATACCATT AAAATTAAAA TTTATAATGC TTGGTATAAA ATTATACCAA GAAAAATGTT 26435 .......... .......... .......... .......... .......... .......... 622 TTGCATGAAT ATCATCTTAA ACAAAACAAC ACACAAATAT GCAATTCGAA TGTGCATAGA 26375 .......... .......... .......... .......... .......... .......... 622 ACCAAATATC CCATAAATTT AAGGTCAATG AGCTAGAGTT CACCCAGGCA AGCAGCCTTA 26315 .......... .......... .......... .......... .......... .......... 622 TTTCCCCCCC CAAATTTAGG CCTTATTTTT TTTCTTTAAG ATTAACATGT CTGAATTTGA 26255 .......... .......... .......... .......... .......... .......... 622 ATAAACATTT GAATAATTTT GTGTCTAAGT TTAAACATTA AATGATTAAT ATTATTTATT 26195 .......... .......... .......... .......... .......... .......... 622 TTTTATCATC TGAATATGAG TAATTATTTA TAATTAAACA TTATAAATAT ATAATTTAAA 26135 .......... .......... .......... .......... .......... .......... 622 ATAAGAAAGT AATTAACCAT CGTTTTTTTT TTTCTCAAAG CATATTTAAA AAGAGGAGGT 26075 .......... .......... .......... .......... .......... .......... 622 TGTTCGATTT TGTAACTACA CAATTAAGAA TAAAACGGTA CTTGCCGATG ATAAAATATC 26015 .......... .......... .......... .......... .......... .......... 622 TACTTTGAAT GCTCTTCTTT CAAAAATTAG TGTGTATAAT GAATTTTTTT TAAAAAAAAG 25955 .......... .......... .......... .......... .......... .......... 622 ATATATTTAC ATTAGATATG ATGCAGTTAA ACAGTTATTG AAACATGAGG TTATTTTCTT 25895 .......... .......... .......... .......... .......... .......... 622 AGAATGTGTA AGGTCCTAAA AGTTATTTGT AATCTTTTAA CTAAGGAATT TGACTTGAAA 25835 .......... .......... .......... .......... .......... .......... 622 ATGAATAAAT GGTCTTTACC TCGAAGGAGA TGAAACGGGA TGGTGCTAAA GCCCATTGAT 25775 .......... .......... .......... .......... .......... .......... 622 TGAGATAATA TGACACAAGG CCATATTTTT TGATGCAGAT AGTAGGGGCG ATTCAACTCT 25715 .......... .......... .......... .......... .......... .......... 622 AAAGCCACTA AAGTAATGAC TTTAGGCTTC CAAAATATAA CGCCTCAAAT TTATTTAATG 25655 .......... .......... .......... .......... .......... .......... 622 TTACAGATAT ACAAATATAA ATATACTTAT AATTATGTAT CTATAATTAG TATTAATTGA 25595 .......... .......... .......... .......... .......... .......... 622 AATTTTCTTA ATAGTTTCT 25576 ||||| .......... ....TTTCT 627 hqPGS_C04HBa0077O05.1-_SGN-E396056+ (27569 26959) ******************************************************************************** EST sequence 193 +strand 720 n (File: SGN-E389834+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTA CGTCGACTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAGAACGAC 541 TAAACAGGAC GTTACATTTA TGATCGTCCT ACTTAAATAT CATTATTATT TTACGATTTA 601 TAACACTATT AGAAACGAAG ATTTTCTCGA CCATGAATTA ATGAAAAAAT ATGCCATGAA 661 ATATAAAAAT TTACTCGTTC TTCATTGAGC TATTCGTGAA AAAAAAAAAA AAATCGAGGG Predicted gene structure (within gDNA segment 28664 to 23270): Exon 1 27569 26961 ( 609 n); cDNA 2 606 ( 605 n); score: 0.846 PPA cDNA 699 714 MATCH C04HBa0077O05.1- SGN-E389834+ 0.846 609 0.846 C PGS_C04HBa0077O05.1-_SGN-E389834+ (27569 26961) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 417 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| | ||||| |||| || | ||||||| || |||| |||| | |||| || TCCGTCGTGG GTTACGTCGA CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAGAA 536 CGACTAAACA GGTCGTTACA ATAAATATTA GGTATA-ATA GATAAATTTA TCATTTTACC 26975 |||||||||| || |||||| || || | | || || ||| ||| | |||||| | CGACTAAACA GGACGTTAC- ATTTATGATC GTCCTACTTA AATATCATTA TTATTTTA-C 594 TGATCTTATT TCAC 26961 ||| |||| ||| -GAT-TTATA ACAC 606 hqPGS_C04HBa0077O05.1-_SGN-E389834+ (27569 26961) ******************************************************************************** EST sequence 237 +strand 649 n (File: SGN-E374999+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CCAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTTCAC CCTGAATTAA TGAAAAAAT Predicted gene structure (within gDNA segment 28654 to 23970): Exon 1 27569 27005 ( 565 n); cDNA 1 563 ( 563 n); score: 0.873 MATCH C04HBa0077O05.1- SGN-E374999+ 0.873 565 0.871 C PGS_C04HBa0077O05.1-_SGN-E374999+ (27569 27005) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 59 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 178 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 238 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 297 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 357 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 416 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 475 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||| ||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCCAAA 535 CGACTAAACA GGTCGTTACA ATAAATATT 27005 |||||||||| ||||||||| || || || CGACTAAACA GGTCGTTAC- ATTTATGTT 563 hqPGS_C04HBa0077O05.1-_SGN-E374999+ (27569 27005) ******************************************************************************** EST sequence 51 -strand 542 n (File: SGN-E252199-) 1 CGACCCAGCC TGGGATTACG CAGTCTGTGA CGGTCCGTCC TGCACGTCCG TCACAGAGTT 61 CAGAGACTAG ATTTTTACCA AGGGTCTGTG ACGGCCCATC ACGCCTGTGA CGGTCCGTCC 121 TGCCATTCCG TCACGAAGTT CAGAGAGTCG ATTTCAGTAC CCAAATTTCA GAATTCTAAG 181 TGTTTTGGAA CGAGACCCCC TCGACGGTCC GTCGTGGGAT CCGTCGTCTC AGTCAGTTTT 241 TCCAGAAATA AAATCTGTTA CTCAAAACGA CTAAACAGGT CGTTACAATA GATACCAATT 301 TACCCATCGT TCGTCCCCGA ACGATCACAA GAAGAAAAAC AAGGGCGAAA AGGAGTACCT 361 GAATCTGTAA ACAGGTATGG GTATCTTTCT CGCATATCAA CTTCCTTCTC CCAAGTGGAT 421 TCTTCAACTG GTCGATTCTT CCATTGAACT TTGATAGATG CAATCTCCCT TGACCTCAAT 481 TTGCGGACTT CTCTATCTAA AATGGCAACA GGCTCCTCCT CATAAGACAA ATTCTCATCA 541 AG Predicted gene structure (within gDNA segment 28811 to 23891): Exon 1 27321 27007 ( 315 n); cDNA 3 294 ( 292 n); score: 0.816 MATCH C04HBa0077O05.1- SGN-E252199- 0.816 315 0.581 C PGS_C04HBa0077O05.1-_SGN-E252199- (27321 27007) Alignment (genomic DNA sequence = upper lines): ACGCAGCCTG TGACGGCCTG TCATGCCTGC GACGGTCCGT CCTGCTGCTC CGTCACAGAG 27262 || ||||||| || | | || | ||| |||||||||| ||||| || |||||||||| ACCCAGCCTG GGATTAC--G -CA-GTCTGT GACGGTCCGT CCTGCACGTC CGTCACAGAG 58 TTCAGAGACT CAATTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT GACGGTCCGT 27202 |||||||||| ||| ||| ||||| |||||| || |||||||||| |||||||||| TTCAGAGACT AGATTTTTAC CAAGGGTCTG TGACGGCCCA TCACGCCTGT GACGGTCCGT 118 CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGATTTCAGT ACCCATTTTT CAGAATTTCA 27142 |||||||||| ||| |||||| || ||||||| |||||||||| ||||| ||| ||||| ||| CCTGCCATTC CGTCACGAAG TTCAGAGAGT CGATTTCAGT ACCCAAATTT CAGAA-TTCT 177 AAGTGTTTTG AAACGAGACC CCCTCGACGG TCCGTCGTGC CCATGACGGT CCGTCGTGGA 27082 |||||||||| ||||||||| |||||||||| ||||||||| | | | ||||| | AAGTGTTTTG GAACGAGACC CCCTCGACGG TCCGTCGTG- ----G--GAT CCGTC---G- 226 ATCCGTCGTC TCAGCCAGTT TTCCAGAAAT AACATCTCTT GCTCAAAACG ACTAAACAGG 27022 | | || |||| || |||||||||| || |||| || ||||||||| |||||||||| -T-C-TC-AG TCAG---TTT TTCCAGAAAT AAAATCTGTT ACTCAAAACG ACTAAACAGG 279 TCGTTACAAT AAATA 27007 |||||||||| | ||| TCGTTACAAT AGATA 294 hqPGS_C04HBa0077O05.1-_SGN-E252199- (27321 27007) ******************************************************************************** EST sequence 211 +strand 558 n (File: SGN-E231589+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA TAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTT Predicted gene structure (within gDNA segment 28654 to 24880): Exon 1 27569 27014 ( 556 n); cDNA 1 555 ( 555 n); score: 0.878 MATCH C04HBa0077O05.1- SGN-E231589+ 0.878 556 0.996 C PGS_C04HBa0077O05.1-_SGN-E231589+ (27569 27014) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 59 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 178 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 238 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 297 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || ||| |||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCATAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 357 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 416 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 475 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 535 CGACTAAACA GGTCGTTACA 27014 |||||||||| |||||||||| CGACTAAACA GGTCGTTACA 555 hqPGS_C04HBa0077O05.1-_SGN-E231589+ (27569 27014) ******************************************************************************** EST sequence 247 +strand 618 n (File: SGN-E396054+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAA Predicted gene structure (within gDNA segment 28664 to 24290): Exon 1 27569 27023 ( 547 n); cDNA 2 547 ( 546 n); score: 0.878 MATCH C04HBa0077O05.1- SGN-E396054+ 0.878 547 0.885 C PGS_C04HBa0077O05.1-_SGN-E396054+ (27569 27023) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 417 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 536 CGACTAAACA G 27023 |||||||||| | CGACTAAACA G 547 hqPGS_C04HBa0077O05.1-_SGN-E396054+ (27569 27023) ******************************************************************************** EST sequence 251 +strand 610 n (File: SGN-E396058+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTGTTT CCAAAAATAA AATCTGCTAC TCACAACGAC 541 TAAACAGGTC GTTACATTTA GGTTCTTCAT AGTTAACTAT TATTATTATT TTACGATTTA 601 TAACACTATT Predicted gene structure (within gDNA segment 28664 to 24370): Exon 1 27569 27023 ( 547 n); cDNA 2 547 ( 546 n); score: 0.876 MATCH C04HBa0077O05.1- SGN-E396058+ 0.876 547 0.897 C PGS_C04HBa0077O05.1-_SGN-E396058+ (27569 27023) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 417 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 476 TCCGTCGTGG AATCCGTCGT CTCAGCCAGT -TTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || || |||||| || |||| |||| | |||| || TCCGTCGTGG GTTCCGTCGT CTCAACCTGT GTTTCCAAAA ATAAAATCTG CTACTCACAA 536 CGACTAAACA G 27023 |||||||||| | CGACTAAACA G 547 hqPGS_C04HBa0077O05.1-_SGN-E396058+ (27569 27023) ******************************************************************************** EST sequence 299 +strand 545 n (File: SGN-E241959+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACA Predicted gene structure (within gDNA segment 28654 to 25010): Exon 1 27569 27024 ( 546 n); cDNA 1 545 ( 545 n); score: 0.877 MATCH C04HBa0077O05.1- SGN-E241959+ 0.877 546 1.002 C PGS_C04HBa0077O05.1-_SGN-E241959+ (27569 27024) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 59 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 178 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 238 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 297 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 357 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 416 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGACGG 27093 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | |||||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGACGG 475 TCCGTCGTGG AATCCGTCGT CTCAGCCAG- TTTTCCAGAA ATAACATCTC TTGCTCAAAA 27034 |||||||||| |||||||| |||| || | ||||||| || |||| |||| | ||||||| TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA 535 CGACTAAACA 27024 |||||||||| CGACTAAACA 545 hqPGS_C04HBa0077O05.1-_SGN-E241959+ (27569 27024) ******************************************************************************** EST sequence 148 -strand 660 n (File: SGN-E349296-) 1 AATATTATCA ATACATATTA TTCGCTATTA AGAGCTTACT ACGAATATCG TAAGAGAAAC 61 CATAACCTAC CTCCACCGAA GATTCGTGAT CAAGCAAGTG ATTTCCCAAG CTTTGTGTTT 121 TTTCCTCTCG TTCGATCCTC TTTCTCGTTC GACTTTCTCT CTCTTTCTCT TGTTCTTTCT 181 ATTTTCTTTA TTCAAACCCT CTTTCTTTTA CCCTAATTAG TATATAATTA AGAATAAAAT 241 ATGGCAATAA TAACCCACTA ATTAACTTAA GGTTACCTCT TTTAACCCCC AAGTAATTAG 301 ACTTATTAAC ATTAACCCAC TAACTTTATA ATTAAAGCAG GAATAGTCAA AAACGTCCCT 361 TAAAACAATT GAGGAATTCC GACTCAGACT GGGATTTACG CAGCCTGTGA CAGCCCGTTG 421 TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC GCAAGGTTCA GAGACTGGAT TTTCACTGAA 481 GACTCTGTGA TGGTCCATCA CGCCTGTGAC GGTCCGTCTT GCCATTCCGT TACGAAGTTC 541 AGAGAGTCGA TTTTCAGTAC CCAATTTCAG ATTTCCTAAG TGTTTTGAAA TGAGACCCTG 601 CGACGGTCCG TCGTGCCCAT GATGGTCCGT CGTGGGGTCC GTCATTTCTG CCAGTTTTTC Predicted gene structure (within gDNA segment 29847 to 25370): Exon 1 27577 27060 ( 518 n); cDNA 136 658 ( 523 n); score: 0.867 MATCH C04HBa0077O05.1- SGN-E349296- 0.867 518 0.785 C PGS_C04HBa0077O05.1-_SGN-E349296- (27577 27060) Alignment (genomic DNA sequence = upper lines): TCCTC-TTCT CGTTCGA--T CCTCTCTCTC TCT-TTGTTC TTTCTATTTT CTTTATTCAA 27522 ||||| |||| ||||||| | |||||||| ||| |||||| |||||||||| |||||||||| TCCTCTTTCT CGTTCGACTT TCTCTCTCTT TCTCTTGTTC TTTCTATTTT CTTTATTCAA 195 ACCCTCTTTC TTTTACCCTA ATTAGCATAT AATTAAGAAT AAAAGATGGC AATAATAACC 27462 |||||||||| |||||||||| ||||| |||| |||||||||| |||| ||||| |||||||||| ACCCTCTTTC TTTTACCCTA ATTAGTATAT AATTAAGAAT AAAATATGGC AATAATAACC 255 CACTAATTTA CTCAAGGTTA CCTCTTTTAA CCCCCAAGTA ATTAGACTTA TTAACATTAA 27402 |||||||| | || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTAATTAA CTTAAGGTTA CCTCTTTTAA CCCCCAAGTA ATTAGACTTA TTAACATTAA 315 CCCACTAACT TTATAATTAA AACAGGAATA GTCAAAAACT TCCTTTAAAA C-ATTAAAGA 27343 |||||||||| |||||||||| | |||||||| ||||||||| ||| |||||| | ||| | || CCCACTAACT TTATAATTAA AGCAGGAATA GTCAAAAACG TCCCTTAAAA CAATTGAGGA 375 AATCCGACTC AGCCTGGGA- TTACGCAGCC TGTGACGGCC TGTCATGCCT GCGACGGTCC 27284 | |||||||| || |||||| |||||||||| |||||| ||| || ||||| |||||||||| ATTCCGACTC AGACTGGGAT TTACGCAGCC TGTGACAGCC CGTTGTGCCT GCGACGGTCC 435 GTCCTGCTGC TCCGTCACAG AGTTCAGAGA CT-CAATTCC CTTAAAGAGT CTGTGACGGT 27225 ||||||| | | |||| || ||||||||| || | || | | |||| | |||||| ||| GTCCTGCAGG T-CGTCGCAA GGTTCAGAGA CTGGATTTTC ACTGAAGACT CTGTGATGGT 494 CCGTCACGCC TGTGACGGTC CGTCCTGCCA TTCCGTTACG AAGTTTAGAG AGTCGA-TTT 27166 || ||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||| ||| CCATCACGCC TGTGACGGTC CGTCTTGCCA TTCCGTTACG AAGTTCAGAG AGTCGATTTT 554 CAGTACCCAT TTTTCAGAAT TTCAAAGTGT TTTGAAACGA GACCCCCTCG ACGGTCCGTC 27106 ||||||||| ||||||| | | | |||||| ||||||| || || ||| || |||||||||| CAGTACCCA- ATTTCAGATT TCCTAAGTGT TTTGAAATGA GA-CCCTGCG ACGGTCCGTC 612 GTGCCCATGA CGGTCCGTCG TGGAATCCGT CGTCTCAGCC AGTTTT 27060 |||||||||| ||||||||| ||| ||||| | | || ||| |||||| GTGCCCATGA TGGTCCGTCG TGGGGTCCGT CATTTCTGCC AGTTTT 658 hqPGS_C04HBa0077O05.1-_SGN-E349296- (27577 27060) ******************************************************************************** EST sequence 260 +strand 472 n (File: SGN-E236652+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GA Predicted gene structure (within gDNA segment 28654 to 25740): Exon 1 27569 27096 ( 474 n); cDNA 1 472 ( 472 n); score: 0.883 MATCH C04HBa0077O05.1- SGN-E236652+ 0.883 474 1.004 C PGS_C04HBa0077O05.1-_SGN-E236652+ (27569 27096) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 59 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 178 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 238 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 297 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 357 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || |||||| || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT 416 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG GTCCGTCGTG CCCATGA 27096 |||||||||| ||||||||| ||||||||| | |||||||| |||| ||||| | ||||| TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG GTCCATCGTG CTCATGA 472 hqPGS_C04HBa0077O05.1-_SGN-E236652+ (27569 27096) ******************************************************************************** EST sequence 256 +strand 454 n (File: SGN-E396070+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCGGGGGGGG 421 GAGTTTCTAA TTGTTTTGAA ACTAGACTCC TCGA Predicted gene structure (within gDNA segment 28664 to 25930): Exon 1 27569 27115 ( 455 n); cDNA 2 454 ( 453 n); score: 0.860 MATCH C04HBa0077O05.1- SGN-E396070+ 0.860 455 1.002 C PGS_C04HBa0077O05.1-_SGN-E396070+ (27569 27115) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 27510 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 27450 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 27390 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 27331 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 27271 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCCTT AAAGAGTCTG TGACGGTCCG TCACGCCTGT 27212 ||| || || |||||||||| || |||| |||||||||| |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCATTC CGTTACGAAG TTTAGAGAGT CGA-TTTCAG TACCCATTTT 27153 |||||||||| | |||||||| |||||||||| || ||||||| ||| ||| || || || GACGGTCCGT CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TA-CCGGGGG 417 TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGA 27115 || |||| || |||||| ||||| ||| | |||||| GGGGAGTTTC TAATTGTTTT GAAACTAGA- CTCCTCGA 454 hqPGS_C04HBa0077O05.1-_SGN-E396070+ (27569 27115) ******************************************************************************** EST sequence 127 -strand 548 n (File: SGN-E356257-) 1 GTTAACTAGA AAATTAAAGT GATAGAGTCA AATAATGTAA CGACCCGTTT AGTCGTTTTG 61 AGCAGCAGAC TTTATTTCTG GAAAAACTGG CAGAAGCGAC GGACCCCACG ACGGACCGTC 121 ATGGGCACGA CGGACCATCG CAGGGTCTCG TTTCAAAACC CTCTTTCTTT TACCCCAAAT 181 TAACATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT TAGGGTTACC 241 TCTTTTAACC CCAAGAATTT GAGTTATTAA TATAAACCCA CGAAATCTAT AATTAAGGAA 301 AGAATAGTCC AAAAACGTCC CTTAAAACGT GTAAGGAAAT CCGATTCTGC CTGGGATTTG 361 CGCAACCTGT GACGGGCCGT CGTGACTGTG ACGGTCCGTC CTGCAGGTCG TCGCAAGGGT 421 CAGAGAGTCA ATTTCCACTG AACAATCTAT GACGGTCCGT CACGCCTGTG ATGGTCCGTC 481 CTGTCATTCC GTCACGAAGT TCAGAGAGTC GATTTTCAGT ACCCAATTTC AGATTTTCTA 541 AGTGTTTT Predicted gene structure (within gDNA segment 29683 to 23868): Exon 1 27523 27133 ( 391 n); cDNA 156 548 ( 393 n); score: 0.824 MATCH C04HBa0077O05.1- SGN-E356257- 0.824 391 0.714 C PGS_C04HBa0077O05.1-_SGN-E356257- (27523 27133) Alignment (genomic DNA sequence = upper lines): AAACCCTCTT TCTTTTACCC TAA-TTAGCA TATAATTAAG AATAAAAGAT GGCAATAATA 27465 |||||||||| |||||||||| || ||| || |||||||||| |||||||||| |||||||||| AAACCCTCTT TCTTTTACCC CAAATTAACA TATAATTAAG AATAAAAGAT GGCAATAATA 215 ACCCACTAAT TTACTCAAGG TTACCTCTTT TAACCCCCAA GTAATTAGAC TTATTAACAT 27405 ||||||||| | ||| | || |||||||||| ||| |||||| | |||| || ||||||| || CCCCACTAAT TAACTTAGGG TTACCTCTTT TAA-CCCCAA G-AATTTGAG TTATTAATAT 273 TAACCCACTA ACTTTATAAT TAAAACAGGA ATAGT-CAAA AACTTCCTTT AAAACAT-TA 27347 ||||||| | | | |||||| ||| | || ||||| |||| ||| ||| || ||||| | || AAACCCACGA AATCTATAAT TAAGGAAAGA ATAGTCCAAA AACGTCCCTT AAAACGTGTA 333 AAGAAATCCG ACTCAGCCTG GGA-TTACGC AGCCTGTGAC GGCCTGTCAT GCCTGCGACG 27288 | |||||||| | || ||||| ||| || ||| | |||||||| || | ||| | | ||| |||| AGGAAATCCG ATTCTGCCTG GGATTTGCGC AACCTGTGAC GGGCCGTCGT GACTGTGACG 393 GTCCGTCCTG CTGCTCCGTC ACAGAGTTCA GAGACTCAA- TTCCCTTAAA GAGTCTGTGA 27229 |||||||||| | | | |||| || | ||| |||| |||| |||| | || | ||| ||| GTCCGTCCTG CAGGT-CGTC GCAAGGGTCA GAGAGTCAAT TTCCACTGAA CAATCTATGA 452 CGGTCCGTCA CGCCTGTGAC GGTCCGTCCT GCCATTCCGT TACGAAGTTT AGAGAGTCGA 27169 |||||||||| ||||||||| |||||||||| | |||||||| |||||||| |||||||||| CGGTCCGTCA CGCCTGTGAT GGTCCGTCCT GTCATTCCGT CACGAAGTTC AGAGAGTCGA 512 -TTTCAGTAC CCATTTTTCA GAATTTCAAA GTGTTTT 27133 ||||||||| ||| ||||| || |||| || ||||||| TTTTCAGTAC CCA-ATTTCA GATTTTCTAA GTGTTTT 548 hqPGS_C04HBa0077O05.1-_SGN-E356257- (27523 27133) ******************************************************************************** EST sequence 243 +strand 356 n (File: SGN-E396037+) 1 GGGCAGCGGA GCCTCATGTT TTGTTTACCA CTATGCCGCA TCTATATGAT TAACATGATG 61 ATGATGATGA TGACTACCAC GATTCACGAG AAGAAGATGA GGATGAATGG GGTATTGAGA 121 TGGATGTTTT ACTCGAGGTT ACCTCTTTTA ACCCCCAGGT AATTAGACTT ATTAACATAA 181 ACCCACTAAC TTTATAATTA AAGTAGGAAT AGTCCAAAAC GTCCCTTAAA ACGTGTAAAG 241 AAATCCGACC CAGACTGGGA TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC 301 GTCCTGCAGG TCTTCTCTAG GTTCAGAGAC TCTCTTTCCA CCAAAGAGTC TGTGAC Predicted gene structure (within gDNA segment 29997 to 25231): Exon 1 29386 29380 ( 7 n); cDNA 108 114 ( 7 n); score: 0.857 Intron 1 29379 29317 ( 63 n); Pd: 0.449 (s: 0), Pa: 0.885 (s: 0) Exon 2 29316 29306 ( 11 n); cDNA 115 124 ( 10 n); score: 0.636 Intron 2 29305 27459 (1847 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.92) Exon 3 27458 27228 ( 231 n); cDNA 125 356 ( 232 n); score: 0.848 MATCH C04HBa0077O05.1- SGN-E396037+ 0.848 249 0.699 C PGS_C04HBa0077O05.1-_SGN-E396037+ (29386 29380,29316 29306,27458 27228) Alignment (genomic DNA sequence = upper lines): TGGGGTGGCA ATTCCTCATT CTGTACTTGC TCATTTTCCC TTTCCTCACC CTCTCTTACC 29327 |||||| TGGGGTA... .......... .......... .......... .......... .......... 114 ACTTCCTCAG TTGGTGGAGG AGTCACCGCC CTAGTACCAG ATGGGCTAGG TGCTCGTCCT 29267 || | | || | .......... TT-GAGATGG A......... .......... .......... .......... 124 CTTCTCCTAG AGGACGTCCT CCCACGATCT CTTCCGCGGC CTCTTGCCAC TGCTCCTCTT 29207 .......... .......... .......... .......... .......... .......... 124 CGAGCTACAG TCTCAGTGGC TGGCTCAGAT GCATCTTGTC TTGCTGATGT TGATGTTGGC 29147 .......... .......... .......... .......... .......... .......... 124 GCGGTCGTTG CTCTAGTTCT AACCATCTGC GAAATAGAGT GAAGATGGTC AGATACCAAT 29087 .......... .......... .......... .......... .......... .......... 124 TTGTATCACC TAGATACCAA TTGGATCCAA GTAATAACAC AAAAGAAAGA AAGAAAGAAT 29027 .......... .......... .......... .......... .......... .......... 124 GGAATTTTCC TAAAGTCTTA TAGCCTCTCA AAGAAAAGTA AAGGCGTCCC CCTACCGTTC 28967 .......... .......... .......... .......... .......... .......... 124 CTTAAGACTC TACTAGACTC GTTCTTGTGT GATGAGACCA ACGAACCTAA TGCTCTGATA 28907 .......... .......... .......... .......... .......... .......... 124 CCAAGTTTGT CACGACCCAA ATCGGGTCGC GACTGGCACC CACACTTACC CTCCTATGTG 28847 .......... .......... .......... .......... .......... .......... 124 AGCGAACCAA CCAATCTAAA CCTTAACATT TCAATATAAT ATCAACAGAA AGTAATGCGG 28787 .......... .......... .......... .......... .......... .......... 124 AAGACTTAAA CTCATTAATA AAAACCAATT CAATAACTTC TAAAAACTCA ACAACTATTA 28727 .......... .......... .......... .......... .......... .......... 124 TTATCCCCAA AATCTGGAAG TCATTATCAC AAGAACATCT ACTTCAAATT ACTAAATCTA 28667 .......... .......... .......... .......... .......... .......... 124 AGAGTATCTA AGAAGTTAAA ATACATAAAC AGCTAGTCCA TGCCGGAACT TCAAGGCATC 28607 .......... .......... .......... .......... .......... .......... 124 AAGACATAAA GAAGAAGATC CAGTCCAAGC TAGAAGCTTT AGCTCACCCT GAAATCTAGT 28547 .......... .......... .......... .......... .......... .......... 124 GTGATGAAGA CTGGCTAGAG TTGCGGTTGG ATTGAAGACG ACGATACGTT TGCTGCACTC 28487 .......... .......... .......... .......... .......... .......... 124 CACAATGAAC AAAAAGAAAA CATACAAGTA GGGGTCAGTA GAAAACACGA GTACTGAGTA 28427 .......... .......... .......... .......... .......... .......... 124 GATATCATCG GCCAACTCAA AATAGAAAAC AGTATATATC AGATAATATC ATAAAATCAA 28367 .......... .......... .......... .......... .......... .......... 124 CTACAGTACT TAACATGCAA CATTTACAAT TACCATAACC CTTGGTCATA ACACCAAACT 28307 .......... .......... .......... .......... .......... .......... 124 CATCAATGAG GACTCACACC TCCCCATCAT ACTCATTTGG GAATTAGGTT CATTAAATTA 28247 .......... .......... .......... .......... .......... .......... 124 AGTATATTAA CATATTTCAA GATTCATTCT CTTTACTAAT CCTGGTGCCG GAACGTGACA 28187 .......... .......... .......... .......... .......... .......... 124 CTCCGATCCT CATATACTAT CCTGGTACCA GAATGTGGCA CCCGATCCAT ATACTATCCT 28127 .......... .......... .......... .......... .......... .......... 124 GGTGTCGGAA CGTGACACTC CGATCCTCAT AAACTATCCT GGTACCGGAA CGTGGCACCC 28067 .......... .......... .......... .......... .......... .......... 124 GATCCATATA CTATCCTGGT GTCGGAACGT GACACCCGAT CCATATACTA TCCTGGTGTC 28007 .......... .......... .......... .......... .......... .......... 124 GGAACTTGAC ACTCCGATCC TCACATACTA TCCTGGTACC GGAACGTGGC ACCCGATCCA 27947 .......... .......... .......... .......... .......... .......... 124 TATACTATTC TGGTGTCGGA ACGTGACACT CCGATCCTCA TATACTATCC TGGTACCGGA 27887 .......... .......... .......... .......... .......... .......... 124 ACGTGGCACC CGATCCCCTA ATCTCACTAC TTTCGTTCAT CAAGCCTTCT TTTATACCAA 27827 .......... .......... .......... .......... .......... .......... 124 GGCATCATCA TTAACAAAGT AGATTAGGGC TTTTCAAGAT TTAAGATTCA AGAGCTTCAT 27767 .......... .......... .......... .......... .......... .......... 124 CATGCTTATT CATCACAATT ATATAATCAC ATCATGTAAG GATACAATTA ATCACATAGA 27707 .......... .......... .......... .......... .......... .......... 124 AGGGTTTACA ACACTACCCA ATACATATCA TTCGCTATTA AGAGTTTACT ACGAATAGTA 27647 .......... .......... .......... .......... .......... .......... 124 TAAAAACCAT AACCTACCTC CACCGAAGAT TAGTGATCAA GCAAGCAAAT TCCCCAAAGC 27587 .......... .......... .......... .......... .......... .......... 124 TTTGTATTTT CCTCTTCTCG TTCGATCCTC TCTCTCTCTT TGTTCTTTCT ATTTTCTTTA 27527 .......... .......... .......... .......... .......... .......... 124 TTCAAACCCT CTTTCTTTTA CCCTAATTAG CATATAATTA AGAATAAAAG ATGGCAATAA 27467 .......... .......... .......... .......... .......... .......... 124 TAACCCACTA ATTTACTCAA GGTTACCTCT TTTAACCCCC AAGTAATTAG ACTTATTAAC 27407 | ||||||| | |||||||||| |||||||||| | |||||||| |||||||||| ........TG TTTTACTCGA GGTTACCTCT TTTAACCCCC AGGTAATTAG ACTTATTAAC 176 ATTAACCCAC TAACTTTATA ATTAAAACAG GAATAGTCAA AAACTTCCTT TAAAACAT-T 27348 || ||||||| |||||||||| |||||| || |||||||| | |||| ||| | |||||| | | ATAAACCCAC TAACTTTATA ATTAAAGTAG GAATAGTCCA AAACGTCCCT TAAAACGTGT 236 AAAGAAATCC GACTCAGCCT GGGATTACGC AGCCTGTGAC GGCCTGTCAT GCCTGCGACG 27288 |||||||||| ||| ||| || |||||||||| | ||||||| |||| ||| | |||||||||| AAAGAAATCC GACCCAGACT GGGATTACGC AACCTGTGAT GGCCCGTCGT GCCTGCGACG 296 GTCCGTCCTG CTGCTCCGTC ACAGAGTTCA GAGACTC-AA TTCCCTTAAA GAGTCTGTGA 27229 |||||||||| | | | | || | ||||| ||||||| |||| ||| |||||||||| GTCCGTCCTG CAGGT-CTTC TCTAGGTTCA GAGACTCTCT TTCCACCAAA GAGTCTGTGA 355 C 27228 | C 356 hqPGS_C04HBa0077O05.1-_SGN-E396037+ (27458 27228) ******************************************************************************** EST sequence 293 +strand 730 n (File: SGN-E546506+) 1 TTTTTTTTTT TTTTTTTTAA TAAAAACAAT TCAATACTAT TATTATTATC CCCAAAATCT 61 GGAAGTCATC ATCACAAGAA CATCTATCTC AAATTACTTA ACTAGGAATG TCTAAGAACA 121 AAATAACTAA AAAGCTAGTC CATGCCGGAA ATTCAAGGCA TCAAGACTTG AAGAAGAAGA 181 CCCAGTCCAA GCTAGACGCA TTAGCTCACC CTGAATTTTC CGATGAAGTG AAGACTGGCT 241 AGATCTACTG TTGAGTTGAA GTTGACGGAA CGTTTGCTGC ATTACACAAA TAACAAAGAG 301 GAAAACATGA AAGTAGGGGT CAGTACAACC ACACGTACTG AGTAGATATC ATCGGCCAAC 361 TCAAAATAGG GAACAGTATA TATCAATAAT AATGTAAATC AACTACAATA CTCAACATGT 421 AGCAATAACA CCATGAATTC ATCAATAACT ACAACCGAGT TCACACATGA GGACTCAAGC 481 CTCAATACCA TACTCATTTG GGAATTAAGT TCATTAGATT GAGTATATTC ATTATCTTTC 541 AAGATTCATT ATCTTTCTTC CTCTTGTGTC GGTACGTGAC ACTCCGATCC TCTATTTCTA 601 TCCTGGTGCC GGAACGTGGC ACTCCGATCC TCATTCTATC CTGGTACCGG AACGTGGCAC 661 CCGATCCATT TTCTATCCTG GTGTCGGAAC GTGACACTCC GATCCTCATA TTCTATCCTG 721 GTACCGGAAC Predicted gene structure (within gDNA segment 29731 to 27104): Exon 1 28731 28172 ( 560 n); cDNA 41 595 ( 555 n); score: 0.792 Intron 1 28171 28022 ( 150 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0.86) Exon 2 28021 27885 ( 137 n); cDNA 596 730 ( 135 n); score: 0.920 PPA cDNA 18 1 MATCH C04HBa0077O05.1- SGN-E546506+ 0.817 697 0.955 C PGS_C04HBa0077O05.1-_SGN-E546506+ (28731 28172,28021 27885) Alignment (genomic DNA sequence = upper lines): TATTATTATC CCCAAAATCT GGAAGTCATT ATCACAAGAA CATCTACTTC AAATTACTAA 28672 |||||||||| |||||||||| ||||||||| |||||||||| |||||| || |||||||| | TATTATTATC CCCAAAATCT GGAAGTCATC ATCACAAGAA CATCTATCTC AAATTACTTA 100 ATCTAAGAGT ATCTAAGAAG TTAAAATACA TAAACAGCTA GTCCATGCCG GAACTTCAAG 28612 | ||| || | |||||||| |||||| |||| ||||| |||||||||| ||| |||||| A-CTAGGAAT GTCTAAGAA- -CAAAATAAC TAAAAAGCTA GTCCATGCCG GAAATTCAAG 157 GCATCAAGAC ATAAAGAAGA AGATCCAGTC CAAGCTAGAA GCTTTAGCTC ACCCTGAAAT 28552 |||||||||| | ||||||| ||| |||||| ||||||||| || ||||||| |||||||| | GCATCAAGAC TTGAAGAAGA AGACCCAGTC CAAGCTAGAC GCATTAGCTC ACCCTGAATT 217 CT-AG-TGTG ATGAAGACTG GCTAGAGTTG CGGTTGGATT GAAGACGACG ATACGTTTGC 28494 | | || ||||||||| |||||| | | |||| || |||| |||| |||||||| TTCCGATGAA GTGAAGACTG GCTAGATCTA CTGTTGAGTT GAAGTTGACG GAACGTTTGC 277 TGCACTCCAC AATGAACAAA -AAGAAAACA TACAAGTAGG GGTCAGTAGA AAACACGAGT 28435 |||| | ||| || |||||| | ||||||| | ||||||| |||||||| || ||| || TGCATTACAC AAATAACAAA GAGGAAAACA TGAAAGTAGG GGTCAGTA-C AACCACACGT 336 ACTGAGTAGA TATCATCGGC CAACTCAAAA TAGAAAACAG TATATATCAG ATAATATCAT 28375 |||||||||| |||||||||| |||||||||| ||| ||||| ||||||||| |||||| | ACTGAGTAGA TATCATCGGC CAACTCAAAA TAGGGAACAG TATATATCA- ATAATAATGT 395 AAAATCAACT ACAGTACTTA ACATGCAACA TTTACAATTA CCATAACCCT TGGTCA-TAA 28316 ||||||||| ||| |||| | ||||| | || | || | | | | | | | | || -AAATCAACT ACAATACTCA ACATGTAGCA ATAAC-ACCA TGA-ATTCAT CAATAACTAC 452 CACCAAACTC ATCAATGAGG ACTCACACCT CCCCATCATA CTCATTTGGG AATTAGGTTC 28256 ||| | || | |||||| ||||| ||| | | |||| |||||||||| ||||| |||| AACCGAGTTC ACACATGAGG ACTCAAGCCT CAATACCATA CTCATTTGGG AATTAAGTTC 512 ATTAAATTAA GTATATT-AA CATATTTCAA GATTCATTCT CTTTACTAAT CCTGGTGCCG 28197 |||| ||| | ||||||| | || |||||| |||||||| | |||| || || ||| || ATTAGATTGA GTATATTCAT TATCTTTCAA GATTCATTAT CTTT-CTTCC TCTTGTGTCG 571 GAACGTGACA CTCCGATCCT CATATACTAT CCTGGTACCA GAATGTGGCA CCCGATCCAT 28137 | |||||||| |||||||||| | ||| GTACGTGACA CTCCGATCCT C-TAT..... .......... .......... .......... 595 ATACTATCCT GGTGTCGGAA CGTGACACTC CGATCCTCAT AAACTATCCT GGTACCGGAA 28077 .......... .......... .......... .......... .......... .......... 595 CGTGGCACCC GATCCATATA CTATCCTGGT GTCGGAACGT GACACCCGAT CCATATACTA 28017 | ||| .......... .......... .......... .......... .......... .....TTCTA 600 TCCTGGTGTC GGAACTTGAC ACTCCGATCC TCACATACTA TCCTGGTACC GGAACGTGGC 27957 |||||||| | ||||| || | |||||||||| | ||| ||| |||||||||| |||||||||| TCCTGGTGCC GGAACGTGGC ACTCCGATCC T--CATTCTA TCCTGGTACC GGAACGTGGC 658 ACCCGATCCA TATACTATTC TGGTGTCGGA ACGTGACACT CCGATCCTCA TATACTATCC 27897 |||||||||| | | |||| | |||||||||| |||||||||| |||||||||| ||| |||||| ACCCGATCCA TTTTCTATCC TGGTGTCGGA ACGTGACACT CCGATCCTCA TATTCTATCC 718 TGGTACCGGA AC 27885 |||||||||| || TGGTACCGGA AC 730 hqPGS_C04HBa0077O05.1-_SGN-E546506+ (28731 28172,28021 27885) ******************************************************************************** EST sequence 150 -strand 717 n (File: SGN-E349726-) 1 TTATGTTCAT TAGATTGAGT ATATAACATC TTTCAAGATT CATTGTCTTT ATTTCTCTTG 61 TGTCGGTACG TGACATTCCG CTCCNTCATA TTCATTAATC TTCTTGTGTC GGTACGTGAT 121 ACTCTGATCC CCTAAATCTA CGTGTCGGAA CGTGACACTC CGATCCCCTA AATCTACGTG 181 TCGGTTCGTG ACACCTGATC CCCTAAATCT ACGTGTCGGT TCGTGACACC CGATCCCCTA 241 AATCTACGTG TCGGTTCGTG ACACCCGATC CCCTAAATCT ACGTGTCGGT TCGTGACACC 301 CGATCCCCTA ATCTATGTGT TGGTTCGTGA CACCTGATCC CTTAATCTAC GTGTCGGTTT 361 GTGACACCCG ATCCCCTAAT TCTACGTGTC AGTTCGTGAC ACCCGATCCC CTAATCTCAT 421 TCTATCAATT CATCAAGCCT TCTCCCTTAC CAAGGCATCA TCAATCTCAT TACTTTAGTT 481 CATCAAGCCT TCTCCCTTAC CAAGGCATCA TCATTAAAAA GAGATTAGGT TTTTACAAGA 541 TTTGGGATTC AATAACTTCA TCATGCTTAT ATAATAACAA TTATATAGTT ACATTCATGC 601 AAGCATACAA TTAAGCACAT AGCAGGGTTT ACAATATTAT CAATACATAT CATTCTCTAT 661 TAAGAGTTTA CTACGAATAT CGTAAGAGAA ACAATAACCT ACCTCCACCG AAGACTA Predicted gene structure (within gDNA segment 33232 to 26988): Exon 1 28209 27941 ( 269 n); cDNA 206 451 ( 246 n); score: 0.654 Intron 1 27940 27880 ( 61 n); Pd: 0.000 (s: 0.52), Pa: 0.000 (s: 0.74) Exon 2 27879 27615 ( 265 n); cDNA 452 717 ( 266 n); score: 0.806 MATCH C04HBa0077O05.1- SGN-E349726- 0.729 534 0.745 C PGS_C04HBa0077O05.1-_SGN-E349726- (28209 27941,27879 27615) Alignment (genomic DNA sequence = upper lines): AATCCTGGTG CCGGAACGTG ACACTCCGAT CCTCATATAC TATCCTGGTA CCAGAATGTG 28150 |||| ||| ||| |||| |||| ||||| || | || | | | | || | | ||| AATCTACGTG TCGGTTCGTG ACAC-CCGAT CCCC-TAAA- TCTACGTGT- C-GGTTCGTG 260 GCACCCGATC CATATACTAT CCTGGTGTCG GAACGTGACA CTCCGATCCT CATAAACTAT 28090 ||||||||| | || || | |||||| | ||||||| | ||||||| | ||| |||| ACACCCGATC C-CCTA-AAT CTACGTGTCG GTTCGTGACA C-CCGATCC- CCTAATCTAT 316 CCTGGTACCG GAACGTGGCA CCCGATCCAT ATACTATCCT GGTGTCGGAA CGTGACACCC 28030 | || | | |||| || || ||||| | || ||| ||||||| ||||||||| -GT-GT--TG GTTCGTGACA CCTGATCCCT -TA--ATCTA CGTGTCGGTT TGTGACACCC 369 GATCCATATA CTATCCTGGT GTCGGAACTT GACACTCCGA TCCTCACATA CTATCCTGGT 27970 ||||| || | || || ||| | | | ||||| |||| ||| | | || | || | | GATCC-CCTA AT-TCTACGT GTCAGTTCGT GACAC-CCGA TCC-C-C-TA ATCTCATTCT 423 ACCGGAACGT GGCACCCGAT CCATATACTA TTCTGGTGTC GGAACGTGAC ACTCCGATCC 27910 | | | | || | || | ||| ATCAATTCAT CAAGCCTTCT CCCT-TACC. .......... .......... .......... 451 TCATATACTA TCCTGGTACC GGAACGTGGC ACCCGATCCC CTAATCTCAC TACTTTCGTT 27850 | ||| | ||||||| |||||| ||| .......... .......... .......... AAGGCATCAT C-AATCTCAT TACTTTAGTT 480 CATCAAGCCT TCTTTTATAC CAAGGCATCA TCATTAACAA AGTAGATTAG GGCTTTTCAA 27790 |||||||||| ||| ||| |||||||||| ||||||| || || ||||||| | ||| ||| CATCAAGCCT TCTCCCTTAC CAAGGCATCA TCATTAA-AA AG-AGATTAG GTTTTTACAA 538 GATTTAAGAT TCAAGAGCTT CATCATGCTT AT-TCATCAC AATTATATAA TCACA-TCAT 27732 ||||| ||| |||| | ||| |||||||||| || | || || ||||||||| | ||| |||| GATTTGGGAT TCAATAACTT CATCATGCTT ATATAATAAC AATTATATAG TTACATTCAT 598 GTAAGGATAC AATTAATCAC ATAGAAGGGT TTACAACACT ACCCAATACA TATCATTCGC 27672 | ||| |||| |||||| ||| |||| ||||| |||||| | | | ||||||| |||||||| | GCAAGCATAC AATTAAGCAC ATAGCAGGGT TTACAATATT A-TCAATACA TATCATTCTC 657 TATTAAGAGT TTACTACGAA TA--GT-ATA AAAACCATAA CCTACCTCCA CCGAAGATTA 27615 |||||||||| |||||||||| || || | | |||| |||| |||||||||| ||||||| || TATTAAGAGT TTACTACGAA TATCGTAAGA GAAACAATAA CCTACCTCCA CCGAAGACTA 717 hqPGS_C04HBa0077O05.1-_SGN-E349726- (27879 27615) ******************************************************************************** EST sequence 137 -strand 402 n (File: SGN-E357559-) 1 TGTGTTGGTT CGTGACACCT GATCCCTTAA TCTACGTGTC GGTTTGTGAC ACCCGATCCC 61 CTAATTCTAC GTGTCAGTTC GTGACACCCG ATCCCCTAAT CTCATTCTAT CAATTCATCA 121 AGCCTTCTCC CTTACCAAGG CATCATCAAT CTCATTACTT TAGTTCATCA AGCCTTCTCC 181 CTTACCAAGG CATCATCATT AAAAAGAGAT TAGGTTTTTA CAAGATTTGG GATTCAATAA 241 CTTCATCATG CTTATATAAT AACAATTATA TAGTTACATT CATGCAAGCA TACAATTAAG 301 CACATAGCAG GGTTTACAAT ATTATCAATA CATATCATTC TCTATTAAGA GTTTACTACG 361 AATATCGTAA GAGAAACAAT AACCTACCTC CACCGAAGAC TA Predicted gene structure (within gDNA segment 30082 to 26988): Exon 1 29072 29057 ( 16 n); cDNA 133 147 ( 15 n); score: 0.625 Intron 1 29056 27868 (1189 n); Pd: 0.649 (s: 0), Pa: 0.000 (s: 0.88) Exon 2 27867 27615 ( 253 n); cDNA 148 402 ( 255 n); score: 0.824 MATCH C04HBa0077O05.1- SGN-E357559- 0.824 269 0.669 C PGS_C04HBa0077O05.1-_SGN-E357559- (29072 29057,27867 27615) Alignment (genomic DNA sequence = upper lines): TACCAATTGG ATCCAAGTAA TAACACAAAA GAAAGAAAGA AAGAATGGAA TTTTCCTAAA 29013 |||||| | ||| TACCAAG-GC ATCATC.... .......... .......... .......... .......... 147 GTCTTATAGC CTCTCAAAGA AAAGTAAAGG CGTCCCCCTA CCGTTCCTTA AGACTCTACT 28953 .......... .......... .......... .......... .......... .......... 147 AGACTCGTTC TTGTGTGATG AGACCAACGA ACCTAATGCT CTGATACCAA GTTTGTCACG 28893 .......... .......... .......... .......... .......... .......... 147 ACCCAAATCG GGTCGCGACT GGCACCCACA CTTACCCTCC TATGTGAGCG AACCAACCAA 28833 .......... .......... .......... .......... .......... .......... 147 TCTAAACCTT AACATTTCAA TATAATATCA ACAGAAAGTA ATGCGGAAGA CTTAAACTCA 28773 .......... .......... .......... .......... .......... .......... 147 TTAATAAAAA CCAATTCAAT AACTTCTAAA AACTCAACAA CTATTATTAT CCCCAAAATC 28713 .......... .......... .......... .......... .......... .......... 147 TGGAAGTCAT TATCACAAGA ACATCTACTT CAAATTACTA AATCTAAGAG TATCTAAGAA 28653 .......... .......... .......... .......... .......... .......... 147 GTTAAAATAC ATAAACAGCT AGTCCATGCC GGAACTTCAA GGCATCAAGA CATAAAGAAG 28593 .......... .......... .......... .......... .......... .......... 147 AAGATCCAGT CCAAGCTAGA AGCTTTAGCT CACCCTGAAA TCTAGTGTGA TGAAGACTGG 28533 .......... .......... .......... .......... .......... .......... 147 CTAGAGTTGC GGTTGGATTG AAGACGACGA TACGTTTGCT GCACTCCACA ATGAACAAAA 28473 .......... .......... .......... .......... .......... .......... 147 AGAAAACATA CAAGTAGGGG TCAGTAGAAA ACACGAGTAC TGAGTAGATA TCATCGGCCA 28413 .......... .......... .......... .......... .......... .......... 147 ACTCAAAATA GAAAACAGTA TATATCAGAT AATATCATAA AATCAACTAC AGTACTTAAC 28353 .......... .......... .......... .......... .......... .......... 147 ATGCAACATT TACAATTACC ATAACCCTTG GTCATAACAC CAAACTCATC AATGAGGACT 28293 .......... .......... .......... .......... .......... .......... 147 CACACCTCCC CATCATACTC ATTTGGGAAT TAGGTTCATT AAATTAAGTA TATTAACATA 28233 .......... .......... .......... .......... .......... .......... 147 TTTCAAGATT CATTCTCTTT ACTAATCCTG GTGCCGGAAC GTGACACTCC GATCCTCATA 28173 .......... .......... .......... .......... .......... .......... 147 TACTATCCTG GTACCAGAAT GTGGCACCCG ATCCATATAC TATCCTGGTG TCGGAACGTG 28113 .......... .......... .......... .......... .......... .......... 147 ACACTCCGAT CCTCATAAAC TATCCTGGTA CCGGAACGTG GCACCCGATC CATATACTAT 28053 .......... .......... .......... .......... .......... .......... 147 CCTGGTGTCG GAACGTGACA CCCGATCCAT ATACTATCCT GGTGTCGGAA CTTGACACTC 27993 .......... .......... .......... .......... .......... .......... 147 CGATCCTCAC ATACTATCCT GGTACCGGAA CGTGGCACCC GATCCATATA CTATTCTGGT 27933 .......... .......... .......... .......... .......... .......... 147 GTCGGAACGT GACACTCCGA TCCTCATATA CTATCCTGGT ACCGGAACGT GGCACCCGAT 27873 .......... .......... .......... .......... .......... .......... 147 CCCCTAATCT CACTACTTTC GTTCATCAAG CCTTCTTTTA TACCAAGGCA TCATCATTAA 27813 ||||| || |||||| |||||||||| |||||| |||||||||| |||||||||| .....AATCT CATTACTTTA GTTCATCAAG CCTTCTCCCT TACCAAGGCA TCATCATTAA 202 CAAAGTAGAT TAGGGCTTTT CAAGATTTAA GATTCAAGAG CTTCATCATG CTTAT-TCAT 27754 |||| |||| |||| ||| |||||||| ||||||| | |||||||||| ||||| | || -AAAG-AGAT TAGGTTTTTA CAAGATTTGG GATTCAATAA CTTCATCATG CTTATATAAT 260 CACAATTATA TAATCACA-T CATGTAAGGA TACAATTAAT CACATAGAAG GGTTTACAAC 27695 ||||||||| || | ||| | |||| ||| | ||||||||| ||||||| || ||||||||| AACAATTATA TAGTTACATT CATGCAAGCA TACAATTAAG CACATAGCAG GGTTTACAAT 320 ACTACCCAAT ACATATCATT CGCTATTAAG AGTTTACTAC GAATA--GT- ATAAAAACCA 27638 | || |||| |||||||||| | |||||||| |||||||||| ||||| || | | |||| | ATTA-TCAAT ACATATCATT CTCTATTAAG AGTTTACTAC GAATATCGTA AGAGAAACAA 379 TAACCTACCT CCACCGAAGA TTA 27615 |||||||||| |||||||||| || TAACCTACCT CCACCGAAGA CTA 402 hqPGS_C04HBa0077O05.1-_SGN-E357559- (27867 27615) ******************************************************************************** EST sequence 145 -strand 725 n (File: SGN-E546548-) 1 GGTACCGGAA CGTGGCACCC GATCCATATT CTATCCTGGT GTCGGAACGT GACACTCCGA 61 TCCTCATATT CATTCTATCC TGGTACCGGA ACGTGGCACC CGATCCCCTA ATCCATCAAG 121 CCTTCTTTTA CACTAAGGCA TCATCATTCT CATTATATAA TTTATCAAGC CTTCTTTCAT 181 ACTAAGGCAT CATCATTCTC ATTATATAAT ATATCAAGCG AATTAGGGTT CTTTCAAGAT 241 TTGGGATTCA ATTGCTTCAT CATGCTTTGT TAATTCATCG CAATTTCATA ATCATAATCA 301 TGCAAGCATA CAACTTAAGC ACATAGCAGG GTTTACAATA CTATCAACAC ATAATATTCA 361 CTATTAAGAG TTCACTACGA ATATCGTAAC ATAAACCATA ACCTACCTCC ACCGAAGAAT 421 TGAATCAACA AGCTATCTTC TCAAAATCCT TGCTATCCTC TTCGTTTCTC TCTCTCTACT 481 CGTTCGTTTC TCCTCTCTTT CTGTTCTTTT CTTTTGTTTT GTTTTATTCA AACCCTCCTT 541 CTTTTTACCC TAATTAAAAG TATAATTAAG TGTAAAGGAG GACAATAAAA CCCACTAATT 601 AACTTAAGGT TACCTCTTTT AACCCCCAAG TAATTAGACC TATTAATATT AACCCTCAAT 661 CTTTATAATT AAGGAAAGAA TAGTCCAAAA CGACCCCTAA AACGTGTAGA GGAATCCTAT 721 TTTGC Predicted gene structure (within gDNA segment 28872 to 21182): Exon 1 28163 28062 ( 102 n); cDNA 1 106 ( 106 n); score: 0.863 Intron 1 28061 27956 ( 106 n); Pd: 0.000 (s: 0.76), Pa: 0.000 (s: 0.48) Exon 2 27955 27901 ( 55 n); cDNA 107 161 ( 55 n); score: 0.509 Intron 2 27900 27869 ( 32 n); Pd: 0.000 (s: 0.50), Pa: 0.000 (s: 0.52) Exon 3 27868 27330 ( 539 n); cDNA 162 725 ( 564 n); score: 0.657 MATCH C04HBa0077O05.1- SGN-E546548- 0.675 696 0.960 C PGS_C04HBa0077O05.1-_SGN-E546548- (28163 28062,27955 27901,27868 27330) Alignment (genomic DNA sequence = upper lines): GGTACCAGAA TGTGGCACCC GATCCATATA CTATCCTGGT GTCGGAACGT GACACTCCGA 28104 |||||| ||| ||||||||| ||||||||| |||||||||| |||||||||| |||||||||| GGTACCGGAA CGTGGCACCC GATCCATATT CTATCCTGGT GTCGGAACGT GACACTCCGA 60 TCCTCATA-- -A-ACTATCC TGGTACCGGA ACGTGGCACC CGATCCATAT ACTATCCTGG 28048 |||||||| | |||||| |||||||||| |||||||||| |||||| TCCTCATATT CATTCTATCC TGGTACCGGA ACGTGGCACC CGATCC.... .......... 106 TGTCGGAACG TGACACCCGA TCCATATACT ATCCTGGTGT CGGAACTTGA CACTCCGATC 27988 .......... .......... .......... .......... .......... .......... 106 CTCACATACT ATCCTGGTAC CGGAACGTGG CACCCGATCC ATATACTATT CTGGTGTCGG 27928 || |||| || | || || | .......... .......... .......... ..CCTAATCC ATCAAGCCTT CTTTTACACT 134 AACGTGACAC TCCGATCCTC ATATACTATC CTGGTACCGG AACGTGGCAC CCGATCCCCT 27868 || | || || | ||||| | | AAGGCATCAT CATTCTCATT ATATAAT... .......... .......... .........T 162 AATC-TCACT ACTTTCGTTC ATCAAGCCTT CTTTTATACC AAGGCATCAT CATTAACAAA 27809 ||| || ||||| | | | ||| | | | | || | | || || || | || TATCAAGCCT TCTTTCATAC -T-AAGGCAT C-ATCATTCT CA-TTAT-AT AATATATCAA 217 GTAGATTAGG GCT-TTTCAA GATTTAAGAT TCAAGAGCTT CATCATGC-T T----ATTCA 27755 | |||||| | | |||||| ||||| ||| |||| |||| |||||||| | | ||||| GCGAATTAGG GTTCTTTCAA GATTTGGGAT TCAATTGCTT CATCATGCTT TGTTAATTCA 277 TCACAATTAT ATAATCAC-A TCATGTAAGG ATACAA-TTA ATCACATAGA AGGGTTTACA 27697 || ||||| ||||||| | ||||| ||| |||||| ||| | ||||||| |||||||||| TCGCAATTTC ATAATCATAA TCATGCAAGC ATACAACTTA AGCACATAGC AGGGTTTACA 337 ACACTACCCA ATACATATCA TTCGCTATTA AGAGTTTACT ACGAATA--G T-ATAAAAAC 27640 | |||| || | ||||| | ||| |||||| |||||| ||| ||||||| | | | | |||| ATACTA-TCA ACACATAATA TTCACTATTA AGAGTTCACT ACGAATATCG TAACATAAAC 396 CATAACCTAC CTCCACCGAA G-ATT-AGTG ATCAAGC-A- ---AGCAAAT TCC--CCAAA 27589 |||||||||| |||||||||| | ||| | | | ||||| | |||| ||| | | CATAACCTAC CTCCACCGAA GAATTGAATC AACAAGCTAT CTTCTCAAAA TCCTTGCTAT 456 GCT-TT-GTA T-TTTC-CTC TTCTCGTTCG ATCCT-CTCT CTCTCT-TTG TTCT-TTCTA 27536 || || || | | || ||| | |||||||| | || |||| || ||| || || | || | CCTCTTCGTT TCTCTCTCTC TACTCGTTCG TTTCTCCTCT CTTTCTGTTC TTTTCTTTTG 516 TTTT-CTTTA TTCAAACCCT CTTTC-TTTT ACCCTAATTA GCA-TATAAT TAAGAATAAA 27479 |||| |||| |||||||||| | ||| |||| |||||||||| | |||||| |||| |||| TTTTGTTTTA TTCAAACCCT CCTTCTTTTT ACCCTAATTA AAAGTATAAT TAAGTGTAAA 576 AGATGGCAAT AATAACCCAC TAATTTACTC AAGGTTACCT CTTTTAACCC CCAAGTAATT 27419 || | |||| || ||||||| ||||| ||| |||||||||| |||||||||| |||||||||| GGAGGACAAT AA-AACCCAC TAATTAACTT AAGGTTACCT CTTTTAACCC CCAAGTAATT 635 AGACTTATTA ACATTAACCC ACTAACTTTA TAATTAAAAC AGGAATAGTC AAAAACTTCC 27359 |||| ||||| | |||||||| | | ||||| ||||||| | |||||||| ||||| || AGACCTATTA ATATTAACCC TCAATCTTTA TAATTAAGGA AAGAATAGTC CAAAACGACC 695 TTTAAAACAT -TAAAGAAAT CCGACTCAGC 27330 |||||| | || || ||| || | | || CCTAAAACGT GTAGAGGAAT CCTATTTTGC 725 hqPGS_C04HBa0077O05.1-_SGN-E546548- (28163 28062) ******************************************************************************** EST sequence 121 -strand 481 n (File: SGN-E246710-) 1 AGTCCAAGCT AGAAGCATTA GCTCACCCTG AATTTCCGAT GTAGTAAGAC TGGCTTGAAT 61 TACTGTTGAG TTGAACACGA TGGCACGTTT GCTGCACTCC ACAAATAAAC AAGAAGAGAA 121 CATAAAAGTA GGGGTCAGTA CAAAACACGG GTACTGAGTA GATATCATCG GCCAACTCAA 181 AATAGAAATC AATATATATA CCAAGTAATA TCATAAAATC AACTATGATA CTCAACATGT 241 AGCAACAACA AATACTATAT CATTAACAAT TACCGTCAAG TTCACACATG AGGACTCAAG 301 CCTCAATACC ATACTCATTT GGGAATCATG TTCATTAGAT TGAGTATATT AACATCTTTC 361 AAGATTCATT ATCTTTATTT CTCTTGTGTC GGTACGTGAC ACTCCGCTCC CTCAATATTC 421 ATTAATCCTC TTGTGTCGGT ACGTGACACT CCGATCCCCT AAATCTATAT GTCGGTTTGT 481 G Predicted gene structure (within gDNA segment 30546 to 25204): Exon 1 28585 28182 ( 404 n); cDNA 1 406 ( 406 n); score: 0.788 MATCH C04HBa0077O05.1- SGN-E246710- 0.788 404 0.840 C PGS_C04HBa0077O05.1-_SGN-E246710- (28585 28182) Alignment (genomic DNA sequence = upper lines): AGTCCAAGCT AGAAGCTTTA GCTCACCCTG AAATCTAGTG TGATGAAGAC TGGCTAGAGT 28526 |||||||||| |||||| ||| |||||||||| || | | | ||||| ||||| || | AGTCCAAGCT AGAAGCATTA GCTCACCCTG AATTTCCGAT GTAGTAAGAC TGGCTTGAAT 60 TGCGGTTGGA TTGAAGACGA CGATACGTTT GCTGCACTCC AC-AATGAAC AAAAAGAAAA 28467 | | |||| ||||| |||| | |||||| |||||||||| || ||| ||| || |||| || TACTGTTGAG TTGAACACGA TGGCACGTTT GCTGCACTCC ACAAATAAAC AAGAAGAGAA 120 CATACAAGTA GGGGTCAGTA GAAAACACGA GTACTGAGTA GATATCATCG GCCAACTCAA 28407 |||| ||||| |||||||||| |||||||| |||||||||| |||||||||| |||||||||| CATAAAAGTA GGGGTCAGTA CAAAACACGG GTACTGAGTA GATATCATCG GCCAACTCAA 180 AATAGAAAAC AGTATATAT- -CAGATAATA TCATAAAATC AACTACAGTA CTTAACATGC 28349 |||||||| | | ||||||| || ||||| |||||||||| ||||| || || |||||| AATAGAAATC AATATATATA CCAAGTAATA TCATAAAATC AACTATGATA CTCAACATGT 240 AACATTTACA ATTACCATAA CCCTTGGTCA TAACACCAAA CTCATCAATG AGGACTCACA 28289 | || ||| | ||| ||| | | || | ||| ||| ||| |||||||| AGCAACAACA AATACTATAT CATTAACAAT TACCGTCAAG TTCACACATG AGGACTCAAG 300 CCTCCCCATC ATACTCATTT GGGAATTAGG TTCATTAAAT TAAGTATATT AACATATTTC 28229 |||| | | |||||||||| |||||| | | ||||||| || | |||||||| ||||| |||| CCTCAATACC ATACTCATTT GGGAATCATG TTCATTAGAT TGAGTATATT AACATCTTTC 360 AAGATTCATT CTCTTTACTA ATCCTGGTGC CGGAACGTGA CACTCCG 28182 |||||||||| |||||| | | || ||| ||| |||||| ||||||| AAGATTCATT ATCTTTATTT CT-CTTGTGT CGGTACGTGA CACTCCG 406 hqPGS_C04HBa0077O05.1-_SGN-E246710- (28585 28182) ******************************************************************************** EST sequence 152 -strand 236 n (File: SGN-E209683-) 1 CACAAATAAC AAGAAGATAA ACATAAAAGT AGGGGTCAGT ACAAACCACG GGTACTGAGT 61 AGATATCATC GGCCAACTCA AAATAGGGAA CAGTATGTAT TAAGCAATAT CATAAAATCA 121 ACTAATATCC TTAACATGCA GCATTTATAG TTACCATAAC CCTTGGTTAC AACACCAAGC 181 ACATCAATGA GGACTCACAC CTCCTCATCA TACTCATTTG GGAATTTAGT TCATTA Predicted gene structure (within gDNA segment 29556 to 27562): Exon 1 28486 28252 ( 235 n); cDNA 1 236 ( 236 n); score: 0.870 MATCH C04HBa0077O05.1- SGN-E209683- 0.870 235 0.996 C PGS_C04HBa0077O05.1-_SGN-E209683- (28486 28252) Alignment (genomic DNA sequence = upper lines): CACAATGAAC AAAAAGA-AA ACATACAAGT AGGGGTCAGT AGAAAACACG AGTACTGAGT 28428 ||||| ||| || |||| || ||||| |||| |||||||||| | ||| |||| ||||||||| CACAAATAAC AAGAAGATAA ACATAAAAGT AGGGGTCAGT ACAAACCACG GGTACTGAGT 60 AGATATCATC GGCCAACTCA AAATAGAAAA CAGTATATAT CAGATAATAT CATAAAATCA 28368 |||||||||| |||||||||| |||||| || |||||| ||| | ||||| |||||||||| AGATATCATC GGCCAACTCA AAATAGGGAA CAGTATGTAT TAAGCAATAT CATAAAATCA 120 ACTACAGTAC TTAACATGCA ACATTTACAA TTACCATAAC CCTTGGTCAT AACACCAAAC 28308 |||| | | |||||||||| |||||| | |||||||||| ||||||| | |||||||| | ACTAATATCC TTAACATGCA GCATTTATAG TTACCATAAC CCTTGGTTAC AACACCAAGC 180 TCATCAATGA GGACTCACAC CTCCCCATCA TACTCATTTG GGAATTAGGT TCATTA 28252 ||||||||| |||||||||| |||| ||||| |||||||||| |||||| || |||||| ACATCAATGA GGACTCACAC CTCCTCATCA TACTCATTTG GGAATTTAGT TCATTA 236 hqPGS_C04HBa0077O05.1-_SGN-E209683- (28486 28252) ******************************************************************************** EST sequence 67 -strand 729 n (File: SGN-E351546-) 1 AGTCGTTGCT CTAGTTCTAC CCATCTGGCA AGAGAGTGAG NATGGTCAGA TACCAATTCG 61 TATCGCTTAG ATACCAATTG ACTCGAAGTA GTAGCACGAA AGAAAGAATG AAAGAGTGAA 121 GTTTTCCTAA AGTCTTATAG CCTCTCAAGG AAAAGTAAAA GCGTCCCCCT ACCGTTCCTT 181 AAGACTCTAC TAGACTTGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 241 AGTTTTGTCA CGACCCAAAT CCGGGCCGCC ACTGGCACCC ACACTTACCC TCCTATGTGA 301 GCGAACCAAC CAATCTAAAC CTTAACATTT CAATGTAATA GCAACAGAAA GTAATGCGGA 361 AGACTTAAAC TCATTAATAA AATCAATAAC TACTATTATT AAACATCTAT TATTCCCAAA 421 ACCTGGAAGT CATCATCACA AGAACATCTA CTTTAAACTA CTAATTCTAA GAGTTTCTAA 481 GAAGCTAAAA AATTACATAA GAAGCTAGTC CATGCCGGAA GTTCAAGGCA TCAAGACATG 541 AAGGAGAAGA TCCAGTCCAA GCTAGAAGCG TTAGCTCACC CTGAAGATCC GGTGTGACGA 601 AGACTGGCTT GAGTTACTGT TGAGTCGAAG ATGACGGCAC GTTTGCTGCA CTCCACAAAT 661 ACCAAGAAGA AAAACATAAA AGTAGGGGTC AGTACAAAAC ACGGCTACTG AGTAGATATC 721 ATCGGCCAA Predicted gene structure (within gDNA segment 30842 to 26370): Exon 1 29143 28412 ( 732 n); cDNA 2 729 ( 728 n); score: 0.874 MATCH C04HBa0077O05.1- SGN-E351546- 0.874 732 1.004 C PGS_C04HBa0077O05.1-_SGN-E351546- (29143 28412) Alignment (genomic DNA sequence = upper lines): GTCGTTGCTC TAGTTCTAAC CATCTGCGAA ATAGAGTGAA GATGGTCAGA TACCAATTTG 29084 |||||||||| |||||||| | |||||| | | | ||||||| ||||||||| |||||||| | GTCGTTGCTC TAGTTCTACC CATCTG-GCA AGAGAGTGAG NATGGTCAGA TACCAATTCG 60 TATCACCTAG ATACCAATTG GATCCAAGTA ATAACACAAA AGAAAGAAAG AAAGAATGGA 29024 |||| | ||| |||||||||| || ||||| || ||| || |||||||| | ||||| || | TATCGCTTAG ATACCAATTG ACTCGAAGTA GTAGCACGAA AGAAAGAATG AAAGAGTGAA 120 ATTTTCCTAA AGTCTTATAG CCTCTCAAAG AAAAGTAAAG GCGTCCCCCT ACCGTTCCTT 28964 ||||||||| |||||||||| |||||||| | ||||||||| |||||||||| |||||||||| GTTTTCCTAA AGTCTTATAG CCTCTCAAGG AAAAGTAAAA GCGTCCCCCT ACCGTTCCTT 180 AAGACTCTAC TAGACTCGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 28904 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACTCTAC TAGACTTGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 240 AG-TTTGTCA CGACCCAAAT -CGGGTCGCG ACTGGCACCC ACACTTACCC TCCTATGTGA 28846 || ||||||| |||||||||| |||| ||| |||||||||| |||||||||| |||||||||| AGTTTTGTCA CGACCCAAAT CCGGGCCGCC ACTGGCACCC ACACTTACCC TCCTATGTGA 300 GCGAACCAAC CAATCTAAAC CTTAACATTT CAATATAATA TCAACAGAAA GTAATGCGGA 28786 |||||||||| |||||||||| |||||||||| |||| ||||| ||||||||| |||||||||| GCGAACCAAC CAATCTAAAC CTTAACATTT CAATGTAATA GCAACAGAAA GTAATGCGGA 360 AGACTTAAAC TCATTAATAA AAACCAATTC AATAACTTCT AAAAACTCAA CAACTATTAT 28726 |||||||||| |||||||| || || || ||||||| || | | | || || |||||| AGACTTAAAC TCATTAAT-- -AA--AA-TC AATAACTACT -ATTATTAAA CATCTATTA- 412 TATCCCCAAA ATCTGGAAGT CATTATCACA AGAACATCTA CTTCAAATTA CTAAATCTAA 28666 | | |||||| | |||||||| ||| |||||| |||||||||| ||| ||| || |||| ||||| T-T-CCCAAA ACCTGGAAGT CATCATCACA AGAACATCTA CTTTAAACTA CTAATTCTAA 470 GAGTATCTAA GAAG-T-TAA AA-TACATAA ACAGCTAGTC CATGCCGGAA CTTCAAGGCA 28609 |||| ||||| |||| | || || ||||||| |||||||| |||||||||| ||||||||| GAGTTTCTAA GAAGCTAAAA AATTACATAA GAAGCTAGTC CATGCCGGAA GTTCAAGGCA 530 TCAAGACATA AAGAAGAAGA TCCAGTCCAA GCTAGAAGCT TTAGCTCACC CTGAA-ATCT 28550 ||||||||| ||| |||||| |||||||||| ||||||||| |||||||||| ||||| ||| TCAAGACATG AAGGAGAAGA TCCAGTCCAA GCTAGAAGCG TTAGCTCACC CTGAAGATCC 590 AGTGTGATGA AGACTGGCTA GAGTTGCGGT TGGATTGAAG ACGACGATAC GTTTGCTGCA 28490 |||||| || ||||||||| ||||| | || || | |||| | |||| || |||||||||| GGTGTGACGA AGACTGGCTT GAGTTACTGT TGAGTCGAAG ATGACGGCAC GTTTGCTGCA 650 CTCCACAATG AACAAAAAG- AAAACATACA AGTAGGGGTC AGTAGAAAAC ACGAGTACTG 28431 |||||||| | ||| ||| |||||||| | |||||||||| |||| ||||| ||| ||||| CTCCACAAAT ACCAAGAAGA AAAACATAAA AGTAGGGGTC AGTACAAAAC ACGGCTACTG 710 AGTAGATATC ATCGGCCAA 28412 |||||||||| ||||||||| AGTAGATATC ATCGGCCAA 729 hqPGS_C04HBa0077O05.1-_SGN-E351546- (29143 28412) ******************************************************************************** EST sequence 130 -strand 655 n (File: SGN-E356696-) 1 CAATTGGACT CAAGTAGTAG CACGAAAGAA AGAATGAAAG AGTGAAGTTT TCCTAAAGTC 61 TTATAGCCTC TCAAGGAAAA GTAAAAGCGT CCCCCTACCG TTCCTTAAGA CTCTACTAGA 121 CTTGTTCTTG TGTGATGAGA CCAACGAACC TAATGCTCTG ATACCAAGTT TTGTCACGAC 181 CCAAATCCGG GCCGCCACTG GCACCCACAC TTACCCTCNT ATGTGAGCGA ACCAACCAAT 241 CTAAACCTTA ACATTTCAAT GTAATAGCAA CAGAAAGTAA TGCGGAAGAC TTAAACTCAT 301 TAATAAAATC AATAACTACT ATTATTAAAC ATCTATTATT CCCAAAACCT GGAAGTCATC 361 ATCACAAGAA CATCTACTTT AAACTACTAA TTCTAAGAGT TTCTAAGAAG CTAAAAAATT 421 ACATAAGAAG CTAGTCCATG CCGGAAGTTC AAGGCATCAA GACATGAAGG AGAAGATCCA 481 GTCCAAGCTA GAAGCGTTAG CTCACCCTGA AGATCCGGTG TGACGAAGAC TGGCTTGAGT 541 TACTGTTGAG TCGAAGATGA CGGCACGTTT GCTGCACTCC ACAAATAACA AGAAGAAAAA 601 CATAAAAGTA GGGGTCAGTA CAAAACACGG CTACTGAGTA GATATCATCG GCCAA Predicted gene structure (within gDNA segment 30102 to 26370): Exon 1 29069 28412 ( 658 n); cDNA 1 655 ( 655 n); score: 0.875 MATCH C04HBa0077O05.1- SGN-E356696- 0.875 658 1.005 C PGS_C04HBa0077O05.1-_SGN-E356696- (29069 28412) Alignment (genomic DNA sequence = upper lines): CAATTGGATC CAAGTAATAA CACAAAAGAA AGAAAGAAAG AATGGAATTT TCCTAAAGTC 29010 |||||||| |||||| || ||| |||||| |||| ||||| | || | ||| |||||||||| CAATTGGACT CAAGTAGTAG CACGAAAGAA AGAATGAAAG AGTGAAGTTT TCCTAAAGTC 60 TTATAGCCTC TCAAAGAAAA GTAAAGGCGT CCCCCTACCG TTCCTTAAGA CTCTACTAGA 28950 |||||||||| |||| ||||| ||||| |||| |||||||||| |||||||||| |||||||||| TTATAGCCTC TCAAGGAAAA GTAAAAGCGT CCCCCTACCG TTCCTTAAGA CTCTACTAGA 120 CTCGTTCTTG TGTGATGAGA CCAACGAACC TAATGCTCTG ATACCAAG-T TTGTCACGAC 28891 || ||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| CTTGTTCTTG TGTGATGAGA CCAACGAACC TAATGCTCTG ATACCAAGTT TTGTCACGAC 180 CCAAAT-CGG GTCGCGACTG GCACCCACAC TTACCCTCCT ATGTGAGCGA ACCAACCAAT 28832 |||||| ||| | ||| |||| |||||||||| |||||||| | |||||||||| |||||||||| CCAAATCCGG GCCGCCACTG GCACCCACAC TTACCCTCNT ATGTGAGCGA ACCAACCAAT 240 CTAAACCTTA ACATTTCAAT ATAATATCAA CAGAAAGTAA TGCGGAAGAC TTAAACTCAT 28772 |||||||||| |||||||||| ||||| ||| |||||||||| |||||||||| |||||||||| CTAAACCTTA ACATTTCAAT GTAATAGCAA CAGAAAGTAA TGCGGAAGAC TTAAACTCAT 300 TAATAAAAAC CAATTCAATA ACTTCTAAAA ACTCAACAAC TATTATTATC CCCAAAATCT 28712 |||| || || |||||| ||| || | | | |||| | ||||| | | ||||||| || TAAT---AA- -AA-TCAATA ACTACT-ATT ATTAAACATC TATTA-T-T- CCCAAAACCT 350 GGAAGTCATT ATCACAAGAA CATCTACTTC AAATTACTAA ATCTAAGAGT ATCTAAGAAG 28652 ||||||||| |||||||||| ||||||||| ||| |||||| ||||||||| ||||||||| GGAAGTCATC ATCACAAGAA CATCTACTTT AAACTACTAA TTCTAAGAGT TTCTAAGAAG 410 -T-TAAAA-T ACATAAACAG CTAGTCCATG CCGGAACTTC AAGGCATCAA GACATAAAGA 28595 | |||| | |||||| || |||||||||| |||||| ||| |||||||||| ||||| ||| CTAAAAAATT ACATAAGAAG CTAGTCCATG CCGGAAGTTC AAGGCATCAA GACATGAAGG 470 AGAAGATCCA GTCCAAGCTA GAAGCTTTAG CTCACCCTGA A-ATCTAGTG TGATGAAGAC 28536 |||||||||| |||||||||| ||||| |||| |||||||||| | ||| ||| ||| |||||| AGAAGATCCA GTCCAAGCTA GAAGCGTTAG CTCACCCTGA AGATCCGGTG TGACGAAGAC 530 TGGCTAGAGT TGCGGTTGGA TTGAAGACGA CGATACGTTT GCTGCACTCC ACAATGAACA 28476 ||||| |||| | | |||| | ||||| || || |||||| |||||||||| |||| |||| TGGCTTGAGT TACTGTTGAG TCGAAGATGA CGGCACGTTT GCTGCACTCC ACAAATAACA 590 AAAAG-AAAA CATACAAGTA GGGGTCAGTA GAAAACACGA GTACTGAGTA GATATCATCG 28417 | ||| |||| |||| ||||| |||||||||| |||||||| ||||||||| |||||||||| AGAAGAAAAA CATAAAAGTA GGGGTCAGTA CAAAACACGG CTACTGAGTA GATATCATCG 650 GCCAA 28412 ||||| GCCAA 655 hqPGS_C04HBa0077O05.1-_SGN-E356696- (29069 28412) ******************************************************************************** EST sequence 125 -strand 580 n (File: SGN-E356206-) 1 GAAAAGTAAA AGCGTCCCCN TACCGTCCCT TAAGACTCTA CTAGACTTGT TCTTGTGTGA 61 TGAGACCAAC GACCCTAATG CTCTGATACC AAGTTTTGTC ACGACCCAAA TCCGGGCCGC 121 CACTGGCACC CACACTTACC CTCCTATGTG AGCGAACCAA CCAATCTAAA CCTTAACATT 181 TCAATGTAAT AGCAACAGAA AGTAATGCGG AAGACTTAAA CTCATTAATA AAATCAATAA 241 CTACTATTAT TAAACATCTA TTATTCCCAA AACCTGGAAG TCATCATCAC AAGAACATCT 301 ACTTTAAACT ACTAATTCTA AGAGTTTCTA AGAAGCTAAA AAATTACATA AGAAGCTAGT 361 CCATGCCGGA AGTTCAAGGC ATCAAGACAT GAAGGAGAAG ATCCAGTCCA AGCTAGAAGC 421 GTTAGCTCAC CCTGAAGATC CGGTGTGACG AAGACTGGCT TGAGTTACTG TTGAGTCGAA 481 GATGACGGCA CGTTTGCTGC ACTCCACAAA TAACAAGAAG AAAAACATAA AAGTAGGGGT 541 CAGTACAAAA CACGGCTACT GAGTAGATAT CATCGGCCAA Predicted gene structure (within gDNA segment 29847 to 26370): Exon 1 28994 28412 ( 583 n); cDNA 1 580 ( 580 n); score: 0.872 MATCH C04HBa0077O05.1- SGN-E356206- 0.872 583 1.005 C PGS_C04HBa0077O05.1-_SGN-E356206- (28994 28412) Alignment (genomic DNA sequence = upper lines): GAAAAGTAAA GGCGTCCCCC TACCGTTCCT TAAGACTCTA CTAGACTCGT TCTTGTGTGA 28935 |||||||||| |||||||| |||||| ||| |||||||||| ||||||| || |||||||||| GAAAAGTAAA AGCGTCCCCN TACCGTCCCT TAAGACTCTA CTAGACTTGT TCTTGTGTGA 60 TGAGACCAAC GAACCTAATG CTCTGATACC AAG-TTTGTC ACGACCCAAA T-CGGGTCGC 28877 |||||||||| || ||||||| |||||||||| ||| |||||| |||||||||| | |||| ||| TGAGACCAAC GACCCTAATG CTCTGATACC AAGTTTTGTC ACGACCCAAA TCCGGGCCGC 120 GACTGGCACC CACACTTACC CTCCTATGTG AGCGAACCAA CCAATCTAAA CCTTAACATT 28817 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTGGCACC CACACTTACC CTCCTATGTG AGCGAACCAA CCAATCTAAA CCTTAACATT 180 TCAATATAAT ATCAACAGAA AGTAATGCGG AAGACTTAAA CTCATTAATA AAAACCAATT 28757 ||||| |||| | |||||||| |||||||||| |||||||||| ||||||||| || || | TCAATGTAAT AGCAACAGAA AGTAATGCGG AAGACTTAAA CTCATTAAT- --AA--AA-T 234 CAATAACTTC TAAAAACTCA ACAACTATTA TTATCCCCAA AATCTGGAAG TCATTATCAC 28697 |||||||| | | | | | | ||| |||||| | | ||||| || ||||||| |||| ||||| CAATAACTAC T-ATTATTAA ACATCTATTA -T-T-CCCAA AACCTGGAAG TCATCATCAC 290 AAGAACATCT ACTTCAAATT ACTAAATCTA AGAGTATCTA AGAAG-T-TA AAA-TACATA 28640 |||||||||| |||| ||| | ||||| |||| ||||| |||| ||||| | | ||| |||||| AAGAACATCT ACTTTAAACT ACTAATTCTA AGAGTTTCTA AGAAGCTAAA AAATTACATA 350 AACAGCTAGT CCATGCCGGA ACTTCAAGGC ATCAAGACAT AAAGAAGAAG ATCCAGTCCA 28580 | ||||||| |||||||||| | |||||||| |||||||||| ||| ||||| |||||||||| AGAAGCTAGT CCATGCCGGA AGTTCAAGGC ATCAAGACAT GAAGGAGAAG ATCCAGTCCA 410 AGCTAGAAGC TTTAGCTCAC CCTGAA-ATC TAGTGTGATG AAGACTGGCT AGAGTTGCGG 28521 |||||||||| ||||||||| |||||| ||| |||||| | |||||||||| ||||| | | AGCTAGAAGC GTTAGCTCAC CCTGAAGATC CGGTGTGACG AAGACTGGCT TGAGTTACTG 470 TTGGATTGAA GACGACGATA CGTTTGCTGC ACTCCACAAT GAACAAAAAG -AAAACATAC 28462 ||| | ||| || |||| | |||||||||| ||||||||| ||||| ||| |||||||| TTGAGTCGAA GATGACGGCA CGTTTGCTGC ACTCCACAAA TAACAAGAAG AAAAACATAA 530 AAGTAGGGGT CAGTAGAAAA CACGAGTACT GAGTAGATAT CATCGGCCAA 28412 |||||||||| ||||| |||| |||| |||| |||||||||| |||||||||| AAGTAGGGGT CAGTACAAAA CACGGCTACT GAGTAGATAT CATCGGCCAA 580 hqPGS_C04HBa0077O05.1-_SGN-E356206- (28994 28412) ******************************************************************************** EST sequence 160 +strand 434 n (File: SGN-E222578+) 1 TTTTTTTTTT TTTTTTTTTA ATAAAAACCA ATTCAATAAC TATCAATATT CAACATCTAT 61 TATTCCCAAA ACCTGGAAGT CATCATCACA AGAACATCTA CTTTAAACTA CTAATTCTAA 121 GAGTTTCTAA AAGCTAAAAA TACATAAGAA GCTAGTCCAT GCCGGAGGTT CAAGGCATCA 181 AGACATGAAG GAGAAGATCC AGTCCAAGCT AGACGCGTTA GCTCACCCTG AAGATCCGGT 241 GTGACGAAGA CTGGCTTGAG TTACTGTTGA GTCGAAGATG ACGGCACGTT TGCTGCACTC 301 CACAACTTTC TAGATGGGGA CTTTCTTCAA GGCTTCGAGA TGGAAACTTG CTTGCAGAGC 361 TTCGAGTGTT ACCAGCTTCA AGATGGAGTT TCAGTGATGA GGCTTGCTAG TCTCGAGTTT 421 TTTTTTTTTT TTTT Predicted gene structure (within gDNA segment 30726 to 25753): Exon 1 28772 28483 ( 290 n); cDNA 18 304 ( 287 n); score: 0.857 PPA cDNA 17 1 MATCH C04HBa0077O05.1- SGN-E222578+ 0.857 290 0.668 C PGS_C04HBa0077O05.1-_SGN-E222578+ (28772 28483) Alignment (genomic DNA sequence = upper lines): TTAATAAAAA CCAATTCAAT AACTTCTAAA AACTCAACAA CTATTATTAT CCCCAAAATC 28713 |||||||||| |||||||||| ||| | | || | |||||| ||||||| | ||||||| | TTAATAAAAA CCAATTCAAT AAC-TATCAA TATTCAACAT CTATTAT--T -CCCAAAACC 73 TGGAAGTCAT TATCACAAGA ACATCTACTT CAAATTACTA AATCTAAGAG TATCTAAGAA 28653 |||||||||| ||||||||| |||||||||| ||| ||||| | |||||||| | ||||| | TGGAAGTCAT CATCACAAGA ACATCTACTT TAAACTACTA ATTCTAAGAG TTTCTAAAAG 133 GTTAAAATAC ATAAACAGCT AGTCCATGCC GGAACTTCAA GGCATCAAGA CATAAAGAAG 28593 | ||||||| |||| |||| |||||||||| ||| ||||| |||||||||| ||| ||| || CTAAAAATAC ATAAGAAGCT AGTCCATGCC GGAGGTTCAA GGCATCAAGA CATGAAGGAG 193 AAGATCCAGT CCAAGCTAGA AGCTTTAGCT CACCCTGAA- ATCTAGTGTG ATGAAGACTG 28534 |||||||||| |||||||||| || |||||| ||||||||| ||| ||||| | |||||||| AAGATCCAGT CCAAGCTAGA CGCGTTAGCT CACCCTGAAG ATCCGGTGTG ACGAAGACTG 253 GCTAGAGTTG CGGTTGGATT GAAGACGACG ATACGTTTGC TGCACTCCAC A 28483 ||| ||||| | |||| | ||||| |||| |||||||| |||||||||| | GCTTGAGTTA CTGTTGAGTC GAAGATGACG GCACGTTTGC TGCACTCCAC A 304 hqPGS_C04HBa0077O05.1-_SGN-E222578+ (28772 28483) ******************************************************************************** EST sequence 288 +strand 710 n (File: SGN-E392027+) 1 CCACAGCCCC AGTGGCTGGC TCAGTCGCAC CCTGTCCCGC CGGTGCTGGT GTTGATGCTG 61 GCGTAGTCGT TGCTCTAGTT CTAACCATCT GCGAAATAGA GTGAAGATGG TCAGATACCA 121 ATTTGTATCA CCTAGATACC AATTGGACCC AAGTAATAGC ACGAAAGAAG AAAGAATGGA 181 ATTTTCCAAA AGTCTTATAG CCTCTCAAGG AAAAGTAAAG GCATCCCCCT ACCGTTCCTT 241 AAGACTCTAC TAGACTCGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 301 AGTTTGTCAC GACCAAAACC GGGTTGCGAC TGGCACCCAC ACTTACCCTC CTATGTGAGC 361 GAACCAACCA ATCTAACCTT AACATTTCAA TATAATATCA ACAGAAAGTA ATGTGGAAGA 421 CTTAAACTCA TTAAATACAG ACCAATTCAT TAACTTCTAA AATTCAACAT CTATTATTCC 481 CCAAAATCTG GAAGTCATCA CCACAAGAAC ATCTACGATC AAATGACTAA ACTAAGAGTA 541 GTCTAAAAGC TAAAAATACA TAAGAAGCTA GTCCATGCCG GAAGTTCAAG GCATCAAGAC 601 TTGAAGAAGA AGATCCAGTC CAAGCTAGAA GCATTAGCTC ACCCTGAATT TCCGATGTAG 661 TAAGACTGGC TTGAATTACT GTTGAGTTGA ACACGATGGC ACGTTTGCTG Predicted gene structure (within gDNA segment 30393 to 27180): Exon 1 29165 28492 ( 674 n); cDNA 44 710 ( 667 n); score: 0.897 MATCH C04HBa0077O05.1- SGN-E392027+ 0.897 674 0.949 C PGS_C04HBa0077O05.1-_SGN-E392027+ (29165 28492) Alignment (genomic DNA sequence = upper lines): TGCTGATGTT GATGTTGGCG CGGTCGTTGC TCTAGTTCTA ACCATCTGCG AAATAGAGTG 29106 ||||| |||| |||| ||||| |||||||| |||||||||| |||||||||| |||||||||| TGCTGGTGTT GATGCTGGCG TAGTCGTTGC TCTAGTTCTA ACCATCTGCG AAATAGAGTG 103 AAGATGGTCA GATACCAATT TGTATCACCT AGATACCAAT TGGATCCAAG TAATAACACA 29046 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ||||| ||| AAGATGGTCA GATACCAATT TGTATCACCT AGATACCAAT TGGACCCAAG TAATAGCAC- 162 AAAGAAAGAA AGAAAGAATG GAATTTTCCT AAAGTCTTAT AGCCTCTCAA AGAAAAGTAA 28986 ||||| | |||||||||| ||||||||| |||||||||| |||||||||| ||||||||| ---GAAAG-A AGAAAGAATG GAATTTTCCA AAAGTCTTAT AGCCTCTCAA GGAAAAGTAA 218 AGGCGTCCCC CTACCGTTCC TTAAGACTCT ACTAGACTCG TTCTTGTGTG ATGAGACCAA 28926 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCATCCCC CTACCGTTCC TTAAGACTCT ACTAGACTCG TTCTTGTGTG ATGAGACCAA 278 CGAACCTAAT GCTCTGATAC CAAGTTTGTC ACGACCCAAA TCGGGTCGCG ACTGGCACCC 28866 |||||||||| |||||||||| |||||||||| |||||| ||| ||||| ||| |||||||||| CGAACCTAAT GCTCTGATAC CAAGTTTGTC ACGACCAAAA CCGGGTTGCG ACTGGCACCC 338 ACACTTACCC TCCTATGTGA GCGAACCAAC CAATCTAAAC CTTAACATTT CAATATAATA 28806 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| ACACTTACCC TCCTATGTGA GCGAACCAAC CAATCT-AAC CTTAACATTT CAATATAATA 397 TCAACAGAAA GTAATGCGGA AGACTTAAAC TCATT-AATA AAAACCAATT CAATAACTTC 28747 |||||||||| |||||| ||| |||||||||| ||||| |||| | ||||||| || ||||||| TCAACAGAAA GTAATGTGGA AGACTTAAAC TCATTAAATA CAGACCAATT CATTAACTTC 457 TAAAAACTCA ACAACTATTA TTATCCCCAA AATCTGGAAG TCATTATCAC AAGAACATCT 28687 | |||| ||| ||| |||||| | ||||||| |||||||||| |||| | ||| |||||||||| T-AAAATTCA ACATCTATTA -T-TCCCCAA AATCTGGAAG TCATCACCAC AAGAACATCT 514 AC-TTCAAAT TACTAAATCT AAGAGTA-TC TAAGAAGTTA AAATACATAA ACAGCTAGTC 28629 || |||||| |||||| || ||||||| || ||| | | | |||||||||| |||||||| ACGATCAAAT GACTAAA-CT AAGAGTAGTC TAAAAGCTAA AAATACATAA GAAGCTAGTC 573 CATGCCGGAA CTTCAAGGCA TCAAGACATA AAGAAGAAGA TCCAGTCCAA GCTAGAAGCT 28569 |||||||||| ||||||||| ||||||| | |||||||||| |||||||||| ||||||||| CATGCCGGAA GTTCAAGGCA TCAAGACTTG AAGAAGAAGA TCCAGTCCAA GCTAGAAGCA 633 TTAGCTCACC CTGAAATCTA GTGTGATGAA GACTGGCTAG AGTTGCGGTT GGATTGAAGA 28509 |||||||||| ||||| | | | || |||||||| | | || | ||| | ||||| | TTAGCTCACC CTGAATTTCC GATGTAGTAA GACTGGCTTG AATTACTGTT GAGTTGAACA 693 CGACGATACG TTTGCTG 28492 ||| | ||| ||||||| CGATGGCACG TTTGCTG 710 hqPGS_C04HBa0077O05.1-_SGN-E392027+ (29165 28492) ******************************************************************************** EST sequence 234 +strand 840 n (File: SGN-E542084+) 1 TTTTTTTTTT TAGGGGAAAA TTTCTTACTT CTATAAATGT CACGACCCAA ATCGGATCGC 61 GACTGGCACC CACACTTACC CTGCTATGTG AGCGAACCAA CCAATCCAAA CCTTAACATT 121 TCAATGTAAT ATCAACATAA AGTAATGCGG AAGACTTAAA CTTATTAATG AAAACCAATT 181 CAATAACTAT TATTTCCCAA AATCTGGAAG TCATCATCAT AAGAACATCT ACTTCAAATT 241 ACTAAATCTA AGAGTTTCTA AGAAGCTAAA AAATACATAA AAGCTAGTCC ATGCCGGAAC 301 TTCAAGACAT CAAGACATGA AGAGGAAGAT CCAGTCCAAT CTAGAAAGCA TTAGCTCACC 361 CTGATATCCG AAGTAATGAA GACTGGCTAG AGTTACTGTT GAGTCGAAGA TGACGGCACG 421 TTTGCTAAAA TCAGTGGACG GAGGAGAAGG GAAAGCACAC CGGGAATGAG AAGAAGCTGA 481 AGGAGGAACC AAAGAGGAAT CCCATTGCAA AGTAAATGAG AGTGTAAGCT AGCAGACGCG 541 ATGGAAGAGC TTACGCAGAA ATAACACTCT CATTTGGTGA TTTAGTTTGG AGATCATCTG 601 AGACCTTCGT GTTGGACAAC ATCATCCATG AAGATGTCAT TAGAAAAGTT AGATGCTTTA 661 TATACATGTT GATAGTTCCT GACTACTCTA TTTCTTTTTC AGAAAGCCCC GAAATTTCTC 721 AGATGATAAA TGCTGTCTGT TTTGGAAAAC CATCTCTATG CAAAGATGAT GTTTGCTGCA 781 TTGAGGTGTC AATATTGGGA ATTTCAAGAA AATTATGCCT TGTAGAATAT GTACAGCAAC Predicted gene structure (within gDNA segment 29869 to 22202): Exon 1 28899 28493 ( 407 n); cDNA 38 426 ( 389 n); score: 0.856 PPA cDNA 11 1 MATCH C04HBa0077O05.1- SGN-E542084+ 0.856 407 0.485 C PGS_C04HBa0077O05.1-_SGN-E542084+ (28899 28493) Alignment (genomic DNA sequence = upper lines): TGTCACGACC CAAATCGGGT CGCGACTGGC ACCCACACTT ACCCTCCTAT GTGAGCGAAC 28840 |||||||||| |||||||| | |||||||||| |||||||||| ||||| |||| |||||||||| TGTCACGACC CAAATCGGAT CGCGACTGGC ACCCACACTT ACCCTGCTAT GTGAGCGAAC 97 CAACCAATCT AAACCTTAAC ATTTCAATAT AATATCAACA GAAAGTAATG CGGAAGACTT 28780 ||||||||| |||||||||| |||||||| | |||||||||| ||||||||| |||||||||| CAACCAATCC AAACCTTAAC ATTTCAATGT AATATCAACA TAAAGTAATG CGGAAGACTT 157 AAACTCATTA ATAAAAACCA ATTCAATAAC TTCTAAAAAC TCAACAACTA TTATTATCCC 28720 ||||| |||| || ||||||| ||||||||| || | | || || | || AAACTTATTA ATGAAAACCA ATTCAATAA- --CT----A- T-------TA TT----T-CC 197 CAAAATCTGG AAGTCATTAT CACAAGAACA TCTACTTCAA ATTACTAAAT CTAAGAGTAT 28660 |||||||||| ||||||| || || ||||||| |||||||||| |||||||||| |||||||| | CAAAATCTGG AAGTCATCAT CATAAGAACA TCTACTTCAA ATTACTAAAT CTAAGAGTTT 257 CTAAGAAG-T -TAAAATACA TAAACAGCTA GTCCATGCCG GAACTTCAAG GCATCAAGAC 28602 |||||||| | |||||||| |||| ||||| |||||||||| |||||||||| ||||||||| CTAAGAAGCT AAAAAATACA TAAA-AGCTA GTCCATGCCG GAACTTCAAG ACATCAAGAC 316 ATAAAGAAGA AGATCCAGTC CAAGCTAG-A AGCTTTAGCT CACCCTGAAA TCTAGTGTGA 28543 || |||| || |||||||||| ||| |||| | ||| |||||| |||||||| | || || | ATGAAGAGGA AGATCCAGTC CAATCTAGAA AGCATTAGCT CACCCTGATA TCCGAAGTAA 376 TGAAGACTGG CTAGAGTTGC GGTTGGATTG AAGACGACGA TACGTTTGCT 28493 |||||||||| |||||||| | |||| | | |||| |||| ||||||||| TGAAGACTGG CTAGAGTTAC TGTTGAGTCG AAGATGACGG CACGTTTGCT 426 hqPGS_C04HBa0077O05.1-_SGN-E542084+ (28899 28493) ******************************************************************************** EST sequence 158 +strand 679 n (File: SGN-E370357+) 1 TTTTTTTTTT CTTACAATTA TATTATGAAT TCGATAATCT TTAATGTCAC GACCCAAATC 61 GAGCCGCAAG TGGCACCCAC ACTTACCCTC CTATGTGAGC GAACCAACCA ATACAAAATC 121 CAACATTTCA ATATAATGAC GGAATATAAT GCGGAAGACT TAAACTCATT AATGAAAATC 181 AATTAAATAA CTTCTAAAAA CTCAACAACT ATTATTATCC CCAAAATCTG GAAGTCATCA 241 TCACAAGAAC ATCTATCCTC AAATTACTAA TTCTAAGAGT ATCTAGAAAG CTAGAATAAC 301 TAAAAAGCTA GTCCATGCCG GAACTTCAAG GCATCAAGAC ATGAAGAAGA AGATCCAGTC 361 CAAGCTAGAA GCGTTAGCTC ACACTGAAAT CCGGTATAAT GAAGACTGGC TAGAGTTGCG 421 GTTGAGTTGA AGACGACGGT ACGTTTGCTT TATTCGAGTG TCAATTAATC ATTCGGCTGT 481 CACCCAAATA TTATTGATTG ATTACACCTC TGCCATTTGT AAAATTTTTC AAATTTGCCT 541 ACGGATGCAG AATTTTCCTC GAATTTCTGA TGTGTTTTCT TGTAAATAGT GGCCATTTGT 601 GTAAGTAAAT GCCCATTTCT CCTCCTACAA AGTCCAATTC CATTTTTCCC CCAATCCACC 661 ATGGCAACAC CACCTCCAA Predicted gene structure (within gDNA segment 29939 to 24890): Exon 1 28899 28493 ( 407 n); cDNA 45 449 ( 405 n); score: 0.896 PPA cDNA 13 1 MATCH C04HBa0077O05.1- SGN-E370357+ 0.896 407 0.599 C PGS_C04HBa0077O05.1-_SGN-E370357+ (28899 28493) Alignment (genomic DNA sequence = upper lines): TGTCACGACC CAAATCGGGT CGCGACTGGC ACCCACACTT ACCCTCCTAT GTGAGCGAAC 28840 |||||||||| ||||||| | ||| | |||| |||||||||| |||||||||| |||||||||| TGTCACGACC CAAATCGAGC CGCAAGTGGC ACCCACACTT ACCCTCCTAT GTGAGCGAAC 104 CAACCAATCT AAACCTTAAC ATTTCAATAT AATATCAACA GAAAGTAATG CGGAAGACTT 28780 |||||||| ||| ||| |||||||||| | || || ||| ||||| |||||||||| CAACCAATAC AAAATCCAAC ATTTCAATAT -A-AT-GACG GAATATAATG CGGAAGACTT 161 AAACTCATTA ATAAAAACCA ATTCAATAAC TTCTAAAAAC TCAACAACTA TTATTATCCC 28720 |||||||||| || |||| || ||| |||||| |||||||||| |||||||||| |||||||||| AAACTCATTA ATGAAAATCA ATTAAATAAC TTCTAAAAAC TCAACAACTA TTATTATCCC 221 CAAAATCTGG AAGTCATTAT CACAAGAACA TCTA-CTTCA AATTACTAAA TCTAAGAGTA 28661 |||||||||| ||||||| || |||||||||| |||| | ||| ||||||||| |||||||||| CAAAATCTGG AAGTCATCAT CACAAGAACA TCTATCCTCA AATTACTAAT TCTAAGAGTA 281 TCTAAGAAGT TAAAATACAT AAACAGCTAG TCCATGCCGG AACTTCAAGG CATCAAGACA 28601 |||| ||| || |||| | ||| |||||| |||||||||| |||||||||| |||||||||| TCTAGAAAGC TAGAATAACT AAAAAGCTAG TCCATGCCGG AACTTCAAGG CATCAAGACA 341 TAAAGAAGAA GATCCAGTCC AAGCTAGAAG CTTTAGCTCA CCCTGAAATC TAGTGTGATG 28541 | |||||||| |||||||||| |||||||||| | |||||||| | |||||||| || | ||| TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CGTTAGCTCA CACTGAAATC CGGTATAATG 401 AAGACTGGCT AGAGTTGCGG TTGGATTGAA GACGACGATA CGTTTGCT 28493 |||||||||| |||||||||| ||| ||||| ||||||| || |||||||| AAGACTGGCT AGAGTTGCGG TTGAGTTGAA GACGACGGTA CGTTTGCT 449 hqPGS_C04HBa0077O05.1-_SGN-E370357+ (28899 28493) ******************************************************************************** EST sequence 60 -strand 405 n (File: SGN-E336814-) 1 TTTTTTTTTT TAATAAAATC AATAACTATT ATTATCCCCA AAATCTGGAA GTCATCACCA 61 CAAGAACATC TATGATCAAA GTACTAAACT AAGAGTGTTC TAAAAAGCTA AAATACAAGA 121 AAGCTAGTCC ATGCCGGAAC TTCAAGACAT CAAGACATGA AGAGGAAGAT CCAGTCCAAG 181 CTAGAAACAT TAGCTCACCT TAATATCCGG AATAATGAAG ACTGGCTAGA GTTACTGTTG 241 AGTCGAAGAT GACGGCACGT TTGCTCTCTT GTGTGATTTG CAAGCTATTG CAAAGGAGTA 301 GTTGCGGGTT TCCTTGTCAT AAAAAATAAT GCAAGGGAAA GCAGAAGATA ATGAAAATTA 361 GCAATATGTC AATCCATGAT CATGAAGTGC TTTGTTTGCT TTGGG Predicted gene structure (within gDNA segment 29574 to 25782): Exon 1 28749 28493 ( 257 n); cDNA 9 265 ( 257 n); score: 0.833 MATCH C04HBa0077O05.1- SGN-E336814- 0.833 257 0.635 C PGS_C04HBa0077O05.1-_SGN-E336814- (28749 28493) Alignment (genomic DNA sequence = upper lines): TTCTAAAAAC TCAACAACTA TTATTATCCC CAAAATCTGG AAGTCATTAT CACAAGAACA 28690 || | ||| |||| ||||| |||||||||| |||||||||| ||||||| | |||||||||| TTTAATAAAA TCAATAACTA TTATTATCCC CAAAATCTGG AAGTCATCAC CACAAGAACA 68 TCTA-CTTCA AATTACTAAA TCTAAGAGT- ATCTAAGAAG TTAAAATACA TAAACAGCTA 28632 |||| ||| || ||||||| |||||||| ||||| ||| ||||||||| | | ||||| TCTATGATCA AAGTACTAAA -CTAAGAGTG TTCTAAAAAG CTAAAATACA -AGAAAGCTA 126 GTCCATGCCG GAACTTCAAG GCATCAAGAC ATAAAGAAGA AGATCCAGTC CAAGCTAGAA 28572 |||||||||| |||||||||| ||||||||| || |||| || |||||||||| |||||||||| GTCCATGCCG GAACTTCAAG ACATCAAGAC ATGAAGAGGA AGATCCAGTC CAAGCTAGAA 186 GCTTTAGCTC ACCCTGAAAT CTAGTGTGAT GAAGACTGGC TAGAGTTGCG GTTGGATTGA 28512 | ||||||| ||| | | || | | | || |||||||||| ||||||| | |||| | || ACATTAGCTC ACCTTAATAT CCGGAATAAT GAAGACTGGC TAGAGTTACT GTTGAGTCGA 246 AGACGACGAT ACGTTTGCT 28493 ||| |||| ||||||||| AGATGACGGC ACGTTTGCT 265 hqPGS_C04HBa0077O05.1-_SGN-E336814- (28749 28493) ******************************************************************************** EST sequence 39 -strand 299 n (File: SGN-E373117-) 1 TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGA AGTCATCATC 61 ACAAGAACAT CTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 121 ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 181 GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGAA GACTGGCTAG AGTTGCGGTT 241 GAGTTGAAGA CGACGGTACG TTTGCCAAAA TTACGACAGT ATTTGGACAA GCTAGAAGA Predicted gene structure (within gDNA segment 29449 to 27338): Exon 1 28758 28496 ( 263 n); cDNA 1 263 ( 263 n); score: 0.935 MATCH C04HBa0077O05.1- SGN-E373117- 0.935 263 0.880 C PGS_C04HBa0077O05.1-_SGN-E373117- (28758 28496) Alignment (genomic DNA sequence = upper lines): TTCAATAACT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGA AGTCATTATC 28699 || | | |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGA AGTCATCATC 60 ACAAGAACAT CTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGTTA AAATACATAA 28639 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| ACAAGAACAT CTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 120 ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATA AAGAAGAAGA TCCAGTCCAA 28579 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 180 GCTAGAAGCT TTAGCTCACC CTGAAATCTA GTGTGATGAA GACTGGCTAG AGTTGCGGTT 28519 ||||||||| |||||||||| |||||||| ||| ||||| |||||||||| |||||||||| GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGAA GACTGGCTAG AGTTGCGGTT 240 GGATTGAAGA CGACGATACG TTT 28496 | ||||||| ||||| |||| ||| GAGTTGAAGA CGACGGTACG TTT 263 hqPGS_C04HBa0077O05.1-_SGN-E373117- (28758 28496) ******************************************************************************** EST sequence 213 +strand 299 n (File: SGN-E373116+) 1 TTTTTTTTTT CTAAAAACTC AACAACTATT ATTATCCCCA AAATCTGGAA GTCATCATCA 61 CAAGAACATC TACTTCAAAT TACTAAATCT AAGAGTATCT AAGAAGCTAA AATACATAAA 121 CAGCTAGTCC ATGCCGGAAC TTCAAGGCAT CAAGACATGA AGAAGAAGAT CCAGTCCAAG 181 CTAGAAGCGT TAGCTCACCC TGAAATCCGA TGTAATGAAG ACTGGCTAGA GTTGCGGTTG 241 AGTTGAAGAC GACGGTACGT TTGCCAAAAT TACGACAGTA TTTGGACAAG CTAGAAGAG Predicted gene structure (within gDNA segment 29429 to 27318): Exon 1 28749 28496 ( 254 n); cDNA 9 262 ( 254 n); score: 0.957 MATCH C04HBa0077O05.1- SGN-E373116+ 0.957 254 0.849 C PGS_C04HBa0077O05.1-_SGN-E373116+ (28749 28496) Alignment (genomic DNA sequence = upper lines): TTCTAAAAAC TCAACAACTA TTATTATCCC CAAAATCTGG AAGTCATTAT CACAAGAACA 28690 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| TTCTAAAAAC TCAACAACTA TTATTATCCC CAAAATCTGG AAGTCATCAT CACAAGAACA 68 TCTACTTCAA ATTACTAAAT CTAAGAGTAT CTAAGAAGTT AAAATACATA AACAGCTAGT 28630 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TCTACTTCAA ATTACTAAAT CTAAGAGTAT CTAAGAAGCT AAAATACATA AACAGCTAGT 128 CCATGCCGGA ACTTCAAGGC ATCAAGACAT AAAGAAGAAG ATCCAGTCCA AGCTAGAAGC 28570 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CCATGCCGGA ACTTCAAGGC ATCAAGACAT GAAGAAGAAG ATCCAGTCCA AGCTAGAAGC 188 TTTAGCTCAC CCTGAAATCT AGTGTGATGA AGACTGGCTA GAGTTGCGGT TGGATTGAAG 28510 ||||||||| ||||||||| ||| |||| |||||||||| |||||||||| || |||||| GTTAGCTCAC CCTGAAATCC GATGTAATGA AGACTGGCTA GAGTTGCGGT TGAGTTGAAG 248 ACGACGATAC GTTT 28496 |||||| ||| |||| ACGACGGTAC GTTT 262 hqPGS_C04HBa0077O05.1-_SGN-E373116+ (28749 28496) ******************************************************************************** EST sequence 297 +strand 265 n (File: SGN-E216150+) 1 TTTTTTTTTT TTTTTTTTAA TAAAAATCAA TAATCAACTT GTATAACTCA AAACTTATCA 61 TTCCCCAAAA TCTGGAAGTC ATCATCACCA GAGCCTCTAT CATAAAATTA CTAAACTAAG 121 AGTATTCTAA GAAGCTAAAA ATACATACGA AGCTAGTCCA TGCCGGAAGT TCAAGGCATC 181 AAGACTTGAA GAAGAAGATC CAGTCAAACC TAGAAGCATT AGCTCACCCT GAATTTCCGA 241 TGTAGTAGGA CTGGCTTGAG TTACT Predicted gene structure (within gDNA segment 30736 to 27372): Exon 1 28723 28525 ( 199 n); cDNA 62 262 ( 201 n); score: 0.817 PPA cDNA 18 1 MATCH C04HBa0077O05.1- SGN-E216150+ 0.817 199 0.751 C PGS_C04HBa0077O05.1-_SGN-E216150+ (28723 28525) Alignment (genomic DNA sequence = upper lines): TCCCCAAAAT CTGGAAGTCA TTATCACAAG AACATCTA-C TTCAAATTAC TAAATCTAAG 28665 |||||||||| |||||||||| | ||||| || | | |||| | | ||||||| |||| ||||| TCCCCAAAAT CTGGAAGTCA TCATCACCAG AGCCTCTATC ATAAAATTAC TAAA-CTAAG 120 AGTA-TCTAA GAAG-TTAAA ATACATAAAC AGCTAGTCCA TGCCGGAACT TCAAGGCATC 28607 |||| ||||| |||| | ||| ||||||| |||||||||| |||||||| | |||||||||| AGTATTCTAA GAAGCTAAAA ATACATACGA AGCTAGTCCA TGCCGGAAGT TCAAGGCATC 180 AAGACATAAA GAAGAAGATC CAGTCCAAGC TAGAAGCTTT AGCTCACCCT GAAATCTAGT 28547 ||||| | || |||||||||| ||||| || | ||||||| || |||||||||| ||| | | AAGACTTGAA GAAGAAGATC CAGTCAAACC TAGAAGCATT AGCTCACCCT GAATTTCCGA 240 GTGATGAAGA CTGGCTAGAG TT 28525 | | || |||||| ||| || TGTAGTAGGA CTGGCTTGAG TT 262 hqPGS_C04HBa0077O05.1-_SGN-E216150+ (28723 28525) ******************************************************************************** EST sequence 86 -strand 219 n (File: SGN-E298638-) 1 TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGC AGTCATCATC 61 ACAAGAACAT GTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 121 ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 181 GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGA Predicted gene structure (within gDNA segment 29449 to 27841): Exon 1 28758 28540 ( 219 n); cDNA 1 219 ( 219 n); score: 0.927 MATCH C04HBa0077O05.1- SGN-E298638- 0.927 219 1.000 C PGS_C04HBa0077O05.1-_SGN-E298638- (28758 28540) Alignment (genomic DNA sequence = upper lines): TTCAATAACT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGA AGTCATTATC 28699 || | | |||||||||| |||||||||| |||||||||| ||||||||| |||||| ||| TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGC AGTCATCATC 60 ACAAGAACAT CTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGTTA AAATACATAA 28639 |||||||||| ||||||||| |||||||||| |||||||||| ||||||| || |||||||||| ACAAGAACAT GTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 120 ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATA AAGAAGAAGA TCCAGTCCAA 28579 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 180 GCTAGAAGCT TTAGCTCACC CTGAAATCTA GTGTGATGA 28540 ||||||||| |||||||||| |||||||| ||| |||| GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGA 219 hqPGS_C04HBa0077O05.1-_SGN-E298638- (28758 28540) ******************************************************************************** EST sequence 114 -strand 666 n (File: SGN-E368629-) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTATAA AAACCAATTC AATAACTATT ATTTCCCAAA 61 ATCTGGAAGT TATCATCACA AGAACATCTA CTTCGAATTA CTAAATCTAG AAGTATCTAA 121 GAGCCTAAAA TACATAACAC AGTTAGTCCA TGCCGAAACT TCAAGGCATC AAGACATAAA 181 GAAGAAGATC CAGTCCAAGC TAGAAGCTTT GTTTTATCGA AAAAAGGTGA TTTTTCGAAA 241 AGAGTTTGTT TTATTTTAAA GTATTTTTCG ACTTTAGGAG TCGCCACTTA ATTTTTAAGA 301 AAAATCAAGA AAACTCATTC TCAAAACAAT TTAAACAGAA AAGTCGTTTT GAAAATATTT 361 TTTAGGATTC GGGATTCTTA TTAGCGTCTT AGGAAGGTGT TTAAGGCACC TAAGACACTC 421 CGTTAAATAC GGTTTTCCAA CGACTAACTT ATTTGATTAT TTTTATTTTT ACCCTTTGCA 481 AATTTATTTG AACTTTTATC ACGATTTACT TAGCCAAACT TTGCAAATTT GAGATATTAA 541 TCTTTTAAGA TTCCGTCTTA GTTAAACTTT CTAAGCCTTA ACTCTCTAAG CAGACTTTCA 601 AATTTTAAAC CTCTATCGTT TCAAAACTTC AATTTTTATT TTTTAGTTTC ATAAAGCAAA 661 AGGCGT Predicted gene structure (within gDNA segment 30790 to 23407): Exon 1 28739 28566 ( 174 n); cDNA 39 211 ( 173 n); score: 0.905 Intron 1 28565 25003 (3563 n); Pd: 0.000 (s: 0.98), Pa: 0.000 (s: 0) Exon 2 25002 24992 ( 11 n); cDNA 212 222 ( 11 n); score: 0.909 PPA cDNA 28 1 MATCH C04HBa0077O05.1- SGN-E368629- 0.905 185 0.278 C PGS_C04HBa0077O05.1-_SGN-E368629- (28739 28566,25002 24992) Alignment (genomic DNA sequence = upper lines): TCAACAACTA TTATTATCCC CAAAATCTGG AAGTCATTAT CACAAGAACA TCTACTTCAA 28680 |||| ||||| ||||| | || |||||||||| |||| || || |||||||||| |||||||| | TCAATAACTA TTATT-T-CC CAAAATCTGG AAGTTATCAT CACAAGAACA TCTACTTCGA 96 ATTACTAAAT CTAAGAGTAT CTAAGAAGTT AAAATACATA A-ACAGCTAG TCCATGCCGG 28621 |||||||||| ||| ||||| |||||| | |||||||||| | |||| ||| ||||||||| ATTACTAAAT CTAGAAGTAT CTAAGAGCCT AAAATACATA ACACAGTTAG TCCATGCCGA 156 AACTTCAAGG CATCAAGACA TAAAGAAGAA GATCCAGTCC AAGCTAGAAG CTTTAGCTCA 28561 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| AACTTCAAGG CATCAAGACA TAAAGAAGAA GATCCAGTCC AAGCTAGAAG CTTTG..... 211 CCCTGAAATC TAGTGTGATG AAGACTGGCT AGAGTTGCGG TTGGATTGAA GACGACGATA 28501 .......... .......... .......... .......... .......... .......... 211 CGTTTGCTGC ACTCCACAAT GAACAAAAAG AAAACATACA AGTAGGGGTC AGTAGAAAAC 28441 .......... .......... .......... .......... .......... .......... 211 ACGAGTACTG AGTAGATATC ATCGGCCAAC TCAAAATAGA AAACAGTATA TATCAGATAA 28381 .......... .......... .......... .......... .......... .......... 211 TATCATAAAA TCAACTACAG TACTTAACAT GCAACATTTA CAATTACCAT AACCCTTGGT 28321 .......... .......... .......... .......... .......... .......... 211 CATAACACCA AACTCATCAA TGAGGACTCA CACCTCCCCA TCATACTCAT TTGGGAATTA 28261 .......... .......... .......... .......... .......... .......... 211 GGTTCATTAA ATTAAGTATA TTAACATATT TCAAGATTCA TTCTCTTTAC TAATCCTGGT 28201 .......... .......... .......... .......... .......... .......... 211 GCCGGAACGT GACACTCCGA TCCTCATATA CTATCCTGGT ACCAGAATGT GGCACCCGAT 28141 .......... .......... .......... .......... .......... .......... 211 CCATATACTA TCCTGGTGTC GGAACGTGAC ACTCCGATCC TCATAAACTA TCCTGGTACC 28081 .......... .......... .......... .......... .......... .......... 211 GGAACGTGGC ACCCGATCCA TATACTATCC TGGTGTCGGA ACGTGACACC CGATCCATAT 28021 .......... .......... .......... .......... .......... .......... 211 ACTATCCTGG TGTCGGAACT TGACACTCCG ATCCTCACAT ACTATCCTGG TACCGGAACG 27961 .......... .......... .......... .......... .......... .......... 211 TGGCACCCGA TCCATATACT ATTCTGGTGT CGGAACGTGA CACTCCGATC CTCATATACT 27901 .......... .......... .......... .......... .......... .......... 211 ATCCTGGTAC CGGAACGTGG CACCCGATCC CCTAATCTCA CTACTTTCGT TCATCAAGCC 27841 .......... .......... .......... .......... .......... .......... 211 TTCTTTTATA CCAAGGCATC ATCATTAACA AAGTAGATTA GGGCTTTTCA AGATTTAAGA 27781 .......... .......... .......... .......... .......... .......... 211 TTCAAGAGCT TCATCATGCT TATTCATCAC AATTATATAA TCACATCATG TAAGGATACA 27721 .......... .......... .......... .......... .......... .......... 211 ATTAATCACA TAGAAGGGTT TACAACACTA CCCAATACAT ATCATTCGCT ATTAAGAGTT 27661 .......... .......... .......... .......... .......... .......... 211 TACTACGAAT AGTATAAAAA CCATAACCTA CCTCCACCGA AGATTAGTGA TCAAGCAAGC 27601 .......... .......... .......... .......... .......... .......... 211 AAATTCCCCA AAGCTTTGTA TTTTCCTCTT CTCGTTCGAT CCTCTCTCTC TCTTTGTTCT 27541 .......... .......... .......... .......... .......... .......... 211 TTCTATTTTC TTTATTCAAA CCCTCTTTCT TTTACCCTAA TTAGCATATA ATTAAGAATA 27481 .......... .......... .......... .......... .......... .......... 211 AAAGATGGCA ATAATAACCC ACTAATTTAC TCAAGGTTAC CTCTTTTAAC CCCCAAGTAA 27421 .......... .......... .......... .......... .......... .......... 211 TTAGACTTAT TAACATTAAC CCACTAACTT TATAATTAAA ACAGGAATAG TCAAAAACTT 27361 .......... .......... .......... .......... .......... .......... 211 CCTTTAAAAC ATTAAAGAAA TCCGACTCAG CCTGGGATTA CGCAGCCTGT GACGGCCTGT 27301 .......... .......... .......... .......... .......... .......... 211 CATGCCTGCG ACGGTCCGTC CTGCTGCTCC GTCACAGAGT TCAGAGACTC AATTCCCTTA 27241 .......... .......... .......... .......... .......... .......... 211 AAGAGTCTGT GACGGTCCGT CACGCCTGTG ACGGTCCGTC CTGCCATTCC GTTACGAAGT 27181 .......... .......... .......... .......... .......... .......... 211 TTAGAGAGTC GATTTCAGTA CCCATTTTTC AGAATTTCAA AGTGTTTTGA AACGAGACCC 27121 .......... .......... .......... .......... .......... .......... 211 CCTCGACGGT CCGTCGTGCC CATGACGGTC CGTCGTGGAA TCCGTCGTCT CAGCCAGTTT 27061 .......... .......... .......... .......... .......... .......... 211 TCCAGAAATA ACATCTCTTG CTCAAAACGA CTAAACAGGT CGTTACAATA AATATTAGGT 27001 .......... .......... .......... .......... .......... .......... 211 ATAATAGATA AATTTATCAT TTTACCTGAT CTTATTTCAC ATGTATGTCA TCTATTTTTA 26941 .......... .......... .......... .......... .......... .......... 211 GGTGTGTATA AATAGATATT TAAATTAAAT TTGTATAAAG TTGAAGTAGA CACTGAATTC 26881 .......... .......... .......... .......... .......... .......... 211 TACGAGACAT AATACAAGTA AGAGATCTAG GACGCAAATT GTCATGTAAG ATGACACGCA 26821 .......... .......... .......... .......... .......... .......... 211 AAAATGTGTG TATTTATTTA TTCAACGAAT TTATAGAAAT ATAAGTATCT ACTCGTGCAC 26761 .......... .......... .......... .......... .......... .......... 211 ACTCAAAAAT AAAGAATATA AATATAAGTG ATAAGAGCAT ATTTATATAT TATGTCTAAC 26701 .......... .......... .......... .......... .......... .......... 211 TATTAATTTG ATGTCCGTTG ATCACATAAA AATTGAACCA AATGAATCAT TTCCTACTTA 26641 .......... .......... .......... .......... .......... .......... 211 TTCTTAATAT ACTTAAATTA GTTATCTTCC ATTATAACAT ATACAATTCA TTCATTATTC 26581 .......... .......... .......... .......... .......... .......... 211 GTAACTATCC TTTGTAAATA TAGGTGCATC GTATGTTTAA TATATGGATG AAATATTAAT 26521 .......... .......... .......... .......... .......... .......... 211 GAAGATGTAT AAATTTTATA CGAGAGTTAT ACCATTAAAA TTAAAATTTA TAATGCTTGG 26461 .......... .......... .......... .......... .......... .......... 211 TATAAAATTA TACCAAGAAA AATGTTTTGC ATGAATATCA TCTTAAACAA AACAACACAC 26401 .......... .......... .......... .......... .......... .......... 211 AAATATGCAA TTCGAATGTG CATAGAACCA AATATCCCAT AAATTTAAGG TCAATGAGCT 26341 .......... .......... .......... .......... .......... .......... 211 AGAGTTCACC CAGGCAAGCA GCCTTATTTC CCCCCCCAAA TTTAGGCCTT ATTTTTTTTC 26281 .......... .......... .......... .......... .......... .......... 211 TTTAAGATTA ACATGTCTGA ATTTGAATAA ACATTTGAAT AATTTTGTGT CTAAGTTTAA 26221 .......... .......... .......... .......... .......... .......... 211 ACATTAAATG ATTAATATTA TTTATTTTTT ATCATCTGAA TATGAGTAAT TATTTATAAT 26161 .......... .......... .......... .......... .......... .......... 211 TAAACATTAT AAATATATAA TTTAAAATAA GAAAGTAATT AACCATCGTT TTTTTTTTTC 26101 .......... .......... .......... .......... .......... .......... 211 TCAAAGCATA TTTAAAAAGA GGAGGTTGTT CGATTTTGTA ACTACACAAT TAAGAATAAA 26041 .......... .......... .......... .......... .......... .......... 211 ACGGTACTTG CCGATGATAA AATATCTACT TTGAATGCTC TTCTTTCAAA AATTAGTGTG 25981 .......... .......... .......... .......... .......... .......... 211 TATAATGAAT TTTTTTTAAA AAAAAGATAT ATTTACATTA GATATGATGC AGTTAAACAG 25921 .......... .......... .......... .......... .......... .......... 211 TTATTGAAAC ATGAGGTTAT TTTCTTAGAA TGTGTAAGGT CCTAAAAGTT ATTTGTAATC 25861 .......... .......... .......... .......... .......... .......... 211 TTTTAACTAA GGAATTTGAC TTGAAAATGA ATAAATGGTC TTTACCTCGA AGGAGATGAA 25801 .......... .......... .......... .......... .......... .......... 211 ACGGGATGGT GCTAAAGCCC ATTGATTGAG ATAATATGAC ACAAGGCCAT ATTTTTTGAT 25741 .......... .......... .......... .......... .......... .......... 211 GCAGATAGTA GGGGCGATTC AACTCTAAAG CCACTAAAGT AATGACTTTA GGCTTCCAAA 25681 .......... .......... .......... .......... .......... .......... 211 ATATAACGCC TCAAATTTAT TTAATGTTAC AGATATACAA ATATAAATAT ACTTATAATT 25621 .......... .......... .......... .......... .......... .......... 211 ATGTATCTAT AATTAGTATT AATTGAAATT TTCTTAATAG TTTCTAATCA TGGGCGAATC 25561 .......... .......... .......... .......... .......... .......... 211 CACATGTAAA GGTGGGGTGT ACGTCCACTC GTTAACTTCG AAAAATCATG TATAAATATA 25501 .......... .......... .......... .......... .......... .......... 211 TATATATTGA GAAACTGATA AGGAAAAAAA ATATAATAAA AAATGCAACC TTAATGAACA 25441 .......... .......... .......... .......... .......... .......... 211 TTGAACTGGT CTTGATTTGC TGATAGAAAT AAGAAAATAC CTCCTTGCAG ACCTAGATTT 25381 .......... .......... .......... .......... .......... .......... 211 CAATCCTGAT CAATAAGTCA CTATCCTATT CAAATCTTGG CTTCGCCTAT ATTTTGTGTT 25321 .......... .......... .......... .......... .......... .......... 211 AAATTTGAAC ACTAAGAGCC TGTTTGGCTC AGCTTAAAAG CTGGTCAAAC TGACTTAAAA 25261 .......... .......... .......... .......... .......... .......... 211 GCTGGTTTTT GACTTATTTA GTTGTTTGGC AATACTCAAA ATAACTTACT TTAAGTTAAA 25201 .......... .......... .......... .......... .......... .......... 211 AAAAACTTAT TTTAAGCCAA AAGTTAAAAA CTGGGGTAGG GGTGTTTTTT TTTTTTAGCT 25141 .......... .......... .......... .......... .......... .......... 211 TATAAGCTGT TTTAAGTTGA CCACATTTTT ATCTTTTTGC CATTAATATT TTTATGCAAT 25081 .......... .......... .......... .......... .......... .......... 211 CTCCAAATTA CTCATATAAC TCTAACATCT CTTTCTTCCA TTTTTCCCTT TTCACGTTTG 25021 .......... .......... .......... .......... .......... .......... 211 ATATAACAAC TTCAGCACTT TTATCCAAA 24992 || ||||| ||| .......... ........TT TTATCGAAA 222 hqPGS_C04HBa0077O05.1-_SGN-E368629- (28739 28566) ******************************************************************************** EST sequence 107 -strand 620 n (File: SGN-E238551-) 1 CTATTATTTC CCAAAATCTG GAAGTTATCA TCACAAGAAC ATCTACTTCG AATTACTAAA 61 TCTAAGAGTA TCTAAGAAGC TAAAATACAT AAACAGCTAG TCCATGCCGG AACTTCAAGG 121 CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CTTTGTTTTA TCGAAAAAAG 181 GTGATTTTTC GAAAAGAGTT TGTTTTATTT TAAAGTATTT TTCGACTTTA GGAGTCGCCA 241 CTTAATTTTT AAGAAAAATC AAGAAAACTC ATTCTCAAAA CAATTTAAAC AGAAAAGTCG 301 TTTTGAAAAT ATTTTTTAGG ATTCGGGATT CTTATTAGCG TCTTAGGAAG GTGTTTAAGG 361 CACCTAAGAC ACTCCGTTAA ATACGGTTTT CCAACGACTA ACTTATTTGA TTATTTTTAT 421 TTTTACCCTT TGCAAATTTA TTTGAACTTT TATCACGATT TACTTAGCCA AACTTTGCAA 481 ATTTGAGATA TTAATCTTTT AAGATTCCGT CTTAGTTAAA CTTTCTAAGC CTTAACTCTC 541 TAAGCAGACT TTCAAATTTT AAACCTCTAT CGTTTCAAAA CTTCAATTTT TATTTTTTAG 601 TTTCATAAAG CAAAAGGCGT Predicted gene structure (within gDNA segment 29601 to 23407): Exon 1 28732 28566 ( 167 n); cDNA 1 165 ( 165 n); score: 0.952 Intron 1 28565 25003 (3563 n); Pd: 0.000 (s: 0.96), Pa: 0.000 (s: 0) Exon 2 25002 24992 ( 11 n); cDNA 166 176 ( 11 n); score: 0.909 MATCH C04HBa0077O05.1- SGN-E238551- 0.952 178 0.287 C PGS_C04HBa0077O05.1-_SGN-E238551- (28732 28566,25002 24992) Alignment (genomic DNA sequence = upper lines): CTATTATTAT CCCCAAAATC TGGAAGTCAT TATCACAAGA ACATCTACTT CAAATTACTA 28673 |||||||| | ||||||||| ||||||| || ||||||||| |||||||||| | |||||||| CTATTATT-T -CCCAAAATC TGGAAGTTAT CATCACAAGA ACATCTACTT CGAATTACTA 58 AATCTAAGAG TATCTAAGAA GTTAAAATAC ATAAACAGCT AGTCCATGCC GGAACTTCAA 28613 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| AATCTAAGAG TATCTAAGAA GCTAAAATAC ATAAACAGCT AGTCCATGCC GGAACTTCAA 118 GGCATCAAGA CATAAAGAAG AAGATCCAGT CCAAGCTAGA AGCTTTAGCT CACCCTGAAA 28553 |||||||||| ||| |||||| |||||||||| |||||||||| |||||| GGCATCAAGA CATGAAGAAG AAGATCCAGT CCAAGCTAGA AGCTTTG... .......... 165 TCTAGTGTGA TGAAGACTGG CTAGAGTTGC GGTTGGATTG AAGACGACGA TACGTTTGCT 28493 .......... .......... .......... .......... .......... .......... 165 GCACTCCACA ATGAACAAAA AGAAAACATA CAAGTAGGGG TCAGTAGAAA ACACGAGTAC 28433 .......... .......... .......... .......... .......... .......... 165 TGAGTAGATA TCATCGGCCA ACTCAAAATA GAAAACAGTA TATATCAGAT AATATCATAA 28373 .......... .......... .......... .......... .......... .......... 165 AATCAACTAC AGTACTTAAC ATGCAACATT TACAATTACC ATAACCCTTG GTCATAACAC 28313 .......... .......... .......... .......... .......... .......... 165 CAAACTCATC AATGAGGACT CACACCTCCC CATCATACTC ATTTGGGAAT TAGGTTCATT 28253 .......... .......... .......... .......... .......... .......... 165 AAATTAAGTA TATTAACATA TTTCAAGATT CATTCTCTTT ACTAATCCTG GTGCCGGAAC 28193 .......... .......... .......... .......... .......... .......... 165 GTGACACTCC GATCCTCATA TACTATCCTG GTACCAGAAT GTGGCACCCG ATCCATATAC 28133 .......... .......... .......... .......... .......... .......... 165 TATCCTGGTG TCGGAACGTG ACACTCCGAT CCTCATAAAC TATCCTGGTA CCGGAACGTG 28073 .......... .......... .......... .......... .......... .......... 165 GCACCCGATC CATATACTAT CCTGGTGTCG GAACGTGACA CCCGATCCAT ATACTATCCT 28013 .......... .......... .......... .......... .......... .......... 165 GGTGTCGGAA CTTGACACTC CGATCCTCAC ATACTATCCT GGTACCGGAA CGTGGCACCC 27953 .......... .......... .......... .......... .......... .......... 165 GATCCATATA CTATTCTGGT GTCGGAACGT GACACTCCGA TCCTCATATA CTATCCTGGT 27893 .......... .......... .......... .......... .......... .......... 165 ACCGGAACGT GGCACCCGAT CCCCTAATCT CACTACTTTC GTTCATCAAG CCTTCTTTTA 27833 .......... .......... .......... .......... .......... .......... 165 TACCAAGGCA TCATCATTAA CAAAGTAGAT TAGGGCTTTT CAAGATTTAA GATTCAAGAG 27773 .......... .......... .......... .......... .......... .......... 165 CTTCATCATG CTTATTCATC ACAATTATAT AATCACATCA TGTAAGGATA CAATTAATCA 27713 .......... .......... .......... .......... .......... .......... 165 CATAGAAGGG TTTACAACAC TACCCAATAC ATATCATTCG CTATTAAGAG TTTACTACGA 27653 .......... .......... .......... .......... .......... .......... 165 ATAGTATAAA AACCATAACC TACCTCCACC GAAGATTAGT GATCAAGCAA GCAAATTCCC 27593 .......... .......... .......... .......... .......... .......... 165 CAAAGCTTTG TATTTTCCTC TTCTCGTTCG ATCCTCTCTC TCTCTTTGTT CTTTCTATTT 27533 .......... .......... .......... .......... .......... .......... 165 TCTTTATTCA AACCCTCTTT CTTTTACCCT AATTAGCATA TAATTAAGAA TAAAAGATGG 27473 .......... .......... .......... .......... .......... .......... 165 CAATAATAAC CCACTAATTT ACTCAAGGTT ACCTCTTTTA ACCCCCAAGT AATTAGACTT 27413 .......... .......... .......... .......... .......... .......... 165 ATTAACATTA ACCCACTAAC TTTATAATTA AAACAGGAAT AGTCAAAAAC TTCCTTTAAA 27353 .......... .......... .......... .......... .......... .......... 165 ACATTAAAGA AATCCGACTC AGCCTGGGAT TACGCAGCCT GTGACGGCCT GTCATGCCTG 27293 .......... .......... .......... .......... .......... .......... 165 CGACGGTCCG TCCTGCTGCT CCGTCACAGA GTTCAGAGAC TCAATTCCCT TAAAGAGTCT 27233 .......... .......... .......... .......... .......... .......... 165 GTGACGGTCC GTCACGCCTG TGACGGTCCG TCCTGCCATT CCGTTACGAA GTTTAGAGAG 27173 .......... .......... .......... .......... .......... .......... 165 TCGATTTCAG TACCCATTTT TCAGAATTTC AAAGTGTTTT GAAACGAGAC CCCCTCGACG 27113 .......... .......... .......... .......... .......... .......... 165 GTCCGTCGTG CCCATGACGG TCCGTCGTGG AATCCGTCGT CTCAGCCAGT TTTCCAGAAA 27053 .......... .......... .......... .......... .......... .......... 165 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACAA TAAATATTAG GTATAATAGA 26993 .......... .......... .......... .......... .......... .......... 165 TAAATTTATC ATTTTACCTG ATCTTATTTC ACATGTATGT CATCTATTTT TAGGTGTGTA 26933 .......... .......... .......... .......... .......... .......... 165 TAAATAGATA TTTAAATTAA ATTTGTATAA AGTTGAAGTA GACACTGAAT TCTACGAGAC 26873 .......... .......... .......... .......... .......... .......... 165 ATAATACAAG TAAGAGATCT AGGACGCAAA TTGTCATGTA AGATGACACG CAAAAATGTG 26813 .......... .......... .......... .......... .......... .......... 165 TGTATTTATT TATTCAACGA ATTTATAGAA ATATAAGTAT CTACTCGTGC ACACTCAAAA 26753 .......... .......... .......... .......... .......... .......... 165 ATAAAGAATA TAAATATAAG TGATAAGAGC ATATTTATAT ATTATGTCTA ACTATTAATT 26693 .......... .......... .......... .......... .......... .......... 165 TGATGTCCGT TGATCACATA AAAATTGAAC CAAATGAATC ATTTCCTACT TATTCTTAAT 26633 .......... .......... .......... .......... .......... .......... 165 ATACTTAAAT TAGTTATCTT CCATTATAAC ATATACAATT CATTCATTAT TCGTAACTAT 26573 .......... .......... .......... .......... .......... .......... 165 CCTTTGTAAA TATAGGTGCA TCGTATGTTT AATATATGGA TGAAATATTA ATGAAGATGT 26513 .......... .......... .......... .......... .......... .......... 165 ATAAATTTTA TACGAGAGTT ATACCATTAA AATTAAAATT TATAATGCTT GGTATAAAAT 26453 .......... .......... .......... .......... .......... .......... 165 TATACCAAGA AAAATGTTTT GCATGAATAT CATCTTAAAC AAAACAACAC ACAAATATGC 26393 .......... .......... .......... .......... .......... .......... 165 AATTCGAATG TGCATAGAAC CAAATATCCC ATAAATTTAA GGTCAATGAG CTAGAGTTCA 26333 .......... .......... .......... .......... .......... .......... 165 CCCAGGCAAG CAGCCTTATT TCCCCCCCCA AATTTAGGCC TTATTTTTTT TCTTTAAGAT 26273 .......... .......... .......... .......... .......... .......... 165 TAACATGTCT GAATTTGAAT AAACATTTGA ATAATTTTGT GTCTAAGTTT AAACATTAAA 26213 .......... .......... .......... .......... .......... .......... 165 TGATTAATAT TATTTATTTT TTATCATCTG AATATGAGTA ATTATTTATA ATTAAACATT 26153 .......... .......... .......... .......... .......... .......... 165 ATAAATATAT AATTTAAAAT AAGAAAGTAA TTAACCATCG TTTTTTTTTT TCTCAAAGCA 26093 .......... .......... .......... .......... .......... .......... 165 TATTTAAAAA GAGGAGGTTG TTCGATTTTG TAACTACACA ATTAAGAATA AAACGGTACT 26033 .......... .......... .......... .......... .......... .......... 165 TGCCGATGAT AAAATATCTA CTTTGAATGC TCTTCTTTCA AAAATTAGTG TGTATAATGA 25973 .......... .......... .......... .......... .......... .......... 165 ATTTTTTTTA AAAAAAAGAT ATATTTACAT TAGATATGAT GCAGTTAAAC AGTTATTGAA 25913 .......... .......... .......... .......... .......... .......... 165 ACATGAGGTT ATTTTCTTAG AATGTGTAAG GTCCTAAAAG TTATTTGTAA TCTTTTAACT 25853 .......... .......... .......... .......... .......... .......... 165 AAGGAATTTG ACTTGAAAAT GAATAAATGG TCTTTACCTC GAAGGAGATG AAACGGGATG 25793 .......... .......... .......... .......... .......... .......... 165 GTGCTAAAGC CCATTGATTG AGATAATATG ACACAAGGCC ATATTTTTTG ATGCAGATAG 25733 .......... .......... .......... .......... .......... .......... 165 TAGGGGCGAT TCAACTCTAA AGCCACTAAA GTAATGACTT TAGGCTTCCA AAATATAACG 25673 .......... .......... .......... .......... .......... .......... 165 CCTCAAATTT ATTTAATGTT ACAGATATAC AAATATAAAT ATACTTATAA TTATGTATCT 25613 .......... .......... .......... .......... .......... .......... 165 ATAATTAGTA TTAATTGAAA TTTTCTTAAT AGTTTCTAAT CATGGGCGAA TCCACATGTA 25553 .......... .......... .......... .......... .......... .......... 165 AAGGTGGGGT GTACGTCCAC TCGTTAACTT CGAAAAATCA TGTATAAATA TATATATATT 25493 .......... .......... .......... .......... .......... .......... 165 GAGAAACTGA TAAGGAAAAA AAATATAATA AAAAATGCAA CCTTAATGAA CATTGAACTG 25433 .......... .......... .......... .......... .......... .......... 165 GTCTTGATTT GCTGATAGAA ATAAGAAAAT ACCTCCTTGC AGACCTAGAT TTCAATCCTG 25373 .......... .......... .......... .......... .......... .......... 165 ATCAATAAGT CACTATCCTA TTCAAATCTT GGCTTCGCCT ATATTTTGTG TTAAATTTGA 25313 .......... .......... .......... .......... .......... .......... 165 ACACTAAGAG CCTGTTTGGC TCAGCTTAAA AGCTGGTCAA ACTGACTTAA AAGCTGGTTT 25253 .......... .......... .......... .......... .......... .......... 165 TTGACTTATT TAGTTGTTTG GCAATACTCA AAATAACTTA CTTTAAGTTA AAAAAAACTT 25193 .......... .......... .......... .......... .......... .......... 165 ATTTTAAGCC AAAAGTTAAA AACTGGGGTA GGGGTGTTTT TTTTTTTTAG CTTATAAGCT 25133 .......... .......... .......... .......... .......... .......... 165 GTTTTAAGTT GACCACATTT TTATCTTTTT GCCATTAATA TTTTTATGCA ATCTCCAAAT 25073 .......... .......... .......... .......... .......... .......... 165 TACTCATATA ACTCTAACAT CTCTTTCTTC CATTTTTCCC TTTTCACGTT TGATATAACA 25013 .......... .......... .......... .......... .......... .......... 165 ACTTCAGCAC TTTTATCCAA A 24992 ||||||| || | .......... TTTTATCGAA A 176 hqPGS_C04HBa0077O05.1-_SGN-E238551- (28732 28566) ******************************************************************************** EST sequence 63 -strand 402 n (File: SGN-E352844-) 1 TTTTTTTTAT AAAAACCAAT TCAATAACTA TTATTTCCCA AAATCTGGAA GTTATCATCA 61 CAAGAACATC TACTTCGAAT TACTAAATCT AAGAGTATCT AAGAAGCTAA AATACATAAA 121 CAGCTAGTCC ATGCCGGAAC TTCAAGGCAT CAAGACATGA AGAAGAAGAT CCAGTCCAAG 181 CTAGAAGCTT TGTTTTATCG AAAAAAGGTG ATTTTTCGAA AAGAGTTTGT TTTATTTTAA 241 AGTATTTTTC GACTTTAGGA GTCGCCACTT AATTTTTAAG AAAAATCAAG AAAACTCATT 301 CTCAAAACAA TTTAAACAGA AAAGTCGTTT TGAAAATATT TTTTAGGATT CGGGATTCTT 361 ATTAGCGTCT TAGGAAGGTG TTTAAGGCAC CTAAGACACT CC Predicted gene structure (within gDNA segment 29871 to 25857): Exon 1 28758 28567 ( 192 n); cDNA 2 191 ( 190 n); score: 0.896 MATCH C04HBa0077O05.1- SGN-E352844- 0.896 192 0.478 C PGS_C04HBa0077O05.1-_SGN-E352844- (28758 28567) Alignment (genomic DNA sequence = upper lines): TTCAATAACT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGA AGTCATTATC 28699 || | | | || | ||| |||||| |||| | ||| |||||||||| ||| || ||| TTTTTTTATA AAAACCAATT CAATAACTAT TATT-T-CCC AAAATCTGGA AGTTATCATC 59 ACAAGAACAT CTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGTTA AAATACATAA 28639 |||||||||| ||||||| || |||||||||| |||||||||| ||||||| || |||||||||| ACAAGAACAT CTACTTCGAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 119 ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATA AAGAAGAAGA TCCAGTCCAA 28579 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 179 GCTAGAAGCT TT 28567 |||||||||| || GCTAGAAGCT TT 191 hqPGS_C04HBa0077O05.1-_SGN-E352844- (28758 28567) ******************************************************************************** EST sequence 104 -strand 286 n (File: SGN-E355114-) 1 CCACAGCCCC AGTGGCTGGC TCAGTTGTTT CTTGTCTGGC CGGTGTTGGT GTTGACGTGG 61 TCGTTGCTCT AGTTCTAACC ATCTGCAAAA GAGAGTGAAG ATGGTCAGAT ACCAATTTGT 121 ATCGCCTAGA TACCAATTGG ACTCAAGTAG TAGCACGAAA GAAAGAATGA AAGGGTGAAA 181 TTTTCCTAAA GTCTTATAGC CTCTCAAAGA AAAGTAAAGG CGTCCCCCTA CCGTTCCTAA 241 AGACTCTACT AGACCTGTTC TTGTGTGATG AGACCAACGA ACCTAA Predicted gene structure (within gDNA segment 30334 to 28317): Exon 1 29200 28917 ( 284 n); cDNA 3 286 ( 284 n); score: 0.908 MATCH C04HBa0077O05.1- SGN-E355114- 0.908 284 0.993 C PGS_C04HBa0077O05.1-_SGN-E355114- (29200 28917) Alignment (genomic DNA sequence = upper lines): ACAGTCTCAG TGGCTGGCTC AGATGCATCT TGTCTTGCTG ATGTTGATGT TGGCGCGGTC 29141 |||| | ||| |||||||||| || || ||| ||||| || | ||||| ||| || || |||| ACAGCCCCAG TGGCTGGCTC AGTTGTTTCT TGTCTGGCCG GTGTTGGTGT TGACGTGGTC 62 GTTGCTCTAG TTCTAACCAT CTGCGAAATA GAGTGAAGAT GGTCAGATAC CAATTTGTAT 29081 |||||||||| |||||||||| |||| ||| | |||||||||| |||||||||| |||||||||| GTTGCTCTAG TTCTAACCAT CTGCAAAAGA GAGTGAAGAT GGTCAGATAC CAATTTGTAT 122 CACCTAGATA CCAATTGGAT CCAAGTAATA ACACAAAAGA AAGAAAGAAA GAATGGAATT 29021 | |||||||| ||||||||| |||||| || ||| ||||| ||||| |||| | || |||| CGCCTAGATA CCAATTGGAC TCAAGTAGTA GCACGAAAGA AAGAATGAAA GGGTGAAATT 182 TTCCTAAAGT CTTATAGCCT CTCAAAGAAA AGTAAAGGCG TCCCCCTACC GTTCCTTAAG 28961 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| TTCCTAAAGT CTTATAGCCT CTCAAAGAAA AGTAAAGGCG TCCCCCTACC GTTCCTAAAG 242 ACTCTACTAG ACTCGTTCTT GTGTGATGAG ACCAACGAAC CTAA 28917 |||||||||| || |||||| |||||||||| |||||||||| |||| ACTCTACTAG ACCTGTTCTT GTGTGATGAG ACCAACGAAC CTAA 286 hqPGS_C04HBa0077O05.1-_SGN-E355114- (29200 28917) ******************************************************************************** EST sequence 259 +strand 694 n (File: SGN-E353359+) 1 TGTAGTCTAT GCACATTCAA AAACTGCCGA TCTTTACAAC AAAACCGGAG CACCCCAAGG 61 AGATGCACTT GGTCTAATGA AGCCTTTGTT CAATAACTCT TGAAGTTGTG CCTTTAACTC 121 TCTTAACTCT GCGGGAGCCA TTCTATAAGG GGGTATAAAA ATGGGGCGTG TGCCCGGTTC 181 GAGATCAATA CAGAAGTCAA TATCCCTATC CGGTGGCATA CCAGGATGAT CTGCAGGGAA 241 CACATCCATA AACTCACGAA CTACTGAAAC TGAGTCAATC GAAGGTACTT GGGTAGTGTT 301 ATCCTTGAGA TGTGCCAAGA AAGCTAAACA CCCTTTACTA ACCATTTTCT TAGCACGAAG 361 AAAGGAGATG ATACGCACCG GATTGGAAGT GTAGTCACCC TCCTACACTA ACAGATCTGT 421 CCCAGGCTTG GCTAACGTCA CGGTTTTAGC ATTACAATCC AAGATTGCAA AATTTGGAGA 481 AAGCCAAGTC ATACCCAGAA TTACATCGAA GTCAACCATT TCTTGCAAGG ATTTTGCCGT 541 AGCCGCTACC TGTAACGCTG AAATCCGCAA CTCTGACCTC AACCCTTTCA CAAAACGACG 601 AATCCTCTCT TGTGGACTGA AACAAAGTTG AGTGGCATAT CTGGATAGTG CACGAAACTT 661 AGCCTCATAT GCATTGACCT ACATCCTACC TTGC Predicted gene structure (within gDNA segment 32269 to 29104): Exon 1 31299 30818 ( 482 n); cDNA 38 519 ( 482 n); score: 0.923 Intron 1 30817 30079 ( 739 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0.88) Exon 2 30078 29903 ( 176 n); cDNA 520 694 ( 175 n); score: 0.892 MATCH C04HBa0077O05.1- SGN-E353359+ 0.915 658 0.948 C PGS_C04HBa0077O05.1-_SGN-E353359+ (31299 30818,30078 29903) Alignment (genomic DNA sequence = upper lines): AACAAAACCG GAGCACCCCA AGGGGATGCA CTTGGTCTAA TGAAGCCTTT GCTCAACAAC 31240 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| | |||| ||| AACAAAACCG GAGCACCCCA AGGAGATGCA CTTGGTCTAA TGAAGCCTTT GTTCAATAAC 97 TCTTGCAGTT GGGCCTTTAA CTCTCTTAAC TCCGCGGGAG CTATTGTATA AGGGGGTATA 31180 ||||| |||| | |||||||| |||||||||| || ||||||| | ||| |||| |||||||||| TCTTGAAGTT GTGCCTTTAA CTCTCTTAAC TCTGCGGGAG CCATTCTATA AGGGGGTATA 157 GAAATGGGGC CAATACCCGG TTCAAGATCA ATGTAGAAGT CAATATCCCT ATCTGGTGGC 31120 ||||||||| | ||||| ||| |||||| || |||||| |||||||||| ||| |||||| AAAATGGGGC GTGTGCCCGG TTCGAGATCA ATACAGAAGT CAATATCCCT ATCCGGTGGC 217 ATACCAGGAA GATCTGCAGG GAACACATCC AGAAACTCAT GGACTACCGA AACTGACTCA 31060 ||||||||| |||||||||| |||||||||| | ||||||| | ||||| || |||||| ||| ATACCAGGAT GATCTGCAGG GAACACATCC ATAAACTCAC GAACTACTGA AACTGAGTCA 277 ATTGACGGTA CTTGGGTAGT GTCATCCCTG AGGTGTGCCA AGAAAGCTAA ACAACCCTTA 31000 || || |||| |||||||||| || |||| || || ||||||| |||||||||| ||| || ||| ATCGAAGGTA CTTGGGTAGT GTTATCCTTG AGATGTGCCA AGAAAGCTAA ACACCCTTTA 337 CTAACCATTC TCTTAGCACG AAGAAAGGAG ATGATACGAA CCGGGTTGGA AGTGTAGTTA 30940 ||||||||| |||||||||| |||||||||| |||||||| | |||| ||||| |||||||| | CTAACCATTT TCTTAGCACG AAGAAAGGAG ATGATACGCA CCGGATTGGA AGTGTAGTCA 397 CCCTCCCACA CTAACGGATC TGTCCCAGGC TTGGCTAACG TCACAGTTTT AGCATTACAA 30880 |||||| ||| ||||| |||| |||||||||| |||||||||| |||| ||||| |||||||||| CCCTCCTACA CTAACAGATC TGTCCCAGGC TTGGCTAACG TCACGGTTTT AGCATTACAA 457 TCCAAGATTG CAAAATTTGG AGAAAGCCAA GTCATACCCA GAATTACATC GAAGTCAACC 30820 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAAGATTG CAAAATTTGG AGAAAGCCAA GTCATACCCA GAATTACATC GAAGTCAACC 517 ATTTCTAAGA TAACCAAGTC TACATGAGTA TTGCTCCCCA CAAAAGTCAC CAGACCAGAC 30760 || AT........ .......... .......... .......... .......... .......... 519 CTATATACTT TTTCAACTAT CACAGACTCA CCCACCGGAG TAGAAACACG AATAGGCATG 30700 .......... .......... .......... .......... .......... .......... 519 TCAAGCAATT CACAATGTAA ATTAAGACCA TTAGCAAATG AGGAAGATAC ATAAGAAAAT 30640 .......... .......... .......... .......... .......... .......... 519 GTGGATCCAG GATCAAACAA TACAGAAGCC ATGCAATCAC AAACCAAAAG ATTACCTGTG 30580 .......... .......... .......... .......... .......... .......... 519 ATAACAACAT CAGATGTCTC CGCTTCAGAC CGCCCAGGGA AGGCGTAACA ATGGGCCCTA 30520 .......... .......... .......... .......... .......... .......... 519 TCACCTGTTT GCCCGTTACC CCAACCATGC TGCACCGCAG CCAGTTTGCC CGCCACCCCG 30460 .......... .......... .......... .......... .......... .......... 519 GTTGGTTTGG TGACCATCAT TACCTCGGCC ACCACGTTCT CCAGGATAAC GACCTCTTCT 30400 .......... .......... .......... .......... .......... .......... 519 ATGACCACCT CTACCTCTAA CTATTGGAGG TCTGTAACTC TGTTTTGGAC AATACCTCTT 30340 .......... .......... .......... .......... .......... .......... 519 AATGTGTCCA GTCTCCCCAC ATCCATAACA CTCTCTGGAT TTAAGCATAG GTCTCTCAGA 30280 .......... .......... .......... .......... .......... .......... 519 GAAGTGTTGA CCGGTCTAAG GTGGACCCCC AACTACAGTC TGTAGTGAAG ACTGAATTGG 30220 .......... .......... .......... .......... .......... .......... 519 TCGGACTGAG TAACCTCCTG AACCCTGTCC TCTAGAGTAA GAACCATTAA ACTCACCTCC 30160 .......... .......... .......... .......... .......... .......... 519 CCTTCGAAAA CTTTTTGATG TCGATGCCAT GGTGAAGTCA TCTGGCTTCA CTCCTTCCAC 30100 .......... .......... .......... .......... .......... .......... 519 CTCTATCACG AAGTCCACCA CTTCTTGAAA GGATTTTGCC GTAGTCGCTA CCTATAAGGC 30040 |||||| || |||||||||| |||| ||||| ||| ||| || .......... .......... .TTCTTGCAA GGATTTTGCC GTAGCCGCTA CCTGTAACGC 558 TAAAAATCCG CAATTCTGAC CTCAACCCCT TCACAAAACG GCAAATCCGC TCTTATGGAC 29980 | ||||||| ||| |||||| |||||||| | |||||||||| | ||||| | |||| ||||| T-GAAATCCG CAACTCTGAC CTCAACCCTT TCACAAAACG ACGAATCCTC TCTTGTGGAC 617 TGAAACAAAG CTGAGTGGCA TATCTGGAAA GTTCACGAAA CTTAGCCTCA TATGCAGTAA 29920 |||||||||| ||||||||| |||||||| | || ||||||| |||||||||| |||||| | | TGAAACAAAG TTGAGTGGCA TATCTGGATA GTGCACGAAA CTTAGCCTCA TATGCATTGA 677 CCGACATCTT ACCTTGC 29903 || ||||| | ||||||| CCTACATCCT ACCTTGC 694 hqPGS_C04HBa0077O05.1-_SGN-E353359+ (31299 30818,30078 29903) ******************************************************************************** EST sequence 239 +strand 433 n (File: SGN-E352180+) 1 CCCTTGAAGA CCGGAGGTTT CAATTTCAAG AACTTACTGA AAAGTTCATG CTGATCATTT 61 GTCATTATAG GCCCAGTAGT CAAACGTGGA AATGTACCTA TGTGCAATGG AACATCCATG 121 CGGGGAGCCA TAGTAGCCGC ATGTTGTACT TCTGAAACCG GAGGTGTTGG CGCAGAAAAC 181 ACTGGAGGTG CTTGACCTTG ATCAGATAAA CCGCTAAGAT AAGCCAGAAC CTGATTGATC 241 ATCTCTGGGG TAGGTTGGGG TGGCATTTCC TCATTTTGCA CTTGTTCAGT TTCCCCATCC 301 TCCCCTTCTC TTATTACTTC CTCAGTCGGT GGAGGAGTCA CCGCCCTAGT ACCAGATGGG 361 CTCGGTTCTC GTTCTCTTCC TCTAGATGAC GTCCTCCCAC GACCTCTACC ACGGCCCCTT 421 GCCGCTGTTC TCC Predicted gene structure (within gDNA segment 30349 to 27960): Exon 1 29641 29212 ( 430 n); cDNA 1 430 ( 430 n); score: 0.884 MATCH C04HBa0077O05.1- SGN-E352180+ 0.884 430 0.993 C PGS_C04HBa0077O05.1-_SGN-E352180+ (29641 29212) Alignment (genomic DNA sequence = upper lines): CCCTTGAAGA CTGGAGGTTT CAATTTCAAG AACTTACTGA AAAGTTCATG CTGATCATTT 29582 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTTGAAGA CCGGAGGTTT CAATTTCAAG AACTTACTGA AAAGTTCATG CTGATCATTT 60 GTCATTATAG GCCCTGTAGT CAGACGAGGA AATGTGCCTA TTTACAATGA GGCATCCATG 29522 |||||||||| |||| ||||| || ||| ||| ||||| |||| | | ||||| |||||||| GTCATTATAG GCCCAGTAGT CAAACGTGGA AATGTACCTA TGTGCAATGG AACATCCATG 120 CAGGGAGCCA CAGTAGTCGC ATGTTGTACC TCCGGAGCCT GAGGTGCTGG TGCAGAAAAC 29462 | |||||||| ||||| ||| ||||||||| || | | || |||||| ||| ||||||||| CGGGGAGCCA TAGTAGCCGC ATGTTGTACT TCTGAAACCG GAGGTGTTGG CGCAGAAAAC 180 ACTGGAGGTG TCTGGCCTTG ATCAGATAGC CCGCTAAGAT AAGCAAGAAC CTGATTGATC 29402 |||||||||| || ||||| |||||||| |||||||||| |||| ||||| |||||||||| ACTGGAGGTG CTTGACCTTG ATCAGATAAA CCGCTAAGAT AAGCCAGAAC CTGATTGATC 240 ATCTCTGGGG TAGGTTGGGG TGGCAATTCC TCATTCTGTA CTTGCTCATT TTCCCTTTCC 29342 |||||||||| |||||||||| ||||| |||| ||||| || | |||| ||| | ||||| ||| ATCTCTGGGG TAGGTTGGGG TGGCATTTCC TCATTTTGCA CTTGTTCAGT TTCCCCATCC 300 TCACCCTCTC TTACCACTTC CTCAGTTGGT GGAGGAGTCA CCGCCCTAGT ACCAGATGGG 29282 || || |||| ||| ||||| |||||| ||| |||||||||| |||||||||| |||||||||| TCCCCTTCTC TTATTACTTC CTCAGTCGGT GGAGGAGTCA CCGCCCTAGT ACCAGATGGG 360 CTAGGTGCTC GTCCTCTTCT CCTAGAGGAC GTCCTCCCAC GATCTCTTCC GCGGCCTCTT 29222 || ||| ||| || |||||| ||||| ||| |||||||||| || |||| || ||||| ||| CTCGGTTCTC GTTCTCTTCC TCTAGATGAC GTCCTCCCAC GACCTCTACC ACGGCCCCTT 420 GCCACTGCTC 29212 ||| ||| || GCCGCTGTTC 430 hqPGS_C04HBa0077O05.1-_SGN-E352180+ (29641 29212) ******************************************************************************** EST sequence 135 -strand 554 n (File: SGN-E329287-) 1 AGAATGATGC CCAAGTCATA CGTGGTGCCT CTGTTGGTTG ACACTCAACA TGTGACCGCC 61 ACCACATTTT GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCAACACCA AACCGTTCTA 121 CTATACCCAT CTTGTGTAGT AGCTCATGAC AGTCAACCAG AAAATCGTAG GCATCCTCAG 181 ATTCAACACC CTTGTAGACT TGAGGTTTCA ATTTCAAGAA CTTACTAAAA AGTTCATGCT 241 GATCATTTGT CATTATAGGC CCTGTAGTCA GACGGGGAAA CGTTCCTATT TCCAATGAGG 301 TATCGATGCG GGGAGTCACA GTAGGCGCAT GTTGTACCTC CGGAGCCTGA GGTGCTAGTG 361 CAGAAAACAC TGGAGGTGCT TGGCCTTGAT CAGATAACCC GCTAAGGTAA GCAAGAACCT 421 GATTGATCAT CTCTTGGGTA GGTTGGGGTG GCAATTCCTC ATTCTGCACT TGTTCATTCT 481 CCCCATCCTC ACCCTCTCTT ACCACTTCCT CAGTTGGTGG AGGTGTCACC GCCTTAGTAC 541 CAGATGGGCT AGGT Predicted gene structure (within gDNA segment 30439 to 28676): Exon 1 29829 29276 ( 554 n); cDNA 1 554 ( 554 n); score: 0.942 MATCH C04HBa0077O05.1- SGN-E329287- 0.942 554 1.000 C PGS_C04HBa0077O05.1-_SGN-E329287- (29829 29276) Alignment (genomic DNA sequence = upper lines): AGAATGATGC CCAAGTCATA GGTGGTGCCT CTGTTGGTTG ACACTCCACA TGCGACCGCC 29770 |||||||||| |||||||||| ||||||||| |||||||||| |||||| ||| || ||||||| AGAATGATGC CCAAGTCATA CGTGGTGCCT CTGTTGGTTG ACACTCAACA TGTGACCGCC 60 ACCACATTTT GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCAACACCA AACCGTTCTA 29710 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCACATTTT GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCAACACCA AACCGTTCTA 120 CTATACCCAT CTTGTGTAGT AGCTCATGAA ACTCAACCAG AAAATCGTAT GCATCCTCAG 29650 |||||||||| |||||||||| ||||||||| | |||||||| ||||||||| |||||||||| CTATACCCAT CTTGTGTAGT AGCTCATGAC AGTCAACCAG AAAATCGTAG GCATCCTCAG 180 ATTCAGCACC CTTGAAGACT GGAGGTTTCA ATTTCAAGAA CTTACTGAAA AGTTCATGCT 29590 ||||| |||| |||| ||||| ||||||||| |||||||||| |||||| ||| |||||||||| ATTCAACACC CTTGTAGACT TGAGGTTTCA ATTTCAAGAA CTTACTAAAA AGTTCATGCT 240 GATCATTTGT CATTATAGGC CCTGTAGTCA GACGAGGAAA TGTGCCTATT TACAATGAGG 29530 |||||||||| |||||||||| |||||||||| |||| ||||| || |||||| | |||||||| GATCATTTGT CATTATAGGC CCTGTAGTCA GACGGGGAAA CGTTCCTATT TCCAATGAGG 300 CATCCATGCA GGGAGCCACA GTAGTCGCAT GTTGTACCTC CGGAGCCTGA GGTGCTGGTG 29470 ||| |||| ||||| |||| |||| ||||| |||||||||| |||||||||| |||||| ||| TATCGATGCG GGGAGTCACA GTAGGCGCAT GTTGTACCTC CGGAGCCTGA GGTGCTAGTG 360 CAGAAAACAC TGGAGGTGTC TGGCCTTGAT CAGATAGCCC GCTAAGATAA GCAAGAACCT 29410 |||||||||| |||||||| |||||||||| |||||| ||| |||||| ||| |||||||||| CAGAAAACAC TGGAGGTGCT TGGCCTTGAT CAGATAACCC GCTAAGGTAA GCAAGAACCT 420 GATTGATCAT CTCTGGGGTA GGTTGGGGTG GCAATTCCTC ATTCTGTACT TGCTCATTTT 29350 |||||||||| |||| ||||| |||||||||| |||||||||| |||||| ||| || ||||| | GATTGATCAT CTCTTGGGTA GGTTGGGGTG GCAATTCCTC ATTCTGCACT TGTTCATTCT 480 CCCTTTCCTC ACCCTCTCTT ACCACTTCCT CAGTTGGTGG AGGAGTCACC GCCCTAGTAC 29290 ||| ||||| |||||||||| |||||||||| |||||||||| ||| |||||| ||| |||||| CCCCATCCTC ACCCTCTCTT ACCACTTCCT CAGTTGGTGG AGGTGTCACC GCCTTAGTAC 540 CAGATGGGCT AGGT 29276 |||||||||| |||| CAGATGGGCT AGGT 554 hqPGS_C04HBa0077O05.1-_SGN-E329287- (29829 29276) ******************************************************************************** EST sequence 162 +strand 716 n (File: SGN-E577713+) 1 CGGTGGATAC CTAGGCACCC AGAGACGAGG AAGGGCGTAG TAATCGACGA AATGCTTCGG 61 GGAGTTGAAA ATAAGCATAG ATCCGGAGAT TCCCGAATAG GGCAACCTTT CGAACTGCTG 121 CTGAATCCAT GGGCAGGCAA GAGACAACCT GGCGAACTGA AACATCTTAG TAGCCAGAGG 181 AAAAGAAAGC AAATAAGGAA GATACATAAG AAAACGTGGA TCCAGGATCA AACAATACAG 241 AAGCCATGCA ATCACAAACC AGAAGATTAC CTGTGATGAC AACATCAGAT GCCTCCGCTT 301 CACACCGCCC AGGGAAAGCG TAACAATGGG CCCTATCGTT CGTCTGTCCG TTGCCCCTAC 361 CATGTTGTGA TGTAGTGGCC CAAGTTTGCC CATTACCTCT GCCGTTTTGG TGACCACCAT 421 TACCTCGACC ACCACGTCCT CCAGAATAAC GGCCTCTACC ATGACCACCT CTACCTCTAG 481 CTATTGGGGG TCTATAACTT TGTCTGGGAC AATTTTTCCT AATATGTCCA ATCTCCCCAC 541 ATCCATACCA TTCTCTGGAG TCAATCCTAG GCCCCTCGGA GAAGTGTTGA CCGGTCTGAG 601 GTGGTCCCCC AACTACAGTC TGTAGTGAAG ACTCAATTGG TCGGACTGAG TAACTTCCCG 661 AACCCTGTCC TCTAGTGTAA GAACCATTAA ACTCACCTCC CTTTCGAAGC CTTTTT Predicted gene structure (within gDNA segment 33209 to 29399): Exon 1 30734 30705 ( 30 n); cDNA 156 185 ( 30 n); score: 0.633 Intron 1 30704 30670 ( 35 n); Pd: 0.799 (s: 0), Pa: 0.000 (s: 0.92) Exon 2 30669 30144 ( 526 n); cDNA 186 716 ( 531 n); score: 0.847 MATCH C04HBa0077O05.1- SGN-E577713+ 0.847 556 0.777 C PGS_C04HBa0077O05.1-_SGN-E577713+ (30734 30705,30669 30144) Alignment (genomic DNA sequence = upper lines): ACTCACCCAC CGGAGTAGAA ACACGAATAG GCATGTCAAG CAATTCACAA TGTAAATTAA 30675 ||| | || | ||||| | | ||| || ACTGAAACAT CTTAGTAGCC AGAGGAAAAG .......... .......... .......... 185 GACCATTAGC AAATGAGGAA GATACATAAG AAAATGTGGA TCCAGGATCA AACAATACAG 30615 ||| |||| ||||| |||||||||| |||| ||||| |||||||||| |||||||||| .....AAAGC AAATAAGGAA GATACATAAG AAAACGTGGA TCCAGGATCA AACAATACAG 240 AAGCCATGCA ATCACAAACC AAAAGATTAC CTGTGATAAC AACATCAGAT GTCTCCGCTT 30555 |||||||||| |||||||||| | |||||||| ||||||| || |||||||||| | |||||||| AAGCCATGCA ATCACAAACC AGAAGATTAC CTGTGATGAC AACATCAGAT GCCTCCGCTT 300 CAGACCGCCC AGGGAAGGCG TAACAATGGG CCCTATCACC TGTTTGCCCG TTACCCCAAC 30495 || ||||||| |||||| ||| |||||||||| ||||||| || || ||| || |||| || CACACCGCCC AGGGAAAGCG TAACAATGGG CCCTATCGTT CGTCTGTCCG TTGCCCCTAC 360 CATGCTG-CA --CCGCAG-C C-AGTTTGCC CGCCACCCCG GTTGGTTTGG TGACCATCAT 30440 |||| || | | | | | |||||||| | ||| | | | ||||| |||||| ||| CATGTTGTGA TGTAGTGGCC CAAGTTTGCC CATTACCTCT GCCGTTTTGG TGACCACCAT 420 TACCTCGGCC ACCACGTTCT CCAGGATAAC GACCTCTTCT ATGACCACCT CTACCTCTAA 30380 ||||||| || ||||||| || |||| ||||| | ||||| | |||||||||| ||||||||| TACCTCGACC ACCACGTCCT CCAGAATAAC GGCCTCTACC ATGACCACCT CTACCTCTAG 480 CTATTGGAGG TCTGTAACTC TGTTTTGGAC AATACCTCTT AATGTGTCCA GTCTCCCCAC 30320 ||||||| || ||| ||||| ||| | |||| ||| || | ||| |||||| ||||||||| CTATTGGGGG TCTATAACTT TGTCTGGGAC AATTTTTCCT AATATGTCCA ATCTCCCCAC 540 ATCCATAACA CTCTCTGGAT TTAAGCATAG GTCTCTCAGA GAAGTGTTGA CCGGTCTAAG 30260 ||||||| || |||||||| | || | ||| | | ||| || |||||||||| ||||||| || ATCCATACCA TTCTCTGGAG TCAATCCTAG GCCCCTCGGA GAAGTGTTGA CCGGTCTGAG 600 GTGGACCCCC AACTACAGTC TGTAGTGAAG ACTGAATTGG TCGGACTGAG TAACCTCCTG 30200 |||| ||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||| ||| | GTGGTCCCCC AACTACAGTC TGTAGTGAAG ACTCAATTGG TCGGACTGAG TAACTTCCCG 660 AACCCTGTCC TCTAGAGTAA GAACCATTAA ACTCACCTCC CCTTCGAAAA CTTTTT 30144 |||||||||| ||||| |||| |||||||||| |||||||||| | |||||| |||||| AACCCTGTCC TCTAGTGTAA GAACCATTAA ACTCACCTCC CTTTCGAAGC CTTTTT 716 hqPGS_C04HBa0077O05.1-_SGN-E577713+ (30734 30705,30669 30144) ******************************************************************************** EST sequence 283 +strand 720 n (File: SGN-E356614+) 1 GCGAATCCGC TCTTGAGGAC TGAAACAGAG TTGAGTGGCA TATCTGGATA GTGCACGAAA 61 CTTAGCCTCA TAAGCATTAA CTGACACCCT ACCTTGCTCT AGGCTCAAGA ACTCATCCCT 121 TTTCTTATCC CTCAAAGTCC GGGGGATATA CTTCTCCATA AACAAACTAT AGAATGAGGC 181 CCAAGTCATA GGTGATGCCT CTATTGGTTG ACACTCGATA TGTGACCGCC ACCACATTTG 241 GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCCACACCA AACCGTTCTA CTATACCCAT 301 CTTGTGTAGT AGCTCGTGAC AGTCAACCAG AAAATCATAA GCATCCTCCG ATTCAGCACC 361 CTTGAAGACC GGAGGTTTCA ATTTCAAGAA CTTACTGAAA AGTTCATGCT GATCATTTGT 421 CATTATAGGG ACAGTAGTCA AACGTGGAAA TGTGCCTATG TCCAATGGAA CATCCATGCG 481 GGGAGCCATA GTAGCCGCAT GTTGTACTTC TGAAACCGGA GGTGTTGGCG CAGAAAACAC 541 TGGAGGTGCT TGACCTTGAT CAGATAACCC GCTAAGATAA GCCAGAACCT GATTGATCAT 601 CTCTGGGGTA GGTTGGGGTG GCATTTCCTC ATTTTGCACT TGNTCAGTTT CCCCATCCCT 661 CCCTTTCTCT ATTACTTCCT CAGTCAGTGG AAGAGTCACT GCCCTAGTAT CAGATGGGCT Predicted gene structure (within gDNA segment 30878 to 27797): Exon 1 29999 29280 ( 720 n); cDNA 1 720 ( 720 n); score: 0.891 MATCH C04HBa0077O05.1- SGN-E356614+ 0.891 720 1.000 C PGS_C04HBa0077O05.1-_SGN-E356614+ (29999 29280) Alignment (genomic DNA sequence = upper lines): GCAAATCCGC TCTTATGGAC TGAAACAAAG CTGAGTGGCA TATCTGGAAA GTTCACGAAA 29940 || ||||||| |||| |||| ||||||| || ||||||||| |||||||| | || ||||||| GCGAATCCGC TCTTGAGGAC TGAAACAGAG TTGAGTGGCA TATCTGGATA GTGCACGAAA 60 CTTAGCCTCA TATGCAGTAA CCGACATCTT ACCTTGCTCT AGGCTCAAGA ATTCATCTCT 29880 |||||||||| || ||| ||| | |||| | | |||||||||| |||||||||| | ||||| || CTTAGCCTCA TAAGCATTAA CTGACACCCT ACCTTGCTCT AGGCTCAAGA ACTCATCCCT 120 TTTCCTATCC CTCAAAGTTC GGGGGATATA CTTCTCCATA GACAAGCTAG AGAATGATGC 29820 |||| ||||| |||||||| | |||||||||| |||||||||| |||| ||| ||||||| || TTTCTTATCC CTCAAAGTCC GGGGGATATA CTTCTCCATA AACAAACTAT AGAATGAGGC 180 CCAAGTCATA GGTGGTGCCT CTGTTGGTTG ACACTCCACA TGCGACCGCC ACCACATTTT 29760 |||||||||| |||| ||||| || ||||||| |||||| | | || ||||||| ||||||||| CCAAGTCATA GGTGATGCCT CTATTGGTTG ACACTCGATA TGTGACCGCC ACCACATTTG 240 GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCAACACCA AACCGTTCTA CTATACCCAT 29700 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCCACACCA AACCGTTCTA CTATACCCAT 300 CTTGTGTAGT AGCTCATGAA ACTCAACCAG AAAATCGTAT GCATCCTCAG ATTCAGCACC 29640 |||||||||| ||||| ||| | |||||||| |||||| || |||||||| | |||||||||| CTTGTGTAGT AGCTCGTGAC AGTCAACCAG AAAATCATAA GCATCCTCCG ATTCAGCACC 360 CTTGAAGACT GGAGGTTTCA ATTTCAAGAA CTTACTGAAA AGTTCATGCT GATCATTTGT 29580 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGAAGACC GGAGGTTTCA ATTTCAAGAA CTTACTGAAA AGTTCATGCT GATCATTTGT 420 CATTATAGGC CCTGTAGTCA GACGAGGAAA TGTGCCTATT TACAATGAGG CATCCATGCA 29520 ||||||||| | ||||||| ||| ||||| ||||||||| | ||||| ||||||||| CATTATAGGG ACAGTAGTCA AACGTGGAAA TGTGCCTATG TCCAATGGAA CATCCATGCG 480 GGGAGCCACA GTAGTCGCAT GTTGTACCTC CGGAGCCTGA GGTGCTGGTG CAGAAAACAC 29460 |||||||| | |||| ||||| ||||||| || | | || || |||| ||| | |||||||||| GGGAGCCATA GTAGCCGCAT GTTGTACTTC TGAAACCGGA GGTGTTGGCG CAGAAAACAC 540 TGGAGGTGTC TGGCCTTGAT CAGATAGCCC GCTAAGATAA GCAAGAACCT GATTGATCAT 29400 |||||||| || ||||||| |||||| ||| |||||||||| || ||||||| |||||||||| TGGAGGTGCT TGACCTTGAT CAGATAACCC GCTAAGATAA GCCAGAACCT GATTGATCAT 600 CTCTGGGGTA GGTTGGGGTG GCAATTCCTC ATTCTGTACT TGCTCATTTT CCCTTTCCTC 29340 |||||||||| |||||||||| ||| |||||| ||| || ||| || ||| ||| ||| ||| | CTCTGGGGTA GGTTGGGGTG GCATTTCCTC ATTTTGCACT TGNTCAGTTT CCCCATCC-C 659 ACCCTCTCT- TACCACTTCC TCAGTTGGTG GAGGAGTCAC CGCCCTAGTA CCAGATGGGC 29281 |||| ||| || |||||| ||||| ||| || ||||||| ||||||||| ||||||||| TCCCTTTCTC TATTACTTCC TCAGTCAGTG GAAGAGTCAC TGCCCTAGTA TCAGATGGGC 719 T 29280 | T 720 hqPGS_C04HBa0077O05.1-_SGN-E356614+ (29999 29280) ******************************************************************************** EST sequence 188 +strand 664 n (File: SGN-E352401+) 1 AATCCGCTCT TGAGGACTGA AACAGAGTTG AGTGGCATAT CTGGATAGTG CACGAAACTT 61 AGCCTCATAA GCATTAACTG ACACCCTACC TTGCTCTAGG CTCAAGAACT CATCCCTTTT 121 CTTATCCCTC AAAGTCCGGG GGATATACTT CTCCATAAAC AAACTATAGA ATGAGGCCCA 181 AGTCATAGGT GATGCCTCTA TTGGTTGACA CTCGATATGT GACCGCCACC ACATTTGGGC 241 GTTCCCTTGA AACTGATAAG TCACAAACTC CACACCAAAC CGTTCTACTA TACCCATCTT 301 GTGTAGTAGC TCGTGACAGT CAACCAGAAA ATCATAAGCA TCCTCCGATT CAGCACCCTT 361 GAAGACCGGA GGTTTCAATT TCAAGAACTT ACTGAAAAGT TCATGCTGAT CATTTGTCAT 421 TATAGGGACA GTAGTCAAAC GTGGAAATGT GCCTATGTCC AATGGAACAT CCATGCGGGG 481 AGCCATAGTA GCCGCATGTT GTACTTCTGA AACCGGAGGT GTTGGCGCAG AAAACACTGG 541 AGGTGCTTGA CCTTGATCAG ATAACCCGCT AAGATAAGCC AGAACCTGAT TGATCATCTC 601 TGGGGTAGGT TGGGGTGCCA TTTCCCTCAT TTGCACTTGT TCAGTTTCCC CATCCTCCCC 661 TTCT Predicted gene structure (within gDNA segment 30848 to 28300): Exon 1 29996 29333 ( 664 n); cDNA 1 664 ( 664 n); score: 0.894 MATCH C04HBa0077O05.1- SGN-E352401+ 0.894 664 1.000 C PGS_C04HBa0077O05.1-_SGN-E352401+ (29996 29333) Alignment (genomic DNA sequence = upper lines): AATCCGCTCT TATGGACTGA AACAAAGCTG AGTGGCATAT CTGGAAAGTT CACGAAACTT 29937 |||||||||| | ||||||| |||| || || |||||||||| ||||| ||| |||||||||| AATCCGCTCT TGAGGACTGA AACAGAGTTG AGTGGCATAT CTGGATAGTG CACGAAACTT 60 AGCCTCATAT GCAGTAACCG ACATCTTACC TTGCTCTAGG CTCAAGAATT CATCTCTTTT 29877 ||||||||| ||| |||| | ||| | |||| |||||||||| |||||||| | |||| ||||| AGCCTCATAA GCATTAACTG ACACCCTACC TTGCTCTAGG CTCAAGAACT CATCCCTTTT 120 CCTATCCCTC AAAGTTCGGG GGATATACTT CTCCATAGAC AAGCTAGAGA ATGATGCCCA 29817 | |||||||| ||||| |||| |||||||||| ||||||| || || ||| ||| |||| ||||| CTTATCCCTC AAAGTCCGGG GGATATACTT CTCCATAAAC AAACTATAGA ATGAGGCCCA 180 AGTCATAGGT GGTGCCTCTG TTGGTTGACA CTCCACATGC GACCGCCACC ACATTTTGGC 29757 |||||||||| | ||||||| |||||||||| ||| | ||| |||||||||| |||||| ||| AGTCATAGGT GATGCCTCTA TTGGTTGACA CTCGATATGT GACCGCCACC ACATTTGGGC 240 GTTCCCTTGA AACTGATAAG TCACAAACTC AACACCAAAC CGTTCTACTA TACCCATCTT 29697 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| GTTCCCTTGA AACTGATAAG TCACAAACTC CACACCAAAC CGTTCTACTA TACCCATCTT 300 GTGTAGTAGC TCATGAAACT CAACCAGAAA ATCGTATGCA TCCTCAGATT CAGCACCCTT 29637 |||||||||| || ||| | | |||||||||| ||| || ||| ||||| |||| |||||||||| GTGTAGTAGC TCGTGACAGT CAACCAGAAA ATCATAAGCA TCCTCCGATT CAGCACCCTT 360 GAAGACTGGA GGTTTCAATT TCAAGAACTT ACTGAAAAGT TCATGCTGAT CATTTGTCAT 29577 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGACCGGA GGTTTCAATT TCAAGAACTT ACTGAAAAGT TCATGCTGAT CATTTGTCAT 420 TATAGGCCCT GTAGTCAGAC GAGGAAATGT GCCTATTTAC AATGAGGCAT CCATGCAGGG 29517 |||||| | ||||||| || | |||||||| |||||| | | |||| ||| |||||| ||| TATAGGGACA GTAGTCAAAC GTGGAAATGT GCCTATGTCC AATGGAACAT CCATGCGGGG 480 AGCCACAGTA GTCGCATGTT GTACCTCCGG AGCCTGAGGT GCTGGTGCAG AAAACACTGG 29457 ||||| |||| | |||||||| |||| || | | || ||||| | ||| |||| |||||||||| AGCCATAGTA GCCGCATGTT GTACTTCTGA AACCGGAGGT GTTGGCGCAG AAAACACTGG 540 AGGTGTCTGG CCTTGATCAG ATAGCCCGCT AAGATAAGCA AGAACCTGAT TGATCATCTC 29397 ||||| || |||||||||| ||| |||||| ||||||||| |||||||||| |||||||||| AGGTGCTTGA CCTTGATCAG ATAACCCGCT AAGATAAGCC AGAACCTGAT TGATCATCTC 600 TGGGGTAGGT TGGGGTGGCA ATT-CCTCAT TCTGTACTTG CTCATTTTCC CTTTCCTCAC 29338 |||||||||| ||||||| || || |||||| | || ||||| ||| ||||| | ||||| | TGGGGTAGGT TGGGGTGCCA TTTCCCTCAT T-TGCACTTG TTCAGTTTCC CCATCCTCCC 659 CCTCT 29333 | ||| CTTCT 664 hqPGS_C04HBa0077O05.1-_SGN-E352401+ (29996 29333) ******************************************************************************** EST sequence 275 +strand 713 n (File: SGN-E349404+) 1 GGGGTTCTGT CCTCTAGAAT AAGAACCATT ATACTCTCCT CCCCTTCTAA ACCTCTTCGA 61 TGTCGATGTC GTGGTGAAGT CATCCGGTTT CACTCCTTCC ACCTCAATCA CAAAGTCTAC 121 CACCTCTTGA AAGGATGTTG CTGTTGCCGC TATCTGTAAG GCTGAAATCC GCAATTCTGA 181 TCTCAACCCC TTCACAAAAC GGCGGATCCG TTCTTGTGGA CTAAAACAGA GTTGGGTGGC 241 GTATCTGGAT AGTGCGCGAA ATTTAGCCTC ATACGCGTTT ACTGTCATCC TTCCCTGTTC 301 AAGACTCAAG AACTCATCCC TTTTCCTATC TCTCAAAGTC CTTGGGATAT ATTTCTCCAT 361 GAACAAACTA GAGAATGATT CCCAAGTCAT AGGTGGTGCC TCTGTTGGTT GACACTCAAC 421 ATGTGAACGC CACCACATCT TGGCGTTCCC TTGGAACTGA TAGCTCACGA ACTCGACGCC 481 AAACCTCTCT ACTATCCCCA TTTTGTGTAG TAGCTCATGA CAATCAACCA GAAAATCATA 541 AGCATCTTCA GATTCTGCAC CCTTGAAGAC TGGAGGTTTC AGTTTCAAGA ACTTACTGAA 601 AAGTTCATGT TGATCGTTTG TCATAATAGG CCCAGTAGTC AGACGTGGAA ATGTGCCTAT 661 TCCCAATGGT GCATCTATGC GGGGAGCCAT AGTAGCCGCA TGTCGTATCT CTG Predicted gene structure (within gDNA segment 32276 to 27942): Exon 1 30195 29490 ( 706 n); cDNA 7 711 ( 705 n); score: 0.864 MATCH C04HBa0077O05.1- SGN-E349404+ 0.864 706 0.990 C PGS_C04HBa0077O05.1-_SGN-E349404+ (30195 29490) Alignment (genomic DNA sequence = upper lines): CTGTCCTCTA GAGTAAGAAC CATTAAACTC ACCTCCCCTT CGAAAACTTT TTGATGTCGA 30136 |||||||||| || ||||||| ||||| |||| ||||||||| | ||| || | | |||||||| CTGTCCTCTA GAATAAGAAC CATTATACTC TCCTCCCCTT CTAAACCTCT TCGATGTCGA 66 TGCCATGGTG AAGTCATCTG GCTTCACTCC TTCCACCTCT ATCACGAAGT CCACCACTTC 30076 || | ||||| |||||||| | | |||||||| ||||||||| ||||| |||| | ||||| || TGTCGTGGTG AAGTCATCCG GTTTCACTCC TTCCACCTCA ATCACAAAGT CTACCACCTC 126 TTGAAAGGAT TTTGCCGTAG TCGCTACCTA TAAGGCTAAA AATCCGCAAT TCTGACCTCA 30016 |||||||||| |||| || | ||||| || ||||||| | |||||||||| ||||| |||| TTGAAAGGAT GTTGCTGTTG CCGCTATCTG TAAGGCT-GA AATCCGCAAT TCTGATCTCA 185 ACCCCTTCAC AAAACGGCAA ATCCGCTCTT ATGGACTGAA ACAAAGCTGA GTGGCATATC 29956 |||||||||| |||||||| ||||| |||| |||||| || ||| || || ||||| |||| ACCCCTTCAC AAAACGGCGG ATCCGTTCTT GTGGACTAAA ACAGAGTTGG GTGGCGTATC 245 TGGAAAGTTC ACGAAACTTA GCCTCATATG CAGTAACCGA CATCTTACCT TGCTCTAGGC 29896 |||| ||| | ||||| ||| |||||||| | | | || | |||| | || || || || | TGGATAGTGC GCGAAATTTA GCCTCATACG CGTTTACTGT CATCCTTCCC TGTTCAAGAC 305 TCAAGAATTC ATCTCTTTTC CTATCCCTCA AAGTTCGGGG GATATACTTC TCCATAGACA 29836 ||||||| || ||| |||||| ||||| |||| |||| | || |||||| ||| ||||| ||| TCAAGAACTC ATCCCTTTTC CTATCTCTCA AAGTCCTTGG GATATATTTC TCCATGAACA 365 AGCTAGAGAA TGATGCCCAA GTCATAGGTG GTGCCTCTGT TGGTTGACAC TCCACATGCG 29776 | |||||||| |||| ||||| |||||||||| |||||||||| |||||||||| || ||||| | AACTAGAGAA TGATTCCCAA GTCATAGGTG GTGCCTCTGT TGGTTGACAC TCAACATGTG 425 ACCGCCACCA CATTTTGGCG TTCCCTTGAA ACTGATAAGT CACAAACTCA ACACCAAACC 29716 | |||||||| ||| |||||| |||||||| | ||||||| | ||| ||||| || ||||||| AACGCCACCA CATCTTGGCG TTCCCTTGGA ACTGATAGCT CACGAACTCG ACGCCAAACC 485 GTTCTACTAT ACCCATCTTG TGTAGTAGCT CATGAAACTC AACCAGAAAA TCGTATGCAT 29656 |||||||| ||||| ||| |||||||||| ||||| | || |||||||||| || || |||| TCTCTACTAT CCCCATTTTG TGTAGTAGCT CATGACAATC AACCAGAAAA TCATAAGCAT 545 CCTCAGATTC AGCACCCTTG AAGACTGGAG GTTTCAATTT CAAGAACTTA CTGAAAAGTT 29596 | |||||||| ||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| CTTCAGATTC TGCACCCTTG AAGACTGGAG GTTTCAGTTT CAAGAACTTA CTGAAAAGTT 605 CATGCTGATC ATTTGTCATT ATAGGCCCTG TAGTCAGACG AGGAAATGTG CCTATTTACA 29536 |||| ||||| |||||||| |||||||| | |||||||||| ||||||||| |||||| || CATGTTGATC GTTTGTCATA ATAGGCCCAG TAGTCAGACG TGGAAATGTG CCTATTCCCA 665 ATGAGGCATC CATGCAGGGA GCCACAGTAG TCGCATGTTG TACCTC 29490 ||| ||||| |||| |||| |||| ||||| ||||||| | || ||| ATGGTGCATC TATGCGGGGA GCCATAGTAG CCGCATGTCG TATCTC 711 hqPGS_C04HBa0077O05.1-_SGN-E349404+ (30195 29490) ******************************************************************************** EST sequence 236 +strand 679 n (File: SGN-E351625+) 1 GGGGTTCTGT CCTCTAGAAT AAGAACCATT ATACTCTCCT CCCCTTCTAA ACCTCTTCGA 61 TGTCGATGTC GTGGTGAAGT CATCCGGTTT CACTCCTTCC ACCTCAATCA CAAAGTCTAC 121 CACCTCTTGA AAGGATGTTG CTGTTGCCGC TATCTGTAAG GCTGAAATCC GCAATTCTGA 181 TCTCAACCCC TTCACAAAAC GGCGGATCCG TTCTTGTGGA CTAAAACAGA GTTGGGTGGC 241 GTATCTGGAT AGTGCGCGAA ATTTAGCCTC ATACGCGTTT ACTGTCATCC TTCCCTGTTC 301 AAGACTCAAG AACTCATCCC TTTTCCTATC TCTCAAAGTC CTTGGGATAT ATTTCTCCAT 361 GAACAAACTA GAGAATGATT CCCAAGTCAT AGGTGGTGCC TCTGTTGGTT GACACTCAAC 421 ATGTGAACGC CACCACATCT TGGCGTTCCC TTGGAACTGA TAGCTCACGA ACTCGACGCC 481 AAACCTCTCT ACTATCCCCA TTTTGTGTAG TAGCTCATGA CAATCAACCA GAAAATCATA 541 AGCATCTTCA GATTCTGCAC CCTTGAAGAC TGGAGGTTTC AGTTTCAAGA ACTTACTGAA 601 AAGTTCATGT TGATCGTTTG TCATAATAAG CCCAGTAGTC AGACGTGGAA ATGTGCCTAT 661 TCCCAATGGT GCATCTATG Predicted gene structure (within gDNA segment 32276 to 28282): Exon 1 30195 29522 ( 674 n); cDNA 7 679 ( 673 n); score: 0.864 MATCH C04HBa0077O05.1- SGN-E351625+ 0.864 674 0.993 C PGS_C04HBa0077O05.1-_SGN-E351625+ (30195 29522) Alignment (genomic DNA sequence = upper lines): CTGTCCTCTA GAGTAAGAAC CATTAAACTC ACCTCCCCTT CGAAAACTTT TTGATGTCGA 30136 |||||||||| || ||||||| ||||| |||| ||||||||| | ||| || | | |||||||| CTGTCCTCTA GAATAAGAAC CATTATACTC TCCTCCCCTT CTAAACCTCT TCGATGTCGA 66 TGCCATGGTG AAGTCATCTG GCTTCACTCC TTCCACCTCT ATCACGAAGT CCACCACTTC 30076 || | ||||| |||||||| | | |||||||| ||||||||| ||||| |||| | ||||| || TGTCGTGGTG AAGTCATCCG GTTTCACTCC TTCCACCTCA ATCACAAAGT CTACCACCTC 126 TTGAAAGGAT TTTGCCGTAG TCGCTACCTA TAAGGCTAAA AATCCGCAAT TCTGACCTCA 30016 |||||||||| |||| || | ||||| || ||||||| | |||||||||| ||||| |||| TTGAAAGGAT GTTGCTGTTG CCGCTATCTG TAAGGCT-GA AATCCGCAAT TCTGATCTCA 185 ACCCCTTCAC AAAACGGCAA ATCCGCTCTT ATGGACTGAA ACAAAGCTGA GTGGCATATC 29956 |||||||||| |||||||| ||||| |||| |||||| || ||| || || ||||| |||| ACCCCTTCAC AAAACGGCGG ATCCGTTCTT GTGGACTAAA ACAGAGTTGG GTGGCGTATC 245 TGGAAAGTTC ACGAAACTTA GCCTCATATG CAGTAACCGA CATCTTACCT TGCTCTAGGC 29896 |||| ||| | ||||| ||| |||||||| | | | || | |||| | || || || || | TGGATAGTGC GCGAAATTTA GCCTCATACG CGTTTACTGT CATCCTTCCC TGTTCAAGAC 305 TCAAGAATTC ATCTCTTTTC CTATCCCTCA AAGTTCGGGG GATATACTTC TCCATAGACA 29836 ||||||| || ||| |||||| ||||| |||| |||| | || |||||| ||| ||||| ||| TCAAGAACTC ATCCCTTTTC CTATCTCTCA AAGTCCTTGG GATATATTTC TCCATGAACA 365 AGCTAGAGAA TGATGCCCAA GTCATAGGTG GTGCCTCTGT TGGTTGACAC TCCACATGCG 29776 | |||||||| |||| ||||| |||||||||| |||||||||| |||||||||| || ||||| | AACTAGAGAA TGATTCCCAA GTCATAGGTG GTGCCTCTGT TGGTTGACAC TCAACATGTG 425 ACCGCCACCA CATTTTGGCG TTCCCTTGAA ACTGATAAGT CACAAACTCA ACACCAAACC 29716 | |||||||| ||| |||||| |||||||| | ||||||| | ||| ||||| || ||||||| AACGCCACCA CATCTTGGCG TTCCCTTGGA ACTGATAGCT CACGAACTCG ACGCCAAACC 485 GTTCTACTAT ACCCATCTTG TGTAGTAGCT CATGAAACTC AACCAGAAAA TCGTATGCAT 29656 |||||||| ||||| ||| |||||||||| ||||| | || |||||||||| || || |||| TCTCTACTAT CCCCATTTTG TGTAGTAGCT CATGACAATC AACCAGAAAA TCATAAGCAT 545 CCTCAGATTC AGCACCCTTG AAGACTGGAG GTTTCAATTT CAAGAACTTA CTGAAAAGTT 29596 | |||||||| ||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| CTTCAGATTC TGCACCCTTG AAGACTGGAG GTTTCAGTTT CAAGAACTTA CTGAAAAGTT 605 CATGCTGATC ATTTGTCATT ATAGGCCCTG TAGTCAGACG AGGAAATGTG CCTATTTACA 29536 |||| ||||| |||||||| ||| |||| | |||||||||| ||||||||| |||||| || CATGTTGATC GTTTGTCATA ATAAGCCCAG TAGTCAGACG TGGAAATGTG CCTATTCCCA 665 ATGAGGCATC CATG 29522 ||| ||||| ||| ATGGTGCATC TATG 679 hqPGS_C04HBa0077O05.1-_SGN-E351625+ (30195 29522) ******************************************************************************** EST sequence 287 +strand 612 n (File: SGN-E357065+) 1 GGGTTCTGTC CTCTAGAATA AGAACCATTA TACTCTCCTC CCCTTCTAAA CCTCTTCGAT 61 GTCGATGTCG TGGTGAAGTC ATCCGGTTTC ACTCCTTCCA CCTCAATCAC AAAGTCTACC 121 ACCTCTTGAA AGGATGTTGC TGTTGCCGCT ATCTGTAAGG CTGAAATCCG CAATTCTGAT 181 CTCAACCCCT TCACAAAACG GCGGATCCGT TCTTGTGGAC TAAAACAGAG TTGGGTGGCG 241 TATCTGGATA GTGCGCGAAA TTTAGCCTCA TACGCGTTTA CTGTCATCCT TCCCTGTTCA 301 AGACTCAAGA ACTCATCCCT TTTCCTATCT CTCAAAGTCC TTGGGATATA TTTCTCCATG 361 AACAAACTAG AGAATGATTC CCAAGTCATA GGTGGTGCCT CTGTTGGTTG ACACTCAACA 421 TGTGAACGCC ACCACATCTT GGCGTTCCCT TGGAACTGAT AGCTCACGAA CTCGACGCCA 481 AACCTCTCTA CTATCCCCAT TTTGTGTAGT AGCTCATGAC AATCAACCAG AAAATCATAA 541 GCATCTTCAG ATTCTGCACC CTTGAAGACT GGAGGTTTCA GTTTCAAGAA CTTACTGAAA 601 AGTCATGTTG AT Predicted gene structure (within gDNA segment 32266 to 28897): Exon 1 30195 29587 ( 609 n); cDNA 6 612 ( 607 n); score: 0.864 MATCH C04HBa0077O05.1- SGN-E357065+ 0.864 609 0.995 C PGS_C04HBa0077O05.1-_SGN-E357065+ (30195 29587) Alignment (genomic DNA sequence = upper lines): CTGTCCTCTA GAGTAAGAAC CATTAAACTC ACCTCCCCTT CGAAAACTTT TTGATGTCGA 30136 |||||||||| || ||||||| ||||| |||| ||||||||| | ||| || | | |||||||| CTGTCCTCTA GAATAAGAAC CATTATACTC TCCTCCCCTT CTAAACCTCT TCGATGTCGA 65 TGCCATGGTG AAGTCATCTG GCTTCACTCC TTCCACCTCT ATCACGAAGT CCACCACTTC 30076 || | ||||| |||||||| | | |||||||| ||||||||| ||||| |||| | ||||| || TGTCGTGGTG AAGTCATCCG GTTTCACTCC TTCCACCTCA ATCACAAAGT CTACCACCTC 125 TTGAAAGGAT TTTGCCGTAG TCGCTACCTA TAAGGCTAAA AATCCGCAAT TCTGACCTCA 30016 |||||||||| |||| || | ||||| || ||||||| | |||||||||| ||||| |||| TTGAAAGGAT GTTGCTGTTG CCGCTATCTG TAAGGCT-GA AATCCGCAAT TCTGATCTCA 184 ACCCCTTCAC AAAACGGCAA ATCCGCTCTT ATGGACTGAA ACAAAGCTGA GTGGCATATC 29956 |||||||||| |||||||| ||||| |||| |||||| || ||| || || ||||| |||| ACCCCTTCAC AAAACGGCGG ATCCGTTCTT GTGGACTAAA ACAGAGTTGG GTGGCGTATC 244 TGGAAAGTTC ACGAAACTTA GCCTCATATG CAGTAACCGA CATCTTACCT TGCTCTAGGC 29896 |||| ||| | ||||| ||| |||||||| | | | || | |||| | || || || || | TGGATAGTGC GCGAAATTTA GCCTCATACG CGTTTACTGT CATCCTTCCC TGTTCAAGAC 304 TCAAGAATTC ATCTCTTTTC CTATCCCTCA AAGTTCGGGG GATATACTTC TCCATAGACA 29836 ||||||| || ||| |||||| ||||| |||| |||| | || |||||| ||| ||||| ||| TCAAGAACTC ATCCCTTTTC CTATCTCTCA AAGTCCTTGG GATATATTTC TCCATGAACA 364 AGCTAGAGAA TGATGCCCAA GTCATAGGTG GTGCCTCTGT TGGTTGACAC TCCACATGCG 29776 | |||||||| |||| ||||| |||||||||| |||||||||| |||||||||| || ||||| | AACTAGAGAA TGATTCCCAA GTCATAGGTG GTGCCTCTGT TGGTTGACAC TCAACATGTG 424 ACCGCCACCA CATTTTGGCG TTCCCTTGAA ACTGATAAGT CACAAACTCA ACACCAAACC 29716 | |||||||| ||| |||||| |||||||| | ||||||| | ||| ||||| || ||||||| AACGCCACCA CATCTTGGCG TTCCCTTGGA ACTGATAGCT CACGAACTCG ACGCCAAACC 484 GTTCTACTAT ACCCATCTTG TGTAGTAGCT CATGAAACTC AACCAGAAAA TCGTATGCAT 29656 |||||||| ||||| ||| |||||||||| ||||| | || |||||||||| || || |||| TCTCTACTAT CCCCATTTTG TGTAGTAGCT CATGACAATC AACCAGAAAA TCATAAGCAT 544 CCTCAGATTC AGCACCCTTG AAGACTGGAG GTTTCAATTT CAAGAACTTA CTGAAAAGTT 29596 | |||||||| ||||||||| |||||||||| |||||| ||| |||||||||| |||||||| | CTTCAGATTC TGCACCCTTG AAGACTGGAG GTTTCAGTTT CAAGAACTTA CTGAAAAG-T 603 CATGCTGAT 29587 |||| |||| CATGTTGAT 612 hqPGS_C04HBa0077O05.1-_SGN-E357065+ (30195 29587) ******************************************************************************** EST sequence 190 +strand 524 n (File: SGN-E352365+) 1 GGGGTTCTGT CCTCTAGAAT AAGAACCATT ATACTCTCCT CCCCTTCTAA ACCTCTTCGA 61 TGTCGATGTC GTGGTGAAGT CATCCGGTTT CACTCCTTCC ACCTCAATCA CAAAGTCTAC 121 CACCTCTTGA AAGGATGTTG CTGTTGCCGC TATCTGTAAG GCTGAAATCC GCAATTCTGA 181 TCTCAACCCC TTCACAAAAC GGCGGATCCG TTCTTGTGGA CTAAAACAGA GTTGGGTGGC 241 GTATCTGGAT AGTGCGCGAA ATTTAGCCTC ATACGCGTTT ACTGTCATCC TTCCCTGTTC 301 AAGACTCAAG AACTCATCCC TTTTCCTATC TCTCAAAGTC CTTGGGATAT ATTTCTCCAT 361 GAACAAACTA GAGAATGATT CCCAAGTCAT AGGTGGTGCC TCTGTTGGTT GACACTCAAC 421 ATGTGAACGC CACCACATCT TGGCGTTCCC TTGGAACTGA TAGCTCACGA ACTCGACGCC 481 AAACCTCTCT ACTATCCCCA TTTTGTGTAG TAGCTCATGA CAAT Predicted gene structure (within gDNA segment 32276 to 28104): Exon 1 30195 29681 ( 515 n); cDNA 7 520 ( 514 n); score: 0.856 MATCH C04HBa0077O05.1- SGN-E352365+ 0.856 515 0.983 C PGS_C04HBa0077O05.1-_SGN-E352365+ (30195 29681) Alignment (genomic DNA sequence = upper lines): CTGTCCTCTA GAGTAAGAAC CATTAAACTC ACCTCCCCTT CGAAAACTTT TTGATGTCGA 30136 |||||||||| || ||||||| ||||| |||| ||||||||| | ||| || | | |||||||| CTGTCCTCTA GAATAAGAAC CATTATACTC TCCTCCCCTT CTAAACCTCT TCGATGTCGA 66 TGCCATGGTG AAGTCATCTG GCTTCACTCC TTCCACCTCT ATCACGAAGT CCACCACTTC 30076 || | ||||| |||||||| | | |||||||| ||||||||| ||||| |||| | ||||| || TGTCGTGGTG AAGTCATCCG GTTTCACTCC TTCCACCTCA ATCACAAAGT CTACCACCTC 126 TTGAAAGGAT TTTGCCGTAG TCGCTACCTA TAAGGCTAAA AATCCGCAAT TCTGACCTCA 30016 |||||||||| |||| || | ||||| || ||||||| | |||||||||| ||||| |||| TTGAAAGGAT GTTGCTGTTG CCGCTATCTG TAAGGCT-GA AATCCGCAAT TCTGATCTCA 185 ACCCCTTCAC AAAACGGCAA ATCCGCTCTT ATGGACTGAA ACAAAGCTGA GTGGCATATC 29956 |||||||||| |||||||| ||||| |||| |||||| || ||| || || ||||| |||| ACCCCTTCAC AAAACGGCGG ATCCGTTCTT GTGGACTAAA ACAGAGTTGG GTGGCGTATC 245 TGGAAAGTTC ACGAAACTTA GCCTCATATG CAGTAACCGA CATCTTACCT TGCTCTAGGC 29896 |||| ||| | ||||| ||| |||||||| | | | || | |||| | || || || || | TGGATAGTGC GCGAAATTTA GCCTCATACG CGTTTACTGT CATCCTTCCC TGTTCAAGAC 305 TCAAGAATTC ATCTCTTTTC CTATCCCTCA AAGTTCGGGG GATATACTTC TCCATAGACA 29836 ||||||| || ||| |||||| ||||| |||| |||| | || |||||| ||| ||||| ||| TCAAGAACTC ATCCCTTTTC CTATCTCTCA AAGTCCTTGG GATATATTTC TCCATGAACA 365 AGCTAGAGAA TGATGCCCAA GTCATAGGTG GTGCCTCTGT TGGTTGACAC TCCACATGCG 29776 | |||||||| |||| ||||| |||||||||| |||||||||| |||||||||| || ||||| | AACTAGAGAA TGATTCCCAA GTCATAGGTG GTGCCTCTGT TGGTTGACAC TCAACATGTG 425 ACCGCCACCA CATTTTGGCG TTCCCTTGAA ACTGATAAGT CACAAACTCA ACACCAAACC 29716 | |||||||| ||| |||||| |||||||| | ||||||| | ||| ||||| || ||||||| AACGCCACCA CATCTTGGCG TTCCCTTGGA ACTGATAGCT CACGAACTCG ACGCCAAACC 485 GTTCTACTAT ACCCATCTTG TGTAGTAGCT CATGA 29681 |||||||| ||||| ||| |||||||||| ||||| TCTCTACTAT CCCCATTTTG TGTAGTAGCT CATGA 520 hqPGS_C04HBa0077O05.1-_SGN-E352365+ (30195 29681) ******************************************************************************** EST sequence 284 +strand 790 n (File: SGN-E356912+) 1 CAGGATCAAA CAATACGGAA GCCATGCAAT CACAAACTAG AAGATTACCT GTGATGACAG 61 CATCAGATGC CTCCGCTTCA GACCGCCCAG GGAAAGCGTA ACAATGGGCC CTATCGTTTG 121 TCTGCCCATT GCCCCTACCA TGTTGTGATG TAGTGGCCCC AGTTTGCCCA TTACCTCTGC 181 CGTTTTGGTG ACCACCATTA CCTCGACCAC CACGTCCTCC AGAATAACGG CCTCTACCAT 241 GACCACCTCT ACCTCTAGCT ATTGGGGGTC TATAACTTGG TCCAGGACAA TTTATCCTAA 301 TATGTCCAAT CTCCCCACAT CCATAACATT CTCTGGAGTC ACTCATAGGC CCCTTGGAGA 361 AGTGTTGACC GGTCTGAGGT GGACCCCCAA CTACAGTCTG TAGTGAAGAC TGAATGGGTC 421 GAGCCGAGTA ACCTCCGGAA CCTTGTCCTC TAGAGTAAGA ACCCTTAAAC TCACCTCCCT 481 TTCGAAACCT CTTTGATGTT GATGTCGTGG TGAAGTCGTC TGGCTTCACT CCTTCCACTT 541 CTATCACAAA GTCTACCACT TCTTGGAAGG ATTTTGCCGT TGCCGCTACC TGTAAGGCCG 601 AAATCCGCAA TTCTGACCTC AACCCCTTCA CAAACCGGAG AATCCGCTCT TGAGGACTGA 661 AACAGAGTTG AGTGGCATAT CCGGATAGTG CACGGAACTT AGCCTCATAA GCATTAACCG 721 ACATCCTACC TTGCTCTAGG CTCAGGAACT CATCTCTTTT CCTATCCCTC AAAGTCCGGG 781 GGATATACTT Predicted gene structure (within gDNA segment 31232 to 29102): Exon 1 30632 29847 ( 786 n); cDNA 1 790 ( 790 n); score: 0.857 MATCH C04HBa0077O05.1- SGN-E356912+ 0.857 786 0.995 C PGS_C04HBa0077O05.1-_SGN-E356912+ (30632 29847) Alignment (genomic DNA sequence = upper lines): CAGGATCAAA CAATACAGAA GCCATGCAAT CACAAACCAA AAGATTACCT GTGATAACAA 30573 |||||||||| |||||| ||| |||||||||| ||||||| | |||||||||| ||||| ||| CAGGATCAAA CAATACGGAA GCCATGCAAT CACAAACTAG AAGATTACCT GTGATGACAG 60 CATCAGATGT CTCCGCTTCA GACCGCCCAG GGAAGGCGTA ACAATGGGCC CTATCACCTG 30513 ||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| ||||| || CATCAGATGC CTCCGCTTCA GACCGCCCAG GGAAAGCGTA ACAATGGGCC CTATCGTTTG 120 TTTGCCCGTT ACCCCAACCA TGCTGCACCG CA--G---CC AGTTTGCCCG CCACCCCGGT 30458 | ||||| || |||| |||| || || | | | || ||||||||| ||| | | TCTGCCCATT GCCCCTACCA TGTTGTGATG TAGTGGCCCC AGTTTGCCCA TTACCTCTGC 180 TGGTTTGGTG ACCATCATTA CCTCGGCCAC CACGTTCTCC AGGATAACGA CCTCTTCTAT 30398 | ||||||| |||| ||||| ||||| |||| ||||| |||| || |||||| ||||| | || CGTTTTGGTG ACCACCATTA CCTCGACCAC CACGTCCTCC AGAATAACGG CCTCTACCAT 240 GACCACCTCT ACCTCTAACT ATTGGAGGTC TGTAACTCTG TTTTGGACAA TACCTCTTAA 30338 |||||||||| ||||||| || ||||| |||| | ||||| | | |||||| | || ||| GACCACCTCT ACCTCTAGCT ATTGGGGGTC TATAACTTGG TCCAGGACAA TTTATCCTAA 300 TGTGTCCAGT CTCCCCACAT CCATAACACT CTCTGGATTT AAGCATAGGT CTCTCAGAGA 30278 | |||||| | |||||||||| |||||||| | ||||||| | | |||||| | || |||| TATGTCCAAT CTCCCCACAT CCATAACATT CTCTGGAGTC ACTCATAGGC CCCTTGGAGA 360 AGTGTTGACC GGTCTAAGGT GGACCCCCAA CTACAGTCTG TAGTGAAGAC TGAATTGGTC 30218 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| ||||| |||| AGTGTTGACC GGTCTGAGGT GGACCCCCAA CTACAGTCTG TAGTGAAGAC TGAATGGGTC 420 GGACTGAGTA ACCTCCTGAA CCCTGTCCTC TAGAGTAAGA ACCATTAAAC TCACCTCCCC 30158 | | ||||| |||||| ||| || ||||||| |||||||||| ||| |||||| ||||||||| GAGCCGAGTA ACCTCCGGAA CCTTGTCCTC TAGAGTAAGA ACCCTTAAAC TCACCTCCCT 480 TTCGAAAACT TTTTGATGTC GATGCCATGG TGAAGTCATC TGGCTTCACT CCTTCCACCT 30098 ||||||| || |||||||| |||| | ||| ||||||| || |||||||||| |||||||| | TTCGAAACCT CTTTGATGTT GATGTCGTGG TGAAGTCGTC TGGCTTCACT CCTTCCACTT 540 CTATCACGAA GTCCACCACT TCTTGAAAGG ATTTTGCCGT AGTCGCTACC TATAAGGCTA 30038 ||||||| || ||| |||||| ||||| |||| |||||||||| | ||||||| | |||||| CTATCACAAA GTCTACCACT TCTTGGAAGG ATTTTGCCGT TGCCGCTACC TGTAAGGC-C 599 AAAATCCGCA ATTCTGACCT CAACCCCTTC ACAAAACGGC AAATCCGCTC TTATGGACTG 29978 ||||||||| |||||||||| |||||||||| ||||| ||| ||||||||| || |||||| GAAATCCGCA ATTCTGACCT CAACCCCTTC ACAAACCGGA GAATCCGCTC TTGAGGACTG 659 AAACAAAGCT GAGTGGCATA TCTGGAAAGT TCACGAAACT TAGCCTCATA TGCAGTAACC 29918 ||||| || | |||||||||| || ||| ||| |||| |||| |||||||||| ||| ||||| AAACAGAGTT GAGTGGCATA TCCGGATAGT GCACGGAACT TAGCCTCATA AGCATTAACC 719 GACATCTTAC CTTGCTCTAG GCTCAAGAAT TCATCTCTTT TCCTATCCCT CAAAGTTCGG 29858 |||||| ||| |||||||||| ||||| ||| |||||||||| |||||||||| |||||| ||| GACATCCTAC CTTGCTCTAG GCTCAGGAAC TCATCTCTTT TCCTATCCCT CAAAGTCCGG 779 GGGATATACT T 29847 |||||||||| | GGGATATACT T 790 hqPGS_C04HBa0077O05.1-_SGN-E356912+ (30632 29847) ******************************************************************************** EST sequence 277 +strand 698 n (File: SGN-E356209+) 1 TTCAGACCGC CCAGGGAAAG CGTAACAATG GGCCCTATCG TTCGTCTGTC CGTTGCCCCT 61 ACCATGTTGT GATGTAGTGG CCCCAGTTTG CCCATTACCT CTGCCATTTT GGTGACCACC 121 ATTACCTCGA CCACCACGTC CTCCAGAATA ACGGCCTCTA CCATGACCAC CTCTACCTCT 181 AGCTATTGGG GGTCTATAAC TTTGTCTGGG ACAATTTTTC CTAATATGTC CAATCTCCCC 241 ACATCCATAA CATTCTCTGG AGTCAAGCAT AGGCCCCTCG GAGAAGTGTT AACCGGTCTG 301 AGGTGGTCTC CCAACTACAG TCTGTAGTGA AGACTGAATT GGTCGGACTG AGTAACTTCC 361 CGAACCCTGT CCTCTAGTGT AAGAACCATT AAACTCACCT CCCTTCCGAA ACCTTTTTGA 421 TGTCGATGTT GTGGTGAAGT CGTCTGGCTT CACTCCTTCC ACTTCTATCA CAAAGTCTAC 481 CACTTCTTGG AAGGATTTTG CCGTTGCCGC TATCTGTAAG GACGAAATCC GCAATTCTGA 541 CCTCAACCCC TTCACAAACC GGCGAATCCG CTCTTGAGGA CTGAAACAGA GTTGAGTGGC 601 ATATCTGGAT AGTGCACGAA ACTTAGCCTC ATAAGCATTA ACCGACATCC TACCTTGCTC 661 TAGGCTCAAG AACTCATCCC TTTTCCTATC CCTCAAAG Predicted gene structure (within gDNA segment 31156 to 29253): Exon 1 30479 29863 ( 617 n); cDNA 83 698 ( 616 n); score: 0.882 MATCH C04HBa0077O05.1- SGN-E356209+ 0.882 617 0.884 C PGS_C04HBa0077O05.1-_SGN-E356209+ (30479 29863) Alignment (genomic DNA sequence = upper lines): CCAGTTTGCC CGCCACCCCG GTTGGTTTGG TGACCATCAT TACCTCGGCC ACCACGTTCT 30420 |||||||||| | ||| | | ||||| |||||| ||| ||||||| || ||||||| || CCAGTTTGCC CATTACCTCT GCCATTTTGG TGACCACCAT TACCTCGACC ACCACGTCCT 142 CCAGGATAAC GACCTCTTCT ATGACCACCT CTACCTCTAA CTATTGGAGG TCTGTAACTC 30360 |||| ||||| | ||||| | |||||||||| ||||||||| ||||||| || ||| ||||| CCAGAATAAC GGCCTCTACC ATGACCACCT CTACCTCTAG CTATTGGGGG TCTATAACTT 202 TGTTTTGGAC AATACCTCTT AATGTGTCCA GTCTCCCCAC ATCCATAACA CTCTCTGGAT 30300 ||| | |||| ||| || | ||| |||||| ||||||||| |||||||||| |||||||| TGTCTGGGAC AATTTTTCCT AATATGTCCA ATCTCCCCAC ATCCATAACA TTCTCTGGAG 262 TTAAGCATAG GTCTCTCAGA GAAGTGTTGA CCGGTCTAAG GTGGACCCCC AACTACAGTC 30240 | |||||||| | | ||| || |||||||| | ||||||| || |||| | ||| |||||||||| TCAAGCATAG GCCCCTCGGA GAAGTGTTAA CCGGTCTGAG GTGGTCTCCC AACTACAGTC 322 TGTAGTGAAG ACTGAATTGG TCGGACTGAG TAACCTCCTG AACCCTGTCC TCTAGAGTAA 30180 |||||||||| |||||||||| |||||||||| |||| ||| | |||||||||| ||||| |||| TGTAGTGAAG ACTGAATTGG TCGGACTGAG TAACTTCCCG AACCCTGTCC TCTAGTGTAA 382 GAACCATTAA ACTCACCTCC CCTTCGAAAA CTTTTTGATG TCGATGCCAT GGTGAAGTCA 30120 |||||||||| |||||||||| | | ||||| |||||||||| |||||| | ||||||||| GAACCATTAA ACTCACCTCC CTTCCGAAAC CTTTTTGATG TCGATGTTGT GGTGAAGTCG 442 TCTGGCTTCA CTCCTTCCAC CTCTATCACG AAGTCCACCA CTTCTTGAAA GGATTTTGCC 30060 |||||||||| |||||||||| |||||||| ||||| |||| ||||||| || |||||||||| TCTGGCTTCA CTCCTTCCAC TTCTATCACA AAGTCTACCA CTTCTTGGAA GGATTTTGCC 502 GTAGTCGCTA CCTATAAGGC TAAAAATCCG CAATTCTGAC CTCAACCCCT TCACAAAACG 30000 || | ||||| || ||||| ||||||| |||||||||| |||||||||| ||||||| || GTTGCCGCTA TCTGTAAGG- ACGAAATCCG CAATTCTGAC CTCAACCCCT TCACAAACCG 561 GCAAATCCGC TCTTATGGAC TGAAACAAAG CTGAGTGGCA TATCTGGAAA GTTCACGAAA 29940 || ||||||| |||| |||| ||||||| || ||||||||| |||||||| | || ||||||| GCGAATCCGC TCTTGAGGAC TGAAACAGAG TTGAGTGGCA TATCTGGATA GTGCACGAAA 621 CTTAGCCTCA TATGCAGTAA CCGACATCTT ACCTTGCTCT AGGCTCAAGA ATTCATCTCT 29880 |||||||||| || ||| ||| |||||||| | |||||||||| |||||||||| | ||||| || CTTAGCCTCA TAAGCATTAA CCGACATCCT ACCTTGCTCT AGGCTCAAGA ACTCATCCCT 681 TTTCCTATCC CTCAAAG 29863 |||||||||| ||||||| TTTCCTATCC CTCAAAG 698 hqPGS_C04HBa0077O05.1-_SGN-E356209+ (30479 29863) ******************************************************************************** EST sequence 228 +strand 763 n (File: SGN-E214046+) 1 ACGAATAGGC ATATCAAGAA ATTCACAATG TAAATTTAGA CCATTAGCAA ATGAGGAAGA 61 TACATAAGAA AACGTGGATC CAGGATCAAA CAATACGGAA GCCATGCAAT CACAAACAAG 121 AAGATTACCT GTGATGACAG CATCAGATGC CTCCGCTTTA GACCGCCCAG GGAAAGCGTA 181 ACAATGGGCC CTATAGTTTG TTTGTCCATT GCCCCTACCA TGTCGTGATG TAGTGGCCCC 241 AGTTTGTCCA TTACCTCTGC CGTTTTGGTG ACCACCATTG CCTCGACCAC CACGTCCTCC 301 AAAATAACGG CCTCTACCAT GACAACCTCT ACCTCTAACT ATTGGGGGTC TATAACTTGG 361 TCCGGGAAAA TTTCTCCTAA TATGTCCAAT CTCCCCACAT CCATAACATT CTCTAGAGTC 421 ACTCATAGGC CCCTCGGAGA AGTGTTGACC GGTCTGAGGT GGACCCCCAA CTACAGTTTG 481 TAGTGAAGAC TGAATGGGTC GAACTGAGTA ACCTCCAGAA CCTTGTCCTC TAGAGTAAGA 541 ACCCTTAAAC TCATCTCCCC TTTGAAACCT CATCGATGTC GATGTCGTGG TGAAGTCGTC 601 TGGTTTCACT CCTTCCACTT CTATCAAAAA GTCTACCACT TCTTGGAAGG ATTTTGCCGT 661 TGCCGCTACC TGTAAGGGCG AAATCCGCAA TTCTGACCTC AACCCCTTCA CAACCGGCGA 721 ATCCGCTCTT GAGGGACTGA ACAGAGTTGA GTGGCATATC TGG Predicted gene structure (within gDNA segment 31483 to 28894): Exon 1 30712 29953 ( 760 n); cDNA 1 763 ( 763 n); score: 0.845 MATCH C04HBa0077O05.1- SGN-E214046+ 0.845 760 0.996 C PGS_C04HBa0077O05.1-_SGN-E214046+ (30712 29953) Alignment (genomic DNA sequence = upper lines): ACGAATAGGC ATGTCAAGCA ATTCACAATG TAAATTAAGA CCATTAGCAA ATGAGGAAGA 30653 |||||||||| || ||||| | |||||||||| |||||| ||| |||||||||| |||||||||| ACGAATAGGC ATATCAAGAA ATTCACAATG TAAATTTAGA CCATTAGCAA ATGAGGAAGA 60 TACATAAGAA AATGTGGATC CAGGATCAAA CAATACAGAA GCCATGCAAT CACAAACCAA 30593 |||||||||| || ||||||| |||||||||| |||||| ||| |||||||||| ||||||| | TACATAAGAA AACGTGGATC CAGGATCAAA CAATACGGAA GCCATGCAAT CACAAACAAG 120 AAGATTACCT GTGATAACAA CATCAGATGT CTCCGCTTCA GACCGCCCAG GGAAGGCGTA 30533 |||||||||| ||||| ||| ||||||||| |||||||| | |||||||||| |||| ||||| AAGATTACCT GTGATGACAG CATCAGATGC CTCCGCTTTA GACCGCCCAG GGAAAGCGTA 180 ACAATGGGCC CTATCACCTG TTTGCCCGTT ACCCCAACCA TG-C----TG CACCGCAGCC 30478 |||||||||| |||| || |||| || || |||| |||| || | || | | || ACAATGGGCC CTATAGTTTG TTTGTCCATT GCCCCTACCA TGTCGTGATG TAGTGGCCCC 240 AGTTTGCCCG CCACCCCGGT TGGTTTGGTG ACCATCATTA CCTCGGCCAC CACGTTCTCC 30418 |||||| || ||| | | | ||||||| |||| |||| ||||| |||| ||||| |||| AGTTTGTCCA TTACCTCTGC CGTTTTGGTG ACCACCATTG CCTCGACCAC CACGTCCTCC 300 AGGATAACGA CCTCTTCTAT GACCACCTCT ACCTCTAACT ATTGGAGGTC TGTAACTCTG 30358 | |||||| ||||| | || ||| |||||| |||||||||| ||||| |||| | ||||| | AAAATAACGG CCTCTACCAT GACAACCTCT ACCTCTAACT ATTGGGGGTC TATAACTTGG 360 TTTTGGACAA TACCTCTTAA TGTGTCCAGT CTCCCCACAT CCATAACACT CTCTGGATTT 30298 | ||| || | ||| ||| | |||||| | |||||||||| |||||||| | |||| || | TCCGGGAAAA TTTCTCCTAA TATGTCCAAT CTCCCCACAT CCATAACATT CTCTAGAGTC 420 AAGCATAGGT CTCTCAGAGA AGTGTTGACC GGTCTAAGGT GGACCCCCAA CTACAGTCTG 30238 | |||||| | ||| |||| |||||||||| ||||| |||| |||||||||| ||||||| || ACTCATAGGC CCCTCGGAGA AGTGTTGACC GGTCTGAGGT GGACCCCCAA CTACAGTTTG 480 TAGTGAAGAC TGAATTGGTC GGACTGAGTA ACCTCCTGAA CCCTGTCCTC TAGAGTAAGA 30178 |||||||||| ||||| |||| | |||||||| |||||| ||| || ||||||| |||||||||| TAGTGAAGAC TGAATGGGTC GAACTGAGTA ACCTCCAGAA CCTTGTCCTC TAGAGTAAGA 540 ACCATTAAAC TCACCTCCCC TTCGAAAACT TTTTGATGTC GATGCCATGG TGAAGTCATC 30118 ||| |||||| ||| |||||| || |||| || | |||||| |||| | ||| ||||||| || ACCCTTAAAC TCATCTCCCC TTTGAAACCT CATCGATGTC GATGTCGTGG TGAAGTCGTC 600 TGGCTTCACT CCTTCCACCT CTATCACGAA GTCCACCACT TCTTGAAAGG ATTTTGCCGT 30058 ||| |||||| |||||||| | |||||| || ||| |||||| ||||| |||| |||||||||| TGGTTTCACT CCTTCCACTT CTATCAAAAA GTCTACCACT TCTTGGAAGG ATTTTGCCGT 660 AGTCGCTACC TATAAGGCTA AAAATCCGCA ATTCTGACCT CAACCCCTTC ACAAAACGGC 29998 | ||||||| | ||||| ||||||||| |||||||||| |||||||||| || || |||| TGCCGCTACC TGTAAGG-GC GAAATCCGCA ATTCTGACCT CAACCCCTTC AC-AACCGGC 718 AAATCCGCTC TT-ATGGACT GAAACAAAGC TGAGTGGCAT ATCTGG 29953 ||||||||| || | ||||| | |||| || |||||||||| |||||| GAATCCGCTC TTGAGGGACT G-AACAGAGT TGAGTGGCAT ATCTGG 763 hqPGS_C04HBa0077O05.1-_SGN-E214046+ (30712 29953) ******************************************************************************** EST sequence 222 +strand 533 n (File: SGN-E353805+) 1 GGATCAACAA TACGGAAGCC ATGCAATCAC AAACTAGAAG ATTACCTGTG ATGACAGCAT 61 CAGATGCCTC CGCTTCAGAC CGCCCAGGGA AAGCGTAACA ATGGGCCCTA TCGTTTGTCT 121 GCCCATTGCC CCTACCATGT TGTGATGTAG TGGCCCCAGT TTGCCCATTA CCTCTGCCGT 181 TTTGGTGACC ACCATTACCT CGACCACCAC GTCCTCCAGA ATAACGGCCT CTACCATGAC 241 CACCTCTACC TCTAGCTATT GGGGGTCTAT AACTTGGTCC AGGACAATTT ATCCTAATAT 301 GTCCAATCTC CCCACATCCA TAACATTCTC TGGAGTCACT CATAGGCCCC TTGGAGAAGT 361 GTTGACCGGT CTGAGGTGGA CCCCCAACTA CAGTCTGTAG TGAAGACTGA ATGGGTCGAG 421 CCGAGTAACC TCCGGAACCT TGTCCTCTAA AGTAAGAACC CTTAAACTCA CCTCCCTTTC 481 GAAACCTCTT TGATGTTGAT GTCGTGGTGA AGTCGTCTGG CTTCACTCCT TCC Predicted gene structure (within gDNA segment 31832 to 28403): Exon 1 30630 30102 ( 529 n); cDNA 1 533 ( 533 n); score: 0.835 MATCH C04HBa0077O05.1- SGN-E353805+ 0.835 529 0.992 C PGS_C04HBa0077O05.1-_SGN-E353805+ (30630 30102) Alignment (genomic DNA sequence = upper lines): GGATCAAACA ATACAGAAGC CATGCAATCA CAAACCAAAA GATTACCTGT GATAACAACA 30571 ||||| |||| |||| ||||| |||||||||| ||||| | || |||||||||| ||| ||| || GGATC-AACA ATACGGAAGC CATGCAATCA CAAACTAGAA GATTACCTGT GATGACAGCA 59 TCAGATGTCT CCGCTTCAGA CCGCCCAGGG AAGGCGTAAC AATGGGCCCT ATCACCTGTT 30511 ||||||| || |||||||||| |||||||||| || ||||||| |||||||||| ||| ||| TCAGATGCCT CCGCTTCAGA CCGCCCAGGG AAAGCGTAAC AATGGGCCCT ATCGTTTGTC 119 TGCCCGTTAC CCCAACCATG CTGCACCGCA G-----CCAG TTTGCCCGCC ACCCCGGTTG 30456 ||||| || | ||| |||||| || | | | |||| ||||||| ||| | | | TGCCCATTGC CCCTACCATG TTGTGATGTA GTGGCCCCAG TTTGCCCATT ACCTCTGCCG 179 GTTTGGTGAC CATCATTACC TCGGCCACCA CGTTCTCCAG GATAACGACC TCTTCTATGA 30396 ||||||||| || ||||||| ||| |||||| ||| |||||| |||||| || ||| | |||| TTTTGGTGAC CACCATTACC TCGACCACCA CGTCCTCCAG AATAACGGCC TCTACCATGA 239 CCACCTCTAC CTCTAACTAT TGGAGGTCTG TAACTCTGTT TTGGACAATA CCTCTTAATG 30336 |||||||||| ||||| |||| ||| ||||| ||||| || ||||||| || |||| CCACCTCTAC CTCTAGCTAT TGGGGGTCTA TAACTTGGTC CAGGACAATT TATCCTAATA 299 TGTCCAGTCT CCCCACATCC ATAACACTCT CTGGATTTAA GCATAGGTCT CTCAGAGAAG 30276 |||||| ||| |||||||||| |||||| ||| ||||| | | |||||| | || |||||| TGTCCAATCT CCCCACATCC ATAACATTCT CTGGAGTCAC TCATAGGCCC CTTGGAGAAG 359 TGTTGACCGG TCTAAGGTGG ACCCCCAACT ACAGTCTGTA GTGAAGACTG AATTGGTCGG 30216 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| ||| ||||| TGTTGACCGG TCTGAGGTGG ACCCCCAACT ACAGTCTGTA GTGAAGACTG AATGGGTCGA 419 ACTGAGTAAC CTCCTGAACC CTGTCCTCTA GAGTAAGAAC CATTAAACTC ACCTCCCCTT 30156 | ||||||| |||| ||||| ||||||||| ||||||||| | |||||||| ||||||| || GCCGAGTAAC CTCCGGAACC TTGTCCTCTA AAGTAAGAAC CCTTAAACTC ACCTCCCTTT 479 CGAAAACTTT TTGATGTCGA TGCCATGGTG AAGTCATCTG GCTTCACTCC TTCC 30102 ||||| || | ||||||| || || | ||||| ||||| |||| |||||||||| |||| CGAAACCTCT TTGATGTTGA TGTCGTGGTG AAGTCGTCTG GCTTCACTCC TTCC 533 hqPGS_C04HBa0077O05.1-_SGN-E353805+ (30630 30102) ******************************************************************************** EST sequence 232 +strand 559 n (File: SGN-E244046+) 1 AAACACGAAT AGGCATATCA AGTAATTCAC AATGTAAAGT TAGACCATTA GCAAATGAGG 61 AAGATACATA AGAAAATGTG GATCCAGGAT CAAACAATAC AGAAGCCATG CAATCACAAA 121 CCAAAAGATT ACCTGTGATG ACAACATCAG ATTCCTCCGC TTCAGACCGC CCAGGGAAAG 181 CGTAACAATG GGCCCTATCA TTCTTATGTC TGTTGCCCCT ACCATGTTGT GATGTAGTGG 241 CTCCAGTTTG CCCATCACCT CGGCCGTTTT GGTGACCACC ATTTCCTCGA CCGCCACGTC 301 CTCCAGAATA ACGGACTCTG CCATGACCAC CTCTACCTCT AACCTTTGGA GGTCTGTAAC 361 TCTGTTTTGG ACAATATCTC TTAATATGTC CAATCTCCCC ACACCCATAG CACTCTCTGG 421 GTTCATGCAT AAGTCTCTCA GAGAAGTGTT GACCGGTCGA AGGTGGACCC CCAACTACAG 481 TCTGTAGTGA AGACTGAATT GGTCGGACTG AGTAACTTCC CGAACCCTGT CCTCTAGTGT 541 AAGCACCATT AAACTCACC Predicted gene structure (within gDNA segment 31685 to 29355): Exon 1 30716 30163 ( 554 n); cDNA 1 559 ( 559 n); score: 0.878 MATCH C04HBa0077O05.1- SGN-E244046+ 0.878 554 0.991 C PGS_C04HBa0077O05.1-_SGN-E244046+ (30716 30163) Alignment (genomic DNA sequence = upper lines): AAACACGAAT AGGCATGTCA AGCAATTCAC AATGTAAATT AAGACCATTA GCAAATGAGG 30657 |||||||||| |||||| ||| || ||||||| |||||||| | ||||||||| |||||||||| AAACACGAAT AGGCATATCA AGTAATTCAC AATGTAAAGT TAGACCATTA GCAAATGAGG 60 AAGATACATA AGAAAATGTG GATCCAGGAT CAAACAATAC AGAAGCCATG CAATCACAAA 30597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATACATA AGAAAATGTG GATCCAGGAT CAAACAATAC AGAAGCCATG CAATCACAAA 120 CCAAAAGATT ACCTGTGATA ACAACATCAG ATGTCTCCGC TTCAGACCGC CCAGGGAAGG 30537 |||||||||| ||||||||| |||||||||| || |||||| |||||||||| |||||||| | CCAAAAGATT ACCTGTGATG ACAACATCAG ATTCCTCCGC TTCAGACCGC CCAGGGAAAG 180 CGTAACAATG GGCCCTATCA CCTGTTTGCC CGTTACCCCA ACCATGCTG- CA--CCGCAG 30480 |||||||||| |||||||||| | || | ||| |||| |||||| || | | | CGTAACAATG GGCCCTATCA TTCTTATGTC TGTTGCCCCT ACCATGTTGT GATGTAGTGG 240 --CCAGTTTG CCCGCCACCC CGGTTGGTTT GGTGACCATC ATTACCTCGG CCACCACGTT 30422 |||||||| ||| |||| ||| | ||| |||||||| | ||| ||||| || |||||| CTCCAGTTTG CCCATCACCT CGGCCGTTTT GGTGACCACC ATTTCCTCGA CCGCCACGTC 300 CTCCAGGATA ACGACCTCTT CTATGACCAC CTCTACCTCT AACTATTGGA GGTCTGTAAC 30362 |||||| ||| ||| |||| | |||||||| |||||||||| ||| ||||| |||||||||| CTCCAGAATA ACGGACTCTG CCATGACCAC CTCTACCTCT AACCTTTGGA GGTCTGTAAC 360 TCTGTTTTGG ACAATACCTC TTAATGTGTC CAGTCTCCCC ACATCCATAA CACTCTCTGG 30302 |||||||||| |||||| ||| ||||| |||| || ||||||| ||| ||||| |||||||||| TCTGTTTTGG ACAATATCTC TTAATATGTC CAATCTCCCC ACACCCATAG CACTCTCTGG 420 ATTTAAGCAT AGGTCTCTCA GAGAAGTGTT GACCGGTCTA AGGTGGACCC CCAACTACAG 30242 || | |||| | |||||||| |||||||||| |||||||| | |||||||||| |||||||||| GTTCATGCAT AAGTCTCTCA GAGAAGTGTT GACCGGTCGA AGGTGGACCC CCAACTACAG 480 TCTGTAGTGA AGACTGAATT GGTCGGACTG AGTAACCTCC TGAACCCTGT CCTCTAGAGT 30182 |||||||||| |||||||||| |||||||||| |||||| ||| ||||||||| ||||||| || TCTGTAGTGA AGACTGAATT GGTCGGACTG AGTAACTTCC CGAACCCTGT CCTCTAGTGT 540 AAGAACCATT AAACTCACC 30163 ||| |||||| ||||||||| AAGCACCATT AAACTCACC 559 hqPGS_C04HBa0077O05.1-_SGN-E244046+ (30716 30163) ******************************************************************************** EST sequence 270 +strand 543 n (File: SGN-E355026+) 1 GAACACATCC AAAAATTCTC AAACTACCAA AACTAATTCA ATTGAGGGTA CTTGGATAGT 61 GTCATCCTTG AGATGTGCCA AGAAGGATAG ACAACCCTTA CTAACCATCT TCTGAGCACA 121 AAGAAAGGAG ATAATACGCA CCGGATTGGA AGTGTAGTCA CCCTCCCACA CTAACGGATC 181 TGTCCCAGGC TTGGCTAACG TCACCGTTTT AGCATTACAA TCCAAGATCG CAAAATTGGG 241 AGAAAGCCAA GTCATACCCA GAATTACATC AAAGTCACCC ATTTCTAAAG TAACCAAATC 301 TAGATAAGTG TTGCTCCCCA CGAAATTCAC CAAACAAGAC CTATGTACCT TTTCAACTAT 361 CACAGACTCA CCCACCGGAG TAGAAACACG AATAGGCATG TCAAGTAATT CACAATGCAA 421 TTTTAGACCA TTAGCAAATG ATGAAGATAC ATATGAAAAC GTGGAGCCAG GGTCAAATAA 481 TACAGATGCC ATGCAATCAC AAACCAAGAG ATTACCTGTG ATAACAGCAT CAGACGCCTC 541 TGC Predicted gene structure (within gDNA segment 33130 to 29794): Exon 1 31099 30557 ( 543 n); cDNA 1 543 ( 543 n); score: 0.895 MATCH C04HBa0077O05.1- SGN-E355026+ 0.895 543 1.000 C PGS_C04HBa0077O05.1-_SGN-E355026+ (31099 30557) Alignment (genomic DNA sequence = upper lines): GAACACATCC AGAAACTCAT GGACTACCGA AACTGACTCA ATTGACGGTA CTTGGGTAGT 31040 |||||||||| | ||| || |||||| | |||| | ||| ||||| |||| ||||| |||| GAACACATCC AAAAATTCTC AAACTACCAA AACTAATTCA ATTGAGGGTA CTTGGATAGT 60 GTCATCCCTG AGGTGTGCCA AGAAAGCTAA ACAACCCTTA CTAACCATTC TCTTAGCACG 30980 ||||||| || || ||||||| |||| | || |||||||||| |||||||| ||| ||||| GTCATCCTTG AGATGTGCCA AGAAGGATAG ACAACCCTTA CTAACCATCT TCTGAGCACA 120 AAGAAAGGAG ATGATACGAA CCGGGTTGGA AGTGTAGTTA CCCTCCCACA CTAACGGATC 30920 |||||||||| || ||||| | |||| ||||| |||||||| | |||||||||| |||||||||| AAGAAAGGAG ATAATACGCA CCGGATTGGA AGTGTAGTCA CCCTCCCACA CTAACGGATC 180 TGTCCCAGGC TTGGCTAACG TCACAGTTTT AGCATTACAA TCCAAGATTG CAAAATTTGG 30860 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||| | ||||||| || TGTCCCAGGC TTGGCTAACG TCACCGTTTT AGCATTACAA TCCAAGATCG CAAAATTGGG 240 AGAAAGCCAA GTCATACCCA GAATTACATC GAAGTCAACC ATTTCTAAGA TAACCAAGTC 30800 |||||||||| |||||||||| |||||||||| |||||| || |||||||| ||||||| || AGAAAGCCAA GTCATACCCA GAATTACATC AAAGTCACCC ATTTCTAAAG TAACCAAATC 300 TACATGAGTA TTGCTCCCCA CAAAAGTCAC CAGACCAGAC CTATATACTT TTTCAACTAT 30740 || || ||| |||||||||| | ||| |||| || || |||| |||| ||| | |||||||||| TAGATAAGTG TTGCTCCCCA CGAAATTCAC CAAACAAGAC CTATGTACCT TTTCAACTAT 360 CACAGACTCA CCCACCGGAG TAGAAACACG AATAGGCATG TCAAGCAATT CACAATGTAA 30680 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| ||||||| || CACAGACTCA CCCACCGGAG TAGAAACACG AATAGGCATG TCAAGTAATT CACAATGCAA 420 ATTAAGACCA TTAGCAAATG AGGAAGATAC ATAAGAAAAT GTGGATCCAG GATCAAACAA 30620 || |||||| |||||||||| | |||||||| ||| ||||| ||||| |||| | ||||| || TTTTAGACCA TTAGCAAATG ATGAAGATAC ATATGAAAAC GTGGAGCCAG GGTCAAATAA 480 TACAGAAGCC ATGCAATCAC AAACCAAAAG ATTACCTGTG ATAACAACAT CAGATGTCTC 30560 |||||| ||| |||||||||| ||||||| || |||||||||| |||||| ||| |||| | ||| TACAGATGCC ATGCAATCAC AAACCAAGAG ATTACCTGTG ATAACAGCAT CAGACGCCTC 540 CGC 30557 || TGC 543 hqPGS_C04HBa0077O05.1-_SGN-E355026+ (31099 30557) ******************************************************************************** EST sequence 266 +strand 761 n (File: SGN-E355244+) 1 CGGAAACTCC CATCCTTCTT CTTCACAAAC AAAATCGGAG CACCCCAAGG AGATGCACTT 61 GGTCTAATGA AACCTTTGCT CAACAACTCT TGAAGTTGGG CCTTTAACTC TCTTAACTCT 121 ACGGGAGCCA TTCTATAAGG GGGTATAGAA ATGGGGCGTG TGCCCGGTTC AAGATCGATA 181 CAGAAGTCAA TATCCCTATC TGGTGGCATA CCAGGAAGAT CTGCAGGGAA CACATCCAAA 241 AACTCACAGA CTATAAAAAC CGACTCAATC GAAGGTACTT GGGTAGTGTC ATCCTTGAGA 301 TGTGCCAAGA AAGCTAAACA CCCTTTACTA ACCATTTTCT TAGCACGAAG AAAGGAGATG 361 ATGCACACCG GATTGGAAGT GTAGTCACCC TCCCACACTA ACGGATCTGT CCCAGGCTTG 421 GCTAATGTCA CCGTTTTAGC ATTACAATCC AAGATCGCAA ATTGCGGAGA AAGCCAAGTC 481 ATACCCAGAA TTACATCAAA ATCAACCATT TCTAAGATAA CCAAATCTAC ATAAGTGTTG 541 CTCCCCACAA AGTTCACCAA ACAAGACCTA TATACCTTTT CAACTACCAC AGACTCACCC 601 ACCGGAGTAG AAACACGAAT AGGCATATCA AGTAATTCAC AATGTAAATT TAGACCGTTA 661 GCAAATGAGG AAGATACANT AGAAAACGTG GATCCCAGGA TCAACAATAC AGAAGCCATG 721 CAATCACAAT CGAAAGATTA CCTGTGATGA CAGCATCTAA T Predicted gene structure (within gDNA segment 32043 to 29209): Exon 1 31323 30565 ( 759 n); cDNA 4 761 ( 758 n); score: 0.907 MATCH C04HBa0077O05.1- SGN-E355244+ 0.907 759 0.997 C PGS_C04HBa0077O05.1-_SGN-E355244+ (31323 30565) Alignment (genomic DNA sequence = upper lines): AAACTTCCAC CCTTCTTCTT CACAAACAAA ACCGGAGCAC CCCAAGGGGA TGCACTTGGT 31264 ||||| ||| |||||||||| |||||||||| | |||||||| ||||||| || |||||||||| AAACTCCCAT CCTTCTTCTT CACAAACAAA ATCGGAGCAC CCCAAGGAGA TGCACTTGGT 63 CTAATGAAGC CTTTGCTCAA CAACTCTTGC AGTTGGGCCT TTAACTCTCT TAACTCCGCG 31204 |||||||| | |||||||||| ||||||||| |||||||||| |||||||||| |||||| || CTAATGAAAC CTTTGCTCAA CAACTCTTGA AGTTGGGCCT TTAACTCTCT TAACTCTACG 123 GGAGCTATTG TATAAGGGGG TATAGAAATG GGGCCAATAC CCGGTTCAAG ATCAATGTAG 31144 ||||| ||| |||||||||| |||||||||| |||| | | |||||||||| ||| || || GGAGCCATTC TATAAGGGGG TATAGAAATG GGGCGTGTGC CCGGTTCAAG ATCGATACAG 183 AAGTCAATAT CCCTATCTGG TGGCATACCA GGAAGATCTG CAGGGAACAC ATCCAGAAAC 31084 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| AAGTCAATAT CCCTATCTGG TGGCATACCA GGAAGATCTG CAGGGAACAC ATCCAAAAAC 243 TCATGGACTA CCGAAACTGA CTCAATTGAC GGTACTTGGG TAGTGTCATC CCTGAGGTGT 31024 ||| ||||| |||| || |||||| || |||||||||| |||||||||| | |||| ||| TCACAGACTA TAAAAACCGA CTCAATCGAA GGTACTTGGG TAGTGTCATC CTTGAGATGT 303 GCCAAGAAAG CTAAACAACC CTTACTAACC ATTCTCTTAG CACGAAGAAA GGAGATGATA 30964 |||||||||| ||||||| || ||||||||| ||| |||||| |||||||||| ||||||||| GCCAAGAAAG CTAAACACCC TTTACTAACC ATTTTCTTAG CACGAAGAAA GGAGATGATG 363 CGAACCGGGT TGGAAGTGTA GTTACCCTCC CACACTAACG GATCTGTCCC AGGCTTGGCT 30904 | ||||| | |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| CACACCGGAT TGGAAGTGTA GTCACCCTCC CACACTAACG GATCTGTCCC AGGCTTGGCT 423 AACGTCACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT TTGGAGAAAG CCAAGTCATA 30844 || ||||| | |||||||||| |||||||||| || ||||| | |||||||| |||||||||| AATGTCACCG TTTTAGCATT ACAATCCAAG ATCGCAAATT GCGGAGAAAG CCAAGTCATA 483 CCCAGAATTA CATCGAAGTC AACCATTTCT AAGATAACCA AGTCTACATG AGTATTGCTC 30784 |||||||||| |||| || || |||||||||| |||||||||| | ||||||| ||| |||||| CCCAGAATTA CATCAAAATC AACCATTTCT AAGATAACCA AATCTACATA AGTGTTGCTC 543 CCCACAAAAG TCACCAGACC AGACCTATAT ACTTTTTCAA CTATCACAGA CTCACCCACC 30724 |||||||| |||||| || |||||||||| || ||||||| ||| |||||| |||||||||| CCCACAAAGT TCACCAAACA AGACCTATAT ACCTTTTCAA CTACCACAGA CTCACCCACC 603 GGAGTAGAAA CACGAATAGG CATGTCAAGC AATTCACAAT GTAAATTAAG ACCATTAGCA 30664 |||||||||| |||||||||| ||| ||||| |||||||||| ||||||| || ||| |||||| GGAGTAGAAA CACGAATAGG CATATCAAGT AATTCACAAT GTAAATTTAG ACCGTTAGCA 663 AATGAGGAAG ATACATAAGA AAATGTGGAT -CCAGGATCA AACAATACAG AAGCCATGCA 30605 |||||||||| ||||| ||| ||| |||||| |||||||| |||||||||| |||||||||| AATGAGGAAG ATACANTAGA AAACGTGGAT CCCAGGATC- AACAATACAG AAGCCATGCA 722 ATCACAAACC AAAAGATTAC CTGTGATAAC AACATCAGAT 30565 ||||| || | ||||||||| ||||||| || | |||| || ATCAC-AATC GAAAGATTAC CTGTGATGAC AGCATCTAAT 761 hqPGS_C04HBa0077O05.1-_SGN-E355244+ (31323 30565) ******************************************************************************** EST sequence 224 +strand 331 n (File: SGN-E352716+) 1 GATCTGTCCC AGGCTTGGCT AACGTCACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 61 TTGGAGAAAG CCAAGTCATA CCCAGAATTA CATCAAAATC AACCATTTCT AAGATAACCA 121 AGTCTACATA AGTATTGCTC CCCACAAAAG TCACCAGACC AGACCTATAT ACTTTTTCAA 181 CTATCACAGA CTCACCCACC GGAGTAGAAA CACGAATAGG CATGTCAAGC AATTCATAAT 241 TTAATTTAAG ACCAGTAGCA AATGAGGAAG ATACATATGA AAATGTGGAT CCAGGGTCAA 301 ATAATACAAA AGCCATGCAA TCACAAAAAA A Predicted gene structure (within gDNA segment 31523 to 29947): Exon 1 30923 30593 ( 331 n); cDNA 1 331 ( 331 n); score: 0.961 MATCH C04HBa0077O05.1- SGN-E352716+ 0.961 331 1.000 C PGS_C04HBa0077O05.1-_SGN-E352716+ (30923 30593) Alignment (genomic DNA sequence = upper lines): GATCTGTCCC AGGCTTGGCT AACGTCACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 30864 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTGTCCC AGGCTTGGCT AACGTCACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 60 TTGGAGAAAG CCAAGTCATA CCCAGAATTA CATCGAAGTC AACCATTTCT AAGATAACCA 30804 |||||||||| |||||||||| |||||||||| |||| || || |||||||||| |||||||||| TTGGAGAAAG CCAAGTCATA CCCAGAATTA CATCAAAATC AACCATTTCT AAGATAACCA 120 AGTCTACATG AGTATTGCTC CCCACAAAAG TCACCAGACC AGACCTATAT ACTTTTTCAA 30744 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCTACATA AGTATTGCTC CCCACAAAAG TCACCAGACC AGACCTATAT ACTTTTTCAA 180 CTATCACAGA CTCACCCACC GGAGTAGAAA CACGAATAGG CATGTCAAGC AATTCACAAT 30684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| CTATCACAGA CTCACCCACC GGAGTAGAAA CACGAATAGG CATGTCAAGC AATTCATAAT 240 GTAAATTAAG ACCATTAGCA AATGAGGAAG ATACATAAGA AAATGTGGAT CCAGGATCAA 30624 ||| ||||| |||| ||||| |||||||||| ||||||| || |||||||||| ||||| |||| TTAATTTAAG ACCAGTAGCA AATGAGGAAG ATACATATGA AAATGTGGAT CCAGGGTCAA 300 ACAATACAGA AGCCATGCAA TCACAAACCA A 30593 | |||||| | |||||||||| ||||||| | | ATAATACAAA AGCCATGCAA TCACAAAAAA A 331 hqPGS_C04HBa0077O05.1-_SGN-E352716+ (30923 30593) ******************************************************************************** EST sequence 84 -strand 659 n (File: SGN-E352117-) 1 CCCAAGGGGA TGCACTTGGC NTAATGAAGC CCTTACNTAA CAACTCTTGA AGTTGGGCCT 61 TTAACTCCCC CAACTCAGCG GGAGCCATTC TATAAGGGGG TATGGAAATG GGGTGATCAC 121 CCGGCTCCAG ATCAATGCAA AAGTCAATAT CCCTATCCGG TGGCATACCA GGAAGGTCTG 181 CAGGAAACAC ATCCAGAAAC TCACGGACTA TCGAAACTGA CTCAATTGAA GGTACTTGGG 241 TAGTATCATC CCTGAGGTGT GCCAAGAAAG CTAAACACCC TTTACTAACC ATTCTCTTAG 301 CACAAAGAAA GGAGATGATA CGAACTGGAG TGGAAGTGTA GTCACCCTCC CACACTAACG 361 CATCTATCTC AGGCTTGGCC AACGTTACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 421 TTGGAGACAG CCAAGTCATA CCCAGAATTA CATCGAAGTC AACCATTTAT AGGATAACCA 481 AGTCTACATG AGTATTGCTC CCACAAATGT CACAAGACAA GACCTATACA CCTTTTCAAC 541 AATCACAGAC TCACCCACCG GAGTAGAACA CGAATAGGTA TGTCAAGCGA TTCACTATGT 601 AAATTAAGAA CAGTAGCAAA TGAGGAAGAT ACATATGAAA ATGTGGAGGC AGGATCAAA Predicted gene structure (within gDNA segment 33153 to 28612): Exon 1 31283 30623 ( 661 n); cDNA 1 659 ( 659 n); score: 0.909 MATCH C04HBa0077O05.1- SGN-E352117- 0.909 661 1.003 C PGS_C04HBa0077O05.1-_SGN-E352117- (31283 30623) Alignment (genomic DNA sequence = upper lines): CCCAAGGGGA TGCACTTGGT CTAATGAAGC CTTTGCTCAA CAACTCTTGC AGTTGGGCCT 31224 |||||||||| ||||||||| ||||||||| | || | || ||||||||| |||||||||| CCCAAGGGGA TGCACTTGGC NTAATGAAGC CCTTACNTAA CAACTCTTGA AGTTGGGCCT 60 TTAACTCTCT TAACTCCGCG GGAGCTATTG TATAAGGGGG TATAGAAATG GGGCCAATAC 31164 ||||||| | ||||| ||| ||||| ||| |||||||||| ||| |||||| ||| | || TTAACTCCCC CAACTCAGCG GGAGCCATTC TATAAGGGGG TATGGAAATG GGGTGATCAC 120 CCGGTTCAAG ATCAATGTAG AAGTCAATAT CCCTATCTGG TGGCATACCA GGAAGATCTG 31104 |||| || || ||||||| | |||||||||| ||||||| || |||||||||| ||||| |||| CCGGCTCCAG ATCAATGCAA AAGTCAATAT CCCTATCCGG TGGCATACCA GGAAGGTCTG 180 CAGGGAACAC ATCCAGAAAC TCATGGACTA CCGAAACTGA CTCAATTGAC GGTACTTGGG 31044 |||| ||||| |||||||||| ||| |||||| ||||||||| ||||||||| |||||||||| CAGGAAACAC ATCCAGAAAC TCACGGACTA TCGAAACTGA CTCAATTGAA GGTACTTGGG 240 TAGTGTCATC CCTGAGGTGT GCCAAGAAAG CTAAACAACC CTTACTAACC ATTCTCTTAG 30984 |||| ||||| |||||||||| |||||||||| ||||||| || ||||||||| |||||||||| TAGTATCATC CCTGAGGTGT GCCAAGAAAG CTAAACACCC TTTACTAACC ATTCTCTTAG 300 CACGAAGAAA GGAGATGATA CGAACCGGGT TGGAAGTGTA GTTACCCTCC CACACTAACG 30924 ||| |||||| |||||||||| ||||| || |||||||||| || ||||||| |||||||||| CACAAAGAAA GGAGATGATA CGAACTGGAG TGGAAGTGTA GTCACCCTCC CACACTAACG 360 GATCTGTCCC AGGCTTGGCT AACGTCACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 30864 |||| || | ||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| CATCTATCTC AGGCTTGGCC AACGTTACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 420 TTGGAGAAAG CCAAGTCATA CCCAGAATTA CATCGAAGTC AACCATTTCT AAGATAACCA 30804 ||||||| || |||||||||| |||||||||| |||||||||| |||||||| | | |||||||| TTGGAGACAG CCAAGTCATA CCCAGAATTA CATCGAAGTC AACCATTTAT AGGATAACCA 480 AGTCTACATG AGTATTGCTC CCCACAAAAG TCACCAGACC AGACCTATAT ACTTTTTCAA 30744 |||||||||| ||||||||| |||||||| | |||| |||| ||||||||| || ||||||| AGTCTACATG AGTATTGCT- CCCACAAATG TCACAAGACA AGACCTATAC ACCTTTTCAA 539 CTATCACAGA CTCACCCACC GGAGTAGAAA CACGAATAGG CATGTCAAGC AATTCACAAT 30684 | |||||||| |||||||||| ||||||| || |||||||||| ||||||||| |||||| || CAATCACAGA CTCACCCACC GGAGTAG-AA CACGAATAGG TATGTCAAGC GATTCACTAT 598 GTAAATTAAG ACCATTAGCA AATGAGGAAG ATACATAAGA AAATGTGGAT CCAGGATCAA 30624 |||||||||| | || ||||| |||||||||| ||||||| || ||||||||| ||||||||| GTAAATTAAG AACAGTAGCA AATGAGGAAG ATACATATGA AAATGTGGAG GCAGGATCAA 658 A 30623 | A 659 hqPGS_C04HBa0077O05.1-_SGN-E352117- (31283 30623) ******************************************************************************** EST sequence 231 +strand 661 n (File: SGN-E351414+) 1 CGGAAACTCC CATCCTTCTT CTTCACAAAC AAAATCGGAG CACCCCAAGG AGATGCACTT 61 GGTCTAATGA AACCTTTGCT CAACAACTCT TGAAGTTGGG CCTTTAACTC TCTTAACTCT 121 ACGGGAGCCA TTCTATAAGG GGGTATAGAA ATGGGGCGTG TGCCCGGTTC AAGATCGATA 181 CAGAAGTCAA TATCCCTATC TGGTGGCATA CCAGGAAGAT CTGCAGGGAA CACATCCAAA 241 AACTCACAGA CTATAAAAAC CGACTCAATC GAAGGTACTT GGGTAGTGTC ATCCTTGAGA 301 TGTGCCAAGA AAGCTAAACA CCCTTTACTA ACCATTTTCT TAGCACGAAG AAAGGAGATG 361 ATGCACACCG GATTGGAAGT GTAGTCACCC TCCCACACTA ACGGATCTGT CCCAGGCTTG 421 GCTAATGTCA CCGTTTTAGC ATTACAATCC AAGATCGCAA ATTGCGGAGA AAGCCAAGTC 481 ATACCCAGAA TTACATCAAA ATCAACCATT TCTAAGATAA CCAAATCTAC ATAAGTGTTG 541 CTCCCCACAA AGTTCACCAA ACAAGACCTA TATACCTTTT CAACTACCAC AGACTCACCC 601 ACCGGAGTAG AAACACGAAT AGGCATATCA AGTAATTCAC AATGTAAATT TAGACCGTTA 661 G Predicted gene structure (within gDNA segment 32043 to 29957): Exon 1 31323 30666 ( 658 n); cDNA 4 661 ( 658 n); score: 0.913 MATCH C04HBa0077O05.1- SGN-E351414+ 0.913 658 0.995 C PGS_C04HBa0077O05.1-_SGN-E351414+ (31323 30666) Alignment (genomic DNA sequence = upper lines): AAACTTCCAC CCTTCTTCTT CACAAACAAA ACCGGAGCAC CCCAAGGGGA TGCACTTGGT 31264 ||||| ||| |||||||||| |||||||||| | |||||||| ||||||| || |||||||||| AAACTCCCAT CCTTCTTCTT CACAAACAAA ATCGGAGCAC CCCAAGGAGA TGCACTTGGT 63 CTAATGAAGC CTTTGCTCAA CAACTCTTGC AGTTGGGCCT TTAACTCTCT TAACTCCGCG 31204 |||||||| | |||||||||| ||||||||| |||||||||| |||||||||| |||||| || CTAATGAAAC CTTTGCTCAA CAACTCTTGA AGTTGGGCCT TTAACTCTCT TAACTCTACG 123 GGAGCTATTG TATAAGGGGG TATAGAAATG GGGCCAATAC CCGGTTCAAG ATCAATGTAG 31144 ||||| ||| |||||||||| |||||||||| |||| | | |||||||||| ||| || || GGAGCCATTC TATAAGGGGG TATAGAAATG GGGCGTGTGC CCGGTTCAAG ATCGATACAG 183 AAGTCAATAT CCCTATCTGG TGGCATACCA GGAAGATCTG CAGGGAACAC ATCCAGAAAC 31084 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| AAGTCAATAT CCCTATCTGG TGGCATACCA GGAAGATCTG CAGGGAACAC ATCCAAAAAC 243 TCATGGACTA CCGAAACTGA CTCAATTGAC GGTACTTGGG TAGTGTCATC CCTGAGGTGT 31024 ||| ||||| |||| || |||||| || |||||||||| |||||||||| | |||| ||| TCACAGACTA TAAAAACCGA CTCAATCGAA GGTACTTGGG TAGTGTCATC CTTGAGATGT 303 GCCAAGAAAG CTAAACAACC CTTACTAACC ATTCTCTTAG CACGAAGAAA GGAGATGATA 30964 |||||||||| ||||||| || ||||||||| ||| |||||| |||||||||| ||||||||| GCCAAGAAAG CTAAACACCC TTTACTAACC ATTTTCTTAG CACGAAGAAA GGAGATGATG 363 CGAACCGGGT TGGAAGTGTA GTTACCCTCC CACACTAACG GATCTGTCCC AGGCTTGGCT 30904 | ||||| | |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| CACACCGGAT TGGAAGTGTA GTCACCCTCC CACACTAACG GATCTGTCCC AGGCTTGGCT 423 AACGTCACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT TTGGAGAAAG CCAAGTCATA 30844 || ||||| | |||||||||| |||||||||| || ||||| | |||||||| |||||||||| AATGTCACCG TTTTAGCATT ACAATCCAAG ATCGCAAATT GCGGAGAAAG CCAAGTCATA 483 CCCAGAATTA CATCGAAGTC AACCATTTCT AAGATAACCA AGTCTACATG AGTATTGCTC 30784 |||||||||| |||| || || |||||||||| |||||||||| | ||||||| ||| |||||| CCCAGAATTA CATCAAAATC AACCATTTCT AAGATAACCA AATCTACATA AGTGTTGCTC 543 CCCACAAAAG TCACCAGACC AGACCTATAT ACTTTTTCAA CTATCACAGA CTCACCCACC 30724 |||||||| |||||| || |||||||||| || ||||||| ||| |||||| |||||||||| CCCACAAAGT TCACCAAACA AGACCTATAT ACCTTTTCAA CTACCACAGA CTCACCCACC 603 GGAGTAGAAA CACGAATAGG CATGTCAAGC AATTCACAAT GTAAATTAAG ACCATTAG 30666 |||||||||| |||||||||| ||| ||||| |||||||||| ||||||| || ||| |||| GGAGTAGAAA CACGAATAGG CATATCAAGT AATTCACAAT GTAAATTTAG ACCGTTAG 661 hqPGS_C04HBa0077O05.1-_SGN-E351414+ (31323 30666) ******************************************************************************** EST sequence 183 +strand 560 n (File: SGN-E242765+) 1 TGGTTCTAGC ATTAGGACAT CATAGCTCAT TTGATTATTT CTCATCTCAT AATTAGTATT 61 TAGTATTCCC TCAATTTAAT AATTTCATTA AAGTGTTCAT AGAGACTTAT CTCTTCATTA 121 GCTTTACACT ATAAAAGGTG AGTAAGTGTT GGTAATATTT ACTTAGGCTT ATTTGCTATT 181 GAAACCGACT CAATCGAAGG TACTTGGGTA GTGTCATCAT TGAGATGTGC TAAGAAAGAT 241 AAACACCTTT TACTAATCAT TTTCTTAGCA AGAAGAAAGG AGACGATGCG GACCGGATTG 301 GAAGTGTAGT CACCCTCTCA CACTAACGGG TCTATCCCAG GCTTGGCTAA CGTCACCGTT 361 TTAGCATTAC AATCCAAGAT TGCAAATTGC GGAGAAAGCA AAGTCATACC CAGAATCACA 421 TCAAAATCAT CCATTGCCAA GATAACCAAA TCTACATAAG TGTTGCTCCC CACAAAGTTT 481 ACGACACAAG ACCTATATAC TTTTTCAACT ACCTCAGACT CACCCACCGG AGTAGAAACA 541 CGAATAGGCA TATCAAGAAA Predicted gene structure (within gDNA segment 34857 to 30001): Exon 1 33313 33308 ( 6 n); cDNA 162 167 ( 6 n); score: 0.833 Intron 1 33307 31085 (2223 n); Pd: 0.979 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 31084 30692 ( 393 n); cDNA 168 560 ( 393 n); score: 0.868 MATCH C04HBa0077O05.1- SGN-E242765+ 0.868 399 0.712 C PGS_C04HBa0077O05.1-_SGN-E242765+ (33313 33308,31084 30692) Alignment (genomic DNA sequence = upper lines): CTAAGGGTAA GAAGCTATCC CAATAACTAC CAAATTCTAT CACACATGCA CGAAGCATAT 33254 || ||| CTTAGG.... .......... .......... .......... .......... .......... 167 CCTCCAACAC TTGAATCGTT CGCTCAGGCT GACCATCGGT CTGAGGATGG AACGCAGTAC 33194 .......... .......... .......... .......... .......... .......... 167 TAAGGTCCAA CCTAGTACCC AATTCCGCAT GCAATATTTT CCAAAACTTA GAAGTAAACA 33134 .......... .......... .......... .......... .......... .......... 167 TCGTTCCTCT ATCTGATATG ATGGAGAGTG GAACCCCATG CAATCGAACA ATTTCTGAGA 33074 .......... .......... .......... .......... .......... .......... 167 TGTAAATTTT GGCTAACTTC TCTGCATTAT AAGTCACCTT GACCGGAATG AAATGAACAG 33014 .......... .......... .......... .......... .......... .......... 167 ACTTAGTTAA TCTGTCCACA ATTACCCAAA TAGAGTCAAA CTTCCCCAAT GTCTTTGGAA 32954 .......... .......... .......... .......... .......... .......... 167 GACCAACCAC GAAGTCCATT GCAATTCTCT CCCACTTTCA TTCAGGAATG GGCATTCTCT 32894 .......... .......... .......... .......... .......... .......... 167 GAAGTGTTCC TCCGGGCCTC TAGTGTACTT TACTTGCTGA CAATTTGGAC ATTTGGCAAC 32834 .......... .......... .......... .......... .......... .......... 167 AAAATCCACA ATGTCGCGCT TCATCCTACT CCACCAAAAG TGTTGCTTTA GGTCACGATA 32774 .......... .......... .......... .......... .......... .......... 167 CATCTTGGTT GCACCAGGAT GTATAGAATA CCTTGAACTA TGAGCCTCTG TCAGAATAGT 32714 .......... .......... .......... .......... .......... .......... 167 GTTGATCAGA TCATCGAAGC GGGGTACACA TACCATTCCC TTGATTCTCA AAACACCTTT 32654 .......... .......... .......... .......... .......... .......... 167 CTCATCGATT TGTGCTTCCT TAGCCTCTCC TCGCAATACT TTATCTTGGA TTCTGCTTAG 32594 .......... .......... .......... .......... .......... .......... 167 TTTCTCATCC TCAAACTGTT TTTCCTTAAT CTTGTCAAGA AAAGAAGATC TTGCCTCCAC 32534 .......... .......... .......... .......... .......... .......... 167 ACAAGCCAAC AATCCTCCCT TCTCATTTAC TTCTAACCTC ATCAAGTCGT TAGCCAGGGT 32474 .......... .......... .......... .......... .......... .......... 167 CTGAACCTCT CTAGCCAATG GACGTCTAGA AACTTGCAAG TGAGCTAGAC TTCCCATGCT 32414 .......... .......... .......... .......... .......... .......... 167 CCCTGCCTTT CTACTTAAGG CGTCTGCCAC AACATTAGCC TTTCCCGGAT GATACAAGAT 32354 .......... .......... .......... .......... .......... .......... 167 AGTGATGTCG TAGTCCTTCA GTAGTTCCAT CCATCTCCTC TGTCTCAAGT TCAAATCTTT 32294 .......... .......... .......... .......... .......... .......... 167 CTGAGTAAAG ACGTACTGTA GGCTACGATG ATCCGTGTAG ACCTCACACT TAGCTCCATA 32234 .......... .......... .......... .......... .......... .......... 167 TAGATAATGT CTCCATTGCT TTAATGCAAA CACTACCGCA GCCAACTCCA AATCATGGGT 32174 .......... .......... .......... .......... .......... .......... 167 CGGATAATTA CGTTCGTGCA CCTTTAATTG CCTCGAAGCA TAAGCAATTA CATTCTTCTC 32114 .......... .......... .......... .......... .......... .......... 167 TTGCATTAGT ACTGCACCCA AACCCGAATA GGATGCATCA CAATAGACAA CTAAATTCTT 32054 .......... .......... .......... .......... .......... .......... 167 ACCTTCCACT GGCAAGGTAA GGATTGGTGC GGTAGTCAAC AAGGTCTTGA GCTTCTGAAA 31994 .......... .......... .......... .......... .......... .......... 167 GCTTTCTTCA CATTCATCCG ACCATACAAA TGGAACATTC TGCTTAGTCA AGTTCGTCAA 31934 .......... .......... .......... .......... .......... .......... 167 TTGCGAAGCG ATGGAAGAGA ATCCCTTGAC AAATCGACGG TAATAGCTAG CTAAACCAAC 31874 .......... .......... .......... .......... .......... .......... 167 AAAGCTCCTT ATTTCTGACA CATTAGTAGG TCTTAACCAA TTCTTCACTG TCTCAATCTT 31814 .......... .......... .......... .......... .......... .......... 167 ATAAGGATCC ACCATCACGC CCTCCTTAGA CACCACGTGC CCCAAGAAGG ACACTGAATC 31754 .......... .......... .......... .......... .......... .......... 167 AAGCCAAAAT TCACACTTGG ATAATTTGGC ATAGAGCTTC TTCTCCCTTA ACATTTTCAG 31694 .......... .......... .......... .......... .......... .......... 167 TACCATTCTC AAGTGTTCCT CATGTTCCTT CTTGCTCTTT GAGTATACCA ATATATCATC 31634 .......... .......... .......... .......... .......... .......... 167 AATAAATACG ATCACAAAGA GATCCAGATA TGGCTTAAAA ATCCTATTCA TCAAGCTCAT 31574 .......... .......... .......... .......... .......... .......... 167 GAAAGCAGCA GGGGCATTCG TAAGCCTAAA AGACATTACT AAGAACTCAT AATGCCTATA 31514 .......... .......... .......... .......... .......... .......... 167 CCTGGTCCGA AAAGCAGTCT TGGGCACATC TGCTGCCCGT ATTTTCAATT GATGATAACC 31454 .......... .......... .......... .......... .......... .......... 167 AGATCTCAAG TCGATTTTTG AGAAGGTACA AGCACCTTGT AACTGATCGA ACAAATCATC 31394 .......... .......... .......... .......... .......... .......... 167 AATGCGAGGA AGAGGATACT TGTTCTTAAT CGTTACCTTA TTTAGTTGTC TGTAATCTAT 31334 .......... .......... .......... .......... .......... .......... 167 GCACATCCTA AAACTTCCAC CCTTCTTCTT CACAAACAAA ACCGGAGCAC CCCAAGGGGA 31274 .......... .......... .......... .......... .......... .......... 167 TGCACTTGGT CTAATGAAGC CTTTGCTCAA CAACTCTTGC AGTTGGGCCT TTAACTCTCT 31214 .......... .......... .......... .......... .......... .......... 167 TAACTCCGCG GGAGCTATTG TATAAGGGGG TATAGAAATG GGGCCAATAC CCGGTTCAAG 31154 .......... .......... .......... .......... .......... .......... 167 ATCAATGTAG AAGTCAATAT CCCTATCTGG TGGCATACCA GGAAGATCTG CAGGGAACAC 31094 .......... .......... .......... .......... .......... .......... 167 ATCCAGAAAC TCATGGACTA CCGAAACTGA CTCAATTGAC GGTACTTGGG TAGTGTCATC 31034 | | || ||| ||||| || |||||| || |||||||||| |||||||||| .........C TTATTTGCTA TTGAAACCGA CTCAATCGAA GGTACTTGGG TAGTGTCATC 218 CCTGAGGTGT GCCAAGAAAG CTAAACAACC CTTACTAACC ATTCTCTTAG CACGAAGAAA 30974 |||| ||| || ||||||| |||||| | ||||||| | ||| |||||| || ||||||| ATTGAGATGT GCTAAGAAAG ATAAACACCT TTTACTAATC ATTTTCTTAG CAAGAAGAAA 278 GGAGATGATA CGAACCGGGT TGGAAGTGTA GTTACCCTCC CACACTAACG GATCTGTCCC 30914 ||||| ||| || ||||| | |||||||||| || |||||| |||||||||| | ||| |||| GGAGACGATG CGGACCGGAT TGGAAGTGTA GTCACCCTCT CACACTAACG GGTCTATCCC 338 AGGCTTGGCT AACGTCACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT TTGGAGAAAG 30854 |||||||||| |||||||| | |||||||||| |||||||||| |||||||| | |||||||| AGGCTTGGCT AACGTCACCG TTTTAGCATT ACAATCCAAG ATTGCAAATT GCGGAGAAAG 398 CCAAGTCATA CCCAGAATTA CATCGAAGTC AACCATTTCT AAGATAACCA AGTCTACATG 30794 | |||||||| |||||||| | |||| || || | ||||| | |||||||||| | ||||||| CAAAGTCATA CCCAGAATCA CATCAAAATC ATCCATTGCC AAGATAACCA AATCTACATA 458 AGTATTGCTC CCCACAAAAG TCACCAGACC AGACCTATAT ACTTTTTCAA CTATCACAGA 30734 ||| |||||| |||||||| | || | || |||||||||| |||||||||| ||| | |||| AGTGTTGCTC CCCACAAAGT TTACGACACA AGACCTATAT ACTTTTTCAA CTACCTCAGA 518 CTCACCCACC GGAGTAGAAA CACGAATAGG CATGTCAAGC AA 30692 |||||||||| |||||||||| |||||||||| ||| ||||| || CTCACCCACC GGAGTAGAAA CACGAATAGG CATATCAAGA AA 560 hqPGS_C04HBa0077O05.1-_SGN-E242765+ (31084 30692) ******************************************************************************** EST sequence 265 +strand 658 n (File: SGN-E355232+) 1 TCAATGCGAG GAAGAGGATA CTTGTTCTTA ATAGTTACCT TGTTCAGTTG TCTGTAGTCT 61 ATGCACATTC TAAAACTTCC ATCCTTCTTC TTCACAAATA AAACTGGAGC ACCCCAAGGA 121 GATGCACTTG GTCTAATGAA GACCTTGCTC AACAACTCTT GAAGTTGAGC CTTTAACTCT 181 CTTAATTCGG CGGGAGCCAT TCTATAAGGG GGTATAGAAA TGGGGCGTGT GCCTGGTTCA 241 AGATCGATAC AGAAGTCAAT ATCCCTATCT GGTGGCATAC CAGGAAGATC TGCAGGAAAC 301 ACGTCCAAAA ACTCGCGGAC TACCGAAACC GACTCAATTG AGGGTACTTG AGTAGTGTCA 361 TCCTTGAGAT GTGCCAAGAA AGCTGAACAC CCTTTACTAA CCATTTTCTT AGCACGAAGA 421 AAGGATATGA TACGCACCAG ATTGGAAGTG TAGTCACCCT CCCACACTAA CGGATCTGTC 481 CCAGGCTTGG CTAACGTCAC CGTTTTAGCA TTACAATCCA AGATCGCAAA ATTTGGAGAA 541 AGCCAAGTCA TACCCAGAAT TACATCAATG TCACCCATTT CTAAAAAACC AAATCTACAT 601 AAGTGTTGCT CCCCACGAAA TTCNACAAAA CAGAACTATG TACCTTTTCA ACTACCAC Predicted gene structure (within gDNA segment 31995 to 29300): Exon 1 31395 30737 ( 659 n); cDNA 1 658 ( 658 n); score: 0.903 MATCH C04HBa0077O05.1- SGN-E355232+ 0.903 659 1.002 C PGS_C04HBa0077O05.1-_SGN-E355232+ (31395 30737) Alignment (genomic DNA sequence = upper lines): TCAATGCGAG GAAGAGGATA CTTGTTCTTA ATCGTTACCT TATTTAGTTG TCTGTAATCT 31336 |||||||||| |||||||||| |||||||||| || ||||||| | || ||||| |||||| ||| TCAATGCGAG GAAGAGGATA CTTGTTCTTA ATAGTTACCT TGTTCAGTTG TCTGTAGTCT 60 ATGCACATCC TAAAACTTCC ACCCTTCTTC TTCACAAACA AAACCGGAGC ACCCCAAGGG 31276 |||||||| | |||||||||| | |||||||| |||||||| | |||| ||||| ||||||||| ATGCACATTC TAAAACTTCC ATCCTTCTTC TTCACAAATA AAACTGGAGC ACCCCAAGGA 120 GATGCACTTG GTCTAATGAA GCCTTTGCTC AACAACTCTT GCAGTTGGGC CTTTAACTCT 31216 |||||||||| |||||||||| | | |||||| |||||||||| | ||||| || |||||||||| GATGCACTTG GTCTAATGAA GACCTTGCTC AACAACTCTT GAAGTTGAGC CTTTAACTCT 180 CTTAACTCCG CGGGAGCTAT TGTATAAGGG GGTATAGAAA TGGGGCCAAT ACCCGGTTCA 31156 ||||| || | ||||||| || | |||||||| |||||||||| |||||| | || |||||| CTTAATTCGG CGGGAGCCAT TCTATAAGGG GGTATAGAAA TGGGGCGTGT GCCTGGTTCA 240 AGATCAATGT AGAAGTCAAT ATCCCTATCT GGTGGCATAC CAGGAAGATC TGCAGGGAAC 31096 ||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| AGATCGATAC AGAAGTCAAT ATCCCTATCT GGTGGCATAC CAGGAAGATC TGCAGGAAAC 300 ACATCCAGAA ACTCATGGAC TACCGAAACT GACTCAATTG ACGGTACTTG GGTAGTGTCA 31036 || |||| || |||| |||| ||||||||| |||||||||| | |||||||| ||||||||| ACGTCCAAAA ACTCGCGGAC TACCGAAACC GACTCAATTG AGGGTACTTG AGTAGTGTCA 360 TCCCTGAGGT GTGCCAAGAA AGCTAAACAA CCCTTACTAA CCATTCTCTT AGCACGAAGA 30976 ||| |||| | |||||||||| |||| |||| || ||||||| ||||| |||| |||||||||| TCCTTGAGAT GTGCCAAGAA AGCTGAACAC CCTTTACTAA CCATTTTCTT AGCACGAAGA 420 AAGGAGATGA TACGAACCGG GTTGGAAGTG TAGTTACCCT CCCACACTAA CGGATCTGTC 30916 ||||| |||| |||| ||| | ||||||||| |||| ||||| |||||||||| |||||||||| AAGGATATGA TACGCACCAG ATTGGAAGTG TAGTCACCCT CCCACACTAA CGGATCTGTC 480 CCAGGCTTGG CTAACGTCAC AGTTTTAGCA TTACAATCCA AGATTGCAAA ATTTGGAGAA 30856 |||||||||| |||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| CCAGGCTTGG CTAACGTCAC CGTTTTAGCA TTACAATCCA AGATCGCAAA ATTTGGAGAA 540 AGCCAAGTCA TACCCAGAAT TACATCGAAG TCAACCATTT CTAAGATAAC CAAGTCTACA 30796 |||||||||| |||||||||| |||||| | | ||| |||||| |||| | ||| ||| |||||| AGCCAAGTCA TACCCAGAAT TACATCAATG TCACCCATTT CTAA-AAAAC CAAATCTACA 599 TGAGTATTGC TCCCCACAAA AGTCACCAGA CCAGACCTAT ATACTTTTTC AACTATCAC 30737 | ||| |||| ||||||| || | || || | |||| |||| ||| ||||| ||||| ||| TAAGTGTTGC TCCCCACGAA ATTCNACAAA ACAGAACTAT GTACCTTTTC AACTACCAC 658 hqPGS_C04HBa0077O05.1-_SGN-E355232+ (31395 30737) ******************************************************************************** EST sequence 276 +strand 679 n (File: SGN-E368762+) 1 GTCTCACCCA ATTCTTCACT GTCTCAATCT TACAAGGATC CACCATCACT CCATCCTTAG 61 AAACCACGTG CCCCAAGAAG GACACTGCAT CTATCCAAAA CTCACACTTA GAGAACTTGG 121 CATAAAGCTT TTTCTCCCTC AACATTTCTA ATACAATTCT CAAATGCTCC TCATGTTCCT 181 TCTTACTATT AGAGTATATC AGTATATCAT CAATAAACAT GATGACAAAG AGATCCAAAT 241 ATGGCTTAAA ATCCCGTTCA TCAAGCTCAT GAACGCAGCA GGGGCATTCG TAAGACCAAA 301 AGACATCACT ACAAATTCGT AATGCCCATA CCTGGTTCTA AAAGCAGTCT TTGGCACATC 361 CGTTGCCCGT ATTTTCAATT GATGATAACC GGATCTCAAG TCAATCTTAG AGAAGACACA 421 AGCACCTTGT AACTGATCGA ACAAGTCATC AATGCGAGGA AGTGGATACT TGTTCTTAAT 481 AGTTACCTTG TTCAACTGCC GGTAGTCTAT GCACATCCGA AAACTCCCAT CCTTCTTCTT 541 CACAAACCAA ACCGGAGCAC CCCAAGGAGA TGCACTTGGT CTAATGAAGA CTTTGCTCAA 601 AAACTCTTGA AGTTGGGCCT TTAACTCTCT TAACTCCGCG GGAGCCATTC TATAAGGGGG 661 TATAGAAATG GGGCGAGTG Predicted gene structure (within gDNA segment 32507 to 30510): Exon 1 31844 31170 ( 675 n); cDNA 1 674 ( 674 n); score: 0.890 MATCH C04HBa0077O05.1- SGN-E368762+ 0.890 675 0.994 C PGS_C04HBa0077O05.1-_SGN-E368762+ (31844 31170) Alignment (genomic DNA sequence = upper lines): GTCTTAACCA ATTCTTCACT GTCTCAATCT TATAAGGATC CACCATCACG CCCTCCTTAG 31785 |||| | ||| |||||||||| |||||||||| || ||||||| ||||||||| || ||||||| GTCTCACCCA ATTCTTCACT GTCTCAATCT TACAAGGATC CACCATCACT CCATCCTTAG 60 ACACCACGTG CCCCAAGAAG GACACTGAAT CAAGCCAAAA TTCACACTTG GATAATTTGG 31725 | |||||||| |||||||||| ||||||| || | | |||||| |||||||| || || |||| AAACCACGTG CCCCAAGAAG GACACTGCAT CTATCCAAAA CTCACACTTA GAGAACTTGG 120 CATAGAGCTT CTTCTCCCTT AACATTTTCA GTACCATTCT CAAGTGTTCC TCATGTTCCT 31665 |||| ||||| |||||||| ||||||| | ||| ||||| ||| || ||| |||||||||| CATAAAGCTT TTTCTCCCTC AACATTTCTA ATACAATTCT CAAATGCTCC TCATGTTCCT 180 TCTTGCTCTT TGAGTATACC AATATATCAT CAATAAATAC GATCACAAAG AGATCCAGAT 31605 |||| || || ||||||| | | |||||||| ||||||| | ||| |||||| ||||||| || TCTTACTATT AGAGTATATC AGTATATCAT CAATAAACAT GATGACAAAG AGATCCAAAT 240 ATGGCTTAAA AATCCTATTC ATCAAGCTCA TGAAAGCAGC AGGGGCATTC GTAAGCCTAA 31545 ||||||| || ||||| ||| |||||||||| |||| ||||| |||||||||| ||||| | || ATGGCTT-AA AATCCCGTTC ATCAAGCTCA TGAACGCAGC AGGGGCATTC GTAAGACCAA 299 AAGACATTAC TAAGAACTCA TAATGCCTAT ACCTGGTCCG AAAAGCAGTC TTGGGCACAT 31485 ||||||| || || || || ||||||| || ||||||| | |||||||||| || ||||||| AAGACATCAC TACAAATTCG TAATGCCCAT ACCTGGTTCT AAAAGCAGTC TTTGGCACAT 359 CTGCTGCCCG TATTTTCAAT TGATGATAAC CAGATCTCAA GTCGATTTTT GAGAAGGTAC 31425 | | |||||| |||||||||| |||||||||| | |||||||| ||| || || |||||| || CCGTTGCCCG TATTTTCAAT TGATGATAAC CGGATCTCAA GTCAATCTTA GAGAAGACAC 419 AAGCACCTTG TAACTGATCG AACAAATCAT CAATGCGAGG AAGAGGATAC TTGTTCTTAA 31365 |||||||||| |||||||||| ||||| |||| |||||||||| ||| |||||| |||||||||| AAGCACCTTG TAACTGATCG AACAAGTCAT CAATGCGAGG AAGTGGATAC TTGTTCTTAA 479 TCGTTACCTT ATTTAGTTGT CTGTAATCTA TGCACATCCT AAAACTTCCA CCCTTCTTCT 31305 | |||||||| || | || | ||| |||| ||||||||| |||||| ||| ||||||||| TAGTTACCTT GTTCAACTGC CGGTAGTCTA TGCACATCCG AAAACTCCCA TCCTTCTTCT 539 TCACAAACAA AACCGGAGCA CCCCAAGGGG ATGCACTTGG TCTAATGAAG CCTTTGCTCA 31245 |||||||| | |||||||||| |||||||| | |||||||||| |||||||||| ||||||||| TCACAAACCA AACCGGAGCA CCCCAAGGAG ATGCACTTGG TCTAATGAAG ACTTTGCTCA 599 ACAACTCTTG CAGTTGGGCC TTTAACTCTC TTAACTCCGC GGGAGCTATT GTATAAGGGG 31185 | |||||||| ||||||||| |||||||||| |||||||||| |||||| ||| ||||||||| AAAACTCTTG AAGTTGGGCC TTTAACTCTC TTAACTCCGC GGGAGCCATT CTATAAGGGG 659 GTATAGAAAT GGGGC 31170 |||||||||| ||||| GTATAGAAAT GGGGC 674 hqPGS_C04HBa0077O05.1-_SGN-E368762+ (31844 31170) ******************************************************************************** EST sequence 184 +strand 712 n (File: SGN-E379315+) 1 GAATCCCTTG ACAAATCGGC GGTAGTAGCT AGCTAACCCA ACAAAGCTCC TTATTTCTGA 61 CACATTAGTA GGTCTTACCC AATTCTTCAC TGTCTCAATC TTAGAAGGAT CCACCATCAC 121 TCCATCCTTA GAAACCACGT TCCCCAAGAA GGACACTACA TCTAGCCAAA ACTCACACTT 181 AGAGAACTTG GCATAAAACT TTTTCTCCCT CAACATTTCC AATACCATTC TCAAATGCTC 241 TTCATGTTCC TCCTTACTTT TAGAGTATAT CAGTATATCA TCAATAAATA CGATCACAAA 301 GAGATCCAAA TATGGCTTAA AAATCCCTTT TATTAAACTC ATAAACGCAG CAGGGGCATT 361 CATAAGACCA AAAGACATCA CTACAAATTT GTAATGCCCA TACCTGGTTC TAAAAGCAGT 421 CTTTGGCACA TCCGTTGCCC GTATTTTCAA TTGATGATAA CCGGATCTCA AGTCAATCTT 481 AGAAAAGACA CAAGCACCTT GTAACTGATC GAACAAGTCA TTAATGCGAG GAAGAGGATA 541 CTTGTTCTTT ATGGTTACCT TGTTNCACTG CCGGTAGCCT ATGCACATCC GAAAACTCCA 601 ATCCTTCTTC TTTACAAACA AAACCGGAGC ACCCCAAGGA GATGCAGTTG GTCTAATGAA 661 GCCTTTGCTC ACAACTCTTT GAAGTGGTCT TTTAACTCTC TTAACTCTGC GG Predicted gene structure (within gDNA segment 32848 to 30225): Exon 1 31915 31203 ( 713 n); cDNA 1 712 ( 712 n); score: 0.875 MATCH C04HBa0077O05.1- SGN-E379315+ 0.875 713 1.001 C PGS_C04HBa0077O05.1-_SGN-E379315+ (31915 31203) Alignment (genomic DNA sequence = upper lines): GAATCCCTTG ACAAATCGAC GGTAATAGCT AGCTAAACCA ACAAAGCTCC TTATTTCTGA 31856 |||||||||| |||||||| | |||| ||||| |||||| ||| |||||||||| |||||||||| GAATCCCTTG ACAAATCGGC GGTAGTAGCT AGCTAACCCA ACAAAGCTCC TTATTTCTGA 60 CACATTAGTA GGTCTTAACC AATTCTTCAC TGTCTCAATC TTATAAGGAT CCACCATCAC 31796 |||||||||| ||||||| || |||||||||| |||||||||| ||| |||||| |||||||||| CACATTAGTA GGTCTTACCC AATTCTTCAC TGTCTCAATC TTAGAAGGAT CCACCATCAC 120 GCCCTCCTTA GACACCACGT GCCCCAAGAA GGACACTGAA TCAAGCCAAA ATTCACACTT 31736 || |||||| || ||||||| ||||||||| ||||||| | || ||||||| | |||||||| TCCATCCTTA GAAACCACGT TCCCCAAGAA GGACACTACA TCTAGCCAAA ACTCACACTT 180 GGATAATTTG GCATAGAGCT TCTTCTCCCT TAACATTTTC AGTACCATTC TCAAGTGTTC 31676 || || ||| ||||| | || | |||||||| ||||||| | | |||||||| |||| || || AGAGAACTTG GCATAAAACT TTTTCTCCCT CAACATTTCC AATACCATTC TCAAATGCTC 240 CTCATGTTCC TTCTTGCTCT TTGAGTATAC CAATATATCA TCAATAAATA CGATCACAAA 31616 ||||||||| | ||| || | | ||||||| || ||||||| |||||||||| |||||||||| TTCATGTTCC TCCTTACTTT TAGAGTATAT CAGTATATCA TCAATAAATA CGATCACAAA 300 GAGATCCAGA TATGGCTTAA AAATCCTATT CATCAAGCTC ATGAAAGCAG CAGGGGCATT 31556 |||||||| | |||||||||| |||||| || || || ||| || || |||| |||||||||| GAGATCCAAA TATGGCTTAA AAATCCCTTT TATTAAACTC ATAAACGCAG CAGGGGCATT 360 CGTAAGCCTA AAAGACATTA CTAAGAACTC ATAATGCCTA TACCTGGTCC GAAAAGCAGT 31496 | |||| | | |||||||| | ||| || | ||||||| | |||||||| | ||||||||| CATAAGACCA AAAGACATCA CTACAAATTT GTAATGCCCA TACCTGGTTC TAAAAGCAGT 420 CTTGGGCACA TCTGCTGCCC GTATTTTCAA TTGATGATAA CCAGATCTCA AGTCGATTTT 31436 ||| |||||| || | ||||| |||||||||| |||||||||| || ||||||| |||| || || CTTTGGCACA TCCGTTGCCC GTATTTTCAA TTGATGATAA CCGGATCTCA AGTCAATCTT 480 TGAGAAGGTA CAAGCACCTT GTAACTGATC GAACAAATCA TCAATGCGAG GAAGAGGATA 31376 || ||| | |||||||||| |||||||||| |||||| ||| | |||||||| |||||||||| AGAAAAGACA CAAGCACCTT GTAACTGATC GAACAAGTCA TTAATGCGAG GAAGAGGATA 540 CTTGTTCTTA ATCGTTACCT TATTTAGTTG TCTGTAATCT ATGCACATCC TAAAACTTCC 31316 ||||||||| || ||||||| | || || | ||| || |||||||||| |||||| | CTTGTTCTTT ATGGTTACCT TGTTNCACTG CCGGTAGCCT ATGCACATCC GAAAACTCCA 600 ACCCTTCTTC TTCACAAACA AAACCGGAGC ACCCCAAGGG GATGCACTTG GTCTAATGAA 31256 | |||||||| || ||||||| |||||||||| ||||||||| |||||| ||| |||||||||| ATCCTTCTTC TTTACAAACA AAACCGGAGC ACCCCAAGGA GATGCAGTTG GTCTAATGAA 660 GCCTTTGCTC AACAACTCTT GCAGTTGGGC CTTTAACTCT CTTAACTCCG CGG 31203 |||||||||| ||||||||| | ||| | ||||||||| |||||||| | ||| GCCTTTGCTC -ACAACTCTT TGAAGTGGTC TTTTAACTCT CTTAACTCTG CGG 712 hqPGS_C04HBa0077O05.1-_SGN-E379315+ (31915 31203) ******************************************************************************** EST sequence 221 +strand 596 n (File: SGN-E375319+) 1 GAATCCCTTG ACAAATCGGC GGTAGTAGCT AGCTAACCCA ACAAAGCTCC TTATTTCTGA 61 CACATTAGTA GGTCTTACCC AATTCTTCAC TGTCTCAATC TTAGAAGGAT CCACCATCAC 121 TCCATCCTTA GAAACCACGT TCCCCAAGAA GGACACTACA TCTAGCCAAA ACTCACACTT 181 AGAGAACTTG GCATAAAACT TTTTCTCCCT CAACATTTCC AATACCATTC TCAAATGCTC 241 TTCATGTTCC TCCTTACTTT TAGAGTATAT CAGTATATCA TCAATAAATA CGATCACAAA 301 GAGATCCAAA TATGGCTTAA AAATCCCTTT TATTAAACTC ATAAACGCAG CAGGGGCATT 361 CATAAGACCA AAAGACATCA CTACAAATTT GTAATGCCCA TACCTGGTTC TAAAAGCAGT 421 CTTTGGCACA TCCGTTGCCC GTATTTTCAA TTGATGATAA CCGGATCTCA AGTCAATCTT 481 AGAAAAGACA CAAGCACCTT GTAACTGATC GAACAAGTCA TTAATGCGAG GAAGAGGATA 541 CTTGTTCTTT ATGGTTACCT TGTTCAACTG CCGGTAGCCT ATGCACATCC GAAAAC Predicted gene structure (within gDNA segment 32848 to 30287): Exon 1 31915 31320 ( 596 n); cDNA 1 596 ( 596 n); score: 0.876 MATCH C04HBa0077O05.1- SGN-E375319+ 0.876 596 1.000 C PGS_C04HBa0077O05.1-_SGN-E375319+ (31915 31320) Alignment (genomic DNA sequence = upper lines): GAATCCCTTG ACAAATCGAC GGTAATAGCT AGCTAAACCA ACAAAGCTCC TTATTTCTGA 31856 |||||||||| |||||||| | |||| ||||| |||||| ||| |||||||||| |||||||||| GAATCCCTTG ACAAATCGGC GGTAGTAGCT AGCTAACCCA ACAAAGCTCC TTATTTCTGA 60 CACATTAGTA GGTCTTAACC AATTCTTCAC TGTCTCAATC TTATAAGGAT CCACCATCAC 31796 |||||||||| ||||||| || |||||||||| |||||||||| ||| |||||| |||||||||| CACATTAGTA GGTCTTACCC AATTCTTCAC TGTCTCAATC TTAGAAGGAT CCACCATCAC 120 GCCCTCCTTA GACACCACGT GCCCCAAGAA GGACACTGAA TCAAGCCAAA ATTCACACTT 31736 || |||||| || ||||||| ||||||||| ||||||| | || ||||||| | |||||||| TCCATCCTTA GAAACCACGT TCCCCAAGAA GGACACTACA TCTAGCCAAA ACTCACACTT 180 GGATAATTTG GCATAGAGCT TCTTCTCCCT TAACATTTTC AGTACCATTC TCAAGTGTTC 31676 || || ||| ||||| | || | |||||||| ||||||| | | |||||||| |||| || || AGAGAACTTG GCATAAAACT TTTTCTCCCT CAACATTTCC AATACCATTC TCAAATGCTC 240 CTCATGTTCC TTCTTGCTCT TTGAGTATAC CAATATATCA TCAATAAATA CGATCACAAA 31616 ||||||||| | ||| || | | ||||||| || ||||||| |||||||||| |||||||||| TTCATGTTCC TCCTTACTTT TAGAGTATAT CAGTATATCA TCAATAAATA CGATCACAAA 300 GAGATCCAGA TATGGCTTAA AAATCCTATT CATCAAGCTC ATGAAAGCAG CAGGGGCATT 31556 |||||||| | |||||||||| |||||| || || || ||| || || |||| |||||||||| GAGATCCAAA TATGGCTTAA AAATCCCTTT TATTAAACTC ATAAACGCAG CAGGGGCATT 360 CGTAAGCCTA AAAGACATTA CTAAGAACTC ATAATGCCTA TACCTGGTCC GAAAAGCAGT 31496 | |||| | | |||||||| | ||| || | ||||||| | |||||||| | ||||||||| CATAAGACCA AAAGACATCA CTACAAATTT GTAATGCCCA TACCTGGTTC TAAAAGCAGT 420 CTTGGGCACA TCTGCTGCCC GTATTTTCAA TTGATGATAA CCAGATCTCA AGTCGATTTT 31436 ||| |||||| || | ||||| |||||||||| |||||||||| || ||||||| |||| || || CTTTGGCACA TCCGTTGCCC GTATTTTCAA TTGATGATAA CCGGATCTCA AGTCAATCTT 480 TGAGAAGGTA CAAGCACCTT GTAACTGATC GAACAAATCA TCAATGCGAG GAAGAGGATA 31376 || ||| | |||||||||| |||||||||| |||||| ||| | |||||||| |||||||||| AGAAAAGACA CAAGCACCTT GTAACTGATC GAACAAGTCA TTAATGCGAG GAAGAGGATA 540 CTTGTTCTTA ATCGTTACCT TATTTAGTTG TCTGTAATCT ATGCACATCC TAAAAC 31320 ||||||||| || ||||||| | || | || | ||| || |||||||||| ||||| CTTGTTCTTT ATGGTTACCT TGTTCAACTG CCGGTAGCCT ATGCACATCC GAAAAC 596 hqPGS_C04HBa0077O05.1-_SGN-E375319+ (31915 31320) ******************************************************************************** EST sequence 196 +strand 526 n (File: SGN-E204434+) 1 GAATCCCTTG ACAAATCGGC GGTAGTAGCT AGCTAACCCA ACAAAGCTCC TTATTTCTGA 61 CACATTAGTA GGTCTTACCC AATTCTTCAC TGTCTCAATC TTAGAAGGAT CCACCATCAC 121 TCCATCCTTA GAAACCACGT TCCCCAAGAA GGACACTACA TCTAGCCAAA ACTCACACTT 181 AGAGAACTTG GCATAAAACT TTTTCTCCCT CAACATTTCC AATACCATTC TCAAATGCTC 241 TTCATGTTCC TCCTTACTTT TAGAGTATAT CAGTATATCA TCAATAAATA CGATCACAAA 301 GAGATCCAAA TATGGCTTAA AAATCCCTTT TATTAAACTC ATAAACGCAG CAGGGGCATT 361 CATAAGACCA AAAGACATCA CTACAAATTT GTAATGCCCA TACCTGGTTC TAAAAGCAGT 421 CTTTGGCACA TCCGTTGCCC GTATTTTCAA TTGATGATAA CCGGATCTCA AGTCAATCTT 481 AGAAAAGACA CAAGCACCTT GTAACTGATC GAACAAGTCA TTAATG Predicted gene structure (within gDNA segment 32848 to 28980): Exon 1 31915 31390 ( 526 n); cDNA 1 526 ( 526 n); score: 0.880 MATCH C04HBa0077O05.1- SGN-E204434+ 0.880 526 1.000 C PGS_C04HBa0077O05.1-_SGN-E204434+ (31915 31390) Alignment (genomic DNA sequence = upper lines): GAATCCCTTG ACAAATCGAC GGTAATAGCT AGCTAAACCA ACAAAGCTCC TTATTTCTGA 31856 |||||||||| |||||||| | |||| ||||| |||||| ||| |||||||||| |||||||||| GAATCCCTTG ACAAATCGGC GGTAGTAGCT AGCTAACCCA ACAAAGCTCC TTATTTCTGA 60 CACATTAGTA GGTCTTAACC AATTCTTCAC TGTCTCAATC TTATAAGGAT CCACCATCAC 31796 |||||||||| ||||||| || |||||||||| |||||||||| ||| |||||| |||||||||| CACATTAGTA GGTCTTACCC AATTCTTCAC TGTCTCAATC TTAGAAGGAT CCACCATCAC 120 GCCCTCCTTA GACACCACGT GCCCCAAGAA GGACACTGAA TCAAGCCAAA ATTCACACTT 31736 || |||||| || ||||||| ||||||||| ||||||| | || ||||||| | |||||||| TCCATCCTTA GAAACCACGT TCCCCAAGAA GGACACTACA TCTAGCCAAA ACTCACACTT 180 GGATAATTTG GCATAGAGCT TCTTCTCCCT TAACATTTTC AGTACCATTC TCAAGTGTTC 31676 || || ||| ||||| | || | |||||||| ||||||| | | |||||||| |||| || || AGAGAACTTG GCATAAAACT TTTTCTCCCT CAACATTTCC AATACCATTC TCAAATGCTC 240 CTCATGTTCC TTCTTGCTCT TTGAGTATAC CAATATATCA TCAATAAATA CGATCACAAA 31616 ||||||||| | ||| || | | ||||||| || ||||||| |||||||||| |||||||||| TTCATGTTCC TCCTTACTTT TAGAGTATAT CAGTATATCA TCAATAAATA CGATCACAAA 300 GAGATCCAGA TATGGCTTAA AAATCCTATT CATCAAGCTC ATGAAAGCAG CAGGGGCATT 31556 |||||||| | |||||||||| |||||| || || || ||| || || |||| |||||||||| GAGATCCAAA TATGGCTTAA AAATCCCTTT TATTAAACTC ATAAACGCAG CAGGGGCATT 360 CGTAAGCCTA AAAGACATTA CTAAGAACTC ATAATGCCTA TACCTGGTCC GAAAAGCAGT 31496 | |||| | | |||||||| | ||| || | ||||||| | |||||||| | ||||||||| CATAAGACCA AAAGACATCA CTACAAATTT GTAATGCCCA TACCTGGTTC TAAAAGCAGT 420 CTTGGGCACA TCTGCTGCCC GTATTTTCAA TTGATGATAA CCAGATCTCA AGTCGATTTT 31436 ||| |||||| || | ||||| |||||||||| |||||||||| || ||||||| |||| || || CTTTGGCACA TCCGTTGCCC GTATTTTCAA TTGATGATAA CCGGATCTCA AGTCAATCTT 480 TGAGAAGGTA CAAGCACCTT GTAACTGATC GAACAAATCA TCAATG 31390 || ||| | |||||||||| |||||||||| |||||| ||| | |||| AGAAAAGACA CAAGCACCTT GTAACTGATC GAACAAGTCA TTAATG 526 hqPGS_C04HBa0077O05.1-_SGN-E204434+ (31915 31390) ******************************************************************************** EST sequence 242 +strand 587 n (File: SGN-E352950+) 1 CCTCTGTAAG AATAGTGTGA ATCAAATCGT CGGCACGGGG TACACATACC TTTCCCTTAA 61 TCCTCAAAAC ACCTTCCTTA TCGATTTTTG CTTCTTTAGC CTCTCCTCGC ATTACCTTAT 121 CTCGAATCCA GATCAGTTTC TCATCGGTAA ACTGCTTTCC TTTAATCTTA TCAAGAAAGG 181 AAGATCTTGC CTCCACACAA GCCAAAAATT CTCCCTTCTC ATTTAATTCT AGCCTCATAA 241 GGTCATTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCA TCTAGAAACC TGCAAGTGAG 301 CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAAGCATC TGCCACAACA TTAGCCTTTC 361 CCGGATGATA CAAGATAGTG ATATCATAGT CCTTCAGTAG CTCCATCGAT CTCCTCTGTC 421 TCAAATTCAA ATCTTTCTGA GTAAAGACAT ACTGTAAACT ACGATGATCC ATATAGACTT 481 CACACTTAAC CCCATAGAGA TAATGTCTCT ATTACTTTAA TGCAATCACT ACTGCCGCTA 541 ACTCCAAATC ATGGGTCGGA TAATTACGTT CATGCACCTT TAATTGC Predicted gene structure (within gDNA segment 35615 to 31389): Exon 1 32729 32143 ( 587 n); cDNA 1 587 ( 587 n); score: 0.889 MATCH C04HBa0077O05.1- SGN-E352950+ 0.889 587 1.000 C PGS_C04HBa0077O05.1-_SGN-E352950+ (32729 32143) Alignment (genomic DNA sequence = upper lines): CCTCTGTCAG AATAGTGTTG ATCAGATCAT CGAAGCGGGG TACACATACC ATTCCCTTGA 32670 ||||||| || |||||||| |||| ||| | || ||||| |||||||||| ||||||| | CCTCTGTAAG AATAGTGTGA ATCAAATCGT CGGCACGGGG TACACATACC TTTCCCTTAA 60 TTCTCAAAAC ACCTTTCTCA TCGATTTGTG CTTCCTTAGC CTCTCCTCGC AATACTTTAT 32610 | |||||||| ||||| || | ||||||| || |||| ||||| |||||||||| | ||| |||| TCCTCAAAAC ACCTTCCTTA TCGATTTTTG CTTCTTTAGC CTCTCCTCGC ATTACCTTAT 120 CTTGGATTCT GCTTAGTTTC TCATCCTCAA ACTGTTTTTC CTTAATCTTG TCAAGAAAAG 32550 || | || | | | |||||| ||||| || |||| ||| | |||||||| |||||||| | CTCGAATCCA GATCAGTTTC TCATCGGTAA ACTGCTTTCC TTTAATCTTA TCAAGAAAGG 180 AAGATCTTGC CTCCACACAA GCCAACAATC CTCCCTTCTC ATTTACTTCT AACCTCATCA 32490 |||||||||| |||||||||| ||||| ||| |||||||||| ||||| |||| | |||||| | AAGATCTTGC CTCCACACAA GCCAAAAATT CTCCCTTCTC ATTTAATTCT AGCCTCATAA 240 AGTCGTTAGC CAGGGTCTGA ACCTCTCTAG CCAATGGACG TCTAGAAACT TGCAAGTGAG 32430 ||| ||||| ||| |||||| |||||||||| ||||||| | ||||||||| |||||||||| GGTCATTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCA TCTAGAAACC TGCAAGTGAG 300 CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAGGCGTC TGCCACAACA TTAGCCTTTC 32370 |||||||||| |||||||||| |||||||||| |||| || || |||||||||| |||||||||| CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAAGCATC TGCCACAACA TTAGCCTTTC 360 CCGGATGATA CAAGATAGTG ATGTCGTAGT CCTTCAGTAG TTCCATCCAT CTCCTCTGTC 32310 |||||||||| |||||||||| || || |||| |||||||||| |||||| || |||||||||| CCGGATGATA CAAGATAGTG ATATCATAGT CCTTCAGTAG CTCCATCGAT CTCCTCTGTC 420 TCAAGTTCAA ATCTTTCTGA GTAAAGACGT ACTGTAGGCT ACGATGATCC GTGTAGACCT 32250 |||| ||||| |||||||||| |||||||| | |||||| || |||||||||| | ||||| | TCAAATTCAA ATCTTTCTGA GTAAAGACAT ACTGTAAACT ACGATGATCC ATATAGACTT 480 CACACTTAGC TCCATATAGA TAATGTCTCC ATTGCTTTAA TGCAAACACT ACCGCAGCCA 32190 |||||||| | ||||| ||| ||||||||| ||| |||||| ||||| |||| || || || | CACACTTAAC CCCATAGAGA TAATGTCTCT ATTACTTTAA TGCAATCACT ACTGCCGCTA 540 ACTCCAAATC ATGGGTCGGA TAATTACGTT CGTGCACCTT TAATTGC 32143 |||||||||| |||||||||| |||||||||| | |||||||| ||||||| ACTCCAAATC ATGGGTCGGA TAATTACGTT CATGCACCTT TAATTGC 587 hqPGS_C04HBa0077O05.1-_SGN-E352950+ (32729 32143) ******************************************************************************** EST sequence 286 +strand 587 n (File: SGN-E357100+) 1 CCTCTGTAAG AATAGTGTGA ATCAAATCGT CGGCACGGGG TACACATACC TTTCCCTTAA 61 TCCTCAAAAC ACCTTCCTTA TCGATTTTTG CTTCTTTAGC CTCTCCTCGC ATTACCTTAT 121 CTCGAATCCA GATCAGTTTC TCATCGGTAA ACTGCTTTCC TTTAATCTTA TCAAGAAAGG 181 AAGATCTTGC CTCCACACAA GCCAAAAATT CTCCCTTCTC ATTTAATTCT AGCCTCATAA 241 GGTCATTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCA TCTAGAAACC TGCAAGTGAG 301 CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAAGCATC TGCCACAACA TTAGCCTTTC 361 CCGGATGATA CAAGATAGTG ATATCATAGT CCTTCAGTAG CTCCATCGAT CTCCTCTGTC 421 TCAAATTCAA ATCTTTCTGA GTAAAGACAT ACTGTAAACT ACGATGATCC ATATAGACTT 481 CACACTTAAC CCCATAGAGA TAATGTCTCT ATTACTTTAA TGCAATCACT ACTGCCGCTA 541 ACTCCAAATC ATGGGTCGGA TAATTACGTT CATGCACCTT TAATTGC Predicted gene structure (within gDNA segment 35615 to 31389): Exon 1 32729 32143 ( 587 n); cDNA 1 587 ( 587 n); score: 0.889 MATCH C04HBa0077O05.1- SGN-E357100+ 0.889 587 1.000 C PGS_C04HBa0077O05.1-_SGN-E357100+ (32729 32143) Alignment (genomic DNA sequence = upper lines): CCTCTGTCAG AATAGTGTTG ATCAGATCAT CGAAGCGGGG TACACATACC ATTCCCTTGA 32670 ||||||| || |||||||| |||| ||| | || ||||| |||||||||| ||||||| | CCTCTGTAAG AATAGTGTGA ATCAAATCGT CGGCACGGGG TACACATACC TTTCCCTTAA 60 TTCTCAAAAC ACCTTTCTCA TCGATTTGTG CTTCCTTAGC CTCTCCTCGC AATACTTTAT 32610 | |||||||| ||||| || | ||||||| || |||| ||||| |||||||||| | ||| |||| TCCTCAAAAC ACCTTCCTTA TCGATTTTTG CTTCTTTAGC CTCTCCTCGC ATTACCTTAT 120 CTTGGATTCT GCTTAGTTTC TCATCCTCAA ACTGTTTTTC CTTAATCTTG TCAAGAAAAG 32550 || | || | | | |||||| ||||| || |||| ||| | |||||||| |||||||| | CTCGAATCCA GATCAGTTTC TCATCGGTAA ACTGCTTTCC TTTAATCTTA TCAAGAAAGG 180 AAGATCTTGC CTCCACACAA GCCAACAATC CTCCCTTCTC ATTTACTTCT AACCTCATCA 32490 |||||||||| |||||||||| ||||| ||| |||||||||| ||||| |||| | |||||| | AAGATCTTGC CTCCACACAA GCCAAAAATT CTCCCTTCTC ATTTAATTCT AGCCTCATAA 240 AGTCGTTAGC CAGGGTCTGA ACCTCTCTAG CCAATGGACG TCTAGAAACT TGCAAGTGAG 32430 ||| ||||| ||| |||||| |||||||||| ||||||| | ||||||||| |||||||||| GGTCATTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCA TCTAGAAACC TGCAAGTGAG 300 CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAGGCGTC TGCCACAACA TTAGCCTTTC 32370 |||||||||| |||||||||| |||||||||| |||| || || |||||||||| |||||||||| CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAAGCATC TGCCACAACA TTAGCCTTTC 360 CCGGATGATA CAAGATAGTG ATGTCGTAGT CCTTCAGTAG TTCCATCCAT CTCCTCTGTC 32310 |||||||||| |||||||||| || || |||| |||||||||| |||||| || |||||||||| CCGGATGATA CAAGATAGTG ATATCATAGT CCTTCAGTAG CTCCATCGAT CTCCTCTGTC 420 TCAAGTTCAA ATCTTTCTGA GTAAAGACGT ACTGTAGGCT ACGATGATCC GTGTAGACCT 32250 |||| ||||| |||||||||| |||||||| | |||||| || |||||||||| | ||||| | TCAAATTCAA ATCTTTCTGA GTAAAGACAT ACTGTAAACT ACGATGATCC ATATAGACTT 480 CACACTTAGC TCCATATAGA TAATGTCTCC ATTGCTTTAA TGCAAACACT ACCGCAGCCA 32190 |||||||| | ||||| ||| ||||||||| ||| |||||| ||||| |||| || || || | CACACTTAAC CCCATAGAGA TAATGTCTCT ATTACTTTAA TGCAATCACT ACTGCCGCTA 540 ACTCCAAATC ATGGGTCGGA TAATTACGTT CGTGCACCTT TAATTGC 32143 |||||||||| |||||||||| |||||||||| | |||||||| ||||||| ACTCCAAATC ATGGGTCGGA TAATTACGTT CATGCACCTT TAATTGC 587 hqPGS_C04HBa0077O05.1-_SGN-E357100+ (32729 32143) ******************************************************************************** EST sequence 225 +strand 554 n (File: SGN-E352647+) 1 CCTCTGTAAG AATAGTGTGA ATCAAATCGT CGGCACGGGG TACACATACC TTTCCCTTAA 61 TCCTCAAAAC ACCTTCCTTA TCGATTTTTG CTTCTTTAGC CTCTCCTCGC ATTACCTTAT 121 CTCGAATCCA GATCAGTTTC TCATCGGTAA ACTGCTTTCC TTTAATCTTA TCAAGAAAGG 181 AAGATCTTGC CTCCACACAA GCCAAAAATT CTCCCTTCTC ATTTAATTCT AGCCTCATAA 241 GGTCATTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCA TCTAGAAACC TGCAAGTGAG 301 CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAAGCATC TGCCACAACA TTAGCCTTTC 361 CCGGATGATA CAAGATAGTG ATATCATAGT CCTTCAGTAG CTCCATCGAT CTCCTCTGTC 421 TCAAATTCAA ATCTTTCTGA GTAAAGACAT ACTGTAAACT ACGATGATCC ATATAGACTT 481 CACACTTAAA CCCATAGAGA TAATGGCTCT ATTACTTTAA TGCAATCACT ACTGCCGCTA 541 ACTCCAAATC ATGG Predicted gene structure (within gDNA segment 35615 to 30612): Exon 1 32729 32176 ( 554 n); cDNA 1 554 ( 554 n); score: 0.881 MATCH C04HBa0077O05.1- SGN-E352647+ 0.881 554 1.000 C PGS_C04HBa0077O05.1-_SGN-E352647+ (32729 32176) Alignment (genomic DNA sequence = upper lines): CCTCTGTCAG AATAGTGTTG ATCAGATCAT CGAAGCGGGG TACACATACC ATTCCCTTGA 32670 ||||||| || |||||||| |||| ||| | || ||||| |||||||||| ||||||| | CCTCTGTAAG AATAGTGTGA ATCAAATCGT CGGCACGGGG TACACATACC TTTCCCTTAA 60 TTCTCAAAAC ACCTTTCTCA TCGATTTGTG CTTCCTTAGC CTCTCCTCGC AATACTTTAT 32610 | |||||||| ||||| || | ||||||| || |||| ||||| |||||||||| | ||| |||| TCCTCAAAAC ACCTTCCTTA TCGATTTTTG CTTCTTTAGC CTCTCCTCGC ATTACCTTAT 120 CTTGGATTCT GCTTAGTTTC TCATCCTCAA ACTGTTTTTC CTTAATCTTG TCAAGAAAAG 32550 || | || | | | |||||| ||||| || |||| ||| | |||||||| |||||||| | CTCGAATCCA GATCAGTTTC TCATCGGTAA ACTGCTTTCC TTTAATCTTA TCAAGAAAGG 180 AAGATCTTGC CTCCACACAA GCCAACAATC CTCCCTTCTC ATTTACTTCT AACCTCATCA 32490 |||||||||| |||||||||| ||||| ||| |||||||||| ||||| |||| | |||||| | AAGATCTTGC CTCCACACAA GCCAAAAATT CTCCCTTCTC ATTTAATTCT AGCCTCATAA 240 AGTCGTTAGC CAGGGTCTGA ACCTCTCTAG CCAATGGACG TCTAGAAACT TGCAAGTGAG 32430 ||| ||||| ||| |||||| |||||||||| ||||||| | ||||||||| |||||||||| GGTCATTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCA TCTAGAAACC TGCAAGTGAG 300 CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAGGCGTC TGCCACAACA TTAGCCTTTC 32370 |||||||||| |||||||||| |||||||||| |||| || || |||||||||| |||||||||| CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAAGCATC TGCCACAACA TTAGCCTTTC 360 CCGGATGATA CAAGATAGTG ATGTCGTAGT CCTTCAGTAG TTCCATCCAT CTCCTCTGTC 32310 |||||||||| |||||||||| || || |||| |||||||||| |||||| || |||||||||| CCGGATGATA CAAGATAGTG ATATCATAGT CCTTCAGTAG CTCCATCGAT CTCCTCTGTC 420 TCAAGTTCAA ATCTTTCTGA GTAAAGACGT ACTGTAGGCT ACGATGATCC GTGTAGACCT 32250 |||| ||||| |||||||||| |||||||| | |||||| || |||||||||| | ||||| | TCAAATTCAA ATCTTTCTGA GTAAAGACAT ACTGTAAACT ACGATGATCC ATATAGACTT 480 CACACTTAGC TCCATATAGA TAATGTCTCC ATTGCTTTAA TGCAAACACT ACCGCAGCCA 32190 |||||||| ||||| ||| ||||| ||| ||| |||||| ||||| |||| || || || | CACACTTAAA CCCATAGAGA TAATGGCTCT ATTACTTTAA TGCAATCACT ACTGCCGCTA 540 ACTCCAAATC ATGG 32176 |||||||||| |||| ACTCCAAATC ATGG 554 hqPGS_C04HBa0077O05.1-_SGN-E352647+ (32729 32176) ******************************************************************************** EST sequence 157 +strand 654 n (File: SGN-E578131+) 1 GTAAACTGCA TACCTCTATC TGATATGATG GAGAGTGGAA CTCCATGCAA TCGAACGATT 61 TCTGAGATAT AGATTCTGAC TAACTTCTCT ACATTGTAGG TCACCTTGAC CGGAATGCAA 121 TGAGCAGACT TAGTCAATCT GTCAACAATT ACACAAATGG AGTCATACTT ACCCATTGTC 181 TTTGGAAGGC CAACCACGAA GTCCATTGCA ATTCTCTCCC ACTTCCATTC AGGAATGGGC 241 ATTCTCTGAA GTGTCCGTCC AGGCCTTTGC TGTTCATACT TTACATGCTG ACCATTCGGT 301 TAGAAATGCT AATGGACGCT ACTTTCCCAC TAGTTCAAAA TTTGTGAAGC CACGGGCTTG 361 CTTGAAGATT GGTCTTGGTC TCTTAACAAA ACAGATCCGC TGATATGTTT CTAATTATGC 421 AGAGGATTTT GCAAGAAAGA GTTGTTAGTA GCCGGGAAGC TGAACTCAAT AGATTGAAGC 481 AGGAGAGACG AGAAAGGATC AGCCAGATAA TTCAATCAAG GAAGCAGGAG AGGGAAGCTA 541 AGAGGAAAAT GTTATTCTTT CTGCGAACTG AGGAGGAGCG TCAAAAGAGG TTACTGGAAG 601 AGGAGGAAGC CCGCAAACGT GAAGGTTCTC CTGTGGGAAG CCGGACTTGC TAAG Predicted gene structure (within gDNA segment 35441 to 28277): Exon 1 33140 32859 ( 282 n); cDNA 1 281 ( 281 n); score: 0.883 Intron 1 32858 29598 (3261 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0) Exon 2 29597 29572 ( 26 n); cDNA 282 305 ( 24 n); score: 0.692 Intron 2 29571 29074 ( 498 n); Pd: 0.000 (s: 0), Pa: 0.250 (s: 0) Exon 3 29073 29067 ( 7 n); cDNA 306 312 ( 7 n); score: 0.714 MATCH C04HBa0077O05.1- SGN-E578131+ 0.883 315 0.482 C PGS_C04HBa0077O05.1-_SGN-E578131+ (33140 32859,29597 29572,29073 29067) Alignment (genomic DNA sequence = upper lines): GTAAACATCG TTCCTCTATC TGATATGATG GAGAGTGGAA CCCCATGCAA TCGAACAATT 33081 |||||| | | |||||||| |||||||||| |||||||||| | |||||||| |||||| ||| GTAAACTGCA TACCTCTATC TGATATGATG GAGAGTGGAA CTCCATGCAA TCGAACGATT 60 TCTGAGATGT AAATTTTGGC TAACTTCTCT GCATTATAAG TCACCTTGAC CGGAATGAAA 33021 |||||||| | | ||| || | |||||||||| |||| || | |||||||||| ||||||| || TCTGAGATAT AGATTCTGAC TAACTTCTCT ACATTGTAGG TCACCTTGAC CGGAATGCAA 120 TGAACAGACT TAGTTAATCT GTCCACAATT ACCCAAATAG AGTCAAACTT CCCCAATGTC 32961 ||| |||||| |||| ||||| ||| |||||| || ||||| | ||||| |||| |||| |||| TGAGCAGACT TAGTCAATCT GTCAACAATT ACACAAATGG AGTCATACTT ACCCATTGTC 180 TTTGGAAGAC CAACCACGAA GTCCATTGCA ATTCTCTCCC ACTTTCATTC AGGAATGGGC 32901 |||||||| | |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| TTTGGAAGGC CAACCACGAA GTCCATTGCA ATTCTCTCCC ACTTCCATTC AGGAATGGGC 240 ATTCTCTGAA GTGTTCCTCC GGGCCTCTAG TGTACTTTAC TTGCTGACAA TTTGGACATT 32841 |||||||||| |||| | ||| ||||| | ||| | ||| || ATTCTCTGAA GTGTCCGTCC AGGCCTTTGC TGTTC-ATAC TT........ .......... 281 TGGCAACAAA ATCCACAATG TCGCGCTTCA TCCTACTCCA CCAAAAGTGT TGCTTTAGGT 32781 .......... .......... .......... .......... .......... .......... 281 CACGATACAT CTTGGTTGCA CCAGGATGTA TAGAATACCT TGAACTATGA GCCTCTGTCA 32721 .......... .......... .......... .......... .......... .......... 281 GAATAGTGTT GATCAGATCA TCGAAGCGGG GTACACATAC CATTCCCTTG ATTCTCAAAA 32661 .......... .......... .......... .......... .......... .......... 281 CACCTTTCTC ATCGATTTGT GCTTCCTTAG CCTCTCCTCG CAATACTTTA TCTTGGATTC 32601 .......... .......... .......... .......... .......... .......... 281 TGCTTAGTTT CTCATCCTCA AACTGTTTTT CCTTAATCTT GTCAAGAAAA GAAGATCTTG 32541 .......... .......... .......... .......... .......... .......... 281 CCTCCACACA AGCCAACAAT CCTCCCTTCT CATTTACTTC TAACCTCATC AAGTCGTTAG 32481 .......... .......... .......... .......... .......... .......... 281 CCAGGGTCTG AACCTCTCTA GCCAATGGAC GTCTAGAAAC TTGCAAGTGA GCTAGACTTC 32421 .......... .......... .......... .......... .......... .......... 281 CCATGCTCCC TGCCTTTCTA CTTAAGGCGT CTGCCACAAC ATTAGCCTTT CCCGGATGAT 32361 .......... .......... .......... .......... .......... .......... 281 ACAAGATAGT GATGTCGTAG TCCTTCAGTA GTTCCATCCA TCTCCTCTGT CTCAAGTTCA 32301 .......... .......... .......... .......... .......... .......... 281 AATCTTTCTG AGTAAAGACG TACTGTAGGC TACGATGATC CGTGTAGACC TCACACTTAG 32241 .......... .......... .......... .......... .......... .......... 281 CTCCATATAG ATAATGTCTC CATTGCTTTA ATGCAAACAC TACCGCAGCC AACTCCAAAT 32181 .......... .......... .......... .......... .......... .......... 281 CATGGGTCGG ATAATTACGT TCGTGCACCT TTAATTGCCT CGAAGCATAA GCAATTACAT 32121 .......... .......... .......... .......... .......... .......... 281 TCTTCTCTTG CATTAGTACT GCACCCAAAC CCGAATAGGA TGCATCACAA TAGACAACTA 32061 .......... .......... .......... .......... .......... .......... 281 AATTCTTACC TTCCACTGGC AAGGTAAGGA TTGGTGCGGT AGTCAACAAG GTCTTGAGCT 32001 .......... .......... .......... .......... .......... .......... 281 TCTGAAAGCT TTCTTCACAT TCATCCGACC ATACAAATGG AACATTCTGC TTAGTCAAGT 31941 .......... .......... .......... .......... .......... .......... 281 TCGTCAATTG CGAAGCGATG GAAGAGAATC CCTTGACAAA TCGACGGTAA TAGCTAGCTA 31881 .......... .......... .......... .......... .......... .......... 281 AACCAACAAA GCTCCTTATT TCTGACACAT TAGTAGGTCT TAACCAATTC TTCACTGTCT 31821 .......... .......... .......... .......... .......... .......... 281 CAATCTTATA AGGATCCACC ATCACGCCCT CCTTAGACAC CACGTGCCCC AAGAAGGACA 31761 .......... .......... .......... .......... .......... .......... 281 CTGAATCAAG CCAAAATTCA CACTTGGATA ATTTGGCATA GAGCTTCTTC TCCCTTAACA 31701 .......... .......... .......... .......... .......... .......... 281 TTTTCAGTAC CATTCTCAAG TGTTCCTCAT GTTCCTTCTT GCTCTTTGAG TATACCAATA 31641 .......... .......... .......... .......... .......... .......... 281 TATCATCAAT AAATACGATC ACAAAGAGAT CCAGATATGG CTTAAAAATC CTATTCATCA 31581 .......... .......... .......... .......... .......... .......... 281 AGCTCATGAA AGCAGCAGGG GCATTCGTAA GCCTAAAAGA CATTACTAAG AACTCATAAT 31521 .......... .......... .......... .......... .......... .......... 281 GCCTATACCT GGTCCGAAAA GCAGTCTTGG GCACATCTGC TGCCCGTATT TTCAATTGAT 31461 .......... .......... .......... .......... .......... .......... 281 GATAACCAGA TCTCAAGTCG ATTTTTGAGA AGGTACAAGC ACCTTGTAAC TGATCGAACA 31401 .......... .......... .......... .......... .......... .......... 281 AATCATCAAT GCGAGGAAGA GGATACTTGT TCTTAATCGT TACCTTATTT AGTTGTCTGT 31341 .......... .......... .......... .......... .......... .......... 281 AATCTATGCA CATCCTAAAA CTTCCACCCT TCTTCTTCAC AAACAAAACC GGAGCACCCC 31281 .......... .......... .......... .......... .......... .......... 281 AAGGGGATGC ACTTGGTCTA ATGAAGCCTT TGCTCAACAA CTCTTGCAGT TGGGCCTTTA 31221 .......... .......... .......... .......... .......... .......... 281 ACTCTCTTAA CTCCGCGGGA GCTATTGTAT AAGGGGGTAT AGAAATGGGG CCAATACCCG 31161 .......... .......... .......... .......... .......... .......... 281 GTTCAAGATC AATGTAGAAG TCAATATCCC TATCTGGTGG CATACCAGGA AGATCTGCAG 31101 .......... .......... .......... .......... .......... .......... 281 GGAACACATC CAGAAACTCA TGGACTACCG AAACTGACTC AATTGACGGT ACTTGGGTAG 31041 .......... .......... .......... .......... .......... .......... 281 TGTCATCCCT GAGGTGTGCC AAGAAAGCTA AACAACCCTT ACTAACCATT CTCTTAGCAC 30981 .......... .......... .......... .......... .......... .......... 281 GAAGAAAGGA GATGATACGA ACCGGGTTGG AAGTGTAGTT ACCCTCCCAC ACTAACGGAT 30921 .......... .......... .......... .......... .......... .......... 281 CTGTCCCAGG CTTGGCTAAC GTCACAGTTT TAGCATTACA ATCCAAGATT GCAAAATTTG 30861 .......... .......... .......... .......... .......... .......... 281 GAGAAAGCCA AGTCATACCC AGAATTACAT CGAAGTCAAC CATTTCTAAG ATAACCAAGT 30801 .......... .......... .......... .......... .......... .......... 281 CTACATGAGT ATTGCTCCCC ACAAAAGTCA CCAGACCAGA CCTATATACT TTTTCAACTA 30741 .......... .......... .......... .......... .......... .......... 281 TCACAGACTC ACCCACCGGA GTAGAAACAC GAATAGGCAT GTCAAGCAAT TCACAATGTA 30681 .......... .......... .......... .......... .......... .......... 281 AATTAAGACC ATTAGCAAAT GAGGAAGATA CATAAGAAAA TGTGGATCCA GGATCAAACA 30621 .......... .......... .......... .......... .......... .......... 281 ATACAGAAGC CATGCAATCA CAAACCAAAA GATTACCTGT GATAACAACA TCAGATGTCT 30561 .......... .......... .......... .......... .......... .......... 281 CCGCTTCAGA CCGCCCAGGG AAGGCGTAAC AATGGGCCCT ATCACCTGTT TGCCCGTTAC 30501 .......... .......... .......... .......... .......... .......... 281 CCCAACCATG CTGCACCGCA GCCAGTTTGC CCGCCACCCC GGTTGGTTTG GTGACCATCA 30441 .......... .......... .......... .......... .......... .......... 281 TTACCTCGGC CACCACGTTC TCCAGGATAA CGACCTCTTC TATGACCACC TCTACCTCTA 30381 .......... .......... .......... .......... .......... .......... 281 ACTATTGGAG GTCTGTAACT CTGTTTTGGA CAATACCTCT TAATGTGTCC AGTCTCCCCA 30321 .......... .......... .......... .......... .......... .......... 281 CATCCATAAC ACTCTCTGGA TTTAAGCATA GGTCTCTCAG AGAAGTGTTG ACCGGTCTAA 30261 .......... .......... .......... .......... .......... .......... 281 GGTGGACCCC CAACTACAGT CTGTAGTGAA GACTGAATTG GTCGGACTGA GTAACCTCCT 30201 .......... .......... .......... .......... .......... .......... 281 GAACCCTGTC CTCTAGAGTA AGAACCATTA AACTCACCTC CCCTTCGAAA ACTTTTTGAT 30141 .......... .......... .......... .......... .......... .......... 281 GTCGATGCCA TGGTGAAGTC ATCTGGCTTC ACTCCTTCCA CCTCTATCAC GAAGTCCACC 30081 .......... .......... .......... .......... .......... .......... 281 ACTTCTTGAA AGGATTTTGC CGTAGTCGCT ACCTATAAGG CTAAAAATCC GCAATTCTGA 30021 .......... .......... .......... .......... .......... .......... 281 CCTCAACCCC TTCACAAAAC GGCAAATCCG CTCTTATGGA CTGAAACAAA GCTGAGTGGC 29961 .......... .......... .......... .......... .......... .......... 281 ATATCTGGAA AGTTCACGAA ACTTAGCCTC ATATGCAGTA ACCGACATCT TACCTTGCTC 29901 .......... .......... .......... .......... .......... .......... 281 TAGGCTCAAG AATTCATCTC TTTTCCTATC CCTCAAAGTT CGGGGGATAT ACTTCTCCAT 29841 .......... .......... .......... .......... .......... .......... 281 AGACAAGCTA GAGAATGATG CCCAAGTCAT AGGTGGTGCC TCTGTTGGTT GACACTCCAC 29781 .......... .......... .......... .......... .......... .......... 281 ATGCGACCGC CACCACATTT TGGCGTTCCC TTGAAACTGA TAAGTCACAA ACTCAACACC 29721 .......... .......... .......... .......... .......... .......... 281 AAACCGTTCT ACTATACCCA TCTTGTGTAG TAGCTCATGA AACTCAACCA GAAAATCGTA 29661 .......... .......... .......... .......... .......... .......... 281 TGCATCCTCA GATTCAGCAC CCTTGAAGAC TGGAGGTTTC AATTTCAAGA ACTTACTGAA 29601 .......... .......... .......... .......... .......... .......... 281 AAGTTCATGC TGATCATTTG TCATTATAGG CCCTGTAGTC AGACGAGGAA ATGTGCCTAT 29541 | ||||| ||| |||| | ||| | ...TACATGC TGACCATTCG --GTTAGAA. .......... .......... .......... 305 TTACAATGAG GCATCCATGC AGGGAGCCAC AGTAGTCGCA TGTTGTACCT CCGGAGCCTG 29481 .......... .......... .......... .......... .......... .......... 305 AGGTGCTGGT GCAGAAAACA CTGGAGGTGT CTGGCCTTGA TCAGATAGCC CGCTAAGATA 29421 .......... .......... .......... .......... .......... .......... 305 AGCAAGAACC TGATTGATCA TCTCTGGGGT AGGTTGGGGT GGCAATTCCT CATTCTGTAC 29361 .......... .......... .......... .......... .......... .......... 305 TTGCTCATTT TCCCTTTCCT CACCCTCTCT TACCACTTCC TCAGTTGGTG GAGGAGTCAC 29301 .......... .......... .......... .......... .......... .......... 305 CGCCCTAGTA CCAGATGGGC TAGGTGCTCG TCCTCTTCTC CTAGAGGACG TCCTCCCACG 29241 .......... .......... .......... .......... .......... .......... 305 ATCTCTTCCG CGGCCTCTTG CCACTGCTCC TCTTCGAGCT ACAGTCTCAG TGGCTGGCTC 29181 .......... .......... .......... .......... .......... .......... 305 AGATGCATCT TGTCTTGCTG ATGTTGATGT TGGCGCGGTC GTTGCTCTAG TTCTAACCAT 29121 .......... .......... .......... .......... .......... .......... 305 CTGCGAAATA GAGTGAAGAT GGTCAGATAC CAATTTGTAT CACCTAGATA CCAA 29067 || | || .......... .......... .......... .......... .......ATG CTAA 312 hqPGS_C04HBa0077O05.1-_SGN-E578131+ (33140 32859) ******************************************************************************** EST sequence 4 -strand 774 n (File: SGN-E349977-) 1 AGTAGATATC ATCGCTAACT CAAAATAGGG AACAATATAT ATCAATAATA ATGTAAATCA 61 ACTACAATAC TCATCATGTA GCAATAGCAA TTTCTTNATC ATTAACAATT ACCGTCAAGT 121 TCACACATGA GGACTCAAGC CTCAATACCA TACTCATTTG GGAATTAAGT TCATTAGATT 181 GAGTATATTC ATTATCTTTC AAGATTCATT ATCTTTCTTC CTCTTGTGTC GGTACGTGAC 241 ACTCCGCTCC TCTATTTCTA TCCTGGTGCC GGAACGTGGC ACTCCGATCC TCATATTCAT 301 TCTATCCTGG TACCGGAACG TGGCACCCGA TCCTCATATT CTATCCTGGT GTCGGAACGT 361 AACACTCCGA TCCTCATATT CATTCTATCC TGGTACCGGA ACGTGGCACC CGATCCTCAT 421 ATTCTATCCT GGTGTCGGAA CGTGACACTC CGATCCTCAT ATTCTATCCT GGTGTCGGAA 481 CGTGACACTC CGATCCTCAT ATTCATTCTA TCCTGGTACC GAAACGTGGC ACCCGATCCC 541 CTAATTCATC AAGCCTTCTT CTACACTAAG GCATCATCAT TCTCATTATA TAATTTATCA 601 AGCCTTCTCT CATACTAAGG CCTCATCAAT CTTATTATAT AATATATCAA GTGAATTAGG 661 GTTCTTTCAA GATTTGGGAT TCAATAGCTT CATCATGCTT TGTTAATTCA TAACAATTTC 721 ATAATCATAA TCATGCAAGC ATACCAATAA GCATATAGAC AGGTTTACAA CATC Predicted gene structure (within gDNA segment 39464 to 31804): Exon 1 35485 35188 ( 298 n); cDNA 1 297 ( 297 n); score: 0.745 Intron 1 35187 35154 ( 34 n); Pd: 0.000 (s: 0.73), Pa: 0.000 (s: 0.83) Exon 2 35153 34909 ( 245 n); cDNA 298 555 ( 258 n); score: 0.743 Intron 2 34908 33620 (1289 n); Pd: 0.045 (s: 0.84), Pa: 0.000 (s: 0) Exon 3 33619 33587 ( 33 n); cDNA 556 587 ( 32 n); score: 0.636 Intron 3 33586 33476 ( 111 n); Pd: 0.635 (s: 0), Pa: 0.000 (s: 0) Exon 4 33475 33449 ( 27 n); cDNA 588 612 ( 25 n); score: 0.741 MATCH C04HBa0077O05.1- SGN-E349977- 0.744 603 0.779 C PGS_C04HBa0077O05.1-_SGN-E349977- (35485 35188,35153 34909,33619 33587,33475 33449) Alignment (genomic DNA sequence = upper lines): AGTAGATATC ATCGGCCAAC TCAAAATAGA AAACAGTATA TATCAGATAA TATCATAAAA 35426 |||||||||| ||| || ||| ||||||||| |||| |||| ||||| |||| || | ||| AGTAGATATC ATC-GCTAAC TCAAAATAGG GAACAATATA TATCA-ATAA TAATGT-AAA 57 TCAACTACAG TACTTAACAT GCAACATTTA CAATTACCAT AACCCTTGGT CA-TAACACC 35367 ||||||||| |||| | ||| | | || | ||||| | | | | || | || | | TCAACTACAA TACTCATCAT GTAGCAATAG CAATT-TCTT NATCATTAAC AATTACCGTC 116 AATCTCATCA ATGAGGACTC ACGCCTCCCC ATCATACTCA TTTGAGAATT AGGTTCATTA 35307 || ||| |||||||||| | ||||| | |||||||| |||| ||||| | |||||||| AAGTTCACAC ATGAGGACTC AAGCCTCAAT ACCATACTCA TTTGGGAATT AAGTTCATTA 176 AATTAAGTAT ATT-AACATA TTTCAAGATT CATTCTCTTT ACTAATCCTG GTGCCGGAAC 35248 ||| ||||| ||| | || |||||||||| |||| ||||| || || ||| ||| || GATTGAGTAT ATTCATTATC TTTCAAGATT CATTATCTTT -CTTCCTCTT GTGTCGGTAC 235 GTGACACTCC GATCCTCATA TACTATCCTG GTACCGG-AC GTGGCAC-CC GATCCATATA 35190 |||||||||| | ||||| | |||||||| || |||| || ||||||| || ||||| ||| GTGACACTCC GCTCCTCTAT TTCTATCCTG GTGCCGGAAC GTGGCACTCC GATCCTCATA 295 CTATCCTGGT GTCGGAACGT GACACTCCGA TCCTCATATA CTATCCTGGT ACCGGAACGT 35130 | || |||||||||| |||||||||| TT........ .......... .......... ......CATT CTATCCTGGT ACCGGAACGT 321 GGCACCCGAT -C-CATATAC TATCCTGGTG TCGGAACGTG ACAC-CCGAT -C-CATA-T- 35077 |||||||||| | ||||| | |||||||||| ||||||||| |||| ||||| | |||| | GGCACCCGAT CCTCATATTC TATCCTGGTG TCGGAACGTA ACACTCCGAT CCTCATATTC 381 A--CTATCCT GGTGTCGGAA CGTGACACTC CGATCCTCAC ATACTATCCT GGTACCGGAA 35019 | ||||||| ||| ||||| |||| ||| | ||||||||| || ||||||| ||| ||||| ATTCTATCCT GGTACCGGAA CGTGGCAC-C CGATCCTCAT ATTCTATCCT GGTGTCGGAA 440 CGTGGCAC-C CGAT-C-CAT ATACTATCCT GGTGTCGAAA CGTGACACTC CGATCCTCAT 34962 |||| ||| | |||| | ||| || ||||||| ||||||| || |||||||||| |||||||||| CGTGACACTC CGATCCTCAT ATTCTATCCT GGTGTCGGAA CGTGACACTC CGATCCTCAT 500 A-T-A--CTA TCCTGGTACC GGAACGTGGC ACCCGATCCC CTAATCTCAC TACTTTCGTT 34906 | | | ||| |||||||||| | |||||||| |||||||||| ||||| ||| | | ATTCATTCTA TCCTGGTACC GAAACGTGGC ACCCGATCCC CTAAT-TCA- TCAAGCC... 555 CATCAAGCCT TCTTTTATAC CAAGACATCA TCATTAACAA AGTAGATTAG GGCTTTTCAA 34846 .......... .......... .......... .......... .......... .......... 555 GATTTAGGAT TCAATAGCTT CATCATGCTT ATTCATCACA ATTATATAAT CGCATCATGT 34786 .......... .......... .......... .......... .......... .......... 555 AAGCATACAA TTAATCACAT AGAAGGGTTT ACAACACTAC CCAATACATA TCATTCGCTA 34726 .......... .......... .......... .......... .......... .......... 555 TTAAGAGTTT ACTACGAATA GTATAAAAAC CATAACCTAC CTCCACCGAA GATTAGTGAT 34666 .......... .......... .......... .......... .......... .......... 555 CAAGCAAGCA AATTCCCCAA AGCTTTGTGT TTTCCTCTTC TCGTTCGATC CTCTCTCTCT 34606 .......... .......... .......... .......... .......... .......... 555 CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT TTACCCTAAT TAGCATATAA 34546 .......... .......... .......... .......... .......... .......... 555 TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT CAAGGTTACC TCTTTTAACC 34486 .......... .......... .......... .......... .......... .......... 555 CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT ATAATTAAAA CAGGAATAGT 34426 .......... .......... .......... .......... .......... .......... 555 CAAAAACTTC CTTTAAAACA TTAAAGAAAT CCGACTCAGC CTGGGATTAC GCAGCCTGTG 34366 .......... .......... .......... .......... .......... .......... 555 ACGGCCTGTC ATGCCTGCGA CGGTCCGTCC TGCTGCTCCG TCACAGAGTT CAGAGACTCA 34306 .......... .......... .......... .......... .......... .......... 555 ATTCCTTTAA AGAGTTTGTG ACGGTCCGTC ACGCCTGTGA CGGTCCGTCC TGCCTGTGAC 34246 .......... .......... .......... .......... .......... .......... 555 GGTCCATCCT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTCAGTACC CATTTTTCAG 34186 .......... .......... .......... .......... .......... .......... 555 AATTTTAAAG TGTTTTGAAA CGAGACCCCC TCGACGGTCC GTCGTGCCCA TGACGGTCCG 34126 .......... .......... .......... .......... .......... .......... 555 TCGTGGGATC CGTCGTCTCA GCCAGTTTTC CAGAAATAAC ATCTCTTGCT CAAAACGACT 34066 .......... .......... .......... .......... .......... .......... 555 AAACAGGTCG TTACAATAGA TACCAATTTA CCCATCGTTC GTCCTCGAAC GATCATAAGA 34006 .......... .......... .......... .......... .......... .......... 555 AGAAAAACAA GGGTGAAAAG AAGTACCTGA ATCTGTAAAC AGGTGTGGGT ATCTTTCTTG 33946 .......... .......... .......... .......... .......... .......... 555 CATATCAGCC TCTTTCTTCC AAGTGGCTTC TTCAACGGGT CGATTCTTCC ATTGAACTTT 33886 .......... .......... .......... .......... .......... .......... 555 GATGGATGCA ATCTCCCTTG ACCTCAGCTT GCGAACTTCT CTATCTAAAA TGGCAACAGG 33826 .......... .......... .......... .......... .......... .......... 555 CTCCTCCTCA TAAGACAAAT TTTCATCAAG CAGAACTGAA TCCCAACGAA TGATGTAGTT 33766 .......... .......... .......... .......... .......... .......... 555 TCCATCCCTA TGGTATCTTT TCAACATAGA CACGTGAAAT ACCGGATGCA CTCCGGACAG 33706 .......... .......... .......... .......... .......... .......... 555 CCCTGGAGGC AAGGCTAACT CATAAGCCAC CTCCCCTACT CGCTTAAGTA CTTCAAAGGG 33646 .......... .......... .......... .......... .......... .......... 555 ACCAATATAC CTTGGGCTTA ATTTACCTCT TTTACCAAAA CGCATCACCC CTTTCATAGG 33586 ||| | ||| || |||||| | | |||| .......... .......... ......TTCT TCTACACTAA GGCATCATCA TTCTCAT-T. 587 TGAAACCTTC AGCAAGACTT GTTCACCCTC CATGAACTCC AAGTCTCTAA CCTTTCGATC 33526 .......... .......... .......... .......... .......... .......... 587 TGCATATTCC TTTTGCCTAC TTTGCGCCGC TAACAGCTTT TCTTGAATAG ATTTCACTTT 33466 || | | ||| .......... .......... .......... .......... .......... ATAT-AATTT 596 ATCTAACGAT TCTCTCA 33449 ||| || | ||||||| ATC-AAGCCT TCTCTCA 612 hqPGS_C04HBa0077O05.1-_SGN-E349977- (35485 35188,35153 34909,33619 33587,33475 33449) ******************************************************************************** EST sequence 241 +strand 542 n (File: SGN-E353207+) 1 TCGGCATGTA CTGTTTTCCA AAACTTAGAA GTAAATTGCG TACCTCTATC TGATATGATG 61 GAGAGTGGAA CTCCGTGCAA TCGAACAATT TCTAAGATGT AAAGTTTGGC TAACTTCTCT 121 GCATTGTAAG TCACCTTAAC CGAAATAGAG TGAGCAGACT TAGTTAATCT GTCAACAATC 181 ACCCAAATAG AGTCATACCT ACCCATCGTC TTTGGATGAC TAACCACGAA GTCCATTGCA 241 ATTCTCTCCC ACTTCCATTC AGGAATGGGC ATTCTCTGAA GTGTCCCTCC AGGCCTCTGG 301 TGTTCATACT TTACTTGCTG ACAATTCGGG CATTGAGCAA CAAAATTAAC AATGTCACGC 361 TTCATCCTAC TCCACCAAAA ATGTTGCTTT AGGTCACGAT ACATCTTGTT TGCACCAGGA 421 TGTATAGAGT ACTTCGAACT ATGAGCCTAT ATAAGAATAG TGTGAATCAA ATCATCGACG 481 CGGGGTACAC ATACTCCTTC CCTTATTCTC AAAACACCTT CCTCATCGAT TTTTGCTTCT 541 TT Predicted gene structure (within gDNA segment 33887 to 30997): Exon 1 33170 32633 ( 538 n); cDNA 1 542 ( 542 n); score: 0.873 MATCH C04HBa0077O05.1- SGN-E353207+ 0.873 538 0.993 C PGS_C04HBa0077O05.1-_SGN-E353207+ (33170 32633) Alignment (genomic DNA sequence = upper lines): TCCGCATGCA ATATTTTCCA AAACTTAGAA GTAAACATCG TTCCTCTATC TGATATGATG 33111 || ||||| | | ||||||| |||||||||| ||||| || | |||||||| |||||||||| TCGGCATGTA CTGTTTTCCA AAACTTAGAA GTAAATTGCG TACCTCTATC TGATATGATG 60 GAGAGTGGAA CCCCATGCAA TCGAACAATT TCTGAGATGT AAATTTTGGC TAACTTCTCT 33051 |||||||||| | || ||||| |||||||||| ||| |||||| ||| |||||| |||||||||| GAGAGTGGAA CTCCGTGCAA TCGAACAATT TCTAAGATGT AAAGTTTGGC TAACTTCTCT 120 GCATTATAAG TCACCTTGAC CGGAATGAAA TGAACAGACT TAGTTAATCT GTCCACAATT 32991 ||||| |||| ||||||| || || ||| | ||| |||||| |||||||||| ||| ||||| GCATTGTAAG TCACCTTAAC CGAAATAGAG TGAGCAGACT TAGTTAATCT GTCAACAATC 180 ACCCAAATAG AGTCAAACTT CCCCAATGTC TTTGGAAGAC CAACCACGAA GTCCATTGCA 32931 |||||||||| ||||| || | |||| ||| |||||| ||| ||||||||| |||||||||| ACCCAAATAG AGTCATACCT ACCCATCGTC TTTGGATGAC TAACCACGAA GTCCATTGCA 240 ATTCTCTCCC ACTTTCATTC AGGAATGGGC ATTCTCTGAA GTGTTCCTCC GGGCCTCTAG 32871 |||||||||| |||| ||||| |||||||||| |||||||||| |||| ||||| ||||||| | ATTCTCTCCC ACTTCCATTC AGGAATGGGC ATTCTCTGAA GTGTCCCTCC AGGCCTCTGG 300 TG----TACT TTACTTGCTG ACAATTTGGA CATTTGGCAA CAAAATCCAC AATGTCGCGC 32815 || |||| |||||||||| |||||| || |||| |||| |||||| || |||||| ||| TGTTCATACT TTACTTGCTG ACAATTCGGG CATTGAGCAA CAAAATTAAC AATGTCACGC 360 TTCATCCTAC TCCACCAAAA GTGTTGCTTT AGGTCACGAT ACATCTTGGT TGCACCAGGA 32755 |||||||||| |||||||||| ||||||||| |||||||||| |||||||| | |||||||||| TTCATCCTAC TCCACCAAAA ATGTTGCTTT AGGTCACGAT ACATCTTGTT TGCACCAGGA 420 TGTATAGAAT ACCTTGAACT ATGAGCCTCT GTCAGAATAG TGTTGATCAG ATCATCGAAG 32695 |||||||| | || | ||||| |||||||| | | ||||||| ||| |||| |||||||| | TGTATAGAGT ACTTCGAACT ATGAGCCTAT ATAAGAATAG TGTGAATCAA ATCATCGACG 480 CGGGGTACAC ATAC-CATTC CCTTGATTCT CAAAACACCT TTCTCATCGA TTTGTGCTTC 32636 |||||||||| |||| | ||| |||| ||||| |||||||||| | |||||||| ||| |||||| CGGGGTACAC ATACTCCTTC CCTT-ATTCT CAAAACACCT TCCTCATCGA TTTTTGCTTC 539 CTT 32633 || TTT 542 hqPGS_C04HBa0077O05.1-_SGN-E353207+ (33170 32633) ******************************************************************************** EST sequence 103 -strand 763 n (File: SGN-E354383-) 1 AGAGAGTCGA TTTTCATATC CAAATTCAGA AATTCTAAGT ATGCTGAAAC GATGCACCTT 61 CGACGGGCCG TCGTGCCTGT GACGGTCCGT CGCAGTGCCC GTGGTCTTGG CCAGTTTTTC 121 CAGAATTAAA ATCTGCTGCT CAAAACGACT AAACAGGTCG TTACAATAGA TACCAATTTA 181 CCCATCGTTC GTCCCCGAAC GATCAAATGA AGAAAAACAA TGGCGAAAAG GAGTACCTGA 241 ATCTGTAAAC AGATGTGGGT ATTTTTCTTG CATATCTGCC TCCTTCTCCC AAGTAGCTTC 301 TTCAACCGGT CGATTCTTCC ATTGAACTTT GATGGATGCA ATTTCTCTCG ACCTCAACTT 361 GCGAACCTCT CTATCTAAAA TAGCAACTGG TTCCTCCTCA TAAGTCCAAT TCTCACCAAG 421 CGAAACTGAA TCCCAACGGA TGATGTAGTT TCCATCTCCA TGGTATCTTT TCAACATGGA 481 TACATGAAAT ACCGGATGTA CTCCGGACAG CCCTGGAGGT AAGGCTAATT CATAAGCCAC 541 CTCCCCTACT CGCTTTAGTA CCTCAAATGG TCCAATATAC CTTGGACTTA ACTTACCTCT 601 TTTACGAAAC CGCATCACCC CTTTCATTGG CGAGACTTTC AACAAGACTT GTTCGCCCTC 661 CATGAACTCT AAGTCTCTAA CCTTTCGATC TGCATATTCT TTTTGTCTAC TTTGCGCCGC 721 TAGAAGCTTT TCTTGAATAG ACTTCACTTT CTCCATCGAA TCT Predicted gene structure (within gDNA segment 36049 to 32655): Exon 1 34215 33453 ( 763 n); cDNA 1 763 ( 763 n); score: 0.876 MATCH C04HBa0077O05.1- SGN-E354383- 0.876 763 1.000 C PGS_C04HBa0077O05.1-_SGN-E354383- (34215 33453) Alignment (genomic DNA sequence = upper lines): AGAGAGTCGA TTTCAGTACC CATTTTTCAG AATTTTAAAG TGTTTTGAAA CGAGACCCCC 34156 |||||||||| ||| || | || ||||| || || ||| | | ||||| ||| | || AGAGAGTCGA TTTTCATATC CA-AATTCAG AAATTCTAAG TATGCTGAAA CGATGCACCT 59 TCGACGGTCC GTCGTGCCCA TGACGGTCCG TCGTGGGATC CGTCGTCTCA GCCAG-TTTT 34097 ||||||| || |||||||| |||||||||| ||| | | ||| |||| ||||| |||| TCGACGGGCC GTCGTGCCTG TGACGGTCCG TCGCAGTGCC CGTGGTCTTG GCCAGTTTTT 119 CCAGAAATAA CATCTCTTGC TCAAAACGAC TAAACAGGTC GTTACAATAG ATACCAATTT 34037 |||||| ||| |||| ||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGAATTAA AATCTGCTGC TCAAAACGAC TAAACAGGTC GTTACAATAG ATACCAATTT 179 ACCCATCGTT CGTCCTCGAA CGATCATAAG AAGAAAAACA AGGGTGAAAA GAAGTACCTG 33977 |||||||||| ||||| |||| |||||| | | |||||||||| | || ||||| | |||||||| ACCCATCGTT CGTCCCCGAA CGATCAAATG AAGAAAAACA ATGGCGAAAA GGAGTACCTG 239 AATCTGTAAA CAGGTGTGGG TATCTTTCTT GCATATCAGC CTCTTTCTTC CAAGTGGCTT 33917 |||||||||| ||| |||||| ||| |||||| ||||||| || ||| |||| | ||||| |||| AATCTGTAAA CAGATGTGGG TATTTTTCTT GCATATCTGC CTCCTTCTCC CAAGTAGCTT 299 CTTCAACGGG TCGATTCTTC CATTGAACTT TGATGGATGC AATCTCCCTT GACCTCAGCT 33857 ||||||| || |||||||||| |||||||||| |||||||||| ||| || || ||||||| || CTTCAACCGG TCGATTCTTC CATTGAACTT TGATGGATGC AATTTCTCTC GACCTCAACT 359 TGCGAACTTC TCTATCTAAA ATGGCAACAG GCTCCTCCTC ATAAGACAAA TTTTCATCAA 33797 ||||||| || |||||||||| || ||||| | | |||||||| ||||| | || || ||| ||| TGCGAACCTC TCTATCTAAA ATAGCAACTG GTTCCTCCTC ATAAGTCCAA TTCTCACCAA 419 GCAGAACTGA ATCCCAACGA ATGATGTAGT TTCCATCCCT ATGGTATCTT TTCAACATAG 33737 || |||||| ||||||||| |||||||||| ||||||| | |||||||||| |||||||| | GCGAAACTGA ATCCCAACGG ATGATGTAGT TTCCATCTCC ATGGTATCTT TTCAACATGG 479 ACACGTGAAA TACCGGATGC ACTCCGGACA GCCCTGGAGG CAAGGCTAAC TCATAAGCCA 33677 | || ||||| ||||||||| |||||||||| |||||||||| |||||||| |||||||||| ATACATGAAA TACCGGATGT ACTCCGGACA GCCCTGGAGG TAAGGCTAAT TCATAAGCCA 539 CCTCCCCTAC TCGCTTAAGT ACTTCAAAGG GACCAATATA CCTTGGGCTT AATTTACCTC 33617 |||||||||| |||||| ||| || ||||| | | |||||||| |||||| ||| || ||||||| CCTCCCCTAC TCGCTTTAGT ACCTCAAATG GTCCAATATA CCTTGGACTT AACTTACCTC 599 TTTTACCAAA ACGCATCACC CCTTTCATAG GTGAAACCTT CAGCAAGACT TGTTCACCCT 33557 |||||| ||| ||||||||| |||||||| | | || || || || ||||||| ||||| |||| TTTTACGAAA CCGCATCACC CCTTTCATTG GCGAGACTTT CAACAAGACT TGTTCGCCCT 659 CCATGAACTC CAAGTCTCTA ACCTTTCGAT CTGCATATTC CTTTTGCCTA CTTTGCGCCG 33497 |||||||||| ||||||||| |||||||||| |||||||||| ||||| ||| |||||||||| CCATGAACTC TAAGTCTCTA ACCTTTCGAT CTGCATATTC TTTTTGTCTA CTTTGCGCCG 719 CTAACAGCTT TTCTTGAATA GATTTCACTT TATCTAACGA TTCT 33453 ||| ||||| |||||||||| || ||||||| | || | ||| ||| CTAGAAGCTT TTCTTGAATA GACTTCACTT TCTCCATCGA ATCT 763 hqPGS_C04HBa0077O05.1-_SGN-E354383- (34215 33453) ******************************************************************************** EST sequence 50 -strand 542 n (File: SGN-E252199-) 1 CGACCCAGCC TGGGATTACG CAGTCTGTGA CGGTCCGTCC TGCACGTCCG TCACAGAGTT 61 CAGAGACTAG ATTTTTACCA AGGGTCTGTG ACGGCCCATC ACGCCTGTGA CGGTCCGTCC 121 TGCCATTCCG TCACGAAGTT CAGAGAGTCG ATTTCAGTAC CCAAATTTCA GAATTCTAAG 181 TGTTTTGGAA CGAGACCCCC TCGACGGTCC GTCGTGGGAT CCGTCGTCTC AGTCAGTTTT 241 TCCAGAAATA AAATCTGTTA CTCAAAACGA CTAAACAGGT CGTTACAATA GATACCAATT 301 TACCCATCGT TCGTCCCCGA ACGATCACAA GAAGAAAAAC AAGGGCGAAA AGGAGTACCT 361 GAATCTGTAA ACAGGTATGG GTATCTTTCT CGCATATCAA CTTCCTTCTC CCAAGTGGAT 421 TCTTCAACTG GTCGATTCTT CCATTGAACT TTGATAGATG CAATCTCCCT TGACCTCAAT 481 TTGCGGACTT CTCTATCTAA AATGGCAACA GGCTCCTCCT CATAAGACAA ATTCTCATCA 541 AG Predicted gene structure (within gDNA segment 36154 to 33115): Exon 1 34271 33796 ( 476 n); cDNA 86 542 ( 457 n); score: 0.889 MATCH C04HBa0077O05.1- SGN-E252199- 0.889 476 0.878 C PGS_C04HBa0077O05.1-_SGN-E252199- (34271 33796) Alignment (genomic DNA sequence = upper lines): CTGTGACGGT CCGTCCTGCC TGTGACGGTC CATCCTGCCA TTCCGTTACG AAGTTCAGAG 34212 ||||||||| || || ||| |||||||||| | |||||||| |||||| ||| |||||||||| CTGTGACGGC CCATCACGCC TGTGACGGTC CGTCCTGCCA TTCCGTCACG AAGTTCAGAG 145 AGTCGATTTC AGTACCCATT TTTCAGAATT TTAAAGTGTT TTGAAACGAG ACCCCCTCGA 34152 |||||||||| |||||||| |||||||||| | ||||||| ||| |||||| |||||||||| AGTCGATTTC AGTACCCAAA TTTCAGAATT CT-AAGTGTT TTGGAACGAG ACCCCCTCGA 204 CGGTCCGTCG TGCCCATGAC GGTCCGTCGT GGGATCCGTC GTCTCAGCCA GTTTTCCAGA 34092 |||||||||| || | | |||||| | | | || |||| ||||||||| CGGTCCGTCG TG-----G-- GATCCGTC-- --G-T-C-TC -AGTCAG--- TTTTTCCAGA 246 AATAACATCT CTTGCTCAAA ACGACTAAAC AGGTCGTTAC AATAGATACC AATTTACCCA 34032 ||||| |||| || |||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAAAATCT GTTACTCAAA ACGACTAAAC AGGTCGTTAC AATAGATACC AATTTACCCA 306 TCGTTCGTCC TCGAACGATC ATAAGAAGAA AAACAAGGGT GAAAAGAAGT ACCTGAATCT 33972 |||||||||| ||||||||| | |||||||| ||||||||| |||||| ||| |||||||||| TCGTTCGTCC CCGAACGATC ACAAGAAGAA AAACAAGGGC GAAAAGGAGT ACCTGAATCT 366 GTAAACAGGT GTGGGTATCT TTCTTGCATA TCAGCCTCTT TCTTCCAAGT GGCTTCTTCA 33912 |||||||||| ||||||||| |||| ||||| ||| | || | ||| |||||| || ||||||| GTAAACAGGT ATGGGTATCT TTCTCGCATA TCAACTTCCT TCTCCCAAGT GGATTCTTCA 426 ACGGGTCGAT TCTTCCATTG AACTTTGATG GATGCAATCT CCCTTGACCT CAGCTTGCGA 33852 || ||||||| |||||||||| ||||||||| |||||||||| |||||||||| || ||||| ACTGGTCGAT TCTTCCATTG AACTTTGATA GATGCAATCT CCCTTGACCT CAATTTGCGG 486 ACTTCTCTAT CTAAAATGGC AACAGGCTCC TCCTCATAAG ACAAATTTTC ATCAAG 33796 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||| ACTTCTCTAT CTAAAATGGC AACAGGCTCC TCCTCATAAG ACAAATTCTC ATCAAG 542 hqPGS_C04HBa0077O05.1-_SGN-E252199- (34271 33796) ******************************************************************************** EST sequence 76 -strand 515 n (File: SGN-E242359-) 1 AGTATGTATT AAGCAATATC ATAAAATTAA CTAATATCCT TAGCATGCAG CATTTGCAAT 61 TACCATAACC CTTGGTTGCA TCACCAAGCA CATCAATGAG GACTCACACC TCCTCATCAT 121 ACTTATTTGG GAATTTAGTT CATTGGATTG CATATATTAA CATATTTCAA GATTCATCAT 181 ATTTATTCCC CTCGTGTCCT TACGTGACAC TCCACTCCTC AATATACTAT CCTGGCACCG 241 GAACGTGGCA CCCGATCCAT ATTCTATCCT GGTGTCAGAA CGTGACACCC GATCCATATT 301 CTATCCTGGT GTCGGAACGT GACACCCGAT CCATATTCTA TCCTGGTACC GGAACGTGGC 361 ACCCGATCCA TATTCTATCC TGGTGTCGGA ACGTGACACC CGATCCATAT TCTATCCTGG 421 TACCGGAACG TGGCACCCGA TCCCCTAATC TCACCACTTT CGTTCATCAA GCCTTCTTTT 481 ATACCAAGGC ATCATTATTA ACAAAGTAGA TTAGG Predicted gene structure (within gDNA segment 38799 to 33094): Exon 1 35451 35264 ( 188 n); cDNA 1 188 ( 188 n); score: 0.814 Intron 1 35263 35187 ( 77 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0.79) Exon 2 35186 34855 ( 332 n); cDNA 189 515 ( 327 n); score: 0.917 MATCH C04HBa0077O05.1- SGN-E242359- 0.880 520 1.010 C PGS_C04HBa0077O05.1-_SGN-E242359- (35451 35264,35186 34855) Alignment (genomic DNA sequence = upper lines): AGTATATATC AGATAATATC ATAAAATCAA CTACAGTACT TAACATGCAA CATTTACAAT 35392 ||||| ||| | |||||| ||||||| || ||| | || || |||||| ||||| |||| AGTATGTATT AAGCAATATC ATAAAATTAA CTAATATCCT TAGCATGCAG CATTTGCAAT 60 TACCATAACC CTTGGTCATA ACACCAATCT CATCAATGAG GACTCACGCC TCCCCATCAT 35332 |||||||||| |||||| | |||||| | |||||||||| ||||||| || ||| |||||| TACCATAACC CTTGGTTGCA TCACCAAGCA CATCAATGAG GACTCACACC TCCTCATCAT 120 ACTCATTTGA GAATTAGGTT CATTAAATTA AGTATATTAA CATATTTCAA GATTCATTCT 35272 ||| ||||| ||||| ||| |||| ||| |||||||| |||||||||| ||||||| | ACTTATTTGG GAATTTAGTT CATTGGATTG CATATATTAA CATATTTCAA GATTCATCAT 180 CTTTACTAAT CCTGGTGCCG GAACGTGACA CTCCGATCCT CATATACTAT CCTGGTACCG 35212 |||| | ATTTATTC.. .......... .......... .......... .......... .......... 188 GACGTGGCAC CCGATCCATA TACTATCCTG GTGTCGGAAC GTGACACTCC GATCCTC-AT 35153 ||| ||||| || |||||||||| ||||| || .......... .......... .....CCCTC GTGTCCTTAC GTGACACTCC ACTCCTCAAT 223 ATACTATCCT GGTACCGGAA CGTGGCACCC GATCCATATA CTATCCTGGT GTCGGAACGT 35093 |||||||||| || ||||||| |||||||||| ||||||||| |||||||||| ||| |||||| ATACTATCCT GGCACCGGAA CGTGGCACCC GATCCATATT CTATCCTGGT GTCAGAACGT 283 GACACCCGAT CCATATACTA TCCTGGTGTC GGAACGTGAC ACTCCGATCC TCACATACTA 35033 |||||||||| |||||| ||| |||||||||| |||||||||| || ||||| | || || ||| GACACCCGAT CCATATTCTA TCCTGGTGTC GGAACGTGAC AC-CCGAT-C -CATATTCTA 340 TCCTGGTACC GGAACGTGGC ACCCGATCCA TATACTATCC TGGTGTCGAA ACGTGACACT 34973 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||| | ||||||||| TCCTGGTACC GGAACGTGGC ACCCGATCCA TATTCTATCC TGGTGTCGGA ACGTGACAC- 399 CCGATCCTCA TATACTATCC TGGTACCGGA ACGTGGCACC CGATCCCCTA ATCTCACTAC 34913 ||||| | || ||| |||||| |||||||||| |||||||||| |||||||||| ||||||| || CCGAT-C-CA TATTCTATCC TGGTACCGGA ACGTGGCACC CGATCCCCTA ATCTCACCAC 457 TTTCGTTCAT CAAGCCTTCT TTTATACCAA GACATCATCA TTAACAAAGT AGATTAGG 34855 |||||||||| |||||||||| |||||||||| | |||||| | |||||||||| |||||||| TTTCGTTCAT CAAGCCTTCT TTTATACCAA GGCATCATTA TTAACAAAGT AGATTAGG 515 hqPGS_C04HBa0077O05.1-_SGN-E242359- (35451 35264,35186 34855) ******************************************************************************** EST sequence 14 -strand 679 n (File: SGN-E550127-) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTCCT TTTCTTTTTC TTATCAAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTGCACAA CCATGAATTA ATGAAAAAAT TATGACATAA 661 AATATAAAAA ATTACTCAT Predicted gene structure (within gDNA segment 35730 to 30853): Exon 1 34625 34051 ( 575 n); cDNA 2 556 ( 555 n); score: 0.847 MATCH C04HBa0077O05.1- SGN-E550127- 0.847 575 0.847 C PGS_C04HBa0077O05.1-_SGN-E550127- (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||| ||| | |||||| | || |||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTCCTT TTCTTTTTCT T-ATCAAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 399 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 457 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 517 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||||||| |||||||||| ||||||||| TAAAATCTGC TACTCAAAAC GACTAAACAG GTCGTTACA 556 hqPGS_C04HBa0077O05.1-_SGN-E550127- (34625 34051) ******************************************************************************** EST sequence 17 -strand 673 n (File: SGN-E550140-) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTACTCN 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATGTTATCAA CCATGAATTA ACAAAAAATT AGACCAAAAA 661 TATAAAAAAT TAC Predicted gene structure (within gDNA segment 35730 to 30913): Exon 1 34625 34051 ( 575 n); cDNA 2 556 ( 555 n); score: 0.846 MATCH C04HBa0077O05.1- SGN-E550140- 0.846 575 0.854 C PGS_C04HBa0077O05.1-_SGN-E550140- (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||| ||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAA-TTACT 118 C-AAGGTTAC CTCTTTTAAC CCCCAAGTAA TTAGACTTAT TAACATTAAC CCACTAACTT 34447 | |||||||| |||||||||| ||||| |||| |||||||||| |||||| ||| |||||||||| CNAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTAAA ACAGGAATAG TCAAAAACTT CCTTTAAAAC AT-TAAAGAA ATCCGACTCA 34388 |||||||||| |||||||| || ||||| | || ||||||| | ||||||| ||||||| || TATAATTAAA GTAGGAATAG TCCAAAACGT CCCTTAAAAC GTGTAAAGAA ATCCGACCCA 238 GCCTGGGATT ACGCAGCCTG TGACGGCCTG TCATGCCTGC GACGGTCCGT CCTGCTGCTC 34328 | |||||||| ||||| |||| ||| |||| | || ||||||| |||||||||| ||||| | | GACTGGGATT ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGGT- 297 CGTCACAGAG TTCAGAGACT CAA-TTCCTT TAAAGAGTTT GTGACGGTCC GTCACGCCTG 34269 |||| || | |||||||||| ||| |||| ||||||| | |||||||||| |||||||| | CGTCGCAAGG TTCAGAGACT CAATTTCCAC CAAAGAGTCT GTGACGGTCC GTCACGCCCG 357 TGACGGTCCG TCCTGCCTGT GACGGTCCAT CCTGCCATTC CGTTACGAAG TTCAGAGAGT 34209 |||| | | | || || | | |||||||| |||||||||| |||||||||| TGAC-G---G ---T-CC-GT --C-G----- --TGCCATTC CGTTACGAAG TTCAGAGAGT 398 CGA-TTTCAG TACCCATTTT TCAGAATTTT AAAGTGTTTT GAAACGAGAC CCCCTCGACG 34150 ||| ||| || |||||| || ||||||||| ||||||||| ||||||||| | |||||||| CGATTTTTAG TACCCA-ATT TCAGAATTTC TAAGTGTTTT GAAACGAGA- CTCCTCGACG 456 GTCCGTCGTG CCCATGACGG TCCGTCGTGG GATCCGTCGT CTCAGCCAG- TTTTCCAGAA 34091 |||| ||||| | |||||||| |||||||||| | |||||||| |||| || | ||||||| || GTCCATCGTG CTCATGACGG TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA 516 ATAACATCTC TTGCTCAAAA CGACTAAACA GGTCGTTACA 34051 |||| |||| | ||||||| |||||||||| |||||||||| ATAAAATCTG CTACTCAAAA CGACTAAACA GGTCGTTACA 556 hqPGS_C04HBa0077O05.1-_SGN-E550140- (34625 34051) ******************************************************************************** EST sequence 28 -strand 681 n (File: SGN-E389553-) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCGTTCC TACTTAAATA TTATTATTAT TTTACGATTT 601 ATAACACTAT TAGAAACAAA GATTTTCTCA ACCATGAATT AATGAAAAAA TTATGGAATA 661 AAATATAAAA AATTACTCAT T Predicted gene structure (within gDNA segment 35730 to 30833): Exon 1 34625 34051 ( 575 n); cDNA 2 556 ( 555 n); score: 0.852 MATCH C04HBa0077O05.1- SGN-E389553- 0.852 575 0.844 C PGS_C04HBa0077O05.1-_SGN-E389553- (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 399 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 457 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 517 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||||||| |||||||||| ||||||||| TAAAATCTGC TACTCAAAAC GACTAAACAG GTCGTTACA 556 hqPGS_C04HBa0077O05.1-_SGN-E389553- (34625 34051) ******************************************************************************** EST sequence 246 +strand 711 n (File: SGN-E396039+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AAAAACAAAG ATTTTCTCCA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AAATAAAAAA AATTTACTCA TTTTTTCTTG GAGCTAATTC AAAAAAAAAA A Predicted gene structure (within gDNA segment 35720 to 30523): Exon 1 34625 34051 ( 575 n); cDNA 2 556 ( 555 n); score: 0.852 PPA cDNA 661 672 MATCH C04HBa0077O05.1- SGN-E396039+ 0.852 575 0.809 C PGS_C04HBa0077O05.1-_SGN-E396039+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 399 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 457 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 517 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||||||| |||||||||| ||||||||| TAAAATCTGC TACTCAAAAC GACTAAACAG GTCGTTACA 556 hqPGS_C04HBa0077O05.1-_SGN-E396039+ (34625 34051) ******************************************************************************** EST sequence 248 +strand 618 n (File: SGN-E396054+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAA Predicted gene structure (within gDNA segment 35720 to 31453): Exon 1 34625 34051 ( 575 n); cDNA 2 556 ( 555 n); score: 0.852 MATCH C04HBa0077O05.1- SGN-E396054+ 0.852 575 0.930 C PGS_C04HBa0077O05.1-_SGN-E396054+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 399 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 457 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 517 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||||||| |||||||||| ||||||||| TAAAATCTGC TACTCAAAAC GACTAAACAG GTCGTTACA 556 hqPGS_C04HBa0077O05.1-_SGN-E396054+ (34625 34051) ******************************************************************************** EST sequence 250 +strand 711 n (File: SGN-E396056+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAA ATTTTCTCAC CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATAATAAAA ATTTACTCAT TTTTTCTTTG AGCTAATTCA TAAAAAAAAA A Predicted gene structure (within gDNA segment 35720 to 30523): Exon 1 34625 34051 ( 575 n); cDNA 2 556 ( 555 n); score: 0.852 PPA cDNA 700 711 MATCH C04HBa0077O05.1- SGN-E396056+ 0.852 575 0.809 C PGS_C04HBa0077O05.1-_SGN-E396056+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 399 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 457 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 517 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||||||| |||||||||| ||||||||| TAAAATCTGC TACTCAAAAC GACTAAACAG GTCGTTACA 556 hqPGS_C04HBa0077O05.1-_SGN-E396056+ (34625 34051) ******************************************************************************** EST sequence 252 +strand 610 n (File: SGN-E396058+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTGTTT CCAAAAATAA AATCTGCTAC TCACAACGAC 541 TAAACAGGTC GTTACATTTA GGTTCTTCAT AGTTAACTAT TATTATTATT TTACGATTTA 601 TAACACTATT Predicted gene structure (within gDNA segment 35720 to 31533): Exon 1 34625 34051 ( 575 n); cDNA 2 556 ( 555 n); score: 0.850 MATCH C04HBa0077O05.1- SGN-E396058+ 0.850 575 0.943 C PGS_C04HBa0077O05.1-_SGN-E396058+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 399 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 457 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAGT- TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || || |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTG TTTCCAAAAA 517 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||| ||| |||||||||| ||||||||| TAAAATCTGC TACTCACAAC GACTAAACAG GTCGTTACA 556 hqPGS_C04HBa0077O05.1-_SGN-E396058+ (34625 34051) ******************************************************************************** EST sequence 268 +strand 690 n (File: SGN-E377133+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT ATGCCATAAA 661 ATATAAAAAA TTTACTCATT TTTCATTGAG Predicted gene structure (within gDNA segment 35710 to 30723): Exon 1 34625 34051 ( 575 n); cDNA 1 555 ( 555 n); score: 0.852 MATCH C04HBa0077O05.1- SGN-E377133+ 0.852 575 0.833 C PGS_C04HBa0077O05.1-_SGN-E377133+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 59 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 178 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 238 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 297 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 357 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 398 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 456 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 516 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||||||| |||||||||| ||||||||| TAAAATCTGC TACTCAAAAC GACTAAACAG GTCGTTACA 555 hqPGS_C04HBa0077O05.1-_SGN-E377133+ (34625 34051) ******************************************************************************** EST sequence 164 +strand 729 n (File: SGN-E550212+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAAAACTCG 721 GGGGGGGGC Predicted gene structure (within gDNA segment 35720 to 30343): Exon 1 34625 34051 ( 575 n); cDNA 2 556 ( 555 n); score: 0.852 PPA cDNA 699 716 MATCH C04HBa0077O05.1- SGN-E550212+ 0.852 575 0.789 C PGS_C04HBa0077O05.1-_SGN-E550212+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 399 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 457 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 517 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||||||| |||||||||| ||||||||| TAAAATCTGC TACTCAAAAC GACTAAACAG GTCGTTACA 556 hqPGS_C04HBa0077O05.1-_SGN-E550212+ (34625 34051) ******************************************************************************** EST sequence 166 +strand 710 n (File: SGN-E550065+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATGA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTGATTCAT AAGAAAAAAA Predicted gene structure (within gDNA segment 35720 to 30533): Exon 1 34625 34051 ( 575 n); cDNA 2 556 ( 555 n); score: 0.852 MATCH C04HBa0077O05.1- SGN-E550065+ 0.852 575 0.810 C PGS_C04HBa0077O05.1-_SGN-E550065+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 399 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 457 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 517 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||||||| |||||||||| ||||||||| TAAAATCTGC TACTCAAAAC GACTAAACAG GTCGTTACA 556 hqPGS_C04HBa0077O05.1-_SGN-E550065+ (34625 34051) ******************************************************************************** EST sequence 170 +strand 732 n (File: SGN-E550201+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCNA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAAAAAACT 721 CGAGGGGGGG CC Predicted gene structure (within gDNA segment 35720 to 29713): Exon 1 34625 34051 ( 575 n); cDNA 2 556 ( 555 n); score: 0.852 PPA cDNA 699 718 MATCH C04HBa0077O05.1- SGN-E550201+ 0.852 575 0.786 C PGS_C04HBa0077O05.1-_SGN-E550201+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 399 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 457 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 517 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||||||| |||||||||| ||||||||| TAAAATCTGC TACTCAAAAC GACTAAACAG GTCGTTACA 556 hqPGS_C04HBa0077O05.1-_SGN-E550201+ (34625 34051) ******************************************************************************** EST sequence 172 +strand 709 n (File: SGN-E550207+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTNCA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAA Predicted gene structure (within gDNA segment 35720 to 30543): Exon 1 34625 34051 ( 575 n); cDNA 2 556 ( 555 n); score: 0.852 PPA cDNA 699 709 MATCH C04HBa0077O05.1- SGN-E550207+ 0.852 575 0.811 C PGS_C04HBa0077O05.1-_SGN-E550207+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 399 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 457 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 517 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||||||| |||||||||| ||||||||| TAAAATCTGC TACTCAAAAC GACTAAACAG GTCGTTACA 556 hqPGS_C04HBa0077O05.1-_SGN-E550207+ (34625 34051) ******************************************************************************** EST sequence 175 +strand 715 n (File: SGN-E550335+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAATCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTCNAC CATGAATTAA TGAAAAAATT ATGCCATAAA 661 ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 35710 to 30473): Exon 1 34625 34051 ( 575 n); cDNA 2 555 ( 554 n); score: 0.849 PPA cDNA 698 715 MATCH C04HBa0077O05.1- SGN-E550335+ 0.849 575 0.804 C PGS_C04HBa0077O05.1-_SGN-E550335+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||| ||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTC-AAC CCTCCTTCTT 59 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 178 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 238 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 297 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||| | || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAATCTG TGACGGTCCG TCACGCCCGT 357 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 398 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 456 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 516 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||||||| |||||||||| ||||||||| TAAAATCTGC TACTCAAAAC GACTAAACAG GTCGTTACA 555 hqPGS_C04HBa0077O05.1-_SGN-E550335+ (34625 34051) ******************************************************************************** EST sequence 192 +strand 714 n (File: SGN-E390013+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACNAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 35720 to 30493): Exon 1 34625 34051 ( 575 n); cDNA 2 556 ( 555 n); score: 0.852 PPA cDNA 699 714 MATCH C04HBa0077O05.1- SGN-E390013+ 0.852 575 0.805 C PGS_C04HBa0077O05.1-_SGN-E390013+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 399 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 457 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 517 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||||||| |||||||||| ||||||||| TAAAATCTGC TACTCAAAAC GACTAAACAG GTCGTTACA 556 hqPGS_C04HBa0077O05.1-_SGN-E390013+ (34625 34051) ******************************************************************************** EST sequence 194 +strand 720 n (File: SGN-E389834+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTA CGTCGACTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAGAACGAC 541 TAAACAGGAC GTTACATTTA TGATCGTCCT ACTTAAATAT CATTATTATT TTACGATTTA 601 TAACACTATT AGAAACGAAG ATTTTCTCGA CCATGAATTA ATGAAAAAAT ATGCCATGAA 661 ATATAAAAAT TTACTCGTTC TTCATTGAGC TATTCGTGAA AAAAAAAAAA AAATCGAGGG Predicted gene structure (within gDNA segment 35720 to 30433): Exon 1 34625 34051 ( 575 n); cDNA 2 556 ( 555 n); score: 0.845 PPA cDNA 699 714 MATCH C04HBa0077O05.1- SGN-E389834+ 0.845 575 0.799 C PGS_C04HBa0077O05.1-_SGN-E389834+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 399 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 457 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| | ||||| | ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTACGTCGAC TCAACCTGTT TTTCCAAAAA 517 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||| ||| |||||||||| | ||||||| TAAAATCTGC TACTCAGAAC GACTAAACAG GACGTTACA 556 hqPGS_C04HBa0077O05.1-_SGN-E389834+ (34625 34051) ******************************************************************************** EST sequence 198 +strand 717 n (File: SGN-E550484+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 35720 to 30463): Exon 1 34625 34051 ( 575 n); cDNA 2 556 ( 555 n); score: 0.852 PPA cDNA 699 717 MATCH C04HBa0077O05.1- SGN-E550484+ 0.852 575 0.802 C PGS_C04HBa0077O05.1-_SGN-E550484+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 399 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 457 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 517 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||||||| |||||||||| ||||||||| TAAAATCTGC TACTCAAAAC GACTAAACAG GTCGTTACA 556 hqPGS_C04HBa0077O05.1-_SGN-E550484+ (34625 34051) ******************************************************************************** EST sequence 200 +strand 713 n (File: SGN-E550211+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT ATGCCATAAA 661 ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 35710 to 30493): Exon 1 34625 34051 ( 575 n); cDNA 2 555 ( 554 n); score: 0.850 PPA cDNA 698 713 MATCH C04HBa0077O05.1- SGN-E550211+ 0.850 575 0.806 C PGS_C04HBa0077O05.1-_SGN-E550211+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||| ||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTC-AAC CCTCCTTCTT 59 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 178 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 238 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 297 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 357 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 398 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 456 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 516 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||||||| |||||||||| ||||||||| TAAAATCTGC TACTCAAAAC GACTAAACAG GTCGTTACA 555 hqPGS_C04HBa0077O05.1-_SGN-E550211+ (34625 34051) ******************************************************************************** EST sequence 202 +strand 713 n (File: SGN-E550464+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GNTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCTA CCATGAATTA ATGAAAAATT ATGCCATAAG 661 ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 35720 to 30503): Exon 1 34625 34051 ( 575 n); cDNA 2 556 ( 555 n); score: 0.850 PPA cDNA 698 713 MATCH C04HBa0077O05.1- SGN-E550464+ 0.850 575 0.806 C PGS_C04HBa0077O05.1-_SGN-E550464+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 399 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 457 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 517 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||||||| |||||||||| |||| |||| TAAAATCTGC TACTCAAAAC GACTAAACAG GTCGNTACA 556 hqPGS_C04HBa0077O05.1-_SGN-E550464+ (34625 34051) ******************************************************************************** EST sequence 207 +strand 713 n (File: SGN-E549941+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA TATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCGA CCNATGATTA ATGAAAAATT ATGCCATCAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 35720 to 30503): Exon 1 34625 34051 ( 575 n); cDNA 2 556 ( 555 n); score: 0.852 PPA cDNA 699 713 MATCH C04HBa0077O05.1- SGN-E549941+ 0.852 575 0.806 C PGS_C04HBa0077O05.1-_SGN-E549941+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 399 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 457 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 517 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||||||| |||||||||| ||||||||| TAATATCTGC TACTCAAAAC GACTAAACAG GTCGTTACA 556 hqPGS_C04HBa0077O05.1-_SGN-E549941+ (34625 34051) ******************************************************************************** EST sequence 210 +strand 714 n (File: SGN-E550025+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 35720 to 30493): Exon 1 34625 34051 ( 575 n); cDNA 2 556 ( 555 n); score: 0.852 PPA cDNA 699 714 MATCH C04HBa0077O05.1- SGN-E550025+ 0.852 575 0.805 C PGS_C04HBa0077O05.1-_SGN-E550025+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 399 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 457 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 517 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||||||| |||||||||| ||||||||| TAAAATCTGC TACTCAAAAC GACTAAACAG GTCGTTACA 556 hqPGS_C04HBa0077O05.1-_SGN-E550025+ (34625 34051) ******************************************************************************** EST sequence 212 +strand 558 n (File: SGN-E231589+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA TAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTT Predicted gene structure (within gDNA segment 35710 to 32043): Exon 1 34625 34051 ( 575 n); cDNA 1 555 ( 555 n); score: 0.850 MATCH C04HBa0077O05.1- SGN-E231589+ 0.850 575 1.030 C PGS_C04HBa0077O05.1-_SGN-E231589+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 59 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 178 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 238 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 297 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || ||| |||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCATAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 357 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 398 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 456 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 516 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | |||||||| |||||||||| ||||||||| TAAAATCTGC TACTCAAAAC GACTAAACAG GTCGTTACA 555 hqPGS_C04HBa0077O05.1-_SGN-E231589+ (34625 34051) ******************************************************************************** EST sequence 238 +strand 649 n (File: SGN-E374999+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CCAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTTCAC CCTGAATTAA TGAAAAAAT Predicted gene structure (within gDNA segment 35710 to 31133): Exon 1 34625 34051 ( 575 n); cDNA 1 555 ( 555 n); score: 0.850 MATCH C04HBa0077O05.1- SGN-E374999+ 0.850 575 0.886 C PGS_C04HBa0077O05.1-_SGN-E374999+ (34625 34051) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 59 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 178 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 238 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 297 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 357 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 398 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 456 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 516 TAACATCTCT TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 ||| |||| | ||| |||| |||||||||| ||||||||| TAAAATCTGC TACTCCAAAC GACTAAACAG GTCGTTACA 555 hqPGS_C04HBa0077O05.1-_SGN-E374999+ (34625 34051) ******************************************************************************** EST sequence 168 +strand 726 n (File: SGN-E550322+) 1 TCGCACCAGA TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC 61 CTCCTTCTTT TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT 121 AATTTACTCA AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA 181 CTAACTTTAT AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC 241 CGACCCAGAC TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT 301 GCAGGTCGTC GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA 361 CGCCCGTGAC GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC 421 CCAATTTCAG AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT 481 GACGGTCCGT CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT 541 CAAAACGACT AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT 601 TACGATTTAT AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT 661 ATGCCATAAA ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA 721 AAAAAC Predicted gene structure (within gDNA segment 35810 to 30463): Exon 1 34614 34051 ( 564 n); cDNA 22 565 ( 544 n); score: 0.860 PPA cDNA 708 725 MATCH C04HBa0077O05.1- SGN-E550322+ 0.860 564 0.777 C PGS_C04HBa0077O05.1-_SGN-E550322+ (34614 34051) Alignment (genomic DNA sequence = upper lines): TCTCTCTCTC TTTGTTCTTT CTATTTTCTT TATTCAAACC CTCTTTCTTT TACCCTAATT 34555 ||||||||| | |||||||| ||||||| ||||||||| ||| |||||| |||||||||| TCTCTCTCTT TCTGTTCTTT TCTTTTTCTT -ATTCAAACC CTCCTTCTTT TACCCTAATT 80 AGCATATAAT TAAGAATAAA AGATGGCAAT AATAACCCAC TAATTTACTC AAGGTTACCT 34495 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| AGCATATAAT TAAGAATAAA AGATGG-AAT AATAACCCAC TAATTTACTC AAGGTTACCT 139 CTTTTAACCC CCAAGTAATT AGACTTATTA ACATTAACCC ACTAACTTTA TAATTAAAAC 34435 |||||||||| ||| |||||| |||||||||| |||| ||||| |||||||||| |||||||| CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA TAATTAAAGT 199 AGGAATAGTC AAAAACTTCC TTTAAAACAT -TAAAGAAAT CCGACTCAGC CTGGGATTAC 34376 |||||||||| ||||| ||| ||||||| | ||||||||| ||||| ||| |||||||||| AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA CTGGGATTAC 259 GCAGCCTGTG ACGGCCTGTC ATGCCTGCGA CGGTCCGTCC TGCTGCTCCG TCACAGAGTT 34316 ||| |||||| | |||| ||| ||||||||| |||||||||| ||| | | || || || ||| GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGT-CG TCGCAAGGTT 318 CAGAGACTCA A-TTCCTTTA AAGAGTTTGT GACGGTCCGT CACGCCTGTG ACGGTCCGTC 34257 |||||||||| | |||| | |||||| ||| |||||||||| |||||| ||| || | | CAGAGACTCA ATTTCCACCA AAGAGTCTGT GACGGTCCGT CACGCCCGTG AC-G---G-- 372 CTGCCTGTGA CGGTCCATCC TGCCATTCCG TTACGAAGTT CAGAGAGTCG A-TTTCAGTA 34198 | || || | | |||||||||| |||||||||| |||||||||| | ||| |||| -T-CC-GT-- C-G------- TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA 419 CCCATTTTTC AGAATTTTAA AGTGTTTTGA AACGAGACCC CCTCGACGGT CCGTCGTGCC 34138 |||| |||| ||||||| | |||||||||| ||||||| | |||||||||| || |||||| CCCA-ATTTC AGAATTTCTA AGTGTTTTGA AACGAGA-CT CCTCGACGGT CCATCGTGCT 477 CATGACGGTC CGTCGTGGGA TCCGTCGTCT CAGCCAG-TT TTCCAGAAAT AACATCTCTT 34079 |||||||||| ||||||||| |||||||||| || || | || ||||| |||| || |||| | CATGACGGTC CGTCGTGGGT TCCGTCGTCT CAACCTGTTT TTCCAAAAAT AAAATCTGCT 537 GCTCAAAACG ACTAAACAGG TCGTTACA 34051 ||||||||| |||||||||| |||||||| ACTCAAAACG ACTAAACAGG TCGTTACA 565 hqPGS_C04HBa0077O05.1-_SGN-E550322+ (34614 34051) ******************************************************************************** EST sequence 93 -strand 674 n (File: SGN-E396057-) 1 TTTTTTATTC AAACCTTCTT TTTTTTACCC TAATTAGCAT ATAATTAAGA ATAAAAGATG 61 GAATAATAAC CCACTAATTT ACTCAAGGTT ACCTCTTTTA ACCCCCAGGT AATTAGACTT 121 ATTAACATAA ACCCACTAAC TTTATAATTA AAGTAGGAAT AGTCCAAAAC GTCCCTTAAA 181 ACGTGTAAAG AAATCCGACC CAGACTGGGA TTACGCAACC TGTGATGGCC CGTCGTGCCT 241 GCGACGGTCC GTCCTGCAGG TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC 301 TGTGACGGTC CGTCACGCCC GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA 361 GTCGATTTTT AGTACCCAAT TTCAGAATTT TTAAGTGTTT TGAAACGAGA CTCCTCGACG 421 GTCCATCGTG CTCATGACGG TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA 481 ATAAAATCTG CTACTCAAAA CGACTAAACA GGTCGTTACA TTTATGTTCT TCCTACTTAA 541 ATATTATTAT TATTTTACGA TTTATAACAC TATTAGAAAC AAAGATTTTC TCAACCATGA 601 ATTAATGAAA AAATTATGCC ATAAAATATA AAAAATTTAC TCATTTTTCA TTGAGCTAAT 661 TCATAAAAAA AAAA Predicted gene structure (within gDNA segment 35397 to 30543): Exon 1 34589 34051 ( 539 n); cDNA 1 520 ( 520 n); score: 0.863 PPA cDNA 663 674 MATCH C04HBa0077O05.1- SGN-E396057- 0.863 539 0.800 C PGS_C04HBa0077O05.1-_SGN-E396057- (34589 34051) Alignment (genomic DNA sequence = upper lines): TTCTTTATTC AAACCCTCTT TCTTTTACCC TAATTAGCAT ATAATTAAGA ATAAAAGATG 34530 || ||||||| ||||| |||| | |||||||| |||||||||| |||||||||| |||||||||| TTTTTTATTC AAACCTTCTT TTTTTTACCC TAATTAGCAT ATAATTAAGA ATAAAAGATG 60 GCAATAATAA CCCACTAATT TACTCAAGGT TACCTCTTTT AACCCCCAAG TAATTAGACT 34470 | |||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| G-AATAATAA CCCACTAATT TACTCAAGGT TACCTCTTTT AACCCCCAGG TAATTAGACT 119 TATTAACATT AACCCACTAA CTTTATAATT AAAACAGGAA TAGTCAAAAA CTTCCTTTAA 34410 ||||||||| |||||||||| |||||||||| ||| ||||| ||||| |||| | ||| |||| TATTAACATA AACCCACTAA CTTTATAATT AAAGTAGGAA TAGTCCAAAA CGTCCCTTAA 179 AACAT-TAAA GAAATCCGAC TCAGCCTGGG ATTACGCAGC CTGTGACGGC CTGTCATGCC 34351 ||| | |||| |||||||||| ||| ||||| |||||||| | |||||| ||| | ||| |||| AACGTGTAAA GAAATCCGAC CCAGACTGGG ATTACGCAAC CTGTGATGGC CCGTCGTGCC 239 TGCGACGGTC CGTCCTGCTG CTCCGTCACA GAGTTCAGAG ACTCAA-TTC CTTTAAAGAG 34292 |||||||||| |||||||| | | |||| || |||||||| |||||| ||| | |||||| TGCGACGGTC CGTCCTGCAG GT-CGTCGCA AGGTTCAGAG ACTCAATTTC CACCAAAGAG 298 TTTGTGACGG TCCGTCACGC CTGTGACGGT CCGTCCTGCC TGTGACGGTC CATCCTGCCA 34232 | |||||||| |||||||||| | ||||| | | | || || | | ||||| TCTGTGACGG TCCGTCACGC CCGTGAC-G- --G---T-CC -GT--C-G-- -----TGCCA 339 TTCCGTTACG AAGTTCAGAG AGTCGA-TTT CAGTACCCAT TTTTCAGAAT TTTAAAGTGT 34173 |||||||||| |||||||||| |||||| ||| |||||||| ||||||||| ||| |||||| TTCCGTTACG AAGTTCAGAG AGTCGATTTT TAGTACCCA- ATTTCAGAAT TTTTAAGTGT 398 TTTGAAACGA GACCCCCTCG ACGGTCCGTC GTGCCCATGA CGGTCCGTCG TGGGATCCGT 34113 |||||||||| || | ||||| ||||||| || |||| ||||| |||||||||| |||| ||||| TTTGAAACGA GA-CTCCTCG ACGGTCCATC GTGCTCATGA CGGTCCGTCG TGGGTTCCGT 457 CGTCTCAGCC AG-TTTTCCA GAAATAACAT CTCTTGCTCA AAACGACTAA ACAGGTCGTT 34054 ||||||| || | ||||||| |||||| || || | |||| |||||||||| |||||||||| CGTCTCAACC TGTTTTTCCA AAAATAAAAT CTGCTACTCA AAACGACTAA ACAGGTCGTT 517 ACA 34051 ||| ACA 520 hqPGS_C04HBa0077O05.1-_SGN-E396057- (34589 34051) ******************************************************************************** EST sequence 108 -strand 658 n (File: SGN-E377132-) 1 TTCCTTCTTT TACCCTAATT AGCATATATT TAAGAATAAA AGATGGAATA ATAACCCACT 61 AATTTACTCA AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA 121 CTAACTTTAT AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC 181 CGACCCAGAC TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT 241 GCAGGTCGTC GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA 301 CGCCCGTGAC GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC 361 CCAATTTCAG AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT 421 GACGGTCCGT CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT 481 CAAAACGACT AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT 541 TACGATTTAT AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT 601 ATGCCATAAA ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAA Predicted gene structure (within gDNA segment 35220 to 30553): Exon 1 34573 34051 ( 523 n); cDNA 2 505 ( 504 n); score: 0.859 PPA cDNA 648 658 MATCH C04HBa0077O05.1- SGN-E377132- 0.859 523 0.795 C PGS_C04HBa0077O05.1-_SGN-E377132- (34573 34051) Alignment (genomic DNA sequence = upper lines): TCTTTCTTTT ACCCTAATTA GCATATAATT AAGAATAAAA GATGGCAATA ATAACCCACT 34514 || ||||||| |||||||||| ||||||| || |||||||||| ||||| |||| |||||||||| TCCTTCTTTT ACCCTAATTA GCATATATTT AAGAATAAAA GATGG-AATA ATAACCCACT 60 AATTTACTCA AGGTTACCTC TTTTAACCCC CAAGTAATTA GACTTATTAA CATTAACCCA 34454 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| ||| |||||| AATTTACTCA AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA 120 CTAACTTTAT AATTAAAACA GGAATAGTCA AAAACTTCCT TTAAAACAT- TAAAGAAATC 34395 |||||||||| ||||||| | ||||||||| ||||| ||| ||||||| | |||||||||| CTAACTTTAT AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC 180 CGACTCAGCC TGGGATTACG CAGCCTGTGA CGGCCTGTCA TGCCTGCGAC GGTCCGTCCT 34335 |||| ||| | |||||||||| || ||||||| |||| ||| |||||||||| |||||||||| CGACCCAGAC TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT 240 GCTGCTCCGT CACAGAGTTC AGAGACTCAA -TTCCTTTAA AGAGTTTGTG ACGGTCCGTC 34276 || | | ||| | || |||| |||||||||| |||| || ||||| |||| |||||||||| GCAGGT-CGT CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC 299 ACGCCTGTGA CGGTCCGTCC TGCCTGTGAC GGTCCATCCT GCCATTCCGT TACGAAGTTC 34216 ||||| |||| | | | | || || | | | |||||||||| |||||||||| ACGCCCGTGA C-G---G--- T-CC-GT--C -G-------T GCCATTCCGT TACGAAGTTC 340 AGAGAGTCGA -TTTCAGTAC CCATTTTTCA GAATTTTAAA GTGTTTTGAA ACGAGACCCC 34157 |||||||||| ||| ||||| ||| ||||| |||||| || |||||||||| |||||| | | AGAGAGTCGA TTTTTAGTAC CCA-ATTTCA GAATTTCTAA GTGTTTTGAA ACGAGA-CTC 398 CTCGACGGTC CGTCGTGCCC ATGACGGTCC GTCGTGGGAT CCGTCGTCTC AGCCAG-TTT 34098 |||||||||| | |||||| | |||||||||| |||||||| | |||||||||| | || | ||| CTCGACGGTC CATCGTGCTC ATGACGGTCC GTCGTGGGTT CCGTCGTCTC AACCTGTTTT 458 TCCAGAAATA ACATCTCTTG CTCAAAACGA CTAAACAGGT CGTTACA 34051 |||| ||||| | |||| | |||||||||| |||||||||| ||||||| TCCAAAAATA AAATCTGCTA CTCAAAACGA CTAAACAGGT CGTTACA 505 hqPGS_C04HBa0077O05.1-_SGN-E377132- (34573 34051) ******************************************************************************** EST sequence 91 -strand 647 n (File: SGN-E396055-) 1 ATTAGCATAT AATTAAGAAT AAAAAGATGG AAATAATAAC CCACTAATTT ACTCAAGGGT 61 TCCTTTTTTT AACCCCCAGG GTAATTAGAC TTATTAACAT AAACCCCACT AACTTTATAA 121 TTAAAGTAGG AATAGTCCAA AACGTCCCTT AAAACGTGTA AAGAAATCCG ACCCAGACTG 181 GGATTACGCA ACCTGTGATG GCCCGTCGTG CCTGCGACGG TCCGTCCTGC AGGTCGTCGC 241 AAGGTTCAGA GACTCAATTT CCACCAAAGA GTCTGTGACG GTCCGTCACG CCCGTGACGG 301 TCCGTCGTGC CATTCCGTTA CGAAGTTCAG AGAGTCGATT TTTAGTACCC AATTTCAGAA 361 TTTCTAAGTG TTTTGAAACG AGACTCCTCG ACGGTCCATC GTGCTCATGA CGGTCCGTCG 421 TGGGTTCCGT CGTCTCAACC TGTTTTTCCA AAAATAAAAT CTGCTACTCA AAACGACTAA 481 ACAGGTCGTT ACATTTATGT TCTTCCTACT TAAATATTAT TATTATTTTA CGATTTATAA 541 CACTATTAGA AACAAAGATT TTCTCAACCA TGAATTAATG AAAAAATTAT GCCATAAAAT 601 ATAAAAAATT TACTCATTTT TCATTGAGCT AATTCATAAA AAAAAAA Predicted gene structure (within gDNA segment 35167 to 30543): Exon 1 34557 34051 ( 507 n); cDNA 1 493 ( 493 n); score: 0.832 PPA cDNA 636 647 MATCH C04HBa0077O05.1- SGN-E396055- 0.832 507 0.784 C PGS_C04HBa0077O05.1-_SGN-E396055- (34557 34051) Alignment (genomic DNA sequence = upper lines): ATTAGCATAT AATTAAGAAT -AAAAGATGG CAATAATAAC CCACTAATTT ACTCAA-GGT 34500 |||||||||| |||||||||| ||||||||| ||||||||| |||||||||| |||||| ||| ATTAGCATAT AATTAAGAAT AAAAAGATGG AAATAATAAC CCACTAATTT ACTCAAGGGT 60 TACCTCTTTT AACCCCCA-A GTAATTAGAC TTATTAACAT TAA-CCCACT AACTTTATAA 34442 | | | |||| |||||||| |||||||||| |||||||||| || |||||| |||||||||| TCCTTTTTTT AACCCCCAGG GTAATTAGAC TTATTAACAT AAACCCCACT AACTTTATAA 120 TTAAAACAGG AATAGTCAAA AACTTCCTTT AAAACAT-TA AAGAAATCCG ACTCAGCCTG 34383 ||||| ||| ||||||| || ||| ||| || ||||| | || |||||||||| || ||| ||| TTAAAGTAGG AATAGTCCAA AACGTCCCTT AAAACGTGTA AAGAAATCCG ACCCAGACTG 180 GGATTACGCA GCCTGTGACG GCCTGTCATG CCTGCGACGG TCCGTCCTGC TGCTCCGTCA 34323 |||||||||| ||||||| | ||| ||| || |||||||||| |||||||||| | | |||| GGATTACGCA ACCTGTGATG GCCCGTCGTG CCTGCGACGG TCCGTCCTGC AGGT-CGTCG 239 CAGAGTTCAG AGACTCAA-T TCCTTTAAAG AGTTTGTGAC GGTCCGTCAC GCCTGTGACG 34264 || |||||| |||||||| | ||| |||| ||| |||||| |||||||||| ||| ||||| CAAGGTTCAG AGACTCAATT TCCACCAAAG AGTCTGTGAC GGTCCGTCAC GCCCGTGAC- 298 GTCCGTCCTG CCTGTGACGG TCCATCCTGC CATTCCGTTA CGAAGTTCAG AGAGTCGA-T 34205 | | | || || | | ||| |||||||||| |||||||||| |||||||| | G---G---T- CC-GT--C-G -------TGC CATTCCGTTA CGAAGTTCAG AGAGTCGATT 340 TTCAGTACCC ATTTTTCAGA ATTTTAAAGT GTTTTGAAAC GAGACCCCCT CGACGGTCCG 34145 || ||||||| | ||||||| |||| |||| |||||||||| |||| | ||| ||||||||| TTTAGTACCC A-ATTTCAGA ATTTCTAAGT GTTTTGAAAC GAGA-CTCCT CGACGGTCCA 398 TCGTGCCCAT GACGGTCCGT CGTGGGATCC GTCGTCTCAG CCAG-TTTTC CAGAAATAAC 34086 |||||| ||| |||||||||| |||||| ||| ||||||||| || | ||||| || |||||| TCGTGCTCAT GACGGTCCGT CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA 458 ATCTCTTGCT CAAAACGACT AAACAGGTCG TTACA 34051 |||| | || |||||||||| |||||||||| ||||| ATCTGCTACT CAAAACGACT AAACAGGTCG TTACA 493 hqPGS_C04HBa0077O05.1-_SGN-E396055- (34557 34051) ******************************************************************************** EST sequence 89 -strand 640 n (File: SGN-E398551-) 1 TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAA TAATTTACTC AAGGTTACCT 61 CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA TAATTAAAGT 121 AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA CTGGGATTAC 181 GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT CGCAAGGTTC 241 AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA CGGTCCGTCG 301 TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA GAATTTCTAA 361 GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG TCGTGGGTTC 421 CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC TAAACAGGTC 481 GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA TAACACTATT 541 AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA AATATAAAAA 601 ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA Predicted gene structure (within gDNA segment 35165 to 30543): Exon 1 34555 34051 ( 505 n); cDNA 1 486 ( 486 n); score: 0.855 PPA cDNA 629 640 MATCH C04HBa0077O05.1- SGN-E398551- 0.855 505 0.789 C PGS_C04HBa0077O05.1-_SGN-E398551- (34555 34051) Alignment (genomic DNA sequence = upper lines): TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT CAAGGTTACC 34496 |||||||||| |||||||||| ||||||| || |||||||||| ||||||||| |||||||||| TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA ATAATTTACT CAAGGTTACC 59 TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT ATAATTAAAA 34436 |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| ||||||||| TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT ATAATTAAAG 119 CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG CCTGGGATTA 34377 ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ||||||||| TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG ACTGGGATTA 179 CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC GTCACAGAGT 34317 |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ||| || || CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C GTCGCAAGGT 238 TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT GACGGTCCGT 34258 |||||||||| || |||| ||||||| || |||||||||| ||||||| || ||| | | TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT GAC-G---G- 293 CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC GA-TTTCAGT 34199 | || || | | ||||||||| |||||||||| |||||||||| || ||| ||| --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC GATTTTTAGT 339 ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG TCCGTCGTGC 34139 ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| ||| |||||| ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG TCCATCGTGC 397 CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA TAACATCTCT 34080 ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| ||| |||| TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA TAAAATCTGC 457 TGCTCAAAAC GACTAAACAG GTCGTTACA 34051 | |||||||| |||||||||| ||||||||| TACTCAAAAC GACTAAACAG GTCGTTACA 486 hqPGS_C04HBa0077O05.1-_SGN-E398551- (34555 34051) ******************************************************************************** EST sequence 87 -strand 630 n (File: SGN-E396038-) 1 TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC AAGGTTACCT CTTTTAACCC 61 CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA TAATTAAAGT AGGAATAGTC 121 CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA CTGGGATTAC GCAACCTGTG 181 ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT CGCAAGGTTC AGAGACTCAA 241 TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA CGGTCCGTCG TGCCATTCCG 301 TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA GAATTTCTAA GTGTTTTGAA 361 ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG TCGTGGGTTC CGTCGTCTCA 421 ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC TAAACAGGTC GTTACATTTA 481 TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA TAACACTATT AGAAACAAAG 541 ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA AATATAAAAA ATTTACTCAT 601 TTTTCATAGA GTTAAATAAT AAAAAAAAAA Predicted gene structure (within gDNA segment 35155 to 30543): Exon 1 34545 34051 ( 495 n); cDNA 1 476 ( 476 n); score: 0.855 PPA cDNA 621 630 MATCH C04HBa0077O05.1- SGN-E396038- 0.855 495 0.786 C PGS_C04HBa0077O05.1-_SGN-E396038- (34545 34051) Alignment (genomic DNA sequence = upper lines): TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT CAAGGTTACC TCTTTTAACC 34486 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT CAAGGTTACC TCTTTTAACC 59 CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT ATAATTAAAA CAGGAATAGT 34426 |||| ||||| |||||||||| ||||| |||| |||||||||| ||||||||| ||||||||| CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT ATAATTAAAG TAGGAATAGT 119 CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG CCTGGGATTA CGCAGCCTGT 34367 | ||||| || | ||||||| | |||||||| |||||| ||| ||||||||| |||| ||||| CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG ACTGGGATTA CGCAACCTGT 179 GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC GTCACAGAGT TCAGAGACTC 34307 || |||| || | |||||||| |||||||||| |||| | | | ||| || || |||||||||| GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C GTCGCAAGGT TCAGAGACTC 238 AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT GACGGTCCGT CCTGCCTGTG 34248 || |||| ||||||| || |||||||||| ||||||| || ||| | | | || || AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT GAC-G---G- --T-CC-GT- 288 ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC GA-TTTCAGT ACCCATTTTT 34189 | | ||||||||| |||||||||| |||||||||| || ||| ||| ||||| ||| -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC GATTTTTAGT ACCCA-ATTT 338 CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG TCCGTCGTGC CCATGACGGT 34129 |||||||| |||||||||| |||||||| | ||||||||| ||| |||||| ||||||||| CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG TCCATCGTGC TCATGACGGT 397 CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA TAACATCTCT TGCTCAAAAC 34070 |||||||||| ||||||||| ||| || | | |||||| ||| ||| |||| | |||||||| CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA TAAAATCTGC TACTCAAAAC 457 GACTAAACAG GTCGTTACA 34051 |||||||||| ||||||||| GACTAAACAG GTCGTTACA 476 hqPGS_C04HBa0077O05.1-_SGN-E396038- (34545 34051) ******************************************************************************** EST sequence 96 -strand 525 n (File: SGN-E396069-) 1 AAAGTAGGAA TAGTCCAAAA CGTCCCTTAA AACGTGTAAA GAAATCCGAC CCCCACCGGG 61 ATTACGCAAC CTGTGATGGC CCGTCGTGCC TGCGACGGTC CGTCCTGCAG GTCGTCGCAA 121 GGTTCAGAGA CTCAATTTCC ACCAAAGAGT CTGTGACGGT CCGTCACGCC CGTGACGGTC 181 CGTCGTGCCA TTCCGTTACG AAGTTCAGAG AGTCGATTTT TAGTACCCAA TTTCAGAATT 241 TCTAAGTGTT TTGAAACGAG ACTCCTCGAC GGTCCATCGT GCTCATGACG GTCCGTCGTG 301 GGTTCCGTCG TCTCAACCTG TTTTTCCAAA AATAAAATCT GCTACTCAAA ACGACTAAAC 361 AGGTCGTTAC ATTTATGTTC TTCCTACTTA AATATTATTA TTATTTTACG ATTTATAACA 421 CTATTAGAAA CAAAGATTTT CTCAACCATG AATTAATGAA AAAATTATGC CATAAAATAT 481 AAAAAATTTA CTCATTTTTC ATTGAGCTAA TTCATAAAAA AAAAA Predicted gene structure (within gDNA segment 35824 to 30543): Exon 1 34439 34051 ( 389 n); cDNA 1 371 ( 371 n); score: 0.815 PPA cDNA 514 525 MATCH C04HBa0077O05.1- SGN-E396069- 0.815 389 0.741 C PGS_C04HBa0077O05.1-_SGN-E396069- (34439 34051) Alignment (genomic DNA sequence = upper lines): AAAACAGGAA TAGTCAAAAA CTTCCTTTAA AACAT-TAAA GAAATCCGAC TCAGCCTGGG 34381 ||| ||||| ||||| |||| | ||| |||| ||| | |||| |||||||||| | | ||| AAAGTAGGAA TAGTCCAAAA CGTCCCTTAA AACGTGTAAA GAAATCCGAC CCCCACCGGG 60 ATTACGCAGC CTGTGACGGC CTGTCATGCC TGCGACGGTC CGTCCTGCTG CTCCGTCACA 34321 |||||||| | |||||| ||| | ||| |||| |||||||||| |||||||| | | |||| || ATTACGCAAC CTGTGATGGC CCGTCGTGCC TGCGACGGTC CGTCCTGCAG GT-CGTCGCA 119 GAGTTCAGAG ACTCAA-TTC CTTTAAAGAG TTTGTGACGG TCCGTCACGC CTGTGACGGT 34262 |||||||| |||||| ||| | |||||| | |||||||| |||||||||| | |||||||| AGGTTCAGAG ACTCAATTTC CACCAAAGAG TCTGTGACGG TCCGTCACGC CCGTGACGGT 179 CCGTCCTGCC TGTGACGGTC CATCCTGCCA TTCCGTTACG AAGTTCAGAG AGTCGA-TTT 34203 ||| | | ||| | || |||||||||| |||||||||| |||||| ||| CCG---T--C -GTG-C---- --------CA TTCCGTTACG AAGTTCAGAG AGTCGATTTT 220 CAGTACCCAT TTTTCAGAAT TTTAAAGTGT TTTGAAACGA GACCCCCTCG ACGGTCCGTC 34143 |||||||| ||||||||| || |||||| |||||||||| || | ||||| ||||||| || TAGTACCCA- ATTTCAGAAT TTCTAAGTGT TTTGAAACGA GA-CTCCTCG ACGGTCCATC 278 GTGCCCATGA CGGTCCGTCG TGGGATCCGT CGTCTCAGCC AG-TTTTCCA GAAATAACAT 34084 |||| ||||| |||||||||| |||| ||||| ||||||| || | ||||||| |||||| || GTGCTCATGA CGGTCCGTCG TGGGTTCCGT CGTCTCAACC TGTTTTTCCA AAAATAAAAT 338 CTCTTGCTCA AAACGACTAA ACAGGTCGTT ACA 34051 || | |||| |||||||||| |||||||||| ||| CTGCTACTCA AAACGACTAA ACAGGTCGTT ACA 371 hqPGS_C04HBa0077O05.1-_SGN-E396069- (34439 34051) ******************************************************************************** EST sequence 73 -strand 519 n (File: SGN-E374998-) 1 GGAATAGTAC ATAACGTCCC TTAAAACGTG TAAAAGAAAT CCGACCCAGA CTGGGATTAC 61 GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT CGCAAGGTTC 121 AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA CGGTCCGTCG 181 TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA GAATTTCTAA 241 GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG TCGTGGGTTC 301 CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC TAAACAGGTC 361 GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA TAACACTATT 421 AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA AATATAAAAA 481 ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAA Predicted gene structure (within gDNA segment 35774 to 30553): Exon 1 34433 34051 ( 383 n); cDNA 1 366 ( 366 n); score: 0.813 PPA cDNA 509 519 MATCH C04HBa0077O05.1- SGN-E374998- 0.813 383 0.738 C PGS_C04HBa0077O05.1-_SGN-E374998- (34433 34051) Alignment (genomic DNA sequence = upper lines): GGAATAGTCA AAAACTTCCT TTAAAACAT- TA-AAGAAAT CCGACTCAGC CTGGGATTAC 34376 |||||||| | ||| ||| ||||||| | || ||||||| ||||| ||| |||||||||| GGAATAGTAC ATAACGTCCC TTAAAACGTG TAAAAGAAAT CCGACCCAGA CTGGGATTAC 60 GCAGCCTGTG ACGGCCTGTC ATGCCTGCGA CGGTCCGTCC TGCTGCTCCG TCACAGAGTT 34316 ||| |||||| | |||| ||| ||||||||| |||||||||| ||| | || | || || ||| GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTC-G TCGCAAGGTT 119 CAGAGACTCA A-TTCCTTTA AAGAGTTTGT GACGGTCCGT CACGCCTGTG ACGGTCCGTC 34257 |||||||||| | |||| | |||||| ||| |||||||||| |||||| ||| |||||||| CAGAGACTCA ATTTCCACCA AAGAGTCTGT GACGGTCCGT CACGCCCGTG ACGGTCCG-- 177 CTGCCTGTGA CGGTCCATCC TGCCATTCCG TTACGAAGTT CAGAGAGTCG A-TTTCAGTA 34198 | | | |||||||||| |||||||||| |||||||||| | ||| |||| -T--C-G--- ---------- TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA 220 CCCATTTTTC AGAATTTTAA AGTGTTTTGA AACGAGACCC CCTCGACGGT CCGTCGTGCC 34138 |||| |||| ||||||| | |||||||||| ||||||| | |||||||||| || |||||| CCCA-ATTTC AGAATTTCTA AGTGTTTTGA AACGAGA-CT CCTCGACGGT CCATCGTGCT 278 CATGACGGTC CGTCGTGGGA TCCGTCGTCT CAGCCAG-TT TTCCAGAAAT AACATCTCTT 34079 |||||||||| ||||||||| |||||||||| || || | || ||||| |||| || |||| | CATGACGGTC CGTCGTGGGT TCCGTCGTCT CAACCTGTTT TTCCAAAAAT AAAATCTGCT 338 GCTCAAAACG ACTAAACAGG TCGTTACA 34051 ||||||||| |||||||||| |||||||| ACTCAAAACG ACTAAACAGG TCGTTACA 366 hqPGS_C04HBa0077O05.1-_SGN-E374998- (34433 34051) ******************************************************************************** EST sequence 300 +strand 545 n (File: SGN-E241959+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACA Predicted gene structure (within gDNA segment 35710 to 32173): Exon 1 34625 34061 ( 565 n); cDNA 1 545 ( 545 n); score: 0.850 MATCH C04HBa0077O05.1- SGN-E241959+ 0.850 565 1.037 C PGS_C04HBa0077O05.1-_SGN-E241959+ (34625 34061) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 59 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 178 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 238 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 297 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 357 GACGGTCCGT CCTGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC 34208 ||| | | | || || | | ||||||||| |||||||||| |||||||||| GAC-G---G- --T-CC-GT- -C-G------ -TGCCATTCC GTTACGAAGT TCAGAGAGTC 398 GA-TTTCAGT ACCCATTTTT CAGAATTTTA AAGTGTTTTG AAACGAGACC CCCTCGACGG 34149 || ||| ||| ||||| ||| |||||||| |||||||||| |||||||| | ||||||||| GATTTTTAGT ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGA-C TCCTCGACGG 456 TCCGTCGTGC CCATGACGGT CCGTCGTGGG ATCCGTCGTC TCAGCCAG-T TTTCCAGAAA 34090 ||| |||||| ||||||||| |||||||||| ||||||||| ||| || | | |||||| ||| TCCATCGTGC TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA 516 TAACATCTCT TGCTCAAAAC GACTAAACA 34061 ||| |||| | |||||||| ||||||||| TAAAATCTGC TACTCAAAAC GACTAAACA 545 hqPGS_C04HBa0077O05.1-_SGN-E241959+ (34625 34061) ******************************************************************************** EST sequence 147 -strand 660 n (File: SGN-E349296-) 1 AATATTATCA ATACATATTA TTCGCTATTA AGAGCTTACT ACGAATATCG TAAGAGAAAC 61 CATAACCTAC CTCCACCGAA GATTCGTGAT CAAGCAAGTG ATTTCCCAAG CTTTGTGTTT 121 TTTCCTCTCG TTCGATCCTC TTTCTCGTTC GACTTTCTCT CTCTTTCTCT TGTTCTTTCT 181 ATTTTCTTTA TTCAAACCCT CTTTCTTTTA CCCTAATTAG TATATAATTA AGAATAAAAT 241 ATGGCAATAA TAACCCACTA ATTAACTTAA GGTTACCTCT TTTAACCCCC AAGTAATTAG 301 ACTTATTAAC ATTAACCCAC TAACTTTATA ATTAAAGCAG GAATAGTCAA AAACGTCCCT 361 TAAAACAATT GAGGAATTCC GACTCAGACT GGGATTTACG CAGCCTGTGA CAGCCCGTTG 421 TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC GCAAGGTTCA GAGACTGGAT TTTCACTGAA 481 GACTCTGTGA TGGTCCATCA CGCCTGTGAC GGTCCGTCTT GCCATTCCGT TACGAAGTTC 541 AGAGAGTCGA TTTTCAGTAC CCAATTTCAG ATTTCCTAAG TGTTTTGAAA TGAGACCCTG 601 CGACGGTCCG TCGTGCCCAT GATGGTCCGT CGTGGGGTCC GTCATTTCTG CCAGTTTTTC Predicted gene structure (within gDNA segment 37503 to 32533): Exon 1 34633 34097 ( 537 n); cDNA 136 658 ( 523 n); score: 0.841 MATCH C04HBa0077O05.1- SGN-E349296- 0.841 537 0.814 C PGS_C04HBa0077O05.1-_SGN-E349296- (34633 34097) Alignment (genomic DNA sequence = upper lines): TCCTC-TTCT CGTTCGA--T CCTCTCTCTC TCT-TTGTTC TTTCTATTTT CTTTATTCAA 34578 ||||| |||| ||||||| | |||||||| ||| |||||| |||||||||| |||||||||| TCCTCTTTCT CGTTCGACTT TCTCTCTCTT TCTCTTGTTC TTTCTATTTT CTTTATTCAA 195 ACCCTCTTTC TTTTACCCTA ATTAGCATAT AATTAAGAAT AAAAGATGGC AATAATAACC 34518 |||||||||| |||||||||| ||||| |||| |||||||||| |||| ||||| |||||||||| ACCCTCTTTC TTTTACCCTA ATTAGTATAT AATTAAGAAT AAAATATGGC AATAATAACC 255 CACTAATTTA CTCAAGGTTA CCTCTTTTAA CCCCCAAGTA ATTAGACTTA TTAACATTAA 34458 |||||||| | || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTAATTAA CTTAAGGTTA CCTCTTTTAA CCCCCAAGTA ATTAGACTTA TTAACATTAA 315 CCCACTAACT TTATAATTAA AACAGGAATA GTCAAAAACT TCCTTTAAAA C-ATTAAAGA 34399 |||||||||| |||||||||| | |||||||| ||||||||| ||| |||||| | ||| | || CCCACTAACT TTATAATTAA AGCAGGAATA GTCAAAAACG TCCCTTAAAA CAATTGAGGA 375 AATCCGACTC AGCCTGGGA- TTACGCAGCC TGTGACGGCC TGTCATGCCT GCGACGGTCC 34340 | |||||||| || |||||| |||||||||| |||||| ||| || ||||| |||||||||| ATTCCGACTC AGACTGGGAT TTACGCAGCC TGTGACAGCC CGTTGTGCCT GCGACGGTCC 435 GTCCTGCTGC TCCGTCACAG AGTTCAGAGA CTCAATTCCT TTAAAGAGTT TGTGACGGTC 34280 ||||||| | | |||| || |||||||| | | | || || | | || | GTCCTGCAGG T-CGTCGCAA GGTTCAGAG- ----A---C- -T--GGA-TT T-TCACTG-A 479 CGTCACGCCT GTGACGGTCC GTCCTGCCTG TGACGGTCCA TCCTGCCATT CCGTTACGAA 34220 | || || |||| ||||| || ||||| ||||||||| || ||||||| |||||||||| AG--AC-TCT GTGATGGTCC ATCACGCCTG TGACGGTCCG TCTTGCCATT CCGTTACGAA 536 GTTCAGAGAG TCGA-TTTCA GTACCCATTT TTCAGAATTT TAAAGTGTTT TGAAACGAGA 34161 |||||||||| |||| ||||| ||||||| | |||||| || |||||||| ||||| |||| GTTCAGAGAG TCGATTTTCA GTACCCA-AT TTCAGATTTC CTAAGTGTTT TGAAATGAGA 595 CCCCCTCGAC GGTCCGTCGT GCCCATGACG GTCCGTCGTG GGATCCGTCG TCTCAGCCAG 34101 ||| |||| |||||||||| |||||||| | |||||||||| || |||||| | || ||||| -CCCTGCGAC GGTCCGTCGT GCCCATGATG GTCCGTCGTG GGGTCCGTCA TTTCTGCCAG 654 TTTT 34097 |||| TTTT 658 hqPGS_C04HBa0077O05.1-_SGN-E349296- (34633 34097) ******************************************************************************** EST sequence 257 +strand 454 n (File: SGN-E396070+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCGGGGGGGG 421 GAGTTTCTAA TTGTTTTGAA ACTAGACTCC TCGA Predicted gene structure (within gDNA segment 35720 to 33093): Exon 1 34625 34252 ( 374 n); cDNA 2 374 ( 373 n); score: 0.880 MATCH C04HBa0077O05.1- SGN-E396070+ 0.880 374 0.824 C PGS_C04HBa0077O05.1-_SGN-E396070+ (34625 34252) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | ||||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTC- TTATTCAAAC CCTCCTTCTT 60 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 119 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 179 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 239 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 298 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 358 GACGGTCCGT CCTGCC 34252 |||||||||| | |||| GACGGTCCGT CGTGCC 374 hqPGS_C04HBa0077O05.1-_SGN-E396070+ (34625 34252) ******************************************************************************** EST sequence 261 +strand 472 n (File: SGN-E236652+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GA Predicted gene structure (within gDNA segment 35710 to 32903): Exon 1 34625 34252 ( 374 n); cDNA 1 373 ( 373 n); score: 0.880 MATCH C04HBa0077O05.1- SGN-E236652+ 0.880 374 0.792 C PGS_C04HBa0077O05.1-_SGN-E236652+ (34625 34252) Alignment (genomic DNA sequence = upper lines): TCGTTCGATC CTCTCTCTCT CTTTGTTCTT TCTATTTTCT TTATTCAAAC CCTCTTTCTT 34566 ||| | | ||||||||| | ||||||| | | |||| |||||||||| |||| ||||| TCGATTCTCC TTCTCTCTCT TTCTGTTCTT T-TCTTTTTC TTATTCAAAC CCTCCTTCTT 59 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACCCA CTAATTTACT 34506 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT 118 CAAGGTTACC TCTTTTAACC CCCAAGTAAT TAGACTTATT AACATTAACC CACTAACTTT 34446 |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| |||||||||| CAAGGTTACC TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT 178 ATAATTAAAA CAGGAATAGT CAAAAACTTC CTTTAAAACA T-TAAAGAAA TCCGACTCAG 34387 ||||||||| ||||||||| | ||||| || | ||||||| | |||||||| |||||| ||| ATAATTAAAG TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG 238 CCTGGGATTA CGCAGCCTGT GACGGCCTGT CATGCCTGCG ACGGTCCGTC CTGCTGCTCC 34327 ||||||||| |||| ||||| || |||| || | |||||||| |||||||||| |||| | | | ACTGGGATTA CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C 297 GTCACAGAGT TCAGAGACTC AA-TTCCTTT AAAGAGTTTG TGACGGTCCG TCACGCCTGT 34268 ||| || || |||||||||| || |||| ||||||| || |||||||||| ||||||| || GTCGCAAGGT TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT 357 GACGGTCCGT CCTGCC 34252 |||||||||| | |||| GACGGTCCGT CGTGCC 373 hqPGS_C04HBa0077O05.1-_SGN-E236652+ (34625 34252) ******************************************************************************** EST sequence 126 -strand 548 n (File: SGN-E356257-) 1 GTTAACTAGA AAATTAAAGT GATAGAGTCA AATAATGTAA CGACCCGTTT AGTCGTTTTG 61 AGCAGCAGAC TTTATTTCTG GAAAAACTGG CAGAAGCGAC GGACCCCACG ACGGACCGTC 121 ATGGGCACGA CGGACCATCG CAGGGTCTCG TTTCAAAACC CTCTTTCTTT TACCCCAAAT 181 TAACATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT TAGGGTTACC 241 TCTTTTAACC CCAAGAATTT GAGTTATTAA TATAAACCCA CGAAATCTAT AATTAAGGAA 301 AGAATAGTCC AAAAACGTCC CTTAAAACGT GTAAGGAAAT CCGATTCTGC CTGGGATTTG 361 CGCAACCTGT GACGGGCCGT CGTGACTGTG ACGGTCCGTC CTGCAGGTCG TCGCAAGGGT 421 CAGAGAGTCA ATTTCCACTG AACAATCTAT GACGGTCCGT CACGCCTGTG ATGGTCCGTC 481 CTGTCATTCC GTCACGAAGT TCAGAGAGTC GATTTTCAGT ACCCAATTTC AGATTTTCTA 541 AGTGTTTT Predicted gene structure (within gDNA segment 36739 to 30924): Exon 1 34579 34255 ( 325 n); cDNA 156 482 ( 327 n); score: 0.814 MATCH C04HBa0077O05.1- SGN-E356257- 0.814 325 0.593 C PGS_C04HBa0077O05.1-_SGN-E356257- (34579 34255) Alignment (genomic DNA sequence = upper lines): AAACCCTCTT TCTTTTA-CC CTAATTAGCA TATAATTAAG AATAAAAGAT GGCAATAATA 34521 |||||||||| ||||||| || | ||||| || |||||||||| |||||||||| |||||||||| AAACCCTCTT TCTTTTACCC CAAATTAACA TATAATTAAG AATAAAAGAT GGCAATAATA 215 ACCCACTAAT TTACTCAAGG TTACCTCTTT TAACCCCCAA GTAATTAGAC TTATTAACAT 34461 ||||||||| | ||| | || |||||||||| ||| |||||| | |||| || ||||||| || CCCCACTAAT TAACTTAGGG TTACCTCTTT TAA-CCCCAA G-AATTTGAG TTATTAATAT 273 TAACCCACTA ACTTTATAAT TAAAACAGGA ATAGT-CAAA AACTTCCTTT AAAACAT-TA 34403 ||||||| | | | |||||| ||| | || ||||| |||| ||| ||| || ||||| | || AAACCCACGA AATCTATAAT TAAGGAAAGA ATAGTCCAAA AACGTCCCTT AAAACGTGTA 333 AAGAAATCCG ACTCAGCCTG GGA-TTACGC AGCCTGTGAC GGCCTGTCAT GCCTGCGACG 34344 | |||||||| | || ||||| ||| || ||| | |||||||| || | ||| | | ||| |||| AGGAAATCCG ATTCTGCCTG GGATTTGCGC AACCTGTGAC GGGCCGTCGT GACTGTGACG 393 GTCCGTCCTG CTGCTCCGTC ACAGAGTTCA GAGACTCAA- TTCCTTTAAA GAGTTTGTGA 34285 |||||||||| | | | |||| || | ||| |||| |||| |||| | || | | | ||| GTCCGTCCTG CAGGT-CGTC GCAAGGGTCA GAGAGTCAAT TTCCACTGAA CAATCTATGA 452 CGGTCCGTCA CGCCTGTGAC GGTCCGTCCT 34255 |||||||||| ||||||||| |||||||||| CGGTCCGTCA CGCCTGTGAT GGTCCGTCCT 482 hqPGS_C04HBa0077O05.1-_SGN-E356257- (34579 34255) ******************************************************************************** EST sequence 244 +strand 356 n (File: SGN-E396037+) 1 GGGCAGCGGA GCCTCATGTT TTGTTTACCA CTATGCCGCA TCTATATGAT TAACATGATG 61 ATGATGATGA TGACTACCAC GATTCACGAG AAGAAGATGA GGATGAATGG GGTATTGAGA 121 TGGATGTTTT ACTCGAGGTT ACCTCTTTTA ACCCCCAGGT AATTAGACTT ATTAACATAA 181 ACCCACTAAC TTTATAATTA AAGTAGGAAT AGTCCAAAAC GTCCCTTAAA ACGTGTAAAG 241 AAATCCGACC CAGACTGGGA TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC 301 GTCCTGCAGG TCTTCTCTAG GTTCAGAGAC TCTCTTTCCA CCAAAGAGTC TGTGAC Predicted gene structure (within gDNA segment 36453 to 32287): Exon 1 34511 34284 ( 228 n); cDNA 128 356 ( 229 n); score: 0.851 MATCH C04HBa0077O05.1- SGN-E396037+ 0.851 228 0.640 C PGS_C04HBa0077O05.1-_SGN-E396037+ (34511 34284) Alignment (genomic DNA sequence = upper lines): TTTACTCAAG GTTACCTCTT TTAACCCCCA AGTAATTAGA CTTATTAACA TTAACCCACT 34452 ||||||| || |||||||||| |||||||||| ||||||||| |||||||||| | |||||||| TTTACTCGAG GTTACCTCTT TTAACCCCCA GGTAATTAGA CTTATTAACA TAAACCCACT 187 AACTTTATAA TTAAAACAGG AATAGTCAAA AACTTCCTTT AAAACAT-TA AAGAAATCCG 34393 |||||||||| ||||| ||| ||||||| || ||| ||| || ||||| | || |||||||||| AACTTTATAA TTAAAGTAGG AATAGTCCAA AACGTCCCTT AAAACGTGTA AAGAAATCCG 247 ACTCAGCCTG GGATTACGCA GCCTGTGACG GCCTGTCATG CCTGCGACGG TCCGTCCTGC 34333 || ||| ||| |||||||||| ||||||| | ||| ||| || |||||||||| |||||||||| ACCCAGACTG GGATTACGCA ACCTGTGATG GCCCGTCGTG CCTGCGACGG TCCGTCCTGC 307 TGCTCCGTCA CAGAGTTCAG AGACTC-AAT TCCTTTAAAG AGTTTGTGAC 34284 | | | || | |||||| |||||| | ||| |||| ||| |||||| AGGT-CTTCT CTAGGTTCAG AGACTCTCTT TCCACCAAAG AGTCTGTGAC 356 hqPGS_C04HBa0077O05.1-_SGN-E396037+ (34511 34284) ******************************************************************************** EST sequence 227 +strand 686 n (File: SGN-E241789+) 1 ATGTCTGATC TTCAAGGACA TCAAGACATG AATGAGAGAG AATCCAGTCC GAGCTAGGAA 61 CAATAGCTCA CCCTGAAATC TGACGTGATG AAGACTGGTT AGAGTTGCGG TTGAGTTGAA 121 GACGACGGTA CGTTTGCTGC ACTCCACAAT TAACAAAAAG AAAACATAAA AGTAGGGGTC 181 AGTACAAACA CGAGTACTGA GTAGATATCA TCGGCCAACT CAGAATAGAG AACAATATAT 241 ATCAAATAAT AAAATAAAAT CAACCATAAC ACTTAACAGG TGACAACAAC AAGTACCATA 301 ACCATTGGGC ACAACCCAAG AACATCTATG AGGACTCAAG CCTCCACACC ATACTCATTT 361 GGGAAACAGG TTCATTAAAT TGAGTACATT AACATAATTC AAGATTCATT CTTTTTACTA 421 TCGTGGTGTC GGAACGTGAT ACTCCGATCC CCTAATGCTA CGTGTCGGTT CGTGACACCC 481 GATCCCCTAA TACTACGTGT CGGTTCGTTA CACCCGATCT CCTAATACTA CGTGCCGATT 541 CGTGACACCC GATCCATTAA TACTATGTGT CGGTTCGTGA CACCCGATCC ATTAATACTA 601 CGTGTCGGTT CGTGACACCC GATCCCCTAA CCTCATTCTT TTAGTTCATC AAGCCTTCTT 661 TTATACCAAG ACATCATCAT TAACAA Predicted gene structure (within gDNA segment 37437 to 34256): Exon 1 35682 35058 ( 625 n); cDNA 1 611 ( 611 n); score: 0.807 Intron 1 35057 34941 ( 117 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.88) Exon 2 34940 34866 ( 75 n); cDNA 612 686 ( 75 n); score: 0.920 MATCH C04HBa0077O05.1- SGN-E241789+ 0.819 700 1.020 C PGS_C04HBa0077O05.1-_SGN-E241789+ (35682 35058,34940 34866) Alignment (genomic DNA sequence = upper lines): ATGCCGGAAC ATCAAGG-CA TCAAGACATG AA-GA-AGAA GATCCAGTCC AAGCTAGAAG 35626 ||| | || | |||||| || |||||||||| || || ||| ||||||||| |||||| | ATGTCTGATC TTCAAGGACA TCAAGACATG AATGAGAGAG AATCCAGTCC GAGCTAGGAA 60 CTTTAGCTCA CCCTGAAATC TGGTGTGATG AAGACTGGCT AGAGTTGCGG TTGGATTGAA 35566 | ||||||| |||||||||| || |||||| |||||||| | |||||||||| ||| ||||| CAATAGCTCA CCCTGAAATC TGACGTGATG AAGACTGGTT AGAGTTGCGG TTGAGTTGAA 120 GACGACGATA CGTTTGCTGC ACTCCACAAT GAACAAAAAG AAAACATACA AGTAGGGGTC 35506 ||||||| || |||||||||| |||||||||| ||||||||| |||||||| | |||||||||| GACGACGGTA CGTTTGCTGC ACTCCACAAT TAACAAAAAG AAAACATAAA AGTAGGGGTC 180 AGTAGAAAAC ACGAGTACTG AGTAGATATC ATCGGCCAAC TCAAAATAGA AAACAGTATA 35446 |||| |||| |||||||||| |||||||||| |||||||||| ||| |||||| |||| |||| AGTA-CAAAC ACGAGTACTG AGTAGATATC ATCGGCCAAC TCAGAATAGA GAACAATATA 239 TATCAGATAA TATCATAAAA TCAACTACAG TACTTAACAT GCAACATTTA CAATTACCAT 35386 ||||| |||| || |||||| ||||| | | |||||||| | ||| | ||| |||||| TATCAAATAA TAAAATAAAA TCAACCATAA CACTTAACAG GTGACAACAA CAAGTACCAT 299 AACCCTTGGT CATAACACCA ATCTCATCAA TGAGGACTCA CGCCTCCCCA TCATACTCAT 35326 |||| |||| || ||| ||| | |||| | |||||||||| |||||| || ||||||||| AACCATTGGG CACAAC-CCA AGAACATCTA TGAGGACTCA AGCCTCCACA CCATACTCAT 358 TTGAGAATTA GGTTCATTAA ATTAAGTATA TTAACATATT TCAAGATTCA TTCTCTTTAC 35266 ||| ||| | |||||||||| ||| |||| | |||||||| | |||||||||| |||| ||||| TTGGGAAACA GGTTCATTAA ATTGAGTACA TTAACATAAT TCAAGATTCA TTCTTTTTAC 418 TAATCCTGGT GCCGGAACGT GACACTCCGA TCCTCATATA CTATCCTGGT ACCGGACGTG 35206 | ||| |||| | |||||||| || ||||||| ||| | || ||| | | || | | |||| T-ATCGTGGT GTCGGAACGT GATACTCCGA TCCCCTAATG CTA-CGT-GT -CGGTTCGTG 474 GCACCCGATC CATATACTAT CCTGGTGTCG GAACGTGACA CTCCGATCCT CATATACTAT 35146 ||||||||| | || || | |||||| | ||| ||| | ||||| || | || | || ACACCCGATC C-CCTAATA- CTACGTGTCG GTTCGTTACA C-CCGAT-CT CCTA-A-TA- 527 CCTGGTACCG GAACGTGGCA CCCGATCCAT ATACTATCCT GGTGTCGGAA CGTGACACCC 35086 | || ||| |||| || |||||||||| || || | ||||||| |||||||||| CTACGTGCCG ATTCGTGACA CCCGATCCAT -TAATA-CTA TGTGTCGGTT CGTGACACCC 585 GATCCATATA CTATCCTGGT GTCGGAACGT GACACTCCGA TCCTCACATA CTATCCTGGT 35026 ||||||| || || | || ||||| | GATCCAT-TA ATA-CTACGT GTCGGTTC.. .......... .......... .......... 611 ACCGGAACGT GGCACCCGAT CCATATACTA TCCTGGTGTC GAAACGTGAC ACTCCGATCC 34966 .......... .......... .......... .......... .......... .......... 611 TCATATACTA TCCTGGTACC GGAACGTGGC ACCCGATCCC CTAATCTCAC TACTTTCGTT 34906 ||| | |||||||||| |||| |||| | ||| ||| .......... .......... .....GTGAC ACCCGATCCC CTAACCTCAT TCTTTTAGTT 646 CATCAAGCCT TCTTTTATAC CAAGACATCA TCATTAACAA 34866 |||||||||| |||||||||| |||||||||| |||||||||| CATCAAGCCT TCTTTTATAC CAAGACATCA TCATTAACAA 686 hqPGS_C04HBa0077O05.1-_SGN-E241789+ (35682 35058,34940 34866) ******************************************************************************** EST sequence 294 +strand 730 n (File: SGN-E546506+) 1 TTTTTTTTTT TTTTTTTTAA TAAAAACAAT TCAATACTAT TATTATTATC CCCAAAATCT 61 GGAAGTCATC ATCACAAGAA CATCTATCTC AAATTACTTA ACTAGGAATG TCTAAGAACA 121 AAATAACTAA AAAGCTAGTC CATGCCGGAA ATTCAAGGCA TCAAGACTTG AAGAAGAAGA 181 CCCAGTCCAA GCTAGACGCA TTAGCTCACC CTGAATTTTC CGATGAAGTG AAGACTGGCT 241 AGATCTACTG TTGAGTTGAA GTTGACGGAA CGTTTGCTGC ATTACACAAA TAACAAAGAG 301 GAAAACATGA AAGTAGGGGT CAGTACAACC ACACGTACTG AGTAGATATC ATCGGCCAAC 361 TCAAAATAGG GAACAGTATA TATCAATAAT AATGTAAATC AACTACAATA CTCAACATGT 421 AGCAATAACA CCATGAATTC ATCAATAACT ACAACCGAGT TCACACATGA GGACTCAAGC 481 CTCAATACCA TACTCATTTG GGAATTAAGT TCATTAGATT GAGTATATTC ATTATCTTTC 541 AAGATTCATT ATCTTTCTTC CTCTTGTGTC GGTACGTGAC ACTCCGATCC TCTATTTCTA 601 TCCTGGTGCC GGAACGTGGC ACTCCGATCC TCATTCTATC CTGGTACCGG AACGTGGCAC 661 CCGATCCATT TTCTATCCTG GTGTCGGAAC GTGACACTCC GATCCTCATA TTCTATCCTG 721 GTACCGGAAC Predicted gene structure (within gDNA segment 41985 to 34160): Exon 1 36555 36521 ( 35 n); cDNA 3 37 ( 35 n); score: 0.714 Intron 1 36520 35790 ( 731 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.94) Exon 2 35789 35227 ( 563 n); cDNA 38 595 ( 558 n); score: 0.793 Intron 2 35226 35078 ( 149 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0.88) Exon 3 35077 34941 ( 137 n); cDNA 596 730 ( 135 n); score: 0.927 MATCH C04HBa0077O05.1- SGN-E546506+ 0.819 735 1.007 C PGS_C04HBa0077O05.1-_SGN-E546506+ (36555 36521,35789 35227,35077 34941) Alignment (genomic DNA sequence = upper lines): TTTTTTTTTT TGTGTTAGTT ATGTCAATGT AACACATTAT ACGTTTGATT GTGTTATTTA 36496 |||||||||| | | ||| | | |||| || || TTTTTTTTTT TTTTTTAATA AAAACAATTC AATAC..... .......... .......... 37 CTATAATAGA ATAGATTTTT AAGTGTATAT GAAATTTTGA TTCTGTTATA GTTGGTATGT 36436 .......... .......... .......... .......... .......... .......... 37 ATTTTTATAT TTCATAGATT TAATGTATTT TGTATTCATA GATTTGAAAG TGTATATGAA 36376 .......... .......... .......... .......... .......... .......... 37 ATTTTGATTC TATTATAGTT AATATGTATT TCATAGATTT AATGTATTTA TATTCTGTTT 36316 .......... .......... .......... .......... .......... .......... 37 TTTTTTGTTG AGTTAGTTAT GTCGATGTTG AGAGTTTTAA ACATTTGCTA CTTTTTAAAA 36256 .......... .......... .......... .......... .......... .......... 37 ATTTTATCTC CCCTAAATAG CTTCTGTTTG TTACATAAAT TCTATATTCT TTTTAATTAA 36196 .......... .......... .......... .......... .......... .......... 37 ACCAAATAAT TATAATATAA TTAACATACA TAATAAAGTA AAATTTTGAT ATTATCACTA 36136 .......... .......... .......... .......... .......... .......... 37 AATATTGAAA CTACTGATAC AATAACCTAT TAAATACTAA AATATTGACA TTTTAAAAAA 36076 .......... .......... .......... .......... .......... .......... 37 ATTTCCGTTA TTAATTCCAA CAAAAAGAAT AAGTGGAAAA AAAACATAAA TAGCTAACTT 36016 .......... .......... .......... .......... .......... .......... 37 TCTGAAAAAT AATTGCAAAA CTATAGCAGC ATTGATCCAC TATCATTTTA TTGCATATAA 35956 .......... .......... .......... .......... .......... .......... 37 ATGTCACGAT CCAAATCGGG TCGCGACTGA CACCCACACT TACCCTCCTA TGTGAGCGAA 35896 .......... .......... .......... .......... .......... .......... 37 CCAACCAATC TAAACCTTAA CATTTCAATA TAATATCAAC AGAAAGTAAT GCGGAAGACT 35836 .......... .......... .......... .......... .......... .......... 37 TAAACTCATT AATAAAAACC AATTCAATAA CTTCTAAAAA CTCAACAACT ATTATTATCC 35776 | | |||||||||| .......... .......... .......... .......... ......TATT ATTATTATCC 51 CCAAAATCTG GAAGTCATCA TCACAAGAAC ATCTACTTCA AATTACTAAA TCTAAGAGTA 35716 |||||||||| |||||||||| |||||||||| ||||| ||| ||||||| || ||| || | CCAAAATCTG GAAGTCATCA TCACAAGAAC ATCTATCTCA AATTACTTAA -CTAGGAATG 110 TCTAAGAAGC TAAAATACAT AAACAGCTAG TCCATGCCGG AACATCAAGG CATCAAGACA 35656 |||||||| | |||||| | ||| |||||| |||||||||| || |||||| ||||||||| TCTAAGAA-C -AAAATAACT AAAAAGCTAG TCCATGCCGG AAATTCAAGG CATCAAGACT 168 TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CTTTAGCTCA CCCTGAA--A TCTGGTGTGA 35598 |||||||||| || ||||||| |||||||| | | |||||||| ||||||| || | || TGAAGAAGAA GACCCAGTCC AAGCTAGACG CATTAGCTCA CCCTGAATTT TCCGATGAAG 228 TGAAGACTGG CTAGAGTTGC GGTTGGATTG AAGACGACGA TACGTTTGCT GCACTCCACA 35538 |||||||||| ||||| | | |||| ||| ||| |||| ||||||||| ||| | |||| TGAAGACTGG CTAGATCTAC TGTTGAGTTG AAGTTGACGG AACGTTTGCT GCATTACACA 288 ATGAACAAA- AAGAAAACAT ACAAGTAGGG GTCAGTAGAA AACACGAGTA CTGAGTAGAT 35479 | |||||| | |||||||| |||||||| ||||||| | | ||| ||| |||||||||| AATAACAAAG AGGAAAACAT GAAAGTAGGG GTCAGTA-CA ACCACACGTA CTGAGTAGAT 347 ATCATCGGCC AACTCAAAAT AGAAAACAGT ATATATCAGA TAATATCATA AAATCAACTA 35419 |||||||||| |||||||||| || |||||| |||||||| | ||||| | |||||||||| ATCATCGGCC AACTCAAAAT AGGGAACAGT ATATATCA-A TAATAATGT- AAATCAACTA 405 CAGTACTTAA CATGCAACAT TTACAATTAC CATAACCCTT GGTCA-TAAC ACCAATCTCA 35360 || |||| || |||| | || | || | | | | | | | | || ||| | ||| CAATACTCAA CATGTAGCAA TAAC-ACCAT GA-ATTCATC AATAACTACA ACCGAGTTCA 463 TCAATGAGGA CTCACGCCTC CCCATCATAC TCATTTGAGA ATTAGGTTCA TTAAATTAAG 35300 ||||||| |||| ||||| | ||||| ||||||| || |||| ||||| ||| ||| || CACATGAGGA CTCAAGCCTC AATACCATAC TCATTTGGGA ATTAAGTTCA TTAGATTGAG 523 TATATT-AAC ATATTTCAAG ATTCATTCTC TTTACTAATC CTGGTGCCGG AACGTGACAC 35241 |||||| | || ||||||| ||||||| || ||| || || ||| ||| ||||||||| TATATTCATT ATCTTTCAAG ATTCATTATC TTT-CTTCCT CTTGTGTCGG TACGTGACAC 582 TCCGATCCTC ATATACTATC CTGGTACCGG ACGTGGCACC CGATCCATAT ACTATCCTGG 35181 |||||||||| ||| TCCGATCCTC -TAT...... .......... .......... .......... .......... 595 TGTCGGAACG TGACACTCCG ATCCTCATAT ACTATCCTGG TACCGGAACG TGGCACCCGA 35121 .......... .......... .......... .......... .......... .......... 595 TCCATATACT ATCCTGGTGT CGGAACGTGA CACCCGATCC ATATACTATC CTGGTGTCGG 35061 | ||||| |||||| ||| .......... .......... .......... .......... ...TTCTATC CTGGTGCCGG 612 AACGTGACAC TCCGATCCTC ACATACTATC CTGGTACCGG AACGTGGCAC CCGATCCATA 35001 |||||| ||| ||||||||| ||| ||||| |||||||||| |||||||||| ||||||||| AACGTGGCAC TCCGATCCT- -CATTCTATC CTGGTACCGG AACGTGGCAC CCGATCCATT 670 TACTATCCTG GTGTCGAAAC GTGACACTCC GATCCTCATA TACTATCCTG GTACCGGAAC 34941 | |||||||| |||||| ||| |||||||||| |||||||||| | |||||||| |||||||||| TTCTATCCTG GTGTCGGAAC GTGACACTCC GATCCTCATA TTCTATCCTG GTACCGGAAC 730 hqPGS_C04HBa0077O05.1-_SGN-E546506+ (36555 36521,35789 35227,35077 34941) ******************************************************************************** EST sequence 1 -strand 605 n (File: SGN-E347579-) 1 ATCCCCTAAT TCTACGTGTC GGTTCGTGAC ACCCGATCCC CTAATTCTAC GTGTCGGTTC 61 GTGACACCTG ATCCCCTAAT CTACGTGCCG GTTCGTGACA CCCGATCCCC TAATTCTACG 121 TGCCAGTTCG TGACACCCGA TCCCCTAATT CTACGTGTCG GTTCGTGACA CCCGATCCCC 181 TGCATGTGTC GGTACGTGAC ACTCCGATCC ACTAATATCA TTCTGTAAAT CATCAGGCCT 241 TCTCTATACC AAGGCATCAT CAATCCCATT ACTTTTATTC ATCAAGCCTT CTTCTATACC 301 AAGGCATCAT CATTAATAAG AGATTAGATT TTTATCAAGA TTTGGGATTC AATAACTTCA 361 TCATGCTTAA TATAATCACA ATTATATAAT CACGTTCATG CATGCATACA ATTAAGCATA 421 TAGCAGGGTT TACAATACTA CCAATACATA TCATTCTCTA TTAAGAGTTT ACTATGAAAG 481 CATGAAAACC ATAACCTACC TCCACCGAAG ATTAGTGATC AAGCAAGCAA ATTTTTCTCC 541 AAGCTTTGTT TCTCCCTTCT CGTTCGATTC TTCCTCTCTC TCTTGTTCTT TCTATTTTCT 601 TTATT Predicted gene structure (within gDNA segment 39755 to 33332): Exon 1 35266 34991 ( 276 n); cDNA 6 261 ( 256 n); score: 0.656 Intron 1 34990 34924 ( 67 n); Pd: 0.000 (s: 0.46), Pa: 0.000 (s: 0.88) Exon 2 34923 34581 ( 343 n); cDNA 262 605 ( 344 n); score: 0.838 MATCH C04HBa0077O05.1- SGN-E347579- 0.757 619 1.023 C PGS_C04HBa0077O05.1-_SGN-E347579- (35266 34991,34923 34581) Alignment (genomic DNA sequence = upper lines): CTAATCCT-G GTGCCGGAAC GTGACACTCC GATCCTCATA TACTATCCTG GTACCGGACG 35208 ||||| || ||| ||| | ||||||| || ||||| | | | ||| | | || | | || CTAATTCTAC GTGTCGGTTC GTGACAC-CC GATCCCCTAA TTCTA-CGT- GT-CGGTTCG 61 TGGCACCCGA TCCATATACT ATCCTGGTGT CGGAACGTGA CACTCCGATC CTCATATACT 35148 || |||| || ||| || | | | ||| ||| ||||| ||| |||||| | | || || TGACACCTGA TCC-CCTAAT CTAC--GTGC CGGTTCGTGA CAC-CCGATC CCCTAATTCT 117 ATCCTGGTAC CGGAACGTGG CACCCGATCC ATATACTATC CTGGTGTCGG AACGTGACAC 35088 | | || | | | |||| |||||||||| || | || ||||||| |||||||| A-C---GTGC CAGTTCGTGA CACCCGATCC -CCTAAT-TC TACGTGTCGG TTCGTGACAC 171 CCGATCCATA TACTATCCTG GTGTCGGAAC GTGACACTCC GATCCTCACA TACTATCCTG 35028 ||||||| || | | ||||||| || |||||||||| ||||| | | || || || CCGATCC--- -CCT-GCAT- GTGTCGGTAC GTGACACTCC GATCCACTAA TATCATTCT- 224 GTACCGGAAC GTGGC-ACCC GATCCATATA CTATCCTGGT GTCGAAACGT GACACTCCGA 34969 ||| | | | | | | || | | | ||| | GTAAATCATC AGGCCTTCTC TATACCAAGG C-ATCATC.. .......... .......... 261 TCCTCATATA CTATCCTGGT ACCGGAACGT GGCACCCGAT CCCCTAATCT CACTACTTTC 34909 |||| || |||||| .......... .......... .......... .......... .....AATCC CATTACTTTT 276 GTTCATCAAG CCTTCTTTTA TACCAAGACA TCATCATTAA CAAAGTAGAT TAGGGCTTT- 34850 ||||||||| ||||||| || ||||||| || |||||||||| ||| |||| ||| ||| ATTCATCAAG CCTTCTTCTA TACCAAGGCA TCATCATTAA -TAAG-AGAT TAGATTTTTA 334 TCAAGATTTA GGATTCAATA GCTTCATCAT GCTT-AT-TC ATCACAATTA TATAATCGC- 34793 ||||||||| |||||||||| ||||||||| |||| || | |||||||||| ||||||| | TCAAGATTTG GGATTCAATA ACTTCATCAT GCTTAATATA ATCACAATTA TATAATCACG 394 ATCATGTAAG CATACAATTA ATCACATAGA AGGGTTTACA ACACTACCCA ATACATATCA 34733 ||||| | | |||||||||| | || |||| |||||||||| | |||| ||| |||||||||| TTCATGCATG CATACAATTA AGCATATAGC AGGGTTTACA ATACTA-CCA ATACATATCA 453 TTCGCTATTA AGAGTTTACT ACGAATAGTA TAAAAACCAT AACCTACCTC CACCGAAGAT 34673 ||| |||||| |||||||||| | ||| || | | |||||||| |||||||||| |||||||||| TTCTCTATTA AGAGTTTACT ATGAA-AGCA TGAAAACCAT AACCTACCTC CACCGAAGAT 512 TAGTGATCAA GCAAGCAAA- -TTCCCCAAA GCTTTGTGTT TTCCTCTTCT CGTTCGATCC 34615 |||||||||| ||||||||| || | | || ||||||| || ||| ||||| |||||||| | TAGTGATCAA GCAAGCAAAT TTTTCTCCAA GCTTTGT-TT CTCC-CTTCT CGTTCGATTC 570 TCTCTCTCTC T-TTGTTCTT TCTATTTTCT TTATT 34581 | ||||||| | |||||||| |||||||||| ||||| TTCCTCTCTC TCTTGTTCTT TCTATTTTCT TTATT 605 hqPGS_C04HBa0077O05.1-_SGN-E347579- (34923 34581) ******************************************************************************** EST sequence 144 -strand 725 n (File: SGN-E546548-) 1 GGTACCGGAA CGTGGCACCC GATCCATATT CTATCCTGGT GTCGGAACGT GACACTCCGA 61 TCCTCATATT CATTCTATCC TGGTACCGGA ACGTGGCACC CGATCCCCTA ATCCATCAAG 121 CCTTCTTTTA CACTAAGGCA TCATCATTCT CATTATATAA TTTATCAAGC CTTCTTTCAT 181 ACTAAGGCAT CATCATTCTC ATTATATAAT ATATCAAGCG AATTAGGGTT CTTTCAAGAT 241 TTGGGATTCA ATTGCTTCAT CATGCTTTGT TAATTCATCG CAATTTCATA ATCATAATCA 301 TGCAAGCATA CAACTTAAGC ACATAGCAGG GTTTACAATA CTATCAACAC ATAATATTCA 361 CTATTAAGAG TTCACTACGA ATATCGTAAC ATAAACCATA ACCTACCTCC ACCGAAGAAT 421 TGAATCAACA AGCTATCTTC TCAAAATCCT TGCTATCCTC TTCGTTTCTC TCTCTCTACT 481 CGTTCGTTTC TCCTCTCTTT CTGTTCTTTT CTTTTGTTTT GTTTTATTCA AACCCTCCTT 541 CTTTTTACCC TAATTAAAAG TATAATTAAG TGTAAAGGAG GACAATAAAA CCCACTAATT 601 AACTTAAGGT TACCTCTTTT AACCCCCAAG TAATTAGACC TATTAATATT AACCCTCAAT 661 CTTTATAATT AAGGAAAGAA TAGTCCAAAA CGACCCCTAA AACGTGTAGA GGAATCCTAT 721 TTTGC Predicted gene structure (within gDNA segment 35925 to 28238): Exon 1 35218 35118 ( 101 n); cDNA 1 106 ( 106 n); score: 0.866 Intron 1 35117 35012 ( 106 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0.46) Exon 2 35011 34957 ( 55 n); cDNA 107 161 ( 55 n); score: 0.491 Intron 2 34956 34925 ( 32 n); Pd: 0.000 (s: 0.48), Pa: 0.000 (s: 0.52) Exon 3 34924 34386 ( 539 n); cDNA 162 725 ( 564 n); score: 0.662 MATCH C04HBa0077O05.1- SGN-E546548- 0.678 695 0.959 C PGS_C04HBa0077O05.1-_SGN-E546548- (35218 35118,35011 34957,34924 34386) Alignment (genomic DNA sequence = upper lines): GGTACCGGA- CGTGGCACCC GATCCATATA CTATCCTGGT GTCGGAACGT GACACTCCGA 35160 ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| GGTACCGGAA CGTGGCACCC GATCCATATT CTATCCTGGT GTCGGAACGT GACACTCCGA 60 TCCTCATA-T -A--CTATCC TGGTACCGGA ACGTGGCACC CGATCCATAT ACTATCCTGG 35104 |||||||| | | |||||| |||||||||| |||||||||| |||||| TCCTCATATT CATTCTATCC TGGTACCGGA ACGTGGCACC CGATCC.... .......... 106 TGTCGGAACG TGACACCCGA TCCATATACT ATCCTGGTGT CGGAACGTGA CACTCCGATC 35044 .......... .......... .......... .......... .......... .......... 106 CTCACATACT ATCCTGGTAC CGGAACGTGG CACCCGATCC ATATACTATC CTGGTGTCGA 34984 || |||| || | | || | .......... .......... .......... ..CCTAATCC ATCAAGCCTT CTTTTACACT 134 AACGTGACAC TCCGATCCTC ATATACTATC CTGGTACCGG AACGTGGCAC CCGATCCCCT 34924 || | || || | ||||| | | AAGGCATCAT CATTCTCATT ATATAAT... .......... .......... .........T 162 AATC-TCACT ACTTTCGTTC ATCAAGCCTT CTTTTATACC AAGACATCAT CATTAACAAA 34865 ||| || ||||| | | | ||| | | | | | | | | || || | || | || TATCAAGCCT TCTTTCATAC -T-AAGGCAT CATCATTCTC ATTATATAAT -A-TATC-AA 217 GTAGATTAGG GCT-TTTCAA GATTTAGGAT TCAATAGCTT CATCATGC-T T----ATTCA 34811 | |||||| | | |||||| ||||| |||| ||||| |||| |||||||| | | ||||| GCGAATTAGG GTTCTTTCAA GATTTGGGAT TCAATTGCTT CATCATGCTT TGTTAATTCA 277 TCACAATTAT ATAATCGC-A TCATGTAAGC ATACAA-TTA ATCACATAGA AGGGTTTACA 34753 || ||||| |||||| | ||||| |||| |||||| ||| | ||||||| |||||||||| TCGCAATTTC ATAATCATAA TCATGCAAGC ATACAACTTA AGCACATAGC AGGGTTTACA 337 ACACTACCCA ATACATATCA TTCGCTATTA AGAGTTTACT ACGAATA--G T-ATAAAAAC 34696 | |||| || | ||||| | ||| |||||| |||||| ||| ||||||| | | | | |||| ATACTA-TCA ACACATAATA TTCACTATTA AGAGTTCACT ACGAATATCG TAACATAAAC 396 CATAACCTAC CTCCACCGAA G-ATT-AGTG ATCAAGC-A- ---AGCAAAT TCC--CCAAA 34645 |||||||||| |||||||||| | ||| | | | ||||| | |||| ||| | | CATAACCTAC CTCCACCGAA GAATTGAATC AACAAGCTAT CTTCTCAAAA TCCTTGCTAT 456 GCT-TT-GTG T-TTTC-CTC TTCTCGTTCG ATCCT-CTCT CTCTCT-TTG TTCT-TTCTA 34592 || || || | | || ||| | |||||||| | || |||| || ||| || || | || | CCTCTTCGTT TCTCTCTCTC TACTCGTTCG TTTCTCCTCT CTTTCTGTTC TTTTCTTTTG 516 TTTT-CTTTA TTCAAACCCT CTTTC-TTTT ACCCTAATTA GCA-TATAAT TAAGAATAAA 34535 |||| |||| |||||||||| | ||| |||| |||||||||| | |||||| |||| |||| TTTTGTTTTA TTCAAACCCT CCTTCTTTTT ACCCTAATTA AAAGTATAAT TAAGTGTAAA 576 AGATGGCAAT AATAACCCAC TAATTTACTC AAGGTTACCT CTTTTAACCC CCAAGTAATT 34475 || | |||| || ||||||| ||||| ||| |||||||||| |||||||||| |||||||||| GGAGGACAAT AA-AACCCAC TAATTAACTT AAGGTTACCT CTTTTAACCC CCAAGTAATT 635 AGACTTATTA ACATTAACCC ACTAACTTTA TAATTAAAAC AGGAATAGTC AAAAACTTCC 34415 |||| ||||| | |||||||| | | ||||| ||||||| | |||||||| ||||| || AGACCTATTA ATATTAACCC TCAATCTTTA TAATTAAGGA AAGAATAGTC CAAAACGACC 695 TTTAAAACAT -TAAAGAAAT CCGACTCAGC 34386 |||||| | || || ||| || | | || CCTAAAACGT GTAGAGGAAT CCTATTTTGC 725 hqPGS_C04HBa0077O05.1-_SGN-E546548- (35218 35118) ******************************************************************************** EST sequence 120 -strand 481 n (File: SGN-E246710-) 1 AGTCCAAGCT AGAAGCATTA GCTCACCCTG AATTTCCGAT GTAGTAAGAC TGGCTTGAAT 61 TACTGTTGAG TTGAACACGA TGGCACGTTT GCTGCACTCC ACAAATAAAC AAGAAGAGAA 121 CATAAAAGTA GGGGTCAGTA CAAAACACGG GTACTGAGTA GATATCATCG GCCAACTCAA 181 AATAGAAATC AATATATATA CCAAGTAATA TCATAAAATC AACTATGATA CTCAACATGT 241 AGCAACAACA AATACTATAT CATTAACAAT TACCGTCAAG TTCACACATG AGGACTCAAG 301 CCTCAATACC ATACTCATTT GGGAATCATG TTCATTAGAT TGAGTATATT AACATCTTTC 361 AAGATTCATT ATCTTTATTT CTCTTGTGTC GGTACGTGAC ACTCCGCTCC CTCAATATTC 421 ATTAATCCTC TTGTGTCGGT ACGTGACACT CCGATCCCCT AAATCTATAT GTCGGTTTGT 481 G Predicted gene structure (within gDNA segment 37601 to 32259): Exon 1 35640 35237 ( 404 n); cDNA 1 406 ( 406 n); score: 0.792 MATCH C04HBa0077O05.1- SGN-E246710- 0.792 404 0.840 C PGS_C04HBa0077O05.1-_SGN-E246710- (35640 35237) Alignment (genomic DNA sequence = upper lines): AGTCCAAGCT AGAAGCTTTA GCTCACCCTG AA-ATCTGGT GTGATGAAGA CTGGCTAGAG 35582 |||||||||| |||||| ||| |||||||||| || || | | || | |||| |||||| || AGTCCAAGCT AGAAGCATTA GCTCACCCTG AATTTCCGAT GT-AGTAAGA CTGGCTTGAA 59 TTGCGGTTGG ATTGAAGACG ACGATACGTT TGCTGCACTC CAC-AATGAA CAAAAAGAAA 35523 || | |||| ||||| ||| | | ||||| |||||||||| ||| ||| || ||| |||| | TTACTGTTGA GTTGAACACG ATGGCACGTT TGCTGCACTC CACAAATAAA CAAGAAGAGA 119 ACATACAAGT AGGGGTCAGT AGAAAACACG AGTACTGAGT AGATATCATC GGCCAACTCA 35463 ||||| |||| |||||||||| | |||||||| ||||||||| |||||||||| |||||||||| ACATAAAAGT AGGGGTCAGT ACAAAACACG GGTACTGAGT AGATATCATC GGCCAACTCA 179 AAATAGAAAA CAGTATATAT --CAGATAAT ATCATAAAAT CAACTACAGT ACTTAACATG 35405 ||||||||| || ||||||| || |||| |||||||||| |||||| | ||| |||||| AAATAGAAAT CAATATATAT ACCAAGTAAT ATCATAAAAT CAACTATGAT ACTCAACATG 239 CAACATTTAC AATTACCATA ACCCTTGGTC ATAACACCAA TCTCATCAAT GAGGACTCAC 35345 | || || || ||| ||| | | || | ||| ||| || ||||||||| TAGCAACAAC AAATACTATA TCATTAACAA TTACCGTCAA GTTCACACAT GAGGACTCAA 299 GCCTCCCCAT CATACTCATT TGAGAATTAG GTTCATTAAA TTAAGTATAT TAACATATTT 35285 ||||| | |||||||||| || |||| | |||||||| | || ||||||| |||||| ||| GCCTCAATAC CATACTCATT TGGGAATCAT GTTCATTAGA TTGAGTATAT TAACATCTTT 359 CAAGATTCAT TCTCTTTACT AATCCTGGTG CCGGAACGTG ACACTCCG 35237 |||||||||| | |||||| | | || ||| ||| ||||| |||||||| CAAGATTCAT TATCTTTATT TCT-CTTGTG TCGGTACGTG ACACTCCG 406 hqPGS_C04HBa0077O05.1-_SGN-E246710- (35640 35237) ******************************************************************************** EST sequence 151 -strand 236 n (File: SGN-E209683-) 1 CACAAATAAC AAGAAGATAA ACATAAAAGT AGGGGTCAGT ACAAACCACG GGTACTGAGT 61 AGATATCATC GGCCAACTCA AAATAGGGAA CAGTATGTAT TAAGCAATAT CATAAAATCA 121 ACTAATATCC TTAACATGCA GCATTTATAG TTACCATAAC CCTTGGTTAC AACACCAAGC 181 ACATCAATGA GGACTCACAC CTCCTCATCA TACTCATTTG GGAATTTAGT TCATTA Predicted gene structure (within gDNA segment 36611 to 34365): Exon 1 35541 35307 ( 235 n); cDNA 1 236 ( 236 n); score: 0.862 MATCH C04HBa0077O05.1- SGN-E209683- 0.862 235 0.996 C PGS_C04HBa0077O05.1-_SGN-E209683- (35541 35307) Alignment (genomic DNA sequence = upper lines): CACAATGAAC AAAAAGA-AA ACATACAAGT AGGGGTCAGT AGAAAACACG AGTACTGAGT 35483 ||||| ||| || |||| || ||||| |||| |||||||||| | ||| |||| ||||||||| CACAAATAAC AAGAAGATAA ACATAAAAGT AGGGGTCAGT ACAAACCACG GGTACTGAGT 60 AGATATCATC GGCCAACTCA AAATAGAAAA CAGTATATAT CAGATAATAT CATAAAATCA 35423 |||||||||| |||||||||| |||||| || |||||| ||| | ||||| |||||||||| AGATATCATC GGCCAACTCA AAATAGGGAA CAGTATGTAT TAAGCAATAT CATAAAATCA 120 ACTACAGTAC TTAACATGCA ACATTTACAA TTACCATAAC CCTTGGTCAT AACACCAATC 35363 |||| | | |||||||||| |||||| | |||||||||| ||||||| | |||||||| | ACTAATATCC TTAACATGCA GCATTTATAG TTACCATAAC CCTTGGTTAC AACACCAAGC 180 TCATCAATGA GGACTCACGC CTCCCCATCA TACTCATTTG AGAATTAGGT TCATTA 35307 ||||||||| |||||||| | |||| ||||| |||||||||| ||||| || |||||| ACATCAATGA GGACTCACAC CTCCTCATCA TACTCATTTG GGAATTTAGT TCATTA 236 hqPGS_C04HBa0077O05.1-_SGN-E209683- (35541 35307) ******************************************************************************** EST sequence 124 -strand 580 n (File: SGN-E356206-) 1 GAAAAGTAAA AGCGTCCCCN TACCGTCCCT TAAGACTCTA CTAGACTTGT TCTTGTGTGA 61 TGAGACCAAC GACCCTAATG CTCTGATACC AAGTTTTGTC ACGACCCAAA TCCGGGCCGC 121 CACTGGCACC CACACTTACC CTCCTATGTG AGCGAACCAA CCAATCTAAA CCTTAACATT 181 TCAATGTAAT AGCAACAGAA AGTAATGCGG AAGACTTAAA CTCATTAATA AAATCAATAA 241 CTACTATTAT TAAACATCTA TTATTCCCAA AACCTGGAAG TCATCATCAC AAGAACATCT 301 ACTTTAAACT ACTAATTCTA AGAGTTTCTA AGAAGCTAAA AAATTACATA AGAAGCTAGT 361 CCATGCCGGA AGTTCAAGGC ATCAAGACAT GAAGGAGAAG ATCCAGTCCA AGCTAGAAGC 421 GTTAGCTCAC CCTGAAGATC CGGTGTGACG AAGACTGGCT TGAGTTACTG TTGAGTCGAA 481 GATGACGGCA CGTTTGCTGC ACTCCACAAA TAACAAGAAG AAAAACATAA AAGTAGGGGT 541 CAGTACAAAA CACGGCTACT GAGTAGATAT CATCGGCCAA Predicted gene structure (within gDNA segment 38995 to 33425): Exon 1 37972 37958 ( 15 n); cDNA 87 100 ( 14 n); score: 0.667 Intron 1 37957 35951 (2007 n); Pd: 0.453 (s: 0), Pa: 0.000 (s: 0.87) Exon 2 35950 35467 ( 484 n); cDNA 101 580 ( 480 n); score: 0.864 MATCH C04HBa0077O05.1- SGN-E356206- 0.864 499 0.860 C PGS_C04HBa0077O05.1-_SGN-E356206- (37972 37958,35950 35467) Alignment (genomic DNA sequence = upper lines): TACCTACTCT TGGTGGCATG TTTATTACGT TTTACGTTGG AACTAAGGTG ACTCTCTAGA 37913 |||| | | | || | TACCAAGTTT TG-TC..... .......... .......... .......... .......... 100 TATTTCCAAT GATTTACTTT TGAATTTCTC AATGCATGTT CATTATGATT TGAATTTAAG 37853 .......... .......... .......... .......... .......... .......... 100 AGAACAGTGT AGTTTTGAAT CCTGGCTGCG TATTAATCAT GATCTGAATC TGATAATGCA 37793 .......... .......... .......... .......... .......... .......... 100 GCTCATGTTT TATATCTCTG ATGCCAAGAA AAAACACATC CACAGCAGAT GACACACAGG 37733 .......... .......... .......... .......... .......... .......... 100 TTCATTCCTG GGCAAACAGA ACAGAAACAA CATGATACAA AATCCATTAG CATCTCATGA 37673 .......... .......... .......... .......... .......... .......... 100 GGAAGACCCC CATCAGTAGA TAGTAGTTGG TCTCTTTTGA GGAATTCATT TTCACCTTGA 37613 .......... .......... .......... .......... .......... .......... 100 ATTAATCCCT CAACCAACTA CACCTCTATA ACTAGTTAAG AGTTTTTTTT GTTCCTGTTC 37553 .......... .......... .......... .......... .......... .......... 100 TTTTTATCCC ACACTACTTG CAGTTGACTA AGAGCCCATT TGGAAGGTTA CTTTGTAGTA 37493 .......... .......... .......... .......... .......... .......... 100 TGGTATAATA ATAGAAGTGC ACCAAGTTTA CTTGCTTTGG GCAAAAGGTC AGAAACTGGC 37433 .......... .......... .......... .......... .......... .......... 100 ACATGAAACT TGATAACTTC AAACATTCGC GTCTGCAAGT GTGGCCTTGT TTTAAGTGCA 37373 .......... .......... .......... .......... .......... .......... 100 TTGTCTAGGT CTTCTATATA TAAGTCATCA ACATCTTCTT CAACTAGACC TCTAGTCTCG 37313 .......... .......... .......... .......... .......... .......... 100 CGTACTGCAA CAAGTGTCAA TAGAGAAGTA CTCAATACAG ATCCTTGGCC AGTAAAACCA 37253 .......... .......... .......... .......... .......... .......... 100 ACATATATAG AATGTCAAAG GGTAAAATCT TGAGAATAAT GAAAAGACAC ATGTACTAGA 37193 .......... .......... .......... .......... .......... .......... 100 ATGGCAAGAA CATTCACAAA AGATTGACAC TCTCACGACT TTGATAAACA AAATGGATCT 37133 .......... .......... .......... .......... .......... .......... 100 AGCAAGTAAT AACAACACCA TCATTTTTAA TCCCTCTTAA ACAAAGCGAG CTACTAATAT 37073 .......... .......... .......... .......... .......... .......... 100 ATAATAGATA TGGATGTTAC ATTCATGAAG CTGGCATTGG AAAGGGGATT TAATAATAGC 37013 .......... .......... .......... .......... .......... .......... 100 ATACACAGTT TCTGTGAACT GCAACACTAA CAACCTGACA GAAACAAGAC TGCTAGACAT 36953 .......... .......... .......... .......... .......... .......... 100 TGCTTTAGAG AGGCTAACCA AGTTGTGGAT ACCCTAAGTA TGCCTCTTCA CACAATGTGT 36893 .......... .......... .......... .......... .......... .......... 100 GTGTGTCTAC ATTTCAAGAG CTTTCCAAAG ATTCACAAGG CCCTTACCGA CCATACAAAG 36833 .......... .......... .......... .......... .......... .......... 100 TGCAACTTCC TAGTATTAGA ATCAAAGCTA ACTTTTTTTG TGAGTTAATT TCGTGTGTCT 36773 .......... .......... .......... .......... .......... .......... 100 TGTAGTTTGT AGAATAGATT AGGCTGGAAT GCCTAATCCT ACTCTCTATC ATTTTGACTG 36713 .......... .......... .......... .......... .......... .......... 100 GTTTGGGTTA TTAGTTGAAT GTCATATTTG AAGGGCACAT TGAAATTTCG TGGGACGCTA 36653 .......... .......... .......... .......... .......... .......... 100 TTATAGAATA GATTTGGAAG TGTATATGGA ATTTTGATTT TGTTATAGTT AGTATGTATT 36593 .......... .......... .......... .......... .......... .......... 100 TTTGTATTTC ATAAATTTAT TATGTTTTGC ATTCTGATTT TTTTTTTTGT GTTAGTTATG 36533 .......... .......... .......... .......... .......... .......... 100 TCAATGTAAC ACATTATACG TTTGATTGTG TTATTTACTA TAATAGAATA GATTTTTAAG 36473 .......... .......... .......... .......... .......... .......... 100 TGTATATGAA ATTTTGATTC TGTTATAGTT GGTATGTATT TTTATATTTC ATAGATTTAA 36413 .......... .......... .......... .......... .......... .......... 100 TGTATTTTGT ATTCATAGAT TTGAAAGTGT ATATGAAATT TTGATTCTAT TATAGTTAAT 36353 .......... .......... .......... .......... .......... .......... 100 ATGTATTTCA TAGATTTAAT GTATTTATAT TCTGTTTTTT TTTGTTGAGT TAGTTATGTC 36293 .......... .......... .......... .......... .......... .......... 100 GATGTTGAGA GTTTTAAACA TTTGCTACTT TTTAAAAATT TTATCTCCCC TAAATAGCTT 36233 .......... .......... .......... .......... .......... .......... 100 CTGTTTGTTA CATAAATTCT ATATTCTTTT TAATTAAACC AAATAATTAT AATATAATTA 36173 .......... .......... .......... .......... .......... .......... 100 ACATACATAA TAAAGTAAAA TTTTGATATT ATCACTAAAT ATTGAAACTA CTGATACAAT 36113 .......... .......... .......... .......... .......... .......... 100 AACCTATTAA ATACTAAAAT ATTGACATTT TAAAAAAATT TCCGTTATTA ATTCCAACAA 36053 .......... .......... .......... .......... .......... .......... 100 AAAGAATAAG TGGAAAAAAA ACATAAATAG CTAACTTTCT GAAAAATAAT TGCAAAACTA 35993 .......... .......... .......... .......... .......... .......... 100 TAGCAGCATT GATCCACTAT CATTTTATTG CATATAAATG TCACGATCCA AAT-CGGGTC 35934 |||| ||| ||| |||| | .......... .......... .......... .......... ..ACGACCCA AATCCGGGCC 118 GCGACTGACA CCCACACTTA CCCTCCTATG TGAGCGAACC AACCAATCTA AACCTTAACA 35874 || |||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCACTGGCA CCCACACTTA CCCTCCTATG TGAGCGAACC AACCAATCTA AACCTTAACA 178 TTTCAATATA ATATCAACAG AAAGTAATGC GGAAGACTTA AACTCATTAA TAAAAACCAA 35814 ||||||| || ||| |||||| |||||||||| |||||||||| |||||||||| | || || TTTCAATGTA ATAGCAACAG AAAGTAATGC GGAAGACTTA AACTCATTAA T---AA--AA 233 TTCAATAACT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGA AGTCATCATC 35754 ||||||||| || | | | |||| |||| || | | ||| |||| ||||| |||||||||| -TCAATAACT ACT-ATTATT AAACATCTAT TA-T-T-CCC AAAACCTGGA AGTCATCATC 288 ACAAGAACAT CTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCT- -AAAA-TACA 35697 |||||||||| |||||| ||| |||||| || ||||||| || ||||||||| |||| |||| ACAAGAACAT CTACTTTAAA CTACTAATTC TAAGAGTTTC TAAGAAGCTA AAAAATTACA 348 TAAACAGCTA GTCCATGCCG GAACATCAAG GCATCAAGAC ATGAAGAAGA AGATCCAGTC 35637 ||| ||||| |||||||||| ||| ||||| |||||||||| |||||| ||| |||||||||| TAAGAAGCTA GTCCATGCCG GAAGTTCAAG GCATCAAGAC ATGAAGGAGA AGATCCAGTC 408 CAAGCTAGAA GCTTTAGCTC ACCCTGAA-A TCTGGTGTGA TGAAGACTGG CTAGAGTTGC 35578 |||||||||| || ||||||| |||||||| | || ||||||| ||||||||| || ||||| | CAAGCTAGAA GCGTTAGCTC ACCCTGAAGA TCCGGTGTGA CGAAGACTGG CTTGAGTTAC 468 GGTTGGATTG AAGACGACGA TACGTTTGCT GCACTCCACA ATGAACAAAA AG-AAAACAT 35519 |||| | | |||| |||| ||||||||| |||||||||| | ||||| | || ||||||| TGTTGAGTCG AAGATGACGG CACGTTTGCT GCACTCCACA AATAACAAGA AGAAAAACAT 528 ACAAGTAGGG GTCAGTAGAA AACACGAGTA CTGAGTAGAT ATCATCGGCC AA 35467 | |||||||| ||||||| || |||||| || |||||||||| |||||||||| || AAAAGTAGGG GTCAGTACAA AACACGGCTA CTGAGTAGAT ATCATCGGCC AA 580 hqPGS_C04HBa0077O05.1-_SGN-E356206- (35950 35467) ******************************************************************************** EST sequence 66 -strand 729 n (File: SGN-E351546-) 1 AGTCGTTGCT CTAGTTCTAC CCATCTGGCA AGAGAGTGAG NATGGTCAGA TACCAATTCG 61 TATCGCTTAG ATACCAATTG ACTCGAAGTA GTAGCACGAA AGAAAGAATG AAAGAGTGAA 121 GTTTTCCTAA AGTCTTATAG CCTCTCAAGG AAAAGTAAAA GCGTCCCCCT ACCGTTCCTT 181 AAGACTCTAC TAGACTTGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 241 AGTTTTGTCA CGACCCAAAT CCGGGCCGCC ACTGGCACCC ACACTTACCC TCCTATGTGA 301 GCGAACCAAC CAATCTAAAC CTTAACATTT CAATGTAATA GCAACAGAAA GTAATGCGGA 361 AGACTTAAAC TCATTAATAA AATCAATAAC TACTATTATT AAACATCTAT TATTCCCAAA 421 ACCTGGAAGT CATCATCACA AGAACATCTA CTTTAAACTA CTAATTCTAA GAGTTTCTAA 481 GAAGCTAAAA AATTACATAA GAAGCTAGTC CATGCCGGAA GTTCAAGGCA TCAAGACATG 541 AAGGAGAAGA TCCAGTCCAA GCTAGAAGCG TTAGCTCACC CTGAAGATCC GGTGTGACGA 601 AGACTGGCTT GAGTTACTGT TGAGTCGAAG ATGACGGCAC GTTTGCTGCA CTCCACAAAT 661 ACCAAGAAGA AAAACATAAA AGTAGGGGTC AGTACAAAAC ACGGCTACTG AGTAGATATC 721 ATCGGCCAA Predicted gene structure (within gDNA segment 39285 to 33425): Exon 1 37972 37958 ( 15 n); cDNA 236 249 ( 14 n); score: 0.667 Intron 1 37957 35951 (2007 n); Pd: 0.453 (s: 0), Pa: 0.000 (s: 0.87) Exon 2 35950 35467 ( 484 n); cDNA 250 729 ( 480 n); score: 0.862 MATCH C04HBa0077O05.1- SGN-E351546- 0.862 499 0.684 C PGS_C04HBa0077O05.1-_SGN-E351546- (37972 37958,35950 35467) Alignment (genomic DNA sequence = upper lines): TACCTACTCT TGGTGGCATG TTTATTACGT TTTACGTTGG AACTAAGGTG ACTCTCTAGA 37913 |||| | | | | || TACCAAGT-T TTGTC..... .......... .......... .......... .......... 249 TATTTCCAAT GATTTACTTT TGAATTTCTC AATGCATGTT CATTATGATT TGAATTTAAG 37853 .......... .......... .......... .......... .......... .......... 249 AGAACAGTGT AGTTTTGAAT CCTGGCTGCG TATTAATCAT GATCTGAATC TGATAATGCA 37793 .......... .......... .......... .......... .......... .......... 249 GCTCATGTTT TATATCTCTG ATGCCAAGAA AAAACACATC CACAGCAGAT GACACACAGG 37733 .......... .......... .......... .......... .......... .......... 249 TTCATTCCTG GGCAAACAGA ACAGAAACAA CATGATACAA AATCCATTAG CATCTCATGA 37673 .......... .......... .......... .......... .......... .......... 249 GGAAGACCCC CATCAGTAGA TAGTAGTTGG TCTCTTTTGA GGAATTCATT TTCACCTTGA 37613 .......... .......... .......... .......... .......... .......... 249 ATTAATCCCT CAACCAACTA CACCTCTATA ACTAGTTAAG AGTTTTTTTT GTTCCTGTTC 37553 .......... .......... .......... .......... .......... .......... 249 TTTTTATCCC ACACTACTTG CAGTTGACTA AGAGCCCATT TGGAAGGTTA CTTTGTAGTA 37493 .......... .......... .......... .......... .......... .......... 249 TGGTATAATA ATAGAAGTGC ACCAAGTTTA CTTGCTTTGG GCAAAAGGTC AGAAACTGGC 37433 .......... .......... .......... .......... .......... .......... 249 ACATGAAACT TGATAACTTC AAACATTCGC GTCTGCAAGT GTGGCCTTGT TTTAAGTGCA 37373 .......... .......... .......... .......... .......... .......... 249 TTGTCTAGGT CTTCTATATA TAAGTCATCA ACATCTTCTT CAACTAGACC TCTAGTCTCG 37313 .......... .......... .......... .......... .......... .......... 249 CGTACTGCAA CAAGTGTCAA TAGAGAAGTA CTCAATACAG ATCCTTGGCC AGTAAAACCA 37253 .......... .......... .......... .......... .......... .......... 249 ACATATATAG AATGTCAAAG GGTAAAATCT TGAGAATAAT GAAAAGACAC ATGTACTAGA 37193 .......... .......... .......... .......... .......... .......... 249 ATGGCAAGAA CATTCACAAA AGATTGACAC TCTCACGACT TTGATAAACA AAATGGATCT 37133 .......... .......... .......... .......... .......... .......... 249 AGCAAGTAAT AACAACACCA TCATTTTTAA TCCCTCTTAA ACAAAGCGAG CTACTAATAT 37073 .......... .......... .......... .......... .......... .......... 249 ATAATAGATA TGGATGTTAC ATTCATGAAG CTGGCATTGG AAAGGGGATT TAATAATAGC 37013 .......... .......... .......... .......... .......... .......... 249 ATACACAGTT TCTGTGAACT GCAACACTAA CAACCTGACA GAAACAAGAC TGCTAGACAT 36953 .......... .......... .......... .......... .......... .......... 249 TGCTTTAGAG AGGCTAACCA AGTTGTGGAT ACCCTAAGTA TGCCTCTTCA CACAATGTGT 36893 .......... .......... .......... .......... .......... .......... 249 GTGTGTCTAC ATTTCAAGAG CTTTCCAAAG ATTCACAAGG CCCTTACCGA CCATACAAAG 36833 .......... .......... .......... .......... .......... .......... 249 TGCAACTTCC TAGTATTAGA ATCAAAGCTA ACTTTTTTTG TGAGTTAATT TCGTGTGTCT 36773 .......... .......... .......... .......... .......... .......... 249 TGTAGTTTGT AGAATAGATT AGGCTGGAAT GCCTAATCCT ACTCTCTATC ATTTTGACTG 36713 .......... .......... .......... .......... .......... .......... 249 GTTTGGGTTA TTAGTTGAAT GTCATATTTG AAGGGCACAT TGAAATTTCG TGGGACGCTA 36653 .......... .......... .......... .......... .......... .......... 249 TTATAGAATA GATTTGGAAG TGTATATGGA ATTTTGATTT TGTTATAGTT AGTATGTATT 36593 .......... .......... .......... .......... .......... .......... 249 TTTGTATTTC ATAAATTTAT TATGTTTTGC ATTCTGATTT TTTTTTTTGT GTTAGTTATG 36533 .......... .......... .......... .......... .......... .......... 249 TCAATGTAAC ACATTATACG TTTGATTGTG TTATTTACTA TAATAGAATA GATTTTTAAG 36473 .......... .......... .......... .......... .......... .......... 249 TGTATATGAA ATTTTGATTC TGTTATAGTT GGTATGTATT TTTATATTTC ATAGATTTAA 36413 .......... .......... .......... .......... .......... .......... 249 TGTATTTTGT ATTCATAGAT TTGAAAGTGT ATATGAAATT TTGATTCTAT TATAGTTAAT 36353 .......... .......... .......... .......... .......... .......... 249 ATGTATTTCA TAGATTTAAT GTATTTATAT TCTGTTTTTT TTTGTTGAGT TAGTTATGTC 36293 .......... .......... .......... .......... .......... .......... 249 GATGTTGAGA GTTTTAAACA TTTGCTACTT TTTAAAAATT TTATCTCCCC TAAATAGCTT 36233 .......... .......... .......... .......... .......... .......... 249 CTGTTTGTTA CATAAATTCT ATATTCTTTT TAATTAAACC AAATAATTAT AATATAATTA 36173 .......... .......... .......... .......... .......... .......... 249 ACATACATAA TAAAGTAAAA TTTTGATATT ATCACTAAAT ATTGAAACTA CTGATACAAT 36113 .......... .......... .......... .......... .......... .......... 249 AACCTATTAA ATACTAAAAT ATTGACATTT TAAAAAAATT TCCGTTATTA ATTCCAACAA 36053 .......... .......... .......... .......... .......... .......... 249 AAAGAATAAG TGGAAAAAAA ACATAAATAG CTAACTTTCT GAAAAATAAT TGCAAAACTA 35993 .......... .......... .......... .......... .......... .......... 249 TAGCAGCATT GATCCACTAT CATTTTATTG CATATAAATG TCACGATCCA AAT-CGGGTC 35934 |||| ||| ||| |||| | .......... .......... .......... .......... ..ACGACCCA AATCCGGGCC 267 GCGACTGACA CCCACACTTA CCCTCCTATG TGAGCGAACC AACCAATCTA AACCTTAACA 35874 || |||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCACTGGCA CCCACACTTA CCCTCCTATG TGAGCGAACC AACCAATCTA AACCTTAACA 327 TTTCAATATA ATATCAACAG AAAGTAATGC GGAAGACTTA AACTCATTAA TAAAAACCAA 35814 ||||||| || ||| |||||| |||||||||| |||||||||| |||||||||| | || || TTTCAATGTA ATAGCAACAG AAAGTAATGC GGAAGACTTA AACTCATTAA T---AA--AA 382 TTCAATAACT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGA AGTCATCATC 35754 ||||||||| || | | | |||| |||| || | | ||| |||| ||||| |||||||||| -TCAATAACT ACT-ATTATT AAACATCTAT TA-T-T-CCC AAAACCTGGA AGTCATCATC 437 ACAAGAACAT CTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCT- -AAAA-TACA 35697 |||||||||| |||||| ||| |||||| || ||||||| || ||||||||| |||| |||| ACAAGAACAT CTACTTTAAA CTACTAATTC TAAGAGTTTC TAAGAAGCTA AAAAATTACA 497 TAAACAGCTA GTCCATGCCG GAACATCAAG GCATCAAGAC ATGAAGAAGA AGATCCAGTC 35637 ||| ||||| |||||||||| ||| ||||| |||||||||| |||||| ||| |||||||||| TAAGAAGCTA GTCCATGCCG GAAGTTCAAG GCATCAAGAC ATGAAGGAGA AGATCCAGTC 557 CAAGCTAGAA GCTTTAGCTC ACCCTGAA-A TCTGGTGTGA TGAAGACTGG CTAGAGTTGC 35578 |||||||||| || ||||||| |||||||| | || ||||||| ||||||||| || ||||| | CAAGCTAGAA GCGTTAGCTC ACCCTGAAGA TCCGGTGTGA CGAAGACTGG CTTGAGTTAC 617 GGTTGGATTG AAGACGACGA TACGTTTGCT GCACTCCACA ATGAACAAAA AG-AAAACAT 35519 |||| | | |||| |||| ||||||||| |||||||||| | | ||| | || ||||||| TGTTGAGTCG AAGATGACGG CACGTTTGCT GCACTCCACA AATACCAAGA AGAAAAACAT 677 ACAAGTAGGG GTCAGTAGAA AACACGAGTA CTGAGTAGAT ATCATCGGCC AA 35467 | |||||||| ||||||| || |||||| || |||||||||| |||||||||| || AAAAGTAGGG GTCAGTACAA AACACGGCTA CTGAGTAGAT ATCATCGGCC AA 729 hqPGS_C04HBa0077O05.1-_SGN-E351546- (35950 35467) ******************************************************************************** EST sequence 129 -strand 655 n (File: SGN-E356696-) 1 CAATTGGACT CAAGTAGTAG CACGAAAGAA AGAATGAAAG AGTGAAGTTT TCCTAAAGTC 61 TTATAGCCTC TCAAGGAAAA GTAAAAGCGT CCCCCTACCG TTCCTTAAGA CTCTACTAGA 121 CTTGTTCTTG TGTGATGAGA CCAACGAACC TAATGCTCTG ATACCAAGTT TTGTCACGAC 181 CCAAATCCGG GCCGCCACTG GCACCCACAC TTACCCTCNT ATGTGAGCGA ACCAACCAAT 241 CTAAACCTTA ACATTTCAAT GTAATAGCAA CAGAAAGTAA TGCGGAAGAC TTAAACTCAT 301 TAATAAAATC AATAACTACT ATTATTAAAC ATCTATTATT CCCAAAACCT GGAAGTCATC 361 ATCACAAGAA CATCTACTTT AAACTACTAA TTCTAAGAGT TTCTAAGAAG CTAAAAAATT 421 ACATAAGAAG CTAGTCCATG CCGGAAGTTC AAGGCATCAA GACATGAAGG AGAAGATCCA 481 GTCCAAGCTA GAAGCGTTAG CTCACCCTGA AGATCCGGTG TGACGAAGAC TGGCTTGAGT 541 TACTGTTGAG TCGAAGATGA CGGCACGTTT GCTGCACTCC ACAAATAACA AGAAGAAAAA 601 CATAAAAGTA GGGGTCAGTA CAAAACACGG CTACTGAGTA GATATCATCG GCCAA Predicted gene structure (within gDNA segment 39145 to 33425): Exon 1 37972 37958 ( 15 n); cDNA 162 175 ( 14 n); score: 0.667 Intron 1 37957 35951 (2007 n); Pd: 0.453 (s: 0), Pa: 0.000 (s: 0.85) Exon 2 35950 35467 ( 484 n); cDNA 176 655 ( 480 n); score: 0.862 MATCH C04HBa0077O05.1- SGN-E356696- 0.862 499 0.762 C PGS_C04HBa0077O05.1-_SGN-E356696- (37972 37958,35950 35467) Alignment (genomic DNA sequence = upper lines): TACCTACTCT TGGTGGCATG TTTATTACGT TTTACGTTGG AACTAAGGTG ACTCTCTAGA 37913 |||| | | | | || TACCAAGTTT T-GTC..... .......... .......... .......... .......... 175 TATTTCCAAT GATTTACTTT TGAATTTCTC AATGCATGTT CATTATGATT TGAATTTAAG 37853 .......... .......... .......... .......... .......... .......... 175 AGAACAGTGT AGTTTTGAAT CCTGGCTGCG TATTAATCAT GATCTGAATC TGATAATGCA 37793 .......... .......... .......... .......... .......... .......... 175 GCTCATGTTT TATATCTCTG ATGCCAAGAA AAAACACATC CACAGCAGAT GACACACAGG 37733 .......... .......... .......... .......... .......... .......... 175 TTCATTCCTG GGCAAACAGA ACAGAAACAA CATGATACAA AATCCATTAG CATCTCATGA 37673 .......... .......... .......... .......... .......... .......... 175 GGAAGACCCC CATCAGTAGA TAGTAGTTGG TCTCTTTTGA GGAATTCATT TTCACCTTGA 37613 .......... .......... .......... .......... .......... .......... 175 ATTAATCCCT CAACCAACTA CACCTCTATA ACTAGTTAAG AGTTTTTTTT GTTCCTGTTC 37553 .......... .......... .......... .......... .......... .......... 175 TTTTTATCCC ACACTACTTG CAGTTGACTA AGAGCCCATT TGGAAGGTTA CTTTGTAGTA 37493 .......... .......... .......... .......... .......... .......... 175 TGGTATAATA ATAGAAGTGC ACCAAGTTTA CTTGCTTTGG GCAAAAGGTC AGAAACTGGC 37433 .......... .......... .......... .......... .......... .......... 175 ACATGAAACT TGATAACTTC AAACATTCGC GTCTGCAAGT GTGGCCTTGT TTTAAGTGCA 37373 .......... .......... .......... .......... .......... .......... 175 TTGTCTAGGT CTTCTATATA TAAGTCATCA ACATCTTCTT CAACTAGACC TCTAGTCTCG 37313 .......... .......... .......... .......... .......... .......... 175 CGTACTGCAA CAAGTGTCAA TAGAGAAGTA CTCAATACAG ATCCTTGGCC AGTAAAACCA 37253 .......... .......... .......... .......... .......... .......... 175 ACATATATAG AATGTCAAAG GGTAAAATCT TGAGAATAAT GAAAAGACAC ATGTACTAGA 37193 .......... .......... .......... .......... .......... .......... 175 ATGGCAAGAA CATTCACAAA AGATTGACAC TCTCACGACT TTGATAAACA AAATGGATCT 37133 .......... .......... .......... .......... .......... .......... 175 AGCAAGTAAT AACAACACCA TCATTTTTAA TCCCTCTTAA ACAAAGCGAG CTACTAATAT 37073 .......... .......... .......... .......... .......... .......... 175 ATAATAGATA TGGATGTTAC ATTCATGAAG CTGGCATTGG AAAGGGGATT TAATAATAGC 37013 .......... .......... .......... .......... .......... .......... 175 ATACACAGTT TCTGTGAACT GCAACACTAA CAACCTGACA GAAACAAGAC TGCTAGACAT 36953 .......... .......... .......... .......... .......... .......... 175 TGCTTTAGAG AGGCTAACCA AGTTGTGGAT ACCCTAAGTA TGCCTCTTCA CACAATGTGT 36893 .......... .......... .......... .......... .......... .......... 175 GTGTGTCTAC ATTTCAAGAG CTTTCCAAAG ATTCACAAGG CCCTTACCGA CCATACAAAG 36833 .......... .......... .......... .......... .......... .......... 175 TGCAACTTCC TAGTATTAGA ATCAAAGCTA ACTTTTTTTG TGAGTTAATT TCGTGTGTCT 36773 .......... .......... .......... .......... .......... .......... 175 TGTAGTTTGT AGAATAGATT AGGCTGGAAT GCCTAATCCT ACTCTCTATC ATTTTGACTG 36713 .......... .......... .......... .......... .......... .......... 175 GTTTGGGTTA TTAGTTGAAT GTCATATTTG AAGGGCACAT TGAAATTTCG TGGGACGCTA 36653 .......... .......... .......... .......... .......... .......... 175 TTATAGAATA GATTTGGAAG TGTATATGGA ATTTTGATTT TGTTATAGTT AGTATGTATT 36593 .......... .......... .......... .......... .......... .......... 175 TTTGTATTTC ATAAATTTAT TATGTTTTGC ATTCTGATTT TTTTTTTTGT GTTAGTTATG 36533 .......... .......... .......... .......... .......... .......... 175 TCAATGTAAC ACATTATACG TTTGATTGTG TTATTTACTA TAATAGAATA GATTTTTAAG 36473 .......... .......... .......... .......... .......... .......... 175 TGTATATGAA ATTTTGATTC TGTTATAGTT GGTATGTATT TTTATATTTC ATAGATTTAA 36413 .......... .......... .......... .......... .......... .......... 175 TGTATTTTGT ATTCATAGAT TTGAAAGTGT ATATGAAATT TTGATTCTAT TATAGTTAAT 36353 .......... .......... .......... .......... .......... .......... 175 ATGTATTTCA TAGATTTAAT GTATTTATAT TCTGTTTTTT TTTGTTGAGT TAGTTATGTC 36293 .......... .......... .......... .......... .......... .......... 175 GATGTTGAGA GTTTTAAACA TTTGCTACTT TTTAAAAATT TTATCTCCCC TAAATAGCTT 36233 .......... .......... .......... .......... .......... .......... 175 CTGTTTGTTA CATAAATTCT ATATTCTTTT TAATTAAACC AAATAATTAT AATATAATTA 36173 .......... .......... .......... .......... .......... .......... 175 ACATACATAA TAAAGTAAAA TTTTGATATT ATCACTAAAT ATTGAAACTA CTGATACAAT 36113 .......... .......... .......... .......... .......... .......... 175 AACCTATTAA ATACTAAAAT ATTGACATTT TAAAAAAATT TCCGTTATTA ATTCCAACAA 36053 .......... .......... .......... .......... .......... .......... 175 AAAGAATAAG TGGAAAAAAA ACATAAATAG CTAACTTTCT GAAAAATAAT TGCAAAACTA 35993 .......... .......... .......... .......... .......... .......... 175 TAGCAGCATT GATCCACTAT CATTTTATTG CATATAAATG TCACGATCCA AAT-CGGGTC 35934 |||| ||| ||| |||| | .......... .......... .......... .......... ..ACGACCCA AATCCGGGCC 193 GCGACTGACA CCCACACTTA CCCTCCTATG TGAGCGAACC AACCAATCTA AACCTTAACA 35874 || |||| || |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| GCCACTGGCA CCCACACTTA CCCTCNTATG TGAGCGAACC AACCAATCTA AACCTTAACA 253 TTTCAATATA ATATCAACAG AAAGTAATGC GGAAGACTTA AACTCATTAA TAAAAACCAA 35814 ||||||| || ||| |||||| |||||||||| |||||||||| |||||||||| | || || TTTCAATGTA ATAGCAACAG AAAGTAATGC GGAAGACTTA AACTCATTAA T---AA--AA 308 TTCAATAACT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGA AGTCATCATC 35754 ||||||||| || | | | |||| |||| || | | ||| |||| ||||| |||||||||| -TCAATAACT ACT-ATTATT AAACATCTAT TA-T-T-CCC AAAACCTGGA AGTCATCATC 363 ACAAGAACAT CTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCT- -AAAA-TACA 35697 |||||||||| |||||| ||| |||||| || ||||||| || ||||||||| |||| |||| ACAAGAACAT CTACTTTAAA CTACTAATTC TAAGAGTTTC TAAGAAGCTA AAAAATTACA 423 TAAACAGCTA GTCCATGCCG GAACATCAAG GCATCAAGAC ATGAAGAAGA AGATCCAGTC 35637 ||| ||||| |||||||||| ||| ||||| |||||||||| |||||| ||| |||||||||| TAAGAAGCTA GTCCATGCCG GAAGTTCAAG GCATCAAGAC ATGAAGGAGA AGATCCAGTC 483 CAAGCTAGAA GCTTTAGCTC ACCCTGAA-A TCTGGTGTGA TGAAGACTGG CTAGAGTTGC 35578 |||||||||| || ||||||| |||||||| | || ||||||| ||||||||| || ||||| | CAAGCTAGAA GCGTTAGCTC ACCCTGAAGA TCCGGTGTGA CGAAGACTGG CTTGAGTTAC 543 GGTTGGATTG AAGACGACGA TACGTTTGCT GCACTCCACA ATGAACAAAA AG-AAAACAT 35519 |||| | | |||| |||| ||||||||| |||||||||| | ||||| | || ||||||| TGTTGAGTCG AAGATGACGG CACGTTTGCT GCACTCCACA AATAACAAGA AGAAAAACAT 603 ACAAGTAGGG GTCAGTAGAA AACACGAGTA CTGAGTAGAT ATCATCGGCC AA 35467 | |||||||| ||||||| || |||||| || |||||||||| |||||||||| || AAAAGTAGGG GTCAGTACAA AACACGGCTA CTGAGTAGAT ATCATCGGCC AA 655 hqPGS_C04HBa0077O05.1-_SGN-E356696- (35950 35467) ******************************************************************************** EST sequence 161 +strand 434 n (File: SGN-E222578+) 1 TTTTTTTTTT TTTTTTTTTA ATAAAAACCA ATTCAATAAC TATCAATATT CAACATCTAT 61 TATTCCCAAA ACCTGGAAGT CATCATCACA AGAACATCTA CTTTAAACTA CTAATTCTAA 121 GAGTTTCTAA AAGCTAAAAA TACATAAGAA GCTAGTCCAT GCCGGAGGTT CAAGGCATCA 181 AGACATGAAG GAGAAGATCC AGTCCAAGCT AGACGCGTTA GCTCACCCTG AAGATCCGGT 241 GTGACGAAGA CTGGCTTGAG TTACTGTTGA GTCGAAGATG ACGGCACGTT TGCTGCACTC 301 CACAACTTTC TAGATGGGGA CTTTCTTCAA GGCTTCGAGA TGGAAACTTG CTTGCAGAGC 361 TTCGAGTGTT ACCAGCTTCA AGATGGAGTT TCAGTGATGA GGCTTGCTAG TCTCGAGTTT 421 TTTTTTTTTT TTTT Predicted gene structure (within gDNA segment 37088 to 32208): Exon 1 36561 36545 ( 17 n); cDNA 1 17 ( 17 n); score: 0.824 Intron 1 36544 35828 ( 717 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.84) Exon 2 35827 35538 ( 290 n); cDNA 18 304 ( 287 n); score: 0.866 Intron 2 35537 33085 (2453 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0) Exon 3 33084 33078 ( 7 n); cDNA 305 311 ( 7 n); score: 0.857 MATCH C04HBa0077O05.1- SGN-E222578+ 0.866 314 0.724 C PGS_C04HBa0077O05.1-_SGN-E222578+ (36561 36545,35827 35538,33084 33078) Alignment (genomic DNA sequence = upper lines): TTCTGATTTT TTTTTTTGTG TTAGTTATGT CAATGTAACA CATTATACGT TTGATTGTGT 36502 || | |||| ||||||| TTTTTTTTTT TTTTTTT... .......... .......... .......... .......... 17 TATTTACTAT AATAGAATAG ATTTTTAAGT GTATATGAAA TTTTGATTCT GTTATAGTTG 36442 .......... .......... .......... .......... .......... .......... 17 GTATGTATTT TTATATTTCA TAGATTTAAT GTATTTTGTA TTCATAGATT TGAAAGTGTA 36382 .......... .......... .......... .......... .......... .......... 17 TATGAAATTT TGATTCTATT ATAGTTAATA TGTATTTCAT AGATTTAATG TATTTATATT 36322 .......... .......... .......... .......... .......... .......... 17 CTGTTTTTTT TTGTTGAGTT AGTTATGTCG ATGTTGAGAG TTTTAAACAT TTGCTACTTT 36262 .......... .......... .......... .......... .......... .......... 17 TTAAAAATTT TATCTCCCCT AAATAGCTTC TGTTTGTTAC ATAAATTCTA TATTCTTTTT 36202 .......... .......... .......... .......... .......... .......... 17 AATTAAACCA AATAATTATA ATATAATTAA CATACATAAT AAAGTAAAAT TTTGATATTA 36142 .......... .......... .......... .......... .......... .......... 17 TCACTAAATA TTGAAACTAC TGATACAATA ACCTATTAAA TACTAAAATA TTGACATTTT 36082 .......... .......... .......... .......... .......... .......... 17 AAAAAAATTT CCGTTATTAA TTCCAACAAA AAGAATAAGT GGAAAAAAAA CATAAATAGC 36022 .......... .......... .......... .......... .......... .......... 17 TAACTTTCTG AAAAATAATT GCAAAACTAT AGCAGCATTG ATCCACTATC ATTTTATTGC 35962 .......... .......... .......... .......... .......... .......... 17 ATATAAATGT CACGATCCAA ATCGGGTCGC GACTGACACC CACACTTACC CTCCTATGTG 35902 .......... .......... .......... .......... .......... .......... 17 AGCGAACCAA CCAATCTAAA CCTTAACATT TCAATATAAT ATCAACAGAA AGTAATGCGG 35842 .......... .......... .......... .......... .......... .......... 17 AAGACTTAAA CTCATTAATA AAAACCAATT CAATAACTTC TAAAAACTCA ACAACTATTA 35782 |||||| |||||||||| ||||||| | | || | ||| ||| |||||| .......... ....TTAATA AAAACCAATT CAATAAC-TA TCAATATTCA ACATCTATTA 62 TTATCCCCAA AATCTGGAAG TCATCATCAC AAGAACATCT ACTTCAAATT ACTAAATCTA 35722 | | ||||| || ||||||| |||||||||| |||||||||| |||| ||| | ||||| |||| T--T-CCCAA AACCTGGAAG TCATCATCAC AAGAACATCT ACTTTAAACT ACTAATTCTA 119 AGAGTATCTA AGAAGCT-AA AATACATAAA CAGCTAGTCC ATGCCGGAAC ATCAAGGCAT 35663 ||||| |||| | ||||| || ||||||||| ||||||||| |||||||| ||||||||| AGAGTTTCTA A-AAGCTAAA AATACATAAG AAGCTAGTCC ATGCCGGAGG TTCAAGGCAT 178 CAAGACATGA AGAAGAAGAT CCAGTCCAAG CTAGAAGCTT TAGCTCACCC TGAA-ATCTG 35604 |||||||||| || ||||||| |||||||||| ||||| || | |||||||||| |||| ||| | CAAGACATGA AGGAGAAGAT CCAGTCCAAG CTAGACGCGT TAGCTCACCC TGAAGATCCG 238 GTGTGATGAA GACTGGCTAG AGTTGCGGTT GGATTGAAGA CGACGATACG TTTGCTGCAC 35544 |||||| ||| |||||||| | |||| | ||| | | ||||| |||| ||| |||||||||| GTGTGACGAA GACTGGCTTG AGTTACTGTT GAGTCGAAGA TGACGGCACG TTTGCTGCAC 298 TCCACAATGA ACAAAAAGAA AACATACAAG TAGGGGTCAG TAGAAAACAC GAGTACTGAG 35484 |||||| TCCACA.... .......... .......... .......... .......... .......... 304 TAGATATCAT CGGCCAACTC AAAATAGAAA ACAGTATATA TCAGATAATA TCATAAAATC 35424 .......... .......... .......... .......... .......... .......... 304 AACTACAGTA CTTAACATGC AACATTTACA ATTACCATAA CCCTTGGTCA TAACACCAAT 35364 .......... .......... .......... .......... .......... .......... 304 CTCATCAATG AGGACTCACG CCTCCCCATC ATACTCATTT GAGAATTAGG TTCATTAAAT 35304 .......... .......... .......... .......... .......... .......... 304 TAAGTATATT AACATATTTC AAGATTCATT CTCTTTACTA ATCCTGGTGC CGGAACGTGA 35244 .......... .......... .......... .......... .......... .......... 304 CACTCCGATC CTCATATACT ATCCTGGTAC CGGACGTGGC ACCCGATCCA TATACTATCC 35184 .......... .......... .......... .......... .......... .......... 304 TGGTGTCGGA ACGTGACACT CCGATCCTCA TATACTATCC TGGTACCGGA ACGTGGCACC 35124 .......... .......... .......... .......... .......... .......... 304 CGATCCATAT ACTATCCTGG TGTCGGAACG TGACACCCGA TCCATATACT ATCCTGGTGT 35064 .......... .......... .......... .......... .......... .......... 304 CGGAACGTGA CACTCCGATC CTCACATACT ATCCTGGTAC CGGAACGTGG CACCCGATCC 35004 .......... .......... .......... .......... .......... .......... 304 ATATACTATC CTGGTGTCGA AACGTGACAC TCCGATCCTC ATATACTATC CTGGTACCGG 34944 .......... .......... .......... .......... .......... .......... 304 AACGTGGCAC CCGATCCCCT AATCTCACTA CTTTCGTTCA TCAAGCCTTC TTTTATACCA 34884 .......... .......... .......... .......... .......... .......... 304 AGACATCATC ATTAACAAAG TAGATTAGGG CTTTTCAAGA TTTAGGATTC AATAGCTTCA 34824 .......... .......... .......... .......... .......... .......... 304 TCATGCTTAT TCATCACAAT TATATAATCG CATCATGTAA GCATACAATT AATCACATAG 34764 .......... .......... .......... .......... .......... .......... 304 AAGGGTTTAC AACACTACCC AATACATATC ATTCGCTATT AAGAGTTTAC TACGAATAGT 34704 .......... .......... .......... .......... .......... .......... 304 ATAAAAACCA TAACCTACCT CCACCGAAGA TTAGTGATCA AGCAAGCAAA TTCCCCAAAG 34644 .......... .......... .......... .......... .......... .......... 304 CTTTGTGTTT TCCTCTTCTC GTTCGATCCT CTCTCTCTCT TTGTTCTTTC TATTTTCTTT 34584 .......... .......... .......... .......... .......... .......... 304 ATTCAAACCC TCTTTCTTTT ACCCTAATTA GCATATAATT AAGAATAAAA GATGGCAATA 34524 .......... .......... .......... .......... .......... .......... 304 ATAACCCACT AATTTACTCA AGGTTACCTC TTTTAACCCC CAAGTAATTA GACTTATTAA 34464 .......... .......... .......... .......... .......... .......... 304 CATTAACCCA CTAACTTTAT AATTAAAACA GGAATAGTCA AAAACTTCCT TTAAAACATT 34404 .......... .......... .......... .......... .......... .......... 304 AAAGAAATCC GACTCAGCCT GGGATTACGC AGCCTGTGAC GGCCTGTCAT GCCTGCGACG 34344 .......... .......... .......... .......... .......... .......... 304 GTCCGTCCTG CTGCTCCGTC ACAGAGTTCA GAGACTCAAT TCCTTTAAAG AGTTTGTGAC 34284 .......... .......... .......... .......... .......... .......... 304 GGTCCGTCAC GCCTGTGACG GTCCGTCCTG CCTGTGACGG TCCATCCTGC CATTCCGTTA 34224 .......... .......... .......... .......... .......... .......... 304 CGAAGTTCAG AGAGTCGATT TCAGTACCCA TTTTTCAGAA TTTTAAAGTG TTTTGAAACG 34164 .......... .......... .......... .......... .......... .......... 304 AGACCCCCTC GACGGTCCGT CGTGCCCATG ACGGTCCGTC GTGGGATCCG TCGTCTCAGC 34104 .......... .......... .......... .......... .......... .......... 304 CAGTTTTCCA GAAATAACAT CTCTTGCTCA AAACGACTAA ACAGGTCGTT ACAATAGATA 34044 .......... .......... .......... .......... .......... .......... 304 CCAATTTACC CATCGTTCGT CCTCGAACGA TCATAAGAAG AAAAACAAGG GTGAAAAGAA 33984 .......... .......... .......... .......... .......... .......... 304 GTACCTGAAT CTGTAAACAG GTGTGGGTAT CTTTCTTGCA TATCAGCCTC TTTCTTCCAA 33924 .......... .......... .......... .......... .......... .......... 304 GTGGCTTCTT CAACGGGTCG ATTCTTCCAT TGAACTTTGA TGGATGCAAT CTCCCTTGAC 33864 .......... .......... .......... .......... .......... .......... 304 CTCAGCTTGC GAACTTCTCT ATCTAAAATG GCAACAGGCT CCTCCTCATA AGACAAATTT 33804 .......... .......... .......... .......... .......... .......... 304 TCATCAAGCA GAACTGAATC CCAACGAATG ATGTAGTTTC CATCCCTATG GTATCTTTTC 33744 .......... .......... .......... .......... .......... .......... 304 AACATAGACA CGTGAAATAC CGGATGCACT CCGGACAGCC CTGGAGGCAA GGCTAACTCA 33684 .......... .......... .......... .......... .......... .......... 304 TAAGCCACCT CCCCTACTCG CTTAAGTACT TCAAAGGGAC CAATATACCT TGGGCTTAAT 33624 .......... .......... .......... .......... .......... .......... 304 TTACCTCTTT TACCAAAACG CATCACCCCT TTCATAGGTG AAACCTTCAG CAAGACTTGT 33564 .......... .......... .......... .......... .......... .......... 304 TCACCCTCCA TGAACTCCAA GTCTCTAACC TTTCGATCTG CATATTCCTT TTGCCTACTT 33504 .......... .......... .......... .......... .......... .......... 304 TGCGCCGCTA ACAGCTTTTC TTGAATAGAT TTCACTTTAT CTAACGATTC TCTCAGAAGG 33444 .......... .......... .......... .......... .......... .......... 304 TCAGTACCCC AAAGTCTAAC CTCAAATGCA TCAAACCACC CAATGGGAGA CCTACATCTT 33384 .......... .......... .......... .......... .......... .......... 304 CTCCCATATA GTGCCTCAAA TGGGGCCATA TCAATGCTTG AGTGATAGCT ATTGTTGTAG 33324 .......... .......... .......... .......... .......... .......... 304 GAGAACTCTG CTAAGGGTAA GAAGCTATCC CAATAACTAC CAAATTCTAT CACACATGCA 33264 .......... .......... .......... .......... .......... .......... 304 CGAAGCATAT CCTCCAACAC TTGAATCGTT CGCTCAGGCT GACCATCGGT CTGAGGATGG 33204 .......... .......... .......... .......... .......... .......... 304 AACGCAGTAC TAAGGTCCAA CCTAGTACCC AATTCCGCAT GCAATATTTT CCAAAACTTA 33144 .......... .......... .......... .......... .......... .......... 304 GAAGTAAACA TCGTTCCTCT ATCTGATATG ATGGAGAGTG GAACCCCATG CAATCGAACA 33084 | .......... .......... .......... .......... .......... .........A 305 ATTTCT 33078 ||||| CTTTCT 311 hqPGS_C04HBa0077O05.1-_SGN-E222578+ (35827 35538) ******************************************************************************** EST sequence 289 +strand 710 n (File: SGN-E392027+) 1 CCACAGCCCC AGTGGCTGGC TCAGTCGCAC CCTGTCCCGC CGGTGCTGGT GTTGATGCTG 61 GCGTAGTCGT TGCTCTAGTT CTAACCATCT GCGAAATAGA GTGAAGATGG TCAGATACCA 121 ATTTGTATCA CCTAGATACC AATTGGACCC AAGTAATAGC ACGAAAGAAG AAAGAATGGA 181 ATTTTCCAAA AGTCTTATAG CCTCTCAAGG AAAAGTAAAG GCATCCCCCT ACCGTTCCTT 241 AAGACTCTAC TAGACTCGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 301 AGTTTGTCAC GACCAAAACC GGGTTGCGAC TGGCACCCAC ACTTACCCTC CTATGTGAGC 361 GAACCAACCA ATCTAACCTT AACATTTCAA TATAATATCA ACAGAAAGTA ATGTGGAAGA 421 CTTAAACTCA TTAAATACAG ACCAATTCAT TAACTTCTAA AATTCAACAT CTATTATTCC 481 CCAAAATCTG GAAGTCATCA CCACAAGAAC ATCTACGATC AAATGACTAA ACTAAGAGTA 541 GTCTAAAAGC TAAAAATACA TAAGAAGCTA GTCCATGCCG GAAGTTCAAG GCATCAAGAC 601 TTGAAGAAGA AGATCCAGTC CAAGCTAGAA GCATTAGCTC ACCCTGAATT TCCGATGTAG 661 TAAGACTGGC TTGAATTACT GTTGAGTTGA ACACGATGGC ACGTTTGCTG Predicted gene structure (within gDNA segment 39855 to 34235): Exon 1 35954 35547 ( 408 n); cDNA 305 710 ( 406 n); score: 0.866 MATCH C04HBa0077O05.1- SGN-E392027+ 0.866 408 0.575 C PGS_C04HBa0077O05.1-_SGN-E392027+ (35954 35547) Alignment (genomic DNA sequence = upper lines): TGTCACGATC CAAATCGGGT CGCGACTGAC ACCCACACTT ACCCTCCTAT GTGAGCGAAC 35895 |||||||| | ||| ||||| ||||||| | |||||||||| |||||||||| |||||||||| TGTCACGACC AAAACCGGGT TGCGACTGGC ACCCACACTT ACCCTCCTAT GTGAGCGAAC 364 CAACCAATCT AAACCTTAAC ATTTCAATAT AATATCAACA GAAAGTAATG CGGAAGACTT 35835 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CAACCAATCT -AACCTTAAC ATTTCAATAT AATATCAACA GAAAGTAATG TGGAAGACTT 423 AAACTCATT- AATAAAAACC AATTCAATAA CTTCTAAAAA CTCAACAACT ATTATTATCC 35776 ||||||||| |||| | ||| |||||| ||| ||||| |||| |||||| || |||| | ||| AAACTCATTA AATACAGACC AATTCATTAA CTTCT-AAAA TTCAACATCT ATTA-T-TCC 480 CCAAAATCTG GAAGTCATCA TCACAAGAAC ATCTAC-TTC AAATTACTAA ATCTAAGAGT 35717 |||||||||| |||||||||| ||||||||| |||||| || |||| ||||| | |||||||| CCAAAATCTG GAAGTCATCA CCACAAGAAC ATCTACGATC AAATGACTAA A-CTAAGAGT 539 A-TCTAAGAA GCT-AAAATA CATAAACAGC TAGTCCATGC CGGAACATCA AGGCATCAAG 35659 | ||||| || ||| |||||| ||||| ||| |||||||||| ||||| ||| |||||||||| AGTCTAA-AA GCTAAAAATA CATAAGAAGC TAGTCCATGC CGGAAGTTCA AGGCATCAAG 598 ACATGAAGAA GAAGATCCAG TCCAAGCTAG AAGCTTTAGC TCACCCTGAA -ATCTGGTGT 35600 || ||||||| |||||||||| |||||||||| |||| ||||| |||||||||| || | ||| ACTTGAAGAA GAAGATCCAG TCCAAGCTAG AAGCATTAGC TCACCCTGAA TTTCCGATGT 658 GATGAAGACT GGCTAGAGTT GCGGTTGGAT TGAAGACGAC GATACGTTTG CTG 35547 | |||||| |||| || || | |||| | |||| |||| | ||||||| ||| -AGTAAGACT GGCTTGAATT ACTGTTGAGT TGAACACGAT GGCACGTTTG CTG 710 hqPGS_C04HBa0077O05.1-_SGN-E392027+ (35954 35547) ******************************************************************************** EST sequence 235 +strand 840 n (File: SGN-E542084+) 1 TTTTTTTTTT TAGGGGAAAA TTTCTTACTT CTATAAATGT CACGACCCAA ATCGGATCGC 61 GACTGGCACC CACACTTACC CTGCTATGTG AGCGAACCAA CCAATCCAAA CCTTAACATT 121 TCAATGTAAT ATCAACATAA AGTAATGCGG AAGACTTAAA CTTATTAATG AAAACCAATT 181 CAATAACTAT TATTTCCCAA AATCTGGAAG TCATCATCAT AAGAACATCT ACTTCAAATT 241 ACTAAATCTA AGAGTTTCTA AGAAGCTAAA AAATACATAA AAGCTAGTCC ATGCCGGAAC 301 TTCAAGACAT CAAGACATGA AGAGGAAGAT CCAGTCCAAT CTAGAAAGCA TTAGCTCACC 361 CTGATATCCG AAGTAATGAA GACTGGCTAG AGTTACTGTT GAGTCGAAGA TGACGGCACG 421 TTTGCTAAAA TCAGTGGACG GAGGAGAAGG GAAAGCACAC CGGGAATGAG AAGAAGCTGA 481 AGGAGGAACC AAAGAGGAAT CCCATTGCAA AGTAAATGAG AGTGTAAGCT AGCAGACGCG 541 ATGGAAGAGC TTACGCAGAA ATAACACTCT CATTTGGTGA TTTAGTTTGG AGATCATCTG 601 AGACCTTCGT GTTGGACAAC ATCATCCATG AAGATGTCAT TAGAAAAGTT AGATGCTTTA 661 TATACATGTT GATAGTTCCT GACTACTCTA TTTCTTTTTC AGAAAGCCCC GAAATTTCTC 721 AGATGATAAA TGCTGTCTGT TTTGGAAAAC CATCTCTATG CAAAGATGAT GTTTGCTGCA 781 TTGAGGTGTC AATATTGGGA ATTTCAAGAA AATTATGCCT TGTAGAATAT GTACAGCAAC Predicted gene structure (within gDNA segment 37185 to 29870): Exon 1 35960 35548 ( 413 n); cDNA 32 426 ( 395 n); score: 0.861 PPA cDNA 11 1 MATCH C04HBa0077O05.1- SGN-E542084+ 0.861 413 0.492 C PGS_C04HBa0077O05.1-_SGN-E542084+ (35960 35548) Alignment (genomic DNA sequence = upper lines): TATAAATGTC ACGATCCAAA TCGGGTCGCG ACTGACACCC ACACTTACCC TCCTATGTGA 35901 |||||||||| |||| ||||| |||| ||||| |||| ||||| |||||||||| | |||||||| TATAAATGTC ACGACCCAAA TCGGATCGCG ACTGGCACCC ACACTTACCC TGCTATGTGA 91 GCGAACCAAC CAATCTAAAC CTTAACATTT CAATATAATA TCAACAGAAA GTAATGCGGA 35841 |||||||||| ||||| |||| |||||||||| |||| ||||| |||||| ||| |||||||||| GCGAACCAAC CAATCCAAAC CTTAACATTT CAATGTAATA TCAACATAAA GTAATGCGGA 151 AGACTTAAAC TCATTAATAA AAACCAATTC AATAACTTCT AAAAACTCAA CAACTATTAT 35781 |||||||||| | |||||| | |||||||||| ||||| || | | || | | AGACTTAAAC TTATTAATGA AAACCAATTC AATAA---CT ----A-T--- ----TA-T-T 194 TATCCCCAAA ATCTGGAAGT CATCATCACA AGAACATCTA CTTCAAATTA CTAAATCTAA 35721 | |||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| T---CCCAAA ATCTGGAAGT CATCATCATA AGAACATCTA CTTCAAATTA CTAAATCTAA 251 GAGTATCTAA GAAGCT--AA AATACATAAA CAGCTAGTCC ATGCCGGAAC ATCAAGGCAT 35663 |||| ||||| |||||| || |||||||||| ||||||||| |||||||||| ||||| ||| GAGTTTCTAA GAAGCTAAAA AATACATAAA -AGCTAGTCC ATGCCGGAAC TTCAAGACAT 310 CAAGACATGA AGAAGAAGAT CCAGTCCAAG CTAG-AAGCT TTAGCTCACC CTGAAATCTG 35604 |||||||||| ||| |||||| ||||||||| |||| |||| |||||||||| |||| ||| | CAAGACATGA AGAGGAAGAT CCAGTCCAAT CTAGAAAGCA TTAGCTCACC CTGATATCCG 370 GTGTGATGAA GACTGGCTAG AGTTGCGGTT GGATTGAAGA CGACGATACG TTTGCT 35548 || ||||| |||||||||| |||| | ||| | | ||||| |||| ||| |||||| AAGTAATGAA GACTGGCTAG AGTTACTGTT GAGTCGAAGA TGACGGCACG TTTGCT 426 hqPGS_C04HBa0077O05.1-_SGN-E542084+ (35960 35548) ******************************************************************************** EST sequence 159 +strand 679 n (File: SGN-E370357+) 1 TTTTTTTTTT CTTACAATTA TATTATGAAT TCGATAATCT TTAATGTCAC GACCCAAATC 61 GAGCCGCAAG TGGCACCCAC ACTTACCCTC CTATGTGAGC GAACCAACCA ATACAAAATC 121 CAACATTTCA ATATAATGAC GGAATATAAT GCGGAAGACT TAAACTCATT AATGAAAATC 181 AATTAAATAA CTTCTAAAAA CTCAACAACT ATTATTATCC CCAAAATCTG GAAGTCATCA 241 TCACAAGAAC ATCTATCCTC AAATTACTAA TTCTAAGAGT ATCTAGAAAG CTAGAATAAC 301 TAAAAAGCTA GTCCATGCCG GAACTTCAAG GCATCAAGAC ATGAAGAAGA AGATCCAGTC 361 CAAGCTAGAA GCGTTAGCTC ACACTGAAAT CCGGTATAAT GAAGACTGGC TAGAGTTGCG 421 GTTGAGTTGA AGACGACGGT ACGTTTGCTT TATTCGAGTG TCAATTAATC ATTCGGCTGT 481 CACCCAAATA TTATTGATTG ATTACACCTC TGCCATTTGT AAAATTTTTC AAATTTGCCT 541 ACGGATGCAG AATTTTCCTC GAATTTCTGA TGTGTTTTCT TGTAAATAGT GGCCATTTGT 601 GTAAGTAAAT GCCCATTTCT CCTCCTACAA AGTCCAATTC CATTTTTCCC CCAATCCACC 661 ATGGCAACAC CACCTCCAA Predicted gene structure (within gDNA segment 37255 to 31945): Exon 1 35956 35548 ( 409 n); cDNA 43 449 ( 407 n); score: 0.899 PPA cDNA 13 1 MATCH C04HBa0077O05.1- SGN-E370357+ 0.899 409 0.602 C PGS_C04HBa0077O05.1-_SGN-E370357+ (35956 35548) Alignment (genomic DNA sequence = upper lines): AATGTCACGA TCCAAATCGG GTCGCGACTG ACACCCACAC TTACCCTCCT ATGTGAGCGA 35897 |||||||||| |||||||| | ||| | || ||||||||| |||||||||| |||||||||| AATGTCACGA CCCAAATCGA GCCGCAAGTG GCACCCACAC TTACCCTCCT ATGTGAGCGA 102 ACCAACCAAT CTAAACCTTA ACATTTCAAT ATAATATCAA CAGAAAGTAA TGCGGAAGAC 35837 |||||||||| ||| | |||||||||| || | || | | ||| ||| |||||||||| ACCAACCAAT ACAAAATCCA ACATTTCAAT AT-A-AT-GA CGGAATATAA TGCGGAAGAC 159 TTAAACTCAT TAATAAAAAC CAATTCAATA ACTTCTAAAA ACTCAACAAC TATTATTATC 35777 |||||||||| |||| |||| ||||| |||| |||||||||| |||||||||| |||||||||| TTAAACTCAT TAATGAAAAT CAATTAAATA ACTTCTAAAA ACTCAACAAC TATTATTATC 219 CCCAAAATCT GGAAGTCATC ATCACAAGAA CATCTA-CTT CAAATTACTA AATCTAAGAG 35718 |||||||||| |||||||||| |||||||||| |||||| | | |||||||||| | |||||||| CCCAAAATCT GGAAGTCATC ATCACAAGAA CATCTATCCT CAAATTACTA ATTCTAAGAG 279 TATCTAAGAA GCTAAAATAC ATAAACAGCT AGTCCATGCC GGAACATCAA GGCATCAAGA 35658 |||||| || |||| |||| |||| |||| |||||||||| ||||| |||| |||||||||| TATCTAGAAA GCTAGAATAA CTAAAAAGCT AGTCCATGCC GGAACTTCAA GGCATCAAGA 339 CATGAAGAAG AAGATCCAGT CCAAGCTAGA AGCTTTAGCT CACCCTGAAA TCTGGTGTGA 35598 |||||||||| |||||||||| |||||||||| ||| |||||| ||| |||||| || ||| | | CATGAAGAAG AAGATCCAGT CCAAGCTAGA AGCGTTAGCT CACACTGAAA TCCGGTATAA 399 TGAAGACTGG CTAGAGTTGC GGTTGGATTG AAGACGACGA TACGTTTGCT 35548 |||||||||| |||||||||| ||||| ||| ||||||||| |||||||||| TGAAGACTGG CTAGAGTTGC GGTTGAGTTG AAGACGACGG TACGTTTGCT 449 hqPGS_C04HBa0077O05.1-_SGN-E370357+ (35956 35548) ******************************************************************************** EST sequence 59 -strand 405 n (File: SGN-E336814-) 1 TTTTTTTTTT TAATAAAATC AATAACTATT ATTATCCCCA AAATCTGGAA GTCATCACCA 61 CAAGAACATC TATGATCAAA GTACTAAACT AAGAGTGTTC TAAAAAGCTA AAATACAAGA 121 AAGCTAGTCC ATGCCGGAAC TTCAAGACAT CAAGACATGA AGAGGAAGAT CCAGTCCAAG 181 CTAGAAACAT TAGCTCACCT TAATATCCGG AATAATGAAG ACTGGCTAGA GTTACTGTTG 241 AGTCGAAGAT GACGGCACGT TTGCTCTCTT GTGTGATTTG CAAGCTATTG CAAAGGAGTA 301 GTTGCGGGTT TCCTTGTCAT AAAAAATAAT GCAAGGGAAA GCAGAAGATA ATGAAAATTA 361 GCAATATGTC AATCCATGAT CATGAAGTGC TTTGTTTGCT TTGGG Predicted gene structure (within gDNA segment 36629 to 32837): Exon 1 35794 35548 ( 247 n); cDNA 19 265 ( 247 n); score: 0.854 PPA cDNA 11 1 MATCH C04HBa0077O05.1- SGN-E336814- 0.854 247 0.610 C PGS_C04HBa0077O05.1-_SGN-E336814- (35794 35548) Alignment (genomic DNA sequence = upper lines): TCAACAACTA TTATTATCCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTA-CTTCA 35736 |||| ||||| |||||||||| |||||||||| ||||||||| |||||||||| |||| ||| TCAATAACTA TTATTATCCC CAAAATCTGG AAGTCATCAC CACAAGAACA TCTATGATCA 78 AATTACTAAA TCTAAGAGT- ATCTAAGAAG CTAAAATACA TAAACAGCTA GTCCATGCCG 35677 || ||||||| |||||||| ||||| ||| |||||||||| | | ||||| |||||||||| AAGTACTAAA -CTAAGAGTG TTCTAAAAAG CTAAAATACA -AGAAAGCTA GTCCATGCCG 136 GAACATCAAG GCATCAAGAC ATGAAGAAGA AGATCCAGTC CAAGCTAGAA GCTTTAGCTC 35617 |||| ||||| ||||||||| ||||||| || |||||||||| |||||||||| | ||||||| GAACTTCAAG ACATCAAGAC ATGAAGAGGA AGATCCAGTC CAAGCTAGAA ACATTAGCTC 196 ACCCTGAAAT CTGGTGTGAT GAAGACTGGC TAGAGTTGCG GTTGGATTGA AGACGACGAT 35557 ||| | | || | || | || |||||||||| ||||||| | |||| | || ||| |||| ACCTTAATAT CCGGAATAAT GAAGACTGGC TAGAGTTACT GTTGAGTCGA AGATGACGGC 256 ACGTTTGCT 35548 ||||||||| ACGTTTGCT 265 hqPGS_C04HBa0077O05.1-_SGN-E336814- (35794 35548) ******************************************************************************** EST sequence 38 -strand 299 n (File: SGN-E373117-) 1 TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGA AGTCATCATC 61 ACAAGAACAT CTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 121 ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 181 GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGAA GACTGGCTAG AGTTGCGGTT 241 GAGTTGAAGA CGACGGTACG TTTGCCAAAA TTACGACAGT ATTTGGACAA GCTAGAAGA Predicted gene structure (within gDNA segment 36504 to 34393): Exon 1 35813 35551 ( 263 n); cDNA 1 263 ( 263 n); score: 0.947 MATCH C04HBa0077O05.1- SGN-E373117- 0.947 263 0.880 C PGS_C04HBa0077O05.1-_SGN-E373117- (35813 35551) Alignment (genomic DNA sequence = upper lines): TTCAATAACT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGA AGTCATCATC 35754 || | | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGA AGTCATCATC 60 ACAAGAACAT CTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 35694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGAACAT CTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 120 ACAGCTAGTC CATGCCGGAA CATCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 35634 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 180 GCTAGAAGCT TTAGCTCACC CTGAAATCTG GTGTGATGAA GACTGGCTAG AGTTGCGGTT 35574 ||||||||| |||||||||| |||||||| | ||| ||||| |||||||||| |||||||||| GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGAA GACTGGCTAG AGTTGCGGTT 240 GGATTGAAGA CGACGATACG TTT 35551 | ||||||| ||||| |||| ||| GAGTTGAAGA CGACGGTACG TTT 263 hqPGS_C04HBa0077O05.1-_SGN-E373117- (35813 35551) ******************************************************************************** EST sequence 214 +strand 299 n (File: SGN-E373116+) 1 TTTTTTTTTT CTAAAAACTC AACAACTATT ATTATCCCCA AAATCTGGAA GTCATCATCA 61 CAAGAACATC TACTTCAAAT TACTAAATCT AAGAGTATCT AAGAAGCTAA AATACATAAA 121 CAGCTAGTCC ATGCCGGAAC TTCAAGGCAT CAAGACATGA AGAAGAAGAT CCAGTCCAAG 181 CTAGAAGCGT TAGCTCACCC TGAAATCCGA TGTAATGAAG ACTGGCTAGA GTTGCGGTTG 241 AGTTGAAGAC GACGGTACGT TTGCCAAAAT TACGACAGTA TTTGGACAAG CTAGAAGAG Predicted gene structure (within gDNA segment 36484 to 34373): Exon 1 35804 35551 ( 254 n); cDNA 9 262 ( 254 n); score: 0.969 MATCH C04HBa0077O05.1- SGN-E373116+ 0.969 254 0.849 C PGS_C04HBa0077O05.1-_SGN-E373116+ (35804 35551) Alignment (genomic DNA sequence = upper lines): TTCTAAAAAC TCAACAACTA TTATTATCCC CAAAATCTGG AAGTCATCAT CACAAGAACA 35745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTAAAAAC TCAACAACTA TTATTATCCC CAAAATCTGG AAGTCATCAT CACAAGAACA 68 TCTACTTCAA ATTACTAAAT CTAAGAGTAT CTAAGAAGCT AAAATACATA AACAGCTAGT 35685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTACTTCAA ATTACTAAAT CTAAGAGTAT CTAAGAAGCT AAAATACATA AACAGCTAGT 128 CCATGCCGGA ACATCAAGGC ATCAAGACAT GAAGAAGAAG ATCCAGTCCA AGCTAGAAGC 35625 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATGCCGGA ACTTCAAGGC ATCAAGACAT GAAGAAGAAG ATCCAGTCCA AGCTAGAAGC 188 TTTAGCTCAC CCTGAAATCT GGTGTGATGA AGACTGGCTA GAGTTGCGGT TGGATTGAAG 35565 ||||||||| ||||||||| | ||| |||| |||||||||| |||||||||| || |||||| GTTAGCTCAC CCTGAAATCC GATGTAATGA AGACTGGCTA GAGTTGCGGT TGAGTTGAAG 248 ACGACGATAC GTTT 35551 |||||| ||| |||| ACGACGGTAC GTTT 262 hqPGS_C04HBa0077O05.1-_SGN-E373116+ (35804 35551) ******************************************************************************** EST sequence 85 -strand 219 n (File: SGN-E298638-) 1 TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGC AGTCATCATC 61 ACAAGAACAT GTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 121 ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 181 GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGA Predicted gene structure (within gDNA segment 36504 to 34896): Exon 1 35813 35595 ( 219 n); cDNA 1 219 ( 219 n); score: 0.941 MATCH C04HBa0077O05.1- SGN-E298638- 0.941 219 1.000 C PGS_C04HBa0077O05.1-_SGN-E298638- (35813 35595) Alignment (genomic DNA sequence = upper lines): TTCAATAACT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGA AGTCATCATC 35754 || | | |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGC AGTCATCATC 60 ACAAGAACAT CTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 35694 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGAACAT GTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 120 ACAGCTAGTC CATGCCGGAA CATCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 35634 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 180 GCTAGAAGCT TTAGCTCACC CTGAAATCTG GTGTGATGA 35595 ||||||||| |||||||||| |||||||| | ||| |||| GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGA 219 hqPGS_C04HBa0077O05.1-_SGN-E298638- (35813 35595) ******************************************************************************** EST sequence 62 -strand 402 n (File: SGN-E352844-) 1 TTTTTTTTAT AAAAACCAAT TCAATAACTA TTATTTCCCA AAATCTGGAA GTTATCATCA 61 CAAGAACATC TACTTCGAAT TACTAAATCT AAGAGTATCT AAGAAGCTAA AATACATAAA 121 CAGCTAGTCC ATGCCGGAAC TTCAAGGCAT CAAGACATGA AGAAGAAGAT CCAGTCCAAG 181 CTAGAAGCTT TGTTTTATCG AAAAAAGGTG ATTTTTCGAA AAGAGTTTGT TTTATTTTAA 241 AGTATTTTTC GACTTTAGGA GTCGCCACTT AATTTTTAAG AAAAATCAAG AAAACTCATT 301 CTCAAAACAA TTTAAACAGA AAAGTCGTTT TGAAAATATT TTTTAGGATT CGGGATTCTT 361 ATTAGCGTCT TAGGAAGGTG TTTAAGGCAC CTAAGACACT CC Predicted gene structure (within gDNA segment 36746 to 32912): Exon 1 35794 35622 ( 173 n); cDNA 21 191 ( 171 n); score: 0.965 MATCH C04HBa0077O05.1- SGN-E352844- 0.965 173 0.430 C PGS_C04HBa0077O05.1-_SGN-E352844- (35794 35622) Alignment (genomic DNA sequence = upper lines): TCAACAACTA TTATTATCCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTACTTCAA 35735 |||| ||||| ||||| | || |||||||||| |||| ||||| |||||||||| |||||||| | TCAATAACTA TTATT-T-CC CAAAATCTGG AAGTTATCAT CACAAGAACA TCTACTTCGA 78 ATTACTAAAT CTAAGAGTAT CTAAGAAGCT AAAATACATA AACAGCTAGT CCATGCCGGA 35675 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTACTAAAT CTAAGAGTAT CTAAGAAGCT AAAATACATA AACAGCTAGT CCATGCCGGA 138 ACATCAAGGC ATCAAGACAT GAAGAAGAAG ATCCAGTCCA AGCTAGAAGC TTT 35622 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ACTTCAAGGC ATCAAGACAT GAAGAAGAAG ATCCAGTCCA AGCTAGAAGC TTT 191 hqPGS_C04HBa0077O05.1-_SGN-E352844- (35794 35622) ******************************************************************************** EST sequence 113 -strand 666 n (File: SGN-E368629-) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTATAA AAACCAATTC AATAACTATT ATTTCCCAAA 61 ATCTGGAAGT TATCATCACA AGAACATCTA CTTCGAATTA CTAAATCTAG AAGTATCTAA 121 GAGCCTAAAA TACATAACAC AGTTAGTCCA TGCCGAAACT TCAAGGCATC AAGACATAAA 181 GAAGAAGATC CAGTCCAAGC TAGAAGCTTT GTTTTATCGA AAAAAGGTGA TTTTTCGAAA 241 AGAGTTTGTT TTATTTTAAA GTATTTTTCG ACTTTAGGAG TCGCCACTTA ATTTTTAAGA 301 AAAATCAAGA AAACTCATTC TCAAAACAAT TTAAACAGAA AAGTCGTTTT GAAAATATTT 361 TTTAGGATTC GGGATTCTTA TTAGCGTCTT AGGAAGGTGT TTAAGGCACC TAAGACACTC 421 CGTTAAATAC GGTTTTCCAA CGACTAACTT ATTTGATTAT TTTTATTTTT ACCCTTTGCA 481 AATTTATTTG AACTTTTATC ACGATTTACT TAGCCAAACT TTGCAAATTT GAGATATTAA 541 TCTTTTAAGA TTCCGTCTTA GTTAAACTTT CTAAGCCTTA ACTCTCTAAG CAGACTTTCA 601 AATTTTAAAC CTCTATCGTT TCAAAACTTC AATTTTTATT TTTTAGTTTC ATAAAGCAAA 661 AGGCGT Predicted gene structure (within gDNA segment 36926 to 30462): Exon 1 35794 35622 ( 173 n); cDNA 39 210 ( 172 n); score: 0.910 PPA cDNA 28 1 MATCH C04HBa0077O05.1- SGN-E368629- 0.910 173 0.260 C PGS_C04HBa0077O05.1-_SGN-E368629- (35794 35622) Alignment (genomic DNA sequence = upper lines): TCAACAACTA TTATTATCCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTACTTCAA 35735 |||| ||||| ||||| | || |||||||||| |||| ||||| |||||||||| |||||||| | TCAATAACTA TTATT-T-CC CAAAATCTGG AAGTTATCAT CACAAGAACA TCTACTTCGA 96 ATTACTAAAT CTAAGAGTAT CTAAGAAGCT AAAATACATA A-ACAGCTAG TCCATGCCGG 35676 |||||||||| ||| ||||| |||||| || |||||||||| | |||| ||| ||||||||| ATTACTAAAT CTAGAAGTAT CTAAGAGCCT AAAATACATA ACACAGTTAG TCCATGCCGA 156 AACATCAAGG CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CTTT 35622 ||| |||||| |||||||||| | |||||||| |||||||||| |||||||||| |||| AACTTCAAGG CATCAAGACA TAAAGAAGAA GATCCAGTCC AAGCTAGAAG CTTT 210 hqPGS_C04HBa0077O05.1-_SGN-E368629- (35794 35622) ******************************************************************************** EST sequence 106 -strand 620 n (File: SGN-E238551-) 1 CTATTATTTC CCAAAATCTG GAAGTTATCA TCACAAGAAC ATCTACTTCG AATTACTAAA 61 TCTAAGAGTA TCTAAGAAGC TAAAATACAT AAACAGCTAG TCCATGCCGG AACTTCAAGG 121 CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CTTTGTTTTA TCGAAAAAAG 181 GTGATTTTTC GAAAAGAGTT TGTTTTATTT TAAAGTATTT TTCGACTTTA GGAGTCGCCA 241 CTTAATTTTT AAGAAAAATC AAGAAAACTC ATTCTCAAAA CAATTTAAAC AGAAAAGTCG 301 TTTTGAAAAT ATTTTTTAGG ATTCGGGATT CTTATTAGCG TCTTAGGAAG GTGTTTAAGG 361 CACCTAAGAC ACTCCGTTAA ATACGGTTTT CCAACGACTA ACTTATTTGA TTATTTTTAT 421 TTTTACCCTT TGCAAATTTA TTTGAACTTT TATCACGATT TACTTAGCCA AACTTTGCAA 481 ATTTGAGATA TTAATCTTTT AAGATTCCGT CTTAGTTAAA CTTTCTAAGC CTTAACTCTC 541 TAAGCAGACT TTCAAATTTT AAACCTCTAT CGTTTCAAAA CTTCAATTTT TATTTTTTAG 601 TTTCATAAAG CAAAAGGCGT Predicted gene structure (within gDNA segment 36476 to 30462): Exon 1 35787 35622 ( 166 n); cDNA 1 164 ( 164 n); score: 0.970 MATCH C04HBa0077O05.1- SGN-E238551- 0.970 166 0.268 C PGS_C04HBa0077O05.1-_SGN-E238551- (35787 35622) Alignment (genomic DNA sequence = upper lines): CTATTATTAT CCCCAAAATC TGGAAGTCAT CATCACAAGA ACATCTACTT CAAATTACTA 35728 |||||||| | ||||||||| ||||||| || |||||||||| |||||||||| | |||||||| CTATTATT-T -CCCAAAATC TGGAAGTTAT CATCACAAGA ACATCTACTT CGAATTACTA 58 AATCTAAGAG TATCTAAGAA GCTAAAATAC ATAAACAGCT AGTCCATGCC GGAACATCAA 35668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| AATCTAAGAG TATCTAAGAA GCTAAAATAC ATAAACAGCT AGTCCATGCC GGAACTTCAA 118 GGCATCAAGA CATGAAGAAG AAGATCCAGT CCAAGCTAGA AGCTTT 35622 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGCATCAAGA CATGAAGAAG AAGATCCAGT CCAAGCTAGA AGCTTT 164 hqPGS_C04HBa0077O05.1-_SGN-E238551- (35787 35622) ******************************************************************************** EST sequence 82 -strand 795 n (File: SGN-E542436-) 1 GCTGCACTGC CTGTGCTTGT GCAGGACAGG AAGTGGGTCT TGTTATACAG TACATGGAAG 61 AATGGAATAT CACTCTCGAC TTTATACAGG AGAAGCCTAC TCTGGCCTGG CATCAGTCTG 121 CTGGTTGTGG GGGACCATAA TGGTGCTGTG TTTGGTGGGC TAGTTGATGC ACCTTTAAAG 181 CCAACAACAA AGAGAAGATA TCAGGGTACA AACAATTCAT TTGTTTTCTC AAATGTATCT 241 GGCCAACCTG TCATATTTCG TCCCACAGGT GTCAATCGCT ATTTTACTGT CTGTTCCACG 301 GAGTATTTAG CTTTGGGAGG CGGTGGCCAT TTTGCTCTCT ACTTAGACGG GGATCTGCTA 361 ACAGGTTCAA GTGCAACATC AGAAACTTAT GGAAATTCTT GTTTGGCACA TACTGAAGAC 421 TTTGAAGTTA AGGAAGTTGA GTTATGGGGC TTTGTATATG CTTCCAAGTA TGAAGAGATG 481 GTTTCGATTT TGCGAACAGA GACACCTGGA ATTTGCCGCT GGTAAACACA GTGTTAAAGA 541 TGCTTGCTTT CCAGTCTAAA TGATTGTTTC TGTTTGGTGC CCATGGTTGC GGACAGCACC 601 ACATGGAATG CAGGATAGGT TTTGTACATA TGTTTTCACA TGTTCAGCAA CAATTTTACA 661 CTTGTATAGG TGTGTTTCTT TACATGTACA GTGAACCATT TTGATAAAAT TCTCTTTGCT 721 TCGGTAAATG AGAATGAACG TGAGAGCTAA ATGAAAATAT TCATTAAACT TTCTCCAGAA 781 AAAAAAAAAA AGAAA Predicted gene structure (within gDNA segment 51266 to 46650): Exon 1 50656 50607 ( 50 n); cDNA 1 50 ( 50 n); score: 1.000 Intron 1 50606 50493 ( 114 n); Pd: 0.580 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 2 50492 50420 ( 73 n); cDNA 51 123 ( 73 n); score: 1.000 Intron 2 50419 49422 ( 998 n); Pd: 0.984 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 49421 49341 ( 81 n); cDNA 124 204 ( 81 n); score: 1.000 Intron 3 49340 49255 ( 86 n); Pd: 0.843 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 4 49254 49191 ( 64 n); cDNA 205 268 ( 64 n); score: 1.000 Intron 4 49190 48631 ( 560 n); Pd: 0.998 (s: 1.00), Pa: 0.458 (s: 1.00) Exon 5 48630 48543 ( 88 n); cDNA 269 356 ( 88 n); score: 1.000 Intron 5 48542 48139 ( 404 n); Pd: 1.000 (s: 1.00), Pa: 0.392 (s: 1.00) Exon 6 48138 48054 ( 85 n); cDNA 357 441 ( 85 n); score: 1.000 Intron 6 48053 47829 ( 225 n); Pd: 0.770 (s: 1.00), Pa: 0.890 (s: 1.00) Exon 7 47828 47488 ( 341 n); cDNA 442 781 ( 340 n); score: 0.997 PPA cDNA 782 795 MATCH C04HBa0077O05.1- SGN-E542436- 0.999 782 0.984 C PGS_C04HBa0077O05.1-_SGN-E542436- (50656 50607,50492 50420,49421 49341,49254 49191,48630 48543,48138 48054,47828 47488) Alignment (genomic DNA sequence = upper lines): GCTGCACTGC CTGTGCTTGT GCAGGACAGG AAGTGGGTCT TGTTATACAG GCAGGGATCC 50597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCACTGC CTGTGCTTGT GCAGGACAGG AAGTGGGTCT TGTTATACAG .......... 50 TGAGTTGTAT TAAATTTGAA TGCTCTCTGA GCAGCTCTAT GCTTATTTTC TCTCCTATTT 50537 .......... .......... .......... .......... .......... .......... 50 CCAATTTTAT AGTGGATTCT AACTTCTCAA TTCTATTTTG CCAGTACATG GAAGAATGGA 50477 |||||| |||||||||| .......... .......... .......... .......... ....TACATG GAAGAATGGA 66 ATATCACTCT CGACTTTATA CAGGAGAAGC CTACTCTGGC CTGGCATCAG TCTGCTGGTA 50417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ATATCACTCT CGACTTTATA CAGGAGAAGC CTACTCTGGC CTGGCATCAG TCTGCTG... 123 ATTAACTGAA GACTTGTAAA GAGATATGCA TTGCTCATTA AGAATTATGT AACAGGAGTT 50357 .......... .......... .......... .......... .......... .......... 123 CCACATTGAA GAGCTGTTTT AATTTACATT TTGAACAATT CTTTGATTGC TTATGGTCTA 50297 .......... .......... .......... .......... .......... .......... 123 GATGAATAAG AACTATTATT TTGTTTTCTG TATGTGTGTG TATATCACTT CCTGAAGTAA 50237 .......... .......... .......... .......... .......... .......... 123 CCACCAGATA ATCTCCTTCA CTTTTATCAG TATCTGTTGA ACTTAAAAAA GAGTAGAATC 50177 .......... .......... .......... .......... .......... .......... 123 CCTGTGCTTT CTTGTATGTG GAATAAGATC CAGCTGTTTT AATATATGTT CAAATACTCC 50117 .......... .......... .......... .......... .......... .......... 123 AGAGTTTTGC TATCTTTTGA TGCCCTAACT TATTAGTGTT GCTGTTGCAG TCCAAATCAT 50057 .......... .......... .......... .......... .......... .......... 123 ATTTTCAGAA ACCGAGTATA GGTCAGCTAT ATAATATACC TCTTACTAAA AAGACAATTT 49997 .......... .......... .......... .......... .......... .......... 123 GTCATCGTTT CATAACAGAT CTAACCAATG CTTCTCTTGG ATGATAAACT CATTGTATAG 49937 .......... .......... .......... .......... .......... .......... 123 TAATTTGTTC CTTCTGATAT TTCTGGAACT AAGTTTTCTG GGTTTGGTAT TTCCTTTCTG 49877 .......... .......... .......... .......... .......... .......... 123 CCCTTGTTTT TGATATGCGT TTTTTGAACC GAGTGTCTAT GGAAACAGCC TTTCTATCTT 49817 .......... .......... .......... .......... .......... .......... 123 CACAAGGTAG GGGCAAGGCT GCATACAATG TACCCACCAC CCTCCCCACA CTAGGTATGT 49757 .......... .......... .......... .......... .......... .......... 123 TGTTGTCGTA AGATTCCTGG CTTCGTTATG ATTTGAGAAA GTAAATGATA GATCTTGAGA 49697 .......... .......... .......... .......... .......... .......... 123 TGGAAATGCC TCTGAAATTT GATGCGAGGC ATTGATAAAG TCAAAGTATT GTCACTTTCG 49637 .......... .......... .......... .......... .......... .......... 123 ATTTTGATTT CTTGCTGGTT GCTCTTTTTG TATGAGTCCA AGTGCTCTAT CTCTATGCAT 49577 .......... .......... .......... .......... .......... .......... 123 TATTGAAGTT AAAAGCATTG GTGTCGGTGT CTGGTGTCTT TTGATTTTCT ATCAATGTGA 49517 .......... .......... .......... .......... .......... .......... 123 GTGGTGGACA GTCATTAAGA CTTAGAGACT TACAGATTAT TTGATCTGGC ATAAGACTCT 49457 .......... .......... .......... .......... .......... .......... 123 AGTTTTGTTT CTCTCATATT GTCCAAATCT TATAGGTTGT GGGGGACCAT AATGGTGCTG 49397 ||||| |||||||||| |||||||||| .......... .......... .......... .....GTTGT GGGGGACCAT AATGGTGCTG 148 TGTTTGGTGG GCTAGTTGAT GCACCTTTAA AGCCAACAAC AAAGAGAAGA TATCAGGTAA 49337 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TGTTTGGTGG GCTAGTTGAT GCACCTTTAA AGCCAACAAC AAAGAGAAGA TATCAG.... 204 TTCTGAGCAG AATACTTAAA ACATGTCACC TCTGCCTTTG AGTTTCCATT TGTCATCTTG 49277 .......... .......... .......... .......... .......... .......... 204 ATTTGATTTT GGTATTTAAC AGGGTACAAA CAATTCATTT GTTTTCTCAA ATGTATCTGG 49217 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GGTACAAA CAATTCATTT GTTTTCTCAA ATGTATCTGG 242 CCAACCTGTC ATATTTCGTC CCACAGGTAT CTCTCTTTTC CTTGTACTTG AACCAGACAT 49157 |||||||||| |||||||||| |||||| CCAACCTGTC ATATTTCGTC CCACAG.... .......... .......... .......... 268 TTAAAGTTTG TAGAACAAAT TTCCGTTCTT TGTTTTGTCT GCTGTCGCTA ACAAATTTAT 49097 .......... .......... .......... .......... .......... .......... 268 TTTTTAATAC ATGGGGACGG GAGTGGTCTG GTTCAGCATG TCCATATCCT CTTCTATTTG 49037 .......... .......... .......... .......... .......... .......... 268 TGGTATTGAT GGTCAGGAAG AGAATTAAAA CAGTGGTCCT CTTATGGGAA ATCTTGGGTT 48977 .......... .......... .......... .......... .......... .......... 268 CGAAACATTT TTAATACGTT GTTTACCTGA TTTACTGTCA TCTTACGATG ATGAAAATTT 48917 .......... .......... .......... .......... .......... .......... 268 TAGCTGGTGA TAGTAGTATA ACCATACAAA CTTTGAAAAA TAGATTTCGT GGTGGATACC 48857 .......... .......... .......... .......... .......... .......... 268 AAAGATATAA TGATCAAGAA TTTATTGTTT TCCAGAAATT AGTCATTTAT TCTCTCTGAA 48797 .......... .......... .......... .......... .......... .......... 268 ATCACTATTA TCCCATTTCC AGCATGATTG TTGACTGTTT CTGCTTCTGA CTTTGATTTT 48737 .......... .......... .......... .......... .......... .......... 268 TCGGTTCCTT TTGCCTTTTA TGATAATGTT TGTCCATAAG CCTTGGAACT GTTTGGAACT 48677 .......... .......... .......... .......... .......... .......... 268 CAAATCAATT ACTTGTGACA TGACATTGAC GCTGTCGCCT ATGTAGGTGT CAATCGCTAT 48617 |||| |||||||||| .......... .......... .......... .......... ......GTGT CAATCGCTAT 282 TTTACTGTCT GTTCCACGGA GTATTTAGCT TTGGGAGGCG GTGGCCATTT TGCTCTCTAC 48557 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACTGTCT GTTCCACGGA GTATTTAGCT TTGGGAGGCG GTGGCCATTT TGCTCTCTAC 342 TTAGACGGGG ATCTGTAAGA TTTCTTTCCC CTTCATTATG ATCCTTTTGT CATTGCTTTA 48497 |||||||||| |||| TTAGACGGGG ATCT...... .......... .......... .......... .......... 356 TATGTGTATG CTTTTTGACT GCTTCCTTCC TAGTATCATA ATGTCCTCCA ATAAAAGGAG 48437 .......... .......... .......... .......... .......... .......... 356 AAATAAGAGG AAAATCAAAT GCCACACACC GCCTTGGGAG TTACCTTTTT CCTGTCCCAT 48377 .......... .......... .......... .......... .......... .......... 356 TTTTGGTTGC CATGACAGGA TTTTAAAAAA ATCTTCTTAA TCTCAAGTTC ACAGCTATCA 48317 .......... .......... .......... .......... .......... .......... 356 TCATCGTCAT CATGAATATC ACCTTTTAAT ATATTTTCTG TAGAATCAGA TCTTATGATT 48257 .......... .......... .......... .......... .......... .......... 356 CCAATTTATT GCCTCTATTG CCCATAGATT AAAAAACAAG GGGAAATCAA ATTCTATTGA 48197 .......... .......... .......... .......... .......... .......... 356 GTATGTTAAA GATATCTTTG ACTCGGATAA ATTAGCTCAA CAAACTTCAC TTTTCCAGGC 48137 || .......... .......... .......... .......... .......... ........GC 358 TAACAGGTTC AAGTGCAACA TCAGAAACTT ATGGAAATTC TTGTTTGGCA CATACTGAAG 48077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACAGGTTC AAGTGCAACA TCAGAAACTT ATGGAAATTC TTGTTTGGCA CATACTGAAG 418 ACTTTGAAGT TAAGGAAGTT GAGGTAGTCT CGTAACTGCA TCTCTGTATG TGTTCGCACG 48017 |||||||||| |||||||||| ||| ACTTTGAAGT TAAGGAAGTT GAG....... .......... .......... .......... 441 CATGCACATT TTGTGTTCTG CCTTGTCTGT CTCTTCACTA TCTCTATATG TTATAGTTAC 47957 .......... .......... .......... .......... .......... .......... 441 ATGTGTGTAT CTGTCAGGGC AGTTTGTTTG AAATTAGCTC TATGAAATTT ACCTTTCAAG 47897 .......... .......... .......... .......... .......... .......... 441 AGTACAATAT GCATTTAACA TGAGAAATTA ATTTTTAATG TGATATCCAT TTATCATATC 47837 .......... .......... .......... .......... .......... .......... 441 ATATGCAGTT ATGGGGCTTT GTATATGCTT CCAAGTATGA AGAGATGGTT TCGATTTTGC 47777 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TT ATGGGGCTTT GTATATGCTT CCAAGTATGA AGAGATGGTT TCGATTTTGC 493 GAACAGAGAC ACCTGGAATT TGCCGCTGGT AAACACAGTG TTAAAGATGC TTGCTTTCCA 47717 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACAGAGAC ACCTGGAATT TGCCGCTGGT AAACACAGTG TTAAAGATGC TTGCTTTCCA 553 GTCTAAATGA TTGTTTCTGT TTGGTGCCCA TGGTTGCGGA CAGCACCACA TGGAATGCAG 47657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTAAATGA TTGTTTCTGT TTGGTGCCCA TGGTTGCGGA CAGCACCACA TGGAATGCAG 613 GATAGGTTTT GTACATATGT TTTCACATGT TCAGCAACAA TTTTACACTT GTATAGGTGT 47597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAGGTTTT GTACATATGT TTTCACATGT TCAGCAACAA TTTTACACTT GTATAGGTGT 673 GTTTCTTTAC ATGTACAGTG AACCATTTTG ATAAAATTCT CTTTGCTTCG GTAAATGAGA 47537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCTTTAC ATGTACAGTG AACCATTTTG ATAAAATTCT CTTTGCTTCG GTAAATGAGA 733 ATGAACGTGA GAGCTAAATG AAAATATTCA TTAAACTGTT CTCCAGAAA 47488 |||||||||| |||||||||| |||||||||| ||||||| || ||||||||| ATGAACGTGA GAGCTAAATG AAAATATTCA TTAAACT-TT CTCCAGAAA 781 hqPGS_C04HBa0077O05.1-_SGN-E542436- (50656 50607,50492 50420,49421 49341,49254 49191,48630 48543,48138 48054,47828 47488) ******************************************************************************** EST sequence 240 +strand 794 n (File: SGN-E542439+) 1 TGTTGTCATA AAGGAGAATA CTACTTATAG CTTTTTAGAA GTAATGGGTA GTGAAAATCA 61 ACAGCAATTT GAAGAGAATC TTCTTCATAA TCATAATCAT CAGGAGCAGC AGCAGCAGCA 121 GAGGAAGAAC CGTTCTTTAA GGAGTAAAGC TGCGCACTTT GTATCGGATG TTGCTACTGT 181 TATTCTTAAC CCCATATCTG ATAAACCCTT AAAGCCCAGA CCACCACCTT TGCCTGAAGA 241 TGGATCTGAT TCTGACGGAA GTAAGCATGA GTCAAATGCA GAGCTCTTCA CCAAGTTGCT 301 AGACTAGGCG GCTTTAGGAA TCAGGGTTCG GCAAAGGGCA GCTCTGATAT GGTGTTTGAT 361 GATGGAAGTA ATTCTAAAGT TTCCGGAGAT AATCAAATAC CTTTGGAAGA TATGAATAAG 421 AAACCTCTTC TGAACAATCT TCCGGGAACT TCTGAGCCTT CAGTTCTCCT CACTGAGAAG 481 GCACGAATTT CTCTTTATGC TGCACTGCCT GTGCTTGTGC AGGACAGGAA GTGGGTCTTG 541 TTATACAGTA CATGGAAGAA TGGAATATCA CTCTCGACTT TATACAGGAG AAGCCTACTC 601 TGGCCTGGCA TCAGTCTGCT GGTTGTGGGG GACCATAATG GTGCTGTGTT TGGTGGGCTA 661 GTTGATGCAC CTTTAAAGCC AACAACAAAG AGAAGATATC AGGGTACAAA CAATTCATTT 721 GTTTTCTCAA ATGTATCTGG CCAACCTGTC ATATTTCGTC CCACAGGTGT CAATCGCTAT 781 TTTACTGTCT GTTC Predicted gene structure (within gDNA segment 52548 to 47993): Exon 1 51948 51714 ( 235 n); cDNA 1 235 ( 235 n); score: 1.000 Intron 1 51713 51137 ( 577 n); Pd: 0.957 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 51136 51089 ( 48 n); cDNA 236 283 ( 48 n); score: 1.000 Intron 2 51088 50872 ( 217 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 3 50871 50607 ( 265 n); cDNA 284 548 ( 265 n); score: 1.000 Intron 3 50606 50493 ( 114 n); Pd: 0.580 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 4 50492 50420 ( 73 n); cDNA 549 621 ( 73 n); score: 1.000 Intron 4 50419 49422 ( 998 n); Pd: 0.984 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 49421 49341 ( 81 n); cDNA 622 702 ( 81 n); score: 1.000 Intron 5 49340 49255 ( 86 n); Pd: 0.843 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 6 49254 49191 ( 64 n); cDNA 703 766 ( 64 n); score: 1.000 Intron 6 49190 48631 ( 560 n); Pd: 0.998 (s: 1.00), Pa: 0.458 (s: 0) Exon 7 48630 48603 ( 28 n); cDNA 767 794 ( 28 n); score: 1.000 MATCH C04HBa0077O05.1- SGN-E542439+ 1.000 794 1.000 C PGS_C04HBa0077O05.1-_SGN-E542439+ (51948 51714,51136 51089,50871 50607,50492 50420,49421 49341,49254 49191,48630 48603) Alignment (genomic DNA sequence = upper lines): TGTTGTCATA AAGGAGAATA CTACTTATAG CTTTTTAGAA GTAATGGGTA GTGAAAATCA 51889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGTCATA AAGGAGAATA CTACTTATAG CTTTTTAGAA GTAATGGGTA GTGAAAATCA 60 ACAGCAATTT GAAGAGAATC TTCTTCATAA TCATAATCAT CAGGAGCAGC AGCAGCAGCA 51829 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCAATTT GAAGAGAATC TTCTTCATAA TCATAATCAT CAGGAGCAGC AGCAGCAGCA 120 GAGGAAGAAC CGTTCTTTAA GGAGTAAAGC TGCGCACTTT GTATCGGATG TTGCTACTGT 51769 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAAGAAC CGTTCTTTAA GGAGTAAAGC TGCGCACTTT GTATCGGATG TTGCTACTGT 180 TATTCTTAAC CCCATATCTG ATAAACCCTT AAAGCCCAGA CCACCACCTT TGCCTGTAAG 51709 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TATTCTTAAC CCCATATCTG ATAAACCCTT AAAGCCCAGA CCACCACCTT TGCCT..... 235 TTTTGGGGGT TCTTGATAAT TGAAATGATA TATGTATATG TTTTGTATTC TAAATGAAAT 51649 .......... .......... .......... .......... .......... .......... 235 TTTGATCTTG TTGGGGTTTG TAGTATGATC TTTTGATGAT AATTTCAGCT CTTGAACACC 51589 .......... .......... .......... .......... .......... .......... 235 CAATTTGGAA TTGATCAGAA ATGAGGGTTT AGGTTGACTA TTATAGTGTA GCCTATGAGC 51529 .......... .......... .......... .......... .......... .......... 235 ATATAATCTG TGATCTTTAG CTGAACTTGG TAAGTTGTCA ATTTTTGTCT AACCTAGTTT 51469 .......... .......... .......... .......... .......... .......... 235 CTAGCTAGGC CTCCCAACTT TGTATGTTTT TGTTGATTTT CGAGGGAGTC AAGTCATGTC 51409 .......... .......... .......... .......... .......... .......... 235 AAATCCTAGC TTGCTTGTCT CCCTTGATTT TTCCACAATA AGGTAATTGT TGGGTCGTCT 51349 .......... .......... .......... .......... .......... .......... 235 AGTCTTGGAG GAAGAACAAG ATATGAATAG GATTGCAGCA TCATAATCAC TTCTTAGTAT 51289 .......... .......... .......... .......... .......... .......... 235 TCACTGCCCT TTTTACTGAA GATGCAGTGT GGATAACATC CTTTAATATT GGGGCATTTG 51229 .......... .......... .......... .......... .......... .......... 235 ATATACATTA TACTCTGAAA GCAAAGCAGA AGAGAGGTTC TGTTATATTC CCTACAGATT 51169 .......... .......... .......... .......... .......... .......... 235 GTATGTTAAT AGTTTTTCTT ATATTTCTTT AGGAAGATGG ATCTGATTCT GACGGAAGTA 51109 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GAAGATGG ATCTGATTCT GACGGAAGTA 263 AGCATGAGTC AAATGCAGAG GGAGATGCCA CTGATTTAGT TGACGGTCCT GATACATCTT 51049 |||||||||| |||||||||| AGCATGAGTC AAATGCAGAG .......... .......... .......... .......... 283 CTTTCTCAGC GTTCCTATAT TCACTGTTGT CGACCACAGG ATCCGAGAGT AAGCCTAACA 50989 .......... .......... .......... .......... .......... .......... 283 CTATTGGAAA ATATGATAAG CAAGATGATC GTGATGAGTC AATACCTGAA CTTACAATGA 50929 .......... .......... .......... .......... .......... .......... 283 GGGAACCTAG CAGAAGAAAA GGTATACTTT CCAGGGGTAA ACATTCCCTC GGCAGAGCTC 50869 ||| .......... .......... .......... .......... .......... .......CTC 286 TTCACCAAGT TGCTAGACTA GGCGGCTTTA GGAATCAGGG TTCGGCAAAG GGCAGCTCTG 50809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACCAAGT TGCTAGACTA GGCGGCTTTA GGAATCAGGG TTCGGCAAAG GGCAGCTCTG 346 ATATGGTGTT TGATGATGGA AGTAATTCTA AAGTTTCCGG AGATAATCAA ATACCTTTGG 50749 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGGTGTT TGATGATGGA AGTAATTCTA AAGTTTCCGG AGATAATCAA ATACCTTTGG 406 AAGATATGAA TAAGAAACCT CTTCTGAACA ATCTTCCGGG AACTTCTGAG CCTTCAGTTC 50689 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATATGAA TAAGAAACCT CTTCTGAACA ATCTTCCGGG AACTTCTGAG CCTTCAGTTC 466 TCCTCACTGA GAAGGCACGA ATTTCTCTTT ATGCTGCACT GCCTGTGCTT GTGCAGGACA 50629 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCACTGA GAAGGCACGA ATTTCTCTTT ATGCTGCACT GCCTGTGCTT GTGCAGGACA 526 GGAAGTGGGT CTTGTTATAC AGGCAGGGAT CCTGAGTTGT ATTAAATTTG AATGCTCTCT 50569 |||||||||| |||||||||| || GGAAGTGGGT CTTGTTATAC AG........ .......... .......... .......... 548 GAGCAGCTCT ATGCTTATTT TCTCTCCTAT TTCCAATTTT ATAGTGGATT CTAACTTCTC 50509 .......... .......... .......... .......... .......... .......... 548 AATTCTATTT TGCCAGTACA TGGAAGAATG GAATATCACT CTCGACTTTA TACAGGAGAA 50449 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......TACA TGGAAGAATG GAATATCACT CTCGACTTTA TACAGGAGAA 592 GCCTACTCTG GCCTGGCATC AGTCTGCTGG TAATTAACTG AAGACTTGTA AAGAGATATG 50389 |||||||||| |||||||||| ||||||||| GCCTACTCTG GCCTGGCATC AGTCTGCTG. .......... .......... .......... 621 CATTGCTCAT TAAGAATTAT GTAACAGGAG TTCCACATTG AAGAGCTGTT TTAATTTACA 50329 .......... .......... .......... .......... .......... .......... 621 TTTTGAACAA TTCTTTGATT GCTTATGGTC TAGATGAATA AGAACTATTA TTTTGTTTTC 50269 .......... .......... .......... .......... .......... .......... 621 TGTATGTGTG TGTATATCAC TTCCTGAAGT AACCACCAGA TAATCTCCTT CACTTTTATC 50209 .......... .......... .......... .......... .......... .......... 621 AGTATCTGTT GAACTTAAAA AAGAGTAGAA TCCCTGTGCT TTCTTGTATG TGGAATAAGA 50149 .......... .......... .......... .......... .......... .......... 621 TCCAGCTGTT TTAATATATG TTCAAATACT CCAGAGTTTT GCTATCTTTT GATGCCCTAA 50089 .......... .......... .......... .......... .......... .......... 621 CTTATTAGTG TTGCTGTTGC AGTCCAAATC ATATTTTCAG AAACCGAGTA TAGGTCAGCT 50029 .......... .......... .......... .......... .......... .......... 621 ATATAATATA CCTCTTACTA AAAAGACAAT TTGTCATCGT TTCATAACAG ATCTAACCAA 49969 .......... .......... .......... .......... .......... .......... 621 TGCTTCTCTT GGATGATAAA CTCATTGTAT AGTAATTTGT TCCTTCTGAT ATTTCTGGAA 49909 .......... .......... .......... .......... .......... .......... 621 CTAAGTTTTC TGGGTTTGGT ATTTCCTTTC TGCCCTTGTT TTTGATATGC GTTTTTTGAA 49849 .......... .......... .......... .......... .......... .......... 621 CCGAGTGTCT ATGGAAACAG CCTTTCTATC TTCACAAGGT AGGGGCAAGG CTGCATACAA 49789 .......... .......... .......... .......... .......... .......... 621 TGTACCCACC ACCCTCCCCA CACTAGGTAT GTTGTTGTCG TAAGATTCCT GGCTTCGTTA 49729 .......... .......... .......... .......... .......... .......... 621 TGATTTGAGA AAGTAAATGA TAGATCTTGA GATGGAAATG CCTCTGAAAT TTGATGCGAG 49669 .......... .......... .......... .......... .......... .......... 621 GCATTGATAA AGTCAAAGTA TTGTCACTTT CGATTTTGAT TTCTTGCTGG TTGCTCTTTT 49609 .......... .......... .......... .......... .......... .......... 621 TGTATGAGTC CAAGTGCTCT ATCTCTATGC ATTATTGAAG TTAAAAGCAT TGGTGTCGGT 49549 .......... .......... .......... .......... .......... .......... 621 GTCTGGTGTC TTTTGATTTT CTATCAATGT GAGTGGTGGA CAGTCATTAA GACTTAGAGA 49489 .......... .......... .......... .......... .......... .......... 621 CTTACAGATT ATTTGATCTG GCATAAGACT CTAGTTTTGT TTCTCTCATA TTGTCCAAAT 49429 .......... .......... .......... .......... .......... .......... 621 CTTATAGGTT GTGGGGGACC ATAATGGTGC TGTGTTTGGT GGGCTAGTTG ATGCACCTTT 49369 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GTT GTGGGGGACC ATAATGGTGC TGTGTTTGGT GGGCTAGTTG ATGCACCTTT 674 AAAGCCAACA ACAAAGAGAA GATATCAGGT AATTCTGAGC AGAATACTTA AAACATGTCA 49309 |||||||||| |||||||||| |||||||| AAAGCCAACA ACAAAGAGAA GATATCAG.. .......... .......... .......... 702 CCTCTGCCTT TGAGTTTCCA TTTGTCATCT TGATTTGATT TTGGTATTTA ACAGGGTACA 49249 |||||| .......... .......... .......... .......... .......... ....GGTACA 708 AACAATTCAT TTGTTTTCTC AAATGTATCT GGCCAACCTG TCATATTTCG TCCCACAGGT 49189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AACAATTCAT TTGTTTTCTC AAATGTATCT GGCCAACCTG TCATATTTCG TCCCACAG.. 766 ATCTCTCTTT TCCTTGTACT TGAACCAGAC ATTTAAAGTT TGTAGAACAA ATTTCCGTTC 49129 .......... .......... .......... .......... .......... .......... 766 TTTGTTTTGT CTGCTGTCGC TAACAAATTT ATTTTTTAAT ACATGGGGAC GGGAGTGGTC 49069 .......... .......... .......... .......... .......... .......... 766 TGGTTCAGCA TGTCCATATC CTCTTCTATT TGTGGTATTG ATGGTCAGGA AGAGAATTAA 49009 .......... .......... .......... .......... .......... .......... 766 AACAGTGGTC CTCTTATGGG AAATCTTGGG TTCGAAACAT TTTTAATACG TTGTTTACCT 48949 .......... .......... .......... .......... .......... .......... 766 GATTTACTGT CATCTTACGA TGATGAAAAT TTTAGCTGGT GATAGTAGTA TAACCATACA 48889 .......... .......... .......... .......... .......... .......... 766 AACTTTGAAA AATAGATTTC GTGGTGGATA CCAAAGATAT AATGATCAAG AATTTATTGT 48829 .......... .......... .......... .......... .......... .......... 766 TTTCCAGAAA TTAGTCATTT ATTCTCTCTG AAATCACTAT TATCCCATTT CCAGCATGAT 48769 .......... .......... .......... .......... .......... .......... 766 TGTTGACTGT TTCTGCTTCT GACTTTGATT TTTCGGTTCC TTTTGCCTTT TATGATAATG 48709 .......... .......... .......... .......... .......... .......... 766 TTTGTCCATA AGCCTTGGAA CTGTTTGGAA CTCAAATCAA TTACTTGTGA CATGACATTG 48649 .......... .......... .......... .......... .......... .......... 766 ACGCTGTCGC CTATGTAGGT GTCAATCGCT ATTTTACTGT CTGTTC 48603 || |||||||||| |||||||||| |||||| .......... ........GT GTCAATCGCT ATTTTACTGT CTGTTC 794 hqPGS_C04HBa0077O05.1-_SGN-E542439+ (51948 51714,51136 51089,50871 50607,50492 50420,49421 49341,49254 49191,48630 48603) ******************************************************************************** EST sequence 285 +strand 572 n (File: SGN-E302172+) 1 GTTGTCATAA AGGAGAATAC TACTTATAGC TTTTTAGAAG TAATGGGTAG TGAAAATCAA 61 CAGCAATTTG AAGAGAATCT TCTTCATAAT CATAATCATC AGGAGCAGCA GCAGCAGCAG 121 AGGAAGAACC GTTCTTTAAG GAGTAAAGCT GCGCACTTTG TATCGGATGT TGCTACTGTT 181 ATTCTTAACC CCATATCTGA TAAACCCTTA AAGCCCAGAC CACCACCTTT GCCTGAAGAT 241 GGATCTGATT CTGACGGAAG TAAGCATGAG TCAAATGCAG AGCTCTTCAC CAAGTTGCTA 301 GACTAGGCGG CTTTAGGAAT CAGGGTTCGG CAAAGGGCAG CTCTGATATG GTGTTTGATG 361 ATGGAAGTAA TTCTAAAGTT TCCGGAGATA ATCAAATACC TTTGGAAGAT ATGAATAAGA 421 AACCTCTTCT GAACAATCTT CCGGGAACTT CTGAGCCTTC AGTTCTCCTC ACTGAGAAGG 481 CACGAATTTC TCTTTATGCT GCACTGCCTG TGCTTGTGCA AGACAGGAAG TGGGTCTTGT 541 TATACAGTAC ATGGAAGAAT GGAATATCAC TC Predicted gene structure (within gDNA segment 52547 to 49747): Exon 1 51947 51714 ( 234 n); cDNA 1 234 ( 234 n); score: 1.000 Intron 1 51713 51137 ( 577 n); Pd: 0.957 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 51136 51089 ( 48 n); cDNA 235 282 ( 48 n); score: 1.000 Intron 2 51088 50872 ( 217 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 3 50871 50607 ( 265 n); cDNA 283 547 ( 265 n); score: 0.996 Intron 3 50606 50493 ( 114 n); Pd: 0.580 (s: 0.98), Pa: 0.978 (s: 0) Exon 4 50492 50468 ( 25 n); cDNA 548 572 ( 25 n); score: 1.000 MATCH C04HBa0077O05.1- SGN-E302172+ 0.998 572 1.000 C PGS_C04HBa0077O05.1-_SGN-E302172+ (51947 51714,51136 51089,50871 50607,50492 50468) Alignment (genomic DNA sequence = upper lines): GTTGTCATAA AGGAGAATAC TACTTATAGC TTTTTAGAAG TAATGGGTAG TGAAAATCAA 51888 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTCATAA AGGAGAATAC TACTTATAGC TTTTTAGAAG TAATGGGTAG TGAAAATCAA 60 CAGCAATTTG AAGAGAATCT TCTTCATAAT CATAATCATC AGGAGCAGCA GCAGCAGCAG 51828 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCAATTTG AAGAGAATCT TCTTCATAAT CATAATCATC AGGAGCAGCA GCAGCAGCAG 120 AGGAAGAACC GTTCTTTAAG GAGTAAAGCT GCGCACTTTG TATCGGATGT TGCTACTGTT 51768 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAGAACC GTTCTTTAAG GAGTAAAGCT GCGCACTTTG TATCGGATGT TGCTACTGTT 180 ATTCTTAACC CCATATCTGA TAAACCCTTA AAGCCCAGAC CACCACCTTT GCCTGTAAGT 51708 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ATTCTTAACC CCATATCTGA TAAACCCTTA AAGCCCAGAC CACCACCTTT GCCT...... 234 TTTGGGGGTT CTTGATAATT GAAATGATAT ATGTATATGT TTTGTATTCT AAATGAAATT 51648 .......... .......... .......... .......... .......... .......... 234 TTGATCTTGT TGGGGTTTGT AGTATGATCT TTTGATGATA ATTTCAGCTC TTGAACACCC 51588 .......... .......... .......... .......... .......... .......... 234 AATTTGGAAT TGATCAGAAA TGAGGGTTTA GGTTGACTAT TATAGTGTAG CCTATGAGCA 51528 .......... .......... .......... .......... .......... .......... 234 TATAATCTGT GATCTTTAGC TGAACTTGGT AAGTTGTCAA TTTTTGTCTA ACCTAGTTTC 51468 .......... .......... .......... .......... .......... .......... 234 TAGCTAGGCC TCCCAACTTT GTATGTTTTT GTTGATTTTC GAGGGAGTCA AGTCATGTCA 51408 .......... .......... .......... .......... .......... .......... 234 AATCCTAGCT TGCTTGTCTC CCTTGATTTT TCCACAATAA GGTAATTGTT GGGTCGTCTA 51348 .......... .......... .......... .......... .......... .......... 234 GTCTTGGAGG AAGAACAAGA TATGAATAGG ATTGCAGCAT CATAATCACT TCTTAGTATT 51288 .......... .......... .......... .......... .......... .......... 234 CACTGCCCTT TTTACTGAAG ATGCAGTGTG GATAACATCC TTTAATATTG GGGCATTTGA 51228 .......... .......... .......... .......... .......... .......... 234 TATACATTAT ACTCTGAAAG CAAAGCAGAA GAGAGGTTCT GTTATATTCC CTACAGATTG 51168 .......... .......... .......... .......... .......... .......... 234 TATGTTAATA GTTTTTCTTA TATTTCTTTA GGAAGATGGA TCTGATTCTG ACGGAAGTAA 51108 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GAAGATGGA TCTGATTCTG ACGGAAGTAA 263 GCATGAGTCA AATGCAGAGG GAGATGCCAC TGATTTAGTT GACGGTCCTG ATACATCTTC 51048 |||||||||| ||||||||| GCATGAGTCA AATGCAGAG. .......... .......... .......... .......... 282 TTTCTCAGCG TTCCTATATT CACTGTTGTC GACCACAGGA TCCGAGAGTA AGCCTAACAC 50988 .......... .......... .......... .......... .......... .......... 282 TATTGGAAAA TATGATAAGC AAGATGATCG TGATGAGTCA ATACCTGAAC TTACAATGAG 50928 .......... .......... .......... .......... .......... .......... 282 GGAACCTAGC AGAAGAAAAG GTATACTTTC CAGGGGTAAA CATTCCCTCG GCAGAGCTCT 50868 |||| .......... .......... .......... .......... .......... ......CTCT 286 TCACCAAGTT GCTAGACTAG GCGGCTTTAG GAATCAGGGT TCGGCAAAGG GCAGCTCTGA 50808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACCAAGTT GCTAGACTAG GCGGCTTTAG GAATCAGGGT TCGGCAAAGG GCAGCTCTGA 346 TATGGTGTTT GATGATGGAA GTAATTCTAA AGTTTCCGGA GATAATCAAA TACCTTTGGA 50748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGGTGTTT GATGATGGAA GTAATTCTAA AGTTTCCGGA GATAATCAAA TACCTTTGGA 406 AGATATGAAT AAGAAACCTC TTCTGAACAA TCTTCCGGGA ACTTCTGAGC CTTCAGTTCT 50688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATATGAAT AAGAAACCTC TTCTGAACAA TCTTCCGGGA ACTTCTGAGC CTTCAGTTCT 466 CCTCACTGAG AAGGCACGAA TTTCTCTTTA TGCTGCACTG CCTGTGCTTG TGCAGGACAG 50628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| CCTCACTGAG AAGGCACGAA TTTCTCTTTA TGCTGCACTG CCTGTGCTTG TGCAAGACAG 526 GAAGTGGGTC TTGTTATACA GGCAGGGATC CTGAGTTGTA TTAAATTTGA ATGCTCTCTG 50568 |||||||||| |||||||||| | GAAGTGGGTC TTGTTATACA G......... .......... .......... .......... 547 AGCAGCTCTA TGCTTATTTT CTCTCCTATT TCCAATTTTA TAGTGGATTC TAACTTCTCA 50508 .......... .......... .......... .......... .......... .......... 547 ATTCTATTTT GCCAGTACAT GGAAGAATGG AATATCACTC 50468 ||||| |||||||||| |||||||||| .......... .....TACAT GGAAGAATGG AATATCACTC 572 hqPGS_C04HBa0077O05.1-_SGN-E302172+ (51947 51714,51136 51089,50871 50607,50492 50468) ******************************************************************************** EST sequence 220 +strand 613 n (File: SGN-E214805+) 1 TTCCTTTTCC TTTTTAGGTA TATTCTCAAC TCTTTTTCAC CATTAATGGC GTTTTAGAGC 61 ATCACAAACC CCAAAAAAGT AGTGGAATTT GTTGTTGTCA TAAAGGAGAA TACTACTTAT 121 AGCTTTTTAG AAGTAATGGG TAGTGAAAAT CAACAGCAAT TTGAAGAGAA TCTTCTTCAT 181 AATCATAATC ATCAGGAGCA GCAGCAGCAG CAGAGGAAGA ACCGTTCTTT AAGGAGTAAA 241 GCTGCGCACT TTGTATCGGA TGTTGCTACT GTTATTCTTA ACCCCATATC TGATAAACCC 301 TTAAAGCCCA GACCACCACC TTTGCCTGAA GATGGATCTG ATTCTGACGG AAGTAAGCAT 361 GAGTCAAATG CAGAGGGAGA TGCCACTGAT TTAGTTGACG GTCCTGATAC ATCTTCTTTC 421 TCAGCGTTCC TATATTCACT GTTGTCGACC ACAGGATCCG AGAGTAAGCC TAACACTATT 481 GGAAAATATG ATAAGCAAGA TGATCGTGAT GAGTCAATAC CTGAACTTAC AATGAGGGAA 541 CCTAGCAGAA GAAAAGGTAT ACTTTCCAGG GGTAAACATT CCCTCGGCAG AGCTCTTCAC 601 CAAGTTGCTA GAC Predicted gene structure (within gDNA segment 52640 to 50241): Exon 1 52040 51714 ( 327 n); cDNA 1 327 ( 327 n); score: 1.000 Intron 1 51713 51137 ( 577 n); Pd: 0.957 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 51136 50851 ( 286 n); cDNA 328 613 ( 286 n); score: 1.000 MATCH C04HBa0077O05.1- SGN-E214805+ 1.000 613 1.000 C PGS_C04HBa0077O05.1-_SGN-E214805+ (52040 51714,51136 50851) Alignment (genomic DNA sequence = upper lines): TTCCTTTTCC TTTTTAGGTA TATTCTCAAC TCTTTTTCAC CATTAATGGC GTTTTAGAGC 51981 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTTTTCC TTTTTAGGTA TATTCTCAAC TCTTTTTCAC CATTAATGGC GTTTTAGAGC 60 ATCACAAACC CCAAAAAAGT AGTGGAATTT GTTGTTGTCA TAAAGGAGAA TACTACTTAT 51921 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACAAACC CCAAAAAAGT AGTGGAATTT GTTGTTGTCA TAAAGGAGAA TACTACTTAT 120 AGCTTTTTAG AAGTAATGGG TAGTGAAAAT CAACAGCAAT TTGAAGAGAA TCTTCTTCAT 51861 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTTTTAG AAGTAATGGG TAGTGAAAAT CAACAGCAAT TTGAAGAGAA TCTTCTTCAT 180 AATCATAATC ATCAGGAGCA GCAGCAGCAG CAGAGGAAGA ACCGTTCTTT AAGGAGTAAA 51801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCATAATC ATCAGGAGCA GCAGCAGCAG CAGAGGAAGA ACCGTTCTTT AAGGAGTAAA 240 GCTGCGCACT TTGTATCGGA TGTTGCTACT GTTATTCTTA ACCCCATATC TGATAAACCC 51741 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCGCACT TTGTATCGGA TGTTGCTACT GTTATTCTTA ACCCCATATC TGATAAACCC 300 TTAAAGCCCA GACCACCACC TTTGCCTGTA AGTTTTGGGG GTTCTTGATA ATTGAAATGA 51681 |||||||||| |||||||||| ||||||| TTAAAGCCCA GACCACCACC TTTGCCT... .......... .......... .......... 327 TATATGTATA TGTTTTGTAT TCTAAATGAA ATTTTGATCT TGTTGGGGTT TGTAGTATGA 51621 .......... .......... .......... .......... .......... .......... 327 TCTTTTGATG ATAATTTCAG CTCTTGAACA CCCAATTTGG AATTGATCAG AAATGAGGGT 51561 .......... .......... .......... .......... .......... .......... 327 TTAGGTTGAC TATTATAGTG TAGCCTATGA GCATATAATC TGTGATCTTT AGCTGAACTT 51501 .......... .......... .......... .......... .......... .......... 327 GGTAAGTTGT CAATTTTTGT CTAACCTAGT TTCTAGCTAG GCCTCCCAAC TTTGTATGTT 51441 .......... .......... .......... .......... .......... .......... 327 TTTGTTGATT TTCGAGGGAG TCAAGTCATG TCAAATCCTA GCTTGCTTGT CTCCCTTGAT 51381 .......... .......... .......... .......... .......... .......... 327 TTTTCCACAA TAAGGTAATT GTTGGGTCGT CTAGTCTTGG AGGAAGAACA AGATATGAAT 51321 .......... .......... .......... .......... .......... .......... 327 AGGATTGCAG CATCATAATC ACTTCTTAGT ATTCACTGCC CTTTTTACTG AAGATGCAGT 51261 .......... .......... .......... .......... .......... .......... 327 GTGGATAACA TCCTTTAATA TTGGGGCATT TGATATACAT TATACTCTGA AAGCAAAGCA 51201 .......... .......... .......... .......... .......... .......... 327 GAAGAGAGGT TCTGTTATAT TCCCTACAGA TTGTATGTTA ATAGTTTTTC TTATATTTCT 51141 .......... .......... .......... .......... .......... .......... 327 TTAGGAAGAT GGATCTGATT CTGACGGAAG TAAGCATGAG TCAAATGCAG AGGGAGATGC 51081 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GAAGAT GGATCTGATT CTGACGGAAG TAAGCATGAG TCAAATGCAG AGGGAGATGC 383 CACTGATTTA GTTGACGGTC CTGATACATC TTCTTTCTCA GCGTTCCTAT ATTCACTGTT 51021 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTGATTTA GTTGACGGTC CTGATACATC TTCTTTCTCA GCGTTCCTAT ATTCACTGTT 443 GTCGACCACA GGATCCGAGA GTAAGCCTAA CACTATTGGA AAATATGATA AGCAAGATGA 50961 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGACCACA GGATCCGAGA GTAAGCCTAA CACTATTGGA AAATATGATA AGCAAGATGA 503 TCGTGATGAG TCAATACCTG AACTTACAAT GAGGGAACCT AGCAGAAGAA AAGGTATACT 50901 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTGATGAG TCAATACCTG AACTTACAAT GAGGGAACCT AGCAGAAGAA AAGGTATACT 563 TTCCAGGGGT AAACATTCCC TCGGCAGAGC TCTTCACCAA GTTGCTAGAC 50851 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCAGGGGT AAACATTCCC TCGGCAGAGC TCTTCACCAA GTTGCTAGAC 613 hqPGS_C04HBa0077O05.1-_SGN-E214805+ (52040 51714,51136 50851) ******************************************************************************** EST sequence 178 +strand 567 n (File: SGN-E304534+) 1 CTTTCTCCTA ATATTCCACC CACTTTCCTT TTCCTTTTTA GGTATATTCT CAACTCTTTT 61 TCACCATTAA TGGCGTTTTA GAGCATTACA AACCCCACAA AAGTAGTGGA ATTTGTTGTT 121 GTCATAAAGG AGAATACTAC TTATAGCTTT TTAGAAGTAA TGGGTAGTGA AAATCAACAG 181 CAATTTGAAG AGAATCTTCT TCATAATCAT AATCATCAGG AGCAGCAGCA GCAGCAGAGG 241 AAGAACCGTT CTTTAAAGAG TAAAGCTGCG CACTTTGTAT CGGATGTTGC TACTGTTATT 301 CTTAACCCCA TATCTGATAA ACCCTTAAAG CCCAGACCAC CACCTTTGCC TGAAGATGGA 361 TCTGATTCTG ACGGAAGTAA GCATGAGTCA AATGCAGAGG GAGATGCCAC TGATTTAGTT 421 GACGGTCCTG ATACATCTTC TTTCTCAGCG TTCCTATATT CACTGTTGTC GACCACAAGA 481 TCCGAGAGTA AGCCTAACAC TATTGGAAAA TATGATAAGC AAGATGATCG TGATGAGTCA 541 ATACCTGAAC TTACAATGAG GGAACCT Predicted gene structure (within gDNA segment 52664 to 50311): Exon 1 52064 51714 ( 351 n); cDNA 1 351 ( 351 n); score: 0.991 Intron 1 51713 51137 ( 577 n); Pd: 0.957 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 51136 50921 ( 216 n); cDNA 352 567 ( 216 n); score: 0.995 MATCH C04HBa0077O05.1- SGN-E304534+ 0.993 567 1.000 C PGS_C04HBa0077O05.1-_SGN-E304534+ (52064 51714,51136 50921) Alignment (genomic DNA sequence = upper lines): CTTTCTCCTA ATATTCCACC CACTTTCCTT TTCCTTTTTA GGTATATTCT CAACTCTTTT 52005 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCTCCTA ATATTCCACC CACTTTCCTT TTCCTTTTTA GGTATATTCT CAACTCTTTT 60 TCACCATTAA TGGCGTTTTA GAGCATCACA AACCCCAAAA AAGTAGTGGA ATTTGTTGTT 51945 |||||||||| |||||||||| |||||| ||| ||||||| || |||||||||| |||||||||| TCACCATTAA TGGCGTTTTA GAGCATTACA AACCCCACAA AAGTAGTGGA ATTTGTTGTT 120 GTCATAAAGG AGAATACTAC TTATAGCTTT TTAGAAGTAA TGGGTAGTGA AAATCAACAG 51885 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATAAAGG AGAATACTAC TTATAGCTTT TTAGAAGTAA TGGGTAGTGA AAATCAACAG 180 CAATTTGAAG AGAATCTTCT TCATAATCAT AATCATCAGG AGCAGCAGCA GCAGCAGAGG 51825 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTTGAAG AGAATCTTCT TCATAATCAT AATCATCAGG AGCAGCAGCA GCAGCAGAGG 240 AAGAACCGTT CTTTAAGGAG TAAAGCTGCG CACTTTGTAT CGGATGTTGC TACTGTTATT 51765 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAACCGTT CTTTAAAGAG TAAAGCTGCG CACTTTGTAT CGGATGTTGC TACTGTTATT 300 CTTAACCCCA TATCTGATAA ACCCTTAAAG CCCAGACCAC CACCTTTGCC TGTAAGTTTT 51705 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | CTTAACCCCA TATCTGATAA ACCCTTAAAG CCCAGACCAC CACCTTTGCC T......... 351 GGGGGTTCTT GATAATTGAA ATGATATATG TATATGTTTT GTATTCTAAA TGAAATTTTG 51645 .......... .......... .......... .......... .......... .......... 351 ATCTTGTTGG GGTTTGTAGT ATGATCTTTT GATGATAATT TCAGCTCTTG AACACCCAAT 51585 .......... .......... .......... .......... .......... .......... 351 TTGGAATTGA TCAGAAATGA GGGTTTAGGT TGACTATTAT AGTGTAGCCT ATGAGCATAT 51525 .......... .......... .......... .......... .......... .......... 351 AATCTGTGAT CTTTAGCTGA ACTTGGTAAG TTGTCAATTT TTGTCTAACC TAGTTTCTAG 51465 .......... .......... .......... .......... .......... .......... 351 CTAGGCCTCC CAACTTTGTA TGTTTTTGTT GATTTTCGAG GGAGTCAAGT CATGTCAAAT 51405 .......... .......... .......... .......... .......... .......... 351 CCTAGCTTGC TTGTCTCCCT TGATTTTTCC ACAATAAGGT AATTGTTGGG TCGTCTAGTC 51345 .......... .......... .......... .......... .......... .......... 351 TTGGAGGAAG AACAAGATAT GAATAGGATT GCAGCATCAT AATCACTTCT TAGTATTCAC 51285 .......... .......... .......... .......... .......... .......... 351 TGCCCTTTTT ACTGAAGATG CAGTGTGGAT AACATCCTTT AATATTGGGG CATTTGATAT 51225 .......... .......... .......... .......... .......... .......... 351 ACATTATACT CTGAAAGCAA AGCAGAAGAG AGGTTCTGTT ATATTCCCTA CAGATTGTAT 51165 .......... .......... .......... .......... .......... .......... 351 GTTAATAGTT TTTCTTATAT TTCTTTAGGA AGATGGATCT GATTCTGACG GAAGTAAGCA 51105 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA AGATGGATCT GATTCTGACG GAAGTAAGCA 383 TGAGTCAAAT GCAGAGGGAG ATGCCACTGA TTTAGTTGAC GGTCCTGATA CATCTTCTTT 51045 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGTCAAAT GCAGAGGGAG ATGCCACTGA TTTAGTTGAC GGTCCTGATA CATCTTCTTT 443 CTCAGCGTTC CTATATTCAC TGTTGTCGAC CACAGGATCC GAGAGTAAGC CTAACACTAT 50985 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| CTCAGCGTTC CTATATTCAC TGTTGTCGAC CACAAGATCC GAGAGTAAGC CTAACACTAT 503 TGGAAAATAT GATAAGCAAG ATGATCGTGA TGAGTCAATA CCTGAACTTA CAATGAGGGA 50925 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAAATAT GATAAGCAAG ATGATCGTGA TGAGTCAATA CCTGAACTTA CAATGAGGGA 563 ACCT 50921 |||| ACCT 567 hqPGS_C04HBa0077O05.1-_SGN-E304534+ (52064 51714,51136 50921) ******************************************************************************** EST sequence 292 +strand 537 n (File: SGN-E330393+) 1 ACCCACTTTC CTTTTCCTTT TTAGGTATAT TCTCAACTCT TTTTCACCAT TAATGGCGTT 61 TTAGAGCATC ACAAACCCCA AAAAAGTAGT GGAATTTGTT GTTGTCATAA AGGAGAATAC 121 TACTTATAGC TTTTTAGAAG TAATGGGTAG TGAAAATCAA CAGCAATTTG AAGAGAATCT 181 TCTTCATAAT CATAATCATC AAGAGCAGCA GCAGCAGCAG AGGAAGAACC GTTCTTTAAG 241 GAGTAAAGCT GCGCACTTTG TATCGGATGT TGCTACTGTT ATTCTTAACC CCATATCTGA 301 TAAACCCTTA AAGCCCAGAC CACCACCTTT GCCTGAAGAT GGATCTGATT CTGACGGAAG 361 TAAGCATGAG TCAAATGCAG AGGGAGATGC CACTGATTTA GTTGACGGTC CTGATACATC 421 TTCTTTCTCA GCGTTCCTAT ATTCACTGTT GTCGACCACA GGATCCGAGA GTAAGCCTAA 481 CACTATTGGA AAATATGATA AGCAAGATGA TCGTGATGAG TCAATACCTG AACTTAC Predicted gene structure (within gDNA segment 52647 to 50324): Exon 1 52047 51714 ( 334 n); cDNA 1 334 ( 334 n); score: 0.997 Intron 1 51713 51137 ( 577 n); Pd: 0.957 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 51136 50934 ( 203 n); cDNA 335 537 ( 203 n); score: 1.000 MATCH C04HBa0077O05.1- SGN-E330393+ 0.998 537 1.000 C PGS_C04HBa0077O05.1-_SGN-E330393+ (52047 51714,51136 50934) Alignment (genomic DNA sequence = upper lines): ACCCACTTTC CTTTTCCTTT TTAGGTATAT TCTCAACTCT TTTTCACCAT TAATGGCGTT 51988 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCACTTTC CTTTTCCTTT TTAGGTATAT TCTCAACTCT TTTTCACCAT TAATGGCGTT 60 TTAGAGCATC ACAAACCCCA AAAAAGTAGT GGAATTTGTT GTTGTCATAA AGGAGAATAC 51928 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGCATC ACAAACCCCA AAAAAGTAGT GGAATTTGTT GTTGTCATAA AGGAGAATAC 120 TACTTATAGC TTTTTAGAAG TAATGGGTAG TGAAAATCAA CAGCAATTTG AAGAGAATCT 51868 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTATAGC TTTTTAGAAG TAATGGGTAG TGAAAATCAA CAGCAATTTG AAGAGAATCT 180 TCTTCATAAT CATAATCATC AGGAGCAGCA GCAGCAGCAG AGGAAGAACC GTTCTTTAAG 51808 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TCTTCATAAT CATAATCATC AAGAGCAGCA GCAGCAGCAG AGGAAGAACC GTTCTTTAAG 240 GAGTAAAGCT GCGCACTTTG TATCGGATGT TGCTACTGTT ATTCTTAACC CCATATCTGA 51748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTAAAGCT GCGCACTTTG TATCGGATGT TGCTACTGTT ATTCTTAACC CCATATCTGA 300 TAAACCCTTA AAGCCCAGAC CACCACCTTT GCCTGTAAGT TTTGGGGGTT CTTGATAATT 51688 |||||||||| |||||||||| |||||||||| |||| TAAACCCTTA AAGCCCAGAC CACCACCTTT GCCT...... .......... .......... 334 GAAATGATAT ATGTATATGT TTTGTATTCT AAATGAAATT TTGATCTTGT TGGGGTTTGT 51628 .......... .......... .......... .......... .......... .......... 334 AGTATGATCT TTTGATGATA ATTTCAGCTC TTGAACACCC AATTTGGAAT TGATCAGAAA 51568 .......... .......... .......... .......... .......... .......... 334 TGAGGGTTTA GGTTGACTAT TATAGTGTAG CCTATGAGCA TATAATCTGT GATCTTTAGC 51508 .......... .......... .......... .......... .......... .......... 334 TGAACTTGGT AAGTTGTCAA TTTTTGTCTA ACCTAGTTTC TAGCTAGGCC TCCCAACTTT 51448 .......... .......... .......... .......... .......... .......... 334 GTATGTTTTT GTTGATTTTC GAGGGAGTCA AGTCATGTCA AATCCTAGCT TGCTTGTCTC 51388 .......... .......... .......... .......... .......... .......... 334 CCTTGATTTT TCCACAATAA GGTAATTGTT GGGTCGTCTA GTCTTGGAGG AAGAACAAGA 51328 .......... .......... .......... .......... .......... .......... 334 TATGAATAGG ATTGCAGCAT CATAATCACT TCTTAGTATT CACTGCCCTT TTTACTGAAG 51268 .......... .......... .......... .......... .......... .......... 334 ATGCAGTGTG GATAACATCC TTTAATATTG GGGCATTTGA TATACATTAT ACTCTGAAAG 51208 .......... .......... .......... .......... .......... .......... 334 CAAAGCAGAA GAGAGGTTCT GTTATATTCC CTACAGATTG TATGTTAATA GTTTTTCTTA 51148 .......... .......... .......... .......... .......... .......... 334 TATTTCTTTA GGAAGATGGA TCTGATTCTG ACGGAAGTAA GCATGAGTCA AATGCAGAGG 51088 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GAAGATGGA TCTGATTCTG ACGGAAGTAA GCATGAGTCA AATGCAGAGG 383 GAGATGCCAC TGATTTAGTT GACGGTCCTG ATACATCTTC TTTCTCAGCG TTCCTATATT 51028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATGCCAC TGATTTAGTT GACGGTCCTG ATACATCTTC TTTCTCAGCG TTCCTATATT 443 CACTGTTGTC GACCACAGGA TCCGAGAGTA AGCCTAACAC TATTGGAAAA TATGATAAGC 50968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTGTTGTC GACCACAGGA TCCGAGAGTA AGCCTAACAC TATTGGAAAA TATGATAAGC 503 AAGATGATCG TGATGAGTCA ATACCTGAAC TTAC 50934 |||||||||| |||||||||| |||||||||| |||| AAGATGATCG TGATGAGTCA ATACCTGAAC TTAC 537 hqPGS_C04HBa0077O05.1-_SGN-E330393+ (52047 51714,51136 50934) ******************************************************************************** EST sequence 47 +strand 502 n (File: SGN-E394572+) 1 TTTTTTTTTT GATTTAGATA GATGATACTT TTATTTATAC TAAAAACAGT AATTCTTCCA 61 ATTAACGGAA TTAAATTAAT GTGGCACAAT TAATAATTAA AAGTTAAACT AATGTAGCAA 121 CAAAGACTCC ATGGCCCAAT GGATAAGGCG CTGGTCTACG AAACCAGAGA TTCTGGGTTC 181 GATCCCCAGT GGAGTCGTAT TCTTTAATAC TTACTTATCC TTCTTTTGCT CATCCACAGT 241 GTAATTATCT GTTGAATTTA GCCTCTTAAC TGTGTAATAA CGAAAATCGT CATAATTAGG 301 GTTTACATAG GAGCATTTGC TATAACGATT GAGCTCTCTA CTCCTTGATA AAGCAACGAC 361 TTGGTTTCAT CTAAGGAAGT CCAGAAATTC AAGGTGCTAG ATGCATCCCG TCTTTAAGTT 421 GCCAAAGCTG ATGCTTGGAT TCGCTATCCT TCACGGGTTT GTTCAGAGAG GAGGTGCAAC 481 ATCAAAAACA CCTCCTCTGG GT Predicted gene structure (within gDNA segment 50290 to 55961): Exon 1 52162 52259 ( 98 n); cDNA 114 206 ( 93 n); score: 0.867 Intron 1 52260 52387 ( 128 n); Pd: 0.948 (s: 0.86), Pa: 0.827 (s: 0) Exon 2 52388 52398 ( 11 n); cDNA 207 217 ( 11 n); score: 0.909 Intron 2 52399 52561 ( 163 n); Pd: 0.000 (s: 0), Pa: 0.784 (s: 0) Exon 3 52562 52572 ( 11 n); cDNA 218 228 ( 11 n); score: 0.818 PPA cDNA 10 1 MATCH C04HBa0077O05.1+ SGN-E394572+ 0.867 120 0.239 C PGS_C04HBa0077O05.1+_SGN-E394572+ (52162 52259,52388 52398,52562 52572) Alignment (genomic DNA sequence = upper lines): GTTCAAACGT AAAGACTTCA TGGCCCAATG GATAAGGCGC TGGTCTACGA AACCAGAGAT 52221 || ||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| GTAGCAAC-- AAAGACTCCA TGGCCCAATG GATAAGGCGC TGGTCTACGA AACCAGAGAT 171 TCTGGGTTCG ATCCCCAGTG AAGTCGTCGT TGATGTTGGT TTTTTTTTTT TTCATTTTAA 52281 |||||||||| |||||||||| |||||| | | | || TCTGGGTTCG ATCCCCAGTG GAGTCGT-AT T-CT-TTA.. .......... .......... 206 ATGTGTGTTT ATATTTCCAT CGGTTCCTAG TACTTGCATA TTCGAATTGT ACATTGTACT 52341 .......... .......... .......... .......... .......... .......... 206 TCATTTTAAG TTATTTTTTT ATTTCTCGTT CAATGTACAA AATCAGATAC TTACATATTT 52401 |||| |||| || .......... .......... .......... .......... ......ATAC TTACTTA... 217 GAATCGCATA TTACAGGGCT CATTTGGAGT GACGTTCACA ATTAAAAAAA TTTCATGCCC 52461 .......... .......... .......... .......... .......... .......... 217 AGAACGATAT ACGTATCCAC GAAACTTGTT TGGAAAAATA GACAAATTTG TAAACAAATT 52521 .......... .......... .......... .......... .......... .......... 217 AGATGTTCTA TGGACTGACT TGGGAGTATT TCTTTTTCAG TCATTCTTAT G 52572 || ||||| | | .......... .......... .......... .......... TCCTTCTTTT G 228 hqPGS_C04HBa0077O05.1+_SGN-E394572+ (52162 52259,52388 52398,52562 52572) ******************************************************************************** EST sequence 203 -strand 549 n (File: SGN-E261115-) 1 GCGTAAATGA GATTCAGGCA TTTCGGAGAA TTGTTAAAAT TGAAGTGATT TTGCAGAAAT 61 GCTAGCTGCT GTAATTTCTT TGGTCCAACT TATATATTTA CACCGACTCA TCTTCTGGAA 121 GTTTCCGGTT GCAATAGAAT TTTAATTTGA AAATATCAGT TGTTTGATTT AGATAGATGA 181 TACTTTTATT TATACTAAAA ACAGTAATTC TTCCAATTAA CGGAATTAAA TTAATGTGGC 241 ACAATTAATA ATTAAAAGTT AAACTAATGT AGCAACAAAG ACTCCATGGC CCAATGGATA 301 AGGCGCTGGT CTACGAAACC AGAGATTCTG GGTTCGATCC CCAGTGGAGT CGTATTCTTT 361 AATACTTACT TATCCTTCTT TTGCTCATCC ACAGTGTAAT TATCTGTTGA ATTTAGCCTC 421 TTAACTGTGT AATAACGAAA ATCGTCATAA TTAGGGTTTA CATAGGAGCA TTTGCTATAA 481 CGATTGAGCT CTCTACTCCT TGATAAAGCA ACGACTTGGT TTCATCTAAG GAAGTCCAGA 541 AATTCAAGC Predicted gene structure (within gDNA segment 48730 to 54871): Exon 1 52162 52259 ( 98 n); cDNA 269 361 ( 93 n); score: 0.867 Intron 1 52260 52387 ( 128 n); Pd: 0.948 (s: 0.86), Pa: 0.827 (s: 0) Exon 2 52388 52398 ( 11 n); cDNA 362 372 ( 11 n); score: 0.909 Intron 2 52399 52561 ( 163 n); Pd: 0.000 (s: 0), Pa: 0.784 (s: 0) Exon 3 52562 52572 ( 11 n); cDNA 373 383 ( 11 n); score: 0.818 MATCH C04HBa0077O05.1+ SGN-E261115- 0.867 120 0.219 C PGS_C04HBa0077O05.1+_SGN-E261115- (52162 52259,52388 52398,52562 52572) Alignment (genomic DNA sequence = upper lines): GTTCAAACGT AAAGACTTCA TGGCCCAATG GATAAGGCGC TGGTCTACGA AACCAGAGAT 52221 || ||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| GTAGCAAC-- AAAGACTCCA TGGCCCAATG GATAAGGCGC TGGTCTACGA AACCAGAGAT 326 TCTGGGTTCG ATCCCCAGTG AAGTCGTCGT TGATGTTGGT TTTTTTTTTT TTCATTTTAA 52281 |||||||||| |||||||||| |||||| | | | || TCTGGGTTCG ATCCCCAGTG GAGTCGT-AT T-CT-TTA.. .......... .......... 361 ATGTGTGTTT ATATTTCCAT CGGTTCCTAG TACTTGCATA TTCGAATTGT ACATTGTACT 52341 .......... .......... .......... .......... .......... .......... 361 TCATTTTAAG TTATTTTTTT ATTTCTCGTT CAATGTACAA AATCAGATAC TTACATATTT 52401 |||| |||| || .......... .......... .......... .......... ......ATAC TTACTTA... 372 GAATCGCATA TTACAGGGCT CATTTGGAGT GACGTTCACA ATTAAAAAAA TTTCATGCCC 52461 .......... .......... .......... .......... .......... .......... 372 AGAACGATAT ACGTATCCAC GAAACTTGTT TGGAAAAATA GACAAATTTG TAAACAAATT 52521 .......... .......... .......... .......... .......... .......... 372 AGATGTTCTA TGGACTGACT TGGGAGTATT TCTTTTTCAG TCATTCTTAT G 52572 || ||||| | | .......... .......... .......... .......... TCCTTCTTTT G 383 hqPGS_C04HBa0077O05.1+_SGN-E261115- (52162 52259,52388 52398,52562 52572) ******************************************************************************** EST sequence 204 -strand 660 n (File: SGN-E261154-) 1 ACCTCGGCGT AGGTTCTCAT CCTGGTCAAG TGTTTCACGT TCTTCAGGCC TTCTGCTGAG 61 TATATGAGAA CTTCTATCTC CCTAAGCCGC TCCTCCGGTG GTGACCTCCG CCGGCGTAAA 121 TGAGATTCAG GCATTTCGGA GAATTGTTAA AATTGAAGTG ATTTTGCAGA AATGCTAGCT 181 GCTGTAATTT CTTTGGTCCA ACTTATATAT TTACACCGAC TCATCTTCTG GAAGTTTCCG 241 GTTGCAATAG AATTTTAATT TGAAAATATC AGTTGTTTGA TTTAGATAGA TGATACTTTT 301 ATTTATACTA AAAACAGTAA TTCTTCCAAT TAACGGAATT AAATTAATGT GGCACAATTA 361 ATAATTAAAA GTTAAACTAA TGTAGCAACA AAGACTCCAT GGCCCAATGG ATAAGGCGCT 421 GGTCTACGAA ACCAGAGATT CTGGGTTCGA TCCCCAGTGG AGTCGTATTC TTTAATACTT 481 ACTTATCCTT CTTTTGCTCA TCCACAGTGT AATTATCTGT TGAATTTAGC CTCTTAACTG 541 TGTAATAACG AAAATCGTCA TAATTAGGGT TTACATAGGA GCATTTGCTA TAACGATTGA 601 GCTCTCTACT CCTTGATAAA GCAACGACTT GGTTTCATCT AAGGAAGTCC AGAAATTCAA Predicted gene structure (within gDNA segment 47600 to 54851): Exon 1 52162 52259 ( 98 n); cDNA 382 474 ( 93 n); score: 0.867 Intron 1 52260 52387 ( 128 n); Pd: 0.948 (s: 0.86), Pa: 0.827 (s: 0) Exon 2 52388 52398 ( 11 n); cDNA 475 485 ( 11 n); score: 0.909 Intron 2 52399 52561 ( 163 n); Pd: 0.000 (s: 0), Pa: 0.784 (s: 0) Exon 3 52562 52572 ( 11 n); cDNA 486 496 ( 11 n); score: 0.818 MATCH C04HBa0077O05.1+ SGN-E261154- 0.867 120 0.182 C PGS_C04HBa0077O05.1+_SGN-E261154- (52162 52259,52388 52398,52562 52572) Alignment (genomic DNA sequence = upper lines): GTTCAAACGT AAAGACTTCA TGGCCCAATG GATAAGGCGC TGGTCTACGA AACCAGAGAT 52221 || ||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| GTAGCAAC-- AAAGACTCCA TGGCCCAATG GATAAGGCGC TGGTCTACGA AACCAGAGAT 439 TCTGGGTTCG ATCCCCAGTG AAGTCGTCGT TGATGTTGGT TTTTTTTTTT TTCATTTTAA 52281 |||||||||| |||||||||| |||||| | | | || TCTGGGTTCG ATCCCCAGTG GAGTCGT-AT T-CT-TTA.. .......... .......... 474 ATGTGTGTTT ATATTTCCAT CGGTTCCTAG TACTTGCATA TTCGAATTGT ACATTGTACT 52341 .......... .......... .......... .......... .......... .......... 474 TCATTTTAAG TTATTTTTTT ATTTCTCGTT CAATGTACAA AATCAGATAC TTACATATTT 52401 |||| |||| || .......... .......... .......... .......... ......ATAC TTACTTA... 485 GAATCGCATA TTACAGGGCT CATTTGGAGT GACGTTCACA ATTAAAAAAA TTTCATGCCC 52461 .......... .......... .......... .......... .......... .......... 485 AGAACGATAT ACGTATCCAC GAAACTTGTT TGGAAAAATA GACAAATTTG TAAACAAATT 52521 .......... .......... .......... .......... .......... .......... 485 AGATGTTCTA TGGACTGACT TGGGAGTATT TCTTTTTCAG TCATTCTTAT G 52572 || ||||| | | .......... .......... .......... .......... TCCTTCTTTT G 496 hqPGS_C04HBa0077O05.1+_SGN-E261154- (52162 52259,52388 52398,52562 52572) ******************************************************************************** EST sequence 205 -strand 273 n (File: SGN-E261226-) 1 CCAACTTATA TATTTACGCC GACTCATCTT CTGGAAGTTT CCGGTTGCAA TAGAATTTTA 61 ATTTGAAAAT ATCAGTTGTT TGATTTAGAT AGATGATACT TTTATTTATA CTAAAAACAG 121 TAATTCTTCC AATTAGCGGA ATTAAATTAA TGTGGCACAA TTAATAATTA AAAGTTAAAC 181 TAATGTAGCA ACAAAGACTC CATGGCCCAA TGGATAAGGC GCTGGTCTAC GAAACCAGAG 241 ATTCTGGGTT CGATCCCCAG TGGAGTAGTA TTC Predicted gene structure (within gDNA segment 48970 to 52951): Exon 1 52162 52248 ( 87 n); cDNA 185 269 ( 85 n); score: 0.908 MATCH C04HBa0077O05.1+ SGN-E261226- 0.908 87 0.319 C PGS_C04HBa0077O05.1+_SGN-E261226- (52162 52248) Alignment (genomic DNA sequence = upper lines): GTTCAAACGT AAAGACTTCA TGGCCCAATG GATAAGGCGC TGGTCTACGA AACCAGAGAT 52221 || ||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| GTAGCAAC-- AAAGACTCCA TGGCCCAATG GATAAGGCGC TGGTCTACGA AACCAGAGAT 242 TCTGGGTTCG ATCCCCAGTG AAGTCGT 52248 |||||||||| |||||||||| ||| || TCTGGGTTCG ATCCCCAGTG GAGTAGT 269 hqPGS_C04HBa0077O05.1+_SGN-E261226- (52162 52248) ******************************************************************************** EST sequence 295 -strand 814 n (File: SGN-E260732-) 1 AAAAGTGTCA TTAACATANT GCTGATGTTA TTATTTCCTA CTTAGACAAA CCAAGCTCTA 61 AAGGACTTGT TGTGATGTTG TAGAATTTTC ATCAGAATCA CACATGATGT TACTATTCGA 121 AAAGTTAGCT TATTGGCATA TATACTATTA TTATTTTACA AATAACTCTG GCTTTCCTTC 181 CTTGTTCTCA TTAGGAAAGT CTAGTGTTCC GCCTAGAATG GCCATCCGCA ACTTCGAGGA 241 GCATAATTTA GTGAAAAAAT AATTCTAGTA TCTCAAAAAG AAGTGTTTAT ATTATTTTCT 301 AATATTCATT ATCTAATATC TTTGTTAATG ATTCTTTATT ACATGACTAA TATTTCAGTG 361 TTGCTATAAA TAGTTAATAA CTTTCGTATA ATCATTCTTT ATGAACAACC GTTAATGAGT 421 TATTATTGCT CATTATCACA ATTTATTTAT TTTCATTAAA TCTGTTACAA TTTCATTTAA 481 TCGTATGGAT GTTTCTTTCC ATTCTATACG TTACGTAATG TCCCATTTAG TGTATCAATT 541 AATGAGCTTC TAATATATTT TCTTGATATT GTAAATGAGT GATTTCTTCA TCCATAAAAG 601 GGTATGCTTC ACCCTTGTGA AAGAAAACAA TTGAAGAGAT TAAAATAAGG CTTTCAACTT 661 TATACTTCCC AATCATACTT TGTCTTCCTT TCTTGGTTAA GTATTCTTGC ATTTCTTTCT 721 TGTTTTACTA ACACGTTATC AACACGAGTC TCTAACCAAC TGAGACCTAC TTAATTCAAA 781 ATTAATTCCT AAAAGTTAAT CAACTTACTT TTAA Predicted gene structure (within gDNA segment 42852 to 53515): Exon 1 46959 46976 ( 18 n); cDNA 513 529 ( 17 n); score: 0.722 Intron 1 46977 49372 (2396 n); Pd: 0.811 (s: 0), Pa: 0.996 (s: 0) Exon 2 49373 49384 ( 12 n); cDNA 530 541 ( 12 n); score: 0.833 Intron 2 49385 50725 (1341 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 50726 50730 ( 5 n); cDNA 542 546 ( 5 n); score: 0.800 Intron 3 50731 52387 (1657 n); Pd: 0.628 (s: 0), Pa: 0.827 (s: 0) Exon 4 52388 52418 ( 31 n); cDNA 547 577 ( 31 n); score: 0.548 Intron 4 52419 52606 ( 188 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.72) Exon 5 52607 52842 ( 236 n); cDNA 578 813 ( 236 n); score: 0.742 MATCH C04HBa0077O05.1+ SGN-E260732- 0.742 302 0.371 C PGS_C04HBa0077O05.1+_SGN-E260732- (46959 46976,49373 49384,50726 50730,52388 52418,52607 52842) Alignment (genomic DNA sequence = upper lines): ACGTATATGG TGGATTTAGT AAGTCAAGTG ACATTGCCTA CCTTGTTAAT GGTTGTTGTT 47018 ||||| ||| ||||| ACGTA-ATGT CCCATTTA.. .......... .......... .......... .......... 529 CCTGATTTTA CCAAATTTCG TCCTACTGCA TTGATATCTG CATATTTGCA ATGATCATAT 47078 .......... .......... .......... .......... .......... .......... 529 CTTATACATT TTACTCATCT CTCATGTAGC ATCATGGTTT GATCAGACAT TCACACAGTT 47138 .......... .......... .......... .......... .......... .......... 529 TAGCCCTGTT CTCACACCAA ACTGTAGACC AAATTGGATT TGTTATGTAG CATCATGGTT 47198 .......... .......... .......... .......... .......... .......... 529 GATCAACCAT TCACACAGTT TAGCCCTGTT CTCACACCAA ACTGTAGATC AAATTGGATT 47258 .......... .......... .......... .......... .......... .......... 529 AGTCATGAGA CGCGACATTT GAACCAACGC CAGGAGGTGG GTTTTATCTC TACCAAAAAT 47318 .......... .......... .......... .......... .......... .......... 529 ATGACTGTCG AAAAGAGGAA ATCAAGGCAT GAAATGGAAA GGTCATTGAG TCTTCGGAAT 47378 .......... .......... .......... .......... .......... .......... 529 GTAAATAGAC AACACCAAAC ACCTGCTCAA CAAGTCTACT GAAATCTTAA TTTCACCAAC 47438 .......... .......... .......... .......... .......... .......... 529 AACGAAAAAA AAATAATCAT TAGCAGCATC ACAGCATGTT AAGCATCAGT TTCTGGAGAA 47498 .......... .......... .......... .......... .......... .......... 529 CAGTTTAATG AATATTTTCA TTTAGCTCTC ACGTTCATTC TCATTTACCG AAGCAAAGAG 47558 .......... .......... .......... .......... .......... .......... 529 AATTTTATCA AAATGGTTCA CTGTACATGT AAAGAAACAC ACCTATACAA GTGTAAAATT 47618 .......... .......... .......... .......... .......... .......... 529 GTTGCTGAAC ATGTGAAAAC ATATGTACAA AACCTATCCT GCATTCCATG TGGTGCTGTC 47678 .......... .......... .......... .......... .......... .......... 529 CGCAACCATG GGCACCAAAC AGAAACAATC ATTTAGACTG GAAAGCAAGC ATCTTTAACA 47738 .......... .......... .......... .......... .......... .......... 529 CTGTGTTTAC CAGCGGCAAA TTCCAGGTGT CTCTGTTCGC AAAATCGAAA CCATCTCTTC 47798 .......... .......... .......... .......... .......... .......... 529 ATACTTGGAA GCATATACAA AGCCCCATAA CTGCATATGA TATGATAAAT GGATATCACA 47858 .......... .......... .......... .......... .......... .......... 529 TTAAAAATTA ATTTCTCATG TTAAATGCAT ATTGTACTCT TGAAAGGTAA ATTTCATAGA 47918 .......... .......... .......... .......... .......... .......... 529 GCTAATTTCA AACAAACTGC CCTGACAGAT ACACACATGT AACTATAACA TATAGAGATA 47978 .......... .......... .......... .......... .......... .......... 529 GTGAAGAGAC AGACAAGGCA GAACACAAAA TGTGCATGCG TGCGAACACA TACAGAGATG 48038 .......... .......... .......... .......... .......... .......... 529 CAGTTACGAG ACTACCTCAA CTTCCTTAAC TTCAAAGTCT TCAGTATGTG CCAAACAAGA 48098 .......... .......... .......... .......... .......... .......... 529 ATTTCCATAA GTTTCTGATG TTGCACTTGA ACCTGTTAGC CTGGAAAAGT GAAGTTTGTT 48158 .......... .......... .......... .......... .......... .......... 529 GAGCTAATTT ATCCGAGTCA AAGATATCTT TAACATACTC AATAGAATTT GATTTCCCCT 48218 .......... .......... .......... .......... .......... .......... 529 TGTTTTTTAA TCTATGGGCA ATAGAGGCAA TAAATTGGAA TCATAAGATC TGATTCTACA 48278 .......... .......... .......... .......... .......... .......... 529 GAAAATATAT TAAAAGGTGA TATTCATGAT GACGATGATG ATAGCTGTGA ACTTGAGATT 48338 .......... .......... .......... .......... .......... .......... 529 AAGAAGATTT TTTTAAAATC CTGTCATGGC AACCAAAAAT GGGACAGGAA AAAGGTAACT 48398 .......... .......... .......... .......... .......... .......... 529 CCCAAGGCGG TGTGTGGCAT TTGATTTTCC TCTTATTTCT CCTTTTATTG GAGGACATTA 48458 .......... .......... .......... .......... .......... .......... 529 TGATACTAGG AAGGAAGCAG TCAAAAAGCA TACACATATA AAGCAATGAC AAAAGGATCA 48518 .......... .......... .......... .......... .......... .......... 529 TAATGAAGGG GAAAGAAATC TTACAGATCC CCGTCTAAGT AGAGAGCAAA ATGGCCACCG 48578 .......... .......... .......... .......... .......... .......... 529 CCTCCCAAAG CTAAATACTC CGTGGAACAG ACAGTAAAAT AGCGATTGAC ACCTACATAG 48638 .......... .......... .......... .......... .......... .......... 529 GCGACAGCGT CAATGTCATG TCACAAGTAA TTGATTTGAG TTCCAAACAG TTCCAAGGCT 48698 .......... .......... .......... .......... .......... .......... 529 TATGGACAAA CATTATCATA AAAGGCAAAA GGAACCGAAA AATCAAAGTC AGAAGCAGAA 48758 .......... .......... .......... .......... .......... .......... 529 ACAGTCAACA ATCATGCTGG AAATGGGATA ATAGTGATTT CAGAGAGAAT AAATGACTAA 48818 .......... .......... .......... .......... .......... .......... 529 TTTCTGGAAA ACAATAAATT CTTGATCATT ATATCTTTGG TATCCACCAC GAAATCTATT 48878 .......... .......... .......... .......... .......... .......... 529 TTTCAAAGTT TGTATGGTTA TACTACTATC ACCAGCTAAA ATTTTCATCA TCGTAAGATG 48938 .......... .......... .......... .......... .......... .......... 529 ACAGTAAATC AGGTAAACAA CGTATTAAAA ATGTTTCGAA CCCAAGATTT CCCATAAGAG 48998 .......... .......... .......... .......... .......... .......... 529 GACCACTGTT TTAATTCTCT TCCTGACCAT CAATACCACA AATAGAAGAG GATATGGACA 49058 .......... .......... .......... .......... .......... .......... 529 TGCTGAACCA GACCACTCCC GTCCCCATGT ATTAAAAAAT AAATTTGTTA GCGACAGCAG 49118 .......... .......... .......... .......... .......... .......... 529 ACAAAACAAA GAACGGAAAT TTGTTCTACA AACTTTAAAT GTCTGGTTCA AGTACAAGGA 49178 .......... .......... .......... .......... .......... .......... 529 AAAGAGAGAT ACCTGTGGGA CGAAATATGA CAGGTTGGCC AGATACATTT GAGAAAACAA 49238 .......... .......... .......... .......... .......... .......... 529 ATGAATTGTT TGTACCCTGT TAAATACCAA AATCAAATCA AGATGACAAA TGGAAACTCA 49298 .......... .......... .......... .......... .......... .......... 529 AAGGCAGAGG TGACATGTTT TAAGTATTCT GCTCAGAATT ACCTGATATC TTCTCTTTGT 49358 .......... .......... .......... .......... .......... .......... 529 TGTTGGCTTT AAAGGTGCAT CAACTAGCCC ACCAAACACA GCACCATTAT GGTCCCCCAC 49418 ||| || ||| || .......... ....GTGTAT CAATTA.... .......... .......... .......... 541 AACCTATAAG ATTTGGACAA TATGAGAGAA ACAAAACTAG AGTCTTATGC CAGATCAAAT 49478 .......... .......... .......... .......... .......... .......... 541 AATCTGTAAG TCTCTAAGTC TTAATGACTG TCCACCACTC ACATTGATAG AAAATCAAAA 49538 .......... .......... .......... .......... .......... .......... 541 GACACCAGAC ACCGACACCA ATGCTTTTAA CTTCAATAAT GCATAGAGAT AGAGCACTTG 49598 .......... .......... .......... .......... .......... .......... 541 GACTCATACA AAAAGAGCAA CCAGCAAGAA ATCAAAATCG AAAGTGACAA TACTTTGACT 49658 .......... .......... .......... .......... .......... .......... 541 TTATCAATGC CTCGCATCAA ATTTCAGAGG CATTTCCATC TCAAGATCTA TCATTTACTT 49718 .......... .......... .......... .......... .......... .......... 541 TCTCAAATCA TAACGAAGCC AGGAATCTTA CGACAACAAC ATACCTAGTG TGGGGAGGGT 49778 .......... .......... .......... .......... .......... .......... 541 GGTGGGTACA TTGTATGCAG CCTTGCCCCT ACCTTGTGAA GATAGAAAGG CTGTTTCCAT 49838 .......... .......... .......... .......... .......... .......... 541 AGACACTCGG TTCAAAAAAC GCATATCAAA AACAAGGGCA GAAAGGAAAT ACCAAACCCA 49898 .......... .......... .......... .......... .......... .......... 541 GAAAACTTAG TTCCAGAAAT ATCAGAAGGA ACAAATTACT ATACAATGAG TTTATCATCC 49958 .......... .......... .......... .......... .......... .......... 541 AAGAGAAGCA TTGGTTAGAT CTGTTATGAA ACGATGACAA ATTGTCTTTT TAGTAAGAGG 50018 .......... .......... .......... .......... .......... .......... 541 TATATTATAT AGCTGACCTA TACTCGGTTT CTGAAAATAT GATTTGGACT GCAACAGCAA 50078 .......... .......... .......... .......... .......... .......... 541 CACTAATAAG TTAGGGCATC AAAAGATAGC AAAACTCTGG AGTATTTGAA CATATATTAA 50138 .......... .......... .......... .......... .......... .......... 541 AACAGCTGGA TCTTATTCCA CATACAAGAA AGCACAGGGA TTCTACTCTT TTTTAAGTTC 50198 .......... .......... .......... .......... .......... .......... 541 AACAGATACT GATAAAAGTG AAGGAGATTA TCTGGTGGTT ACTTCAGGAA GTGATATACA 50258 .......... .......... .......... .......... .......... .......... 541 CACACATACA GAAAACAAAA TAATAGTTCT TATTCATCTA GACCATAAGC AATCAAAGAA 50318 .......... .......... .......... .......... .......... .......... 541 TTGTTCAAAA TGTAAATTAA AACAGCTCTT CAATGTGGAA CTCCTGTTAC ATAATTCTTA 50378 .......... .......... .......... .......... .......... .......... 541 ATGAGCAATG CATATCTCTT TACAAGTCTT CAGTTAATTA CCAGCAGACT GATGCCAGGC 50438 .......... .......... .......... .......... .......... .......... 541 CAGAGTAGGC TTCTCCTGTA TAAAGTCGAG AGTGATATTC CATTCTTCCA TGTACTGGCA 50498 .......... .......... .......... .......... .......... .......... 541 AAATAGAATT GAGAAGTTAG AATCCACTAT AAAATTGGAA ATAGGAGAGA AAATAAGCAT 50558 .......... .......... .......... .......... .......... .......... 541 AGAGCTGCTC AGAGAGCATT CAAATTTAAT ACAACTCAGG ATCCCTGCCT GTATAACAAG 50618 .......... .......... .......... .......... .......... .......... 541 ACCCACTTCC TGTCCTGCAC AAGCACAGGC AGTGCAGCAT AAAGAGAAAT TCGTGCCTTC 50678 .......... .......... .......... .......... .......... .......... 541 TCAGTGAGGA GAACTGAAGG CTCAGAAGTT CCCGGAAGAT TGTTCAGAAG AGGTTTCTTA 50738 | | || .......... .......... .......... .......... .......ATG AG........ 546 TTCATATCTT CCAAAGGTAT TTGATTATCT CCGGAAACTT TAGAATTACT TCCATCATCA 50798 .......... .......... .......... .......... .......... .......... 546 AACACCATAT CAGAGCTGCC CTTTGCCGAA CCCTGATTCC TAAAGCCGCC TAGTCTAGCA 50858 .......... .......... .......... .......... .......... .......... 546 ACTTGGTGAA GAGCTCTGCC GAGGGAATGT TTACCCCTGG AAAGTATACC TTTTCTTCTG 50918 .......... .......... .......... .......... .......... .......... 546 CTAGGTTCCC TCATTGTAAG TTCAGGTATT GACTCATCAC GATCATCTTG CTTATCATAT 50978 .......... .......... .......... .......... .......... .......... 546 TTTCCAATAG TGTTAGGCTT ACTCTCGGAT CCTGTGGTCG ACAACAGTGA ATATAGGAAC 51038 .......... .......... .......... .......... .......... .......... 546 GCTGAGAAAG AAGATGTATC AGGACCGTCA ACTAAATCAG TGGCATCTCC CTCTGCATTT 51098 .......... .......... .......... .......... .......... .......... 546 GACTCATGCT TACTTCCGTC AGAATCAGAT CCATCTTCCT AAAGAAATAT AAGAAAAACT 51158 .......... .......... .......... .......... .......... .......... 546 ATTAACATAC AATCTGTAGG GAATATAACA GAACCTCTCT TCTGCTTTGC TTTCAGAGTA 51218 .......... .......... .......... .......... .......... .......... 546 TAATGTATAT CAAATGCCCC AATATTAAAG GATGTTATCC ACACTGCATC TTCAGTAAAA 51278 .......... .......... .......... .......... .......... .......... 546 AGGGCAGTGA ATACTAAGAA GTGATTATGA TGCTGCAATC CTATTCATAT CTTGTTCTTC 51338 .......... .......... .......... .......... .......... .......... 546 CTCCAAGACT AGACGACCCA ACAATTACCT TATTGTGGAA AAATCAAGGG AGACAAGCAA 51398 .......... .......... .......... .......... .......... .......... 546 GCTAGGATTT GACATGACTT GACTCCCTCG AAAATCAACA AAAACATACA AAGTTGGGAG 51458 .......... .......... .......... .......... .......... .......... 546 GCCTAGCTAG AAACTAGGTT AGACAAAAAT TGACAACTTA CCAAGTTCAG CTAAAGATCA 51518 .......... .......... .......... .......... .......... .......... 546 CAGATTATAT GCTCATAGGC TACACTATAA TAGTCAACCT AAACCCTCAT TTCTGATCAA 51578 .......... .......... .......... .......... .......... .......... 546 TTCCAAATTG GGTGTTCAAG AGCTGAAATT ATCATCAAAA GATCATACTA CAAACCCCAA 51638 .......... .......... .......... .......... .......... .......... 546 CAAGATCAAA ATTTCATTTA GAATACAAAA CATATACATA TATCATTTCA ATTATCAAGA 51698 .......... .......... .......... .......... .......... .......... 546 ACCCCCAAAA CTTACAGGCA AAGGTGGTGG TCTGGGCTTT AAGGGTTTAT CAGATATGGG 51758 .......... .......... .......... .......... .......... .......... 546 GTTAAGAATA ACAGTAGCAA CATCCGATAC AAAGTGCGCA GCTTTACTCC TTAAAGAACG 51818 .......... .......... .......... .......... .......... .......... 546 GTTCTTCCTC TGCTGCTGCT GCTGCTCCTG ATGATTATGA TTATGAAGAA GATTCTCTTC 51878 .......... .......... .......... .......... .......... .......... 546 AAATTGCTGT TGATTTTCAC TACCCATTAC TTCTAAAAAG CTATAAGTAG TATTCTCCTT 51938 .......... .......... .......... .......... .......... .......... 546 TATGACAACA ACAAATTCCA CTACTTTTTT GGGGTTTGTG ATGCTCTAAA ACGCCATTAA 51998 .......... .......... .......... .......... .......... .......... 546 TGGTGAAAAA GAGTTGAGAA TATACCTAAA AAGGAAAAGG AAAGTGGGTG GAATATTAGG 52058 .......... .......... .......... .......... .......... .......... 546 AGAAAGTAGA AAAGGAGTGT GTTGGAAGGG ACAGTCGTTA GACATGGATA ATCATCAAAT 52118 .......... .......... .......... .......... .......... .......... 546 TCTGCAAAAT GCAAATTAAT GTTTATTACT AAACTATAAA CAGGTTCAAA CGTAAAGACT 52178 .......... .......... .......... .......... .......... .......... 546 TCATGGCCCA ATGGATAAGG CGCTGGTCTA CGAAACCAGA GATTCTGGGT TCGATCCCCA 52238 .......... .......... .......... .......... .......... .......... 546 GTGAAGTCGT CGTTGATGTT GGTTTTTTTT TTTTTCATTT TAAATGTGTG TTTATATTTC 52298 .......... .......... .......... .......... .......... .......... 546 CATCGGTTCC TAGTACTTGC ATATTCGAAT TGTACATTGT ACTTCATTTT AAGTTATTTT 52358 .......... .......... .......... .......... .......... .......... 546 TTTATTTCTC GTTCAATGTA CAAAATCAGA TACTTACATA TTTGAATCGC ATATTACAGG 52418 | || | ||| ||| | || || | | .......... .......... .........C TTCTAATATA TTTTCTTGAT ATTGTAAATG 577 GCTCATTTGG AGTGACGTTC ACAATTAAAA AAATTTCATG CCCAGAACGA TATACGTATC 52478 .......... .......... .......... .......... .......... .......... 577 CACGAAACTT GTTTGGAAAA ATAGACAAAT TTGTAAACAA ATTAGATGTT CTATGGACTG 52538 .......... .......... .......... .......... .......... .......... 577 ACTTGGGAGT ATTTCTTTTT CAGTCATTCT TATGCCTCGG TTGTTGGGCC TATAATAAGG 52598 .......... .......... .......... .......... .......... .......... 577 GATGTAACAT GTGTTTTCTA AATCCTATAA AATGATAGTC TTTCTCCATT TTGAAACACA 52658 | ||| ||||| |||| |||| || | || | ||| || || ||||| | | ........A- GTGATTTCTT CATCC-ATAA AAGGGTA-TG CTTCACCCTT GTGAAAGAAA 626 ACAAAAG-AG ATACAAAAAT ACTCTCTACT ACTTTATACT TCTCATTCAC A-TTTATCTT 52716 |||| | || | | ||||| | | | |||||||||| || || ||| | ||| |||| ACAATTGAAG AGATTAAAAT AAGGCTTTCA ACTTTATACT TCCCAATCAT ACTTTGTCTT 686 TCATTTCTTG TTTA-GTATT ATTATATTTT GCACTCATTT TA-TAACACG TTATTCACAC 52774 | ||||||| ||| ||||| || |||| || ||| || ||||||| |||| |||| CC-TTTCTTG GTTAAGTATT CTTGCATTTC TTTCTTGTTT TACTAACACG TTATCAACAC 745 TAGTCTTTAA CCAACTGAGA CCTACTTAAT TTGAAATTAA TTCCTAAAAG TTAATCAACT 52834 ||||| ||| |||||||||| |||||||||| | ||||||| |||||||||| |||||||||| GAGTCTCTAA CCAACTGAGA CCTACTTAAT TCAAAATTAA TTCCTAAAAG TTAATCAACT 805 TTATTTTA 52842 | ||||| TACTTTTA 813 hqPGS_C04HBa0077O05.1+_SGN-E260732- (52607 52842) ******************************************************************************** EST sequence 189 +strand 752 n (File: SGN-E213530+) 1 AAGGTATGAA TTTTCTCTTT CCTGTTCCAT CTCAAAAAGA AAATCTCTTT CCTGTAGATC 61 AAAATATTTG TGTCTTTTTG TCAAAATGTT AAAAATATTT GAGTGTTAAT TCTGTTCAAT 121 TACACCCAAG GTTGTGGCCT AGTGGTCAAT CAAGTCGGTT GAGAACCATG AGGTCTCTAG 181 TTCAAATCAC CGTAGAGACG AAAGAAGAAC ACTAGGTGAT TTCTTCACAT CTGTTCTAGC 241 CTGAACATCC TTAGTGGACA GTGTAATGAG AGGTGGGCAG GTATCCCGTG GAATTAGCTG 301 AGGTTTGAAA GCGGGCCTTG ACACCAATAT ATCAAAAAAT ATAAAGGGAA ACTTACATAA 361 ATATACTATA TTAAAAAAAT ATTTACCATT TATAGCAATA ACATTTGTTT TTACTTGATC 421 ACTTTTAATA CATTATAATA AAGTTCTAAT ACATATTACG GGGAACAATT TATTATTCAC 481 ATATAAAATT GATGAATAAT ACATTTATCA CTCATTTTAA TACACTTGTA ACACAATGTG 541 TCATTTCTTA CCAAACAAGC ATAATATATT TTTAAAAAAA GTCATAATAC ATATATATTG 601 CATACATATT CACTGTAAAT GCATATTGCA GATTTAACAT AGTATTGCTA TGTATTGNTA 661 CNAAATGGTA ATAAATAAAA AGTATCGCTA AAATCAGTAA TTATTTATTA AAATGTATTC 721 ATCCAAGTAA TTTCCCCCCA CCCCCCCCCC CC Predicted gene structure (within gDNA segment 58712 to 52454): Exon 1 56986 56967 ( 20 n); cDNA 319 338 ( 20 n); score: 0.650 Intron 1 56966 54436 (2531 n); Pd: 0.054 (s: 0), Pa: 0.000 (s: 0.90) Exon 2 54435 54101 ( 335 n); cDNA 339 666 ( 328 n); score: 0.788 MATCH C04HBa0077O05.1- SGN-E213530+ 0.788 355 0.472 C PGS_C04HBa0077O05.1-_SGN-E213530+ (56986 56967,54435 54101) Alignment (genomic DNA sequence = upper lines): TGAAACAAAA CTACCACCAA GCTATCCCCT TGGAAACGAG ACAACATTCA ACTATTTACT 56927 ||| || || || || || TGACACCAAT ATATCAAAAA .......... .......... .......... .......... 338 AACCTTCTAC CCTAATCCGT GACCTCCATA ACCTTCAATC TAGAATCATA TCATCGGAAA 56867 .......... .......... .......... .......... .......... .......... 338 GCTGAAGTTG CGTCATGTTT TGTCTAATCA CCCCTCCCAA CACTTTTTTG GTTTCCCTCT 56807 .......... .......... .......... .......... .......... .......... 338 ACGTCTCCTA AAACTCACTA CGGCCAACCT CTAACATTTC TCCCTAGATC GCTGTGCACC 56747 .......... .......... .......... .......... .......... .......... 338 TCCTCTTCAC ATATCATGTC TAAACCATCT CAGTCTCACT TCCCTCATCT TGTCCATCAC 56687 .......... .......... .......... .......... .......... .......... 338 GGAAGCCACT CCCACGTTAT GTTGGATATC TTCATTCTTA ATCTTTATCT CTCCTACATA 56627 .......... .......... .......... .......... .......... .......... 338 TCCACATCCA CCTCAGCGTC CTCATTTTCG CCACCTCATA TCTTTTGACA TTAGAATTCT 56567 .......... .......... .......... .......... .......... .......... 338 TAACTAACCA ACACTCCACT CGCCCCATAC ATCATAATCA GCCTAACCAC CACGGAGAAT 56507 .......... .......... .......... .......... .......... .......... 338 TGGAGTTAAT CATTTTTGTC AACAAATTAA TAATCTAGAC CAATCATACG TTTGGGAAAT 56447 .......... .......... .......... .......... .......... .......... 338 GACTACACAG AATCATAAAG AAAAATGTCT TCTACATATG CCTACAGTCA AAGATCACTA 56387 .......... .......... .......... .......... .......... .......... 338 ATTTCCTCCA ACAATGAATT AAATAAAAAA TCACACAGCA TTTTACCTAA CCGAGACAGA 56327 .......... .......... .......... .......... .......... .......... 338 TTCAAGATTT AGAGTCAGCA GATGGTCTAT GTTACATTTC GAAACAATTT TGAATAGATC 56267 .......... .......... .......... .......... .......... .......... 338 ATTCAGATCA CAAGAACCCC ATCAAGAACT AAAACTAAAC TAAACTAGGA AAAAACAGTA 56207 .......... .......... .......... .......... .......... .......... 338 AGGAAAAGTA AAAATCAACT GATCATTCAA GAAAAATAGC AAATGCAAAT ATAGAAAAGA 56147 .......... .......... .......... .......... .......... .......... 338 AATCTTGCAC TAAAATCAGG CATACAAAAT CCAACCAAAG GGGATCTGGA AGAAAAAAAA 56087 .......... .......... .......... .......... .......... .......... 338 AGTGAAACCT TTAAAAGCTT TTTTGAGTTG CTCAGCATCT TCATAAGGAT CTGGAACTGA 56027 .......... .......... .......... .......... .......... .......... 338 TGCTGGAACT TTAAGACTAG ACATTTTTTT TCCCTTTCTT GAGAATGTGC TGTGTGTTCT 55967 .......... .......... .......... .......... .......... .......... 338 TGAATTATTT ATGAGTCAAA ACTATAGTAT ATGTACAATC TCAAGAATAT ACGTGGGAAC 55907 .......... .......... .......... .......... .......... .......... 338 ATAAAAAGTG GATTCAGACA TTTTTTGCCA TCGCAAAAGT CATTGGGATA CACGATTTTA 55847 .......... .......... .......... .......... .......... .......... 338 TTATTTTTGT AACGTAACAT AACTTTTATG ACTACACCAT TGTAACGCCA CATGTACCCA 55787 .......... .......... .......... .......... .......... .......... 338 AATTTTGGCT TGTAATGGCG GAGAGTATTA GGACTTGGGA GGATTAGGTA ACCTGTAACC 55727 .......... .......... .......... .......... .......... .......... 338 TCACCAACTG TACTATATTA TCATGTGCCG TTTTTACTTG TTCATTATAT TTTTTAAAAA 55667 .......... .......... .......... .......... .......... .......... 338 ATAATTTTTT AATAATATTT TTTAAGTTTA AAGAAATAAA AAATAAATTA CTATTTTAGA 55607 .......... .......... .......... .......... .......... .......... 338 ATAATTTTAT CATTATTATT AAATACTATT CAATATTTAA TATATTTTCA AAATATTAAA 55547 .......... .......... .......... .......... .......... .......... 338 TTTAAATATT CAAATGACCG ATTACAGTAA AACTTCATTA AATTAATATA ATTGGGACCA 55487 .......... .......... .......... .......... .......... .......... 338 TGAAGTAATA TTATTATAGA GAAGTATATT TAATCGATAA ATTAATATTT ATTAATTAAA 55427 .......... .......... .......... .......... .......... .......... 338 AAATGTTTTA AGGTTCATGT TCATGAGGTT TTGAGTTTAG AGGAAATTGT GGATATCAAT 55367 .......... .......... .......... .......... .......... .......... 338 TGAAAAATCA TTGTTGACAA TGAAACAATA CTTTTGAAAC CAGTTATGCG TAAGATTATA 55307 .......... .......... .......... .......... .......... .......... 338 CTTATCAAAT CTTGAACTAT TAGCAATTTT ATGGTGTAGT TTGAAATGAC AATATAAACT 55247 .......... .......... .......... .......... .......... .......... 338 TTATGATGCA ATAAGAAAAA TTAGAAATGT GTTTCAACTA GATTTAAATT TTAACATAAA 55187 .......... .......... .......... .......... .......... .......... 338 ATAAATAAAA ATGTTAGAAT CATATTTCAC TAAATTGTCA TAGATATATT TTTGTAATTT 55127 .......... .......... .......... .......... .......... .......... 338 TAAAGAATTA TTAATTGATA ATATTATGGA GTCATATATT TAATAAGGAT CTTTTGAAAA 55067 .......... .......... .......... .......... .......... .......... 338 TATATTATTT TATTAAGACG AATAGCTTTT TTCATTAGTC CACATTAAAA TCGAAAAAAG 55007 .......... .......... .......... .......... .......... .......... 338 ATATTATTTA AAGAGGTTAT TAATTTTTCA AGTAATAATT TAACCAGGTT TTTTCTATTT 54947 .......... .......... .......... .......... .......... .......... 338 ATTTTCTCTT AATGTGTTTG TGTCACGTCT ATAAATAATA ACTATTTGAT GGATAAAGGG 54887 .......... .......... .......... .......... .......... .......... 338 TGTAAATAAT ATTTTCCTAA TCTTTCTTCC AGAAACATAA ATAAGGTGCG TGTGTATATA 54827 .......... .......... .......... .......... .......... .......... 338 TATATATATA TATATATATA TATATATATA TATATATCTT ATTTATGTTT GGTAAAGTTT 54767 .......... .......... .......... .......... .......... .......... 338 CATTTATTAA TTTTGTTTAT TAAATATTTT GCAGAATTAG AAGAAGAAGA AAAAGTAACA 54707 .......... .......... .......... .......... .......... .......... 338 ATAATACTTT TTTTGTAAGA TTACAAAAAA AAAAAAAAGT TCAAGATTAC ATTCCTTCAA 54647 .......... .......... .......... .......... .......... .......... 338 AAAAAAATTA TAATATTTTG AAAAATTGAA TATGAACATA TTAATTTAAT AAAAATAAAA 54587 .......... .......... .......... .......... .......... .......... 338 ATTTAATTTG TTTTTTTTAT ATAATAGATG TTTAAATTAG TTTCTCTCTA TAAAATAATT 54527 .......... .......... .......... .......... .......... .......... 338 TTAATATAAA AGTAAATTAA TATTTGCCCT TAATCGTAAT TAGATTCTTA AAAATATATT 54467 .......... .......... .......... .......... .......... .......... 338 TTTTAAAAGA TTAATCAAAC ACAATATATT TATTTAAAGG AAAACATACA TAAATATATT 54407 || |||||| |||| |||| |||||||| | .......... .......... .......... .ATATAAAGG GAAACTTACA TAAATATACT 367 ATAATAAAAA AATATTTACC ATTTATAGCA ATAACATTT- TTTTCACTTT TGATCACTTT 54348 ||| |||||| |||||||||| |||||||||| ||||||||| |||| || | |||||||||| ATATTAAAAA AATATTTACC ATTTATAGCA ATAACATTTG TTTTTAC--T TGATCACTTT 425 TAATTCATTT ATAATACAAG TT-TAATACA TATTACAAAC AACAATTTAT TATTCACATA 54289 |||| || || |||||| ||| || ||||||| |||||| |||||||||| |||||||||| TAATACA-TT ATAATA-AAG TTCTAATACA TATTACGGGG AACAATTTAT TATTCACATA 483 TACAAGTTTT AATGATAGAT AATACATTTA TCACACATTT TAATTCACTT ATAATATAAT 54229 || || || ||| | || |||||||||| |||| ||||| |||| ||||| ||| | ||| TA-AA--ATT GATG--A-AT AATACATTTA TCACTCATTT TAATACACTT GTAACACAAT 537 GTGGCAAATT CTACCAAA-A AAATTTATAT ATTTCAAAAA ATAATTATAA TTCATATATA 54170 ||| || | ||||||| | | | |||| |||| |||| | | | |||| | |||||||| GTGTCATTTC TTACCAAACA AGCATAATAT ATTTTTAAAA AAAGTCATAA TACATATATA 597 TGATATATAT AATTCATTTT TAATTCATAT TACAGAGTTA ACATAGTATT ATTAT-AAAT 54111 | ||| || ||||| | | ||| ||||| | |||| ||| |||||||||| ||| | | TTGCATACAT -ATTCACTGT AAATGCATAT TGCAGATTTA ACATAGTATT GCTATGTATT 656 GGTAATAAAT 54101 | || |||| GNTACNAAAT 666 hqPGS_C04HBa0077O05.1-_SGN-E213530+ (54435 54101) ******************************************************************************** EST sequence 99 +strand 787 n (File: SGN-E543099+) 1 CATAAAAGTT ATGTTACGTT ACAAAAATAA TAAAATCGTG TATCCCAATG ACTTTTGCGA 61 TGGCAAAAAA TGTCTGAATC CACTTTTTAT GTTCCCACGT ATATTCTTGA GATTGTACAT 121 ATACTATAGT TTTGACTCAT AAATAATTCA AGAACACACA GCACATTCTC AAGAAAGGGA 181 AAAAAAATGT CTAGTCTTAA AGTTCCAGCA TCAGTTCCAG ATCCTTATGA AGATGCTGAG 241 CAACTCAAAA AAGCTTTTAA AGGATGGGGC ACAAATGAGG AACTTATTAT TCAGATTCTG 301 GCTCATAGGA ATGCAGCACA ACGCAAGTTA ATCCGAGATT CTTATGCTGC TGCTTATGGA 361 GAGGATCTTC TCAAGGACTT GGATTCTGAA CTGACAAGTG ATTTTCAGCG TGTGGTGCTT 421 CTCTGGACTT TGAGTCCTGC TGAGCGCGAC GCCTACTTGG TTAATGAGGC TACCAAACGT 481 CTGACTGCTA GCAATTGGGT TATCATGGAA ATTGCTTGTA CCAGGTCTTC TGATGATCTT 541 TTTAAGGCGA GGCAGGCCTA CCATGCTCGA TACAAGAAAT CACTTGAAGA AGATGTTGCT 601 TATCATACAA GTGGGGATTT CCGTAAGCTT TTGGTTCCTC TTATAACTGC ATTCAGATAT 661 GAAGGAGATG AGGTGAACAT GACATTAGCA AGAAAGGAAG CAAATATACT GCATGAGAAG 721 ATCTCTGACN AGGCTTACAA TGACGAGGAG ATCATCCGAA TCATTTCTAC TAGGAGTAAA 781 GCACAGC Predicted gene structure (within gDNA segment 55217 to 59450): Exon 1 55817 56078 ( 262 n); cDNA 1 262 ( 262 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 263 408 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 409 627 ( 219 n); score: 1.000 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 1.00) Exon 4 58681 58840 ( 160 n); cDNA 628 787 ( 160 n); score: 0.994 MATCH C04HBa0077O05.1+ SGN-E543099+ 0.999 787 1.000 C PGS_C04HBa0077O05.1+_SGN-E543099+ (55817 56078,57338 57483,57693 57911,58681 58840) Alignment (genomic DNA sequence = upper lines): CATAAAAGTT ATGTTACGTT ACAAAAATAA TAAAATCGTG TATCCCAATG ACTTTTGCGA 55876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAAAAGTT ATGTTACGTT ACAAAAATAA TAAAATCGTG TATCCCAATG ACTTTTGCGA 60 TGGCAAAAAA TGTCTGAATC CACTTTTTAT GTTCCCACGT ATATTCTTGA GATTGTACAT 55936 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCAAAAAA TGTCTGAATC CACTTTTTAT GTTCCCACGT ATATTCTTGA GATTGTACAT 120 ATACTATAGT TTTGACTCAT AAATAATTCA AGAACACACA GCACATTCTC AAGAAAGGGA 55996 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACTATAGT TTTGACTCAT AAATAATTCA AGAACACACA GCACATTCTC AAGAAAGGGA 180 AAAAAAATGT CTAGTCTTAA AGTTCCAGCA TCAGTTCCAG ATCCTTATGA AGATGCTGAG 56056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAATGT CTAGTCTTAA AGTTCCAGCA TCAGTTCCAG ATCCTTATGA AGATGCTGAG 240 CAACTCAAAA AAGCTTTTAA AGGTTTCACT TTTTTTTTCT TCCAGATCCC CTTTGGTTGG 56116 |||||||||| |||||||||| || CAACTCAAAA AAGCTTTTAA AG........ .......... .......... .......... 262 ATTTTGTATG CCTGATTTTA GTGCAAGATT TCTTTTCTAT ATTTGCATTT GCTATTTTTC 56176 .......... .......... .......... .......... .......... .......... 262 TTGAATGATC AGTTGATTTT TACTTTTCCT TACTGTTTTT TCCTAGTTTA GTTTAGTTTT 56236 .......... .......... .......... .......... .......... .......... 262 AGTTCTTGAT GGGGTTCTTG TGATCTGAAT GATCTATTCA AAATTGTTTC GAAATGTAAC 56296 .......... .......... .......... .......... .......... .......... 262 ATAGACCATC TGCTGACTCT AAATCTTGAA TCTGTCTCGG TTAGGTAAAA TGCTGTGTGA 56356 .......... .......... .......... .......... .......... .......... 262 TTTTTTATTT AATTCATTGT TGGAGGAAAT TAGTGATCTT TGACTGTAGG CATATGTAGA 56416 .......... .......... .......... .......... .......... .......... 262 AGACATTTTT CTTTATGATT CTGTGTAGTC ATTTCCCAAA CGTATGATTG GTCTAGATTA 56476 .......... .......... .......... .......... .......... .......... 262 TTAATTTGTT GACAAAAATG ATTAACTCCA ATTCTCCGTG GTGGTTAGGC TGATTATGAT 56536 .......... .......... .......... .......... .......... .......... 262 GTATGGGGCG AGTGGAGTGT TGGTTAGTTA AGAATTCTAA TGTCAAAAGA TATGAGGTGG 56596 .......... .......... .......... .......... .......... .......... 262 CGAAAATGAG GACGCTGAGG TGGATGTGGA TATGTAGGAG AGATAAAGAT TAAGAATGAA 56656 .......... .......... .......... .......... .......... .......... 262 GATATCCAAC ATAACGTGGG AGTGGCTTCC GTGATGGACA AGATGAGGGA AGTGAGACTG 56716 .......... .......... .......... .......... .......... .......... 262 AGATGGTTTA GACATGATAT GTGAAGAGGA GGTGCACAGC GATCTAGGGA GAAATGTTAG 56776 .......... .......... .......... .......... .......... .......... 262 AGGTTGGCCG TAGTGAGTTT TAGGAGACGT AGAGGGAAAC CAAAAAAGTG TTGGGAGGGG 56836 .......... .......... .......... .......... .......... .......... 262 TGATTAGACA AAACATGACG CAACTTCAGC TTTCCGATGA TATGATTCTA GATTGAAGGT 56896 .......... .......... .......... .......... .......... .......... 262 TATGGAGGTC ACGGATTAGG GTAGAAGGTT AGTAAATAGT TGAATGTTGT CTCGTTTCCA 56956 .......... .......... .......... .......... .......... .......... 262 AGGGGATAGC TTGGTGGTAG TTTTGTTTCA TTGTACCTAT TTCCCCAGTA ATACAAGTAG 57016 .......... .......... .......... .......... .......... .......... 262 TAGTAGCATT TTCTCATAGT TGTCTGTCTT GCAATTTTTG TTGCTCGTTA TTTACTGTGC 57076 .......... .......... .......... .......... .......... .......... 262 TTCTGTTATC ACATTAGTTG GTTATTGTTA TTGCTCTTGT TTTTTGAATG CTCTAGGTTA 57136 .......... .......... .......... .......... .......... .......... 262 TGCTTTCCCT TTAATTTTCA ATGTCCTGTT ACTCTGTTGT GTGTTTTGGG AACAGCCTAT 57196 .......... .......... .......... .......... .......... .......... 262 CTACCTCCAC GAGGTAGGGT TTAGGTTCCT CCCCAGACCC CGACTATGGG ACTACATCGA 57256 .......... .......... .......... .......... .......... .......... 262 GTTTGCTGTT GTTGTTTGGG CTTGCAAAGC AGGAAGCTGA ATTTTGTTTT CCACAGAAGA 57316 .......... .......... .......... .......... .......... .......... 262 CTCATGGTTA AACGTTTGCA GGATGGGGCA CAAATGAGGA ACTTATTATT CAGATTCTGG 57376 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GATGGGGCA CAAATGAGGA ACTTATTATT CAGATTCTGG 301 CTCATAGGAA TGCAGCACAA CGCAAGTTAA TCCGAGATTC TTATGCTGCT GCTTATGGAG 57436 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCATAGGAA TGCAGCACAA CGCAAGTTAA TCCGAGATTC TTATGCTGCT GCTTATGGAG 361 AGGATCTTCT CAAGGACTTG GATTCTGAAC TGACAAGTGA TTTTCAGGTT AATTAATCTC 57496 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AGGATCTTCT CAAGGACTTG GATTCTGAAC TGACAAGTGA TTTTCAG... .......... 408 AATTTTCCAT TCTTGTTCCA AATTGTGTTG GAGTACACCC CGTTTAATCA ATCATTGTGG 57556 .......... .......... .......... .......... .......... .......... 408 TGTATTGAAT GTTTTTCTTT TTGTTCATTT ATACTTTCTT AGATTTGTCT AGTCCATATC 57616 .......... .......... .......... .......... .......... .......... 408 TACATTATTA ATCACAGGTA ACATTAGCCA AGGATTGCTT TGACTAATAT ATAATTTGAT 57676 .......... .......... .......... .......... .......... .......... 408 TCACATGATA TTGCAGCGTG TGGTGCTTCT CTGGACTTTG AGTCCTGCTG AGCGCGACGC 57736 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......CGTG TGGTGCTTCT CTGGACTTTG AGTCCTGCTG AGCGCGACGC 452 CTACTTGGTT AATGAGGCTA CCAAACGTCT GACTGCTAGC AATTGGGTTA TCATGGAAAT 57796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTTGGTT AATGAGGCTA CCAAACGTCT GACTGCTAGC AATTGGGTTA TCATGGAAAT 512 TGCTTGTACC AGGTCTTCTG ATGATCTTTT TAAGGCGAGG CAGGCCTACC ATGCTCGATA 57856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTGTACC AGGTCTTCTG ATGATCTTTT TAAGGCGAGG CAGGCCTACC ATGCTCGATA 572 CAAGAAATCA CTTGAAGAAG ATGTTGCTTA TCATACAAGT GGGGATTTCC GTAAGGTACT 57916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| CAAGAAATCA CTTGAAGAAG ATGTTGCTTA TCATACAAGT GGGGATTTCC GTAAG..... 627 TCGCATATAA GATCTACTGT GCCACATTTA ATTCATTGTT ATTCTAGTGC CAGTCAACTT 57976 .......... .......... .......... .......... .......... .......... 627 TGTCATTAGA TCAGCTGTAG AGAAAAACCT ATAGTCAGCC GAAGTTTGCT AAAGAATCTG 58036 .......... .......... .......... .......... .......... .......... 627 CCACTTTGTT GTTTTCTATA AATCTATAGA CGATTCTGAA ATTACTAGCC GAGAATTTGG 58096 .......... .......... .......... .......... .......... .......... 627 ATGAAATGAA GCTCCACCAT GAGTCTAGGT ATCGGCAATT CTTGGGGCTT TTTTATTTTC 58156 .......... .......... .......... .......... .......... .......... 627 ATTGAAGCGA TTATTTGACT GTTTAGTGAT TCGAGAACCA GAAGATCATT TTGCCTAGTA 58216 .......... .......... .......... .......... .......... .......... 627 AAGCTCATCA ACTCTTCTTT TTGCTCGTTG TGACTTCTTA AGGATGATTC TTTCTACCAT 58276 .......... .......... .......... .......... .......... .......... 627 GTAAGCTGTT GCACTTGCGC CTATTTGCCA CCTTTGGGGT GTTTAAGATG AATGATAAAC 58336 .......... .......... .......... .......... .......... .......... 627 GGTGACAAGT GATGGATAGT CTCCGGTTAC GACCATCCAC CTCCAGCCAT AACGTTGGGG 58396 .......... .......... .......... .......... .......... .......... 627 GTTAACCTCA CCAAGGGAGC GAAGTGGAGA AGGATCACCG TTGTTGTGCT CTTGAGCCAG 58456 .......... .......... .......... .......... .......... .......... 627 GGGAAACTGA GGTTACGGTT TACTGTGTCC AAAAAATAAA ATAAAAGGTT TAAGGATGAT 58516 .......... .......... .......... .......... .......... .......... 627 AGTGTCTGAG ATAACAGTGT AAATAGTTAG ATAAGCACCT TAAAGTTAGA TTTTTGTGTT 58576 .......... .......... .......... .......... .......... .......... 627 GTCTGTCTTT GTCTCCAGTG AATACTGAGA ATACATGCAA CAAATAAATC TTGCAATCAC 58636 .......... .......... .......... .......... .......... .......... 627 CGTCGTTAAG CTGGTCATAT TGTATTAAAC TAATTCCCGA ACAGCTTTTG GTTCCTCTTA 58696 |||||| |||||||||| .......... .......... .......... .......... ....CTTTTG GTTCCTCTTA 643 TAACTGCATT CAGATATGAA GGAGATGAGG TGAACATGAC ATTAGCAAGA AAGGAAGCAA 58756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACTGCATT CAGATATGAA GGAGATGAGG TGAACATGAC ATTAGCAAGA AAGGAAGCAA 703 ATATACTGCA TGAGAAGATC TCTGACAAGG CTTACAATGA CGAGGAGATC ATCCGAATCA 58816 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| ATATACTGCA TGAGAAGATC TCTGACNAGG CTTACAATGA CGAGGAGATC ATCCGAATCA 763 TTTCTACTAG GAGTAAAGCA CAGC 58840 |||||||||| |||||||||| |||| TTTCTACTAG GAGTAAAGCA CAGC 787 hqPGS_C04HBa0077O05.1+_SGN-E543099+ (55817 56078,57338 57483,57693 57911,58681 58840) ******************************************************************************** EST sequence 34 +strand 652 n (File: SGN-E303315+) 1 ATAAAAGTTA TGTTACGTTA CAAAAATAAT AAAATCGTGT ATCCCAATGA CTTTTGCGAT 61 GGCAAAAAAT GTCTGAATCC ACTTTTTATG TTCCCACGTA TATTCTTGAG ATTGTACATA 121 TACTATAGTT TTGACTCATA AATAATTCAA GAACACACAG CACATTCTCA AGAAAGGGAA 181 AAAAAATGTC TAGTCTTAAA GTTCCAGCAT CAGTTCCAGA TCCTTATGAA GATGCTGAGC 241 AACTCAAAAA AGCTTTTAAA GGATGGGGCA CAAATGAGGA ACTTATTATT CAGATTCTGG 301 CTCATAGGAA TGCAGCACAA CGCAAGTTAA TCCGAGATTC TTATGCTGCT GCTTATGGAG 361 AGGATCTTCT CAAGGACTTG GATTCTGAAC TGACAAGTGA TTTTCAGCGT GTGGTGCTTC 421 TCTGGACTTT GAGTCCTGCT GAGCGCGACG CCTACTTGGT TAATGAGGCT ACCAAACGTC 481 TGACTGCTAG CAATTGGGTT ATCATGGAAA TTGCTTGTAC CAGGTCTTCT GATGATCTTT 541 TTAAGGCGAG GCAGGCCTAC CATGCTCGAT ACAAGAAATC ACTTGAAGAA GATGTTGCTT 601 ATCATACAAG TGGGGATTTC CGTAAGCTTT TGGTTCCTCT TATAACTGCA TT Predicted gene structure (within gDNA segment 55218 to 58781): Exon 1 55818 56078 ( 261 n); cDNA 1 261 ( 261 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 262 407 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 408 626 ( 219 n); score: 1.000 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 0) Exon 4 58681 58706 ( 26 n); cDNA 627 652 ( 26 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E303315+ 1.000 652 1.000 C PGS_C04HBa0077O05.1+_SGN-E303315+ (55818 56078,57338 57483,57693 57911,58681 58706) Alignment (genomic DNA sequence = upper lines): ATAAAAGTTA TGTTACGTTA CAAAAATAAT AAAATCGTGT ATCCCAATGA CTTTTGCGAT 55877 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAAAGTTA TGTTACGTTA CAAAAATAAT AAAATCGTGT ATCCCAATGA CTTTTGCGAT 60 GGCAAAAAAT GTCTGAATCC ACTTTTTATG TTCCCACGTA TATTCTTGAG ATTGTACATA 55937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAAAAAAT GTCTGAATCC ACTTTTTATG TTCCCACGTA TATTCTTGAG ATTGTACATA 120 TACTATAGTT TTGACTCATA AATAATTCAA GAACACACAG CACATTCTCA AGAAAGGGAA 55997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTATAGTT TTGACTCATA AATAATTCAA GAACACACAG CACATTCTCA AGAAAGGGAA 180 AAAAAATGTC TAGTCTTAAA GTTCCAGCAT CAGTTCCAGA TCCTTATGAA GATGCTGAGC 56057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAATGTC TAGTCTTAAA GTTCCAGCAT CAGTTCCAGA TCCTTATGAA GATGCTGAGC 240 AACTCAAAAA AGCTTTTAAA GGTTTCACTT TTTTTTTCTT CCAGATCCCC TTTGGTTGGA 56117 |||||||||| |||||||||| | AACTCAAAAA AGCTTTTAAA G......... .......... .......... .......... 261 TTTTGTATGC CTGATTTTAG TGCAAGATTT CTTTTCTATA TTTGCATTTG CTATTTTTCT 56177 .......... .......... .......... .......... .......... .......... 261 TGAATGATCA GTTGATTTTT ACTTTTCCTT ACTGTTTTTT CCTAGTTTAG TTTAGTTTTA 56237 .......... .......... .......... .......... .......... .......... 261 GTTCTTGATG GGGTTCTTGT GATCTGAATG ATCTATTCAA AATTGTTTCG AAATGTAACA 56297 .......... .......... .......... .......... .......... .......... 261 TAGACCATCT GCTGACTCTA AATCTTGAAT CTGTCTCGGT TAGGTAAAAT GCTGTGTGAT 56357 .......... .......... .......... .......... .......... .......... 261 TTTTTATTTA ATTCATTGTT GGAGGAAATT AGTGATCTTT GACTGTAGGC ATATGTAGAA 56417 .......... .......... .......... .......... .......... .......... 261 GACATTTTTC TTTATGATTC TGTGTAGTCA TTTCCCAAAC GTATGATTGG TCTAGATTAT 56477 .......... .......... .......... .......... .......... .......... 261 TAATTTGTTG ACAAAAATGA TTAACTCCAA TTCTCCGTGG TGGTTAGGCT GATTATGATG 56537 .......... .......... .......... .......... .......... .......... 261 TATGGGGCGA GTGGAGTGTT GGTTAGTTAA GAATTCTAAT GTCAAAAGAT ATGAGGTGGC 56597 .......... .......... .......... .......... .......... .......... 261 GAAAATGAGG ACGCTGAGGT GGATGTGGAT ATGTAGGAGA GATAAAGATT AAGAATGAAG 56657 .......... .......... .......... .......... .......... .......... 261 ATATCCAACA TAACGTGGGA GTGGCTTCCG TGATGGACAA GATGAGGGAA GTGAGACTGA 56717 .......... .......... .......... .......... .......... .......... 261 GATGGTTTAG ACATGATATG TGAAGAGGAG GTGCACAGCG ATCTAGGGAG AAATGTTAGA 56777 .......... .......... .......... .......... .......... .......... 261 GGTTGGCCGT AGTGAGTTTT AGGAGACGTA GAGGGAAACC AAAAAAGTGT TGGGAGGGGT 56837 .......... .......... .......... .......... .......... .......... 261 GATTAGACAA AACATGACGC AACTTCAGCT TTCCGATGAT ATGATTCTAG ATTGAAGGTT 56897 .......... .......... .......... .......... .......... .......... 261 ATGGAGGTCA CGGATTAGGG TAGAAGGTTA GTAAATAGTT GAATGTTGTC TCGTTTCCAA 56957 .......... .......... .......... .......... .......... .......... 261 GGGGATAGCT TGGTGGTAGT TTTGTTTCAT TGTACCTATT TCCCCAGTAA TACAAGTAGT 57017 .......... .......... .......... .......... .......... .......... 261 AGTAGCATTT TCTCATAGTT GTCTGTCTTG CAATTTTTGT TGCTCGTTAT TTACTGTGCT 57077 .......... .......... .......... .......... .......... .......... 261 TCTGTTATCA CATTAGTTGG TTATTGTTAT TGCTCTTGTT TTTTGAATGC TCTAGGTTAT 57137 .......... .......... .......... .......... .......... .......... 261 GCTTTCCCTT TAATTTTCAA TGTCCTGTTA CTCTGTTGTG TGTTTTGGGA ACAGCCTATC 57197 .......... .......... .......... .......... .......... .......... 261 TACCTCCACG AGGTAGGGTT TAGGTTCCTC CCCAGACCCC GACTATGGGA CTACATCGAG 57257 .......... .......... .......... .......... .......... .......... 261 TTTGCTGTTG TTGTTTGGGC TTGCAAAGCA GGAAGCTGAA TTTTGTTTTC CACAGAAGAC 57317 .......... .......... .......... .......... .......... .......... 261 TCATGGTTAA ACGTTTGCAG GATGGGGCAC AAATGAGGAA CTTATTATTC AGATTCTGGC 57377 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GATGGGGCAC AAATGAGGAA CTTATTATTC AGATTCTGGC 301 TCATAGGAAT GCAGCACAAC GCAAGTTAAT CCGAGATTCT TATGCTGCTG CTTATGGAGA 57437 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATAGGAAT GCAGCACAAC GCAAGTTAAT CCGAGATTCT TATGCTGCTG CTTATGGAGA 361 GGATCTTCTC AAGGACTTGG ATTCTGAACT GACAAGTGAT TTTCAGGTTA ATTAATCTCA 57497 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGATCTTCTC AAGGACTTGG ATTCTGAACT GACAAGTGAT TTTCAG.... .......... 407 ATTTTCCATT CTTGTTCCAA ATTGTGTTGG AGTACACCCC GTTTAATCAA TCATTGTGGT 57557 .......... .......... .......... .......... .......... .......... 407 GTATTGAATG TTTTTCTTTT TGTTCATTTA TACTTTCTTA GATTTGTCTA GTCCATATCT 57617 .......... .......... .......... .......... .......... .......... 407 ACATTATTAA TCACAGGTAA CATTAGCCAA GGATTGCTTT GACTAATATA TAATTTGATT 57677 .......... .......... .......... .......... .......... .......... 407 CACATGATAT TGCAGCGTGT GGTGCTTCTC TGGACTTTGA GTCCTGCTGA GCGCGACGCC 57737 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....CGTGT GGTGCTTCTC TGGACTTTGA GTCCTGCTGA GCGCGACGCC 452 TACTTGGTTA ATGAGGCTAC CAAACGTCTG ACTGCTAGCA ATTGGGTTAT CATGGAAATT 57797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTGGTTA ATGAGGCTAC CAAACGTCTG ACTGCTAGCA ATTGGGTTAT CATGGAAATT 512 GCTTGTACCA GGTCTTCTGA TGATCTTTTT AAGGCGAGGC AGGCCTACCA TGCTCGATAC 57857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGTACCA GGTCTTCTGA TGATCTTTTT AAGGCGAGGC AGGCCTACCA TGCTCGATAC 572 AAGAAATCAC TTGAAGAAGA TGTTGCTTAT CATACAAGTG GGGATTTCCG TAAGGTACTT 57917 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| AAGAAATCAC TTGAAGAAGA TGTTGCTTAT CATACAAGTG GGGATTTCCG TAAG...... 626 CGCATATAAG ATCTACTGTG CCACATTTAA TTCATTGTTA TTCTAGTGCC AGTCAACTTT 57977 .......... .......... .......... .......... .......... .......... 626 GTCATTAGAT CAGCTGTAGA GAAAAACCTA TAGTCAGCCG AAGTTTGCTA AAGAATCTGC 58037 .......... .......... .......... .......... .......... .......... 626 CACTTTGTTG TTTTCTATAA ATCTATAGAC GATTCTGAAA TTACTAGCCG AGAATTTGGA 58097 .......... .......... .......... .......... .......... .......... 626 TGAAATGAAG CTCCACCATG AGTCTAGGTA TCGGCAATTC TTGGGGCTTT TTTATTTTCA 58157 .......... .......... .......... .......... .......... .......... 626 TTGAAGCGAT TATTTGACTG TTTAGTGATT CGAGAACCAG AAGATCATTT TGCCTAGTAA 58217 .......... .......... .......... .......... .......... .......... 626 AGCTCATCAA CTCTTCTTTT TGCTCGTTGT GACTTCTTAA GGATGATTCT TTCTACCATG 58277 .......... .......... .......... .......... .......... .......... 626 TAAGCTGTTG CACTTGCGCC TATTTGCCAC CTTTGGGGTG TTTAAGATGA ATGATAAACG 58337 .......... .......... .......... .......... .......... .......... 626 GTGACAAGTG ATGGATAGTC TCCGGTTACG ACCATCCACC TCCAGCCATA ACGTTGGGGG 58397 .......... .......... .......... .......... .......... .......... 626 TTAACCTCAC CAAGGGAGCG AAGTGGAGAA GGATCACCGT TGTTGTGCTC TTGAGCCAGG 58457 .......... .......... .......... .......... .......... .......... 626 GGAAACTGAG GTTACGGTTT ACTGTGTCCA AAAAATAAAA TAAAAGGTTT AAGGATGATA 58517 .......... .......... .......... .......... .......... .......... 626 GTGTCTGAGA TAACAGTGTA AATAGTTAGA TAAGCACCTT AAAGTTAGAT TTTTGTGTTG 58577 .......... .......... .......... .......... .......... .......... 626 TCTGTCTTTG TCTCCAGTGA ATACTGAGAA TACATGCAAC AAATAAATCT TGCAATCACC 58637 .......... .......... .......... .......... .......... .......... 626 GTCGTTAAGC TGGTCATATT GTATTAAACT AATTCCCGAA CAGCTTTTGG TTCCTCTTAT 58697 ||||||| |||||||||| .......... .......... .......... .......... ...CTTTTGG TTCCTCTTAT 643 AACTGCATT 58706 ||||||||| AACTGCATT 652 hqPGS_C04HBa0077O05.1+_SGN-E303315+ (55818 56078,57338 57483,57693 57911,58681 58706) ******************************************************************************** EST sequence 118 +strand 540 n (File: SGN-E245265+) 1 ATCCACTTTT TATGTTCCCA CGTATATTCT TGAGATTGTA CATATACTAT AGTTTTGACT 61 CATAAATAAT TCAAGAACAC ACAGCACATT CTCAAGAAAG GGAAAAAAAA TGTCTAGTCT 121 TAAAGTTCCA GCATCAGTTC CAGATCCTTA TGAAGATGCT GAGCAACTCA AAAAAGCTTT 181 TAAAGGATGG GGCACAAATG AGGAACTTAT TATTCAGATT CTGGCTCATA GGAATGCAGC 241 ACAACGCAAG TTAATCCGAG ATTCTTATGC TGCTGCTTAT GGAGAGGATC TTCTCAAGGA 301 CTTGGATTCT GAACTGACAA GTGATTTTCA GCGTGTGGTG CTTCTCTGGA CTTTGAGTCC 361 TGCTGAGCGC GACGCCTACT TGGTTAATGA GGCTACCAAA CGTCTGACTG CTAGCAATTG 421 GGTTATCATG GAAATTGCTT GTACCAGGTC TTCTGATGAT CTTTTTAAGG CGAGGCAGGC 481 CTACCATGCT CGATACAAGA AATCACTTGA AGAAGATGTT GCTTATCATA CAAGTGGGGA Predicted gene structure (within gDNA segment 55294 to 58511): Exon 1 55894 56078 ( 185 n); cDNA 1 185 ( 185 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 186 331 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57901 ( 209 n); cDNA 332 540 ( 209 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E245265+ 1.000 540 1.000 C PGS_C04HBa0077O05.1+_SGN-E245265+ (55894 56078,57338 57483,57693 57901) Alignment (genomic DNA sequence = upper lines): ATCCACTTTT TATGTTCCCA CGTATATTCT TGAGATTGTA CATATACTAT AGTTTTGACT 55953 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCACTTTT TATGTTCCCA CGTATATTCT TGAGATTGTA CATATACTAT AGTTTTGACT 60 CATAAATAAT TCAAGAACAC ACAGCACATT CTCAAGAAAG GGAAAAAAAA TGTCTAGTCT 56013 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAAATAAT TCAAGAACAC ACAGCACATT CTCAAGAAAG GGAAAAAAAA TGTCTAGTCT 120 TAAAGTTCCA GCATCAGTTC CAGATCCTTA TGAAGATGCT GAGCAACTCA AAAAAGCTTT 56073 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAGTTCCA GCATCAGTTC CAGATCCTTA TGAAGATGCT GAGCAACTCA AAAAAGCTTT 180 TAAAGGTTTC ACTTTTTTTT TCTTCCAGAT CCCCTTTGGT TGGATTTTGT ATGCCTGATT 56133 ||||| TAAAG..... .......... .......... .......... .......... .......... 185 TTAGTGCAAG ATTTCTTTTC TATATTTGCA TTTGCTATTT TTCTTGAATG ATCAGTTGAT 56193 .......... .......... .......... .......... .......... .......... 185 TTTTACTTTT CCTTACTGTT TTTTCCTAGT TTAGTTTAGT TTTAGTTCTT GATGGGGTTC 56253 .......... .......... .......... .......... .......... .......... 185 TTGTGATCTG AATGATCTAT TCAAAATTGT TTCGAAATGT AACATAGACC ATCTGCTGAC 56313 .......... .......... .......... .......... .......... .......... 185 TCTAAATCTT GAATCTGTCT CGGTTAGGTA AAATGCTGTG TGATTTTTTA TTTAATTCAT 56373 .......... .......... .......... .......... .......... .......... 185 TGTTGGAGGA AATTAGTGAT CTTTGACTGT AGGCATATGT AGAAGACATT TTTCTTTATG 56433 .......... .......... .......... .......... .......... .......... 185 ATTCTGTGTA GTCATTTCCC AAACGTATGA TTGGTCTAGA TTATTAATTT GTTGACAAAA 56493 .......... .......... .......... .......... .......... .......... 185 ATGATTAACT CCAATTCTCC GTGGTGGTTA GGCTGATTAT GATGTATGGG GCGAGTGGAG 56553 .......... .......... .......... .......... .......... .......... 185 TGTTGGTTAG TTAAGAATTC TAATGTCAAA AGATATGAGG TGGCGAAAAT GAGGACGCTG 56613 .......... .......... .......... .......... .......... .......... 185 AGGTGGATGT GGATATGTAG GAGAGATAAA GATTAAGAAT GAAGATATCC AACATAACGT 56673 .......... .......... .......... .......... .......... .......... 185 GGGAGTGGCT TCCGTGATGG ACAAGATGAG GGAAGTGAGA CTGAGATGGT TTAGACATGA 56733 .......... .......... .......... .......... .......... .......... 185 TATGTGAAGA GGAGGTGCAC AGCGATCTAG GGAGAAATGT TAGAGGTTGG CCGTAGTGAG 56793 .......... .......... .......... .......... .......... .......... 185 TTTTAGGAGA CGTAGAGGGA AACCAAAAAA GTGTTGGGAG GGGTGATTAG ACAAAACATG 56853 .......... .......... .......... .......... .......... .......... 185 ACGCAACTTC AGCTTTCCGA TGATATGATT CTAGATTGAA GGTTATGGAG GTCACGGATT 56913 .......... .......... .......... .......... .......... .......... 185 AGGGTAGAAG GTTAGTAAAT AGTTGAATGT TGTCTCGTTT CCAAGGGGAT AGCTTGGTGG 56973 .......... .......... .......... .......... .......... .......... 185 TAGTTTTGTT TCATTGTACC TATTTCCCCA GTAATACAAG TAGTAGTAGC ATTTTCTCAT 57033 .......... .......... .......... .......... .......... .......... 185 AGTTGTCTGT CTTGCAATTT TTGTTGCTCG TTATTTACTG TGCTTCTGTT ATCACATTAG 57093 .......... .......... .......... .......... .......... .......... 185 TTGGTTATTG TTATTGCTCT TGTTTTTTGA ATGCTCTAGG TTATGCTTTC CCTTTAATTT 57153 .......... .......... .......... .......... .......... .......... 185 TCAATGTCCT GTTACTCTGT TGTGTGTTTT GGGAACAGCC TATCTACCTC CACGAGGTAG 57213 .......... .......... .......... .......... .......... .......... 185 GGTTTAGGTT CCTCCCCAGA CCCCGACTAT GGGACTACAT CGAGTTTGCT GTTGTTGTTT 57273 .......... .......... .......... .......... .......... .......... 185 GGGCTTGCAA AGCAGGAAGC TGAATTTTGT TTTCCACAGA AGACTCATGG TTAAACGTTT 57333 .......... .......... .......... .......... .......... .......... 185 GCAGGATGGG GCACAAATGA GGAACTTATT ATTCAGATTC TGGCTCATAG GAATGCAGCA 57393 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GATGGG GCACAAATGA GGAACTTATT ATTCAGATTC TGGCTCATAG GAATGCAGCA 241 CAACGCAAGT TAATCCGAGA TTCTTATGCT GCTGCTTATG GAGAGGATCT TCTCAAGGAC 57453 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGCAAGT TAATCCGAGA TTCTTATGCT GCTGCTTATG GAGAGGATCT TCTCAAGGAC 301 TTGGATTCTG AACTGACAAG TGATTTTCAG GTTAATTAAT CTCAATTTTC CATTCTTGTT 57513 |||||||||| |||||||||| |||||||||| TTGGATTCTG AACTGACAAG TGATTTTCAG .......... .......... .......... 331 CCAAATTGTG TTGGAGTACA CCCCGTTTAA TCAATCATTG TGGTGTATTG AATGTTTTTC 57573 .......... .......... .......... .......... .......... .......... 331 TTTTTGTTCA TTTATACTTT CTTAGATTTG TCTAGTCCAT ATCTACATTA TTAATCACAG 57633 .......... .......... .......... .......... .......... .......... 331 GTAACATTAG CCAAGGATTG CTTTGACTAA TATATAATTT GATTCACATG ATATTGCAGC 57693 | .......... .......... .......... .......... .......... .........C 332 GTGTGGTGCT TCTCTGGACT TTGAGTCCTG CTGAGCGCGA CGCCTACTTG GTTAATGAGG 57753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTGGTGCT TCTCTGGACT TTGAGTCCTG CTGAGCGCGA CGCCTACTTG GTTAATGAGG 392 CTACCAAACG TCTGACTGCT AGCAATTGGG TTATCATGGA AATTGCTTGT ACCAGGTCTT 57813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACCAAACG TCTGACTGCT AGCAATTGGG TTATCATGGA AATTGCTTGT ACCAGGTCTT 452 CTGATGATCT TTTTAAGGCG AGGCAGGCCT ACCATGCTCG ATACAAGAAA TCACTTGAAG 57873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGATGATCT TTTTAAGGCG AGGCAGGCCT ACCATGCTCG ATACAAGAAA TCACTTGAAG 512 AAGATGTTGC TTATCATACA AGTGGGGA 57901 |||||||||| |||||||||| |||||||| AAGATGTTGC TTATCATACA AGTGGGGA 540 hqPGS_C04HBa0077O05.1+_SGN-E245265+ (55894 56078,57338 57483,57693 57901) ******************************************************************************** EST sequence 42 +strand 899 n (File: SGN-E553596+) 1 AAATAATTCA AGAACACACA GCACATTCTC AAGAAAGGGA AAAAAAATGT CTAGTCTTAA 61 AGTTCCAGCA TCAGTTCCAG ATCCTTATGA AGATGCTGAG CAACTCAAAA AAGCTTTTAA 121 AGGATGGGGC ACAAATGAGG AACTTATTAT TCAGATTCTG GCTCATAGGA ATGCAGCACA 181 ACGCAAGTTA ATCCGAGATT CTTATGCTGC TGCTTATGGA GAGGATCTTC TCAAGGACTT 241 GGATTCTGAA CTGACAAGTG ATTTTCAGCG TGTGGTGCTT CTCTGGACTT TGAGTCCTGC 301 TGAGCGCGAC GCCTACTTGG TTAATGAGGC TACCAAACGT CTGACTGCTA GCAATTGGGT 361 TATCATGGAA ATTGCTTGTA CCAGGTCTTC TGATGATCTT TTTAAGGCGA GGCAGGCCTA 421 CCATGCTCGA TACAAGAAAT CACTTGAAGA AGATGTTGCT TATCATACAA GTGGGGATTT 481 CCGTAAGCTT TTGGTTCCTC TTATAACTGC ATTCAGATAT GAAGGAGATG AGGTGAACAT 541 GACATTAGCA AGAAAGGAAG CAAATATACT GCATGAGAAG ATCTCTGACA AGGCTTACAA 601 TGACGAGGAG ATCATCCGAA TCATTTCTAC TAGGAGTAAA GCACAGCTGA GTGCTACGTT 661 CAACCACTAC AATGATCACC ATGGCCATGA AATCATCAAG GATCTGGAAG CTGATGATGA 721 CGATGAGTAC CTGAAACTAC TCAGAGCAGC AATAGAATGC TTGAAAACCC CAGAGAAACA 781 CTTTGAGAAA GTTCTTCGAT TGGCTATCAA GAAGCTGGGT ACAGACGAAT GGGATCTTAC 841 TAGAGTTGTT GCCACTCGGG CTGAAGTTGA CATGGAGCGT ATCAAAGAAG AGTACCATA Predicted gene structure (within gDNA segment 55357 to 59790): Exon 1 55957 56078 ( 122 n); cDNA 1 122 ( 122 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 123 268 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 269 487 ( 219 n); score: 1.000 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 1.00) Exon 4 58681 58893 ( 213 n); cDNA 488 700 ( 213 n); score: 1.000 Intron 4 58894 58981 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58982 59180 ( 199 n); cDNA 701 899 ( 199 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E553596+ 1.000 899 1.000 C PGS_C04HBa0077O05.1+_SGN-E553596+ (55957 56078,57338 57483,57693 57911,58681 58893,58982 59180) Alignment (genomic DNA sequence = upper lines): AAATAATTCA AGAACACACA GCACATTCTC AAGAAAGGGA AAAAAAATGT CTAGTCTTAA 56016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATAATTCA AGAACACACA GCACATTCTC AAGAAAGGGA AAAAAAATGT CTAGTCTTAA 60 AGTTCCAGCA TCAGTTCCAG ATCCTTATGA AGATGCTGAG CAACTCAAAA AAGCTTTTAA 56076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCCAGCA TCAGTTCCAG ATCCTTATGA AGATGCTGAG CAACTCAAAA AAGCTTTTAA 120 AGGTTTCACT TTTTTTTTCT TCCAGATCCC CTTTGGTTGG ATTTTGTATG CCTGATTTTA 56136 || AG........ .......... .......... .......... .......... .......... 122 GTGCAAGATT TCTTTTCTAT ATTTGCATTT GCTATTTTTC TTGAATGATC AGTTGATTTT 56196 .......... .......... .......... .......... .......... .......... 122 TACTTTTCCT TACTGTTTTT TCCTAGTTTA GTTTAGTTTT AGTTCTTGAT GGGGTTCTTG 56256 .......... .......... .......... .......... .......... .......... 122 TGATCTGAAT GATCTATTCA AAATTGTTTC GAAATGTAAC ATAGACCATC TGCTGACTCT 56316 .......... .......... .......... .......... .......... .......... 122 AAATCTTGAA TCTGTCTCGG TTAGGTAAAA TGCTGTGTGA TTTTTTATTT AATTCATTGT 56376 .......... .......... .......... .......... .......... .......... 122 TGGAGGAAAT TAGTGATCTT TGACTGTAGG CATATGTAGA AGACATTTTT CTTTATGATT 56436 .......... .......... .......... .......... .......... .......... 122 CTGTGTAGTC ATTTCCCAAA CGTATGATTG GTCTAGATTA TTAATTTGTT GACAAAAATG 56496 .......... .......... .......... .......... .......... .......... 122 ATTAACTCCA ATTCTCCGTG GTGGTTAGGC TGATTATGAT GTATGGGGCG AGTGGAGTGT 56556 .......... .......... .......... .......... .......... .......... 122 TGGTTAGTTA AGAATTCTAA TGTCAAAAGA TATGAGGTGG CGAAAATGAG GACGCTGAGG 56616 .......... .......... .......... .......... .......... .......... 122 TGGATGTGGA TATGTAGGAG AGATAAAGAT TAAGAATGAA GATATCCAAC ATAACGTGGG 56676 .......... .......... .......... .......... .......... .......... 122 AGTGGCTTCC GTGATGGACA AGATGAGGGA AGTGAGACTG AGATGGTTTA GACATGATAT 56736 .......... .......... .......... .......... .......... .......... 122 GTGAAGAGGA GGTGCACAGC GATCTAGGGA GAAATGTTAG AGGTTGGCCG TAGTGAGTTT 56796 .......... .......... .......... .......... .......... .......... 122 TAGGAGACGT AGAGGGAAAC CAAAAAAGTG TTGGGAGGGG TGATTAGACA AAACATGACG 56856 .......... .......... .......... .......... .......... .......... 122 CAACTTCAGC TTTCCGATGA TATGATTCTA GATTGAAGGT TATGGAGGTC ACGGATTAGG 56916 .......... .......... .......... .......... .......... .......... 122 GTAGAAGGTT AGTAAATAGT TGAATGTTGT CTCGTTTCCA AGGGGATAGC TTGGTGGTAG 56976 .......... .......... .......... .......... .......... .......... 122 TTTTGTTTCA TTGTACCTAT TTCCCCAGTA ATACAAGTAG TAGTAGCATT TTCTCATAGT 57036 .......... .......... .......... .......... .......... .......... 122 TGTCTGTCTT GCAATTTTTG TTGCTCGTTA TTTACTGTGC TTCTGTTATC ACATTAGTTG 57096 .......... .......... .......... .......... .......... .......... 122 GTTATTGTTA TTGCTCTTGT TTTTTGAATG CTCTAGGTTA TGCTTTCCCT TTAATTTTCA 57156 .......... .......... .......... .......... .......... .......... 122 ATGTCCTGTT ACTCTGTTGT GTGTTTTGGG AACAGCCTAT CTACCTCCAC GAGGTAGGGT 57216 .......... .......... .......... .......... .......... .......... 122 TTAGGTTCCT CCCCAGACCC CGACTATGGG ACTACATCGA GTTTGCTGTT GTTGTTTGGG 57276 .......... .......... .......... .......... .......... .......... 122 CTTGCAAAGC AGGAAGCTGA ATTTTGTTTT CCACAGAAGA CTCATGGTTA AACGTTTGCA 57336 .......... .......... .......... .......... .......... .......... 122 GGATGGGGCA CAAATGAGGA ACTTATTATT CAGATTCTGG CTCATAGGAA TGCAGCACAA 57396 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GATGGGGCA CAAATGAGGA ACTTATTATT CAGATTCTGG CTCATAGGAA TGCAGCACAA 181 CGCAAGTTAA TCCGAGATTC TTATGCTGCT GCTTATGGAG AGGATCTTCT CAAGGACTTG 57456 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCAAGTTAA TCCGAGATTC TTATGCTGCT GCTTATGGAG AGGATCTTCT CAAGGACTTG 241 GATTCTGAAC TGACAAGTGA TTTTCAGGTT AATTAATCTC AATTTTCCAT TCTTGTTCCA 57516 |||||||||| |||||||||| ||||||| GATTCTGAAC TGACAAGTGA TTTTCAG... .......... .......... .......... 268 AATTGTGTTG GAGTACACCC CGTTTAATCA ATCATTGTGG TGTATTGAAT GTTTTTCTTT 57576 .......... .......... .......... .......... .......... .......... 268 TTGTTCATTT ATACTTTCTT AGATTTGTCT AGTCCATATC TACATTATTA ATCACAGGTA 57636 .......... .......... .......... .......... .......... .......... 268 ACATTAGCCA AGGATTGCTT TGACTAATAT ATAATTTGAT TCACATGATA TTGCAGCGTG 57696 |||| .......... .......... .......... .......... .......... ......CGTG 272 TGGTGCTTCT CTGGACTTTG AGTCCTGCTG AGCGCGACGC CTACTTGGTT AATGAGGCTA 57756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGCTTCT CTGGACTTTG AGTCCTGCTG AGCGCGACGC CTACTTGGTT AATGAGGCTA 332 CCAAACGTCT GACTGCTAGC AATTGGGTTA TCATGGAAAT TGCTTGTACC AGGTCTTCTG 57816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAACGTCT GACTGCTAGC AATTGGGTTA TCATGGAAAT TGCTTGTACC AGGTCTTCTG 392 ATGATCTTTT TAAGGCGAGG CAGGCCTACC ATGCTCGATA CAAGAAATCA CTTGAAGAAG 57876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATCTTTT TAAGGCGAGG CAGGCCTACC ATGCTCGATA CAAGAAATCA CTTGAAGAAG 452 ATGTTGCTTA TCATACAAGT GGGGATTTCC GTAAGGTACT TCGCATATAA GATCTACTGT 57936 |||||||||| |||||||||| |||||||||| ||||| ATGTTGCTTA TCATACAAGT GGGGATTTCC GTAAG..... .......... .......... 487 GCCACATTTA ATTCATTGTT ATTCTAGTGC CAGTCAACTT TGTCATTAGA TCAGCTGTAG 57996 .......... .......... .......... .......... .......... .......... 487 AGAAAAACCT ATAGTCAGCC GAAGTTTGCT AAAGAATCTG CCACTTTGTT GTTTTCTATA 58056 .......... .......... .......... .......... .......... .......... 487 AATCTATAGA CGATTCTGAA ATTACTAGCC GAGAATTTGG ATGAAATGAA GCTCCACCAT 58116 .......... .......... .......... .......... .......... .......... 487 GAGTCTAGGT ATCGGCAATT CTTGGGGCTT TTTTATTTTC ATTGAAGCGA TTATTTGACT 58176 .......... .......... .......... .......... .......... .......... 487 GTTTAGTGAT TCGAGAACCA GAAGATCATT TTGCCTAGTA AAGCTCATCA ACTCTTCTTT 58236 .......... .......... .......... .......... .......... .......... 487 TTGCTCGTTG TGACTTCTTA AGGATGATTC TTTCTACCAT GTAAGCTGTT GCACTTGCGC 58296 .......... .......... .......... .......... .......... .......... 487 CTATTTGCCA CCTTTGGGGT GTTTAAGATG AATGATAAAC GGTGACAAGT GATGGATAGT 58356 .......... .......... .......... .......... .......... .......... 487 CTCCGGTTAC GACCATCCAC CTCCAGCCAT AACGTTGGGG GTTAACCTCA CCAAGGGAGC 58416 .......... .......... .......... .......... .......... .......... 487 GAAGTGGAGA AGGATCACCG TTGTTGTGCT CTTGAGCCAG GGGAAACTGA GGTTACGGTT 58476 .......... .......... .......... .......... .......... .......... 487 TACTGTGTCC AAAAAATAAA ATAAAAGGTT TAAGGATGAT AGTGTCTGAG ATAACAGTGT 58536 .......... .......... .......... .......... .......... .......... 487 AAATAGTTAG ATAAGCACCT TAAAGTTAGA TTTTTGTGTT GTCTGTCTTT GTCTCCAGTG 58596 .......... .......... .......... .......... .......... .......... 487 AATACTGAGA ATACATGCAA CAAATAAATC TTGCAATCAC CGTCGTTAAG CTGGTCATAT 58656 .......... .......... .......... .......... .......... .......... 487 TGTATTAAAC TAATTCCCGA ACAGCTTTTG GTTCCTCTTA TAACTGCATT CAGATATGAA 58716 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....CTTTTG GTTCCTCTTA TAACTGCATT CAGATATGAA 523 GGAGATGAGG TGAACATGAC ATTAGCAAGA AAGGAAGCAA ATATACTGCA TGAGAAGATC 58776 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGATGAGG TGAACATGAC ATTAGCAAGA AAGGAAGCAA ATATACTGCA TGAGAAGATC 583 TCTGACAAGG CTTACAATGA CGAGGAGATC ATCCGAATCA TTTCTACTAG GAGTAAAGCA 58836 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGACAAGG CTTACAATGA CGAGGAGATC ATCCGAATCA TTTCTACTAG GAGTAAAGCA 643 CAGCTGAGTG CTACGTTCAA CCACTACAAT GATCACCATG GCCATGAAAT CATCAAGGTA 58896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CAGCTGAGTG CTACGTTCAA CCACTACAAT GATCACCATG GCCATGAAAT CATCAAG... 700 AAACTCAAAC ATTAGAAAGA CTTGAAATTA TGTTAGTTAC CATTGTTTAA AAGGGATCTA 58956 .......... .......... .......... .......... .......... .......... 700 TTCATTGTAC TGTGTGATGA TGCAGGATCT GGAAGCTGAT GATGACGATG AGTACCTGAA 59016 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GATCT GGAAGCTGAT GATGACGATG AGTACCTGAA 735 ACTACTCAGA GCAGCAATAG AATGCTTGAA AACCCCAGAG AAACACTTTG AGAAAGTTCT 59076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTACTCAGA GCAGCAATAG AATGCTTGAA AACCCCAGAG AAACACTTTG AGAAAGTTCT 795 TCGATTGGCT ATCAAGAAGC TGGGTACAGA CGAATGGGAT CTTACTAGAG TTGTTGCCAC 59136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATTGGCT ATCAAGAAGC TGGGTACAGA CGAATGGGAT CTTACTAGAG TTGTTGCCAC 855 TCGGGCTGAA GTTGACATGG AGCGTATCAA AGAAGAGTAC CATA 59180 |||||||||| |||||||||| |||||||||| |||||||||| |||| TCGGGCTGAA GTTGACATGG AGCGTATCAA AGAAGAGTAC CATA 899 hqPGS_C04HBa0077O05.1+_SGN-E553596+ (55957 56078,57338 57483,57693 57911,58681 58893,58982 59180) ******************************************************************************** EST sequence 128 +strand 629 n (File: SGN-E309088+) 1 TAATTCAAGA ACACACAGCA CATTCTCAAG AAAGGGAAAA AAAATGTCTA GTCTTAAAGT 61 TCCAGCATCA GTTCCAGATC CTTATGAAGA TGCTGAGCAA CTCAAAAAAG CTTTTAAAGG 121 ATGGGGCACA AATGAGGAAC TTATTATTCA GATTCTGGCT CATAGGAATG CAGCACAACG 181 CAAGTTAATC CGAGATTCTT ATGCTGCTGC TTATGGAGAG GATCTTCTCA AGGACTTGGA 241 TTCTGAACTG ACAAGTGATT TTCAGCGTGT GGTGCTTCTC TGGACTTTGA GTCCTGCTGA 301 GCGCGACGCC TACTTGGTTA ATGAGGCTAC CAAACGTCTG ACTGCTAGCA ATTGGGTTAT 361 CATGGAAATT GCTTGTACCA GGTCTTCTGA TGATCTTTTT AAGGCGAGGC AGGCCTACCA 421 TGCTCGATAC AAGAAATCAC TTGAAGAAGA TGTTGCTTAT CATACAAGTG GGGATTTCCG 481 TAAGCTTTTG GTTCCTCTTA TAACTGCATT CAGATATGAA GGAGATGAGG TGAACATGAC 541 ATTAGCAAGA AAGGAAGCAA ATATACTGCA TGAGAAGATC TCTGACAAGG CTTACAATGA 601 CGAGGAGATC ATCCGAATCA TTTCTACTA Predicted gene structure (within gDNA segment 55360 to 59435): Exon 1 55960 56078 ( 119 n); cDNA 1 119 ( 119 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 120 265 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 266 484 ( 219 n); score: 1.000 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 1.00) Exon 4 58681 58825 ( 145 n); cDNA 485 629 ( 145 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E309088+ 1.000 629 1.000 C PGS_C04HBa0077O05.1+_SGN-E309088+ (55960 56078,57338 57483,57693 57911,58681 58825) Alignment (genomic DNA sequence = upper lines): TAATTCAAGA ACACACAGCA CATTCTCAAG AAAGGGAAAA AAAATGTCTA GTCTTAAAGT 56019 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATTCAAGA ACACACAGCA CATTCTCAAG AAAGGGAAAA AAAATGTCTA GTCTTAAAGT 60 TCCAGCATCA GTTCCAGATC CTTATGAAGA TGCTGAGCAA CTCAAAAAAG CTTTTAAAGG 56079 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCCAGCATCA GTTCCAGATC CTTATGAAGA TGCTGAGCAA CTCAAAAAAG CTTTTAAAG. 119 TTTCACTTTT TTTTTCTTCC AGATCCCCTT TGGTTGGATT TTGTATGCCT GATTTTAGTG 56139 .......... .......... .......... .......... .......... .......... 119 CAAGATTTCT TTTCTATATT TGCATTTGCT ATTTTTCTTG AATGATCAGT TGATTTTTAC 56199 .......... .......... .......... .......... .......... .......... 119 TTTTCCTTAC TGTTTTTTCC TAGTTTAGTT TAGTTTTAGT TCTTGATGGG GTTCTTGTGA 56259 .......... .......... .......... .......... .......... .......... 119 TCTGAATGAT CTATTCAAAA TTGTTTCGAA ATGTAACATA GACCATCTGC TGACTCTAAA 56319 .......... .......... .......... .......... .......... .......... 119 TCTTGAATCT GTCTCGGTTA GGTAAAATGC TGTGTGATTT TTTATTTAAT TCATTGTTGG 56379 .......... .......... .......... .......... .......... .......... 119 AGGAAATTAG TGATCTTTGA CTGTAGGCAT ATGTAGAAGA CATTTTTCTT TATGATTCTG 56439 .......... .......... .......... .......... .......... .......... 119 TGTAGTCATT TCCCAAACGT ATGATTGGTC TAGATTATTA ATTTGTTGAC AAAAATGATT 56499 .......... .......... .......... .......... .......... .......... 119 AACTCCAATT CTCCGTGGTG GTTAGGCTGA TTATGATGTA TGGGGCGAGT GGAGTGTTGG 56559 .......... .......... .......... .......... .......... .......... 119 TTAGTTAAGA ATTCTAATGT CAAAAGATAT GAGGTGGCGA AAATGAGGAC GCTGAGGTGG 56619 .......... .......... .......... .......... .......... .......... 119 ATGTGGATAT GTAGGAGAGA TAAAGATTAA GAATGAAGAT ATCCAACATA ACGTGGGAGT 56679 .......... .......... .......... .......... .......... .......... 119 GGCTTCCGTG ATGGACAAGA TGAGGGAAGT GAGACTGAGA TGGTTTAGAC ATGATATGTG 56739 .......... .......... .......... .......... .......... .......... 119 AAGAGGAGGT GCACAGCGAT CTAGGGAGAA ATGTTAGAGG TTGGCCGTAG TGAGTTTTAG 56799 .......... .......... .......... .......... .......... .......... 119 GAGACGTAGA GGGAAACCAA AAAAGTGTTG GGAGGGGTGA TTAGACAAAA CATGACGCAA 56859 .......... .......... .......... .......... .......... .......... 119 CTTCAGCTTT CCGATGATAT GATTCTAGAT TGAAGGTTAT GGAGGTCACG GATTAGGGTA 56919 .......... .......... .......... .......... .......... .......... 119 GAAGGTTAGT AAATAGTTGA ATGTTGTCTC GTTTCCAAGG GGATAGCTTG GTGGTAGTTT 56979 .......... .......... .......... .......... .......... .......... 119 TGTTTCATTG TACCTATTTC CCCAGTAATA CAAGTAGTAG TAGCATTTTC TCATAGTTGT 57039 .......... .......... .......... .......... .......... .......... 119 CTGTCTTGCA ATTTTTGTTG CTCGTTATTT ACTGTGCTTC TGTTATCACA TTAGTTGGTT 57099 .......... .......... .......... .......... .......... .......... 119 ATTGTTATTG CTCTTGTTTT TTGAATGCTC TAGGTTATGC TTTCCCTTTA ATTTTCAATG 57159 .......... .......... .......... .......... .......... .......... 119 TCCTGTTACT CTGTTGTGTG TTTTGGGAAC AGCCTATCTA CCTCCACGAG GTAGGGTTTA 57219 .......... .......... .......... .......... .......... .......... 119 GGTTCCTCCC CAGACCCCGA CTATGGGACT ACATCGAGTT TGCTGTTGTT GTTTGGGCTT 57279 .......... .......... .......... .......... .......... .......... 119 GCAAAGCAGG AAGCTGAATT TTGTTTTCCA CAGAAGACTC ATGGTTAAAC GTTTGCAGGA 57339 || .......... .......... .......... .......... .......... ........GA 121 TGGGGCACAA ATGAGGAACT TATTATTCAG ATTCTGGCTC ATAGGAATGC AGCACAACGC 57399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGGCACAA ATGAGGAACT TATTATTCAG ATTCTGGCTC ATAGGAATGC AGCACAACGC 181 AAGTTAATCC GAGATTCTTA TGCTGCTGCT TATGGAGAGG ATCTTCTCAA GGACTTGGAT 57459 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTAATCC GAGATTCTTA TGCTGCTGCT TATGGAGAGG ATCTTCTCAA GGACTTGGAT 241 TCTGAACTGA CAAGTGATTT TCAGGTTAAT TAATCTCAAT TTTCCATTCT TGTTCCAAAT 57519 |||||||||| |||||||||| |||| TCTGAACTGA CAAGTGATTT TCAG...... .......... .......... .......... 265 TGTGTTGGAG TACACCCCGT TTAATCAATC ATTGTGGTGT ATTGAATGTT TTTCTTTTTG 57579 .......... .......... .......... .......... .......... .......... 265 TTCATTTATA CTTTCTTAGA TTTGTCTAGT CCATATCTAC ATTATTAATC ACAGGTAACA 57639 .......... .......... .......... .......... .......... .......... 265 TTAGCCAAGG ATTGCTTTGA CTAATATATA ATTTGATTCA CATGATATTG CAGCGTGTGG 57699 ||||||| .......... .......... .......... .......... .......... ...CGTGTGG 272 TGCTTCTCTG GACTTTGAGT CCTGCTGAGC GCGACGCCTA CTTGGTTAAT GAGGCTACCA 57759 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTCTCTG GACTTTGAGT CCTGCTGAGC GCGACGCCTA CTTGGTTAAT GAGGCTACCA 332 AACGTCTGAC TGCTAGCAAT TGGGTTATCA TGGAAATTGC TTGTACCAGG TCTTCTGATG 57819 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGTCTGAC TGCTAGCAAT TGGGTTATCA TGGAAATTGC TTGTACCAGG TCTTCTGATG 392 ATCTTTTTAA GGCGAGGCAG GCCTACCATG CTCGATACAA GAAATCACTT GAAGAAGATG 57879 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTTTTAA GGCGAGGCAG GCCTACCATG CTCGATACAA GAAATCACTT GAAGAAGATG 452 TTGCTTATCA TACAAGTGGG GATTTCCGTA AGGTACTTCG CATATAAGAT CTACTGTGCC 57939 |||||||||| |||||||||| |||||||||| || TTGCTTATCA TACAAGTGGG GATTTCCGTA AG........ .......... .......... 484 ACATTTAATT CATTGTTATT CTAGTGCCAG TCAACTTTGT CATTAGATCA GCTGTAGAGA 57999 .......... .......... .......... .......... .......... .......... 484 AAAACCTATA GTCAGCCGAA GTTTGCTAAA GAATCTGCCA CTTTGTTGTT TTCTATAAAT 58059 .......... .......... .......... .......... .......... .......... 484 CTATAGACGA TTCTGAAATT ACTAGCCGAG AATTTGGATG AAATGAAGCT CCACCATGAG 58119 .......... .......... .......... .......... .......... .......... 484 TCTAGGTATC GGCAATTCTT GGGGCTTTTT TATTTTCATT GAAGCGATTA TTTGACTGTT 58179 .......... .......... .......... .......... .......... .......... 484 TAGTGATTCG AGAACCAGAA GATCATTTTG CCTAGTAAAG CTCATCAACT CTTCTTTTTG 58239 .......... .......... .......... .......... .......... .......... 484 CTCGTTGTGA CTTCTTAAGG ATGATTCTTT CTACCATGTA AGCTGTTGCA CTTGCGCCTA 58299 .......... .......... .......... .......... .......... .......... 484 TTTGCCACCT TTGGGGTGTT TAAGATGAAT GATAAACGGT GACAAGTGAT GGATAGTCTC 58359 .......... .......... .......... .......... .......... .......... 484 CGGTTACGAC CATCCACCTC CAGCCATAAC GTTGGGGGTT AACCTCACCA AGGGAGCGAA 58419 .......... .......... .......... .......... .......... .......... 484 GTGGAGAAGG ATCACCGTTG TTGTGCTCTT GAGCCAGGGG AAACTGAGGT TACGGTTTAC 58479 .......... .......... .......... .......... .......... .......... 484 TGTGTCCAAA AAATAAAATA AAAGGTTTAA GGATGATAGT GTCTGAGATA ACAGTGTAAA 58539 .......... .......... .......... .......... .......... .......... 484 TAGTTAGATA AGCACCTTAA AGTTAGATTT TTGTGTTGTC TGTCTTTGTC TCCAGTGAAT 58599 .......... .......... .......... .......... .......... .......... 484 ACTGAGAATA CATGCAACAA ATAAATCTTG CAATCACCGT CGTTAAGCTG GTCATATTGT 58659 .......... .......... .......... .......... .......... .......... 484 ATTAAACTAA TTCCCGAACA GCTTTTGGTT CCTCTTATAA CTGCATTCAG ATATGAAGGA 58719 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .CTTTTGGTT CCTCTTATAA CTGCATTCAG ATATGAAGGA 523 GATGAGGTGA ACATGACATT AGCAAGAAAG GAAGCAAATA TACTGCATGA GAAGATCTCT 58779 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAGGTGA ACATGACATT AGCAAGAAAG GAAGCAAATA TACTGCATGA GAAGATCTCT 583 GACAAGGCTT ACAATGACGA GGAGATCATC CGAATCATTT CTACTA 58825 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GACAAGGCTT ACAATGACGA GGAGATCATC CGAATCATTT CTACTA 629 hqPGS_C04HBa0077O05.1+_SGN-E309088+ (55960 56078,57338 57483,57693 57911,58681 58825) ******************************************************************************** EST sequence 75 +strand 720 n (File: SGN-E556478+) 1 ACAGCACATT CTCAAGAAAG GGAAAAAAAA TGTCTAGTCT TAAAGTTCCA GCATCAGTTC 61 CAGATCCTTA TGAAGATGCT GAGCAACTCA AAAAAGCTTT TAAAGGATGG GGCACAAATG 121 AGGAACTTAT TATTCAGATT CTGGCTCATA GGAATGCAGC ACAACGCAAG TTAATCCGAG 181 ATTCTTATGC TGCTGCTTAT GGAGAGGATC TTCTCAAGGA CTTGGATTCT GAACTGACAA 241 GTGATTTTCA GCGTGTGGTG CTTCTCTGGA CTTTGAGTCC TGCTGAGCGC GACGCCTACT 301 TGGTTAATGA GGCTACCAAA CGTCTGACTG CTAGCAATTG GGTTATCATG GAAATTGCTT 361 GTACCAGGTC TTCTGATGAT CTTTTTAAGG CGAGGCAGGC CTACCATGCT CGATACAAGA 421 AATCACTTGA AGAAGATGTT GCTTATCATA CAAGTGGGGA TTTCCGTAAG CTTTTGGTTC 481 CTCTTATAAC TGCATTCAGA TATGAAGGAG ATGAGGTGAA CATGACATTA GCAAGAAAGG 541 AAGCAAATAT ACTGCATGAG AAGATCTCTG ACAAGGCTTA CAATGACGAG GAGATCATCC 601 GAATCATTTC TACTAGGAGT AAAGCACAGC TGAGTGCTAC GTTCAACCAC TACAATGATC 661 ACCATGGCCA TGAAATCATC AAGGATCTGG AAGCTGAAGA TGACGATGAG TACCTGAAAC Predicted gene structure (within gDNA segment 55374 to 59628): Exon 1 55974 56078 ( 105 n); cDNA 1 105 ( 105 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 106 251 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 252 470 ( 219 n); score: 1.000 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 1.00) Exon 4 58681 58893 ( 213 n); cDNA 471 683 ( 213 n); score: 1.000 Intron 4 58894 58981 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 0) Exon 5 58982 59018 ( 37 n); cDNA 684 720 ( 37 n); score: 0.973 MATCH C04HBa0077O05.1+ SGN-E556478+ 1.000 720 1.000 C PGS_C04HBa0077O05.1+_SGN-E556478+ (55974 56078,57338 57483,57693 57911,58681 58893,58982 59018) Alignment (genomic DNA sequence = upper lines): ACAGCACATT CTCAAGAAAG GGAAAAAAAA TGTCTAGTCT TAAAGTTCCA GCATCAGTTC 56033 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCACATT CTCAAGAAAG GGAAAAAAAA TGTCTAGTCT TAAAGTTCCA GCATCAGTTC 60 CAGATCCTTA TGAAGATGCT GAGCAACTCA AAAAAGCTTT TAAAGGTTTC ACTTTTTTTT 56093 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CAGATCCTTA TGAAGATGCT GAGCAACTCA AAAAAGCTTT TAAAG..... .......... 105 TCTTCCAGAT CCCCTTTGGT TGGATTTTGT ATGCCTGATT TTAGTGCAAG ATTTCTTTTC 56153 .......... .......... .......... .......... .......... .......... 105 TATATTTGCA TTTGCTATTT TTCTTGAATG ATCAGTTGAT TTTTACTTTT CCTTACTGTT 56213 .......... .......... .......... .......... .......... .......... 105 TTTTCCTAGT TTAGTTTAGT TTTAGTTCTT GATGGGGTTC TTGTGATCTG AATGATCTAT 56273 .......... .......... .......... .......... .......... .......... 105 TCAAAATTGT TTCGAAATGT AACATAGACC ATCTGCTGAC TCTAAATCTT GAATCTGTCT 56333 .......... .......... .......... .......... .......... .......... 105 CGGTTAGGTA AAATGCTGTG TGATTTTTTA TTTAATTCAT TGTTGGAGGA AATTAGTGAT 56393 .......... .......... .......... .......... .......... .......... 105 CTTTGACTGT AGGCATATGT AGAAGACATT TTTCTTTATG ATTCTGTGTA GTCATTTCCC 56453 .......... .......... .......... .......... .......... .......... 105 AAACGTATGA TTGGTCTAGA TTATTAATTT GTTGACAAAA ATGATTAACT CCAATTCTCC 56513 .......... .......... .......... .......... .......... .......... 105 GTGGTGGTTA GGCTGATTAT GATGTATGGG GCGAGTGGAG TGTTGGTTAG TTAAGAATTC 56573 .......... .......... .......... .......... .......... .......... 105 TAATGTCAAA AGATATGAGG TGGCGAAAAT GAGGACGCTG AGGTGGATGT GGATATGTAG 56633 .......... .......... .......... .......... .......... .......... 105 GAGAGATAAA GATTAAGAAT GAAGATATCC AACATAACGT GGGAGTGGCT TCCGTGATGG 56693 .......... .......... .......... .......... .......... .......... 105 ACAAGATGAG GGAAGTGAGA CTGAGATGGT TTAGACATGA TATGTGAAGA GGAGGTGCAC 56753 .......... .......... .......... .......... .......... .......... 105 AGCGATCTAG GGAGAAATGT TAGAGGTTGG CCGTAGTGAG TTTTAGGAGA CGTAGAGGGA 56813 .......... .......... .......... .......... .......... .......... 105 AACCAAAAAA GTGTTGGGAG GGGTGATTAG ACAAAACATG ACGCAACTTC AGCTTTCCGA 56873 .......... .......... .......... .......... .......... .......... 105 TGATATGATT CTAGATTGAA GGTTATGGAG GTCACGGATT AGGGTAGAAG GTTAGTAAAT 56933 .......... .......... .......... .......... .......... .......... 105 AGTTGAATGT TGTCTCGTTT CCAAGGGGAT AGCTTGGTGG TAGTTTTGTT TCATTGTACC 56993 .......... .......... .......... .......... .......... .......... 105 TATTTCCCCA GTAATACAAG TAGTAGTAGC ATTTTCTCAT AGTTGTCTGT CTTGCAATTT 57053 .......... .......... .......... .......... .......... .......... 105 TTGTTGCTCG TTATTTACTG TGCTTCTGTT ATCACATTAG TTGGTTATTG TTATTGCTCT 57113 .......... .......... .......... .......... .......... .......... 105 TGTTTTTTGA ATGCTCTAGG TTATGCTTTC CCTTTAATTT TCAATGTCCT GTTACTCTGT 57173 .......... .......... .......... .......... .......... .......... 105 TGTGTGTTTT GGGAACAGCC TATCTACCTC CACGAGGTAG GGTTTAGGTT CCTCCCCAGA 57233 .......... .......... .......... .......... .......... .......... 105 CCCCGACTAT GGGACTACAT CGAGTTTGCT GTTGTTGTTT GGGCTTGCAA AGCAGGAAGC 57293 .......... .......... .......... .......... .......... .......... 105 TGAATTTTGT TTTCCACAGA AGACTCATGG TTAAACGTTT GCAGGATGGG GCACAAATGA 57353 |||||| |||||||||| .......... .......... .......... .......... ....GATGGG GCACAAATGA 121 GGAACTTATT ATTCAGATTC TGGCTCATAG GAATGCAGCA CAACGCAAGT TAATCCGAGA 57413 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAACTTATT ATTCAGATTC TGGCTCATAG GAATGCAGCA CAACGCAAGT TAATCCGAGA 181 TTCTTATGCT GCTGCTTATG GAGAGGATCT TCTCAAGGAC TTGGATTCTG AACTGACAAG 57473 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTATGCT GCTGCTTATG GAGAGGATCT TCTCAAGGAC TTGGATTCTG AACTGACAAG 241 TGATTTTCAG GTTAATTAAT CTCAATTTTC CATTCTTGTT CCAAATTGTG TTGGAGTACA 57533 |||||||||| TGATTTTCAG .......... .......... .......... .......... .......... 251 CCCCGTTTAA TCAATCATTG TGGTGTATTG AATGTTTTTC TTTTTGTTCA TTTATACTTT 57593 .......... .......... .......... .......... .......... .......... 251 CTTAGATTTG TCTAGTCCAT ATCTACATTA TTAATCACAG GTAACATTAG CCAAGGATTG 57653 .......... .......... .......... .......... .......... .......... 251 CTTTGACTAA TATATAATTT GATTCACATG ATATTGCAGC GTGTGGTGCT TCTCTGGACT 57713 | |||||||||| |||||||||| .......... .......... .......... .........C GTGTGGTGCT TCTCTGGACT 272 TTGAGTCCTG CTGAGCGCGA CGCCTACTTG GTTAATGAGG CTACCAAACG TCTGACTGCT 57773 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGTCCTG CTGAGCGCGA CGCCTACTTG GTTAATGAGG CTACCAAACG TCTGACTGCT 332 AGCAATTGGG TTATCATGGA AATTGCTTGT ACCAGGTCTT CTGATGATCT TTTTAAGGCG 57833 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAATTGGG TTATCATGGA AATTGCTTGT ACCAGGTCTT CTGATGATCT TTTTAAGGCG 392 AGGCAGGCCT ACCATGCTCG ATACAAGAAA TCACTTGAAG AAGATGTTGC TTATCATACA 57893 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCAGGCCT ACCATGCTCG ATACAAGAAA TCACTTGAAG AAGATGTTGC TTATCATACA 452 AGTGGGGATT TCCGTAAGGT ACTTCGCATA TAAGATCTAC TGTGCCACAT TTAATTCATT 57953 |||||||||| |||||||| AGTGGGGATT TCCGTAAG.. .......... .......... .......... .......... 470 GTTATTCTAG TGCCAGTCAA CTTTGTCATT AGATCAGCTG TAGAGAAAAA CCTATAGTCA 58013 .......... .......... .......... .......... .......... .......... 470 GCCGAAGTTT GCTAAAGAAT CTGCCACTTT GTTGTTTTCT ATAAATCTAT AGACGATTCT 58073 .......... .......... .......... .......... .......... .......... 470 GAAATTACTA GCCGAGAATT TGGATGAAAT GAAGCTCCAC CATGAGTCTA GGTATCGGCA 58133 .......... .......... .......... .......... .......... .......... 470 ATTCTTGGGG CTTTTTTATT TTCATTGAAG CGATTATTTG ACTGTTTAGT GATTCGAGAA 58193 .......... .......... .......... .......... .......... .......... 470 CCAGAAGATC ATTTTGCCTA GTAAAGCTCA TCAACTCTTC TTTTTGCTCG TTGTGACTTC 58253 .......... .......... .......... .......... .......... .......... 470 TTAAGGATGA TTCTTTCTAC CATGTAAGCT GTTGCACTTG CGCCTATTTG CCACCTTTGG 58313 .......... .......... .......... .......... .......... .......... 470 GGTGTTTAAG ATGAATGATA AACGGTGACA AGTGATGGAT AGTCTCCGGT TACGACCATC 58373 .......... .......... .......... .......... .......... .......... 470 CACCTCCAGC CATAACGTTG GGGGTTAACC TCACCAAGGG AGCGAAGTGG AGAAGGATCA 58433 .......... .......... .......... .......... .......... .......... 470 CCGTTGTTGT GCTCTTGAGC CAGGGGAAAC TGAGGTTACG GTTTACTGTG TCCAAAAAAT 58493 .......... .......... .......... .......... .......... .......... 470 AAAATAAAAG GTTTAAGGAT GATAGTGTCT GAGATAACAG TGTAAATAGT TAGATAAGCA 58553 .......... .......... .......... .......... .......... .......... 470 CCTTAAAGTT AGATTTTTGT GTTGTCTGTC TTTGTCTCCA GTGAATACTG AGAATACATG 58613 .......... .......... .......... .......... .......... .......... 470 CAACAAATAA ATCTTGCAAT CACCGTCGTT AAGCTGGTCA TATTGTATTA AACTAATTCC 58673 .......... .......... .......... .......... .......... .......... 470 CGAACAGCTT TTGGTTCCTC TTATAACTGC ATTCAGATAT GAAGGAGATG AGGTGAACAT 58733 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......CTT TTGGTTCCTC TTATAACTGC ATTCAGATAT GAAGGAGATG AGGTGAACAT 523 GACATTAGCA AGAAAGGAAG CAAATATACT GCATGAGAAG ATCTCTGACA AGGCTTACAA 58793 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACATTAGCA AGAAAGGAAG CAAATATACT GCATGAGAAG ATCTCTGACA AGGCTTACAA 583 TGACGAGGAG ATCATCCGAA TCATTTCTAC TAGGAGTAAA GCACAGCTGA GTGCTACGTT 58853 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGAGGAG ATCATCCGAA TCATTTCTAC TAGGAGTAAA GCACAGCTGA GTGCTACGTT 643 CAACCACTAC AATGATCACC ATGGCCATGA AATCATCAAG GTAAAACTCA AACATTAGAA 58913 |||||||||| |||||||||| |||||||||| |||||||||| CAACCACTAC AATGATCACC ATGGCCATGA AATCATCAAG .......... .......... 683 AGACTTGAAA TTATGTTAGT TACCATTGTT TAAAAGGGAT CTATTCATTG TACTGTGTGA 58973 .......... .......... .......... .......... .......... .......... 683 TGATGCAGGA TCTGGAAGCT GATGATGACG ATGAGTACCT GAAAC 59018 || |||||||||| || ||||||| |||||||||| ||||| ........GA TCTGGAAGCT GAAGATGACG ATGAGTACCT GAAAC 720 hqPGS_C04HBa0077O05.1+_SGN-E556478+ (55974 56078,57338 57483,57693 57911,58681 58893,58982 59018) ******************************************************************************** EST sequence 46 +strand 819 n (File: SGN-E553891+) 1 CACATTCTCA AGAAAGGGAA AAAAAATGTC TAGTCTTAAA GTTCCAGCAT CAGTTCCAGA 61 TCCTTATGAA GATGCTGAGC AACTCAAAAA AGCTTTTAAA GGATGGGGCA CAAATGAGGA 121 ACTTATTATT CAGATTCTGG CTCATAGGAA TGCAGCACAA CGCAAGTTAA TCCGAGATTC 181 TTATGCTGCT GCTTATGGAG AGGATCTTCT CAAGGACTTG GATTCTGAAC TGACAAGTGA 241 TTTTCAGCGT GTGGTGCTTC TCTGGACTTT GAGTCCTGCT GAGCGCGACG CCTACTTGGT 301 TAATGAGGCT ACCAAACGTC TGACTGCTAG CAATTGGGTT ATCATGGAAA TTGCTTGTAC 361 CAGGTCTTCT GATGATCTTT TTAAGGCGAG GCAGGCCTAC CATGCTCGAT ACAAGAAATC 421 ACTTGAAGAA GATGTTGCTT ATCATACAAG TGGGGATTTC CGTAAGCTTT TGGTTCCTCT 481 TATAACTGCA TTCAGATATG AAGGAGATGA GGTGAACATG ACATTAGCAA GAAAGGAAGC 541 AAATATACTG CATGAGAAGA TCTCTGACAA GGCTTACAAT GACGAGGAGA TCATCCGAAT 601 CATTTCTACT AGGAGTAAAG CACAGCTGAG TGCTACGTTC AACCACTACA ATGATCACCA 661 TGGCCATGAA ATCATCAAGG ATCTGGAAGC TGATGATGAC GATGAGTACC TGAAACTACT 721 CAGAGCAGCA ATAGAATGCT TGAAAACCCC AGAGAAACAC TTTGAGAAAG TCTTCGATTG 781 GCTATCAAGA AGCTGGGTAC AGACGAATGG GATCTTACT Predicted gene structure (within gDNA segment 55378 to 59732): Exon 1 55978 56078 ( 101 n); cDNA 1 101 ( 101 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 102 247 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 248 466 ( 219 n); score: 1.000 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 1.00) Exon 4 58681 58893 ( 213 n); cDNA 467 679 ( 213 n); score: 1.000 Intron 4 58894 58981 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58982 59122 ( 141 n); cDNA 680 819 ( 140 n); score: 0.993 MATCH C04HBa0077O05.1+ SGN-E553891+ 0.999 820 1.001 C PGS_C04HBa0077O05.1+_SGN-E553891+ (55978 56078,57338 57483,57693 57911,58681 58893,58982 59122) Alignment (genomic DNA sequence = upper lines): CACATTCTCA AGAAAGGGAA AAAAAATGTC TAGTCTTAAA GTTCCAGCAT CAGTTCCAGA 56037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACATTCTCA AGAAAGGGAA AAAAAATGTC TAGTCTTAAA GTTCCAGCAT CAGTTCCAGA 60 TCCTTATGAA GATGCTGAGC AACTCAAAAA AGCTTTTAAA GGTTTCACTT TTTTTTTCTT 56097 |||||||||| |||||||||| |||||||||| |||||||||| | TCCTTATGAA GATGCTGAGC AACTCAAAAA AGCTTTTAAA G......... .......... 101 CCAGATCCCC TTTGGTTGGA TTTTGTATGC CTGATTTTAG TGCAAGATTT CTTTTCTATA 56157 .......... .......... .......... .......... .......... .......... 101 TTTGCATTTG CTATTTTTCT TGAATGATCA GTTGATTTTT ACTTTTCCTT ACTGTTTTTT 56217 .......... .......... .......... .......... .......... .......... 101 CCTAGTTTAG TTTAGTTTTA GTTCTTGATG GGGTTCTTGT GATCTGAATG ATCTATTCAA 56277 .......... .......... .......... .......... .......... .......... 101 AATTGTTTCG AAATGTAACA TAGACCATCT GCTGACTCTA AATCTTGAAT CTGTCTCGGT 56337 .......... .......... .......... .......... .......... .......... 101 TAGGTAAAAT GCTGTGTGAT TTTTTATTTA ATTCATTGTT GGAGGAAATT AGTGATCTTT 56397 .......... .......... .......... .......... .......... .......... 101 GACTGTAGGC ATATGTAGAA GACATTTTTC TTTATGATTC TGTGTAGTCA TTTCCCAAAC 56457 .......... .......... .......... .......... .......... .......... 101 GTATGATTGG TCTAGATTAT TAATTTGTTG ACAAAAATGA TTAACTCCAA TTCTCCGTGG 56517 .......... .......... .......... .......... .......... .......... 101 TGGTTAGGCT GATTATGATG TATGGGGCGA GTGGAGTGTT GGTTAGTTAA GAATTCTAAT 56577 .......... .......... .......... .......... .......... .......... 101 GTCAAAAGAT ATGAGGTGGC GAAAATGAGG ACGCTGAGGT GGATGTGGAT ATGTAGGAGA 56637 .......... .......... .......... .......... .......... .......... 101 GATAAAGATT AAGAATGAAG ATATCCAACA TAACGTGGGA GTGGCTTCCG TGATGGACAA 56697 .......... .......... .......... .......... .......... .......... 101 GATGAGGGAA GTGAGACTGA GATGGTTTAG ACATGATATG TGAAGAGGAG GTGCACAGCG 56757 .......... .......... .......... .......... .......... .......... 101 ATCTAGGGAG AAATGTTAGA GGTTGGCCGT AGTGAGTTTT AGGAGACGTA GAGGGAAACC 56817 .......... .......... .......... .......... .......... .......... 101 AAAAAAGTGT TGGGAGGGGT GATTAGACAA AACATGACGC AACTTCAGCT TTCCGATGAT 56877 .......... .......... .......... .......... .......... .......... 101 ATGATTCTAG ATTGAAGGTT ATGGAGGTCA CGGATTAGGG TAGAAGGTTA GTAAATAGTT 56937 .......... .......... .......... .......... .......... .......... 101 GAATGTTGTC TCGTTTCCAA GGGGATAGCT TGGTGGTAGT TTTGTTTCAT TGTACCTATT 56997 .......... .......... .......... .......... .......... .......... 101 TCCCCAGTAA TACAAGTAGT AGTAGCATTT TCTCATAGTT GTCTGTCTTG CAATTTTTGT 57057 .......... .......... .......... .......... .......... .......... 101 TGCTCGTTAT TTACTGTGCT TCTGTTATCA CATTAGTTGG TTATTGTTAT TGCTCTTGTT 57117 .......... .......... .......... .......... .......... .......... 101 TTTTGAATGC TCTAGGTTAT GCTTTCCCTT TAATTTTCAA TGTCCTGTTA CTCTGTTGTG 57177 .......... .......... .......... .......... .......... .......... 101 TGTTTTGGGA ACAGCCTATC TACCTCCACG AGGTAGGGTT TAGGTTCCTC CCCAGACCCC 57237 .......... .......... .......... .......... .......... .......... 101 GACTATGGGA CTACATCGAG TTTGCTGTTG TTGTTTGGGC TTGCAAAGCA GGAAGCTGAA 57297 .......... .......... .......... .......... .......... .......... 101 TTTTGTTTTC CACAGAAGAC TCATGGTTAA ACGTTTGCAG GATGGGGCAC AAATGAGGAA 57357 |||||||||| |||||||||| .......... .......... .......... .......... GATGGGGCAC AAATGAGGAA 121 CTTATTATTC AGATTCTGGC TCATAGGAAT GCAGCACAAC GCAAGTTAAT CCGAGATTCT 57417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTATTATTC AGATTCTGGC TCATAGGAAT GCAGCACAAC GCAAGTTAAT CCGAGATTCT 181 TATGCTGCTG CTTATGGAGA GGATCTTCTC AAGGACTTGG ATTCTGAACT GACAAGTGAT 57477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGCTGCTG CTTATGGAGA GGATCTTCTC AAGGACTTGG ATTCTGAACT GACAAGTGAT 241 TTTCAGGTTA ATTAATCTCA ATTTTCCATT CTTGTTCCAA ATTGTGTTGG AGTACACCCC 57537 |||||| TTTCAG.... .......... .......... .......... .......... .......... 247 GTTTAATCAA TCATTGTGGT GTATTGAATG TTTTTCTTTT TGTTCATTTA TACTTTCTTA 57597 .......... .......... .......... .......... .......... .......... 247 GATTTGTCTA GTCCATATCT ACATTATTAA TCACAGGTAA CATTAGCCAA GGATTGCTTT 57657 .......... .......... .......... .......... .......... .......... 247 GACTAATATA TAATTTGATT CACATGATAT TGCAGCGTGT GGTGCTTCTC TGGACTTTGA 57717 ||||| |||||||||| |||||||||| .......... .......... .......... .....CGTGT GGTGCTTCTC TGGACTTTGA 272 GTCCTGCTGA GCGCGACGCC TACTTGGTTA ATGAGGCTAC CAAACGTCTG ACTGCTAGCA 57777 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCTGCTGA GCGCGACGCC TACTTGGTTA ATGAGGCTAC CAAACGTCTG ACTGCTAGCA 332 ATTGGGTTAT CATGGAAATT GCTTGTACCA GGTCTTCTGA TGATCTTTTT AAGGCGAGGC 57837 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGGTTAT CATGGAAATT GCTTGTACCA GGTCTTCTGA TGATCTTTTT AAGGCGAGGC 392 AGGCCTACCA TGCTCGATAC AAGAAATCAC TTGAAGAAGA TGTTGCTTAT CATACAAGTG 57897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCCTACCA TGCTCGATAC AAGAAATCAC TTGAAGAAGA TGTTGCTTAT CATACAAGTG 452 GGGATTTCCG TAAGGTACTT CGCATATAAG ATCTACTGTG CCACATTTAA TTCATTGTTA 57957 |||||||||| |||| GGGATTTCCG TAAG...... .......... .......... .......... .......... 466 TTCTAGTGCC AGTCAACTTT GTCATTAGAT CAGCTGTAGA GAAAAACCTA TAGTCAGCCG 58017 .......... .......... .......... .......... .......... .......... 466 AAGTTTGCTA AAGAATCTGC CACTTTGTTG TTTTCTATAA ATCTATAGAC GATTCTGAAA 58077 .......... .......... .......... .......... .......... .......... 466 TTACTAGCCG AGAATTTGGA TGAAATGAAG CTCCACCATG AGTCTAGGTA TCGGCAATTC 58137 .......... .......... .......... .......... .......... .......... 466 TTGGGGCTTT TTTATTTTCA TTGAAGCGAT TATTTGACTG TTTAGTGATT CGAGAACCAG 58197 .......... .......... .......... .......... .......... .......... 466 AAGATCATTT TGCCTAGTAA AGCTCATCAA CTCTTCTTTT TGCTCGTTGT GACTTCTTAA 58257 .......... .......... .......... .......... .......... .......... 466 GGATGATTCT TTCTACCATG TAAGCTGTTG CACTTGCGCC TATTTGCCAC CTTTGGGGTG 58317 .......... .......... .......... .......... .......... .......... 466 TTTAAGATGA ATGATAAACG GTGACAAGTG ATGGATAGTC TCCGGTTACG ACCATCCACC 58377 .......... .......... .......... .......... .......... .......... 466 TCCAGCCATA ACGTTGGGGG TTAACCTCAC CAAGGGAGCG AAGTGGAGAA GGATCACCGT 58437 .......... .......... .......... .......... .......... .......... 466 TGTTGTGCTC TTGAGCCAGG GGAAACTGAG GTTACGGTTT ACTGTGTCCA AAAAATAAAA 58497 .......... .......... .......... .......... .......... .......... 466 TAAAAGGTTT AAGGATGATA GTGTCTGAGA TAACAGTGTA AATAGTTAGA TAAGCACCTT 58557 .......... .......... .......... .......... .......... .......... 466 AAAGTTAGAT TTTTGTGTTG TCTGTCTTTG TCTCCAGTGA ATACTGAGAA TACATGCAAC 58617 .......... .......... .......... .......... .......... .......... 466 AAATAAATCT TGCAATCACC GTCGTTAAGC TGGTCATATT GTATTAAACT AATTCCCGAA 58677 .......... .......... .......... .......... .......... .......... 466 CAGCTTTTGG TTCCTCTTAT AACTGCATTC AGATATGAAG GAGATGAGGT GAACATGACA 58737 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...CTTTTGG TTCCTCTTAT AACTGCATTC AGATATGAAG GAGATGAGGT GAACATGACA 523 TTAGCAAGAA AGGAAGCAAA TATACTGCAT GAGAAGATCT CTGACAAGGC TTACAATGAC 58797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGCAAGAA AGGAAGCAAA TATACTGCAT GAGAAGATCT CTGACAAGGC TTACAATGAC 583 GAGGAGATCA TCCGAATCAT TTCTACTAGG AGTAAAGCAC AGCTGAGTGC TACGTTCAAC 58857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAGATCA TCCGAATCAT TTCTACTAGG AGTAAAGCAC AGCTGAGTGC TACGTTCAAC 643 CACTACAATG ATCACCATGG CCATGAAATC ATCAAGGTAA AACTCAAACA TTAGAAAGAC 58917 |||||||||| |||||||||| |||||||||| |||||| CACTACAATG ATCACCATGG CCATGAAATC ATCAAG.... .......... .......... 679 TTGAAATTAT GTTAGTTACC ATTGTTTAAA AGGGATCTAT TCATTGTACT GTGTGATGAT 58977 .......... .......... .......... .......... .......... .......... 679 GCAGGATCTG GAAGCTGATG ATGACGATGA GTACCTGAAA CTACTCAGAG CAGCAATAGA 59037 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GATCTG GAAGCTGATG ATGACGATGA GTACCTGAAA CTACTCAGAG CAGCAATAGA 735 ATGCTTGAAA ACCCCAGAGA AACACTTTGA GAAAGTTCTT CGATTGGCTA TCAAGAAGCT 59097 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| ATGCTTGAAA ACCCCAGAGA AACACTTTGA GAAAG-TCTT CGATTGGCTA TCAAGAAGCT 794 GGGTACAGAC GAATGGGATC TTACT 59122 |||||||||| |||||||||| ||||| GGGTACAGAC GAATGGGATC TTACT 819 hqPGS_C04HBa0077O05.1+_SGN-E553891+ (55978 56078,57338 57483,57693 57911,58681 58893,58982 59122) ******************************************************************************** EST sequence 136 +strand 602 n (File: SGN-E310028+) 1 CACATTCTCA AGAAAGGGAA AAAAAATGTC TAGTCTTAAA GTTCCAGCAT CAGTTCCAGA 61 TCCTTATGAA GATGCTGAGC AACTCAAAAA AGCTTTTAAA GGATGGGGCA CAAATGAGGA 121 ACTTATTATT CAGATTCTGG CTCATAGGAA TGCAGCACAA CGCAAGTTAA TCCGAGATTC 181 TTATGCTGCT GCTTATGGAG AGGATCTTCT CAAGGACTTG GATTCTGAAC TGACAAGTGA 241 TTTTCAGCGT GTGGTGCTTC TCTGGACTTT GAGTCCTGCT GAGCGCGACG CCTACTTGGT 301 TAATGAGGCT ACCAAACGTC TGACTGCTAG CAATTGGGTT ATCATGGAAA TTGCTTGTAC 361 CAGGTCTTCT GATGATCTTT TTAAGGCGAG GCAGGCCTAC CATGCTCGAT ACAAGAAATC 421 ACTTGAAGAA GATGTTGCTT ATCATACAAG TGGGGATTTC CGTAAGCTTT TGGTTCCTCT 481 TATAACTGCA TTCAGATATG AAGGAGATGA GGTGAACATG ACATTAGCAA GAAAGGAAGC 541 AAATATACTG CATGAGAAGA TCTCTGACAA GGCTTACAAT GACGAGGAGA TCATCCGAAT 601 CA Predicted gene structure (within gDNA segment 55378 to 59426): Exon 1 55978 56078 ( 101 n); cDNA 1 101 ( 101 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 102 247 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 248 466 ( 219 n); score: 1.000 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 1.00) Exon 4 58681 58816 ( 136 n); cDNA 467 602 ( 136 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E310028+ 1.000 602 1.000 C PGS_C04HBa0077O05.1+_SGN-E310028+ (55978 56078,57338 57483,57693 57911,58681 58816) Alignment (genomic DNA sequence = upper lines): CACATTCTCA AGAAAGGGAA AAAAAATGTC TAGTCTTAAA GTTCCAGCAT CAGTTCCAGA 56037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACATTCTCA AGAAAGGGAA AAAAAATGTC TAGTCTTAAA GTTCCAGCAT CAGTTCCAGA 60 TCCTTATGAA GATGCTGAGC AACTCAAAAA AGCTTTTAAA GGTTTCACTT TTTTTTTCTT 56097 |||||||||| |||||||||| |||||||||| |||||||||| | TCCTTATGAA GATGCTGAGC AACTCAAAAA AGCTTTTAAA G......... .......... 101 CCAGATCCCC TTTGGTTGGA TTTTGTATGC CTGATTTTAG TGCAAGATTT CTTTTCTATA 56157 .......... .......... .......... .......... .......... .......... 101 TTTGCATTTG CTATTTTTCT TGAATGATCA GTTGATTTTT ACTTTTCCTT ACTGTTTTTT 56217 .......... .......... .......... .......... .......... .......... 101 CCTAGTTTAG TTTAGTTTTA GTTCTTGATG GGGTTCTTGT GATCTGAATG ATCTATTCAA 56277 .......... .......... .......... .......... .......... .......... 101 AATTGTTTCG AAATGTAACA TAGACCATCT GCTGACTCTA AATCTTGAAT CTGTCTCGGT 56337 .......... .......... .......... .......... .......... .......... 101 TAGGTAAAAT GCTGTGTGAT TTTTTATTTA ATTCATTGTT GGAGGAAATT AGTGATCTTT 56397 .......... .......... .......... .......... .......... .......... 101 GACTGTAGGC ATATGTAGAA GACATTTTTC TTTATGATTC TGTGTAGTCA TTTCCCAAAC 56457 .......... .......... .......... .......... .......... .......... 101 GTATGATTGG TCTAGATTAT TAATTTGTTG ACAAAAATGA TTAACTCCAA TTCTCCGTGG 56517 .......... .......... .......... .......... .......... .......... 101 TGGTTAGGCT GATTATGATG TATGGGGCGA GTGGAGTGTT GGTTAGTTAA GAATTCTAAT 56577 .......... .......... .......... .......... .......... .......... 101 GTCAAAAGAT ATGAGGTGGC GAAAATGAGG ACGCTGAGGT GGATGTGGAT ATGTAGGAGA 56637 .......... .......... .......... .......... .......... .......... 101 GATAAAGATT AAGAATGAAG ATATCCAACA TAACGTGGGA GTGGCTTCCG TGATGGACAA 56697 .......... .......... .......... .......... .......... .......... 101 GATGAGGGAA GTGAGACTGA GATGGTTTAG ACATGATATG TGAAGAGGAG GTGCACAGCG 56757 .......... .......... .......... .......... .......... .......... 101 ATCTAGGGAG AAATGTTAGA GGTTGGCCGT AGTGAGTTTT AGGAGACGTA GAGGGAAACC 56817 .......... .......... .......... .......... .......... .......... 101 AAAAAAGTGT TGGGAGGGGT GATTAGACAA AACATGACGC AACTTCAGCT TTCCGATGAT 56877 .......... .......... .......... .......... .......... .......... 101 ATGATTCTAG ATTGAAGGTT ATGGAGGTCA CGGATTAGGG TAGAAGGTTA GTAAATAGTT 56937 .......... .......... .......... .......... .......... .......... 101 GAATGTTGTC TCGTTTCCAA GGGGATAGCT TGGTGGTAGT TTTGTTTCAT TGTACCTATT 56997 .......... .......... .......... .......... .......... .......... 101 TCCCCAGTAA TACAAGTAGT AGTAGCATTT TCTCATAGTT GTCTGTCTTG CAATTTTTGT 57057 .......... .......... .......... .......... .......... .......... 101 TGCTCGTTAT TTACTGTGCT TCTGTTATCA CATTAGTTGG TTATTGTTAT TGCTCTTGTT 57117 .......... .......... .......... .......... .......... .......... 101 TTTTGAATGC TCTAGGTTAT GCTTTCCCTT TAATTTTCAA TGTCCTGTTA CTCTGTTGTG 57177 .......... .......... .......... .......... .......... .......... 101 TGTTTTGGGA ACAGCCTATC TACCTCCACG AGGTAGGGTT TAGGTTCCTC CCCAGACCCC 57237 .......... .......... .......... .......... .......... .......... 101 GACTATGGGA CTACATCGAG TTTGCTGTTG TTGTTTGGGC TTGCAAAGCA GGAAGCTGAA 57297 .......... .......... .......... .......... .......... .......... 101 TTTTGTTTTC CACAGAAGAC TCATGGTTAA ACGTTTGCAG GATGGGGCAC AAATGAGGAA 57357 |||||||||| |||||||||| .......... .......... .......... .......... GATGGGGCAC AAATGAGGAA 121 CTTATTATTC AGATTCTGGC TCATAGGAAT GCAGCACAAC GCAAGTTAAT CCGAGATTCT 57417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTATTATTC AGATTCTGGC TCATAGGAAT GCAGCACAAC GCAAGTTAAT CCGAGATTCT 181 TATGCTGCTG CTTATGGAGA GGATCTTCTC AAGGACTTGG ATTCTGAACT GACAAGTGAT 57477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGCTGCTG CTTATGGAGA GGATCTTCTC AAGGACTTGG ATTCTGAACT GACAAGTGAT 241 TTTCAGGTTA ATTAATCTCA ATTTTCCATT CTTGTTCCAA ATTGTGTTGG AGTACACCCC 57537 |||||| TTTCAG.... .......... .......... .......... .......... .......... 247 GTTTAATCAA TCATTGTGGT GTATTGAATG TTTTTCTTTT TGTTCATTTA TACTTTCTTA 57597 .......... .......... .......... .......... .......... .......... 247 GATTTGTCTA GTCCATATCT ACATTATTAA TCACAGGTAA CATTAGCCAA GGATTGCTTT 57657 .......... .......... .......... .......... .......... .......... 247 GACTAATATA TAATTTGATT CACATGATAT TGCAGCGTGT GGTGCTTCTC TGGACTTTGA 57717 ||||| |||||||||| |||||||||| .......... .......... .......... .....CGTGT GGTGCTTCTC TGGACTTTGA 272 GTCCTGCTGA GCGCGACGCC TACTTGGTTA ATGAGGCTAC CAAACGTCTG ACTGCTAGCA 57777 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCTGCTGA GCGCGACGCC TACTTGGTTA ATGAGGCTAC CAAACGTCTG ACTGCTAGCA 332 ATTGGGTTAT CATGGAAATT GCTTGTACCA GGTCTTCTGA TGATCTTTTT AAGGCGAGGC 57837 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGGTTAT CATGGAAATT GCTTGTACCA GGTCTTCTGA TGATCTTTTT AAGGCGAGGC 392 AGGCCTACCA TGCTCGATAC AAGAAATCAC TTGAAGAAGA TGTTGCTTAT CATACAAGTG 57897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCCTACCA TGCTCGATAC AAGAAATCAC TTGAAGAAGA TGTTGCTTAT CATACAAGTG 452 GGGATTTCCG TAAGGTACTT CGCATATAAG ATCTACTGTG CCACATTTAA TTCATTGTTA 57957 |||||||||| |||| GGGATTTCCG TAAG...... .......... .......... .......... .......... 466 TTCTAGTGCC AGTCAACTTT GTCATTAGAT CAGCTGTAGA GAAAAACCTA TAGTCAGCCG 58017 .......... .......... .......... .......... .......... .......... 466 AAGTTTGCTA AAGAATCTGC CACTTTGTTG TTTTCTATAA ATCTATAGAC GATTCTGAAA 58077 .......... .......... .......... .......... .......... .......... 466 TTACTAGCCG AGAATTTGGA TGAAATGAAG CTCCACCATG AGTCTAGGTA TCGGCAATTC 58137 .......... .......... .......... .......... .......... .......... 466 TTGGGGCTTT TTTATTTTCA TTGAAGCGAT TATTTGACTG TTTAGTGATT CGAGAACCAG 58197 .......... .......... .......... .......... .......... .......... 466 AAGATCATTT TGCCTAGTAA AGCTCATCAA CTCTTCTTTT TGCTCGTTGT GACTTCTTAA 58257 .......... .......... .......... .......... .......... .......... 466 GGATGATTCT TTCTACCATG TAAGCTGTTG CACTTGCGCC TATTTGCCAC CTTTGGGGTG 58317 .......... .......... .......... .......... .......... .......... 466 TTTAAGATGA ATGATAAACG GTGACAAGTG ATGGATAGTC TCCGGTTACG ACCATCCACC 58377 .......... .......... .......... .......... .......... .......... 466 TCCAGCCATA ACGTTGGGGG TTAACCTCAC CAAGGGAGCG AAGTGGAGAA GGATCACCGT 58437 .......... .......... .......... .......... .......... .......... 466 TGTTGTGCTC TTGAGCCAGG GGAAACTGAG GTTACGGTTT ACTGTGTCCA AAAAATAAAA 58497 .......... .......... .......... .......... .......... .......... 466 TAAAAGGTTT AAGGATGATA GTGTCTGAGA TAACAGTGTA AATAGTTAGA TAAGCACCTT 58557 .......... .......... .......... .......... .......... .......... 466 AAAGTTAGAT TTTTGTGTTG TCTGTCTTTG TCTCCAGTGA ATACTGAGAA TACATGCAAC 58617 .......... .......... .......... .......... .......... .......... 466 AAATAAATCT TGCAATCACC GTCGTTAAGC TGGTCATATT GTATTAAACT AATTCCCGAA 58677 .......... .......... .......... .......... .......... .......... 466 CAGCTTTTGG TTCCTCTTAT AACTGCATTC AGATATGAAG GAGATGAGGT GAACATGACA 58737 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...CTTTTGG TTCCTCTTAT AACTGCATTC AGATATGAAG GAGATGAGGT GAACATGACA 523 TTAGCAAGAA AGGAAGCAAA TATACTGCAT GAGAAGATCT CTGACAAGGC TTACAATGAC 58797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGCAAGAA AGGAAGCAAA TATACTGCAT GAGAAGATCT CTGACAAGGC TTACAATGAC 583 GAGGAGATCA TCCGAATCA 58816 |||||||||| ||||||||| GAGGAGATCA TCCGAATCA 602 hqPGS_C04HBa0077O05.1+_SGN-E310028+ (55978 56078,57338 57483,57693 57911,58681 58816) ******************************************************************************** EST sequence 10 +strand 509 n (File: SGN-E310247+) 1 CACATTCTCA AGAAAGGGAA AAAAAATGTC TAGTCTTAAA GTTCCAGCAT CAGTTCCAGA 61 TCCTTATGAA GATGCTGAGC AACTCAAAAA AGCTTTTAAA GGATGGGGCA CAAATGAGGA 121 ACTTATTATT CAGATTCTGG CTCATAGGAA TGCAGCACAA CGCAAGTTAA TCCGAGATTC 181 TTATGCTGCT GCTTATGGAG AGGATCTTCT CAAGGACTTG GATTCTGAAC TGACAAGTGA 241 TTTTCAGCGT GTGGTGCTTC TCTGGACTTT GAGTCCTGCT GAGCGCGACG CCTACTTGGT 301 TAATGAGGCT ACCAAACGTC TGACTGCTAG CAATTGGGTT ATCATGGAAA TTGCTTGTAC 361 CAGGTCTTCT GATGATCTTT TTAAGGCGAG GCAGGCCTAC CATGCTCGAT ACAAGAAATC 421 ACTTGAAGAA GATGTTGCTT ATCATACAAG TGGGGATTTC CGTAAGCTTT TGGTTCCTCT 481 TATAACTGCA TTCAGATATG AAGGAGATG Predicted gene structure (within gDNA segment 55378 to 59333): Exon 1 55978 56078 ( 101 n); cDNA 1 101 ( 101 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 102 247 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 248 466 ( 219 n); score: 1.000 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 1.00) Exon 4 58681 58723 ( 43 n); cDNA 467 509 ( 43 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E310247+ 1.000 509 1.000 C PGS_C04HBa0077O05.1+_SGN-E310247+ (55978 56078,57338 57483,57693 57911,58681 58723) Alignment (genomic DNA sequence = upper lines): CACATTCTCA AGAAAGGGAA AAAAAATGTC TAGTCTTAAA GTTCCAGCAT CAGTTCCAGA 56037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACATTCTCA AGAAAGGGAA AAAAAATGTC TAGTCTTAAA GTTCCAGCAT CAGTTCCAGA 60 TCCTTATGAA GATGCTGAGC AACTCAAAAA AGCTTTTAAA GGTTTCACTT TTTTTTTCTT 56097 |||||||||| |||||||||| |||||||||| |||||||||| | TCCTTATGAA GATGCTGAGC AACTCAAAAA AGCTTTTAAA G......... .......... 101 CCAGATCCCC TTTGGTTGGA TTTTGTATGC CTGATTTTAG TGCAAGATTT CTTTTCTATA 56157 .......... .......... .......... .......... .......... .......... 101 TTTGCATTTG CTATTTTTCT TGAATGATCA GTTGATTTTT ACTTTTCCTT ACTGTTTTTT 56217 .......... .......... .......... .......... .......... .......... 101 CCTAGTTTAG TTTAGTTTTA GTTCTTGATG GGGTTCTTGT GATCTGAATG ATCTATTCAA 56277 .......... .......... .......... .......... .......... .......... 101 AATTGTTTCG AAATGTAACA TAGACCATCT GCTGACTCTA AATCTTGAAT CTGTCTCGGT 56337 .......... .......... .......... .......... .......... .......... 101 TAGGTAAAAT GCTGTGTGAT TTTTTATTTA ATTCATTGTT GGAGGAAATT AGTGATCTTT 56397 .......... .......... .......... .......... .......... .......... 101 GACTGTAGGC ATATGTAGAA GACATTTTTC TTTATGATTC TGTGTAGTCA TTTCCCAAAC 56457 .......... .......... .......... .......... .......... .......... 101 GTATGATTGG TCTAGATTAT TAATTTGTTG ACAAAAATGA TTAACTCCAA TTCTCCGTGG 56517 .......... .......... .......... .......... .......... .......... 101 TGGTTAGGCT GATTATGATG TATGGGGCGA GTGGAGTGTT GGTTAGTTAA GAATTCTAAT 56577 .......... .......... .......... .......... .......... .......... 101 GTCAAAAGAT ATGAGGTGGC GAAAATGAGG ACGCTGAGGT GGATGTGGAT ATGTAGGAGA 56637 .......... .......... .......... .......... .......... .......... 101 GATAAAGATT AAGAATGAAG ATATCCAACA TAACGTGGGA GTGGCTTCCG TGATGGACAA 56697 .......... .......... .......... .......... .......... .......... 101 GATGAGGGAA GTGAGACTGA GATGGTTTAG ACATGATATG TGAAGAGGAG GTGCACAGCG 56757 .......... .......... .......... .......... .......... .......... 101 ATCTAGGGAG AAATGTTAGA GGTTGGCCGT AGTGAGTTTT AGGAGACGTA GAGGGAAACC 56817 .......... .......... .......... .......... .......... .......... 101 AAAAAAGTGT TGGGAGGGGT GATTAGACAA AACATGACGC AACTTCAGCT TTCCGATGAT 56877 .......... .......... .......... .......... .......... .......... 101 ATGATTCTAG ATTGAAGGTT ATGGAGGTCA CGGATTAGGG TAGAAGGTTA GTAAATAGTT 56937 .......... .......... .......... .......... .......... .......... 101 GAATGTTGTC TCGTTTCCAA GGGGATAGCT TGGTGGTAGT TTTGTTTCAT TGTACCTATT 56997 .......... .......... .......... .......... .......... .......... 101 TCCCCAGTAA TACAAGTAGT AGTAGCATTT TCTCATAGTT GTCTGTCTTG CAATTTTTGT 57057 .......... .......... .......... .......... .......... .......... 101 TGCTCGTTAT TTACTGTGCT TCTGTTATCA CATTAGTTGG TTATTGTTAT TGCTCTTGTT 57117 .......... .......... .......... .......... .......... .......... 101 TTTTGAATGC TCTAGGTTAT GCTTTCCCTT TAATTTTCAA TGTCCTGTTA CTCTGTTGTG 57177 .......... .......... .......... .......... .......... .......... 101 TGTTTTGGGA ACAGCCTATC TACCTCCACG AGGTAGGGTT TAGGTTCCTC CCCAGACCCC 57237 .......... .......... .......... .......... .......... .......... 101 GACTATGGGA CTACATCGAG TTTGCTGTTG TTGTTTGGGC TTGCAAAGCA GGAAGCTGAA 57297 .......... .......... .......... .......... .......... .......... 101 TTTTGTTTTC CACAGAAGAC TCATGGTTAA ACGTTTGCAG GATGGGGCAC AAATGAGGAA 57357 |||||||||| |||||||||| .......... .......... .......... .......... GATGGGGCAC AAATGAGGAA 121 CTTATTATTC AGATTCTGGC TCATAGGAAT GCAGCACAAC GCAAGTTAAT CCGAGATTCT 57417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTATTATTC AGATTCTGGC TCATAGGAAT GCAGCACAAC GCAAGTTAAT CCGAGATTCT 181 TATGCTGCTG CTTATGGAGA GGATCTTCTC AAGGACTTGG ATTCTGAACT GACAAGTGAT 57477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGCTGCTG CTTATGGAGA GGATCTTCTC AAGGACTTGG ATTCTGAACT GACAAGTGAT 241 TTTCAGGTTA ATTAATCTCA ATTTTCCATT CTTGTTCCAA ATTGTGTTGG AGTACACCCC 57537 |||||| TTTCAG.... .......... .......... .......... .......... .......... 247 GTTTAATCAA TCATTGTGGT GTATTGAATG TTTTTCTTTT TGTTCATTTA TACTTTCTTA 57597 .......... .......... .......... .......... .......... .......... 247 GATTTGTCTA GTCCATATCT ACATTATTAA TCACAGGTAA CATTAGCCAA GGATTGCTTT 57657 .......... .......... .......... .......... .......... .......... 247 GACTAATATA TAATTTGATT CACATGATAT TGCAGCGTGT GGTGCTTCTC TGGACTTTGA 57717 ||||| |||||||||| |||||||||| .......... .......... .......... .....CGTGT GGTGCTTCTC TGGACTTTGA 272 GTCCTGCTGA GCGCGACGCC TACTTGGTTA ATGAGGCTAC CAAACGTCTG ACTGCTAGCA 57777 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCTGCTGA GCGCGACGCC TACTTGGTTA ATGAGGCTAC CAAACGTCTG ACTGCTAGCA 332 ATTGGGTTAT CATGGAAATT GCTTGTACCA GGTCTTCTGA TGATCTTTTT AAGGCGAGGC 57837 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGGTTAT CATGGAAATT GCTTGTACCA GGTCTTCTGA TGATCTTTTT AAGGCGAGGC 392 AGGCCTACCA TGCTCGATAC AAGAAATCAC TTGAAGAAGA TGTTGCTTAT CATACAAGTG 57897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCCTACCA TGCTCGATAC AAGAAATCAC TTGAAGAAGA TGTTGCTTAT CATACAAGTG 452 GGGATTTCCG TAAGGTACTT CGCATATAAG ATCTACTGTG CCACATTTAA TTCATTGTTA 57957 |||||||||| |||| GGGATTTCCG TAAG...... .......... .......... .......... .......... 466 TTCTAGTGCC AGTCAACTTT GTCATTAGAT CAGCTGTAGA GAAAAACCTA TAGTCAGCCG 58017 .......... .......... .......... .......... .......... .......... 466 AAGTTTGCTA AAGAATCTGC CACTTTGTTG TTTTCTATAA ATCTATAGAC GATTCTGAAA 58077 .......... .......... .......... .......... .......... .......... 466 TTACTAGCCG AGAATTTGGA TGAAATGAAG CTCCACCATG AGTCTAGGTA TCGGCAATTC 58137 .......... .......... .......... .......... .......... .......... 466 TTGGGGCTTT TTTATTTTCA TTGAAGCGAT TATTTGACTG TTTAGTGATT CGAGAACCAG 58197 .......... .......... .......... .......... .......... .......... 466 AAGATCATTT TGCCTAGTAA AGCTCATCAA CTCTTCTTTT TGCTCGTTGT GACTTCTTAA 58257 .......... .......... .......... .......... .......... .......... 466 GGATGATTCT TTCTACCATG TAAGCTGTTG CACTTGCGCC TATTTGCCAC CTTTGGGGTG 58317 .......... .......... .......... .......... .......... .......... 466 TTTAAGATGA ATGATAAACG GTGACAAGTG ATGGATAGTC TCCGGTTACG ACCATCCACC 58377 .......... .......... .......... .......... .......... .......... 466 TCCAGCCATA ACGTTGGGGG TTAACCTCAC CAAGGGAGCG AAGTGGAGAA GGATCACCGT 58437 .......... .......... .......... .......... .......... .......... 466 TGTTGTGCTC TTGAGCCAGG GGAAACTGAG GTTACGGTTT ACTGTGTCCA AAAAATAAAA 58497 .......... .......... .......... .......... .......... .......... 466 TAAAAGGTTT AAGGATGATA GTGTCTGAGA TAACAGTGTA AATAGTTAGA TAAGCACCTT 58557 .......... .......... .......... .......... .......... .......... 466 AAAGTTAGAT TTTTGTGTTG TCTGTCTTTG TCTCCAGTGA ATACTGAGAA TACATGCAAC 58617 .......... .......... .......... .......... .......... .......... 466 AAATAAATCT TGCAATCACC GTCGTTAAGC TGGTCATATT GTATTAAACT AATTCCCGAA 58677 .......... .......... .......... .......... .......... .......... 466 CAGCTTTTGG TTCCTCTTAT AACTGCATTC AGATATGAAG GAGATG 58723 ||||||| |||||||||| |||||||||| |||||||||| |||||| ...CTTTTGG TTCCTCTTAT AACTGCATTC AGATATGAAG GAGATG 509 hqPGS_C04HBa0077O05.1+_SGN-E310247+ (55978 56078,57338 57483,57693 57911,58681 58723) ******************************************************************************** EST sequence 141 +strand 524 n (File: SGN-E330376+) 1 ACATTCTCAA GAAAGGGAAA AAAAATGTCT AGTCTTAAAG TTCCAGCATC AGTTCCAGAT 61 CCTTATGAAG ATGCTGAGCA ACTCAAAAAA GCTTTTAAAG GATGGGGCAC AAATGAGGAA 121 CTTATTATTC AGATTCTGGC TCATAGGAAT GCAGCACAAC GCAAGTTAAT CCGAGATTCT 181 TATGCTGCTG CTTATGGAGA GGATCTTCTC AAGGACTTGG ATTCTGAACT GACAAGTGAT 241 TTTCAGCGTG TGGTGCTTCT CTGGACTTTG AGTCCTGCTG AGCGCGACGC CTACTTGGTT 301 AATGAGGCTA CCAAACGTCT GACTGCTAGC AATTGGGTTA TCATGGAAAT TGCTTGTACC 361 AAGTCTTCTG ATGATCTTTT TAAGGCGAGG CAGGCCTACC ATGCTCGATA CAAGAAATCA 421 CTTGAAGAAG ATGTTGCTTA TCATACAAGT GGGGATTTCC GTAAGCTTTT GGTTCCTCTT 481 ATAACTGCAT TCAGATATGA AGGAGATGAG GTGAACATGA CATT Predicted gene structure (within gDNA segment 55379 to 59349): Exon 1 55979 56078 ( 100 n); cDNA 1 100 ( 100 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 101 246 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 247 465 ( 219 n); score: 0.995 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 1.00) Exon 4 58681 58739 ( 59 n); cDNA 466 524 ( 59 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E330376+ 0.998 524 1.000 C PGS_C04HBa0077O05.1+_SGN-E330376+ (55979 56078,57338 57483,57693 57911,58681 58739) Alignment (genomic DNA sequence = upper lines): ACATTCTCAA GAAAGGGAAA AAAAATGTCT AGTCTTAAAG TTCCAGCATC AGTTCCAGAT 56038 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTCTCAA GAAAGGGAAA AAAAATGTCT AGTCTTAAAG TTCCAGCATC AGTTCCAGAT 60 CCTTATGAAG ATGCTGAGCA ACTCAAAAAA GCTTTTAAAG GTTTCACTTT TTTTTTCTTC 56098 |||||||||| |||||||||| |||||||||| |||||||||| CCTTATGAAG ATGCTGAGCA ACTCAAAAAA GCTTTTAAAG .......... .......... 100 CAGATCCCCT TTGGTTGGAT TTTGTATGCC TGATTTTAGT GCAAGATTTC TTTTCTATAT 56158 .......... .......... .......... .......... .......... .......... 100 TTGCATTTGC TATTTTTCTT GAATGATCAG TTGATTTTTA CTTTTCCTTA CTGTTTTTTC 56218 .......... .......... .......... .......... .......... .......... 100 CTAGTTTAGT TTAGTTTTAG TTCTTGATGG GGTTCTTGTG ATCTGAATGA TCTATTCAAA 56278 .......... .......... .......... .......... .......... .......... 100 ATTGTTTCGA AATGTAACAT AGACCATCTG CTGACTCTAA ATCTTGAATC TGTCTCGGTT 56338 .......... .......... .......... .......... .......... .......... 100 AGGTAAAATG CTGTGTGATT TTTTATTTAA TTCATTGTTG GAGGAAATTA GTGATCTTTG 56398 .......... .......... .......... .......... .......... .......... 100 ACTGTAGGCA TATGTAGAAG ACATTTTTCT TTATGATTCT GTGTAGTCAT TTCCCAAACG 56458 .......... .......... .......... .......... .......... .......... 100 TATGATTGGT CTAGATTATT AATTTGTTGA CAAAAATGAT TAACTCCAAT TCTCCGTGGT 56518 .......... .......... .......... .......... .......... .......... 100 GGTTAGGCTG ATTATGATGT ATGGGGCGAG TGGAGTGTTG GTTAGTTAAG AATTCTAATG 56578 .......... .......... .......... .......... .......... .......... 100 TCAAAAGATA TGAGGTGGCG AAAATGAGGA CGCTGAGGTG GATGTGGATA TGTAGGAGAG 56638 .......... .......... .......... .......... .......... .......... 100 ATAAAGATTA AGAATGAAGA TATCCAACAT AACGTGGGAG TGGCTTCCGT GATGGACAAG 56698 .......... .......... .......... .......... .......... .......... 100 ATGAGGGAAG TGAGACTGAG ATGGTTTAGA CATGATATGT GAAGAGGAGG TGCACAGCGA 56758 .......... .......... .......... .......... .......... .......... 100 TCTAGGGAGA AATGTTAGAG GTTGGCCGTA GTGAGTTTTA GGAGACGTAG AGGGAAACCA 56818 .......... .......... .......... .......... .......... .......... 100 AAAAAGTGTT GGGAGGGGTG ATTAGACAAA ACATGACGCA ACTTCAGCTT TCCGATGATA 56878 .......... .......... .......... .......... .......... .......... 100 TGATTCTAGA TTGAAGGTTA TGGAGGTCAC GGATTAGGGT AGAAGGTTAG TAAATAGTTG 56938 .......... .......... .......... .......... .......... .......... 100 AATGTTGTCT CGTTTCCAAG GGGATAGCTT GGTGGTAGTT TTGTTTCATT GTACCTATTT 56998 .......... .......... .......... .......... .......... .......... 100 CCCCAGTAAT ACAAGTAGTA GTAGCATTTT CTCATAGTTG TCTGTCTTGC AATTTTTGTT 57058 .......... .......... .......... .......... .......... .......... 100 GCTCGTTATT TACTGTGCTT CTGTTATCAC ATTAGTTGGT TATTGTTATT GCTCTTGTTT 57118 .......... .......... .......... .......... .......... .......... 100 TTTGAATGCT CTAGGTTATG CTTTCCCTTT AATTTTCAAT GTCCTGTTAC TCTGTTGTGT 57178 .......... .......... .......... .......... .......... .......... 100 GTTTTGGGAA CAGCCTATCT ACCTCCACGA GGTAGGGTTT AGGTTCCTCC CCAGACCCCG 57238 .......... .......... .......... .......... .......... .......... 100 ACTATGGGAC TACATCGAGT TTGCTGTTGT TGTTTGGGCT TGCAAAGCAG GAAGCTGAAT 57298 .......... .......... .......... .......... .......... .......... 100 TTTGTTTTCC ACAGAAGACT CATGGTTAAA CGTTTGCAGG ATGGGGCACA AATGAGGAAC 57358 | |||||||||| |||||||||| .......... .......... .......... .........G ATGGGGCACA AATGAGGAAC 121 TTATTATTCA GATTCTGGCT CATAGGAATG CAGCACAACG CAAGTTAATC CGAGATTCTT 57418 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTATTCA GATTCTGGCT CATAGGAATG CAGCACAACG CAAGTTAATC CGAGATTCTT 181 ATGCTGCTGC TTATGGAGAG GATCTTCTCA AGGACTTGGA TTCTGAACTG ACAAGTGATT 57478 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCTGCTGC TTATGGAGAG GATCTTCTCA AGGACTTGGA TTCTGAACTG ACAAGTGATT 241 TTCAGGTTAA TTAATCTCAA TTTTCCATTC TTGTTCCAAA TTGTGTTGGA GTACACCCCG 57538 ||||| TTCAG..... .......... .......... .......... .......... .......... 246 TTTAATCAAT CATTGTGGTG TATTGAATGT TTTTCTTTTT GTTCATTTAT ACTTTCTTAG 57598 .......... .......... .......... .......... .......... .......... 246 ATTTGTCTAG TCCATATCTA CATTATTAAT CACAGGTAAC ATTAGCCAAG GATTGCTTTG 57658 .......... .......... .......... .......... .......... .......... 246 ACTAATATAT AATTTGATTC ACATGATATT GCAGCGTGTG GTGCTTCTCT GGACTTTGAG 57718 |||||| |||||||||| |||||||||| .......... .......... .......... ....CGTGTG GTGCTTCTCT GGACTTTGAG 272 TCCTGCTGAG CGCGACGCCT ACTTGGTTAA TGAGGCTACC AAACGTCTGA CTGCTAGCAA 57778 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTGCTGAG CGCGACGCCT ACTTGGTTAA TGAGGCTACC AAACGTCTGA CTGCTAGCAA 332 TTGGGTTATC ATGGAAATTG CTTGTACCAG GTCTTCTGAT GATCTTTTTA AGGCGAGGCA 57838 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TTGGGTTATC ATGGAAATTG CTTGTACCAA GTCTTCTGAT GATCTTTTTA AGGCGAGGCA 392 GGCCTACCAT GCTCGATACA AGAAATCACT TGAAGAAGAT GTTGCTTATC ATACAAGTGG 57898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCTACCAT GCTCGATACA AGAAATCACT TGAAGAAGAT GTTGCTTATC ATACAAGTGG 452 GGATTTCCGT AAGGTACTTC GCATATAAGA TCTACTGTGC CACATTTAAT TCATTGTTAT 57958 |||||||||| ||| GGATTTCCGT AAG....... .......... .......... .......... .......... 465 TCTAGTGCCA GTCAACTTTG TCATTAGATC AGCTGTAGAG AAAAACCTAT AGTCAGCCGA 58018 .......... .......... .......... .......... .......... .......... 465 AGTTTGCTAA AGAATCTGCC ACTTTGTTGT TTTCTATAAA TCTATAGACG ATTCTGAAAT 58078 .......... .......... .......... .......... .......... .......... 465 TACTAGCCGA GAATTTGGAT GAAATGAAGC TCCACCATGA GTCTAGGTAT CGGCAATTCT 58138 .......... .......... .......... .......... .......... .......... 465 TGGGGCTTTT TTATTTTCAT TGAAGCGATT ATTTGACTGT TTAGTGATTC GAGAACCAGA 58198 .......... .......... .......... .......... .......... .......... 465 AGATCATTTT GCCTAGTAAA GCTCATCAAC TCTTCTTTTT GCTCGTTGTG ACTTCTTAAG 58258 .......... .......... .......... .......... .......... .......... 465 GATGATTCTT TCTACCATGT AAGCTGTTGC ACTTGCGCCT ATTTGCCACC TTTGGGGTGT 58318 .......... .......... .......... .......... .......... .......... 465 TTAAGATGAA TGATAAACGG TGACAAGTGA TGGATAGTCT CCGGTTACGA CCATCCACCT 58378 .......... .......... .......... .......... .......... .......... 465 CCAGCCATAA CGTTGGGGGT TAACCTCACC AAGGGAGCGA AGTGGAGAAG GATCACCGTT 58438 .......... .......... .......... .......... .......... .......... 465 GTTGTGCTCT TGAGCCAGGG GAAACTGAGG TTACGGTTTA CTGTGTCCAA AAAATAAAAT 58498 .......... .......... .......... .......... .......... .......... 465 AAAAGGTTTA AGGATGATAG TGTCTGAGAT AACAGTGTAA ATAGTTAGAT AAGCACCTTA 58558 .......... .......... .......... .......... .......... .......... 465 AAGTTAGATT TTTGTGTTGT CTGTCTTTGT CTCCAGTGAA TACTGAGAAT ACATGCAACA 58618 .......... .......... .......... .......... .......... .......... 465 AATAAATCTT GCAATCACCG TCGTTAAGCT GGTCATATTG TATTAAACTA ATTCCCGAAC 58678 .......... .......... .......... .......... .......... .......... 465 AGCTTTTGGT TCCTCTTATA ACTGCATTCA GATATGAAGG AGATGAGGTG AACATGACAT 58738 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..CTTTTGGT TCCTCTTATA ACTGCATTCA GATATGAAGG AGATGAGGTG AACATGACAT 523 T 58739 | T 524 hqPGS_C04HBa0077O05.1+_SGN-E330376+ (55979 56078,57338 57483,57693 57911,58681 58739) ******************************************************************************** EST sequence 23 +strand 421 n (File: SGN-E338047+) 1 ATTCTCAAGA AAGGGAAAAA AAATGTCTAG TCTTAAAGTT CCAGCATCAG TTCCAGATCC 61 TTATGAAGAT GCTGAGCAAC TCAAAAAAGC TTTTAAAGGA TGGGGCACAA ATGAGGAACT 121 TATTATTCAG ATTCTGGCTC ATAGGAATGC AGCACAACGC AAGTTAATCC GAGATTCTTA 181 TGCTGCTGCT TATGGAGAGG ATCTTCTCAA GGACTTGGAT TCTGAACTGA CAAGTGATTT 241 TCAGCGTGTG GTGCTTCTCT GGACTTTGAG TCCTGCTGAG CGCGACGCCT ACTTGGTTAA 301 TGAGGCTACC AAACGTCTGA CTGCTAGCAA TTGGGTTATC ATGGAAATTG CTTGTACCAG 361 GTCTTCTGAT GATCTTTTTA AGGCGAGGCA GGCCTACCAT GCTCGATACA AGAAATCACT 421 T Predicted gene structure (within gDNA segment 55381 to 58479): Exon 1 55981 56078 ( 98 n); cDNA 1 98 ( 98 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 99 244 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57869 ( 177 n); cDNA 245 421 ( 177 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E338047+ 1.000 421 1.000 C PGS_C04HBa0077O05.1+_SGN-E338047+ (55981 56078,57338 57483,57693 57869) Alignment (genomic DNA sequence = upper lines): ATTCTCAAGA AAGGGAAAAA AAATGTCTAG TCTTAAAGTT CCAGCATCAG TTCCAGATCC 56040 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCTCAAGA AAGGGAAAAA AAATGTCTAG TCTTAAAGTT CCAGCATCAG TTCCAGATCC 60 TTATGAAGAT GCTGAGCAAC TCAAAAAAGC TTTTAAAGGT TTCACTTTTT TTTTCTTCCA 56100 |||||||||| |||||||||| |||||||||| |||||||| TTATGAAGAT GCTGAGCAAC TCAAAAAAGC TTTTAAAG.. .......... .......... 98 GATCCCCTTT GGTTGGATTT TGTATGCCTG ATTTTAGTGC AAGATTTCTT TTCTATATTT 56160 .......... .......... .......... .......... .......... .......... 98 GCATTTGCTA TTTTTCTTGA ATGATCAGTT GATTTTTACT TTTCCTTACT GTTTTTTCCT 56220 .......... .......... .......... .......... .......... .......... 98 AGTTTAGTTT AGTTTTAGTT CTTGATGGGG TTCTTGTGAT CTGAATGATC TATTCAAAAT 56280 .......... .......... .......... .......... .......... .......... 98 TGTTTCGAAA TGTAACATAG ACCATCTGCT GACTCTAAAT CTTGAATCTG TCTCGGTTAG 56340 .......... .......... .......... .......... .......... .......... 98 GTAAAATGCT GTGTGATTTT TTATTTAATT CATTGTTGGA GGAAATTAGT GATCTTTGAC 56400 .......... .......... .......... .......... .......... .......... 98 TGTAGGCATA TGTAGAAGAC ATTTTTCTTT ATGATTCTGT GTAGTCATTT CCCAAACGTA 56460 .......... .......... .......... .......... .......... .......... 98 TGATTGGTCT AGATTATTAA TTTGTTGACA AAAATGATTA ACTCCAATTC TCCGTGGTGG 56520 .......... .......... .......... .......... .......... .......... 98 TTAGGCTGAT TATGATGTAT GGGGCGAGTG GAGTGTTGGT TAGTTAAGAA TTCTAATGTC 56580 .......... .......... .......... .......... .......... .......... 98 AAAAGATATG AGGTGGCGAA AATGAGGACG CTGAGGTGGA TGTGGATATG TAGGAGAGAT 56640 .......... .......... .......... .......... .......... .......... 98 AAAGATTAAG AATGAAGATA TCCAACATAA CGTGGGAGTG GCTTCCGTGA TGGACAAGAT 56700 .......... .......... .......... .......... .......... .......... 98 GAGGGAAGTG AGACTGAGAT GGTTTAGACA TGATATGTGA AGAGGAGGTG CACAGCGATC 56760 .......... .......... .......... .......... .......... .......... 98 TAGGGAGAAA TGTTAGAGGT TGGCCGTAGT GAGTTTTAGG AGACGTAGAG GGAAACCAAA 56820 .......... .......... .......... .......... .......... .......... 98 AAAGTGTTGG GAGGGGTGAT TAGACAAAAC ATGACGCAAC TTCAGCTTTC CGATGATATG 56880 .......... .......... .......... .......... .......... .......... 98 ATTCTAGATT GAAGGTTATG GAGGTCACGG ATTAGGGTAG AAGGTTAGTA AATAGTTGAA 56940 .......... .......... .......... .......... .......... .......... 98 TGTTGTCTCG TTTCCAAGGG GATAGCTTGG TGGTAGTTTT GTTTCATTGT ACCTATTTCC 57000 .......... .......... .......... .......... .......... .......... 98 CCAGTAATAC AAGTAGTAGT AGCATTTTCT CATAGTTGTC TGTCTTGCAA TTTTTGTTGC 57060 .......... .......... .......... .......... .......... .......... 98 TCGTTATTTA CTGTGCTTCT GTTATCACAT TAGTTGGTTA TTGTTATTGC TCTTGTTTTT 57120 .......... .......... .......... .......... .......... .......... 98 TGAATGCTCT AGGTTATGCT TTCCCTTTAA TTTTCAATGT CCTGTTACTC TGTTGTGTGT 57180 .......... .......... .......... .......... .......... .......... 98 TTTGGGAACA GCCTATCTAC CTCCACGAGG TAGGGTTTAG GTTCCTCCCC AGACCCCGAC 57240 .......... .......... .......... .......... .......... .......... 98 TATGGGACTA CATCGAGTTT GCTGTTGTTG TTTGGGCTTG CAAAGCAGGA AGCTGAATTT 57300 .......... .......... .......... .......... .......... .......... 98 TGTTTTCCAC AGAAGACTCA TGGTTAAACG TTTGCAGGAT GGGGCACAAA TGAGGAACTT 57360 ||| |||||||||| |||||||||| .......... .......... .......... .......GAT GGGGCACAAA TGAGGAACTT 121 ATTATTCAGA TTCTGGCTCA TAGGAATGCA GCACAACGCA AGTTAATCCG AGATTCTTAT 57420 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATTCAGA TTCTGGCTCA TAGGAATGCA GCACAACGCA AGTTAATCCG AGATTCTTAT 181 GCTGCTGCTT ATGGAGAGGA TCTTCTCAAG GACTTGGATT CTGAACTGAC AAGTGATTTT 57480 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGCTGCTT ATGGAGAGGA TCTTCTCAAG GACTTGGATT CTGAACTGAC AAGTGATTTT 241 CAGGTTAATT AATCTCAATT TTCCATTCTT GTTCCAAATT GTGTTGGAGT ACACCCCGTT 57540 ||| CAG....... .......... .......... .......... .......... .......... 244 TAATCAATCA TTGTGGTGTA TTGAATGTTT TTCTTTTTGT TCATTTATAC TTTCTTAGAT 57600 .......... .......... .......... .......... .......... .......... 244 TTGTCTAGTC CATATCTACA TTATTAATCA CAGGTAACAT TAGCCAAGGA TTGCTTTGAC 57660 .......... .......... .......... .......... .......... .......... 244 TAATATATAA TTTGATTCAC ATGATATTGC AGCGTGTGGT GCTTCTCTGG ACTTTGAGTC 57720 |||||||| |||||||||| |||||||||| .......... .......... .......... ..CGTGTGGT GCTTCTCTGG ACTTTGAGTC 272 CTGCTGAGCG CGACGCCTAC TTGGTTAATG AGGCTACCAA ACGTCTGACT GCTAGCAATT 57780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTGAGCG CGACGCCTAC TTGGTTAATG AGGCTACCAA ACGTCTGACT GCTAGCAATT 332 GGGTTATCAT GGAAATTGCT TGTACCAGGT CTTCTGATGA TCTTTTTAAG GCGAGGCAGG 57840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTTATCAT GGAAATTGCT TGTACCAGGT CTTCTGATGA TCTTTTTAAG GCGAGGCAGG 392 CCTACCATGC TCGATACAAG AAATCACTT 57869 |||||||||| |||||||||| ||||||||| CCTACCATGC TCGATACAAG AAATCACTT 421 hqPGS_C04HBa0077O05.1+_SGN-E338047+ (55981 56078,57338 57483,57693 57869) ******************************************************************************** EST sequence 54 +strand 605 n (File: SGN-E306201+) 1 TTCTCAAGAA AGGGAAAAAA AATGTCTAGT CTTAAAGTTC CAGCATCAGT TCCAGATCCT 61 TATGAAGATG CTGAGCAACT CAAAAAAGCT TTTAAAGGAT GGGGCACAAA TGAGGAACTT 121 ATTATTCAGA TTCTGGCTCA TAGGAATGCA GCACAACGCA AGTTAATCCG AGATTCTTAT 181 GCTGCTGCTT ATGGAGAGGA TCTTCTCAAG GACTTGGATT CTGAACTGAC AAGTGATTTT 241 CAGCGTGTGG TGCTTCTCTG GACTTTGAGT CCTGCTGAGC GCGACGCCTA CTTGGTTAAT 301 GAGGCTACCA AACGTCTGAC TGCTAGCAAT TGGGTTATCA TGGAAATTGC TTGTACCAGG 361 TCTTCTGATG ATCTTTTTAA GGCGAGGCAG GCCTACCATG CTCGATACAA GAAATCACTT 421 GAAGAAGATG TTGCTTATCA TACAAGTGGG GATTTCCGTA AGCTTTTGGT TCCTCTTATA 481 ACTGCATTCA GATATGAAGG AGATGAGGTG AACATGACAT TAGCAAGAAA GGAAGCAAAT 541 ATACTGCATG AGAAGATCTC TGACAAGGCT TACAATGACG AGGAGATCAT CCGAATCATT 601 TCTAC Predicted gene structure (within gDNA segment 55382 to 59433): Exon 1 55982 56078 ( 97 n); cDNA 1 97 ( 97 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 98 243 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 244 462 ( 219 n); score: 1.000 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 1.00) Exon 4 58681 58823 ( 143 n); cDNA 463 605 ( 143 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E306201+ 1.000 605 1.000 C PGS_C04HBa0077O05.1+_SGN-E306201+ (55982 56078,57338 57483,57693 57911,58681 58823) Alignment (genomic DNA sequence = upper lines): TTCTCAAGAA AGGGAAAAAA AATGTCTAGT CTTAAAGTTC CAGCATCAGT TCCAGATCCT 56041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCAAGAA AGGGAAAAAA AATGTCTAGT CTTAAAGTTC CAGCATCAGT TCCAGATCCT 60 TATGAAGATG CTGAGCAACT CAAAAAAGCT TTTAAAGGTT TCACTTTTTT TTTCTTCCAG 56101 |||||||||| |||||||||| |||||||||| ||||||| TATGAAGATG CTGAGCAACT CAAAAAAGCT TTTAAAG... .......... .......... 97 ATCCCCTTTG GTTGGATTTT GTATGCCTGA TTTTAGTGCA AGATTTCTTT TCTATATTTG 56161 .......... .......... .......... .......... .......... .......... 97 CATTTGCTAT TTTTCTTGAA TGATCAGTTG ATTTTTACTT TTCCTTACTG TTTTTTCCTA 56221 .......... .......... .......... .......... .......... .......... 97 GTTTAGTTTA GTTTTAGTTC TTGATGGGGT TCTTGTGATC TGAATGATCT ATTCAAAATT 56281 .......... .......... .......... .......... .......... .......... 97 GTTTCGAAAT GTAACATAGA CCATCTGCTG ACTCTAAATC TTGAATCTGT CTCGGTTAGG 56341 .......... .......... .......... .......... .......... .......... 97 TAAAATGCTG TGTGATTTTT TATTTAATTC ATTGTTGGAG GAAATTAGTG ATCTTTGACT 56401 .......... .......... .......... .......... .......... .......... 97 GTAGGCATAT GTAGAAGACA TTTTTCTTTA TGATTCTGTG TAGTCATTTC CCAAACGTAT 56461 .......... .......... .......... .......... .......... .......... 97 GATTGGTCTA GATTATTAAT TTGTTGACAA AAATGATTAA CTCCAATTCT CCGTGGTGGT 56521 .......... .......... .......... .......... .......... .......... 97 TAGGCTGATT ATGATGTATG GGGCGAGTGG AGTGTTGGTT AGTTAAGAAT TCTAATGTCA 56581 .......... .......... .......... .......... .......... .......... 97 AAAGATATGA GGTGGCGAAA ATGAGGACGC TGAGGTGGAT GTGGATATGT AGGAGAGATA 56641 .......... .......... .......... .......... .......... .......... 97 AAGATTAAGA ATGAAGATAT CCAACATAAC GTGGGAGTGG CTTCCGTGAT GGACAAGATG 56701 .......... .......... .......... .......... .......... .......... 97 AGGGAAGTGA GACTGAGATG GTTTAGACAT GATATGTGAA GAGGAGGTGC ACAGCGATCT 56761 .......... .......... .......... .......... .......... .......... 97 AGGGAGAAAT GTTAGAGGTT GGCCGTAGTG AGTTTTAGGA GACGTAGAGG GAAACCAAAA 56821 .......... .......... .......... .......... .......... .......... 97 AAGTGTTGGG AGGGGTGATT AGACAAAACA TGACGCAACT TCAGCTTTCC GATGATATGA 56881 .......... .......... .......... .......... .......... .......... 97 TTCTAGATTG AAGGTTATGG AGGTCACGGA TTAGGGTAGA AGGTTAGTAA ATAGTTGAAT 56941 .......... .......... .......... .......... .......... .......... 97 GTTGTCTCGT TTCCAAGGGG ATAGCTTGGT GGTAGTTTTG TTTCATTGTA CCTATTTCCC 57001 .......... .......... .......... .......... .......... .......... 97 CAGTAATACA AGTAGTAGTA GCATTTTCTC ATAGTTGTCT GTCTTGCAAT TTTTGTTGCT 57061 .......... .......... .......... .......... .......... .......... 97 CGTTATTTAC TGTGCTTCTG TTATCACATT AGTTGGTTAT TGTTATTGCT CTTGTTTTTT 57121 .......... .......... .......... .......... .......... .......... 97 GAATGCTCTA GGTTATGCTT TCCCTTTAAT TTTCAATGTC CTGTTACTCT GTTGTGTGTT 57181 .......... .......... .......... .......... .......... .......... 97 TTGGGAACAG CCTATCTACC TCCACGAGGT AGGGTTTAGG TTCCTCCCCA GACCCCGACT 57241 .......... .......... .......... .......... .......... .......... 97 ATGGGACTAC ATCGAGTTTG CTGTTGTTGT TTGGGCTTGC AAAGCAGGAA GCTGAATTTT 57301 .......... .......... .......... .......... .......... .......... 97 GTTTTCCACA GAAGACTCAT GGTTAAACGT TTGCAGGATG GGGCACAAAT GAGGAACTTA 57361 |||| |||||||||| |||||||||| .......... .......... .......... ......GATG GGGCACAAAT GAGGAACTTA 121 TTATTCAGAT TCTGGCTCAT AGGAATGCAG CACAACGCAA GTTAATCCGA GATTCTTATG 57421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTCAGAT TCTGGCTCAT AGGAATGCAG CACAACGCAA GTTAATCCGA GATTCTTATG 181 CTGCTGCTTA TGGAGAGGAT CTTCTCAAGG ACTTGGATTC TGAACTGACA AGTGATTTTC 57481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTGCTTA TGGAGAGGAT CTTCTCAAGG ACTTGGATTC TGAACTGACA AGTGATTTTC 241 AGGTTAATTA ATCTCAATTT TCCATTCTTG TTCCAAATTG TGTTGGAGTA CACCCCGTTT 57541 || AG........ .......... .......... .......... .......... .......... 243 AATCAATCAT TGTGGTGTAT TGAATGTTTT TCTTTTTGTT CATTTATACT TTCTTAGATT 57601 .......... .......... .......... .......... .......... .......... 243 TGTCTAGTCC ATATCTACAT TATTAATCAC AGGTAACATT AGCCAAGGAT TGCTTTGACT 57661 .......... .......... .......... .......... .......... .......... 243 AATATATAAT TTGATTCACA TGATATTGCA GCGTGTGGTG CTTCTCTGGA CTTTGAGTCC 57721 ||||||||| |||||||||| |||||||||| .......... .......... .......... .CGTGTGGTG CTTCTCTGGA CTTTGAGTCC 272 TGCTGAGCGC GACGCCTACT TGGTTAATGA GGCTACCAAA CGTCTGACTG CTAGCAATTG 57781 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGCGC GACGCCTACT TGGTTAATGA GGCTACCAAA CGTCTGACTG CTAGCAATTG 332 GGTTATCATG GAAATTGCTT GTACCAGGTC TTCTGATGAT CTTTTTAAGG CGAGGCAGGC 57841 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTATCATG GAAATTGCTT GTACCAGGTC TTCTGATGAT CTTTTTAAGG CGAGGCAGGC 392 CTACCATGCT CGATACAAGA AATCACTTGA AGAAGATGTT GCTTATCATA CAAGTGGGGA 57901 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACCATGCT CGATACAAGA AATCACTTGA AGAAGATGTT GCTTATCATA CAAGTGGGGA 452 TTTCCGTAAG GTACTTCGCA TATAAGATCT ACTGTGCCAC ATTTAATTCA TTGTTATTCT 57961 |||||||||| TTTCCGTAAG .......... .......... .......... .......... .......... 462 AGTGCCAGTC AACTTTGTCA TTAGATCAGC TGTAGAGAAA AACCTATAGT CAGCCGAAGT 58021 .......... .......... .......... .......... .......... .......... 462 TTGCTAAAGA ATCTGCCACT TTGTTGTTTT CTATAAATCT ATAGACGATT CTGAAATTAC 58081 .......... .......... .......... .......... .......... .......... 462 TAGCCGAGAA TTTGGATGAA ATGAAGCTCC ACCATGAGTC TAGGTATCGG CAATTCTTGG 58141 .......... .......... .......... .......... .......... .......... 462 GGCTTTTTTA TTTTCATTGA AGCGATTATT TGACTGTTTA GTGATTCGAG AACCAGAAGA 58201 .......... .......... .......... .......... .......... .......... 462 TCATTTTGCC TAGTAAAGCT CATCAACTCT TCTTTTTGCT CGTTGTGACT TCTTAAGGAT 58261 .......... .......... .......... .......... .......... .......... 462 GATTCTTTCT ACCATGTAAG CTGTTGCACT TGCGCCTATT TGCCACCTTT GGGGTGTTTA 58321 .......... .......... .......... .......... .......... .......... 462 AGATGAATGA TAAACGGTGA CAAGTGATGG ATAGTCTCCG GTTACGACCA TCCACCTCCA 58381 .......... .......... .......... .......... .......... .......... 462 GCCATAACGT TGGGGGTTAA CCTCACCAAG GGAGCGAAGT GGAGAAGGAT CACCGTTGTT 58441 .......... .......... .......... .......... .......... .......... 462 GTGCTCTTGA GCCAGGGGAA ACTGAGGTTA CGGTTTACTG TGTCCAAAAA ATAAAATAAA 58501 .......... .......... .......... .......... .......... .......... 462 AGGTTTAAGG ATGATAGTGT CTGAGATAAC AGTGTAAATA GTTAGATAAG CACCTTAAAG 58561 .......... .......... .......... .......... .......... .......... 462 TTAGATTTTT GTGTTGTCTG TCTTTGTCTC CAGTGAATAC TGAGAATACA TGCAACAAAT 58621 .......... .......... .......... .......... .......... .......... 462 AAATCTTGCA ATCACCGTCG TTAAGCTGGT CATATTGTAT TAAACTAATT CCCGAACAGC 58681 | .......... .......... .......... .......... .......... .........C 463 TTTTGGTTCC TCTTATAACT GCATTCAGAT ATGAAGGAGA TGAGGTGAAC ATGACATTAG 58741 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGGTTCC TCTTATAACT GCATTCAGAT ATGAAGGAGA TGAGGTGAAC ATGACATTAG 523 CAAGAAAGGA AGCAAATATA CTGCATGAGA AGATCTCTGA CAAGGCTTAC AATGACGAGG 58801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGAAAGGA AGCAAATATA CTGCATGAGA AGATCTCTGA CAAGGCTTAC AATGACGAGG 583 AGATCATCCG AATCATTTCT AC 58823 |||||||||| |||||||||| || AGATCATCCG AATCATTTCT AC 605 hqPGS_C04HBa0077O05.1+_SGN-E306201+ (55982 56078,57338 57483,57693 57911,58681 58823) ******************************************************************************** EST sequence 40 +strand 520 n (File: SGN-E341290+) 1 TTCTCAAGAA AGGGAAAAAA AATGTCTAGT CTTAAAGTTC CAGCATCAGT TCCAGATCCT 61 TATGAAGATG CTGAGCAACT CAAAAAAGCT TTTAAAGGAT GGGGCACAAA TGAGGAACTT 121 ATTATTCAGA TTCTGGCTCA TAGGAATGCA GCACAACGCA AGTTAATCCG AGATTCTTAT 181 GCTGCTGCTT ATGGAGAGGA TCTTCTCAAG GACTTGGATT CTGAACTGAC AAGTGATTTT 241 CAGCGTGTGG TGCTTCTCTG GACTTTGAGT CCTGCTGAGC GCGACGCCTA CTTGGTTAAT 301 GAGGCTACCA AACGTCTGAC TGCTAGCAAT TGGGTTATCA TGGAAATTGC TTGTACCAGG 361 TCTTCTGATG ATCTTTTTAA GGCGAGGCAG GCCTACCATG CTCGATACAA GAAATCACTT 421 GAAGAAGATG TTGCTTATCA TACAAGTGGG GATTTCCGTA AGCTTTTGGT TCCTCTTATA 481 ACTGCATTCA GATATGAAGG AGATGAGGTG AACATGACAT Predicted gene structure (within gDNA segment 55382 to 59348): Exon 1 55982 56078 ( 97 n); cDNA 1 97 ( 97 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 98 243 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 244 462 ( 219 n); score: 1.000 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 1.00) Exon 4 58681 58738 ( 58 n); cDNA 463 520 ( 58 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E341290+ 1.000 520 1.000 C PGS_C04HBa0077O05.1+_SGN-E341290+ (55982 56078,57338 57483,57693 57911,58681 58738) Alignment (genomic DNA sequence = upper lines): TTCTCAAGAA AGGGAAAAAA AATGTCTAGT CTTAAAGTTC CAGCATCAGT TCCAGATCCT 56041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCAAGAA AGGGAAAAAA AATGTCTAGT CTTAAAGTTC CAGCATCAGT TCCAGATCCT 60 TATGAAGATG CTGAGCAACT CAAAAAAGCT TTTAAAGGTT TCACTTTTTT TTTCTTCCAG 56101 |||||||||| |||||||||| |||||||||| ||||||| TATGAAGATG CTGAGCAACT CAAAAAAGCT TTTAAAG... .......... .......... 97 ATCCCCTTTG GTTGGATTTT GTATGCCTGA TTTTAGTGCA AGATTTCTTT TCTATATTTG 56161 .......... .......... .......... .......... .......... .......... 97 CATTTGCTAT TTTTCTTGAA TGATCAGTTG ATTTTTACTT TTCCTTACTG TTTTTTCCTA 56221 .......... .......... .......... .......... .......... .......... 97 GTTTAGTTTA GTTTTAGTTC TTGATGGGGT TCTTGTGATC TGAATGATCT ATTCAAAATT 56281 .......... .......... .......... .......... .......... .......... 97 GTTTCGAAAT GTAACATAGA CCATCTGCTG ACTCTAAATC TTGAATCTGT CTCGGTTAGG 56341 .......... .......... .......... .......... .......... .......... 97 TAAAATGCTG TGTGATTTTT TATTTAATTC ATTGTTGGAG GAAATTAGTG ATCTTTGACT 56401 .......... .......... .......... .......... .......... .......... 97 GTAGGCATAT GTAGAAGACA TTTTTCTTTA TGATTCTGTG TAGTCATTTC CCAAACGTAT 56461 .......... .......... .......... .......... .......... .......... 97 GATTGGTCTA GATTATTAAT TTGTTGACAA AAATGATTAA CTCCAATTCT CCGTGGTGGT 56521 .......... .......... .......... .......... .......... .......... 97 TAGGCTGATT ATGATGTATG GGGCGAGTGG AGTGTTGGTT AGTTAAGAAT TCTAATGTCA 56581 .......... .......... .......... .......... .......... .......... 97 AAAGATATGA GGTGGCGAAA ATGAGGACGC TGAGGTGGAT GTGGATATGT AGGAGAGATA 56641 .......... .......... .......... .......... .......... .......... 97 AAGATTAAGA ATGAAGATAT CCAACATAAC GTGGGAGTGG CTTCCGTGAT GGACAAGATG 56701 .......... .......... .......... .......... .......... .......... 97 AGGGAAGTGA GACTGAGATG GTTTAGACAT GATATGTGAA GAGGAGGTGC ACAGCGATCT 56761 .......... .......... .......... .......... .......... .......... 97 AGGGAGAAAT GTTAGAGGTT GGCCGTAGTG AGTTTTAGGA GACGTAGAGG GAAACCAAAA 56821 .......... .......... .......... .......... .......... .......... 97 AAGTGTTGGG AGGGGTGATT AGACAAAACA TGACGCAACT TCAGCTTTCC GATGATATGA 56881 .......... .......... .......... .......... .......... .......... 97 TTCTAGATTG AAGGTTATGG AGGTCACGGA TTAGGGTAGA AGGTTAGTAA ATAGTTGAAT 56941 .......... .......... .......... .......... .......... .......... 97 GTTGTCTCGT TTCCAAGGGG ATAGCTTGGT GGTAGTTTTG TTTCATTGTA CCTATTTCCC 57001 .......... .......... .......... .......... .......... .......... 97 CAGTAATACA AGTAGTAGTA GCATTTTCTC ATAGTTGTCT GTCTTGCAAT TTTTGTTGCT 57061 .......... .......... .......... .......... .......... .......... 97 CGTTATTTAC TGTGCTTCTG TTATCACATT AGTTGGTTAT TGTTATTGCT CTTGTTTTTT 57121 .......... .......... .......... .......... .......... .......... 97 GAATGCTCTA GGTTATGCTT TCCCTTTAAT TTTCAATGTC CTGTTACTCT GTTGTGTGTT 57181 .......... .......... .......... .......... .......... .......... 97 TTGGGAACAG CCTATCTACC TCCACGAGGT AGGGTTTAGG TTCCTCCCCA GACCCCGACT 57241 .......... .......... .......... .......... .......... .......... 97 ATGGGACTAC ATCGAGTTTG CTGTTGTTGT TTGGGCTTGC AAAGCAGGAA GCTGAATTTT 57301 .......... .......... .......... .......... .......... .......... 97 GTTTTCCACA GAAGACTCAT GGTTAAACGT TTGCAGGATG GGGCACAAAT GAGGAACTTA 57361 |||| |||||||||| |||||||||| .......... .......... .......... ......GATG GGGCACAAAT GAGGAACTTA 121 TTATTCAGAT TCTGGCTCAT AGGAATGCAG CACAACGCAA GTTAATCCGA GATTCTTATG 57421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTCAGAT TCTGGCTCAT AGGAATGCAG CACAACGCAA GTTAATCCGA GATTCTTATG 181 CTGCTGCTTA TGGAGAGGAT CTTCTCAAGG ACTTGGATTC TGAACTGACA AGTGATTTTC 57481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTGCTTA TGGAGAGGAT CTTCTCAAGG ACTTGGATTC TGAACTGACA AGTGATTTTC 241 AGGTTAATTA ATCTCAATTT TCCATTCTTG TTCCAAATTG TGTTGGAGTA CACCCCGTTT 57541 || AG........ .......... .......... .......... .......... .......... 243 AATCAATCAT TGTGGTGTAT TGAATGTTTT TCTTTTTGTT CATTTATACT TTCTTAGATT 57601 .......... .......... .......... .......... .......... .......... 243 TGTCTAGTCC ATATCTACAT TATTAATCAC AGGTAACATT AGCCAAGGAT TGCTTTGACT 57661 .......... .......... .......... .......... .......... .......... 243 AATATATAAT TTGATTCACA TGATATTGCA GCGTGTGGTG CTTCTCTGGA CTTTGAGTCC 57721 ||||||||| |||||||||| |||||||||| .......... .......... .......... .CGTGTGGTG CTTCTCTGGA CTTTGAGTCC 272 TGCTGAGCGC GACGCCTACT TGGTTAATGA GGCTACCAAA CGTCTGACTG CTAGCAATTG 57781 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGCGC GACGCCTACT TGGTTAATGA GGCTACCAAA CGTCTGACTG CTAGCAATTG 332 GGTTATCATG GAAATTGCTT GTACCAGGTC TTCTGATGAT CTTTTTAAGG CGAGGCAGGC 57841 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTATCATG GAAATTGCTT GTACCAGGTC TTCTGATGAT CTTTTTAAGG CGAGGCAGGC 392 CTACCATGCT CGATACAAGA AATCACTTGA AGAAGATGTT GCTTATCATA CAAGTGGGGA 57901 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACCATGCT CGATACAAGA AATCACTTGA AGAAGATGTT GCTTATCATA CAAGTGGGGA 452 TTTCCGTAAG GTACTTCGCA TATAAGATCT ACTGTGCCAC ATTTAATTCA TTGTTATTCT 57961 |||||||||| TTTCCGTAAG .......... .......... .......... .......... .......... 462 AGTGCCAGTC AACTTTGTCA TTAGATCAGC TGTAGAGAAA AACCTATAGT CAGCCGAAGT 58021 .......... .......... .......... .......... .......... .......... 462 TTGCTAAAGA ATCTGCCACT TTGTTGTTTT CTATAAATCT ATAGACGATT CTGAAATTAC 58081 .......... .......... .......... .......... .......... .......... 462 TAGCCGAGAA TTTGGATGAA ATGAAGCTCC ACCATGAGTC TAGGTATCGG CAATTCTTGG 58141 .......... .......... .......... .......... .......... .......... 462 GGCTTTTTTA TTTTCATTGA AGCGATTATT TGACTGTTTA GTGATTCGAG AACCAGAAGA 58201 .......... .......... .......... .......... .......... .......... 462 TCATTTTGCC TAGTAAAGCT CATCAACTCT TCTTTTTGCT CGTTGTGACT TCTTAAGGAT 58261 .......... .......... .......... .......... .......... .......... 462 GATTCTTTCT ACCATGTAAG CTGTTGCACT TGCGCCTATT TGCCACCTTT GGGGTGTTTA 58321 .......... .......... .......... .......... .......... .......... 462 AGATGAATGA TAAACGGTGA CAAGTGATGG ATAGTCTCCG GTTACGACCA TCCACCTCCA 58381 .......... .......... .......... .......... .......... .......... 462 GCCATAACGT TGGGGGTTAA CCTCACCAAG GGAGCGAAGT GGAGAAGGAT CACCGTTGTT 58441 .......... .......... .......... .......... .......... .......... 462 GTGCTCTTGA GCCAGGGGAA ACTGAGGTTA CGGTTTACTG TGTCCAAAAA ATAAAATAAA 58501 .......... .......... .......... .......... .......... .......... 462 AGGTTTAAGG ATGATAGTGT CTGAGATAAC AGTGTAAATA GTTAGATAAG CACCTTAAAG 58561 .......... .......... .......... .......... .......... .......... 462 TTAGATTTTT GTGTTGTCTG TCTTTGTCTC CAGTGAATAC TGAGAATACA TGCAACAAAT 58621 .......... .......... .......... .......... .......... .......... 462 AAATCTTGCA ATCACCGTCG TTAAGCTGGT CATATTGTAT TAAACTAATT CCCGAACAGC 58681 | .......... .......... .......... .......... .......... .........C 463 TTTTGGTTCC TCTTATAACT GCATTCAGAT ATGAAGGAGA TGAGGTGAAC ATGACAT 58738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TTTTGGTTCC TCTTATAACT GCATTCAGAT ATGAAGGAGA TGAGGTGAAC ATGACAT 520 hqPGS_C04HBa0077O05.1+_SGN-E341290+ (55982 56078,57338 57483,57693 57911,58681 58738) ******************************************************************************** EST sequence 48 +strand 746 n (File: SGN-E335553+) 1 TCAAGAAAGG GAAAAAAAAT GTCTAGTCTT AAAGTTCCAG CATCAGTTCC AGATCCTTAT 61 GAAGATGCTG AGCAACTCAA AAAAGCTTTT AAAGGATGGG GCACAAATGA GGAACTTATT 121 ATTCAGATTC TGGCTCATAG GAATGCAGCA CAACGCAAGT TAATCCGAGA TTCTTATGCT 181 GCTGCTTATG GAGAGGATCT TCTCAAGGAC TTGGATTCTG AACTGACAAG TGATTTTCAG 241 CGTGTGGTGC TTCTCTGGAC TTTGAGTCCT GCTGAGCGCG ACGCCTACTT GGTTAATGAG 301 GCTACCAAAC GTCTGACTGC TAGCAATTGG GTTATCATGG AAATTGCTTG TACCAGGTCT 361 TCTGATGATC TTTTTAAGGC GAGGCAGGCC TACCATGCTC GATACAAGAA ATCACTTGAA 421 GAAGATGTTG CTTATCATAC AAGTGGGGAT TTCCGTAAGC TTTTGGTTCC TCTTATAACT 481 GCATTCAGAT ATGAAGGAGA TGAGGTGAAC ATGACATTAG CAAGAAAGGA AGCAAATATA 541 CTGCATGANG AAGATCTCTG ACAAGGCTTA CAATGACCGA GGAGATCATC CGAATCATTT 601 CTACTAGGAG TAAAGCACAG CTGAGTGCTA CGTTCAACCA CTACAATGAT CACCATGGCC 661 ATGAAATCAT CAAGGATCTG GAAGCTGATG ATGACCGATG AGTACCTGAA ACTACTCAGA 721 GCAGCAATAG AATGCTTGAA AACCCC Predicted gene structure (within gDNA segment 55385 to 59662): Exon 1 55985 56078 ( 94 n); cDNA 1 94 ( 94 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 95 240 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 241 459 ( 219 n); score: 1.000 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 1.00) Exon 4 58681 58893 ( 213 n); cDNA 460 674 ( 215 n); score: 0.977 Intron 4 58894 58981 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 0.95) Exon 5 58982 59052 ( 71 n); cDNA 675 746 ( 72 n); score: 0.965 MATCH C04HBa0077O05.1+ SGN-E335553+ 0.990 743 0.996 C PGS_C04HBa0077O05.1+_SGN-E335553+ (55985 56078,57338 57483,57693 57911,58681 58893,58982 59052) Alignment (genomic DNA sequence = upper lines): TCAAGAAAGG GAAAAAAAAT GTCTAGTCTT AAAGTTCCAG CATCAGTTCC AGATCCTTAT 56044 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGAAAGG GAAAAAAAAT GTCTAGTCTT AAAGTTCCAG CATCAGTTCC AGATCCTTAT 60 GAAGATGCTG AGCAACTCAA AAAAGCTTTT AAAGGTTTCA CTTTTTTTTT CTTCCAGATC 56104 |||||||||| |||||||||| |||||||||| |||| GAAGATGCTG AGCAACTCAA AAAAGCTTTT AAAG...... .......... .......... 94 CCCTTTGGTT GGATTTTGTA TGCCTGATTT TAGTGCAAGA TTTCTTTTCT ATATTTGCAT 56164 .......... .......... .......... .......... .......... .......... 94 TTGCTATTTT TCTTGAATGA TCAGTTGATT TTTACTTTTC CTTACTGTTT TTTCCTAGTT 56224 .......... .......... .......... .......... .......... .......... 94 TAGTTTAGTT TTAGTTCTTG ATGGGGTTCT TGTGATCTGA ATGATCTATT CAAAATTGTT 56284 .......... .......... .......... .......... .......... .......... 94 TCGAAATGTA ACATAGACCA TCTGCTGACT CTAAATCTTG AATCTGTCTC GGTTAGGTAA 56344 .......... .......... .......... .......... .......... .......... 94 AATGCTGTGT GATTTTTTAT TTAATTCATT GTTGGAGGAA ATTAGTGATC TTTGACTGTA 56404 .......... .......... .......... .......... .......... .......... 94 GGCATATGTA GAAGACATTT TTCTTTATGA TTCTGTGTAG TCATTTCCCA AACGTATGAT 56464 .......... .......... .......... .......... .......... .......... 94 TGGTCTAGAT TATTAATTTG TTGACAAAAA TGATTAACTC CAATTCTCCG TGGTGGTTAG 56524 .......... .......... .......... .......... .......... .......... 94 GCTGATTATG ATGTATGGGG CGAGTGGAGT GTTGGTTAGT TAAGAATTCT AATGTCAAAA 56584 .......... .......... .......... .......... .......... .......... 94 GATATGAGGT GGCGAAAATG AGGACGCTGA GGTGGATGTG GATATGTAGG AGAGATAAAG 56644 .......... .......... .......... .......... .......... .......... 94 ATTAAGAATG AAGATATCCA ACATAACGTG GGAGTGGCTT CCGTGATGGA CAAGATGAGG 56704 .......... .......... .......... .......... .......... .......... 94 GAAGTGAGAC TGAGATGGTT TAGACATGAT ATGTGAAGAG GAGGTGCACA GCGATCTAGG 56764 .......... .......... .......... .......... .......... .......... 94 GAGAAATGTT AGAGGTTGGC CGTAGTGAGT TTTAGGAGAC GTAGAGGGAA ACCAAAAAAG 56824 .......... .......... .......... .......... .......... .......... 94 TGTTGGGAGG GGTGATTAGA CAAAACATGA CGCAACTTCA GCTTTCCGAT GATATGATTC 56884 .......... .......... .......... .......... .......... .......... 94 TAGATTGAAG GTTATGGAGG TCACGGATTA GGGTAGAAGG TTAGTAAATA GTTGAATGTT 56944 .......... .......... .......... .......... .......... .......... 94 GTCTCGTTTC CAAGGGGATA GCTTGGTGGT AGTTTTGTTT CATTGTACCT ATTTCCCCAG 57004 .......... .......... .......... .......... .......... .......... 94 TAATACAAGT AGTAGTAGCA TTTTCTCATA GTTGTCTGTC TTGCAATTTT TGTTGCTCGT 57064 .......... .......... .......... .......... .......... .......... 94 TATTTACTGT GCTTCTGTTA TCACATTAGT TGGTTATTGT TATTGCTCTT GTTTTTTGAA 57124 .......... .......... .......... .......... .......... .......... 94 TGCTCTAGGT TATGCTTTCC CTTTAATTTT CAATGTCCTG TTACTCTGTT GTGTGTTTTG 57184 .......... .......... .......... .......... .......... .......... 94 GGAACAGCCT ATCTACCTCC ACGAGGTAGG GTTTAGGTTC CTCCCCAGAC CCCGACTATG 57244 .......... .......... .......... .......... .......... .......... 94 GGACTACATC GAGTTTGCTG TTGTTGTTTG GGCTTGCAAA GCAGGAAGCT GAATTTTGTT 57304 .......... .......... .......... .......... .......... .......... 94 TTCCACAGAA GACTCATGGT TAAACGTTTG CAGGATGGGG CACAAATGAG GAACTTATTA 57364 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GATGGGG CACAAATGAG GAACTTATTA 121 TTCAGATTCT GGCTCATAGG AATGCAGCAC AACGCAAGTT AATCCGAGAT TCTTATGCTG 57424 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGATTCT GGCTCATAGG AATGCAGCAC AACGCAAGTT AATCCGAGAT TCTTATGCTG 181 CTGCTTATGG AGAGGATCTT CTCAAGGACT TGGATTCTGA ACTGACAAGT GATTTTCAGG 57484 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CTGCTTATGG AGAGGATCTT CTCAAGGACT TGGATTCTGA ACTGACAAGT GATTTTCAG. 240 TTAATTAATC TCAATTTTCC ATTCTTGTTC CAAATTGTGT TGGAGTACAC CCCGTTTAAT 57544 .......... .......... .......... .......... .......... .......... 240 CAATCATTGT GGTGTATTGA ATGTTTTTCT TTTTGTTCAT TTATACTTTC TTAGATTTGT 57604 .......... .......... .......... .......... .......... .......... 240 CTAGTCCATA TCTACATTAT TAATCACAGG TAACATTAGC CAAGGATTGC TTTGACTAAT 57664 .......... .......... .......... .......... .......... .......... 240 ATATAATTTG ATTCACATGA TATTGCAGCG TGTGGTGCTT CTCTGGACTT TGAGTCCTGC 57724 || |||||||||| |||||||||| |||||||||| .......... .......... ........CG TGTGGTGCTT CTCTGGACTT TGAGTCCTGC 272 TGAGCGCGAC GCCTACTTGG TTAATGAGGC TACCAAACGT CTGACTGCTA GCAATTGGGT 57784 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGCGCGAC GCCTACTTGG TTAATGAGGC TACCAAACGT CTGACTGCTA GCAATTGGGT 332 TATCATGGAA ATTGCTTGTA CCAGGTCTTC TGATGATCTT TTTAAGGCGA GGCAGGCCTA 57844 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCATGGAA ATTGCTTGTA CCAGGTCTTC TGATGATCTT TTTAAGGCGA GGCAGGCCTA 392 CCATGCTCGA TACAAGAAAT CACTTGAAGA AGATGTTGCT TATCATACAA GTGGGGATTT 57904 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATGCTCGA TACAAGAAAT CACTTGAAGA AGATGTTGCT TATCATACAA GTGGGGATTT 452 CCGTAAGGTA CTTCGCATAT AAGATCTACT GTGCCACATT TAATTCATTG TTATTCTAGT 57964 ||||||| CCGTAAG... .......... .......... .......... .......... .......... 459 GCCAGTCAAC TTTGTCATTA GATCAGCTGT AGAGAAAAAC CTATAGTCAG CCGAAGTTTG 58024 .......... .......... .......... .......... .......... .......... 459 CTAAAGAATC TGCCACTTTG TTGTTTTCTA TAAATCTATA GACGATTCTG AAATTACTAG 58084 .......... .......... .......... .......... .......... .......... 459 CCGAGAATTT GGATGAAATG AAGCTCCACC ATGAGTCTAG GTATCGGCAA TTCTTGGGGC 58144 .......... .......... .......... .......... .......... .......... 459 TTTTTTATTT TCATTGAAGC GATTATTTGA CTGTTTAGTG ATTCGAGAAC CAGAAGATCA 58204 .......... .......... .......... .......... .......... .......... 459 TTTTGCCTAG TAAAGCTCAT CAACTCTTCT TTTTGCTCGT TGTGACTTCT TAAGGATGAT 58264 .......... .......... .......... .......... .......... .......... 459 TCTTTCTACC ATGTAAGCTG TTGCACTTGC GCCTATTTGC CACCTTTGGG GTGTTTAAGA 58324 .......... .......... .......... .......... .......... .......... 459 TGAATGATAA ACGGTGACAA GTGATGGATA GTCTCCGGTT ACGACCATCC ACCTCCAGCC 58384 .......... .......... .......... .......... .......... .......... 459 ATAACGTTGG GGGTTAACCT CACCAAGGGA GCGAAGTGGA GAAGGATCAC CGTTGTTGTG 58444 .......... .......... .......... .......... .......... .......... 459 CTCTTGAGCC AGGGGAAACT GAGGTTACGG TTTACTGTGT CCAAAAAATA AAATAAAAGG 58504 .......... .......... .......... .......... .......... .......... 459 TTTAAGGATG ATAGTGTCTG AGATAACAGT GTAAATAGTT AGATAAGCAC CTTAAAGTTA 58564 .......... .......... .......... .......... .......... .......... 459 GATTTTTGTG TTGTCTGTCT TTGTCTCCAG TGAATACTGA GAATACATGC AACAAATAAA 58624 .......... .......... .......... .......... .......... .......... 459 TCTTGCAATC ACCGTCGTTA AGCTGGTCAT ATTGTATTAA ACTAATTCCC GAACAGCTTT 58684 |||| .......... .......... .......... .......... .......... ......CTTT 463 TGGTTCCTCT TATAACTGCA TTCAGATATG AAGGAGATGA GGTGAACATG ACATTAGCAA 58744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTCCTCT TATAACTGCA TTCAGATATG AAGGAGATGA GGTGAACATG ACATTAGCAA 523 GAAAGGAAGC AAATATACTG CATGA-GAAG ATCTCTGACA AGGCTTACAA TGA-CGAGGA 58802 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| ||| |||||| GAAAGGAAGC AAATATACTG CATGANGAAG ATCTCTGACA AGGCTTACAA TGACCGAGGA 583 GATCATCCGA ATCATTTCTA CTAGGAGTAA AGCACAGCTG AGTGCTACGT TCAACCACTA 58862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCATCCGA ATCATTTCTA CTAGGAGTAA AGCACAGCTG AGTGCTACGT TCAACCACTA 643 CAATGATCAC CATGGCCATG AAATCATCAA GGTAAAACTC AAACATTAGA AAGACTTGAA 58922 |||||||||| |||||||||| |||||||||| | CAATGATCAC CATGGCCATG AAATCATCAA G......... .......... .......... 674 ATTATGTTAG TTACCATTGT TTAAAAGGGA TCTATTCATT GTACTGTGTG ATGATGCAGG 58982 | .......... .......... .......... .......... .......... .........G 675 ATCTGGAAGC TGATGATGA- CGATGAGTAC CTGAAACTAC TCAGAGCAGC AATAGAATGC 59041 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTGGAAGC TGATGATGAC CGATGAGTAC CTGAAACTAC TCAGAGCAGC AATAGAATGC 735 TTGAAAACCC C 59052 |||||||||| | TTGAAAACCC C 746 hqPGS_C04HBa0077O05.1+_SGN-E335553+ (55985 56078,57338 57483,57693 57911,58681 58893,58982 59052) ******************************************************************************** EST sequence 140 +strand 602 n (File: SGN-E330285+) 1 TCAAGAAAGG GAAAAAAAAT GTCTAGTCTT AAAGTTCCAG CATCAGTTCC AGATCCTTAT 61 GAAGATGCTG AGCAACTCAA AAAAGCTTTT AAAGGATGGG GCACAAATGA GGAACTTATT 121 ATTCAGATTC TGGCTCATAG GAATGCAGCA CAACGCAAGT TAATCCGAGA TTCTTATGCT 181 GCTGCTTATG GAGAGGATCT TCTCAAGGAC TTGGATTCTG AACTGACAAG TGATTTTCAG 241 CGTGTGGTGC TTCTCTGGAC TTTGAGTCCT GCTGAGCGCG ACGCCTACTT GGTTAATGAG 301 GCTACCAAAC GTCTGACTGC TAGCAATTGG GTTATCATGG AAATTGCTTG TACCAGGTCT 361 TCTGATGATC TTTTTAAGGC GAGGCAGGCC TACCATGCTC GATACAAGAA ATCACTTGAA 421 GAAGATGTTG CTTATCATAC AAGTGGGGAT TTCCGTAAGC TTTTGGTTCC TCTTATAACT 481 GCATTCAGAT ATGAAGGAGA TGAGGTGAAC ATGACATTAG CAAGAAAGGA AGCAAATATA 541 CTGCATGAGA AGATCTCTGA CAAGGCTTAC AATGACGAGG AGATCATCCG AATCATTTCT 601 AC Predicted gene structure (within gDNA segment 55385 to 59433): Exon 1 55985 56078 ( 94 n); cDNA 1 94 ( 94 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 95 240 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 241 459 ( 219 n); score: 1.000 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 1.00) Exon 4 58681 58823 ( 143 n); cDNA 460 602 ( 143 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E330285+ 1.000 602 1.000 C PGS_C04HBa0077O05.1+_SGN-E330285+ (55985 56078,57338 57483,57693 57911,58681 58823) Alignment (genomic DNA sequence = upper lines): TCAAGAAAGG GAAAAAAAAT GTCTAGTCTT AAAGTTCCAG CATCAGTTCC AGATCCTTAT 56044 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGAAAGG GAAAAAAAAT GTCTAGTCTT AAAGTTCCAG CATCAGTTCC AGATCCTTAT 60 GAAGATGCTG AGCAACTCAA AAAAGCTTTT AAAGGTTTCA CTTTTTTTTT CTTCCAGATC 56104 |||||||||| |||||||||| |||||||||| |||| GAAGATGCTG AGCAACTCAA AAAAGCTTTT AAAG...... .......... .......... 94 CCCTTTGGTT GGATTTTGTA TGCCTGATTT TAGTGCAAGA TTTCTTTTCT ATATTTGCAT 56164 .......... .......... .......... .......... .......... .......... 94 TTGCTATTTT TCTTGAATGA TCAGTTGATT TTTACTTTTC CTTACTGTTT TTTCCTAGTT 56224 .......... .......... .......... .......... .......... .......... 94 TAGTTTAGTT TTAGTTCTTG ATGGGGTTCT TGTGATCTGA ATGATCTATT CAAAATTGTT 56284 .......... .......... .......... .......... .......... .......... 94 TCGAAATGTA ACATAGACCA TCTGCTGACT CTAAATCTTG AATCTGTCTC GGTTAGGTAA 56344 .......... .......... .......... .......... .......... .......... 94 AATGCTGTGT GATTTTTTAT TTAATTCATT GTTGGAGGAA ATTAGTGATC TTTGACTGTA 56404 .......... .......... .......... .......... .......... .......... 94 GGCATATGTA GAAGACATTT TTCTTTATGA TTCTGTGTAG TCATTTCCCA AACGTATGAT 56464 .......... .......... .......... .......... .......... .......... 94 TGGTCTAGAT TATTAATTTG TTGACAAAAA TGATTAACTC CAATTCTCCG TGGTGGTTAG 56524 .......... .......... .......... .......... .......... .......... 94 GCTGATTATG ATGTATGGGG CGAGTGGAGT GTTGGTTAGT TAAGAATTCT AATGTCAAAA 56584 .......... .......... .......... .......... .......... .......... 94 GATATGAGGT GGCGAAAATG AGGACGCTGA GGTGGATGTG GATATGTAGG AGAGATAAAG 56644 .......... .......... .......... .......... .......... .......... 94 ATTAAGAATG AAGATATCCA ACATAACGTG GGAGTGGCTT CCGTGATGGA CAAGATGAGG 56704 .......... .......... .......... .......... .......... .......... 94 GAAGTGAGAC TGAGATGGTT TAGACATGAT ATGTGAAGAG GAGGTGCACA GCGATCTAGG 56764 .......... .......... .......... .......... .......... .......... 94 GAGAAATGTT AGAGGTTGGC CGTAGTGAGT TTTAGGAGAC GTAGAGGGAA ACCAAAAAAG 56824 .......... .......... .......... .......... .......... .......... 94 TGTTGGGAGG GGTGATTAGA CAAAACATGA CGCAACTTCA GCTTTCCGAT GATATGATTC 56884 .......... .......... .......... .......... .......... .......... 94 TAGATTGAAG GTTATGGAGG TCACGGATTA GGGTAGAAGG TTAGTAAATA GTTGAATGTT 56944 .......... .......... .......... .......... .......... .......... 94 GTCTCGTTTC CAAGGGGATA GCTTGGTGGT AGTTTTGTTT CATTGTACCT ATTTCCCCAG 57004 .......... .......... .......... .......... .......... .......... 94 TAATACAAGT AGTAGTAGCA TTTTCTCATA GTTGTCTGTC TTGCAATTTT TGTTGCTCGT 57064 .......... .......... .......... .......... .......... .......... 94 TATTTACTGT GCTTCTGTTA TCACATTAGT TGGTTATTGT TATTGCTCTT GTTTTTTGAA 57124 .......... .......... .......... .......... .......... .......... 94 TGCTCTAGGT TATGCTTTCC CTTTAATTTT CAATGTCCTG TTACTCTGTT GTGTGTTTTG 57184 .......... .......... .......... .......... .......... .......... 94 GGAACAGCCT ATCTACCTCC ACGAGGTAGG GTTTAGGTTC CTCCCCAGAC CCCGACTATG 57244 .......... .......... .......... .......... .......... .......... 94 GGACTACATC GAGTTTGCTG TTGTTGTTTG GGCTTGCAAA GCAGGAAGCT GAATTTTGTT 57304 .......... .......... .......... .......... .......... .......... 94 TTCCACAGAA GACTCATGGT TAAACGTTTG CAGGATGGGG CACAAATGAG GAACTTATTA 57364 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GATGGGG CACAAATGAG GAACTTATTA 121 TTCAGATTCT GGCTCATAGG AATGCAGCAC AACGCAAGTT AATCCGAGAT TCTTATGCTG 57424 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGATTCT GGCTCATAGG AATGCAGCAC AACGCAAGTT AATCCGAGAT TCTTATGCTG 181 CTGCTTATGG AGAGGATCTT CTCAAGGACT TGGATTCTGA ACTGACAAGT GATTTTCAGG 57484 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CTGCTTATGG AGAGGATCTT CTCAAGGACT TGGATTCTGA ACTGACAAGT GATTTTCAG. 240 TTAATTAATC TCAATTTTCC ATTCTTGTTC CAAATTGTGT TGGAGTACAC CCCGTTTAAT 57544 .......... .......... .......... .......... .......... .......... 240 CAATCATTGT GGTGTATTGA ATGTTTTTCT TTTTGTTCAT TTATACTTTC TTAGATTTGT 57604 .......... .......... .......... .......... .......... .......... 240 CTAGTCCATA TCTACATTAT TAATCACAGG TAACATTAGC CAAGGATTGC TTTGACTAAT 57664 .......... .......... .......... .......... .......... .......... 240 ATATAATTTG ATTCACATGA TATTGCAGCG TGTGGTGCTT CTCTGGACTT TGAGTCCTGC 57724 || |||||||||| |||||||||| |||||||||| .......... .......... ........CG TGTGGTGCTT CTCTGGACTT TGAGTCCTGC 272 TGAGCGCGAC GCCTACTTGG TTAATGAGGC TACCAAACGT CTGACTGCTA GCAATTGGGT 57784 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGCGCGAC GCCTACTTGG TTAATGAGGC TACCAAACGT CTGACTGCTA GCAATTGGGT 332 TATCATGGAA ATTGCTTGTA CCAGGTCTTC TGATGATCTT TTTAAGGCGA GGCAGGCCTA 57844 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCATGGAA ATTGCTTGTA CCAGGTCTTC TGATGATCTT TTTAAGGCGA GGCAGGCCTA 392 CCATGCTCGA TACAAGAAAT CACTTGAAGA AGATGTTGCT TATCATACAA GTGGGGATTT 57904 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATGCTCGA TACAAGAAAT CACTTGAAGA AGATGTTGCT TATCATACAA GTGGGGATTT 452 CCGTAAGGTA CTTCGCATAT AAGATCTACT GTGCCACATT TAATTCATTG TTATTCTAGT 57964 ||||||| CCGTAAG... .......... .......... .......... .......... .......... 459 GCCAGTCAAC TTTGTCATTA GATCAGCTGT AGAGAAAAAC CTATAGTCAG CCGAAGTTTG 58024 .......... .......... .......... .......... .......... .......... 459 CTAAAGAATC TGCCACTTTG TTGTTTTCTA TAAATCTATA GACGATTCTG AAATTACTAG 58084 .......... .......... .......... .......... .......... .......... 459 CCGAGAATTT GGATGAAATG AAGCTCCACC ATGAGTCTAG GTATCGGCAA TTCTTGGGGC 58144 .......... .......... .......... .......... .......... .......... 459 TTTTTTATTT TCATTGAAGC GATTATTTGA CTGTTTAGTG ATTCGAGAAC CAGAAGATCA 58204 .......... .......... .......... .......... .......... .......... 459 TTTTGCCTAG TAAAGCTCAT CAACTCTTCT TTTTGCTCGT TGTGACTTCT TAAGGATGAT 58264 .......... .......... .......... .......... .......... .......... 459 TCTTTCTACC ATGTAAGCTG TTGCACTTGC GCCTATTTGC CACCTTTGGG GTGTTTAAGA 58324 .......... .......... .......... .......... .......... .......... 459 TGAATGATAA ACGGTGACAA GTGATGGATA GTCTCCGGTT ACGACCATCC ACCTCCAGCC 58384 .......... .......... .......... .......... .......... .......... 459 ATAACGTTGG GGGTTAACCT CACCAAGGGA GCGAAGTGGA GAAGGATCAC CGTTGTTGTG 58444 .......... .......... .......... .......... .......... .......... 459 CTCTTGAGCC AGGGGAAACT GAGGTTACGG TTTACTGTGT CCAAAAAATA AAATAAAAGG 58504 .......... .......... .......... .......... .......... .......... 459 TTTAAGGATG ATAGTGTCTG AGATAACAGT GTAAATAGTT AGATAAGCAC CTTAAAGTTA 58564 .......... .......... .......... .......... .......... .......... 459 GATTTTTGTG TTGTCTGTCT TTGTCTCCAG TGAATACTGA GAATACATGC AACAAATAAA 58624 .......... .......... .......... .......... .......... .......... 459 TCTTGCAATC ACCGTCGTTA AGCTGGTCAT ATTGTATTAA ACTAATTCCC GAACAGCTTT 58684 |||| .......... .......... .......... .......... .......... ......CTTT 463 TGGTTCCTCT TATAACTGCA TTCAGATATG AAGGAGATGA GGTGAACATG ACATTAGCAA 58744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTCCTCT TATAACTGCA TTCAGATATG AAGGAGATGA GGTGAACATG ACATTAGCAA 523 GAAAGGAAGC AAATATACTG CATGAGAAGA TCTCTGACAA GGCTTACAAT GACGAGGAGA 58804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGGAAGC AAATATACTG CATGAGAAGA TCTCTGACAA GGCTTACAAT GACGAGGAGA 583 TCATCCGAAT CATTTCTAC 58823 |||||||||| ||||||||| TCATCCGAAT CATTTCTAC 602 hqPGS_C04HBa0077O05.1+_SGN-E330285+ (55985 56078,57338 57483,57693 57911,58681 58823) ******************************************************************************** EST sequence 16 +strand 519 n (File: SGN-E304596+) 1 AAGAAAGGGA AAAAAAATGT CTAGTCTTAA AGTTCCAGCA TCAGTTCCAG ATCCTTATGA 61 AGATGCTGAG CAACTCAAAA AAGCTTTTAA AGGATGGGGC ACAAATGAGG AACTTATTAT 121 TCAGATTCTG GCTCATAGGA ATGCAGCACA ACGCAAGTTA ATCCGAGATT CTTATGCTGC 181 TGCTTATGGA GAGGATCTTC TCAAGGACTT GGATTCTGAA CTGACAAGTG ATTTTCAGCG 241 TGTGGTGCTT CTCTGGACTT TGAGTCCTGC TGAGCGCGAC GCCTACTTGG TTAATGAGGC 301 TACCAAACGT CTGACTGCTA GCAATTGGGT TATCATGGAA ATTGCTTGTA CCAGGTCTTC 361 TGATGATCTT TTTAAGGCGA GGCAGGCCTA CCATGCTCGA TACAAGAAAT CACTTGAAGA 421 AGATGTTGCT TATCATACAA GTGGGGATTT CCGTAAGCTT TTGGTTCCTC TTATAACTGC 481 ATTCAGATAT GAAGGAGATG AGGTGAACAT GACATTAGC Predicted gene structure (within gDNA segment 55369 to 59352): Exon 1 55987 56078 ( 92 n); cDNA 1 92 ( 92 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 93 238 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 239 457 ( 219 n); score: 1.000 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 1.00) Exon 4 58681 58742 ( 62 n); cDNA 458 519 ( 62 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E304596+ 1.000 519 1.000 C PGS_C04HBa0077O05.1+_SGN-E304596+ (55987 56078,57338 57483,57693 57911,58681 58742) Alignment (genomic DNA sequence = upper lines): AAGAAAGGGA AAAAAAATGT CTAGTCTTAA AGTTCCAGCA TCAGTTCCAG ATCCTTATGA 56046 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAAGGGA AAAAAAATGT CTAGTCTTAA AGTTCCAGCA TCAGTTCCAG ATCCTTATGA 60 AGATGCTGAG CAACTCAAAA AAGCTTTTAA AGGTTTCACT TTTTTTTTCT TCCAGATCCC 56106 |||||||||| |||||||||| |||||||||| || AGATGCTGAG CAACTCAAAA AAGCTTTTAA AG........ .......... .......... 92 CTTTGGTTGG ATTTTGTATG CCTGATTTTA GTGCAAGATT TCTTTTCTAT ATTTGCATTT 56166 .......... .......... .......... .......... .......... .......... 92 GCTATTTTTC TTGAATGATC AGTTGATTTT TACTTTTCCT TACTGTTTTT TCCTAGTTTA 56226 .......... .......... .......... .......... .......... .......... 92 GTTTAGTTTT AGTTCTTGAT GGGGTTCTTG TGATCTGAAT GATCTATTCA AAATTGTTTC 56286 .......... .......... .......... .......... .......... .......... 92 GAAATGTAAC ATAGACCATC TGCTGACTCT AAATCTTGAA TCTGTCTCGG TTAGGTAAAA 56346 .......... .......... .......... .......... .......... .......... 92 TGCTGTGTGA TTTTTTATTT AATTCATTGT TGGAGGAAAT TAGTGATCTT TGACTGTAGG 56406 .......... .......... .......... .......... .......... .......... 92 CATATGTAGA AGACATTTTT CTTTATGATT CTGTGTAGTC ATTTCCCAAA CGTATGATTG 56466 .......... .......... .......... .......... .......... .......... 92 GTCTAGATTA TTAATTTGTT GACAAAAATG ATTAACTCCA ATTCTCCGTG GTGGTTAGGC 56526 .......... .......... .......... .......... .......... .......... 92 TGATTATGAT GTATGGGGCG AGTGGAGTGT TGGTTAGTTA AGAATTCTAA TGTCAAAAGA 56586 .......... .......... .......... .......... .......... .......... 92 TATGAGGTGG CGAAAATGAG GACGCTGAGG TGGATGTGGA TATGTAGGAG AGATAAAGAT 56646 .......... .......... .......... .......... .......... .......... 92 TAAGAATGAA GATATCCAAC ATAACGTGGG AGTGGCTTCC GTGATGGACA AGATGAGGGA 56706 .......... .......... .......... .......... .......... .......... 92 AGTGAGACTG AGATGGTTTA GACATGATAT GTGAAGAGGA GGTGCACAGC GATCTAGGGA 56766 .......... .......... .......... .......... .......... .......... 92 GAAATGTTAG AGGTTGGCCG TAGTGAGTTT TAGGAGACGT AGAGGGAAAC CAAAAAAGTG 56826 .......... .......... .......... .......... .......... .......... 92 TTGGGAGGGG TGATTAGACA AAACATGACG CAACTTCAGC TTTCCGATGA TATGATTCTA 56886 .......... .......... .......... .......... .......... .......... 92 GATTGAAGGT TATGGAGGTC ACGGATTAGG GTAGAAGGTT AGTAAATAGT TGAATGTTGT 56946 .......... .......... .......... .......... .......... .......... 92 CTCGTTTCCA AGGGGATAGC TTGGTGGTAG TTTTGTTTCA TTGTACCTAT TTCCCCAGTA 57006 .......... .......... .......... .......... .......... .......... 92 ATACAAGTAG TAGTAGCATT TTCTCATAGT TGTCTGTCTT GCAATTTTTG TTGCTCGTTA 57066 .......... .......... .......... .......... .......... .......... 92 TTTACTGTGC TTCTGTTATC ACATTAGTTG GTTATTGTTA TTGCTCTTGT TTTTTGAATG 57126 .......... .......... .......... .......... .......... .......... 92 CTCTAGGTTA TGCTTTCCCT TTAATTTTCA ATGTCCTGTT ACTCTGTTGT GTGTTTTGGG 57186 .......... .......... .......... .......... .......... .......... 92 AACAGCCTAT CTACCTCCAC GAGGTAGGGT TTAGGTTCCT CCCCAGACCC CGACTATGGG 57246 .......... .......... .......... .......... .......... .......... 92 ACTACATCGA GTTTGCTGTT GTTGTTTGGG CTTGCAAAGC AGGAAGCTGA ATTTTGTTTT 57306 .......... .......... .......... .......... .......... .......... 92 CCACAGAAGA CTCATGGTTA AACGTTTGCA GGATGGGGCA CAAATGAGGA ACTTATTATT 57366 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GATGGGGCA CAAATGAGGA ACTTATTATT 121 CAGATTCTGG CTCATAGGAA TGCAGCACAA CGCAAGTTAA TCCGAGATTC TTATGCTGCT 57426 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGATTCTGG CTCATAGGAA TGCAGCACAA CGCAAGTTAA TCCGAGATTC TTATGCTGCT 181 GCTTATGGAG AGGATCTTCT CAAGGACTTG GATTCTGAAC TGACAAGTGA TTTTCAGGTT 57486 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GCTTATGGAG AGGATCTTCT CAAGGACTTG GATTCTGAAC TGACAAGTGA TTTTCAG... 238 AATTAATCTC AATTTTCCAT TCTTGTTCCA AATTGTGTTG GAGTACACCC CGTTTAATCA 57546 .......... .......... .......... .......... .......... .......... 238 ATCATTGTGG TGTATTGAAT GTTTTTCTTT TTGTTCATTT ATACTTTCTT AGATTTGTCT 57606 .......... .......... .......... .......... .......... .......... 238 AGTCCATATC TACATTATTA ATCACAGGTA ACATTAGCCA AGGATTGCTT TGACTAATAT 57666 .......... .......... .......... .......... .......... .......... 238 ATAATTTGAT TCACATGATA TTGCAGCGTG TGGTGCTTCT CTGGACTTTG AGTCCTGCTG 57726 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......CGTG TGGTGCTTCT CTGGACTTTG AGTCCTGCTG 272 AGCGCGACGC CTACTTGGTT AATGAGGCTA CCAAACGTCT GACTGCTAGC AATTGGGTTA 57786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCGCGACGC CTACTTGGTT AATGAGGCTA CCAAACGTCT GACTGCTAGC AATTGGGTTA 332 TCATGGAAAT TGCTTGTACC AGGTCTTCTG ATGATCTTTT TAAGGCGAGG CAGGCCTACC 57846 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATGGAAAT TGCTTGTACC AGGTCTTCTG ATGATCTTTT TAAGGCGAGG CAGGCCTACC 392 ATGCTCGATA CAAGAAATCA CTTGAAGAAG ATGTTGCTTA TCATACAAGT GGGGATTTCC 57906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCTCGATA CAAGAAATCA CTTGAAGAAG ATGTTGCTTA TCATACAAGT GGGGATTTCC 452 GTAAGGTACT TCGCATATAA GATCTACTGT GCCACATTTA ATTCATTGTT ATTCTAGTGC 57966 ||||| GTAAG..... .......... .......... .......... .......... .......... 457 CAGTCAACTT TGTCATTAGA TCAGCTGTAG AGAAAAACCT ATAGTCAGCC GAAGTTTGCT 58026 .......... .......... .......... .......... .......... .......... 457 AAAGAATCTG CCACTTTGTT GTTTTCTATA AATCTATAGA CGATTCTGAA ATTACTAGCC 58086 .......... .......... .......... .......... .......... .......... 457 GAGAATTTGG ATGAAATGAA GCTCCACCAT GAGTCTAGGT ATCGGCAATT CTTGGGGCTT 58146 .......... .......... .......... .......... .......... .......... 457 TTTTATTTTC ATTGAAGCGA TTATTTGACT GTTTAGTGAT TCGAGAACCA GAAGATCATT 58206 .......... .......... .......... .......... .......... .......... 457 TTGCCTAGTA AAGCTCATCA ACTCTTCTTT TTGCTCGTTG TGACTTCTTA AGGATGATTC 58266 .......... .......... .......... .......... .......... .......... 457 TTTCTACCAT GTAAGCTGTT GCACTTGCGC CTATTTGCCA CCTTTGGGGT GTTTAAGATG 58326 .......... .......... .......... .......... .......... .......... 457 AATGATAAAC GGTGACAAGT GATGGATAGT CTCCGGTTAC GACCATCCAC CTCCAGCCAT 58386 .......... .......... .......... .......... .......... .......... 457 AACGTTGGGG GTTAACCTCA CCAAGGGAGC GAAGTGGAGA AGGATCACCG TTGTTGTGCT 58446 .......... .......... .......... .......... .......... .......... 457 CTTGAGCCAG GGGAAACTGA GGTTACGGTT TACTGTGTCC AAAAAATAAA ATAAAAGGTT 58506 .......... .......... .......... .......... .......... .......... 457 TAAGGATGAT AGTGTCTGAG ATAACAGTGT AAATAGTTAG ATAAGCACCT TAAAGTTAGA 58566 .......... .......... .......... .......... .......... .......... 457 TTTTTGTGTT GTCTGTCTTT GTCTCCAGTG AATACTGAGA ATACATGCAA CAAATAAATC 58626 .......... .......... .......... .......... .......... .......... 457 TTGCAATCAC CGTCGTTAAG CTGGTCATAT TGTATTAAAC TAATTCCCGA ACAGCTTTTG 58686 |||||| .......... .......... .......... .......... .......... ....CTTTTG 463 GTTCCTCTTA TAACTGCATT CAGATATGAA GGAGATGAGG TGAACATGAC ATTAGC 58742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GTTCCTCTTA TAACTGCATT CAGATATGAA GGAGATGAGG TGAACATGAC ATTAGC 519 hqPGS_C04HBa0077O05.1+_SGN-E304596+ (55987 56078,57338 57483,57693 57911,58681 58742) ******************************************************************************** EST sequence 132 +strand 581 n (File: SGN-E245809+) 1 AGAAAGGGAA AAAAAATGTC TAGTCTTAAA GTTCCAGCAT CAGTTCCAGA TCCTTATGAA 61 GATGCTGAGC AACTCAAAAA AGCTTTTAAA GGATGGGGCA CAAATGAGGA ACTTATTATT 121 CAGATTCTGG CTCATAGGAA TGCAGCACAA CGCAAGTTAA TCCGAGATTC TTATGCTGCT 181 GCTTATGGAG AGGATCTTCT CAAGGACTTG GATTCTGAAC TGACAAGTGA TTTTCAGCGT 241 GTGGTGCTTC TCTGGACTTT GAGTCCTGCT GAGCGCGACG CCTACTTGGT TAATGAGGCT 301 ACCAAACGTC TGACTGCTAG CAATTGGGTT ATCATGGAAA TTGCTTGTAC CAGGTCTTCT 361 GATGATCTTT TTAAGGCGAG GCAGGCCTAC CATGCTCGAT ACAAGAAATC ACTTGAAGAA 421 GATGTTGCTT ATCATACAAG TGGGGATTTC CGTAAGCTTT TGGTTCCTCT TATAACTGCA 481 TTCAGATATG AAGGAGATGA GGTGAACATG ACATTAGCAA GAAAGGAAGC AAATATACTG 541 CATGAGAAGA TCTCTGACAA GGCTTACAAT GACGAGGAGA T Predicted gene structure (within gDNA segment 55379 to 59415): Exon 1 55988 56078 ( 91 n); cDNA 1 91 ( 91 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 92 237 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 238 456 ( 219 n); score: 1.000 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 1.00) Exon 4 58681 58805 ( 125 n); cDNA 457 581 ( 125 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E245809+ 1.000 581 1.000 C PGS_C04HBa0077O05.1+_SGN-E245809+ (55988 56078,57338 57483,57693 57911,58681 58805) Alignment (genomic DNA sequence = upper lines): AGAAAGGGAA AAAAAATGTC TAGTCTTAAA GTTCCAGCAT CAGTTCCAGA TCCTTATGAA 56047 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAGGGAA AAAAAATGTC TAGTCTTAAA GTTCCAGCAT CAGTTCCAGA TCCTTATGAA 60 GATGCTGAGC AACTCAAAAA AGCTTTTAAA GGTTTCACTT TTTTTTTCTT CCAGATCCCC 56107 |||||||||| |||||||||| |||||||||| | GATGCTGAGC AACTCAAAAA AGCTTTTAAA G......... .......... .......... 91 TTTGGTTGGA TTTTGTATGC CTGATTTTAG TGCAAGATTT CTTTTCTATA TTTGCATTTG 56167 .......... .......... .......... .......... .......... .......... 91 CTATTTTTCT TGAATGATCA GTTGATTTTT ACTTTTCCTT ACTGTTTTTT CCTAGTTTAG 56227 .......... .......... .......... .......... .......... .......... 91 TTTAGTTTTA GTTCTTGATG GGGTTCTTGT GATCTGAATG ATCTATTCAA AATTGTTTCG 56287 .......... .......... .......... .......... .......... .......... 91 AAATGTAACA TAGACCATCT GCTGACTCTA AATCTTGAAT CTGTCTCGGT TAGGTAAAAT 56347 .......... .......... .......... .......... .......... .......... 91 GCTGTGTGAT TTTTTATTTA ATTCATTGTT GGAGGAAATT AGTGATCTTT GACTGTAGGC 56407 .......... .......... .......... .......... .......... .......... 91 ATATGTAGAA GACATTTTTC TTTATGATTC TGTGTAGTCA TTTCCCAAAC GTATGATTGG 56467 .......... .......... .......... .......... .......... .......... 91 TCTAGATTAT TAATTTGTTG ACAAAAATGA TTAACTCCAA TTCTCCGTGG TGGTTAGGCT 56527 .......... .......... .......... .......... .......... .......... 91 GATTATGATG TATGGGGCGA GTGGAGTGTT GGTTAGTTAA GAATTCTAAT GTCAAAAGAT 56587 .......... .......... .......... .......... .......... .......... 91 ATGAGGTGGC GAAAATGAGG ACGCTGAGGT GGATGTGGAT ATGTAGGAGA GATAAAGATT 56647 .......... .......... .......... .......... .......... .......... 91 AAGAATGAAG ATATCCAACA TAACGTGGGA GTGGCTTCCG TGATGGACAA GATGAGGGAA 56707 .......... .......... .......... .......... .......... .......... 91 GTGAGACTGA GATGGTTTAG ACATGATATG TGAAGAGGAG GTGCACAGCG ATCTAGGGAG 56767 .......... .......... .......... .......... .......... .......... 91 AAATGTTAGA GGTTGGCCGT AGTGAGTTTT AGGAGACGTA GAGGGAAACC AAAAAAGTGT 56827 .......... .......... .......... .......... .......... .......... 91 TGGGAGGGGT GATTAGACAA AACATGACGC AACTTCAGCT TTCCGATGAT ATGATTCTAG 56887 .......... .......... .......... .......... .......... .......... 91 ATTGAAGGTT ATGGAGGTCA CGGATTAGGG TAGAAGGTTA GTAAATAGTT GAATGTTGTC 56947 .......... .......... .......... .......... .......... .......... 91 TCGTTTCCAA GGGGATAGCT TGGTGGTAGT TTTGTTTCAT TGTACCTATT TCCCCAGTAA 57007 .......... .......... .......... .......... .......... .......... 91 TACAAGTAGT AGTAGCATTT TCTCATAGTT GTCTGTCTTG CAATTTTTGT TGCTCGTTAT 57067 .......... .......... .......... .......... .......... .......... 91 TTACTGTGCT TCTGTTATCA CATTAGTTGG TTATTGTTAT TGCTCTTGTT TTTTGAATGC 57127 .......... .......... .......... .......... .......... .......... 91 TCTAGGTTAT GCTTTCCCTT TAATTTTCAA TGTCCTGTTA CTCTGTTGTG TGTTTTGGGA 57187 .......... .......... .......... .......... .......... .......... 91 ACAGCCTATC TACCTCCACG AGGTAGGGTT TAGGTTCCTC CCCAGACCCC GACTATGGGA 57247 .......... .......... .......... .......... .......... .......... 91 CTACATCGAG TTTGCTGTTG TTGTTTGGGC TTGCAAAGCA GGAAGCTGAA TTTTGTTTTC 57307 .......... .......... .......... .......... .......... .......... 91 CACAGAAGAC TCATGGTTAA ACGTTTGCAG GATGGGGCAC AAATGAGGAA CTTATTATTC 57367 |||||||||| |||||||||| |||||||||| .......... .......... .......... GATGGGGCAC AAATGAGGAA CTTATTATTC 121 AGATTCTGGC TCATAGGAAT GCAGCACAAC GCAAGTTAAT CCGAGATTCT TATGCTGCTG 57427 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTCTGGC TCATAGGAAT GCAGCACAAC GCAAGTTAAT CCGAGATTCT TATGCTGCTG 181 CTTATGGAGA GGATCTTCTC AAGGACTTGG ATTCTGAACT GACAAGTGAT TTTCAGGTTA 57487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| CTTATGGAGA GGATCTTCTC AAGGACTTGG ATTCTGAACT GACAAGTGAT TTTCAG.... 237 ATTAATCTCA ATTTTCCATT CTTGTTCCAA ATTGTGTTGG AGTACACCCC GTTTAATCAA 57547 .......... .......... .......... .......... .......... .......... 237 TCATTGTGGT GTATTGAATG TTTTTCTTTT TGTTCATTTA TACTTTCTTA GATTTGTCTA 57607 .......... .......... .......... .......... .......... .......... 237 GTCCATATCT ACATTATTAA TCACAGGTAA CATTAGCCAA GGATTGCTTT GACTAATATA 57667 .......... .......... .......... .......... .......... .......... 237 TAATTTGATT CACATGATAT TGCAGCGTGT GGTGCTTCTC TGGACTTTGA GTCCTGCTGA 57727 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....CGTGT GGTGCTTCTC TGGACTTTGA GTCCTGCTGA 272 GCGCGACGCC TACTTGGTTA ATGAGGCTAC CAAACGTCTG ACTGCTAGCA ATTGGGTTAT 57787 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGCGACGCC TACTTGGTTA ATGAGGCTAC CAAACGTCTG ACTGCTAGCA ATTGGGTTAT 332 CATGGAAATT GCTTGTACCA GGTCTTCTGA TGATCTTTTT AAGGCGAGGC AGGCCTACCA 57847 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGAAATT GCTTGTACCA GGTCTTCTGA TGATCTTTTT AAGGCGAGGC AGGCCTACCA 392 TGCTCGATAC AAGAAATCAC TTGAAGAAGA TGTTGCTTAT CATACAAGTG GGGATTTCCG 57907 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCGATAC AAGAAATCAC TTGAAGAAGA TGTTGCTTAT CATACAAGTG GGGATTTCCG 452 TAAGGTACTT CGCATATAAG ATCTACTGTG CCACATTTAA TTCATTGTTA TTCTAGTGCC 57967 |||| TAAG...... .......... .......... .......... .......... .......... 456 AGTCAACTTT GTCATTAGAT CAGCTGTAGA GAAAAACCTA TAGTCAGCCG AAGTTTGCTA 58027 .......... .......... .......... .......... .......... .......... 456 AAGAATCTGC CACTTTGTTG TTTTCTATAA ATCTATAGAC GATTCTGAAA TTACTAGCCG 58087 .......... .......... .......... .......... .......... .......... 456 AGAATTTGGA TGAAATGAAG CTCCACCATG AGTCTAGGTA TCGGCAATTC TTGGGGCTTT 58147 .......... .......... .......... .......... .......... .......... 456 TTTATTTTCA TTGAAGCGAT TATTTGACTG TTTAGTGATT CGAGAACCAG AAGATCATTT 58207 .......... .......... .......... .......... .......... .......... 456 TGCCTAGTAA AGCTCATCAA CTCTTCTTTT TGCTCGTTGT GACTTCTTAA GGATGATTCT 58267 .......... .......... .......... .......... .......... .......... 456 TTCTACCATG TAAGCTGTTG CACTTGCGCC TATTTGCCAC CTTTGGGGTG TTTAAGATGA 58327 .......... .......... .......... .......... .......... .......... 456 ATGATAAACG GTGACAAGTG ATGGATAGTC TCCGGTTACG ACCATCCACC TCCAGCCATA 58387 .......... .......... .......... .......... .......... .......... 456 ACGTTGGGGG TTAACCTCAC CAAGGGAGCG AAGTGGAGAA GGATCACCGT TGTTGTGCTC 58447 .......... .......... .......... .......... .......... .......... 456 TTGAGCCAGG GGAAACTGAG GTTACGGTTT ACTGTGTCCA AAAAATAAAA TAAAAGGTTT 58507 .......... .......... .......... .......... .......... .......... 456 AAGGATGATA GTGTCTGAGA TAACAGTGTA AATAGTTAGA TAAGCACCTT AAAGTTAGAT 58567 .......... .......... .......... .......... .......... .......... 456 TTTTGTGTTG TCTGTCTTTG TCTCCAGTGA ATACTGAGAA TACATGCAAC AAATAAATCT 58627 .......... .......... .......... .......... .......... .......... 456 TGCAATCACC GTCGTTAAGC TGGTCATATT GTATTAAACT AATTCCCGAA CAGCTTTTGG 58687 ||||||| .......... .......... .......... .......... .......... ...CTTTTGG 463 TTCCTCTTAT AACTGCATTC AGATATGAAG GAGATGAGGT GAACATGACA TTAGCAAGAA 58747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTCTTAT AACTGCATTC AGATATGAAG GAGATGAGGT GAACATGACA TTAGCAAGAA 523 AGGAAGCAAA TATACTGCAT GAGAAGATCT CTGACAAGGC TTACAATGAC GAGGAGAT 58805 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AGGAAGCAAA TATACTGCAT GAGAAGATCT CTGACAAGGC TTACAATGAC GAGGAGAT 581 hqPGS_C04HBa0077O05.1+_SGN-E245809+ (55988 56078,57338 57483,57693 57911,58681 58805) ******************************************************************************** EST sequence 105 +strand 512 n (File: SGN-E276455+) 1 GAAAGGGAAA AAAAATGTCT AGTCTTAAAG TTCCAGCATC AGTTCCAGAT CCTTATGAAG 61 ATGCTGAGCA ACTCAAAAAA GCTTTTAAAG GATGGGGCAC AAATGAGGAA CTTATTATTC 121 AGATTCTGGC TCATAGGAAT GCAGCACAAC GCAAGTTAAT CCGAGATTCT TATGCTGCTG 181 CTTATGGAGA GGATCTTCTC AAGGACTTGG ATTCTGAACT GACAAGTGAT TTTCAGCGTG 241 TGGTGCTTCT CTGGACTTTG AGTCCTGCTG AGCGCGACGC CTACTTGGTT AATGAGGCTA 301 CCAAACGTCT GACTGCTAGC AATTGGGTTA TCATGGAAAT TGCTTGTACC AGGTCTTCTG 361 ATGATCTTTT TAAGGCGAGG CAGGCCTACC ATGCTCGATA CAAGAAATCA CTTGAAGAAG 421 ATGTTGCTTA TCATACAAGT GGGGATTTCC GTAAGCTTTT GGTTCCTCTT ATAACTGCAT 481 TCAGATATGA AGGAGATGAG GTGAACATGA CA Predicted gene structure (within gDNA segment 55389 to 59347): Exon 1 55989 56078 ( 90 n); cDNA 1 90 ( 90 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 91 236 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 237 455 ( 219 n); score: 1.000 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 1.00) Exon 4 58681 58737 ( 57 n); cDNA 456 512 ( 57 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E276455+ 1.000 512 1.000 C PGS_C04HBa0077O05.1+_SGN-E276455+ (55989 56078,57338 57483,57693 57911,58681 58737) Alignment (genomic DNA sequence = upper lines): GAAAGGGAAA AAAAATGTCT AGTCTTAAAG TTCCAGCATC AGTTCCAGAT CCTTATGAAG 56048 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGGGAAA AAAAATGTCT AGTCTTAAAG TTCCAGCATC AGTTCCAGAT CCTTATGAAG 60 ATGCTGAGCA ACTCAAAAAA GCTTTTAAAG GTTTCACTTT TTTTTTCTTC CAGATCCCCT 56108 |||||||||| |||||||||| |||||||||| ATGCTGAGCA ACTCAAAAAA GCTTTTAAAG .......... .......... .......... 90 TTGGTTGGAT TTTGTATGCC TGATTTTAGT GCAAGATTTC TTTTCTATAT TTGCATTTGC 56168 .......... .......... .......... .......... .......... .......... 90 TATTTTTCTT GAATGATCAG TTGATTTTTA CTTTTCCTTA CTGTTTTTTC CTAGTTTAGT 56228 .......... .......... .......... .......... .......... .......... 90 TTAGTTTTAG TTCTTGATGG GGTTCTTGTG ATCTGAATGA TCTATTCAAA ATTGTTTCGA 56288 .......... .......... .......... .......... .......... .......... 90 AATGTAACAT AGACCATCTG CTGACTCTAA ATCTTGAATC TGTCTCGGTT AGGTAAAATG 56348 .......... .......... .......... .......... .......... .......... 90 CTGTGTGATT TTTTATTTAA TTCATTGTTG GAGGAAATTA GTGATCTTTG ACTGTAGGCA 56408 .......... .......... .......... .......... .......... .......... 90 TATGTAGAAG ACATTTTTCT TTATGATTCT GTGTAGTCAT TTCCCAAACG TATGATTGGT 56468 .......... .......... .......... .......... .......... .......... 90 CTAGATTATT AATTTGTTGA CAAAAATGAT TAACTCCAAT TCTCCGTGGT GGTTAGGCTG 56528 .......... .......... .......... .......... .......... .......... 90 ATTATGATGT ATGGGGCGAG TGGAGTGTTG GTTAGTTAAG AATTCTAATG TCAAAAGATA 56588 .......... .......... .......... .......... .......... .......... 90 TGAGGTGGCG AAAATGAGGA CGCTGAGGTG GATGTGGATA TGTAGGAGAG ATAAAGATTA 56648 .......... .......... .......... .......... .......... .......... 90 AGAATGAAGA TATCCAACAT AACGTGGGAG TGGCTTCCGT GATGGACAAG ATGAGGGAAG 56708 .......... .......... .......... .......... .......... .......... 90 TGAGACTGAG ATGGTTTAGA CATGATATGT GAAGAGGAGG TGCACAGCGA TCTAGGGAGA 56768 .......... .......... .......... .......... .......... .......... 90 AATGTTAGAG GTTGGCCGTA GTGAGTTTTA GGAGACGTAG AGGGAAACCA AAAAAGTGTT 56828 .......... .......... .......... .......... .......... .......... 90 GGGAGGGGTG ATTAGACAAA ACATGACGCA ACTTCAGCTT TCCGATGATA TGATTCTAGA 56888 .......... .......... .......... .......... .......... .......... 90 TTGAAGGTTA TGGAGGTCAC GGATTAGGGT AGAAGGTTAG TAAATAGTTG AATGTTGTCT 56948 .......... .......... .......... .......... .......... .......... 90 CGTTTCCAAG GGGATAGCTT GGTGGTAGTT TTGTTTCATT GTACCTATTT CCCCAGTAAT 57008 .......... .......... .......... .......... .......... .......... 90 ACAAGTAGTA GTAGCATTTT CTCATAGTTG TCTGTCTTGC AATTTTTGTT GCTCGTTATT 57068 .......... .......... .......... .......... .......... .......... 90 TACTGTGCTT CTGTTATCAC ATTAGTTGGT TATTGTTATT GCTCTTGTTT TTTGAATGCT 57128 .......... .......... .......... .......... .......... .......... 90 CTAGGTTATG CTTTCCCTTT AATTTTCAAT GTCCTGTTAC TCTGTTGTGT GTTTTGGGAA 57188 .......... .......... .......... .......... .......... .......... 90 CAGCCTATCT ACCTCCACGA GGTAGGGTTT AGGTTCCTCC CCAGACCCCG ACTATGGGAC 57248 .......... .......... .......... .......... .......... .......... 90 TACATCGAGT TTGCTGTTGT TGTTTGGGCT TGCAAAGCAG GAAGCTGAAT TTTGTTTTCC 57308 .......... .......... .......... .......... .......... .......... 90 ACAGAAGACT CATGGTTAAA CGTTTGCAGG ATGGGGCACA AATGAGGAAC TTATTATTCA 57368 | |||||||||| |||||||||| |||||||||| .......... .......... .........G ATGGGGCACA AATGAGGAAC TTATTATTCA 121 GATTCTGGCT CATAGGAATG CAGCACAACG CAAGTTAATC CGAGATTCTT ATGCTGCTGC 57428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCTGGCT CATAGGAATG CAGCACAACG CAAGTTAATC CGAGATTCTT ATGCTGCTGC 181 TTATGGAGAG GATCTTCTCA AGGACTTGGA TTCTGAACTG ACAAGTGATT TTCAGGTTAA 57488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTATGGAGAG GATCTTCTCA AGGACTTGGA TTCTGAACTG ACAAGTGATT TTCAG..... 236 TTAATCTCAA TTTTCCATTC TTGTTCCAAA TTGTGTTGGA GTACACCCCG TTTAATCAAT 57548 .......... .......... .......... .......... .......... .......... 236 CATTGTGGTG TATTGAATGT TTTTCTTTTT GTTCATTTAT ACTTTCTTAG ATTTGTCTAG 57608 .......... .......... .......... .......... .......... .......... 236 TCCATATCTA CATTATTAAT CACAGGTAAC ATTAGCCAAG GATTGCTTTG ACTAATATAT 57668 .......... .......... .......... .......... .......... .......... 236 AATTTGATTC ACATGATATT GCAGCGTGTG GTGCTTCTCT GGACTTTGAG TCCTGCTGAG 57728 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....CGTGTG GTGCTTCTCT GGACTTTGAG TCCTGCTGAG 272 CGCGACGCCT ACTTGGTTAA TGAGGCTACC AAACGTCTGA CTGCTAGCAA TTGGGTTATC 57788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCGACGCCT ACTTGGTTAA TGAGGCTACC AAACGTCTGA CTGCTAGCAA TTGGGTTATC 332 ATGGAAATTG CTTGTACCAG GTCTTCTGAT GATCTTTTTA AGGCGAGGCA GGCCTACCAT 57848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGAAATTG CTTGTACCAG GTCTTCTGAT GATCTTTTTA AGGCGAGGCA GGCCTACCAT 392 GCTCGATACA AGAAATCACT TGAAGAAGAT GTTGCTTATC ATACAAGTGG GGATTTCCGT 57908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCGATACA AGAAATCACT TGAAGAAGAT GTTGCTTATC ATACAAGTGG GGATTTCCGT 452 AAGGTACTTC GCATATAAGA TCTACTGTGC CACATTTAAT TCATTGTTAT TCTAGTGCCA 57968 ||| AAG....... .......... .......... .......... .......... .......... 455 GTCAACTTTG TCATTAGATC AGCTGTAGAG AAAAACCTAT AGTCAGCCGA AGTTTGCTAA 58028 .......... .......... .......... .......... .......... .......... 455 AGAATCTGCC ACTTTGTTGT TTTCTATAAA TCTATAGACG ATTCTGAAAT TACTAGCCGA 58088 .......... .......... .......... .......... .......... .......... 455 GAATTTGGAT GAAATGAAGC TCCACCATGA GTCTAGGTAT CGGCAATTCT TGGGGCTTTT 58148 .......... .......... .......... .......... .......... .......... 455 TTATTTTCAT TGAAGCGATT ATTTGACTGT TTAGTGATTC GAGAACCAGA AGATCATTTT 58208 .......... .......... .......... .......... .......... .......... 455 GCCTAGTAAA GCTCATCAAC TCTTCTTTTT GCTCGTTGTG ACTTCTTAAG GATGATTCTT 58268 .......... .......... .......... .......... .......... .......... 455 TCTACCATGT AAGCTGTTGC ACTTGCGCCT ATTTGCCACC TTTGGGGTGT TTAAGATGAA 58328 .......... .......... .......... .......... .......... .......... 455 TGATAAACGG TGACAAGTGA TGGATAGTCT CCGGTTACGA CCATCCACCT CCAGCCATAA 58388 .......... .......... .......... .......... .......... .......... 455 CGTTGGGGGT TAACCTCACC AAGGGAGCGA AGTGGAGAAG GATCACCGTT GTTGTGCTCT 58448 .......... .......... .......... .......... .......... .......... 455 TGAGCCAGGG GAAACTGAGG TTACGGTTTA CTGTGTCCAA AAAATAAAAT AAAAGGTTTA 58508 .......... .......... .......... .......... .......... .......... 455 AGGATGATAG TGTCTGAGAT AACAGTGTAA ATAGTTAGAT AAGCACCTTA AAGTTAGATT 58568 .......... .......... .......... .......... .......... .......... 455 TTTGTGTTGT CTGTCTTTGT CTCCAGTGAA TACTGAGAAT ACATGCAACA AATAAATCTT 58628 .......... .......... .......... .......... .......... .......... 455 GCAATCACCG TCGTTAAGCT GGTCATATTG TATTAAACTA ATTCCCGAAC AGCTTTTGGT 58688 |||||||| .......... .......... .......... .......... .......... ..CTTTTGGT 463 TCCTCTTATA ACTGCATTCA GATATGAAGG AGATGAGGTG AACATGACA 58737 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCCTCTTATA ACTGCATTCA GATATGAAGG AGATGAGGTG AACATGACA 512 hqPGS_C04HBa0077O05.1+_SGN-E276455+ (55989 56078,57338 57483,57693 57911,58681 58737) ******************************************************************************** EST sequence 7 +strand 233 n (File: SGN-E239993+) 1 AAGGGAAAAA AAACGTCTAG TCTTAAAGAT CCAGCATCAG TTCCAGATCC TTATGAAGAT 61 GCTGAGCAAC TCAAAAAAGC TTTTAAAGGA TGGGGCACAA ATGAGGAACT TATTATTCAG 121 ATTCTGGCTC ATAGGAATGC AGCACAACGC AAGTTAATCC GAGATTCTTA TGCTGCTGCT 181 TATGGAGAGG ATCTTCTCAA GGACTTGGAT TCTGAACTGA CAAGTGATTT TCA Predicted gene structure (within gDNA segment 55130 to 58092): Exon 1 55991 56078 ( 88 n); cDNA 1 88 ( 88 n); score: 0.977 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57482 ( 145 n); cDNA 89 233 ( 145 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E239993+ 0.991 233 1.000 C PGS_C04HBa0077O05.1+_SGN-E239993+ (55991 56078,57338 57482) Alignment (genomic DNA sequence = upper lines): AAGGGAAAAA AAATGTCTAG TCTTAAAGTT CCAGCATCAG TTCCAGATCC TTATGAAGAT 56050 |||||||||| ||| |||||| |||||||| | |||||||||| |||||||||| |||||||||| AAGGGAAAAA AAACGTCTAG TCTTAAAGAT CCAGCATCAG TTCCAGATCC TTATGAAGAT 60 GCTGAGCAAC TCAAAAAAGC TTTTAAAGGT TTCACTTTTT TTTTCTTCCA GATCCCCTTT 56110 |||||||||| |||||||||| |||||||| GCTGAGCAAC TCAAAAAAGC TTTTAAAG.. .......... .......... .......... 88 GGTTGGATTT TGTATGCCTG ATTTTAGTGC AAGATTTCTT TTCTATATTT GCATTTGCTA 56170 .......... .......... .......... .......... .......... .......... 88 TTTTTCTTGA ATGATCAGTT GATTTTTACT TTTCCTTACT GTTTTTTCCT AGTTTAGTTT 56230 .......... .......... .......... .......... .......... .......... 88 AGTTTTAGTT CTTGATGGGG TTCTTGTGAT CTGAATGATC TATTCAAAAT TGTTTCGAAA 56290 .......... .......... .......... .......... .......... .......... 88 TGTAACATAG ACCATCTGCT GACTCTAAAT CTTGAATCTG TCTCGGTTAG GTAAAATGCT 56350 .......... .......... .......... .......... .......... .......... 88 GTGTGATTTT TTATTTAATT CATTGTTGGA GGAAATTAGT GATCTTTGAC TGTAGGCATA 56410 .......... .......... .......... .......... .......... .......... 88 TGTAGAAGAC ATTTTTCTTT ATGATTCTGT GTAGTCATTT CCCAAACGTA TGATTGGTCT 56470 .......... .......... .......... .......... .......... .......... 88 AGATTATTAA TTTGTTGACA AAAATGATTA ACTCCAATTC TCCGTGGTGG TTAGGCTGAT 56530 .......... .......... .......... .......... .......... .......... 88 TATGATGTAT GGGGCGAGTG GAGTGTTGGT TAGTTAAGAA TTCTAATGTC AAAAGATATG 56590 .......... .......... .......... .......... .......... .......... 88 AGGTGGCGAA AATGAGGACG CTGAGGTGGA TGTGGATATG TAGGAGAGAT AAAGATTAAG 56650 .......... .......... .......... .......... .......... .......... 88 AATGAAGATA TCCAACATAA CGTGGGAGTG GCTTCCGTGA TGGACAAGAT GAGGGAAGTG 56710 .......... .......... .......... .......... .......... .......... 88 AGACTGAGAT GGTTTAGACA TGATATGTGA AGAGGAGGTG CACAGCGATC TAGGGAGAAA 56770 .......... .......... .......... .......... .......... .......... 88 TGTTAGAGGT TGGCCGTAGT GAGTTTTAGG AGACGTAGAG GGAAACCAAA AAAGTGTTGG 56830 .......... .......... .......... .......... .......... .......... 88 GAGGGGTGAT TAGACAAAAC ATGACGCAAC TTCAGCTTTC CGATGATATG ATTCTAGATT 56890 .......... .......... .......... .......... .......... .......... 88 GAAGGTTATG GAGGTCACGG ATTAGGGTAG AAGGTTAGTA AATAGTTGAA TGTTGTCTCG 56950 .......... .......... .......... .......... .......... .......... 88 TTTCCAAGGG GATAGCTTGG TGGTAGTTTT GTTTCATTGT ACCTATTTCC CCAGTAATAC 57010 .......... .......... .......... .......... .......... .......... 88 AAGTAGTAGT AGCATTTTCT CATAGTTGTC TGTCTTGCAA TTTTTGTTGC TCGTTATTTA 57070 .......... .......... .......... .......... .......... .......... 88 CTGTGCTTCT GTTATCACAT TAGTTGGTTA TTGTTATTGC TCTTGTTTTT TGAATGCTCT 57130 .......... .......... .......... .......... .......... .......... 88 AGGTTATGCT TTCCCTTTAA TTTTCAATGT CCTGTTACTC TGTTGTGTGT TTTGGGAACA 57190 .......... .......... .......... .......... .......... .......... 88 GCCTATCTAC CTCCACGAGG TAGGGTTTAG GTTCCTCCCC AGACCCCGAC TATGGGACTA 57250 .......... .......... .......... .......... .......... .......... 88 CATCGAGTTT GCTGTTGTTG TTTGGGCTTG CAAAGCAGGA AGCTGAATTT TGTTTTCCAC 57310 .......... .......... .......... .......... .......... .......... 88 AGAAGACTCA TGGTTAAACG TTTGCAGGAT GGGGCACAAA TGAGGAACTT ATTATTCAGA 57370 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GAT GGGGCACAAA TGAGGAACTT ATTATTCAGA 121 TTCTGGCTCA TAGGAATGCA GCACAACGCA AGTTAATCCG AGATTCTTAT GCTGCTGCTT 57430 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGGCTCA TAGGAATGCA GCACAACGCA AGTTAATCCG AGATTCTTAT GCTGCTGCTT 181 ATGGAGAGGA TCTTCTCAAG GACTTGGATT CTGAACTGAC AAGTGATTTT CA 57482 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ATGGAGAGGA TCTTCTCAAG GACTTGGATT CTGAACTGAC AAGTGATTTT CA 233 hqPGS_C04HBa0077O05.1+_SGN-E239993+ (55991 56078,57338 57482) ******************************************************************************** EST sequence 25 +strand 364 n (File: SGN-E305656+) 1 GAAAAAAAAT GTCTAGTCTT AAAGTTCCAG CATCAGTTCC AGATCCTTAT GAAGATGCTG 61 AGCAACTCAA AAAAGCTTTT AAAGGATGGG GCACAAATGA GGAACTTATT ATTCAGATTC 121 TGGCTCATAG GAATGCAGCA CAACGCAAGT TAATCCGAGA TTCTTATGCT GCTGCTTATG 181 GAGAGGATCT TCTCAAGGAC TTGGATTCTG AACTGACAAG TGATTTTCAG CGTGTGGTGC 241 TTCTCTGGAC TTTGAGTCCT GCTGAGCGCG ACGCCTACTT GGTTAATGAG GCTACCAAAC 301 GTCTGACTGC TAGCAATTGG GTTATCATGG AAATTGCTTG TACCAGGTCT TCTGATGATC 361 TTTT Predicted gene structure (within gDNA segment 55395 to 58436): Exon 1 55995 56078 ( 84 n); cDNA 1 84 ( 84 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 85 230 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57826 ( 134 n); cDNA 231 364 ( 134 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E305656+ 1.000 364 1.000 C PGS_C04HBa0077O05.1+_SGN-E305656+ (55995 56078,57338 57483,57693 57826) Alignment (genomic DNA sequence = upper lines): GAAAAAAAAT GTCTAGTCTT AAAGTTCCAG CATCAGTTCC AGATCCTTAT GAAGATGCTG 56054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAAAAAT GTCTAGTCTT AAAGTTCCAG CATCAGTTCC AGATCCTTAT GAAGATGCTG 60 AGCAACTCAA AAAAGCTTTT AAAGGTTTCA CTTTTTTTTT CTTCCAGATC CCCTTTGGTT 56114 |||||||||| |||||||||| |||| AGCAACTCAA AAAAGCTTTT AAAG...... .......... .......... .......... 84 GGATTTTGTA TGCCTGATTT TAGTGCAAGA TTTCTTTTCT ATATTTGCAT TTGCTATTTT 56174 .......... .......... .......... .......... .......... .......... 84 TCTTGAATGA TCAGTTGATT TTTACTTTTC CTTACTGTTT TTTCCTAGTT TAGTTTAGTT 56234 .......... .......... .......... .......... .......... .......... 84 TTAGTTCTTG ATGGGGTTCT TGTGATCTGA ATGATCTATT CAAAATTGTT TCGAAATGTA 56294 .......... .......... .......... .......... .......... .......... 84 ACATAGACCA TCTGCTGACT CTAAATCTTG AATCTGTCTC GGTTAGGTAA AATGCTGTGT 56354 .......... .......... .......... .......... .......... .......... 84 GATTTTTTAT TTAATTCATT GTTGGAGGAA ATTAGTGATC TTTGACTGTA GGCATATGTA 56414 .......... .......... .......... .......... .......... .......... 84 GAAGACATTT TTCTTTATGA TTCTGTGTAG TCATTTCCCA AACGTATGAT TGGTCTAGAT 56474 .......... .......... .......... .......... .......... .......... 84 TATTAATTTG TTGACAAAAA TGATTAACTC CAATTCTCCG TGGTGGTTAG GCTGATTATG 56534 .......... .......... .......... .......... .......... .......... 84 ATGTATGGGG CGAGTGGAGT GTTGGTTAGT TAAGAATTCT AATGTCAAAA GATATGAGGT 56594 .......... .......... .......... .......... .......... .......... 84 GGCGAAAATG AGGACGCTGA GGTGGATGTG GATATGTAGG AGAGATAAAG ATTAAGAATG 56654 .......... .......... .......... .......... .......... .......... 84 AAGATATCCA ACATAACGTG GGAGTGGCTT CCGTGATGGA CAAGATGAGG GAAGTGAGAC 56714 .......... .......... .......... .......... .......... .......... 84 TGAGATGGTT TAGACATGAT ATGTGAAGAG GAGGTGCACA GCGATCTAGG GAGAAATGTT 56774 .......... .......... .......... .......... .......... .......... 84 AGAGGTTGGC CGTAGTGAGT TTTAGGAGAC GTAGAGGGAA ACCAAAAAAG TGTTGGGAGG 56834 .......... .......... .......... .......... .......... .......... 84 GGTGATTAGA CAAAACATGA CGCAACTTCA GCTTTCCGAT GATATGATTC TAGATTGAAG 56894 .......... .......... .......... .......... .......... .......... 84 GTTATGGAGG TCACGGATTA GGGTAGAAGG TTAGTAAATA GTTGAATGTT GTCTCGTTTC 56954 .......... .......... .......... .......... .......... .......... 84 CAAGGGGATA GCTTGGTGGT AGTTTTGTTT CATTGTACCT ATTTCCCCAG TAATACAAGT 57014 .......... .......... .......... .......... .......... .......... 84 AGTAGTAGCA TTTTCTCATA GTTGTCTGTC TTGCAATTTT TGTTGCTCGT TATTTACTGT 57074 .......... .......... .......... .......... .......... .......... 84 GCTTCTGTTA TCACATTAGT TGGTTATTGT TATTGCTCTT GTTTTTTGAA TGCTCTAGGT 57134 .......... .......... .......... .......... .......... .......... 84 TATGCTTTCC CTTTAATTTT CAATGTCCTG TTACTCTGTT GTGTGTTTTG GGAACAGCCT 57194 .......... .......... .......... .......... .......... .......... 84 ATCTACCTCC ACGAGGTAGG GTTTAGGTTC CTCCCCAGAC CCCGACTATG GGACTACATC 57254 .......... .......... .......... .......... .......... .......... 84 GAGTTTGCTG TTGTTGTTTG GGCTTGCAAA GCAGGAAGCT GAATTTTGTT TTCCACAGAA 57314 .......... .......... .......... .......... .......... .......... 84 GACTCATGGT TAAACGTTTG CAGGATGGGG CACAAATGAG GAACTTATTA TTCAGATTCT 57374 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GATGGGG CACAAATGAG GAACTTATTA TTCAGATTCT 121 GGCTCATAGG AATGCAGCAC AACGCAAGTT AATCCGAGAT TCTTATGCTG CTGCTTATGG 57434 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTCATAGG AATGCAGCAC AACGCAAGTT AATCCGAGAT TCTTATGCTG CTGCTTATGG 181 AGAGGATCTT CTCAAGGACT TGGATTCTGA ACTGACAAGT GATTTTCAGG TTAATTAATC 57494 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AGAGGATCTT CTCAAGGACT TGGATTCTGA ACTGACAAGT GATTTTCAG. .......... 230 TCAATTTTCC ATTCTTGTTC CAAATTGTGT TGGAGTACAC CCCGTTTAAT CAATCATTGT 57554 .......... .......... .......... .......... .......... .......... 230 GGTGTATTGA ATGTTTTTCT TTTTGTTCAT TTATACTTTC TTAGATTTGT CTAGTCCATA 57614 .......... .......... .......... .......... .......... .......... 230 TCTACATTAT TAATCACAGG TAACATTAGC CAAGGATTGC TTTGACTAAT ATATAATTTG 57674 .......... .......... .......... .......... .......... .......... 230 ATTCACATGA TATTGCAGCG TGTGGTGCTT CTCTGGACTT TGAGTCCTGC TGAGCGCGAC 57734 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........CG TGTGGTGCTT CTCTGGACTT TGAGTCCTGC TGAGCGCGAC 272 GCCTACTTGG TTAATGAGGC TACCAAACGT CTGACTGCTA GCAATTGGGT TATCATGGAA 57794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTACTTGG TTAATGAGGC TACCAAACGT CTGACTGCTA GCAATTGGGT TATCATGGAA 332 ATTGCTTGTA CCAGGTCTTC TGATGATCTT TT 57826 |||||||||| |||||||||| |||||||||| || ATTGCTTGTA CCAGGTCTTC TGATGATCTT TT 364 hqPGS_C04HBa0077O05.1+_SGN-E305656+ (55995 56078,57338 57483,57693 57826) ******************************************************************************** EST sequence 20 +strand 362 n (File: SGN-E337494+) 1 AAAAAATGTC TAGTCTTAAA GTTCCAGCAT CAGTTCCAGA TCCTTATGAA GATGCTGAGC 61 AACTCAAAAA AGCTTTTAAA GGATGGGGCA CAAATGAGGA ACTTATTATT CAGATTCTGG 121 CTCATAGGAA TGCAGCACAA CGCAAGTTAA TCCGAGATTC TTATGCTGCT GCTTATGGAG 181 AGGATCTTCT CAAGGACTTG GATTCTGAAC TGACAAGTGA TTTTCAGCGT GTGGTGCTTC 241 TCTGGACTTT GAGTCCTGCT GAGCGCGACG CCTACTTGGT TAATGAGGCT ACCAAACGTC 301 TGACTGCTAG CAATTGGGTT ATCATGGAAA TTGCTTGTAC CAGGTCTTCT GATGATCTTT 361 TT Predicted gene structure (within gDNA segment 55398 to 58437): Exon 1 55998 56078 ( 81 n); cDNA 1 81 ( 81 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 82 227 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57827 ( 135 n); cDNA 228 362 ( 135 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E337494+ 1.000 362 1.000 C PGS_C04HBa0077O05.1+_SGN-E337494+ (55998 56078,57338 57483,57693 57827) Alignment (genomic DNA sequence = upper lines): AAAAAATGTC TAGTCTTAAA GTTCCAGCAT CAGTTCCAGA TCCTTATGAA GATGCTGAGC 56057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAATGTC TAGTCTTAAA GTTCCAGCAT CAGTTCCAGA TCCTTATGAA GATGCTGAGC 60 AACTCAAAAA AGCTTTTAAA GGTTTCACTT TTTTTTTCTT CCAGATCCCC TTTGGTTGGA 56117 |||||||||| |||||||||| | AACTCAAAAA AGCTTTTAAA G......... .......... .......... .......... 81 TTTTGTATGC CTGATTTTAG TGCAAGATTT CTTTTCTATA TTTGCATTTG CTATTTTTCT 56177 .......... .......... .......... .......... .......... .......... 81 TGAATGATCA GTTGATTTTT ACTTTTCCTT ACTGTTTTTT CCTAGTTTAG TTTAGTTTTA 56237 .......... .......... .......... .......... .......... .......... 81 GTTCTTGATG GGGTTCTTGT GATCTGAATG ATCTATTCAA AATTGTTTCG AAATGTAACA 56297 .......... .......... .......... .......... .......... .......... 81 TAGACCATCT GCTGACTCTA AATCTTGAAT CTGTCTCGGT TAGGTAAAAT GCTGTGTGAT 56357 .......... .......... .......... .......... .......... .......... 81 TTTTTATTTA ATTCATTGTT GGAGGAAATT AGTGATCTTT GACTGTAGGC ATATGTAGAA 56417 .......... .......... .......... .......... .......... .......... 81 GACATTTTTC TTTATGATTC TGTGTAGTCA TTTCCCAAAC GTATGATTGG TCTAGATTAT 56477 .......... .......... .......... .......... .......... .......... 81 TAATTTGTTG ACAAAAATGA TTAACTCCAA TTCTCCGTGG TGGTTAGGCT GATTATGATG 56537 .......... .......... .......... .......... .......... .......... 81 TATGGGGCGA GTGGAGTGTT GGTTAGTTAA GAATTCTAAT GTCAAAAGAT ATGAGGTGGC 56597 .......... .......... .......... .......... .......... .......... 81 GAAAATGAGG ACGCTGAGGT GGATGTGGAT ATGTAGGAGA GATAAAGATT AAGAATGAAG 56657 .......... .......... .......... .......... .......... .......... 81 ATATCCAACA TAACGTGGGA GTGGCTTCCG TGATGGACAA GATGAGGGAA GTGAGACTGA 56717 .......... .......... .......... .......... .......... .......... 81 GATGGTTTAG ACATGATATG TGAAGAGGAG GTGCACAGCG ATCTAGGGAG AAATGTTAGA 56777 .......... .......... .......... .......... .......... .......... 81 GGTTGGCCGT AGTGAGTTTT AGGAGACGTA GAGGGAAACC AAAAAAGTGT TGGGAGGGGT 56837 .......... .......... .......... .......... .......... .......... 81 GATTAGACAA AACATGACGC AACTTCAGCT TTCCGATGAT ATGATTCTAG ATTGAAGGTT 56897 .......... .......... .......... .......... .......... .......... 81 ATGGAGGTCA CGGATTAGGG TAGAAGGTTA GTAAATAGTT GAATGTTGTC TCGTTTCCAA 56957 .......... .......... .......... .......... .......... .......... 81 GGGGATAGCT TGGTGGTAGT TTTGTTTCAT TGTACCTATT TCCCCAGTAA TACAAGTAGT 57017 .......... .......... .......... .......... .......... .......... 81 AGTAGCATTT TCTCATAGTT GTCTGTCTTG CAATTTTTGT TGCTCGTTAT TTACTGTGCT 57077 .......... .......... .......... .......... .......... .......... 81 TCTGTTATCA CATTAGTTGG TTATTGTTAT TGCTCTTGTT TTTTGAATGC TCTAGGTTAT 57137 .......... .......... .......... .......... .......... .......... 81 GCTTTCCCTT TAATTTTCAA TGTCCTGTTA CTCTGTTGTG TGTTTTGGGA ACAGCCTATC 57197 .......... .......... .......... .......... .......... .......... 81 TACCTCCACG AGGTAGGGTT TAGGTTCCTC CCCAGACCCC GACTATGGGA CTACATCGAG 57257 .......... .......... .......... .......... .......... .......... 81 TTTGCTGTTG TTGTTTGGGC TTGCAAAGCA GGAAGCTGAA TTTTGTTTTC CACAGAAGAC 57317 .......... .......... .......... .......... .......... .......... 81 TCATGGTTAA ACGTTTGCAG GATGGGGCAC AAATGAGGAA CTTATTATTC AGATTCTGGC 57377 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GATGGGGCAC AAATGAGGAA CTTATTATTC AGATTCTGGC 121 TCATAGGAAT GCAGCACAAC GCAAGTTAAT CCGAGATTCT TATGCTGCTG CTTATGGAGA 57437 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATAGGAAT GCAGCACAAC GCAAGTTAAT CCGAGATTCT TATGCTGCTG CTTATGGAGA 181 GGATCTTCTC AAGGACTTGG ATTCTGAACT GACAAGTGAT TTTCAGGTTA ATTAATCTCA 57497 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGATCTTCTC AAGGACTTGG ATTCTGAACT GACAAGTGAT TTTCAG.... .......... 227 ATTTTCCATT CTTGTTCCAA ATTGTGTTGG AGTACACCCC GTTTAATCAA TCATTGTGGT 57557 .......... .......... .......... .......... .......... .......... 227 GTATTGAATG TTTTTCTTTT TGTTCATTTA TACTTTCTTA GATTTGTCTA GTCCATATCT 57617 .......... .......... .......... .......... .......... .......... 227 ACATTATTAA TCACAGGTAA CATTAGCCAA GGATTGCTTT GACTAATATA TAATTTGATT 57677 .......... .......... .......... .......... .......... .......... 227 CACATGATAT TGCAGCGTGT GGTGCTTCTC TGGACTTTGA GTCCTGCTGA GCGCGACGCC 57737 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....CGTGT GGTGCTTCTC TGGACTTTGA GTCCTGCTGA GCGCGACGCC 272 TACTTGGTTA ATGAGGCTAC CAAACGTCTG ACTGCTAGCA ATTGGGTTAT CATGGAAATT 57797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTGGTTA ATGAGGCTAC CAAACGTCTG ACTGCTAGCA ATTGGGTTAT CATGGAAATT 332 GCTTGTACCA GGTCTTCTGA TGATCTTTTT 57827 |||||||||| |||||||||| |||||||||| GCTTGTACCA GGTCTTCTGA TGATCTTTTT 362 hqPGS_C04HBa0077O05.1+_SGN-E337494+ (55998 56078,57338 57483,57693 57827) ******************************************************************************** EST sequence 9 +strand 579 n (File: SGN-E310310+) 1 ATGTCTAGTC TTAAAGTTCC AGCATCAGTT CCAGATCCTT ATGAAGATGC TGAGCAACTC 61 AAAAAAGCTT TTAAAGGATG GGGCACAAAT GAGGAACTTA TTATTCAGAT TCTGGCTCAT 121 AGGAATGCAG CACAACGCAA GTTAATCCGA GATTCTTATG CTGCTGCTTA TGGAGAGGAT 181 CTTCTCAAGG ACTTGGATTC TGAACTGACA AGTGATTTTC AGCGTGTGGT GCTTCTCTGG 241 ACTTTGAGTC CTGCTGAGCG CGACGCCTAC TTGGTTAATG AGGCTACCAA ACGTCTGACT 301 GCTAGCAATT GGGTTATCAT GGAAATTGCT TGTACCAGGT CTTCTGATGA TCTTTTTAAA 361 GCGAGGCAGG CCTACCATGC TCGATACAAG AAATCACTTG AAGAAGATGT TGCTTATCAT 421 ACAAGTGGGG ATTTCCGTAA GCTTTTGGTT CCTCTTATAA CTGCATTCAG ATATGAAGGA 481 GATGAGGTGA ACATGACATT AGCAAGAAAG GAAGCAAATA TACTGCATGA GAAGATCTCT 541 GACAAGGCTT ACAATGACGA GGAGATCATC CGAATCATT Predicted gene structure (within gDNA segment 55403 to 59428): Exon 1 56003 56078 ( 76 n); cDNA 1 76 ( 76 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 77 222 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 223 441 ( 219 n); score: 0.995 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 1.00) Exon 4 58681 58818 ( 138 n); cDNA 442 579 ( 138 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E310310+ 0.998 579 1.000 C PGS_C04HBa0077O05.1+_SGN-E310310+ (56003 56078,57338 57483,57693 57911,58681 58818) Alignment (genomic DNA sequence = upper lines): ATGTCTAGTC TTAAAGTTCC AGCATCAGTT CCAGATCCTT ATGAAGATGC TGAGCAACTC 56062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTCTAGTC TTAAAGTTCC AGCATCAGTT CCAGATCCTT ATGAAGATGC TGAGCAACTC 60 AAAAAAGCTT TTAAAGGTTT CACTTTTTTT TTCTTCCAGA TCCCCTTTGG TTGGATTTTG 56122 |||||||||| |||||| AAAAAAGCTT TTAAAG.... .......... .......... .......... .......... 76 TATGCCTGAT TTTAGTGCAA GATTTCTTTT CTATATTTGC ATTTGCTATT TTTCTTGAAT 56182 .......... .......... .......... .......... .......... .......... 76 GATCAGTTGA TTTTTACTTT TCCTTACTGT TTTTTCCTAG TTTAGTTTAG TTTTAGTTCT 56242 .......... .......... .......... .......... .......... .......... 76 TGATGGGGTT CTTGTGATCT GAATGATCTA TTCAAAATTG TTTCGAAATG TAACATAGAC 56302 .......... .......... .......... .......... .......... .......... 76 CATCTGCTGA CTCTAAATCT TGAATCTGTC TCGGTTAGGT AAAATGCTGT GTGATTTTTT 56362 .......... .......... .......... .......... .......... .......... 76 ATTTAATTCA TTGTTGGAGG AAATTAGTGA TCTTTGACTG TAGGCATATG TAGAAGACAT 56422 .......... .......... .......... .......... .......... .......... 76 TTTTCTTTAT GATTCTGTGT AGTCATTTCC CAAACGTATG ATTGGTCTAG ATTATTAATT 56482 .......... .......... .......... .......... .......... .......... 76 TGTTGACAAA AATGATTAAC TCCAATTCTC CGTGGTGGTT AGGCTGATTA TGATGTATGG 56542 .......... .......... .......... .......... .......... .......... 76 GGCGAGTGGA GTGTTGGTTA GTTAAGAATT CTAATGTCAA AAGATATGAG GTGGCGAAAA 56602 .......... .......... .......... .......... .......... .......... 76 TGAGGACGCT GAGGTGGATG TGGATATGTA GGAGAGATAA AGATTAAGAA TGAAGATATC 56662 .......... .......... .......... .......... .......... .......... 76 CAACATAACG TGGGAGTGGC TTCCGTGATG GACAAGATGA GGGAAGTGAG ACTGAGATGG 56722 .......... .......... .......... .......... .......... .......... 76 TTTAGACATG ATATGTGAAG AGGAGGTGCA CAGCGATCTA GGGAGAAATG TTAGAGGTTG 56782 .......... .......... .......... .......... .......... .......... 76 GCCGTAGTGA GTTTTAGGAG ACGTAGAGGG AAACCAAAAA AGTGTTGGGA GGGGTGATTA 56842 .......... .......... .......... .......... .......... .......... 76 GACAAAACAT GACGCAACTT CAGCTTTCCG ATGATATGAT TCTAGATTGA AGGTTATGGA 56902 .......... .......... .......... .......... .......... .......... 76 GGTCACGGAT TAGGGTAGAA GGTTAGTAAA TAGTTGAATG TTGTCTCGTT TCCAAGGGGA 56962 .......... .......... .......... .......... .......... .......... 76 TAGCTTGGTG GTAGTTTTGT TTCATTGTAC CTATTTCCCC AGTAATACAA GTAGTAGTAG 57022 .......... .......... .......... .......... .......... .......... 76 CATTTTCTCA TAGTTGTCTG TCTTGCAATT TTTGTTGCTC GTTATTTACT GTGCTTCTGT 57082 .......... .......... .......... .......... .......... .......... 76 TATCACATTA GTTGGTTATT GTTATTGCTC TTGTTTTTTG AATGCTCTAG GTTATGCTTT 57142 .......... .......... .......... .......... .......... .......... 76 CCCTTTAATT TTCAATGTCC TGTTACTCTG TTGTGTGTTT TGGGAACAGC CTATCTACCT 57202 .......... .......... .......... .......... .......... .......... 76 CCACGAGGTA GGGTTTAGGT TCCTCCCCAG ACCCCGACTA TGGGACTACA TCGAGTTTGC 57262 .......... .......... .......... .......... .......... .......... 76 TGTTGTTGTT TGGGCTTGCA AAGCAGGAAG CTGAATTTTG TTTTCCACAG AAGACTCATG 57322 .......... .......... .......... .......... .......... .......... 76 GTTAAACGTT TGCAGGATGG GGCACAAATG AGGAACTTAT TATTCAGATT CTGGCTCATA 57382 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GATGG GGCACAAATG AGGAACTTAT TATTCAGATT CTGGCTCATA 121 GGAATGCAGC ACAACGCAAG TTAATCCGAG ATTCTTATGC TGCTGCTTAT GGAGAGGATC 57442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATGCAGC ACAACGCAAG TTAATCCGAG ATTCTTATGC TGCTGCTTAT GGAGAGGATC 181 TTCTCAAGGA CTTGGATTCT GAACTGACAA GTGATTTTCA GGTTAATTAA TCTCAATTTT 57502 |||||||||| |||||||||| |||||||||| |||||||||| | TTCTCAAGGA CTTGGATTCT GAACTGACAA GTGATTTTCA G......... .......... 222 CCATTCTTGT TCCAAATTGT GTTGGAGTAC ACCCCGTTTA ATCAATCATT GTGGTGTATT 57562 .......... .......... .......... .......... .......... .......... 222 GAATGTTTTT CTTTTTGTTC ATTTATACTT TCTTAGATTT GTCTAGTCCA TATCTACATT 57622 .......... .......... .......... .......... .......... .......... 222 ATTAATCACA GGTAACATTA GCCAAGGATT GCTTTGACTA ATATATAATT TGATTCACAT 57682 .......... .......... .......... .......... .......... .......... 222 GATATTGCAG CGTGTGGTGC TTCTCTGGAC TTTGAGTCCT GCTGAGCGCG ACGCCTACTT 57742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... CGTGTGGTGC TTCTCTGGAC TTTGAGTCCT GCTGAGCGCG ACGCCTACTT 272 GGTTAATGAG GCTACCAAAC GTCTGACTGC TAGCAATTGG GTTATCATGG AAATTGCTTG 57802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTAATGAG GCTACCAAAC GTCTGACTGC TAGCAATTGG GTTATCATGG AAATTGCTTG 332 TACCAGGTCT TCTGATGATC TTTTTAAGGC GAGGCAGGCC TACCATGCTC GATACAAGAA 57862 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| TACCAGGTCT TCTGATGATC TTTTTAAAGC GAGGCAGGCC TACCATGCTC GATACAAGAA 392 ATCACTTGAA GAAGATGTTG CTTATCATAC AAGTGGGGAT TTCCGTAAGG TACTTCGCAT 57922 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATCACTTGAA GAAGATGTTG CTTATCATAC AAGTGGGGAT TTCCGTAAG. .......... 441 ATAAGATCTA CTGTGCCACA TTTAATTCAT TGTTATTCTA GTGCCAGTCA ACTTTGTCAT 57982 .......... .......... .......... .......... .......... .......... 441 TAGATCAGCT GTAGAGAAAA ACCTATAGTC AGCCGAAGTT TGCTAAAGAA TCTGCCACTT 58042 .......... .......... .......... .......... .......... .......... 441 TGTTGTTTTC TATAAATCTA TAGACGATTC TGAAATTACT AGCCGAGAAT TTGGATGAAA 58102 .......... .......... .......... .......... .......... .......... 441 TGAAGCTCCA CCATGAGTCT AGGTATCGGC AATTCTTGGG GCTTTTTTAT TTTCATTGAA 58162 .......... .......... .......... .......... .......... .......... 441 GCGATTATTT GACTGTTTAG TGATTCGAGA ACCAGAAGAT CATTTTGCCT AGTAAAGCTC 58222 .......... .......... .......... .......... .......... .......... 441 ATCAACTCTT CTTTTTGCTC GTTGTGACTT CTTAAGGATG ATTCTTTCTA CCATGTAAGC 58282 .......... .......... .......... .......... .......... .......... 441 TGTTGCACTT GCGCCTATTT GCCACCTTTG GGGTGTTTAA GATGAATGAT AAACGGTGAC 58342 .......... .......... .......... .......... .......... .......... 441 AAGTGATGGA TAGTCTCCGG TTACGACCAT CCACCTCCAG CCATAACGTT GGGGGTTAAC 58402 .......... .......... .......... .......... .......... .......... 441 CTCACCAAGG GAGCGAAGTG GAGAAGGATC ACCGTTGTTG TGCTCTTGAG CCAGGGGAAA 58462 .......... .......... .......... .......... .......... .......... 441 CTGAGGTTAC GGTTTACTGT GTCCAAAAAA TAAAATAAAA GGTTTAAGGA TGATAGTGTC 58522 .......... .......... .......... .......... .......... .......... 441 TGAGATAACA GTGTAAATAG TTAGATAAGC ACCTTAAAGT TAGATTTTTG TGTTGTCTGT 58582 .......... .......... .......... .......... .......... .......... 441 CTTTGTCTCC AGTGAATACT GAGAATACAT GCAACAAATA AATCTTGCAA TCACCGTCGT 58642 .......... .......... .......... .......... .......... .......... 441 TAAGCTGGTC ATATTGTATT AAACTAATTC CCGAACAGCT TTTGGTTCCT CTTATAACTG 58702 || |||||||||| |||||||||| .......... .......... .......... ........CT TTTGGTTCCT CTTATAACTG 463 CATTCAGATA TGAAGGAGAT GAGGTGAACA TGACATTAGC AAGAAAGGAA GCAAATATAC 58762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTCAGATA TGAAGGAGAT GAGGTGAACA TGACATTAGC AAGAAAGGAA GCAAATATAC 523 TGCATGAGAA GATCTCTGAC AAGGCTTACA ATGACGAGGA GATCATCCGA ATCATT 58818 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TGCATGAGAA GATCTCTGAC AAGGCTTACA ATGACGAGGA GATCATCCGA ATCATT 579 hqPGS_C04HBa0077O05.1+_SGN-E310310+ (56003 56078,57338 57483,57693 57911,58681 58818) ******************************************************************************** EST sequence 53 +strand 345 n (File: SGN-E309538+) 1 AGTCTTAATG TTCCAGCATC AGTTGCGGAT CCTTATGGAG AGGCTGTTCA ACTCAAAAAA 61 GCTTTTAAAG GATGGGGCAC AAATGAGGAA CTTATTATTC AGATTCTGGC TCATAGGAAT 121 GCAGCACAAC GCAAGTTAAT CCGAGATTCT TATGCTGCTG CTTATGGAGA GGATCTTCTC 181 AAGGACTTGG ATTCTGAACT GACAAGTGAT TTTCAGCGTG TGGTGCTTCT CTGGACTTTG 241 AGTCCTGCTG AGCGCGACGC CTACTTGGTT AATGAGGCTA CCAAACGTCT GACTGCTAGC 301 AATTGGGTTA TCATGGAAAT TGCTTGTACC AGGTCTTCTG ATGAT Predicted gene structure (within gDNA segment 55456 to 58431): Exon 1 56009 56078 ( 70 n); cDNA 1 70 ( 70 n); score: 0.900 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 0.88), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 71 216 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57821 ( 129 n); cDNA 217 345 ( 129 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E309538+ 0.980 345 1.000 C PGS_C04HBa0077O05.1+_SGN-E309538+ (56009 56078,57338 57483,57693 57821) Alignment (genomic DNA sequence = upper lines): AGTCTTAAAG TTCCAGCATC AGTTCCAGAT CCTTATGAAG ATGCTGAGCA ACTCAAAAAA 56068 |||||||| | |||||||||| |||| | ||| ||||||| || | |||| || |||||||||| AGTCTTAATG TTCCAGCATC AGTTGCGGAT CCTTATGGAG AGGCTGTTCA ACTCAAAAAA 60 GCTTTTAAAG GTTTCACTTT TTTTTTCTTC CAGATCCCCT TTGGTTGGAT TTTGTATGCC 56128 |||||||||| GCTTTTAAAG .......... .......... .......... .......... .......... 70 TGATTTTAGT GCAAGATTTC TTTTCTATAT TTGCATTTGC TATTTTTCTT GAATGATCAG 56188 .......... .......... .......... .......... .......... .......... 70 TTGATTTTTA CTTTTCCTTA CTGTTTTTTC CTAGTTTAGT TTAGTTTTAG TTCTTGATGG 56248 .......... .......... .......... .......... .......... .......... 70 GGTTCTTGTG ATCTGAATGA TCTATTCAAA ATTGTTTCGA AATGTAACAT AGACCATCTG 56308 .......... .......... .......... .......... .......... .......... 70 CTGACTCTAA ATCTTGAATC TGTCTCGGTT AGGTAAAATG CTGTGTGATT TTTTATTTAA 56368 .......... .......... .......... .......... .......... .......... 70 TTCATTGTTG GAGGAAATTA GTGATCTTTG ACTGTAGGCA TATGTAGAAG ACATTTTTCT 56428 .......... .......... .......... .......... .......... .......... 70 TTATGATTCT GTGTAGTCAT TTCCCAAACG TATGATTGGT CTAGATTATT AATTTGTTGA 56488 .......... .......... .......... .......... .......... .......... 70 CAAAAATGAT TAACTCCAAT TCTCCGTGGT GGTTAGGCTG ATTATGATGT ATGGGGCGAG 56548 .......... .......... .......... .......... .......... .......... 70 TGGAGTGTTG GTTAGTTAAG AATTCTAATG TCAAAAGATA TGAGGTGGCG AAAATGAGGA 56608 .......... .......... .......... .......... .......... .......... 70 CGCTGAGGTG GATGTGGATA TGTAGGAGAG ATAAAGATTA AGAATGAAGA TATCCAACAT 56668 .......... .......... .......... .......... .......... .......... 70 AACGTGGGAG TGGCTTCCGT GATGGACAAG ATGAGGGAAG TGAGACTGAG ATGGTTTAGA 56728 .......... .......... .......... .......... .......... .......... 70 CATGATATGT GAAGAGGAGG TGCACAGCGA TCTAGGGAGA AATGTTAGAG GTTGGCCGTA 56788 .......... .......... .......... .......... .......... .......... 70 GTGAGTTTTA GGAGACGTAG AGGGAAACCA AAAAAGTGTT GGGAGGGGTG ATTAGACAAA 56848 .......... .......... .......... .......... .......... .......... 70 ACATGACGCA ACTTCAGCTT TCCGATGATA TGATTCTAGA TTGAAGGTTA TGGAGGTCAC 56908 .......... .......... .......... .......... .......... .......... 70 GGATTAGGGT AGAAGGTTAG TAAATAGTTG AATGTTGTCT CGTTTCCAAG GGGATAGCTT 56968 .......... .......... .......... .......... .......... .......... 70 GGTGGTAGTT TTGTTTCATT GTACCTATTT CCCCAGTAAT ACAAGTAGTA GTAGCATTTT 57028 .......... .......... .......... .......... .......... .......... 70 CTCATAGTTG TCTGTCTTGC AATTTTTGTT GCTCGTTATT TACTGTGCTT CTGTTATCAC 57088 .......... .......... .......... .......... .......... .......... 70 ATTAGTTGGT TATTGTTATT GCTCTTGTTT TTTGAATGCT CTAGGTTATG CTTTCCCTTT 57148 .......... .......... .......... .......... .......... .......... 70 AATTTTCAAT GTCCTGTTAC TCTGTTGTGT GTTTTGGGAA CAGCCTATCT ACCTCCACGA 57208 .......... .......... .......... .......... .......... .......... 70 GGTAGGGTTT AGGTTCCTCC CCAGACCCCG ACTATGGGAC TACATCGAGT TTGCTGTTGT 57268 .......... .......... .......... .......... .......... .......... 70 TGTTTGGGCT TGCAAAGCAG GAAGCTGAAT TTTGTTTTCC ACAGAAGACT CATGGTTAAA 57328 .......... .......... .......... .......... .......... .......... 70 CGTTTGCAGG ATGGGGCACA AATGAGGAAC TTATTATTCA GATTCTGGCT CATAGGAATG 57388 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G ATGGGGCACA AATGAGGAAC TTATTATTCA GATTCTGGCT CATAGGAATG 121 CAGCACAACG CAAGTTAATC CGAGATTCTT ATGCTGCTGC TTATGGAGAG GATCTTCTCA 57448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCACAACG CAAGTTAATC CGAGATTCTT ATGCTGCTGC TTATGGAGAG GATCTTCTCA 181 AGGACTTGGA TTCTGAACTG ACAAGTGATT TTCAGGTTAA TTAATCTCAA TTTTCCATTC 57508 |||||||||| |||||||||| |||||||||| ||||| AGGACTTGGA TTCTGAACTG ACAAGTGATT TTCAG..... .......... .......... 216 TTGTTCCAAA TTGTGTTGGA GTACACCCCG TTTAATCAAT CATTGTGGTG TATTGAATGT 57568 .......... .......... .......... .......... .......... .......... 216 TTTTCTTTTT GTTCATTTAT ACTTTCTTAG ATTTGTCTAG TCCATATCTA CATTATTAAT 57628 .......... .......... .......... .......... .......... .......... 216 CACAGGTAAC ATTAGCCAAG GATTGCTTTG ACTAATATAT AATTTGATTC ACATGATATT 57688 .......... .......... .......... .......... .......... .......... 216 GCAGCGTGTG GTGCTTCTCT GGACTTTGAG TCCTGCTGAG CGCGACGCCT ACTTGGTTAA 57748 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....CGTGTG GTGCTTCTCT GGACTTTGAG TCCTGCTGAG CGCGACGCCT ACTTGGTTAA 272 TGAGGCTACC AAACGTCTGA CTGCTAGCAA TTGGGTTATC ATGGAAATTG CTTGTACCAG 57808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGCTACC AAACGTCTGA CTGCTAGCAA TTGGGTTATC ATGGAAATTG CTTGTACCAG 332 GTCTTCTGAT GAT 57821 |||||||||| ||| GTCTTCTGAT GAT 345 hqPGS_C04HBa0077O05.1+_SGN-E309538+ (56009 56078,57338 57483,57693 57821) ******************************************************************************** EST sequence 70 +strand 438 n (File: SGN-E324520+) 1 GTCTTAAAGT TCCAGCATCA GTTCCAGATC CTTATGAAGA TGCTGAGCAA CTCAAAAAAG 61 CTTTTAAAGG ATGGGGCACA AATGAGGAAC TTATTATTCA GATTCTGGCT CATAGGAATG 121 CAGCACAACG CAAGTTAATC CGAGATTCTT ATGCTGCTGC TTATGGAGAG GATCTTCTCA 181 AGGACTTGGA TTCTGAACTG ACAAGTGATT TTCAGCGTGT GGTGCTTCTC TGGACTTTGA 241 GTCCTGCTGA GCGCGACGCC TACTTGGTTA ATGAGGCTAC CAAACGTCTG ACTGCTAGCA 301 ATTGGGTTAT CATGGAAATT GCTTGTACCA GGTCTTCTGA TGATCTTTTT AAGGCGAGGC 361 AGGCCTACCA TGCTCGATAC AAGAAATCAC TTGAAGAAGA TGTTGCTTAT CATACAAGTG 421 GGGATTTCCG TAAGCTTT Predicted gene structure (within gDNA segment 55410 to 58561): Exon 1 56010 56078 ( 69 n); cDNA 1 69 ( 69 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 70 215 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 216 434 ( 219 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E324520+ 1.000 434 0.991 C PGS_C04HBa0077O05.1+_SGN-E324520+ (56010 56078,57338 57483,57693 57911) Alignment (genomic DNA sequence = upper lines): GTCTTAAAGT TCCAGCATCA GTTCCAGATC CTTATGAAGA TGCTGAGCAA CTCAAAAAAG 56069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTTAAAGT TCCAGCATCA GTTCCAGATC CTTATGAAGA TGCTGAGCAA CTCAAAAAAG 60 CTTTTAAAGG TTTCACTTTT TTTTTCTTCC AGATCCCCTT TGGTTGGATT TTGTATGCCT 56129 ||||||||| CTTTTAAAG. .......... .......... .......... .......... .......... 69 GATTTTAGTG CAAGATTTCT TTTCTATATT TGCATTTGCT ATTTTTCTTG AATGATCAGT 56189 .......... .......... .......... .......... .......... .......... 69 TGATTTTTAC TTTTCCTTAC TGTTTTTTCC TAGTTTAGTT TAGTTTTAGT TCTTGATGGG 56249 .......... .......... .......... .......... .......... .......... 69 GTTCTTGTGA TCTGAATGAT CTATTCAAAA TTGTTTCGAA ATGTAACATA GACCATCTGC 56309 .......... .......... .......... .......... .......... .......... 69 TGACTCTAAA TCTTGAATCT GTCTCGGTTA GGTAAAATGC TGTGTGATTT TTTATTTAAT 56369 .......... .......... .......... .......... .......... .......... 69 TCATTGTTGG AGGAAATTAG TGATCTTTGA CTGTAGGCAT ATGTAGAAGA CATTTTTCTT 56429 .......... .......... .......... .......... .......... .......... 69 TATGATTCTG TGTAGTCATT TCCCAAACGT ATGATTGGTC TAGATTATTA ATTTGTTGAC 56489 .......... .......... .......... .......... .......... .......... 69 AAAAATGATT AACTCCAATT CTCCGTGGTG GTTAGGCTGA TTATGATGTA TGGGGCGAGT 56549 .......... .......... .......... .......... .......... .......... 69 GGAGTGTTGG TTAGTTAAGA ATTCTAATGT CAAAAGATAT GAGGTGGCGA AAATGAGGAC 56609 .......... .......... .......... .......... .......... .......... 69 GCTGAGGTGG ATGTGGATAT GTAGGAGAGA TAAAGATTAA GAATGAAGAT ATCCAACATA 56669 .......... .......... .......... .......... .......... .......... 69 ACGTGGGAGT GGCTTCCGTG ATGGACAAGA TGAGGGAAGT GAGACTGAGA TGGTTTAGAC 56729 .......... .......... .......... .......... .......... .......... 69 ATGATATGTG AAGAGGAGGT GCACAGCGAT CTAGGGAGAA ATGTTAGAGG TTGGCCGTAG 56789 .......... .......... .......... .......... .......... .......... 69 TGAGTTTTAG GAGACGTAGA GGGAAACCAA AAAAGTGTTG GGAGGGGTGA TTAGACAAAA 56849 .......... .......... .......... .......... .......... .......... 69 CATGACGCAA CTTCAGCTTT CCGATGATAT GATTCTAGAT TGAAGGTTAT GGAGGTCACG 56909 .......... .......... .......... .......... .......... .......... 69 GATTAGGGTA GAAGGTTAGT AAATAGTTGA ATGTTGTCTC GTTTCCAAGG GGATAGCTTG 56969 .......... .......... .......... .......... .......... .......... 69 GTGGTAGTTT TGTTTCATTG TACCTATTTC CCCAGTAATA CAAGTAGTAG TAGCATTTTC 57029 .......... .......... .......... .......... .......... .......... 69 TCATAGTTGT CTGTCTTGCA ATTTTTGTTG CTCGTTATTT ACTGTGCTTC TGTTATCACA 57089 .......... .......... .......... .......... .......... .......... 69 TTAGTTGGTT ATTGTTATTG CTCTTGTTTT TTGAATGCTC TAGGTTATGC TTTCCCTTTA 57149 .......... .......... .......... .......... .......... .......... 69 ATTTTCAATG TCCTGTTACT CTGTTGTGTG TTTTGGGAAC AGCCTATCTA CCTCCACGAG 57209 .......... .......... .......... .......... .......... .......... 69 GTAGGGTTTA GGTTCCTCCC CAGACCCCGA CTATGGGACT ACATCGAGTT TGCTGTTGTT 57269 .......... .......... .......... .......... .......... .......... 69 GTTTGGGCTT GCAAAGCAGG AAGCTGAATT TTGTTTTCCA CAGAAGACTC ATGGTTAAAC 57329 .......... .......... .......... .......... .......... .......... 69 GTTTGCAGGA TGGGGCACAA ATGAGGAACT TATTATTCAG ATTCTGGCTC ATAGGAATGC 57389 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA TGGGGCACAA ATGAGGAACT TATTATTCAG ATTCTGGCTC ATAGGAATGC 121 AGCACAACGC AAGTTAATCC GAGATTCTTA TGCTGCTGCT TATGGAGAGG ATCTTCTCAA 57449 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCACAACGC AAGTTAATCC GAGATTCTTA TGCTGCTGCT TATGGAGAGG ATCTTCTCAA 181 GGACTTGGAT TCTGAACTGA CAAGTGATTT TCAGGTTAAT TAATCTCAAT TTTCCATTCT 57509 |||||||||| |||||||||| |||||||||| |||| GGACTTGGAT TCTGAACTGA CAAGTGATTT TCAG...... .......... .......... 215 TGTTCCAAAT TGTGTTGGAG TACACCCCGT TTAATCAATC ATTGTGGTGT ATTGAATGTT 57569 .......... .......... .......... .......... .......... .......... 215 TTTCTTTTTG TTCATTTATA CTTTCTTAGA TTTGTCTAGT CCATATCTAC ATTATTAATC 57629 .......... .......... .......... .......... .......... .......... 215 ACAGGTAACA TTAGCCAAGG ATTGCTTTGA CTAATATATA ATTTGATTCA CATGATATTG 57689 .......... .......... .......... .......... .......... .......... 215 CAGCGTGTGG TGCTTCTCTG GACTTTGAGT CCTGCTGAGC GCGACGCCTA CTTGGTTAAT 57749 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...CGTGTGG TGCTTCTCTG GACTTTGAGT CCTGCTGAGC GCGACGCCTA CTTGGTTAAT 272 GAGGCTACCA AACGTCTGAC TGCTAGCAAT TGGGTTATCA TGGAAATTGC TTGTACCAGG 57809 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGCTACCA AACGTCTGAC TGCTAGCAAT TGGGTTATCA TGGAAATTGC TTGTACCAGG 332 TCTTCTGATG ATCTTTTTAA GGCGAGGCAG GCCTACCATG CTCGATACAA GAAATCACTT 57869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTGATG ATCTTTTTAA GGCGAGGCAG GCCTACCATG CTCGATACAA GAAATCACTT 392 GAAGAAGATG TTGCTTATCA TACAAGTGGG GATTTCCGTA AG 57911 |||||||||| |||||||||| |||||||||| |||||||||| || GAAGAAGATG TTGCTTATCA TACAAGTGGG GATTTCCGTA AG 434 hqPGS_C04HBa0077O05.1+_SGN-E324520+ (56010 56078,57338 57483,57693 57911) ******************************************************************************** EST sequence 72 +strand 407 n (File: SGN-E335608+) 1 TCTTAAAGTT CCAGCATCAG TTCCAGATCC TTATGAAGAT GCTGAGCAAC TCAAAAAAGC 61 TTTTAAAGGA TGGGGCACAA ATGAGGAACT TATTATTCAG ATTCTGGCTC ATAGGAATGC 121 AGCACAACGC AAGTTAATCC GAGATTCTTA TGCTGCTGCT TATGGAGAGG ATCTTCTCAA 181 GGACTTGGAT TCTGAACTGA CAAGTGATTT TCAGCGTGTG GTGCTTCTCT GGACTTTGAG 241 TCCTGCTGAG CGCGACGCCT ACTTGGTTAA TGAGGCTACC AAACGTCTGA CTGCTAGCAA 301 TTGGGTTATC ATGGAAATTG CTTGTACCAG GTCTTCTGAT GATCTTTTTA AGGCGAGGCA 361 GGCCTACCAT GCTCGATACA AGAAATCACT TGAAGAAGAT GTTGCTT Predicted gene structure (within gDNA segment 55411 to 58495): Exon 1 56011 56078 ( 68 n); cDNA 1 68 ( 68 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 69 214 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57885 ( 193 n); cDNA 215 407 ( 193 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E335608+ 1.000 407 1.000 C PGS_C04HBa0077O05.1+_SGN-E335608+ (56011 56078,57338 57483,57693 57885) Alignment (genomic DNA sequence = upper lines): TCTTAAAGTT CCAGCATCAG TTCCAGATCC TTATGAAGAT GCTGAGCAAC TCAAAAAAGC 56070 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTAAAGTT CCAGCATCAG TTCCAGATCC TTATGAAGAT GCTGAGCAAC TCAAAAAAGC 60 TTTTAAAGGT TTCACTTTTT TTTTCTTCCA GATCCCCTTT GGTTGGATTT TGTATGCCTG 56130 |||||||| TTTTAAAG.. .......... .......... .......... .......... .......... 68 ATTTTAGTGC AAGATTTCTT TTCTATATTT GCATTTGCTA TTTTTCTTGA ATGATCAGTT 56190 .......... .......... .......... .......... .......... .......... 68 GATTTTTACT TTTCCTTACT GTTTTTTCCT AGTTTAGTTT AGTTTTAGTT CTTGATGGGG 56250 .......... .......... .......... .......... .......... .......... 68 TTCTTGTGAT CTGAATGATC TATTCAAAAT TGTTTCGAAA TGTAACATAG ACCATCTGCT 56310 .......... .......... .......... .......... .......... .......... 68 GACTCTAAAT CTTGAATCTG TCTCGGTTAG GTAAAATGCT GTGTGATTTT TTATTTAATT 56370 .......... .......... .......... .......... .......... .......... 68 CATTGTTGGA GGAAATTAGT GATCTTTGAC TGTAGGCATA TGTAGAAGAC ATTTTTCTTT 56430 .......... .......... .......... .......... .......... .......... 68 ATGATTCTGT GTAGTCATTT CCCAAACGTA TGATTGGTCT AGATTATTAA TTTGTTGACA 56490 .......... .......... .......... .......... .......... .......... 68 AAAATGATTA ACTCCAATTC TCCGTGGTGG TTAGGCTGAT TATGATGTAT GGGGCGAGTG 56550 .......... .......... .......... .......... .......... .......... 68 GAGTGTTGGT TAGTTAAGAA TTCTAATGTC AAAAGATATG AGGTGGCGAA AATGAGGACG 56610 .......... .......... .......... .......... .......... .......... 68 CTGAGGTGGA TGTGGATATG TAGGAGAGAT AAAGATTAAG AATGAAGATA TCCAACATAA 56670 .......... .......... .......... .......... .......... .......... 68 CGTGGGAGTG GCTTCCGTGA TGGACAAGAT GAGGGAAGTG AGACTGAGAT GGTTTAGACA 56730 .......... .......... .......... .......... .......... .......... 68 TGATATGTGA AGAGGAGGTG CACAGCGATC TAGGGAGAAA TGTTAGAGGT TGGCCGTAGT 56790 .......... .......... .......... .......... .......... .......... 68 GAGTTTTAGG AGACGTAGAG GGAAACCAAA AAAGTGTTGG GAGGGGTGAT TAGACAAAAC 56850 .......... .......... .......... .......... .......... .......... 68 ATGACGCAAC TTCAGCTTTC CGATGATATG ATTCTAGATT GAAGGTTATG GAGGTCACGG 56910 .......... .......... .......... .......... .......... .......... 68 ATTAGGGTAG AAGGTTAGTA AATAGTTGAA TGTTGTCTCG TTTCCAAGGG GATAGCTTGG 56970 .......... .......... .......... .......... .......... .......... 68 TGGTAGTTTT GTTTCATTGT ACCTATTTCC CCAGTAATAC AAGTAGTAGT AGCATTTTCT 57030 .......... .......... .......... .......... .......... .......... 68 CATAGTTGTC TGTCTTGCAA TTTTTGTTGC TCGTTATTTA CTGTGCTTCT GTTATCACAT 57090 .......... .......... .......... .......... .......... .......... 68 TAGTTGGTTA TTGTTATTGC TCTTGTTTTT TGAATGCTCT AGGTTATGCT TTCCCTTTAA 57150 .......... .......... .......... .......... .......... .......... 68 TTTTCAATGT CCTGTTACTC TGTTGTGTGT TTTGGGAACA GCCTATCTAC CTCCACGAGG 57210 .......... .......... .......... .......... .......... .......... 68 TAGGGTTTAG GTTCCTCCCC AGACCCCGAC TATGGGACTA CATCGAGTTT GCTGTTGTTG 57270 .......... .......... .......... .......... .......... .......... 68 TTTGGGCTTG CAAAGCAGGA AGCTGAATTT TGTTTTCCAC AGAAGACTCA TGGTTAAACG 57330 .......... .......... .......... .......... .......... .......... 68 TTTGCAGGAT GGGGCACAAA TGAGGAACTT ATTATTCAGA TTCTGGCTCA TAGGAATGCA 57390 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GAT GGGGCACAAA TGAGGAACTT ATTATTCAGA TTCTGGCTCA TAGGAATGCA 121 GCACAACGCA AGTTAATCCG AGATTCTTAT GCTGCTGCTT ATGGAGAGGA TCTTCTCAAG 57450 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACAACGCA AGTTAATCCG AGATTCTTAT GCTGCTGCTT ATGGAGAGGA TCTTCTCAAG 181 GACTTGGATT CTGAACTGAC AAGTGATTTT CAGGTTAATT AATCTCAATT TTCCATTCTT 57510 |||||||||| |||||||||| |||||||||| ||| GACTTGGATT CTGAACTGAC AAGTGATTTT CAG....... .......... .......... 214 GTTCCAAATT GTGTTGGAGT ACACCCCGTT TAATCAATCA TTGTGGTGTA TTGAATGTTT 57570 .......... .......... .......... .......... .......... .......... 214 TTCTTTTTGT TCATTTATAC TTTCTTAGAT TTGTCTAGTC CATATCTACA TTATTAATCA 57630 .......... .......... .......... .......... .......... .......... 214 CAGGTAACAT TAGCCAAGGA TTGCTTTGAC TAATATATAA TTTGATTCAC ATGATATTGC 57690 .......... .......... .......... .......... .......... .......... 214 AGCGTGTGGT GCTTCTCTGG ACTTTGAGTC CTGCTGAGCG CGACGCCTAC TTGGTTAATG 57750 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..CGTGTGGT GCTTCTCTGG ACTTTGAGTC CTGCTGAGCG CGACGCCTAC TTGGTTAATG 272 AGGCTACCAA ACGTCTGACT GCTAGCAATT GGGTTATCAT GGAAATTGCT TGTACCAGGT 57810 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCTACCAA ACGTCTGACT GCTAGCAATT GGGTTATCAT GGAAATTGCT TGTACCAGGT 332 CTTCTGATGA TCTTTTTAAG GCGAGGCAGG CCTACCATGC TCGATACAAG AAATCACTTG 57870 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTGATGA TCTTTTTAAG GCGAGGCAGG CCTACCATGC TCGATACAAG AAATCACTTG 392 AAGAAGATGT TGCTT 57885 |||||||||| ||||| AAGAAGATGT TGCTT 407 hqPGS_C04HBa0077O05.1+_SGN-E335608+ (56011 56078,57338 57483,57693 57885) ******************************************************************************** EST sequence 19 +strand 578 n (File: SGN-E202737+) 1 GCACGAGAGT TCCAGCATCA GTTCCAGATC CTTATGAAGA TGCTGAGCAA CTCAAAAAAG 61 CTTTTAAAGG ATGGGGCACA AATGAGGAAC TTATTATTCA GATTCTGGCT CATAGGAATG 121 CAGCACAACG CAAGTTAATC CGAGATTCTT ATGCTGCTGC TTATGGAGAG GATCTTCTCA 181 AGGACTTGGA TTCTGAACTG ACAAGTGATT TTCAGCGTGT GGTGCTTCTC TGGACTTTGA 241 GTCCTGCTGA GCGCGACGCC TACTTGGTTA ATGAGGCTAC CAAACGTCTG ACTGCTAGCA 301 ATTGGGTTAT CATGGAAATT GCTTGTACCA GGTCTTCTGA TGATCTTTTT AAGGCGAGGC 361 AGGCCTACCA TGCTCGATAC AAGAAATCAC TTGAAGAAGA TGTTGCTTAT CATACAAGTG 421 GGGATTTCCG TAAGCTTTTG GTTCCTCTTA TAACTGCATT CAGATATGAA GGAGATGAGG 481 TGAACATGAC ATTAGCAAGA AAGGAAGCAA ATATACTGCA TGAAGAAGAT CTCTGACAAG 541 GCTTACAATG ACGAGGAGAT CATCCGAATC ATTTCTAC Predicted gene structure (within gDNA segment 55347 to 59433): Exon 1 56017 56078 ( 62 n); cDNA 8 69 ( 62 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 70 215 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 216 434 ( 219 n); score: 1.000 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 1.00) Exon 4 58681 58823 ( 143 n); cDNA 435 578 ( 144 n); score: 0.983 MATCH C04HBa0077O05.1+ SGN-E202737+ 0.996 570 0.986 C PGS_C04HBa0077O05.1+_SGN-E202737+ (56017 56078,57338 57483,57693 57911,58681 58823) Alignment (genomic DNA sequence = upper lines): AGTTCCAGCA TCAGTTCCAG ATCCTTATGA AGATGCTGAG CAACTCAAAA AAGCTTTTAA 56076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCCAGCA TCAGTTCCAG ATCCTTATGA AGATGCTGAG CAACTCAAAA AAGCTTTTAA 67 AGGTTTCACT TTTTTTTTCT TCCAGATCCC CTTTGGTTGG ATTTTGTATG CCTGATTTTA 56136 || AG........ .......... .......... .......... .......... .......... 69 GTGCAAGATT TCTTTTCTAT ATTTGCATTT GCTATTTTTC TTGAATGATC AGTTGATTTT 56196 .......... .......... .......... .......... .......... .......... 69 TACTTTTCCT TACTGTTTTT TCCTAGTTTA GTTTAGTTTT AGTTCTTGAT GGGGTTCTTG 56256 .......... .......... .......... .......... .......... .......... 69 TGATCTGAAT GATCTATTCA AAATTGTTTC GAAATGTAAC ATAGACCATC TGCTGACTCT 56316 .......... .......... .......... .......... .......... .......... 69 AAATCTTGAA TCTGTCTCGG TTAGGTAAAA TGCTGTGTGA TTTTTTATTT AATTCATTGT 56376 .......... .......... .......... .......... .......... .......... 69 TGGAGGAAAT TAGTGATCTT TGACTGTAGG CATATGTAGA AGACATTTTT CTTTATGATT 56436 .......... .......... .......... .......... .......... .......... 69 CTGTGTAGTC ATTTCCCAAA CGTATGATTG GTCTAGATTA TTAATTTGTT GACAAAAATG 56496 .......... .......... .......... .......... .......... .......... 69 ATTAACTCCA ATTCTCCGTG GTGGTTAGGC TGATTATGAT GTATGGGGCG AGTGGAGTGT 56556 .......... .......... .......... .......... .......... .......... 69 TGGTTAGTTA AGAATTCTAA TGTCAAAAGA TATGAGGTGG CGAAAATGAG GACGCTGAGG 56616 .......... .......... .......... .......... .......... .......... 69 TGGATGTGGA TATGTAGGAG AGATAAAGAT TAAGAATGAA GATATCCAAC ATAACGTGGG 56676 .......... .......... .......... .......... .......... .......... 69 AGTGGCTTCC GTGATGGACA AGATGAGGGA AGTGAGACTG AGATGGTTTA GACATGATAT 56736 .......... .......... .......... .......... .......... .......... 69 GTGAAGAGGA GGTGCACAGC GATCTAGGGA GAAATGTTAG AGGTTGGCCG TAGTGAGTTT 56796 .......... .......... .......... .......... .......... .......... 69 TAGGAGACGT AGAGGGAAAC CAAAAAAGTG TTGGGAGGGG TGATTAGACA AAACATGACG 56856 .......... .......... .......... .......... .......... .......... 69 CAACTTCAGC TTTCCGATGA TATGATTCTA GATTGAAGGT TATGGAGGTC ACGGATTAGG 56916 .......... .......... .......... .......... .......... .......... 69 GTAGAAGGTT AGTAAATAGT TGAATGTTGT CTCGTTTCCA AGGGGATAGC TTGGTGGTAG 56976 .......... .......... .......... .......... .......... .......... 69 TTTTGTTTCA TTGTACCTAT TTCCCCAGTA ATACAAGTAG TAGTAGCATT TTCTCATAGT 57036 .......... .......... .......... .......... .......... .......... 69 TGTCTGTCTT GCAATTTTTG TTGCTCGTTA TTTACTGTGC TTCTGTTATC ACATTAGTTG 57096 .......... .......... .......... .......... .......... .......... 69 GTTATTGTTA TTGCTCTTGT TTTTTGAATG CTCTAGGTTA TGCTTTCCCT TTAATTTTCA 57156 .......... .......... .......... .......... .......... .......... 69 ATGTCCTGTT ACTCTGTTGT GTGTTTTGGG AACAGCCTAT CTACCTCCAC GAGGTAGGGT 57216 .......... .......... .......... .......... .......... .......... 69 TTAGGTTCCT CCCCAGACCC CGACTATGGG ACTACATCGA GTTTGCTGTT GTTGTTTGGG 57276 .......... .......... .......... .......... .......... .......... 69 CTTGCAAAGC AGGAAGCTGA ATTTTGTTTT CCACAGAAGA CTCATGGTTA AACGTTTGCA 57336 .......... .......... .......... .......... .......... .......... 69 GGATGGGGCA CAAATGAGGA ACTTATTATT CAGATTCTGG CTCATAGGAA TGCAGCACAA 57396 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GATGGGGCA CAAATGAGGA ACTTATTATT CAGATTCTGG CTCATAGGAA TGCAGCACAA 128 CGCAAGTTAA TCCGAGATTC TTATGCTGCT GCTTATGGAG AGGATCTTCT CAAGGACTTG 57456 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCAAGTTAA TCCGAGATTC TTATGCTGCT GCTTATGGAG AGGATCTTCT CAAGGACTTG 188 GATTCTGAAC TGACAAGTGA TTTTCAGGTT AATTAATCTC AATTTTCCAT TCTTGTTCCA 57516 |||||||||| |||||||||| ||||||| GATTCTGAAC TGACAAGTGA TTTTCAG... .......... .......... .......... 215 AATTGTGTTG GAGTACACCC CGTTTAATCA ATCATTGTGG TGTATTGAAT GTTTTTCTTT 57576 .......... .......... .......... .......... .......... .......... 215 TTGTTCATTT ATACTTTCTT AGATTTGTCT AGTCCATATC TACATTATTA ATCACAGGTA 57636 .......... .......... .......... .......... .......... .......... 215 ACATTAGCCA AGGATTGCTT TGACTAATAT ATAATTTGAT TCACATGATA TTGCAGCGTG 57696 |||| .......... .......... .......... .......... .......... ......CGTG 219 TGGTGCTTCT CTGGACTTTG AGTCCTGCTG AGCGCGACGC CTACTTGGTT AATGAGGCTA 57756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGCTTCT CTGGACTTTG AGTCCTGCTG AGCGCGACGC CTACTTGGTT AATGAGGCTA 279 CCAAACGTCT GACTGCTAGC AATTGGGTTA TCATGGAAAT TGCTTGTACC AGGTCTTCTG 57816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAACGTCT GACTGCTAGC AATTGGGTTA TCATGGAAAT TGCTTGTACC AGGTCTTCTG 339 ATGATCTTTT TAAGGCGAGG CAGGCCTACC ATGCTCGATA CAAGAAATCA CTTGAAGAAG 57876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATCTTTT TAAGGCGAGG CAGGCCTACC ATGCTCGATA CAAGAAATCA CTTGAAGAAG 399 ATGTTGCTTA TCATACAAGT GGGGATTTCC GTAAGGTACT TCGCATATAA GATCTACTGT 57936 |||||||||| |||||||||| |||||||||| ||||| ATGTTGCTTA TCATACAAGT GGGGATTTCC GTAAG..... .......... .......... 434 GCCACATTTA ATTCATTGTT ATTCTAGTGC CAGTCAACTT TGTCATTAGA TCAGCTGTAG 57996 .......... .......... .......... .......... .......... .......... 434 AGAAAAACCT ATAGTCAGCC GAAGTTTGCT AAAGAATCTG CCACTTTGTT GTTTTCTATA 58056 .......... .......... .......... .......... .......... .......... 434 AATCTATAGA CGATTCTGAA ATTACTAGCC GAGAATTTGG ATGAAATGAA GCTCCACCAT 58116 .......... .......... .......... .......... .......... .......... 434 GAGTCTAGGT ATCGGCAATT CTTGGGGCTT TTTTATTTTC ATTGAAGCGA TTATTTGACT 58176 .......... .......... .......... .......... .......... .......... 434 GTTTAGTGAT TCGAGAACCA GAAGATCATT TTGCCTAGTA AAGCTCATCA ACTCTTCTTT 58236 .......... .......... .......... .......... .......... .......... 434 TTGCTCGTTG TGACTTCTTA AGGATGATTC TTTCTACCAT GTAAGCTGTT GCACTTGCGC 58296 .......... .......... .......... .......... .......... .......... 434 CTATTTGCCA CCTTTGGGGT GTTTAAGATG AATGATAAAC GGTGACAAGT GATGGATAGT 58356 .......... .......... .......... .......... .......... .......... 434 CTCCGGTTAC GACCATCCAC CTCCAGCCAT AACGTTGGGG GTTAACCTCA CCAAGGGAGC 58416 .......... .......... .......... .......... .......... .......... 434 GAAGTGGAGA AGGATCACCG TTGTTGTGCT CTTGAGCCAG GGGAAACTGA GGTTACGGTT 58476 .......... .......... .......... .......... .......... .......... 434 TACTGTGTCC AAAAAATAAA ATAAAAGGTT TAAGGATGAT AGTGTCTGAG ATAACAGTGT 58536 .......... .......... .......... .......... .......... .......... 434 AAATAGTTAG ATAAGCACCT TAAAGTTAGA TTTTTGTGTT GTCTGTCTTT GTCTCCAGTG 58596 .......... .......... .......... .......... .......... .......... 434 AATACTGAGA ATACATGCAA CAAATAAATC TTGCAATCAC CGTCGTTAAG CTGGTCATAT 58656 .......... .......... .......... .......... .......... .......... 434 TGTATTAAAC TAATTCCCGA ACAGCTTTTG GTTCCTCTTA TAACTGCATT CAGATATGAA 58716 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....CTTTTG GTTCCTCTTA TAACTGCATT CAGATATGAA 470 GGAGATGAGG TGAACATGAC ATTAGCAAGA AAGGAAGCAA ATATACTGCA TG-AGAAGAT 58775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| GGAGATGAGG TGAACATGAC ATTAGCAAGA AAGGAAGCAA ATATACTGCA TGAAGAAGAT 530 CTCTGACAAG GCTTACAATG ACGAGGAGAT CATCCGAATC ATTTCTAC 58823 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CTCTGACAAG GCTTACAATG ACGAGGAGAT CATCCGAATC ATTTCTAC 578 hqPGS_C04HBa0077O05.1+_SGN-E202737+ (56017 56078,57338 57483,57693 57911,58681 58823) ******************************************************************************** EST sequence 30 +strand 360 n (File: SGN-E281308+) 1 GCACGAGAGT TCCAGCATCA GTTCCAGATC CTTATGAAGA TGCTGAGCAA CTCAAAAAAG 61 CTTTTAAAGG ATGGGGCACA AATGAGGAAC TTATTATTCA GATTCTGGCT CATAGGAATG 121 CAGCACAACG CAAGTTAATC CGAGATTCTT ATGCTGCTGC TTATGGAGAG GATCTTCTCA 181 AGGACTTGGA TTCTGAACTG ACAAGTGATT TTCAGCGTGT GGTGCTTCTC TGGACTTTGA 241 GTCCTGCTGA GCGCGACGCC TACTTGGTTA ATGAGGCTAC CAAACGTCTG ACTGCTAGCA 301 ATTGGGTTAT CATGGAAATT GCTTGTACCA GGTCTTCTGA TGATCTTTTT AAGGCGAGGC Predicted gene structure (within gDNA segment 55347 to 58447): Exon 1 56017 56078 ( 62 n); cDNA 8 69 ( 62 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 70 215 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57837 ( 145 n); cDNA 216 360 ( 145 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E281308+ 1.000 353 0.981 C PGS_C04HBa0077O05.1+_SGN-E281308+ (56017 56078,57338 57483,57693 57837) Alignment (genomic DNA sequence = upper lines): AGTTCCAGCA TCAGTTCCAG ATCCTTATGA AGATGCTGAG CAACTCAAAA AAGCTTTTAA 56076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCCAGCA TCAGTTCCAG ATCCTTATGA AGATGCTGAG CAACTCAAAA AAGCTTTTAA 67 AGGTTTCACT TTTTTTTTCT TCCAGATCCC CTTTGGTTGG ATTTTGTATG CCTGATTTTA 56136 || AG........ .......... .......... .......... .......... .......... 69 GTGCAAGATT TCTTTTCTAT ATTTGCATTT GCTATTTTTC TTGAATGATC AGTTGATTTT 56196 .......... .......... .......... .......... .......... .......... 69 TACTTTTCCT TACTGTTTTT TCCTAGTTTA GTTTAGTTTT AGTTCTTGAT GGGGTTCTTG 56256 .......... .......... .......... .......... .......... .......... 69 TGATCTGAAT GATCTATTCA AAATTGTTTC GAAATGTAAC ATAGACCATC TGCTGACTCT 56316 .......... .......... .......... .......... .......... .......... 69 AAATCTTGAA TCTGTCTCGG TTAGGTAAAA TGCTGTGTGA TTTTTTATTT AATTCATTGT 56376 .......... .......... .......... .......... .......... .......... 69 TGGAGGAAAT TAGTGATCTT TGACTGTAGG CATATGTAGA AGACATTTTT CTTTATGATT 56436 .......... .......... .......... .......... .......... .......... 69 CTGTGTAGTC ATTTCCCAAA CGTATGATTG GTCTAGATTA TTAATTTGTT GACAAAAATG 56496 .......... .......... .......... .......... .......... .......... 69 ATTAACTCCA ATTCTCCGTG GTGGTTAGGC TGATTATGAT GTATGGGGCG AGTGGAGTGT 56556 .......... .......... .......... .......... .......... .......... 69 TGGTTAGTTA AGAATTCTAA TGTCAAAAGA TATGAGGTGG CGAAAATGAG GACGCTGAGG 56616 .......... .......... .......... .......... .......... .......... 69 TGGATGTGGA TATGTAGGAG AGATAAAGAT TAAGAATGAA GATATCCAAC ATAACGTGGG 56676 .......... .......... .......... .......... .......... .......... 69 AGTGGCTTCC GTGATGGACA AGATGAGGGA AGTGAGACTG AGATGGTTTA GACATGATAT 56736 .......... .......... .......... .......... .......... .......... 69 GTGAAGAGGA GGTGCACAGC GATCTAGGGA GAAATGTTAG AGGTTGGCCG TAGTGAGTTT 56796 .......... .......... .......... .......... .......... .......... 69 TAGGAGACGT AGAGGGAAAC CAAAAAAGTG TTGGGAGGGG TGATTAGACA AAACATGACG 56856 .......... .......... .......... .......... .......... .......... 69 CAACTTCAGC TTTCCGATGA TATGATTCTA GATTGAAGGT TATGGAGGTC ACGGATTAGG 56916 .......... .......... .......... .......... .......... .......... 69 GTAGAAGGTT AGTAAATAGT TGAATGTTGT CTCGTTTCCA AGGGGATAGC TTGGTGGTAG 56976 .......... .......... .......... .......... .......... .......... 69 TTTTGTTTCA TTGTACCTAT TTCCCCAGTA ATACAAGTAG TAGTAGCATT TTCTCATAGT 57036 .......... .......... .......... .......... .......... .......... 69 TGTCTGTCTT GCAATTTTTG TTGCTCGTTA TTTACTGTGC TTCTGTTATC ACATTAGTTG 57096 .......... .......... .......... .......... .......... .......... 69 GTTATTGTTA TTGCTCTTGT TTTTTGAATG CTCTAGGTTA TGCTTTCCCT TTAATTTTCA 57156 .......... .......... .......... .......... .......... .......... 69 ATGTCCTGTT ACTCTGTTGT GTGTTTTGGG AACAGCCTAT CTACCTCCAC GAGGTAGGGT 57216 .......... .......... .......... .......... .......... .......... 69 TTAGGTTCCT CCCCAGACCC CGACTATGGG ACTACATCGA GTTTGCTGTT GTTGTTTGGG 57276 .......... .......... .......... .......... .......... .......... 69 CTTGCAAAGC AGGAAGCTGA ATTTTGTTTT CCACAGAAGA CTCATGGTTA AACGTTTGCA 57336 .......... .......... .......... .......... .......... .......... 69 GGATGGGGCA CAAATGAGGA ACTTATTATT CAGATTCTGG CTCATAGGAA TGCAGCACAA 57396 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GATGGGGCA CAAATGAGGA ACTTATTATT CAGATTCTGG CTCATAGGAA TGCAGCACAA 128 CGCAAGTTAA TCCGAGATTC TTATGCTGCT GCTTATGGAG AGGATCTTCT CAAGGACTTG 57456 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCAAGTTAA TCCGAGATTC TTATGCTGCT GCTTATGGAG AGGATCTTCT CAAGGACTTG 188 GATTCTGAAC TGACAAGTGA TTTTCAGGTT AATTAATCTC AATTTTCCAT TCTTGTTCCA 57516 |||||||||| |||||||||| ||||||| GATTCTGAAC TGACAAGTGA TTTTCAG... .......... .......... .......... 215 AATTGTGTTG GAGTACACCC CGTTTAATCA ATCATTGTGG TGTATTGAAT GTTTTTCTTT 57576 .......... .......... .......... .......... .......... .......... 215 TTGTTCATTT ATACTTTCTT AGATTTGTCT AGTCCATATC TACATTATTA ATCACAGGTA 57636 .......... .......... .......... .......... .......... .......... 215 ACATTAGCCA AGGATTGCTT TGACTAATAT ATAATTTGAT TCACATGATA TTGCAGCGTG 57696 |||| .......... .......... .......... .......... .......... ......CGTG 219 TGGTGCTTCT CTGGACTTTG AGTCCTGCTG AGCGCGACGC CTACTTGGTT AATGAGGCTA 57756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGCTTCT CTGGACTTTG AGTCCTGCTG AGCGCGACGC CTACTTGGTT AATGAGGCTA 279 CCAAACGTCT GACTGCTAGC AATTGGGTTA TCATGGAAAT TGCTTGTACC AGGTCTTCTG 57816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAACGTCT GACTGCTAGC AATTGGGTTA TCATGGAAAT TGCTTGTACC AGGTCTTCTG 339 ATGATCTTTT TAAGGCGAGG C 57837 |||||||||| |||||||||| | ATGATCTTTT TAAGGCGAGG C 360 hqPGS_C04HBa0077O05.1+_SGN-E281308+ (56017 56078,57338 57483,57693 57837) ******************************************************************************** EST sequence 81 +strand 535 n (File: SGN-E231374+) 1 TCCAGCATCA GTTCCAGATC CTTATGAAGA TGCTGAGCAA CTCAAAAAAG CTTTTAAAGG 61 ATGGGGCACA AATGAGGAAC TTATTATTCA GATTCTGGCT CATAGGAATG CAGCACAACG 121 CAAGTTAATC CGAGATTCTT ATGCTGCTGC TTATGGAGAG GATCTTCTCA AGGACTTGGA 181 TTCTGAACTG ACAAGTGATT TTCAGCGTGT GGTGCTTCTC TGGACTTTGA GTCCTGCTGA 241 GCGCGACGCC TACTTGGTTA ATGAGGCTAC CAAACGTCTG ACTGCTAGCA ATTGGGTTAT 301 CATGGAAATT GCTTGTACCA GGTCTTCTGA TGATCTTTTT AAGGCGAGGC AGGCCTACCA 361 TGCTCGATAC AAGAAATCAC TTGAAGAAGA TGTTGCTTAT CATACAAGTG GGGATTTCCG 421 TAAGCTTTTG GTTCCTCTTA TAACTGCATT CAGATATGAA GGAGATGAGG TGAACATGAC 481 ATTAGCAAGA AAGGAAGCAA ATATACTGCA TGAGAAGATC TCTGACAAGG CTTAC Predicted gene structure (within gDNA segment 55420 to 59401): Exon 1 56020 56078 ( 59 n); cDNA 1 59 ( 59 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 (s: 1.00), Pa: 0.568 (s: 1.00) Exon 2 57338 57483 ( 146 n); cDNA 60 205 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 3 57693 57911 ( 219 n); cDNA 206 424 ( 219 n); score: 1.000 Intron 3 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 1.00) Exon 4 58681 58791 ( 111 n); cDNA 425 535 ( 111 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E231374+ 1.000 535 1.000 C PGS_C04HBa0077O05.1+_SGN-E231374+ (56020 56078,57338 57483,57693 57911,58681 58791) Alignment (genomic DNA sequence = upper lines): TCCAGCATCA GTTCCAGATC CTTATGAAGA TGCTGAGCAA CTCAAAAAAG CTTTTAAAGG 56079 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCCAGCATCA GTTCCAGATC CTTATGAAGA TGCTGAGCAA CTCAAAAAAG CTTTTAAAG. 59 TTTCACTTTT TTTTTCTTCC AGATCCCCTT TGGTTGGATT TTGTATGCCT GATTTTAGTG 56139 .......... .......... .......... .......... .......... .......... 59 CAAGATTTCT TTTCTATATT TGCATTTGCT ATTTTTCTTG AATGATCAGT TGATTTTTAC 56199 .......... .......... .......... .......... .......... .......... 59 TTTTCCTTAC TGTTTTTTCC TAGTTTAGTT TAGTTTTAGT TCTTGATGGG GTTCTTGTGA 56259 .......... .......... .......... .......... .......... .......... 59 TCTGAATGAT CTATTCAAAA TTGTTTCGAA ATGTAACATA GACCATCTGC TGACTCTAAA 56319 .......... .......... .......... .......... .......... .......... 59 TCTTGAATCT GTCTCGGTTA GGTAAAATGC TGTGTGATTT TTTATTTAAT TCATTGTTGG 56379 .......... .......... .......... .......... .......... .......... 59 AGGAAATTAG TGATCTTTGA CTGTAGGCAT ATGTAGAAGA CATTTTTCTT TATGATTCTG 56439 .......... .......... .......... .......... .......... .......... 59 TGTAGTCATT TCCCAAACGT ATGATTGGTC TAGATTATTA ATTTGTTGAC AAAAATGATT 56499 .......... .......... .......... .......... .......... .......... 59 AACTCCAATT CTCCGTGGTG GTTAGGCTGA TTATGATGTA TGGGGCGAGT GGAGTGTTGG 56559 .......... .......... .......... .......... .......... .......... 59 TTAGTTAAGA ATTCTAATGT CAAAAGATAT GAGGTGGCGA AAATGAGGAC GCTGAGGTGG 56619 .......... .......... .......... .......... .......... .......... 59 ATGTGGATAT GTAGGAGAGA TAAAGATTAA GAATGAAGAT ATCCAACATA ACGTGGGAGT 56679 .......... .......... .......... .......... .......... .......... 59 GGCTTCCGTG ATGGACAAGA TGAGGGAAGT GAGACTGAGA TGGTTTAGAC ATGATATGTG 56739 .......... .......... .......... .......... .......... .......... 59 AAGAGGAGGT GCACAGCGAT CTAGGGAGAA ATGTTAGAGG TTGGCCGTAG TGAGTTTTAG 56799 .......... .......... .......... .......... .......... .......... 59 GAGACGTAGA GGGAAACCAA AAAAGTGTTG GGAGGGGTGA TTAGACAAAA CATGACGCAA 56859 .......... .......... .......... .......... .......... .......... 59 CTTCAGCTTT CCGATGATAT GATTCTAGAT TGAAGGTTAT GGAGGTCACG GATTAGGGTA 56919 .......... .......... .......... .......... .......... .......... 59 GAAGGTTAGT AAATAGTTGA ATGTTGTCTC GTTTCCAAGG GGATAGCTTG GTGGTAGTTT 56979 .......... .......... .......... .......... .......... .......... 59 TGTTTCATTG TACCTATTTC CCCAGTAATA CAAGTAGTAG TAGCATTTTC TCATAGTTGT 57039 .......... .......... .......... .......... .......... .......... 59 CTGTCTTGCA ATTTTTGTTG CTCGTTATTT ACTGTGCTTC TGTTATCACA TTAGTTGGTT 57099 .......... .......... .......... .......... .......... .......... 59 ATTGTTATTG CTCTTGTTTT TTGAATGCTC TAGGTTATGC TTTCCCTTTA ATTTTCAATG 57159 .......... .......... .......... .......... .......... .......... 59 TCCTGTTACT CTGTTGTGTG TTTTGGGAAC AGCCTATCTA CCTCCACGAG GTAGGGTTTA 57219 .......... .......... .......... .......... .......... .......... 59 GGTTCCTCCC CAGACCCCGA CTATGGGACT ACATCGAGTT TGCTGTTGTT GTTTGGGCTT 57279 .......... .......... .......... .......... .......... .......... 59 GCAAAGCAGG AAGCTGAATT TTGTTTTCCA CAGAAGACTC ATGGTTAAAC GTTTGCAGGA 57339 || .......... .......... .......... .......... .......... ........GA 61 TGGGGCACAA ATGAGGAACT TATTATTCAG ATTCTGGCTC ATAGGAATGC AGCACAACGC 57399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGGCACAA ATGAGGAACT TATTATTCAG ATTCTGGCTC ATAGGAATGC AGCACAACGC 121 AAGTTAATCC GAGATTCTTA TGCTGCTGCT TATGGAGAGG ATCTTCTCAA GGACTTGGAT 57459 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTAATCC GAGATTCTTA TGCTGCTGCT TATGGAGAGG ATCTTCTCAA GGACTTGGAT 181 TCTGAACTGA CAAGTGATTT TCAGGTTAAT TAATCTCAAT TTTCCATTCT TGTTCCAAAT 57519 |||||||||| |||||||||| |||| TCTGAACTGA CAAGTGATTT TCAG...... .......... .......... .......... 205 TGTGTTGGAG TACACCCCGT TTAATCAATC ATTGTGGTGT ATTGAATGTT TTTCTTTTTG 57579 .......... .......... .......... .......... .......... .......... 205 TTCATTTATA CTTTCTTAGA TTTGTCTAGT CCATATCTAC ATTATTAATC ACAGGTAACA 57639 .......... .......... .......... .......... .......... .......... 205 TTAGCCAAGG ATTGCTTTGA CTAATATATA ATTTGATTCA CATGATATTG CAGCGTGTGG 57699 ||||||| .......... .......... .......... .......... .......... ...CGTGTGG 212 TGCTTCTCTG GACTTTGAGT CCTGCTGAGC GCGACGCCTA CTTGGTTAAT GAGGCTACCA 57759 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTCTCTG GACTTTGAGT CCTGCTGAGC GCGACGCCTA CTTGGTTAAT GAGGCTACCA 272 AACGTCTGAC TGCTAGCAAT TGGGTTATCA TGGAAATTGC TTGTACCAGG TCTTCTGATG 57819 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGTCTGAC TGCTAGCAAT TGGGTTATCA TGGAAATTGC TTGTACCAGG TCTTCTGATG 332 ATCTTTTTAA GGCGAGGCAG GCCTACCATG CTCGATACAA GAAATCACTT GAAGAAGATG 57879 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTTTTAA GGCGAGGCAG GCCTACCATG CTCGATACAA GAAATCACTT GAAGAAGATG 392 TTGCTTATCA TACAAGTGGG GATTTCCGTA AGGTACTTCG CATATAAGAT CTACTGTGCC 57939 |||||||||| |||||||||| |||||||||| || TTGCTTATCA TACAAGTGGG GATTTCCGTA AG........ .......... .......... 424 ACATTTAATT CATTGTTATT CTAGTGCCAG TCAACTTTGT CATTAGATCA GCTGTAGAGA 57999 .......... .......... .......... .......... .......... .......... 424 AAAACCTATA GTCAGCCGAA GTTTGCTAAA GAATCTGCCA CTTTGTTGTT TTCTATAAAT 58059 .......... .......... .......... .......... .......... .......... 424 CTATAGACGA TTCTGAAATT ACTAGCCGAG AATTTGGATG AAATGAAGCT CCACCATGAG 58119 .......... .......... .......... .......... .......... .......... 424 TCTAGGTATC GGCAATTCTT GGGGCTTTTT TATTTTCATT GAAGCGATTA TTTGACTGTT 58179 .......... .......... .......... .......... .......... .......... 424 TAGTGATTCG AGAACCAGAA GATCATTTTG CCTAGTAAAG CTCATCAACT CTTCTTTTTG 58239 .......... .......... .......... .......... .......... .......... 424 CTCGTTGTGA CTTCTTAAGG ATGATTCTTT CTACCATGTA AGCTGTTGCA CTTGCGCCTA 58299 .......... .......... .......... .......... .......... .......... 424 TTTGCCACCT TTGGGGTGTT TAAGATGAAT GATAAACGGT GACAAGTGAT GGATAGTCTC 58359 .......... .......... .......... .......... .......... .......... 424 CGGTTACGAC CATCCACCTC CAGCCATAAC GTTGGGGGTT AACCTCACCA AGGGAGCGAA 58419 .......... .......... .......... .......... .......... .......... 424 GTGGAGAAGG ATCACCGTTG TTGTGCTCTT GAGCCAGGGG AAACTGAGGT TACGGTTTAC 58479 .......... .......... .......... .......... .......... .......... 424 TGTGTCCAAA AAATAAAATA AAAGGTTTAA GGATGATAGT GTCTGAGATA ACAGTGTAAA 58539 .......... .......... .......... .......... .......... .......... 424 TAGTTAGATA AGCACCTTAA AGTTAGATTT TTGTGTTGTC TGTCTTTGTC TCCAGTGAAT 58599 .......... .......... .......... .......... .......... .......... 424 ACTGAGAATA CATGCAACAA ATAAATCTTG CAATCACCGT CGTTAAGCTG GTCATATTGT 58659 .......... .......... .......... .......... .......... .......... 424 ATTAAACTAA TTCCCGAACA GCTTTTGGTT CCTCTTATAA CTGCATTCAG ATATGAAGGA 58719 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .CTTTTGGTT CCTCTTATAA CTGCATTCAG ATATGAAGGA 463 GATGAGGTGA ACATGACATT AGCAAGAAAG GAAGCAAATA TACTGCATGA GAAGATCTCT 58779 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAGGTGA ACATGACATT AGCAAGAAAG GAAGCAAATA TACTGCATGA GAAGATCTCT 523 GACAAGGCTT AC 58791 |||||||||| || GACAAGGCTT AC 535 hqPGS_C04HBa0077O05.1+_SGN-E231374+ (56020 56078,57338 57483,57693 57911,58681 58791) ******************************************************************************** EST sequence 24 +strand 404 n (File: SGN-E272383+) 1 AGGATCTTCT CAAGGACTTT GATTCTGAAC TGACAAGTGA TTTGGGGGGT GTGGTGCTTC 61 TCTGGACTTT GAGTCCTGCT GAGCGCGACG CCTACTTGGT TAATGAGGCT ACCAAACGTC 121 TGACTGCTAG CAATTGGGTT ATCATGGAAA TTGCTTGTAC CACGTCTTCT GATGATCTTT 181 TTAAGGCGAG GCAGGCCTAC CATGCTCGAT ACAAGAAATC ACTTGAAGAA GATGTTGCTT 241 ATCATACAAG TGGGGATTTC CGTAAGCTTC TGGTTCCTCT TATAACTGCA TTCACATATG 301 AAGGAGATGA GGTGAACATG ACATTATCAA GAAAGGAAGC AAATATACTG CATGAGAAGA 361 TCTCTGACAA GGCTTACAAT GACGAGGAGA TCATCCGAAT CATT Predicted gene structure (within gDNA segment 56837 to 59428): Exon 1 57437 57483 ( 47 n); cDNA 1 47 ( 47 n); score: 0.915 Intron 1 57484 57692 ( 209 n); Pd: 0.997 (s: 0.91), Pa: 0.985 (s: 0.98) Exon 2 57693 57911 ( 219 n); cDNA 48 266 ( 219 n); score: 0.991 Intron 2 57912 58680 ( 769 n); Pd: 0.997 (s: 1.00), Pa: 0.613 (s: 0.96) Exon 3 58681 58818 ( 138 n); cDNA 267 404 ( 138 n); score: 0.978 MATCH C04HBa0077O05.1+ SGN-E272383+ 0.986 404 1.000 C PGS_C04HBa0077O05.1+_SGN-E272383+ (57437 57483,57693 57911,58681 58818) Alignment (genomic DNA sequence = upper lines): AGGATCTTCT CAAGGACTTG GATTCTGAAC TGACAAGTGA TTTTCAGGTT AATTAATCTC 57496 |||||||||| ||||||||| |||||||||| |||||||||| ||| | AGGATCTTCT CAAGGACTTT GATTCTGAAC TGACAAGTGA TTTGGGG... .......... 47 AATTTTCCAT TCTTGTTCCA AATTGTGTTG GAGTACACCC CGTTTAATCA ATCATTGTGG 57556 .......... .......... .......... .......... .......... .......... 47 TGTATTGAAT GTTTTTCTTT TTGTTCATTT ATACTTTCTT AGATTTGTCT AGTCCATATC 57616 .......... .......... .......... .......... .......... .......... 47 TACATTATTA ATCACAGGTA ACATTAGCCA AGGATTGCTT TGACTAATAT ATAATTTGAT 57676 .......... .......... .......... .......... .......... .......... 47 TCACATGATA TTGCAGCGTG TGGTGCTTCT CTGGACTTTG AGTCCTGCTG AGCGCGACGC 57736 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GGTG TGGTGCTTCT CTGGACTTTG AGTCCTGCTG AGCGCGACGC 91 CTACTTGGTT AATGAGGCTA CCAAACGTCT GACTGCTAGC AATTGGGTTA TCATGGAAAT 57796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTTGGTT AATGAGGCTA CCAAACGTCT GACTGCTAGC AATTGGGTTA TCATGGAAAT 151 TGCTTGTACC AGGTCTTCTG ATGATCTTTT TAAGGCGAGG CAGGCCTACC ATGCTCGATA 57856 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTGTACC ACGTCTTCTG ATGATCTTTT TAAGGCGAGG CAGGCCTACC ATGCTCGATA 211 CAAGAAATCA CTTGAAGAAG ATGTTGCTTA TCATACAAGT GGGGATTTCC GTAAGGTACT 57916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| CAAGAAATCA CTTGAAGAAG ATGTTGCTTA TCATACAAGT GGGGATTTCC GTAAG..... 266 TCGCATATAA GATCTACTGT GCCACATTTA ATTCATTGTT ATTCTAGTGC CAGTCAACTT 57976 .......... .......... .......... .......... .......... .......... 266 TGTCATTAGA TCAGCTGTAG AGAAAAACCT ATAGTCAGCC GAAGTTTGCT AAAGAATCTG 58036 .......... .......... .......... .......... .......... .......... 266 CCACTTTGTT GTTTTCTATA AATCTATAGA CGATTCTGAA ATTACTAGCC GAGAATTTGG 58096 .......... .......... .......... .......... .......... .......... 266 ATGAAATGAA GCTCCACCAT GAGTCTAGGT ATCGGCAATT CTTGGGGCTT TTTTATTTTC 58156 .......... .......... .......... .......... .......... .......... 266 ATTGAAGCGA TTATTTGACT GTTTAGTGAT TCGAGAACCA GAAGATCATT TTGCCTAGTA 58216 .......... .......... .......... .......... .......... .......... 266 AAGCTCATCA ACTCTTCTTT TTGCTCGTTG TGACTTCTTA AGGATGATTC TTTCTACCAT 58276 .......... .......... .......... .......... .......... .......... 266 GTAAGCTGTT GCACTTGCGC CTATTTGCCA CCTTTGGGGT GTTTAAGATG AATGATAAAC 58336 .......... .......... .......... .......... .......... .......... 266 GGTGACAAGT GATGGATAGT CTCCGGTTAC GACCATCCAC CTCCAGCCAT AACGTTGGGG 58396 .......... .......... .......... .......... .......... .......... 266 GTTAACCTCA CCAAGGGAGC GAAGTGGAGA AGGATCACCG TTGTTGTGCT CTTGAGCCAG 58456 .......... .......... .......... .......... .......... .......... 266 GGGAAACTGA GGTTACGGTT TACTGTGTCC AAAAAATAAA ATAAAAGGTT TAAGGATGAT 58516 .......... .......... .......... .......... .......... .......... 266 AGTGTCTGAG ATAACAGTGT AAATAGTTAG ATAAGCACCT TAAAGTTAGA TTTTTGTGTT 58576 .......... .......... .......... .......... .......... .......... 266 GTCTGTCTTT GTCTCCAGTG AATACTGAGA ATACATGCAA CAAATAAATC TTGCAATCAC 58636 .......... .......... .......... .......... .......... .......... 266 CGTCGTTAAG CTGGTCATAT TGTATTAAAC TAATTCCCGA ACAGCTTTTG GTTCCTCTTA 58696 ||| || |||||||||| .......... .......... .......... .......... ....CTTCTG GTTCCTCTTA 282 TAACTGCATT CAGATATGAA GGAGATGAGG TGAACATGAC ATTAGCAAGA AAGGAAGCAA 58756 |||||||||| || ||||||| |||||||||| |||||||||| |||| ||||| |||||||||| TAACTGCATT CACATATGAA GGAGATGAGG TGAACATGAC ATTATCAAGA AAGGAAGCAA 342 ATATACTGCA TGAGAAGATC TCTGACAAGG CTTACAATGA CGAGGAGATC ATCCGAATCA 58816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATACTGCA TGAGAAGATC TCTGACAAGG CTTACAATGA CGAGGAGATC ATCCGAATCA 402 TT 58818 || TT 404 hqPGS_C04HBa0077O05.1+_SGN-E272383+ (57437 57483,57693 57911,58681 58818) ******************************************************************************** EST sequence 262 -strand 792 n (File: SGN-E543098-) 1 GTAAGCTTTT GGTTCCTCTT ATAACTGCAT TCAGATATGA AGGAGATGAG GTGAACATGA 61 CATTAGCAAG AAAGGAAGCA AATATACTGC ATGAGAAGAT CTCTGACAAG GCTTACAATG 121 ACGAGGAGAT CATCCGAATC ATTTCTACTA GGAGTAAAGC ACAGCTGAGT GCTACGTTCA 181 ACCACTACAA TGATCACCAT GGCCATGAAA TCATCAAGGA TCTGGAAGCT GATGATGACG 241 ATGAGTACCT GAAACTACTC AGAGCAGCAA TAGAATGCTT GAAAACCCCA GAGAAACACT 301 TTGAGAAAGT TCTTCGATTG GCTATCAAGA AGCTGGGTAC AGACGAATGG GATCTTACTA 361 GAGTTGTTGC CACTCGGGCT GAAGTTGACA TGGAGCGTAT CAAAGAAGAG TACCATAGGA 421 GGAACAGTGT TACATTGGAC CGTGCAATTG CTGGAGACAC TTCAGGAGAC TATGAAAAAA 481 TGCTTCTGGC TCTGATTGGG CACGGAGATG CTTGAATTAC ATGTGCTGAA ACCTTAAGAT 541 AATAAAAAAA ACTCTACTTA TTTTCTGAAG TTTGAATTTG CTTTTATGAT GTATGGTGTG 601 TACTCTCAGA GTTTGGTTCT GTGTTTATAT GAACTAAAAA CACTCGGGAG TTGAGTTGTG 661 TTTTGTTTTC GCCTTCACTT TTCATTTCGG ACTTCTACTG GTTTTGCCTG CTAAATAAGC 721 ATAGCTTCAA CTTTGGCTTG AACGGATCTT GTTTCTTTAT AACTCAGAAA TAGATTATGT 781 AAAAAAAAAA AA Predicted gene structure (within gDNA segment 58039 to 60254): Exon 1 58679 58893 ( 215 n); cDNA 4 218 ( 215 n); score: 1.000 Intron 1 58894 58981 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 58982 59543 ( 562 n); cDNA 219 780 ( 562 n); score: 1.000 Intron 2 59544 59650 ( 107 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 3 59651 59660 ( 10 n); cDNA 781 790 ( 10 n); score: 0.800 MATCH C04HBa0077O05.1+ SGN-E543098- 1.000 787 0.994 C PGS_C04HBa0077O05.1+_SGN-E543098- (58679 58893,58982 59543,59651 59660) Alignment (genomic DNA sequence = upper lines): AGCTTTTGGT TCCTCTTATA ACTGCATTCA GATATGAAGG AGATGAGGTG AACATGACAT 58738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTTTGGT TCCTCTTATA ACTGCATTCA GATATGAAGG AGATGAGGTG AACATGACAT 63 TAGCAAGAAA GGAAGCAAAT ATACTGCATG AGAAGATCTC TGACAAGGCT TACAATGACG 58798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCAAGAAA GGAAGCAAAT ATACTGCATG AGAAGATCTC TGACAAGGCT TACAATGACG 123 AGGAGATCAT CCGAATCATT TCTACTAGGA GTAAAGCACA GCTGAGTGCT ACGTTCAACC 58858 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGATCAT CCGAATCATT TCTACTAGGA GTAAAGCACA GCTGAGTGCT ACGTTCAACC 183 ACTACAATGA TCACCATGGC CATGAAATCA TCAAGGTAAA ACTCAAACAT TAGAAAGACT 58918 |||||||||| |||||||||| |||||||||| ||||| ACTACAATGA TCACCATGGC CATGAAATCA TCAAG..... .......... .......... 218 TGAAATTATG TTAGTTACCA TTGTTTAAAA GGGATCTATT CATTGTACTG TGTGATGATG 58978 .......... .......... .......... .......... .......... .......... 218 CAGGATCTGG AAGCTGATGA TGACGATGAG TACCTGAAAC TACTCAGAGC AGCAATAGAA 59038 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GATCTGG AAGCTGATGA TGACGATGAG TACCTGAAAC TACTCAGAGC AGCAATAGAA 275 TGCTTGAAAA CCCCAGAGAA ACACTTTGAG AAAGTTCTTC GATTGGCTAT CAAGAAGCTG 59098 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTGAAAA CCCCAGAGAA ACACTTTGAG AAAGTTCTTC GATTGGCTAT CAAGAAGCTG 335 GGTACAGACG AATGGGATCT TACTAGAGTT GTTGCCACTC GGGCTGAAGT TGACATGGAG 59158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTACAGACG AATGGGATCT TACTAGAGTT GTTGCCACTC GGGCTGAAGT TGACATGGAG 395 CGTATCAAAG AAGAGTACCA TAGGAGGAAC AGTGTTACAT TGGACCGTGC AATTGCTGGA 59218 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTATCAAAG AAGAGTACCA TAGGAGGAAC AGTGTTACAT TGGACCGTGC AATTGCTGGA 455 GACACTTCAG GAGACTATGA AAAAATGCTT CTGGCTCTGA TTGGGCACGG AGATGCTTGA 59278 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACACTTCAG GAGACTATGA AAAAATGCTT CTGGCTCTGA TTGGGCACGG AGATGCTTGA 515 ATTACATGTG CTGAAACCTT AAGATAATAA AAAAAACTCT ACTTATTTTC TGAAGTTTGA 59338 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTACATGTG CTGAAACCTT AAGATAATAA AAAAAACTCT ACTTATTTTC TGAAGTTTGA 575 ATTTGCTTTT ATGATGTATG GTGTGTACTC TCAGAGTTTG GTTCTGTGTT TATATGAACT 59398 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGCTTTT ATGATGTATG GTGTGTACTC TCAGAGTTTG GTTCTGTGTT TATATGAACT 635 AAAAACACTC GGGAGTTGAG TTGTGTTTTG TTTTCGCCTT CACTTTTCAT TTCGGACTTC 59458 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAACACTC GGGAGTTGAG TTGTGTTTTG TTTTCGCCTT CACTTTTCAT TTCGGACTTC 695 TACTGGTTTT GCCTGCTAAA TAAGCATAGC TTCAACTTTG GCTTGAACGG ATCTTGTTTC 59518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTGGTTTT GCCTGCTAAA TAAGCATAGC TTCAACTTTG GCTTGAACGG ATCTTGTTTC 755 TTTATAACTC AGAAATAGAT TATGTATCTT GGTTCGTATC TCATTTAGTA CCTCCTAATT 59578 |||||||||| |||||||||| ||||| TTTATAACTC AGAAATAGAT TATGT..... .......... .......... .......... 780 GGATTGTGAC GCGTTGCCGT ATCATTTATC CACCTAAACA GGACCATTTT CGCCCATATA 59638 .......... .......... .......... .......... .......... .......... 780 CCACACTAGT ACAAACATAA AA 59660 ||| | || || .......... ..AAAAAAAA AA 790 hqPGS_C04HBa0077O05.1+_SGN-E543098- (58679 58893,58982 59543) ******************************************************************************** EST sequence 142 +strand 722 n (File: SGN-E357915+) 1 TTATAACTGC ATTCAGATAT GAAGGAGATG AGGTGAACAT GACATTAGCA AGAAAGGAAG 61 CAAATATACT GCATGAGAAG ATCTCTGACA AGGCTTACAA TGACGAGGAG ATCATCCGAA 121 TCATTTCTAC TAGGAGTAAA GCACAGCTGA GTGCTACGTT CAACCACTAC AATGATCACC 181 ATGGCCATGA AATCATCAAG GATCTGGAAG CTGATGATGA CGATGAGTAC CTGAAACTAC 241 TCAGAGCAGC AATAGAATGC TTGAAAACCC CAGAGAAACA CTTTGAGAAA GTTCTTCGAT 301 TGGCTATCAA GAAGCTGGGT ACAGACGAAT GGGATCTTAC TAGAGTTGTT GCCACTCGGG 361 CTGAAGTTGA CATGGAGCGT ATCAAAGAAG AGTACCATAG GAGGAACAGT GTTACATTGG 421 ACCGTGCAAT TGCTGGAGAC ACTTCAGGAG ACTATGAAAA AATGCTTCTG GCTCTGATTG 481 GGCACGGAGA TGCTTGAATT ACATGTGCTG AAACCTTAAG ATAATAAAAA AAACTCTACT 541 TATTTTCTGA AGTTTGAATT TGCTTTTATG ATGTATGGTG TGTACTCTCA GAGTTTGGTT 601 CTGTGTTTAT ATGAACTAAA AACACTCGGG AGTTGAGTTG TGGTTTGTTT TCGCCTTCAC 661 TTTTCATTTC GGACTTCTAC TGGTTTTGCC TGCTAATAAG CATAGCTTCA ACTTTGGCTT 721 GA Predicted gene structure (within gDNA segment 58094 to 60114): Exon 1 58694 58893 ( 200 n); cDNA 1 200 ( 200 n); score: 1.000 Intron 1 58894 58981 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 58982 59504 ( 523 n); cDNA 201 722 ( 522 n); score: 0.996 MATCH C04HBa0077O05.1+ SGN-E357915+ 0.997 723 1.001 C PGS_C04HBa0077O05.1+_SGN-E357915+ (58694 58893,58982 59504) Alignment (genomic DNA sequence = upper lines): TTATAACTGC ATTCAGATAT GAAGGAGATG AGGTGAACAT GACATTAGCA AGAAAGGAAG 58753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATAACTGC ATTCAGATAT GAAGGAGATG AGGTGAACAT GACATTAGCA AGAAAGGAAG 60 CAAATATACT GCATGAGAAG ATCTCTGACA AGGCTTACAA TGACGAGGAG ATCATCCGAA 58813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATATACT GCATGAGAAG ATCTCTGACA AGGCTTACAA TGACGAGGAG ATCATCCGAA 120 TCATTTCTAC TAGGAGTAAA GCACAGCTGA GTGCTACGTT CAACCACTAC AATGATCACC 58873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTCTAC TAGGAGTAAA GCACAGCTGA GTGCTACGTT CAACCACTAC AATGATCACC 180 ATGGCCATGA AATCATCAAG GTAAAACTCA AACATTAGAA AGACTTGAAA TTATGTTAGT 58933 |||||||||| |||||||||| ATGGCCATGA AATCATCAAG .......... .......... .......... .......... 200 TACCATTGTT TAAAAGGGAT CTATTCATTG TACTGTGTGA TGATGCAGGA TCTGGAAGCT 58993 || |||||||||| .......... .......... .......... .......... ........GA TCTGGAAGCT 212 GATGATGACG ATGAGTACCT GAAACTACTC AGAGCAGCAA TAGAATGCTT GAAAACCCCA 59053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGATGACG ATGAGTACCT GAAACTACTC AGAGCAGCAA TAGAATGCTT GAAAACCCCA 272 GAGAAACACT TTGAGAAAGT TCTTCGATTG GCTATCAAGA AGCTGGGTAC AGACGAATGG 59113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAACACT TTGAGAAAGT TCTTCGATTG GCTATCAAGA AGCTGGGTAC AGACGAATGG 332 GATCTTACTA GAGTTGTTGC CACTCGGGCT GAAGTTGACA TGGAGCGTAT CAAAGAAGAG 59173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTTACTA GAGTTGTTGC CACTCGGGCT GAAGTTGACA TGGAGCGTAT CAAAGAAGAG 392 TACCATAGGA GGAACAGTGT TACATTGGAC CGTGCAATTG CTGGAGACAC TTCAGGAGAC 59233 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCATAGGA GGAACAGTGT TACATTGGAC CGTGCAATTG CTGGAGACAC TTCAGGAGAC 452 TATGAAAAAA TGCTTCTGGC TCTGATTGGG CACGGAGATG CTTGAATTAC ATGTGCTGAA 59293 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGAAAAAA TGCTTCTGGC TCTGATTGGG CACGGAGATG CTTGAATTAC ATGTGCTGAA 512 ACCTTAAGAT AATAAAAAAA ACTCTACTTA TTTTCTGAAG TTTGAATTTG CTTTTATGAT 59353 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTTAAGAT AATAAAAAAA ACTCTACTTA TTTTCTGAAG TTTGAATTTG CTTTTATGAT 572 GTATGGTGTG TACTCTCAGA GTTTGGTTCT GTGTTTATAT GAACTAAAAA CACTCGGGAG 59413 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATGGTGTG TACTCTCAGA GTTTGGTTCT GTGTTTATAT GAACTAAAAA CACTCGGGAG 632 TTGAGTTGTG TTTTGTTTTC GCCTTCACTT TTCATTTCGG ACTTCTACTG GTTTTGCCTG 59473 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGTTGTG GTTTGTTTTC GCCTTCACTT TTCATTTCGG ACTTCTACTG GTTTTGCCTG 692 CTAAATAAGC ATAGCTTCAA CTTTGGCTTG A 59504 || ||||||| |||||||||| |||||||||| | CT-AATAAGC ATAGCTTCAA CTTTGGCTTG A 722 hqPGS_C04HBa0077O05.1+_SGN-E357915+ (58694 58893,58982 59504) ******************************************************************************** EST sequence 131 +strand 621 n (File: SGN-E356531+) 1 TTATAACTGC ATTCAGATAT GAAGGAGATG AGGTGAACAT GACATTAGCA AGAAAGGAAG 61 CAAATATACT GCATGAGAAG ATCTCTGACA AGGCTTACAA TGACGAGGAG ATCATCCGAA 121 TCATTTCTAC TAGGAGTAAA GCACAGCTGA GTGCTACGTT CAACCACTAC AATGATCACC 181 ATGGCCATGA AATCATCAAG GATCTGGAAG CTGATGATGA CGATGAGTAC CTGAAACTAC 241 TCAGAGCAGC AATAGAATGC TTGAAAACCC CAGAGAAACA CTTTGAGAAA GTTCTTCGAT 301 TGGCTATCAA GAAGCTGGGT ACAGACGAAT GGGATCTTAC TAGAGTTGTT GCCACTCGGG 361 CTGAAGTTGA CATGGAGCGT ATCAAAGAAG AGTACCATAG GAGGAACAGT GTTACATTGG 421 ACCGTGCAAT TGCTGGAGAC ACTTCAGGAG ACTATGAAAA AATGCTTCTG GCTCTGATTG 481 GGCACGGAGA TGCTTGAATT ACATGTGCTG AAACCTTAAG ATAATAAAAA AAACTCTACT 541 TATTTTCTGA AGTTTGAATT TGCTTTTATG ATGTATGGTG TGTACTCTCA GAGTTTGGTT 601 CTGTGTTTAT ATGAACTAAA A Predicted gene structure (within gDNA segment 58094 to 60012): Exon 1 58694 58893 ( 200 n); cDNA 1 200 ( 200 n); score: 1.000 Intron 1 58894 58981 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 58982 59402 ( 421 n); cDNA 201 621 ( 421 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E356531+ 1.000 621 1.000 C PGS_C04HBa0077O05.1+_SGN-E356531+ (58694 58893,58982 59402) Alignment (genomic DNA sequence = upper lines): TTATAACTGC ATTCAGATAT GAAGGAGATG AGGTGAACAT GACATTAGCA AGAAAGGAAG 58753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATAACTGC ATTCAGATAT GAAGGAGATG AGGTGAACAT GACATTAGCA AGAAAGGAAG 60 CAAATATACT GCATGAGAAG ATCTCTGACA AGGCTTACAA TGACGAGGAG ATCATCCGAA 58813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATATACT GCATGAGAAG ATCTCTGACA AGGCTTACAA TGACGAGGAG ATCATCCGAA 120 TCATTTCTAC TAGGAGTAAA GCACAGCTGA GTGCTACGTT CAACCACTAC AATGATCACC 58873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTCTAC TAGGAGTAAA GCACAGCTGA GTGCTACGTT CAACCACTAC AATGATCACC 180 ATGGCCATGA AATCATCAAG GTAAAACTCA AACATTAGAA AGACTTGAAA TTATGTTAGT 58933 |||||||||| |||||||||| ATGGCCATGA AATCATCAAG .......... .......... .......... .......... 200 TACCATTGTT TAAAAGGGAT CTATTCATTG TACTGTGTGA TGATGCAGGA TCTGGAAGCT 58993 || |||||||||| .......... .......... .......... .......... ........GA TCTGGAAGCT 212 GATGATGACG ATGAGTACCT GAAACTACTC AGAGCAGCAA TAGAATGCTT GAAAACCCCA 59053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGATGACG ATGAGTACCT GAAACTACTC AGAGCAGCAA TAGAATGCTT GAAAACCCCA 272 GAGAAACACT TTGAGAAAGT TCTTCGATTG GCTATCAAGA AGCTGGGTAC AGACGAATGG 59113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAACACT TTGAGAAAGT TCTTCGATTG GCTATCAAGA AGCTGGGTAC AGACGAATGG 332 GATCTTACTA GAGTTGTTGC CACTCGGGCT GAAGTTGACA TGGAGCGTAT CAAAGAAGAG 59173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTTACTA GAGTTGTTGC CACTCGGGCT GAAGTTGACA TGGAGCGTAT CAAAGAAGAG 392 TACCATAGGA GGAACAGTGT TACATTGGAC CGTGCAATTG CTGGAGACAC TTCAGGAGAC 59233 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCATAGGA GGAACAGTGT TACATTGGAC CGTGCAATTG CTGGAGACAC TTCAGGAGAC 452 TATGAAAAAA TGCTTCTGGC TCTGATTGGG CACGGAGATG CTTGAATTAC ATGTGCTGAA 59293 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGAAAAAA TGCTTCTGGC TCTGATTGGG CACGGAGATG CTTGAATTAC ATGTGCTGAA 512 ACCTTAAGAT AATAAAAAAA ACTCTACTTA TTTTCTGAAG TTTGAATTTG CTTTTATGAT 59353 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTTAAGAT AATAAAAAAA ACTCTACTTA TTTTCTGAAG TTTGAATTTG CTTTTATGAT 572 GTATGGTGTG TACTCTCAGA GTTTGGTTCT GTGTTTATAT GAACTAAAA 59402 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GTATGGTGTG TACTCTCAGA GTTTGGTTCT GTGTTTATAT GAACTAAAA 621 hqPGS_C04HBa0077O05.1+_SGN-E356531+ (58694 58893,58982 59402) ******************************************************************************** EST sequence 57 +strand 621 n (File: SGN-E353616+) 1 TGAACATGAC ATTAGCAAGA AAGGAAGCAA ATATACTGCA TGAGAAGATC TCTGACAAGG 61 CTTACAATGA CGAGGAGATC ATCCGAATCA TTTCTACTAG GAGTAAAGCA CAGCTGAGTG 121 CTACGTTCAA CCACTACAAT GATCACCATG GCCATGAAAT CATCAAGGAT CTGGAAGCTG 181 ATGATGACGA TGAGTACCTG AAACTACTCA GAGCAGCAAT AGAATGCTTG AAAACCCCAG 241 AGAAACACTT TGAGAAAGTT CTTCGATTGG CTATCAAGAA GCTGGGTACA GACGAATGGG 301 ATCTTACTAG AGTTGTTGCC ACTCGGGCTG AAGTTGACAT GGAGCGTATC AAAGAAGAGT 361 ACCATAGGAG GAACAGTGTT ACATTGGACC GTGCAATTGC TGGAGACACT TCAGGAGACT 421 ATGAAAAAAT GCTTCTGGCT CTGATTGGGC ACGGAGATGC TTGAATTACA TGTGCTGAAA 481 CCTTAAGATA ATAAAAAAAA CTCTACTTAT TTTCTGAAGT TTGAATTTGC TTTTATGATG 541 TATGGTGTGT ACTCTCAGAG TTTGGTTCTG TGTTTATATG AACTAAAAAC ACTCGGGAGT 601 TGAGTTGTGT TTAAAAAAAA A Predicted gene structure (within gDNA segment 58127 to 60126): Exon 1 58727 58893 ( 167 n); cDNA 1 167 ( 167 n); score: 1.000 Intron 1 58894 58981 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 58982 59426 ( 445 n); cDNA 168 612 ( 445 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E353616+ 1.000 612 0.986 C PGS_C04HBa0077O05.1+_SGN-E353616+ (58727 58893,58982 59426) Alignment (genomic DNA sequence = upper lines): TGAACATGAC ATTAGCAAGA AAGGAAGCAA ATATACTGCA TGAGAAGATC TCTGACAAGG 58786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACATGAC ATTAGCAAGA AAGGAAGCAA ATATACTGCA TGAGAAGATC TCTGACAAGG 60 CTTACAATGA CGAGGAGATC ATCCGAATCA TTTCTACTAG GAGTAAAGCA CAGCTGAGTG 58846 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTACAATGA CGAGGAGATC ATCCGAATCA TTTCTACTAG GAGTAAAGCA CAGCTGAGTG 120 CTACGTTCAA CCACTACAAT GATCACCATG GCCATGAAAT CATCAAGGTA AAACTCAAAC 58906 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CTACGTTCAA CCACTACAAT GATCACCATG GCCATGAAAT CATCAAG... .......... 167 ATTAGAAAGA CTTGAAATTA TGTTAGTTAC CATTGTTTAA AAGGGATCTA TTCATTGTAC 58966 .......... .......... .......... .......... .......... .......... 167 TGTGTGATGA TGCAGGATCT GGAAGCTGAT GATGACGATG AGTACCTGAA ACTACTCAGA 59026 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GATCT GGAAGCTGAT GATGACGATG AGTACCTGAA ACTACTCAGA 212 GCAGCAATAG AATGCTTGAA AACCCCAGAG AAACACTTTG AGAAAGTTCT TCGATTGGCT 59086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCAATAG AATGCTTGAA AACCCCAGAG AAACACTTTG AGAAAGTTCT TCGATTGGCT 272 ATCAAGAAGC TGGGTACAGA CGAATGGGAT CTTACTAGAG TTGTTGCCAC TCGGGCTGAA 59146 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAGAAGC TGGGTACAGA CGAATGGGAT CTTACTAGAG TTGTTGCCAC TCGGGCTGAA 332 GTTGACATGG AGCGTATCAA AGAAGAGTAC CATAGGAGGA ACAGTGTTAC ATTGGACCGT 59206 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGACATGG AGCGTATCAA AGAAGAGTAC CATAGGAGGA ACAGTGTTAC ATTGGACCGT 392 GCAATTGCTG GAGACACTTC AGGAGACTAT GAAAAAATGC TTCTGGCTCT GATTGGGCAC 59266 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATTGCTG GAGACACTTC AGGAGACTAT GAAAAAATGC TTCTGGCTCT GATTGGGCAC 452 GGAGATGCTT GAATTACATG TGCTGAAACC TTAAGATAAT AAAAAAAACT CTACTTATTT 59326 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGATGCTT GAATTACATG TGCTGAAACC TTAAGATAAT AAAAAAAACT CTACTTATTT 512 TCTGAAGTTT GAATTTGCTT TTATGATGTA TGGTGTGTAC TCTCAGAGTT TGGTTCTGTG 59386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGAAGTTT GAATTTGCTT TTATGATGTA TGGTGTGTAC TCTCAGAGTT TGGTTCTGTG 572 TTTATATGAA CTAAAAACAC TCGGGAGTTG AGTTGTGTTT 59426 |||||||||| |||||||||| |||||||||| |||||||||| TTTATATGAA CTAAAAACAC TCGGGAGTTG AGTTGTGTTT 612 hqPGS_C04HBa0077O05.1+_SGN-E353616+ (58727 58893,58982 59426) ******************************************************************************** EST sequence 58 +strand 607 n (File: SGN-E353633+) 1 AAGAAAGGAA GCAAATATAC TGCATGAGAA GATCTCTGAC AAGGCTTACA ATGACGAGGA 61 GATCATCCGA ATCATTTCTA CTAGGAGTAA AGCACAGCTG AGTGCTACGT TCAACCACTA 121 CAATGATCAC CATGGCCATG AAATCATCAA GGATCTGGAA GCTGATGATG ACGATGAGTA 181 CCTGAAACTA CTCAGAGCAG CAATAGAATG CTTGAAAACC CCAGAGAAAC ACTTTGAGAA 241 AGTTCTTCGA TTGGCTATCA AGAAGCTGGG TACAGACGAA TGGGATCTTA CTAGAGTTGT 301 TGCCACTCGG GCTGAAGTTG ACATGGAGCG TATCAAAGAA GAGTACCATA GGAGGAACAG 361 TGTTACATTG GACCGTGCAA TTGCTGGAGA CACTTCAGGA GACTATGAAA AAATGCTTCT 421 GGCTCTGATT GGGCACGGAG ATGCTTGAAT TACATGTGCT GAAACCTTAA GATAATAAAA 481 AAAACTCTAC TTATTTTCTG AAGTTTGAAT TTGCTTTTAT GATGTATGGT GTGTACTCTC 541 AGAGTTTGGT TCTGTGTTTA TATGAACTAA AAACACTCGG GAGTTGAGTT GTGTTTAAAA 601 AAAAAAA Predicted gene structure (within gDNA segment 58143 to 60146): Exon 1 58743 58893 ( 151 n); cDNA 1 151 ( 151 n); score: 1.000 Intron 1 58894 58981 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 58982 59426 ( 445 n); cDNA 152 596 ( 445 n); score: 1.000 PPA cDNA 597 607 MATCH C04HBa0077O05.1+ SGN-E353633+ 1.000 596 0.982 C PGS_C04HBa0077O05.1+_SGN-E353633+ (58743 58893,58982 59426) Alignment (genomic DNA sequence = upper lines): AAGAAAGGAA GCAAATATAC TGCATGAGAA GATCTCTGAC AAGGCTTACA ATGACGAGGA 58802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAAGGAA GCAAATATAC TGCATGAGAA GATCTCTGAC AAGGCTTACA ATGACGAGGA 60 GATCATCCGA ATCATTTCTA CTAGGAGTAA AGCACAGCTG AGTGCTACGT TCAACCACTA 58862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCATCCGA ATCATTTCTA CTAGGAGTAA AGCACAGCTG AGTGCTACGT TCAACCACTA 120 CAATGATCAC CATGGCCATG AAATCATCAA GGTAAAACTC AAACATTAGA AAGACTTGAA 58922 |||||||||| |||||||||| |||||||||| | CAATGATCAC CATGGCCATG AAATCATCAA G......... .......... .......... 151 ATTATGTTAG TTACCATTGT TTAAAAGGGA TCTATTCATT GTACTGTGTG ATGATGCAGG 58982 | .......... .......... .......... .......... .......... .........G 152 ATCTGGAAGC TGATGATGAC GATGAGTACC TGAAACTACT CAGAGCAGCA ATAGAATGCT 59042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTGGAAGC TGATGATGAC GATGAGTACC TGAAACTACT CAGAGCAGCA ATAGAATGCT 212 TGAAAACCCC AGAGAAACAC TTTGAGAAAG TTCTTCGATT GGCTATCAAG AAGCTGGGTA 59102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAACCCC AGAGAAACAC TTTGAGAAAG TTCTTCGATT GGCTATCAAG AAGCTGGGTA 272 CAGACGAATG GGATCTTACT AGAGTTGTTG CCACTCGGGC TGAAGTTGAC ATGGAGCGTA 59162 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGACGAATG GGATCTTACT AGAGTTGTTG CCACTCGGGC TGAAGTTGAC ATGGAGCGTA 332 TCAAAGAAGA GTACCATAGG AGGAACAGTG TTACATTGGA CCGTGCAATT GCTGGAGACA 59222 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAGAAGA GTACCATAGG AGGAACAGTG TTACATTGGA CCGTGCAATT GCTGGAGACA 392 CTTCAGGAGA CTATGAAAAA ATGCTTCTGG CTCTGATTGG GCACGGAGAT GCTTGAATTA 59282 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCAGGAGA CTATGAAAAA ATGCTTCTGG CTCTGATTGG GCACGGAGAT GCTTGAATTA 452 CATGTGCTGA AACCTTAAGA TAATAAAAAA AACTCTACTT ATTTTCTGAA GTTTGAATTT 59342 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGTGCTGA AACCTTAAGA TAATAAAAAA AACTCTACTT ATTTTCTGAA GTTTGAATTT 512 GCTTTTATGA TGTATGGTGT GTACTCTCAG AGTTTGGTTC TGTGTTTATA TGAACTAAAA 59402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTTTATGA TGTATGGTGT GTACTCTCAG AGTTTGGTTC TGTGTTTATA TGAACTAAAA 572 ACACTCGGGA GTTGAGTTGT GTTT 59426 |||||||||| |||||||||| |||| ACACTCGGGA GTTGAGTTGT GTTT 596 hqPGS_C04HBa0077O05.1+_SGN-E353633+ (58743 58893,58982 59426) ******************************************************************************** EST sequence 119 +strand 612 n (File: SGN-E277083+) 1 ATATACTGCA TGAGAAGATC TCTGACAAGG CTTACAATGA CGAGGAGATC ATCCGAATCA 61 TTTCTACTAG GAGTAAAGCA CAGCTGAGTG CTACGTTCAA CCACTACAAT GATCACCATG 121 GCCATGAAAT CATCAAGGAT CTGGAAGCTG ATGATGACGA TGAGTACCTG AAACTACTCA 181 GAGCAGCAAT AGAATGCTTG AAAACCCCAG AGAAACACTT TGAGAAAGTT CTTCGATTGG 241 CTATCAAGAA GCTGGGTACA GACGAATGGG ATCTTACTAG AGTTGTTGCC ACTCGGGCTG 301 AAGTTGACAT GGAGCGTATC AAAGAAGAGT ACCATAGGAG GAACAGTGTT ACATTGGACC 361 GTGCAATTGC TGGAGACACT TCAGGAGACT ATGAAAAAAT GCTTCTGGCT CTGATTGGGC 421 ACGGAGATGC TTGAATTACA TGTGCTGAAA CCTTAAGATA ATAAAAAAAA CTCTACTTAT 481 TTTCTGAAGT TTGAATTTGC TTTTATGATG TATGGTGTGT ACTCTCAGAG TTTGGTTCTG 541 TGTTTATATG AACTAAAAAC ACTCGGGAGT TGAGTTGTGT TTTGTTTTCG CCTTCACTTT 601 TCAAAAAAAA AA Predicted gene structure (within gDNA segment 58157 to 60147): Exon 1 58757 58893 ( 137 n); cDNA 1 137 ( 137 n); score: 1.000 Intron 1 58894 58981 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 58982 59447 ( 466 n); cDNA 138 603 ( 466 n); score: 1.000 MATCH C04HBa0077O05.1+ SGN-E277083+ 1.000 603 0.985 C PGS_C04HBa0077O05.1+_SGN-E277083+ (58757 58893,58982 59447) Alignment (genomic DNA sequence = upper lines): ATATACTGCA TGAGAAGATC TCTGACAAGG CTTACAATGA CGAGGAGATC ATCCGAATCA 58816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATACTGCA TGAGAAGATC TCTGACAAGG CTTACAATGA CGAGGAGATC ATCCGAATCA 60 TTTCTACTAG GAGTAAAGCA CAGCTGAGTG CTACGTTCAA CCACTACAAT GATCACCATG 58876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTACTAG GAGTAAAGCA CAGCTGAGTG CTACGTTCAA CCACTACAAT GATCACCATG 120 GCCATGAAAT CATCAAGGTA AAACTCAAAC ATTAGAAAGA CTTGAAATTA TGTTAGTTAC 58936 |||||||||| ||||||| GCCATGAAAT CATCAAG... .......... .......... .......... .......... 137 CATTGTTTAA AAGGGATCTA TTCATTGTAC TGTGTGATGA TGCAGGATCT GGAAGCTGAT 58996 ||||| |||||||||| .......... .......... .......... .......... .....GATCT GGAAGCTGAT 152 GATGACGATG AGTACCTGAA ACTACTCAGA GCAGCAATAG AATGCTTGAA AACCCCAGAG 59056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGACGATG AGTACCTGAA ACTACTCAGA GCAGCAATAG AATGCTTGAA AACCCCAGAG 212 AAACACTTTG AGAAAGTTCT TCGATTGGCT ATCAAGAAGC TGGGTACAGA CGAATGGGAT 59116 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACACTTTG AGAAAGTTCT TCGATTGGCT ATCAAGAAGC TGGGTACAGA CGAATGGGAT 272 CTTACTAGAG TTGTTGCCAC TCGGGCTGAA GTTGACATGG AGCGTATCAA AGAAGAGTAC 59176 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTACTAGAG TTGTTGCCAC TCGGGCTGAA GTTGACATGG AGCGTATCAA AGAAGAGTAC 332 CATAGGAGGA ACAGTGTTAC ATTGGACCGT GCAATTGCTG GAGACACTTC AGGAGACTAT 59236 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAGGAGGA ACAGTGTTAC ATTGGACCGT GCAATTGCTG GAGACACTTC AGGAGACTAT 392 GAAAAAATGC TTCTGGCTCT GATTGGGCAC GGAGATGCTT GAATTACATG TGCTGAAACC 59296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAAATGC TTCTGGCTCT GATTGGGCAC GGAGATGCTT GAATTACATG TGCTGAAACC 452 TTAAGATAAT AAAAAAAACT CTACTTATTT TCTGAAGTTT GAATTTGCTT TTATGATGTA 59356 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGATAAT AAAAAAAACT CTACTTATTT TCTGAAGTTT GAATTTGCTT TTATGATGTA 512 TGGTGTGTAC TCTCAGAGTT TGGTTCTGTG TTTATATGAA CTAAAAACAC TCGGGAGTTG 59416 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTGTAC TCTCAGAGTT TGGTTCTGTG TTTATATGAA CTAAAAACAC TCGGGAGTTG 572 AGTTGTGTTT TGTTTTCGCC TTCACTTTTC A 59447 |||||||||| |||||||||| |||||||||| | AGTTGTGTTT TGTTTTCGCC TTCACTTTTC A 603 hqPGS_C04HBa0077O05.1+_SGN-E277083+ (58757 58893,58982 59447) ******************************************************************************** EST sequence 176 -strand 464 n (File: SGN-E238753-) 1 GTACCTGAAA CTACTCAGAG CAGCAATAGA ATGCTTGAAA ACCCCAGAAA ACACTTTGAG 61 AAAGTTCTTC GATTGGCTAT CAAGAAGCTG GGTACAGACG AATGGGATCT TACTAGAGTT 121 GTTGCCACTC GGGCTGAAGT TGACATGGAG CGTATCAAAG AAGAGTACCA TAGGAGGAAC 181 AGTGTTACAT TGGACCGTGC AATTGCTGGA GACACTTCAG GAGACTATGA AAAAATGCTT 241 CTGGCTCTGA TTGGGCACGG AGATGCTTGA ATTACATGTG CTGAAACCTT AAGATAATAA 301 AAAAAACTCT ACTTATTTTC TGAAGTTTGA ATTTGCTTTT ATGATGTATG GTGTGTACTC 361 TCAGAGTTTG GTTCTGTGTT TATATGAACT AAAAACACTC GGGAGTTGAG TTGTGTTTTG 421 TTTTCGCCTT CCCTTTTCCA AAAAAAAAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 58398 to 60369): Exon 1 59008 59446 ( 439 n); cDNA 1 438 ( 438 n); score: 0.995 PPA cDNA 440 464 MATCH C04HBa0077O05.1+ SGN-E238753- 0.995 439 0.946 C PGS_C04HBa0077O05.1+_SGN-E238753- (59008 59446) Alignment (genomic DNA sequence = upper lines): GTACCTGAAA CTACTCAGAG CAGCAATAGA ATGCTTGAAA ACCCCAGAGA AACACTTTGA 59067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| GTACCTGAAA CTACTCAGAG CAGCAATAGA ATGCTTGAAA ACCCCAGA-A AACACTTTGA 59 GAAAGTTCTT CGATTGGCTA TCAAGAAGCT GGGTACAGAC GAATGGGATC TTACTAGAGT 59127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGTTCTT CGATTGGCTA TCAAGAAGCT GGGTACAGAC GAATGGGATC TTACTAGAGT 119 TGTTGCCACT CGGGCTGAAG TTGACATGGA GCGTATCAAA GAAGAGTACC ATAGGAGGAA 59187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGCCACT CGGGCTGAAG TTGACATGGA GCGTATCAAA GAAGAGTACC ATAGGAGGAA 179 CAGTGTTACA TTGGACCGTG CAATTGCTGG AGACACTTCA GGAGACTATG AAAAAATGCT 59247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTGTTACA TTGGACCGTG CAATTGCTGG AGACACTTCA GGAGACTATG AAAAAATGCT 239 TCTGGCTCTG ATTGGGCACG GAGATGCTTG AATTACATGT GCTGAAACCT TAAGATAATA 59307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGGCTCTG ATTGGGCACG GAGATGCTTG AATTACATGT GCTGAAACCT TAAGATAATA 299 AAAAAAACTC TACTTATTTT CTGAAGTTTG AATTTGCTTT TATGATGTAT GGTGTGTACT 59367 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAACTC TACTTATTTT CTGAAGTTTG AATTTGCTTT TATGATGTAT GGTGTGTACT 359 CTCAGAGTTT GGTTCTGTGT TTATATGAAC TAAAAACACT CGGGAGTTGA GTTGTGTTTT 59427 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGAGTTT GGTTCTGTGT TTATATGAAC TAAAAACACT CGGGAGTTGA GTTGTGTTTT 419 GTTTTCGCCT TCACTTTTC 59446 |||||||||| || |||||| GTTTTCGCCT TCCCTTTTC 438 hqPGS_C04HBa0077O05.1+_SGN-E238753- (59008 59446) ******************************************************************************** EST sequence 115 +strand 479 n (File: SGN-E311278+) 1 GAGAAAGTTC TTCGATTGGC TATCAAGAAG CTGGGTACAG ACGAATGGGA TCTTACTAGA 61 GTTGTTGCCA CTCGGGCTGA AGTTGACATG GAGCGTATCA AAGAAGAGTA CCATAGGAGG 121 AACAGTGTTA CATTGGACCG TGCAATTGCT GGAGACACTT CAGGAGACTA TGAAAAAATG 181 CTTCTGGCTC TGATTGGGCA CGGAGATGCT TGAATTACAT GTGCTGAAAC CTTAAGATAA 241 TAAAAAAAAC TCTACTTATT TTCTGAAGTT TGAATTTGCT TTTATGATGT ATGGTGTGTA 301 CTCTCAGAGT TTGGTTCTGT GTTTATATGA ACTAAAAACA CTCGGGAGTT GAGTTGTGTT 361 TTGTTTTCGC CTTCACTTTT CATTTCGGAC TTCTACTGGT TTTGCCTGCT AAATAAGCAT 421 AGCTTCAACT TTGGCTTGGA AAAAAAAAAA AAAAAGAAAA AAAGAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 58466 to 60523): Exon 1 59066 59503 ( 438 n); cDNA 1 438 ( 438 n); score: 1.000 PPA cDNA 440 463 MATCH C04HBa0077O05.1+ SGN-E311278+ 1.000 438 0.914 C PGS_C04HBa0077O05.1+_SGN-E311278+ (59066 59503) Alignment (genomic DNA sequence = upper lines): GAGAAAGTTC TTCGATTGGC TATCAAGAAG CTGGGTACAG ACGAATGGGA TCTTACTAGA 59125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAAGTTC TTCGATTGGC TATCAAGAAG CTGGGTACAG ACGAATGGGA TCTTACTAGA 60 GTTGTTGCCA CTCGGGCTGA AGTTGACATG GAGCGTATCA AAGAAGAGTA CCATAGGAGG 59185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTTGCCA CTCGGGCTGA AGTTGACATG GAGCGTATCA AAGAAGAGTA CCATAGGAGG 120 AACAGTGTTA CATTGGACCG TGCAATTGCT GGAGACACTT CAGGAGACTA TGAAAAAATG 59245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAGTGTTA CATTGGACCG TGCAATTGCT GGAGACACTT CAGGAGACTA TGAAAAAATG 180 CTTCTGGCTC TGATTGGGCA CGGAGATGCT TGAATTACAT GTGCTGAAAC CTTAAGATAA 59305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTGGCTC TGATTGGGCA CGGAGATGCT TGAATTACAT GTGCTGAAAC CTTAAGATAA 240 TAAAAAAAAC TCTACTTATT TTCTGAAGTT TGAATTTGCT TTTATGATGT ATGGTGTGTA 59365 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAAAAAAC TCTACTTATT TTCTGAAGTT TGAATTTGCT TTTATGATGT ATGGTGTGTA 300 CTCTCAGAGT TTGGTTCTGT GTTTATATGA ACTAAAAACA CTCGGGAGTT GAGTTGTGTT 59425 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTCAGAGT TTGGTTCTGT GTTTATATGA ACTAAAAACA CTCGGGAGTT GAGTTGTGTT 360 TTGTTTTCGC CTTCACTTTT CATTTCGGAC TTCTACTGGT TTTGCCTGCT AAATAAGCAT 59485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTTTCGC CTTCACTTTT CATTTCGGAC TTCTACTGGT TTTGCCTGCT AAATAAGCAT 420 AGCTTCAACT TTGGCTTG 59503 |||||||||| |||||||| AGCTTCAACT TTGGCTTG 438 hqPGS_C04HBa0077O05.1+_SGN-E311278+ (59066 59503) ******************************************************************************** EST sequence 177 -strand 404 n (File: SGN-E238977-) 1 AAAGTTCTTC GATTGGCTAT CAAGAAGCTG GGTACAGACG AATGGGATCT TACTAGAGTT 61 GTTGCCACTC GGGCTGAAGT TGACATGGAG CGTATCAAAG AAGAGTACCA TAGGAGGAAC 121 AGTGTTACAT TGGACCGTGC AATTGCTGGA GACACTTCAG GAGACTATGA AAAAATGCTT 181 CTGGCTCTGA TTGGGCACGG AGATGCTTGA ATTACATGTG CTGAAACCTT AAGATAATAA 241 AAAAAACTCT ACTTATTTTC TGAAGTTTGA ATTTGCTTTT ATGATGTATG GTGTGTACTC 301 TCAGAGTTTG GTTCTGTGTT TATATGAACT AAAAACACTC GGGAGTTGAG TTGTGTTTTG 361 TTTTCGCCTT CCCTTTTCCA AAAAAAAAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 58459 to 60369): Exon 1 59069 59446 ( 378 n); cDNA 1 378 ( 378 n); score: 0.997 PPA cDNA 380 404 MATCH C04HBa0077O05.1+ SGN-E238977- 0.997 378 0.936 C PGS_C04HBa0077O05.1+_SGN-E238977- (59069 59446) Alignment (genomic DNA sequence = upper lines): AAAGTTCTTC GATTGGCTAT CAAGAAGCTG GGTACAGACG AATGGGATCT TACTAGAGTT 59128 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTCTTC GATTGGCTAT CAAGAAGCTG GGTACAGACG AATGGGATCT TACTAGAGTT 60 GTTGCCACTC GGGCTGAAGT TGACATGGAG CGTATCAAAG AAGAGTACCA TAGGAGGAAC 59188 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCCACTC GGGCTGAAGT TGACATGGAG CGTATCAAAG AAGAGTACCA TAGGAGGAAC 120 AGTGTTACAT TGGACCGTGC AATTGCTGGA GACACTTCAG GAGACTATGA AAAAATGCTT 59248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGTTACAT TGGACCGTGC AATTGCTGGA GACACTTCAG GAGACTATGA AAAAATGCTT 180 CTGGCTCTGA TTGGGCACGG AGATGCTTGA ATTACATGTG CTGAAACCTT AAGATAATAA 59308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGCTCTGA TTGGGCACGG AGATGCTTGA ATTACATGTG CTGAAACCTT AAGATAATAA 240 AAAAAACTCT ACTTATTTTC TGAAGTTTGA ATTTGCTTTT ATGATGTATG GTGTGTACTC 59368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAACTCT ACTTATTTTC TGAAGTTTGA ATTTGCTTTT ATGATGTATG GTGTGTACTC 300 TCAGAGTTTG GTTCTGTGTT TATATGAACT AAAAACACTC GGGAGTTGAG TTGTGTTTTG 59428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGAGTTTG GTTCTGTGTT TATATGAACT AAAAACACTC GGGAGTTGAG TTGTGTTTTG 360 TTTTCGCCTT CACTTTTC 59446 |||||||||| | |||||| TTTTCGCCTT CCCTTTTC 378 hqPGS_C04HBa0077O05.1+_SGN-E238977- (59069 59446) ******************************************************************************** EST sequence 279 -strand 252 n (File: SGN-E309089-) 1 CTTGAATTAC ATGTGCTGAA ACCTTAACAT AATAAAAAAA ACTTTACTTA TTTTCTGAAG 61 TTTGAATTTG CTTTTATGAT GTATGGTGTG TACTCTCAGA GTTTGGTTCT GTGTTTATAT 121 GAACTAAAAA CACTCGGGAG TTGAGTTGTG TTTTGTTTTC GCCTTCACTT TTCATTTCGG 181 ACTTCTACTG GTTTTGCCTG CTAAATAAGC ATAGCTTCAA CTTTGGCTTT GAAAAAAAAA 241 AAAAAAAAAA CT Predicted gene structure (within gDNA segment 58664 to 60332): Exon 1 59274 59502 ( 229 n); cDNA 1 229 ( 229 n); score: 0.991 PPA cDNA 232 251 MATCH C04HBa0077O05.1+ SGN-E309089- 0.991 229 0.909 C PGS_C04HBa0077O05.1+_SGN-E309089- (59274 59502) Alignment (genomic DNA sequence = upper lines): CTTGAATTAC ATGTGCTGAA ACCTTAAGAT AATAAAAAAA ACTCTACTTA TTTTCTGAAG 59333 |||||||||| |||||||||| ||||||| || |||||||||| ||| |||||| |||||||||| CTTGAATTAC ATGTGCTGAA ACCTTAACAT AATAAAAAAA ACTTTACTTA TTTTCTGAAG 60 TTTGAATTTG CTTTTATGAT GTATGGTGTG TACTCTCAGA GTTTGGTTCT GTGTTTATAT 59393 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAATTTG CTTTTATGAT GTATGGTGTG TACTCTCAGA GTTTGGTTCT GTGTTTATAT 120 GAACTAAAAA CACTCGGGAG TTGAGTTGTG TTTTGTTTTC GCCTTCACTT TTCATTTCGG 59453 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTAAAAA CACTCGGGAG TTGAGTTGTG TTTTGTTTTC GCCTTCACTT TTCATTTCGG 180 ACTTCTACTG GTTTTGCCTG CTAAATAAGC ATAGCTTCAA CTTTGGCTT 59502 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACTTCTACTG GTTTTGCCTG CTAAATAAGC ATAGCTTCAA CTTTGGCTT 229 hqPGS_C04HBa0077O05.1+_SGN-E309089- (59274 59502) ******************************************************************************** EST sequence 6 -strand 781 n (File: SGN-E547325-) 1 CGAGGAAATG CCTATCACTC TAACAGAAGT GGAAAAGCAA CATGAGCTGA GTGGAAATCA 61 AGAAAGCAAG ATTCGTAGCA AGGTGAAGAA GCAGTTGTCG GAAGCAAAGA GCAAGGAACT 121 TAGTGGAAGT AACATCTTTG GACCTCCCAT AGAAGTTCCT CCAAGATCAT CAAAAGTTGC 181 ACGTTCATTG CAACCCGAAG AAAGCAAAGA CATGGGTGAA CCTGCTCCAC GAGTTGTGCG 241 CACATCTGTC AAGGTTTCTA ATCCTTCTGG TGGTCAAAGT AGTATCTTGT TTGGCGGTGA 301 GCCTGTTGTG GAGCCAGTAA AGAAAATACA TAACCAGAAA GTTGCAGAGT TGAACGGCAA 361 TGGCATTTTC AAGGGAGACG CTGTCACTCC TCCTGGATCT TCCGAGAAGT CACTGAGCAG 421 GTCTAAGCTG AGAGAAATGA GTGGTAGCGG TATATTCTCC GATGGTAAAG CTGAATCCAG 481 AGTTTGCTAT GGTGGCGTTC GTAAACCACC AGGTGGAGAG AGCAGCATCA GATTATTTTA 541 AGTAAACGAT CACATCATAC TGCCCGATAC TTATGTTAAC CTGTAAATGC AAACACTTCG 601 TCTCTGCATC TGTCTAGTAA AACCTTCTAC GCAATGTGGT TTAGGAATGA GGATTGTAAA 661 TTTTAAAAGT GTCATATAGA CAATATTTAC ACCCTCATTT TGATTCAAAA TACAGGAATA 721 TTATCCTAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA CTCGAGGGGG GCCCGTACCC 781 A Predicted gene structure (within gDNA segment 62858 to 53824): Exon 1 60465 60214 ( 252 n); cDNA 11 262 ( 252 n); score: 0.774 Intron 1 60213 60127 ( 87 n); Pd: 0.966 (s: 0.92), Pa: 0.997 (s: 0.82) Exon 2 60126 59866 ( 261 n); cDNA 263 529 ( 267 n); score: 0.797 Intron 2 59865 55007 (4859 n); Pd: 0.910 (s: 0.88), Pa: 0.000 (s: 0) Exon 3 55006 54994 ( 13 n); cDNA 530 542 ( 13 n); score: 0.846 PPA cDNA 731 761 MATCH C04HBa0077O05.1- SGN-E547325- 0.786 526 0.673 C PGS_C04HBa0077O05.1-_SGN-E547325- (60465 60214,60126 59866,55006 54994) Alignment (genomic DNA sequence = upper lines): CCTATCACAC TTACAGAAGT GGCAAAACAG AGAGAGTTGA GCGGAACACT AGAAAGTGAT 60406 |||||||| | | |||||||| || ||| || ||| ||| | |||| | |||||| | CCTATCACTC TAACAGAAGT GGAAAAGCAA CATGAGCTGA GTGGAAATCA AGAAAGCAAG 70 TCAGATAGCA ATATGAAGAA GCAGCTTTCA GATGCAAAGA GCAAGGAACT CAGTGGAAAT 60346 ||||| | ||||||| |||| | || || ||||||| |||||||||| ||||||| | ATTCGTAGCA AGGTGAAGAA GCAGTTGTCG GAAGCAAAGA GCAAGGAACT TAGTGGAAGT 130 GACATATTTG GCCCTCCCGC AGAAATTCCT CCTAGATCTT TGGCTGCTGC CCGATCCATA 60286 |||| |||| | |||||| |||| ||||| || ||||| | | ||| || || | AACATCTTTG GACCTCCCAT AGAAGTTCCT CCAAGATCAT CAAAAGTTGC ACGTTCATTG 190 GAGTCAAAAG AAAGCAAAGA CATGGGTGAA CCTGCTCCAC GACTTGTACG TACGTCTGTC 60226 | | ||| |||||||||| |||||||||| |||||||||| || |||| || || |||||| CAACCCGAAG AAAGCAAAGA CATGGGTGAA CCTGCTCCAC GAGTTGTGCG CACATCTGTC 250 AAGGTTTCTA ATGTGAGTTG TGTACTAGAC ATGTTTTCTT ATTCTCATTT CTGTCTACAG 60166 |||||||||| || AAGGTTTCTA AT........ .......... .......... .......... .......... 262 ACTTGTTATG TGTTCTCATG TGGCTGTCCT ACTTTGTAGC CTGCTGGTGG TCAAAGCAAT 60106 | || ||||||| |||||| | | .......... .......... .......... .........C CTTCTGGTGG TCAAAGTAGT 283 ATTTTGTTTG GTGATGAACC TGTTGTCAAC ACAGTAAAGA AAATACATAA CCAGAAGTTT 60046 || ||||||| | | ||| || |||||| | ||||||||| |||||||||| |||||| || ATCTTGTTTG GCGGTGAGCC TGTTGTGGAG CCAGTAAAGA AAATACATAA CCAGAAAGTT 343 GCAGAGTTGA CCGGCAATGA CATTTTCAAG GGAGA----- T-ATTCCTCC TGGATCTGCA 59992 |||||||||| |||||||| |||||||||| ||||| | | |||||| ||||||| | GCAGAGTTGA ACGGCAATGG CATTTTCAAG GGAGACGCTG TCACTCCTCC TGGATCTTCC 403 GAAAAGCCAC TGAGCAGAGC AAAGCTGAGA GAAATGAGTG GAAATGATAT TTTTTCTGAT 59932 || ||| ||| ||||||| | ||||||||| |||||||||| | | | ||| || || ||| GAGAAGTCAC TGAGCAGGTC TAAGCTGAGA GAAATGAGTG GTAGCGGTAT ATTCTCCGAT 463 GGAAAAGTTG AATCCAGAGA TTATTTTGGT GGCGTTCGTA AACCACCAGG CGGAGAAAGC 59872 || |||| || ||||||||| || | |||| |||||||||| |||||||||| ||||| ||| GGTAAAGCTG AATCCAGAGT TTGCTATGGT GGCGTTCGTA AACCACCAGG TGGAGAGAGC 523 AGCATCGCGC TGGTTTAGAT AAATGTCATC AGACTGCTGC TATGTTTGAC CTGTAGTGTT 59812 |||||| AGCATC.... .......... .......... .......... .......... .......... 529 CCTGCAACAT TTCACTTCTA ATGTTTCATG GGTTTTAGAA TTGAGGGTTG TAGATGATAT 59752 .......... .......... .......... .......... .......... .......... 529 GTGTTTAACC ATGTTGTACG GACAACTTCT AAACTATAAT TTACATAAAC TTGGAGGATT 59692 .......... .......... .......... .......... .......... .......... 529 TGCCTAACAT AGTGTTTTTA AGACATTGGT CTTTTATGTT TGTACTAGTG TGGTATATGG 59632 .......... .......... .......... .......... .......... .......... 529 GCGAAAATGG TCCTGTTTAG GTGGATAAAT GATACGGCAA CGCGTCACAA TCCAATTAGG 59572 .......... .......... .......... .......... .......... .......... 529 AGGTACTAAA TGAGATACGA ACCAAGATAC ATAATCTATT TCTGAGTTAT AAAGAAACAA 59512 .......... .......... .......... .......... .......... .......... 529 GATCCGTTCA AGCCAAAGTT GAAGCTATGC TTATTTAGCA GGCAAAACCA GTAGAAGTCC 59452 .......... .......... .......... .......... .......... .......... 529 GAAATGAAAA GTGAAGGCGA AAACAAAACA CAACTCAACT CCCGAGTGTT TTTAGTTCAT 59392 .......... .......... .......... .......... .......... .......... 529 ATAAACACAG AACCAAACTC TGAGAGTACA CACCATACAT CATAAAAGCA AATTCAAACT 59332 .......... .......... .......... .......... .......... .......... 529 TCAGAAAATA AGTAGAGTTT TTTTTATTAT CTTAAGGTTT CAGCACATGT AATTCAAGCA 59272 .......... .......... .......... .......... .......... .......... 529 TCTCCGTGCC CAATCAGAGC CAGAAGCATT TTTTCATAGT CTCCTGAAGT GTCTCCAGCA 59212 .......... .......... .......... .......... .......... .......... 529 ATTGCACGGT CCAATGTAAC ACTGTTCCTC CTATGGTACT CTTCTTTGAT ACGCTCCATG 59152 .......... .......... .......... .......... .......... .......... 529 TCAACTTCAG CCCGAGTGGC AACAACTCTA GTAAGATCCC ATTCGTCTGT ACCCAGCTTC 59092 .......... .......... .......... .......... .......... .......... 529 TTGATAGCCA ATCGAAGAAC TTTCTCAAAG TGTTTCTCTG GGGTTTTCAA GCATTCTATT 59032 .......... .......... .......... .......... .......... .......... 529 GCTGCTCTGA GTAGTTTCAG GTACTCATCG TCATCATCAG CTTCCAGATC CTGCATCATC 58972 .......... .......... .......... .......... .......... .......... 529 ACACAGTACA ATGAATAGAT CCCTTTTAAA CAATGGTAAC TAACATAATT TCAAGTCTTT 58912 .......... .......... .......... .......... .......... .......... 529 CTAATGTTTG AGTTTTACCT TGATGATTTC ATGGCCATGG TGATCATTGT AGTGGTTGAA 58852 .......... .......... .......... .......... .......... .......... 529 CGTAGCACTC AGCTGTGCTT TACTCCTAGT AGAAATGATT CGGATGATCT CCTCGTCATT 58792 .......... .......... .......... .......... .......... .......... 529 GTAAGCCTTG TCAGAGATCT TCTCATGCAG TATATTTGCT TCCTTTCTTG CTAATGTCAT 58732 .......... .......... .......... .......... .......... .......... 529 GTTCACCTCA TCTCCTTCAT ATCTGAATGC AGTTATAAGA GGAACCAAAA GCTGTTCGGG 58672 .......... .......... .......... .......... .......... .......... 529 AATTAGTTTA ATACAATATG ACCAGCTTAA CGACGGTGAT TGCAAGATTT ATTTGTTGCA 58612 .......... .......... .......... .......... .......... .......... 529 TGTATTCTCA GTATTCACTG GAGACAAAGA CAGACAACAC AAAAATCTAA CTTTAAGGTG 58552 .......... .......... .......... .......... .......... .......... 529 CTTATCTAAC TATTTACACT GTTATCTCAG ACACTATCAT CCTTAAACCT TTTATTTTAT 58492 .......... .......... .......... .......... .......... .......... 529 TTTTTGGACA CAGTAAACCG TAACCTCAGT TTCCCCTGGC TCAAGAGCAC AACAACGGTG 58432 .......... .......... .......... .......... .......... .......... 529 ATCCTTCTCC ACTTCGCTCC CTTGGTGAGG TTAACCCCCA ACGTTATGGC TGGAGGTGGA 58372 .......... .......... .......... .......... .......... .......... 529 TGGTCGTAAC CGGAGACTAT CCATCACTTG TCACCGTTTA TCATTCATCT TAAACACCCC 58312 .......... .......... .......... .......... .......... .......... 529 AAAGGTGGCA AATAGGCGCA AGTGCAACAG CTTACATGGT AGAAAGAATC ATCCTTAAGA 58252 .......... .......... .......... .......... .......... .......... 529 AGTCACAACG AGCAAAAAGA AGAGTTGATG AGCTTTACTA GGCAAAATGA TCTTCTGGTT 58192 .......... .......... .......... .......... .......... .......... 529 CTCGAATCAC TAAACAGTCA AATAATCGCT TCAATGAAAA TAAAAAAGCC CCAAGAATTG 58132 .......... .......... .......... .......... .......... .......... 529 CCGATACCTA GACTCATGGT GGAGCTTCAT TTCATCCAAA TTCTCGGCTA GTAATTTCAG 58072 .......... .......... .......... .......... .......... .......... 529 AATCGTCTAT AGATTTATAG AAAACAACAA AGTGGCAGAT TCTTTAGCAA ACTTCGGCTG 58012 .......... .......... .......... .......... .......... .......... 529 ACTATAGGTT TTTCTCTACA GCTGATCTAA TGACAAAGTT GACTGGCACT AGAATAACAA 57952 .......... .......... .......... .......... .......... .......... 529 TGAATTAAAT GTGGCACAGT AGATCTTATA TGCGAAGTAC CTTACGGAAA TCCCCACTTG 57892 .......... .......... .......... .......... .......... .......... 529 TATGATAAGC AACATCTTCT TCAAGTGATT TCTTGTATCG AGCATGGTAG GCCTGCCTCG 57832 .......... .......... .......... .......... .......... .......... 529 CCTTAAAAAG ATCATCAGAA GACCTGGTAC AAGCAATTTC CATGATAACC CAATTGCTAG 57772 .......... .......... .......... .......... .......... .......... 529 CAGTCAGACG TTTGGTAGCC TCATTAACCA AGTAGGCGTC GCGCTCAGCA GGACTCAAAG 57712 .......... .......... .......... .......... .......... .......... 529 TCCAGAGAAG CACCACACGC TGCAATATCA TGTGAATCAA ATTATATATT AGTCAAAGCA 57652 .......... .......... .......... .......... .......... .......... 529 ATCCTTGGCT AATGTTACCT GTGATTAATA ATGTAGATAT GGACTAGACA AATCTAAGAA 57592 .......... .......... .......... .......... .......... .......... 529 AGTATAAATG AACAAAAAGA AAAACATTCA ATACACCACA ATGATTGATT AAACGGGGTG 57532 .......... .......... .......... .......... .......... .......... 529 TACTCCAACA CAATTTGGAA CAAGAATGGA AAATTGAGAT TAATTAACCT GAAAATCACT 57472 .......... .......... .......... .......... .......... .......... 529 TGTCAGTTCA GAATCCAAGT CCTTGAGAAG ATCCTCTCCA TAAGCAGCAG CATAAGAATC 57412 .......... .......... .......... .......... .......... .......... 529 TCGGATTAAC TTGCGTTGTG CTGCATTCCT ATGAGCCAGA ATCTGAATAA TAAGTTCCTC 57352 .......... .......... .......... .......... .......... .......... 529 ATTTGTGCCC CATCCTGCAA ACGTTTAACC ATGAGTCTTC TGTGGAAAAC AAAATTCAGC 57292 .......... .......... .......... .......... .......... .......... 529 TTCCTGCTTT GCAAGCCCAA ACAACAACAG CAAACTCGAT GTAGTCCCAT AGTCGGGGTC 57232 .......... .......... .......... .......... .......... .......... 529 TGGGGAGGAA CCTAAACCCT ACCTCGTGGA GGTAGATAGG CTGTTCCCAA AACACACAAC 57172 .......... .......... .......... .......... .......... .......... 529 AGAGTAACAG GACATTGAAA ATTAAAGGGA AAGCATAACC TAGAGCATTC AAAAAACAAG 57112 .......... .......... .......... .......... .......... .......... 529 AGCAATAACA ATAACCAACT AATGTGATAA CAGAAGCACA GTAAATAACG AGCAACAAAA 57052 .......... .......... .......... .......... .......... .......... 529 ATTGCAAGAC AGACAACTAT GAGAAAATGC TACTACTACT TGTATTACTG GGGAAATAGG 56992 .......... .......... .......... .......... .......... .......... 529 TACAATGAAA CAAAACTACC ACCAAGCTAT CCCCTTGGAA ACGAGACAAC ATTCAACTAT 56932 .......... .......... .......... .......... .......... .......... 529 TTACTAACCT TCTACCCTAA TCCGTGACCT CCATAACCTT CAATCTAGAA TCATATCATC 56872 .......... .......... .......... .......... .......... .......... 529 GGAAAGCTGA AGTTGCGTCA TGTTTTGTCT AATCACCCCT CCCAACACTT TTTTGGTTTC 56812 .......... .......... .......... .......... .......... .......... 529 CCTCTACGTC TCCTAAAACT CACTACGGCC AACCTCTAAC ATTTCTCCCT AGATCGCTGT 56752 .......... .......... .......... .......... .......... .......... 529 GCACCTCCTC TTCACATATC ATGTCTAAAC CATCTCAGTC TCACTTCCCT CATCTTGTCC 56692 .......... .......... .......... .......... .......... .......... 529 ATCACGGAAG CCACTCCCAC GTTATGTTGG ATATCTTCAT TCTTAATCTT TATCTCTCCT 56632 .......... .......... .......... .......... .......... .......... 529 ACATATCCAC ATCCACCTCA GCGTCCTCAT TTTCGCCACC TCATATCTTT TGACATTAGA 56572 .......... .......... .......... .......... .......... .......... 529 ATTCTTAACT AACCAACACT CCACTCGCCC CATACATCAT AATCAGCCTA ACCACCACGG 56512 .......... .......... .......... .......... .......... .......... 529 AGAATTGGAG TTAATCATTT TTGTCAACAA ATTAATAATC TAGACCAATC ATACGTTTGG 56452 .......... .......... .......... .......... .......... .......... 529 GAAATGACTA CACAGAATCA TAAAGAAAAA TGTCTTCTAC ATATGCCTAC AGTCAAAGAT 56392 .......... .......... .......... .......... .......... .......... 529 CACTAATTTC CTCCAACAAT GAATTAAATA AAAAATCACA CAGCATTTTA CCTAACCGAG 56332 .......... .......... .......... .......... .......... .......... 529 ACAGATTCAA GATTTAGAGT CAGCAGATGG TCTATGTTAC ATTTCGAAAC AATTTTGAAT 56272 .......... .......... .......... .......... .......... .......... 529 AGATCATTCA GATCACAAGA ACCCCATCAA GAACTAAAAC TAAACTAAAC TAGGAAAAAA 56212 .......... .......... .......... .......... .......... .......... 529 CAGTAAGGAA AAGTAAAAAT CAACTGATCA TTCAAGAAAA ATAGCAAATG CAAATATAGA 56152 .......... .......... .......... .......... .......... .......... 529 AAAGAAATCT TGCACTAAAA TCAGGCATAC AAAATCCAAC CAAAGGGGAT CTGGAAGAAA 56092 .......... .......... .......... .......... .......... .......... 529 AAAAAAGTGA AACCTTTAAA AGCTTTTTTG AGTTGCTCAG CATCTTCATA AGGATCTGGA 56032 .......... .......... .......... .......... .......... .......... 529 ACTGATGCTG GAACTTTAAG ACTAGACATT TTTTTTCCCT TTCTTGAGAA TGTGCTGTGT 55972 .......... .......... .......... .......... .......... .......... 529 GTTCTTGAAT TATTTATGAG TCAAAACTAT AGTATATGTA CAATCTCAAG AATATACGTG 55912 .......... .......... .......... .......... .......... .......... 529 GGAACATAAA AAGTGGATTC AGACATTTTT TGCCATCGCA AAAGTCATTG GGATACACGA 55852 .......... .......... .......... .......... .......... .......... 529 TTTTATTATT TTTGTAACGT AACATAACTT TTATGACTAC ACCATTGTAA CGCCACATGT 55792 .......... .......... .......... .......... .......... .......... 529 ACCCAAATTT TGGCTTGTAA TGGCGGAGAG TATTAGGACT TGGGAGGATT AGGTAACCTG 55732 .......... .......... .......... .......... .......... .......... 529 TAACCTCACC AACTGTACTA TATTATCATG TGCCGTTTTT ACTTGTTCAT TATATTTTTT 55672 .......... .......... .......... .......... .......... .......... 529 AAAAAATAAT TTTTTAATAA TATTTTTTAA GTTTAAAGAA ATAAAAAATA AATTACTATT 55612 .......... .......... .......... .......... .......... .......... 529 TTAGAATAAT TTTATCATTA TTATTAAATA CTATTCAATA TTTAATATAT TTTCAAAATA 55552 .......... .......... .......... .......... .......... .......... 529 TTAAATTTAA ATATTCAAAT GACCGATTAC AGTAAAACTT CATTAAATTA ATATAATTGG 55492 .......... .......... .......... .......... .......... .......... 529 GACCATGAAG TAATATTATT ATAGAGAAGT ATATTTAATC GATAAATTAA TATTTATTAA 55432 .......... .......... .......... .......... .......... .......... 529 TTAAAAAATG TTTTAAGGTT CATGTTCATG AGGTTTTGAG TTTAGAGGAA ATTGTGGATA 55372 .......... .......... .......... .......... .......... .......... 529 TCAATTGAAA AATCATTGTT GACAATGAAA CAATACTTTT GAAACCAGTT ATGCGTAAGA 55312 .......... .......... .......... .......... .......... .......... 529 TTATACTTAT CAAATCTTGA ACTATTAGCA ATTTTATGGT GTAGTTTGAA ATGACAATAT 55252 .......... .......... .......... .......... .......... .......... 529 AAACTTTATG ATGCAATAAG AAAAATTAGA AATGTGTTTC AACTAGATTT AAATTTTAAC 55192 .......... .......... .......... .......... .......... .......... 529 ATAAAATAAA TAAAAATGTT AGAATCATAT TTCACTAAAT TGTCATAGAT ATATTTTTGT 55132 .......... .......... .......... .......... .......... .......... 529 AATTTTAAAG AATTATTAAT TGATAATATT ATGGAGTCAT ATATTTAATA AGGATCTTTT 55072 .......... .......... .......... .......... .......... .......... 529 GAAAATATAT TATTTTATTA AGACGAATAG CTTTTTTCAT TAGTCCACAT TAAAATCGAA 55012 .......... .......... .......... .......... .......... .......... 529 AAAAGATATT ATTTAAAG 54994 | ||| |||| ||| .....AGATT ATTTTAAG 542 hqPGS_C04HBa0077O05.1-_SGN-E547325- (60465 60214,60126 59866) ******************************************************************************** EST sequence 155 +strand 734 n (File: SGN-E547326+) 1 CGAGGAAATG CCTATCACTC TAACAGAAGT GGAAAAGCAA CATGAGCTGA GTGGAAATCA 61 AGAAAGCAAG ATTCGTAGCA AGGTGAAGAA GCAGTTGTCG GAAGCAAAGA GCAAGGAACT 121 TAGTGGAAGT AACATCTTTG GACCTCCCAT AGAAGTTCCT CCAAGATCAT CAAAAGTTGC 181 ACGTTCATTG CAACCCGAAG AAAGCAAAGA CATGGGTGAA CCTGCTCCAC GAGTTGTGCG 241 CACATCTGTC AAGGTTTCTA ATCCTTCTGG TGGTCAAAGT AGTATCTTGT TTGGCGGTGA 301 GCCTGTTGTG GAGCCAGTAA AGAAAATACA TAACCAGAAA GTTGCAGAGT TGAACGGCAA 361 TGGCATTTTC AAGGGAGACG CTGTCACTCC TCCTGGATCT TCCGAGAAGT CACTGAGCAG 421 GTCTAAGCTG AGAGAAATGA GTGGTAGCGG TATATTCTCC GATGGTAAAG CTGAATCCAG 481 AGTTTGCTAT GGTGGCGTTC GTAAACCACC AGGTGGAGAG AGCAGCATCA GATTATTTTA 541 AGTAAACGAT CACATCATAC TGCCCGATAC TTATGTTAAC CTGTAAATGC AAACACTTCG 601 TCTCTGCATC TGTCTAGTAA AACCTTCTAC GCAATGTGGT TTAGGAATGA GGATTGTAAA 661 TTTTAAAAGT GTCATATAGA CAATATTTAC ACCCTCATTT TGATTCAGAA TACAGGAATA 721 TTATCCTAAA AAAA Predicted gene structure (within gDNA segment 62848 to 54284): Exon 1 60465 60214 ( 252 n); cDNA 11 262 ( 252 n); score: 0.774 Intron 1 60213 60127 ( 87 n); Pd: 0.966 (s: 0.92), Pa: 0.997 (s: 0.82) Exon 2 60126 59866 ( 261 n); cDNA 263 529 ( 267 n); score: 0.797 Intron 2 59865 55007 (4859 n); Pd: 0.910 (s: 0.88), Pa: 0.000 (s: 0) Exon 3 55006 54994 ( 13 n); cDNA 530 542 ( 13 n); score: 0.846 MATCH C04HBa0077O05.1- SGN-E547326+ 0.786 526 0.717 C PGS_C04HBa0077O05.1-_SGN-E547326+ (60465 60214,60126 59866,55006 54994) Alignment (genomic DNA sequence = upper lines): CCTATCACAC TTACAGAAGT GGCAAAACAG AGAGAGTTGA GCGGAACACT AGAAAGTGAT 60406 |||||||| | | |||||||| || ||| || ||| ||| | |||| | |||||| | CCTATCACTC TAACAGAAGT GGAAAAGCAA CATGAGCTGA GTGGAAATCA AGAAAGCAAG 70 TCAGATAGCA ATATGAAGAA GCAGCTTTCA GATGCAAAGA GCAAGGAACT CAGTGGAAAT 60346 ||||| | ||||||| |||| | || || ||||||| |||||||||| ||||||| | ATTCGTAGCA AGGTGAAGAA GCAGTTGTCG GAAGCAAAGA GCAAGGAACT TAGTGGAAGT 130 GACATATTTG GCCCTCCCGC AGAAATTCCT CCTAGATCTT TGGCTGCTGC CCGATCCATA 60286 |||| |||| | |||||| |||| ||||| || ||||| | | ||| || || | AACATCTTTG GACCTCCCAT AGAAGTTCCT CCAAGATCAT CAAAAGTTGC ACGTTCATTG 190 GAGTCAAAAG AAAGCAAAGA CATGGGTGAA CCTGCTCCAC GACTTGTACG TACGTCTGTC 60226 | | ||| |||||||||| |||||||||| |||||||||| || |||| || || |||||| CAACCCGAAG AAAGCAAAGA CATGGGTGAA CCTGCTCCAC GAGTTGTGCG CACATCTGTC 250 AAGGTTTCTA ATGTGAGTTG TGTACTAGAC ATGTTTTCTT ATTCTCATTT CTGTCTACAG 60166 |||||||||| || AAGGTTTCTA AT........ .......... .......... .......... .......... 262 ACTTGTTATG TGTTCTCATG TGGCTGTCCT ACTTTGTAGC CTGCTGGTGG TCAAAGCAAT 60106 | || ||||||| |||||| | | .......... .......... .......... .........C CTTCTGGTGG TCAAAGTAGT 283 ATTTTGTTTG GTGATGAACC TGTTGTCAAC ACAGTAAAGA AAATACATAA CCAGAAGTTT 60046 || ||||||| | | ||| || |||||| | ||||||||| |||||||||| |||||| || ATCTTGTTTG GCGGTGAGCC TGTTGTGGAG CCAGTAAAGA AAATACATAA CCAGAAAGTT 343 GCAGAGTTGA CCGGCAATGA CATTTTCAAG GGAGA----- T-ATTCCTCC TGGATCTGCA 59992 |||||||||| |||||||| |||||||||| ||||| | | |||||| ||||||| | GCAGAGTTGA ACGGCAATGG CATTTTCAAG GGAGACGCTG TCACTCCTCC TGGATCTTCC 403 GAAAAGCCAC TGAGCAGAGC AAAGCTGAGA GAAATGAGTG GAAATGATAT TTTTTCTGAT 59932 || ||| ||| ||||||| | ||||||||| |||||||||| | | | ||| || || ||| GAGAAGTCAC TGAGCAGGTC TAAGCTGAGA GAAATGAGTG GTAGCGGTAT ATTCTCCGAT 463 GGAAAAGTTG AATCCAGAGA TTATTTTGGT GGCGTTCGTA AACCACCAGG CGGAGAAAGC 59872 || |||| || ||||||||| || | |||| |||||||||| |||||||||| ||||| ||| GGTAAAGCTG AATCCAGAGT TTGCTATGGT GGCGTTCGTA AACCACCAGG TGGAGAGAGC 523 AGCATCGCGC TGGTTTAGAT AAATGTCATC AGACTGCTGC TATGTTTGAC CTGTAGTGTT 59812 |||||| AGCATC.... .......... .......... .......... .......... .......... 529 CCTGCAACAT TTCACTTCTA ATGTTTCATG GGTTTTAGAA TTGAGGGTTG TAGATGATAT 59752 .......... .......... .......... .......... .......... .......... 529 GTGTTTAACC ATGTTGTACG GACAACTTCT AAACTATAAT TTACATAAAC TTGGAGGATT 59692 .......... .......... .......... .......... .......... .......... 529 TGCCTAACAT AGTGTTTTTA AGACATTGGT CTTTTATGTT TGTACTAGTG TGGTATATGG 59632 .......... .......... .......... .......... .......... .......... 529 GCGAAAATGG TCCTGTTTAG GTGGATAAAT GATACGGCAA CGCGTCACAA TCCAATTAGG 59572 .......... .......... .......... .......... .......... .......... 529 AGGTACTAAA TGAGATACGA ACCAAGATAC ATAATCTATT TCTGAGTTAT AAAGAAACAA 59512 .......... .......... .......... .......... .......... .......... 529 GATCCGTTCA AGCCAAAGTT GAAGCTATGC TTATTTAGCA GGCAAAACCA GTAGAAGTCC 59452 .......... .......... .......... .......... .......... .......... 529 GAAATGAAAA GTGAAGGCGA AAACAAAACA CAACTCAACT CCCGAGTGTT TTTAGTTCAT 59392 .......... .......... .......... .......... .......... .......... 529 ATAAACACAG AACCAAACTC TGAGAGTACA CACCATACAT CATAAAAGCA AATTCAAACT 59332 .......... .......... .......... .......... .......... .......... 529 TCAGAAAATA AGTAGAGTTT TTTTTATTAT CTTAAGGTTT CAGCACATGT AATTCAAGCA 59272 .......... .......... .......... .......... .......... .......... 529 TCTCCGTGCC CAATCAGAGC CAGAAGCATT TTTTCATAGT CTCCTGAAGT GTCTCCAGCA 59212 .......... .......... .......... .......... .......... .......... 529 ATTGCACGGT CCAATGTAAC ACTGTTCCTC CTATGGTACT CTTCTTTGAT ACGCTCCATG 59152 .......... .......... .......... .......... .......... .......... 529 TCAACTTCAG CCCGAGTGGC AACAACTCTA GTAAGATCCC ATTCGTCTGT ACCCAGCTTC 59092 .......... .......... .......... .......... .......... .......... 529 TTGATAGCCA ATCGAAGAAC TTTCTCAAAG TGTTTCTCTG GGGTTTTCAA GCATTCTATT 59032 .......... .......... .......... .......... .......... .......... 529 GCTGCTCTGA GTAGTTTCAG GTACTCATCG TCATCATCAG CTTCCAGATC CTGCATCATC 58972 .......... .......... .......... .......... .......... .......... 529 ACACAGTACA ATGAATAGAT CCCTTTTAAA CAATGGTAAC TAACATAATT TCAAGTCTTT 58912 .......... .......... .......... .......... .......... .......... 529 CTAATGTTTG AGTTTTACCT TGATGATTTC ATGGCCATGG TGATCATTGT AGTGGTTGAA 58852 .......... .......... .......... .......... .......... .......... 529 CGTAGCACTC AGCTGTGCTT TACTCCTAGT AGAAATGATT CGGATGATCT CCTCGTCATT 58792 .......... .......... .......... .......... .......... .......... 529 GTAAGCCTTG TCAGAGATCT TCTCATGCAG TATATTTGCT TCCTTTCTTG CTAATGTCAT 58732 .......... .......... .......... .......... .......... .......... 529 GTTCACCTCA TCTCCTTCAT ATCTGAATGC AGTTATAAGA GGAACCAAAA GCTGTTCGGG 58672 .......... .......... .......... .......... .......... .......... 529 AATTAGTTTA ATACAATATG ACCAGCTTAA CGACGGTGAT TGCAAGATTT ATTTGTTGCA 58612 .......... .......... .......... .......... .......... .......... 529 TGTATTCTCA GTATTCACTG GAGACAAAGA CAGACAACAC AAAAATCTAA CTTTAAGGTG 58552 .......... .......... .......... .......... .......... .......... 529 CTTATCTAAC TATTTACACT GTTATCTCAG ACACTATCAT CCTTAAACCT TTTATTTTAT 58492 .......... .......... .......... .......... .......... .......... 529 TTTTTGGACA CAGTAAACCG TAACCTCAGT TTCCCCTGGC TCAAGAGCAC AACAACGGTG 58432 .......... .......... .......... .......... .......... .......... 529 ATCCTTCTCC ACTTCGCTCC CTTGGTGAGG TTAACCCCCA ACGTTATGGC TGGAGGTGGA 58372 .......... .......... .......... .......... .......... .......... 529 TGGTCGTAAC CGGAGACTAT CCATCACTTG TCACCGTTTA TCATTCATCT TAAACACCCC 58312 .......... .......... .......... .......... .......... .......... 529 AAAGGTGGCA AATAGGCGCA AGTGCAACAG CTTACATGGT AGAAAGAATC ATCCTTAAGA 58252 .......... .......... .......... .......... .......... .......... 529 AGTCACAACG AGCAAAAAGA AGAGTTGATG AGCTTTACTA GGCAAAATGA TCTTCTGGTT 58192 .......... .......... .......... .......... .......... .......... 529 CTCGAATCAC TAAACAGTCA AATAATCGCT TCAATGAAAA TAAAAAAGCC CCAAGAATTG 58132 .......... .......... .......... .......... .......... .......... 529 CCGATACCTA GACTCATGGT GGAGCTTCAT TTCATCCAAA TTCTCGGCTA GTAATTTCAG 58072 .......... .......... .......... .......... .......... .......... 529 AATCGTCTAT AGATTTATAG AAAACAACAA AGTGGCAGAT TCTTTAGCAA ACTTCGGCTG 58012 .......... .......... .......... .......... .......... .......... 529 ACTATAGGTT TTTCTCTACA GCTGATCTAA TGACAAAGTT GACTGGCACT AGAATAACAA 57952 .......... .......... .......... .......... .......... .......... 529 TGAATTAAAT GTGGCACAGT AGATCTTATA TGCGAAGTAC CTTACGGAAA TCCCCACTTG 57892 .......... .......... .......... .......... .......... .......... 529 TATGATAAGC AACATCTTCT TCAAGTGATT TCTTGTATCG AGCATGGTAG GCCTGCCTCG 57832 .......... .......... .......... .......... .......... .......... 529 CCTTAAAAAG ATCATCAGAA GACCTGGTAC AAGCAATTTC CATGATAACC CAATTGCTAG 57772 .......... .......... .......... .......... .......... .......... 529 CAGTCAGACG TTTGGTAGCC TCATTAACCA AGTAGGCGTC GCGCTCAGCA GGACTCAAAG 57712 .......... .......... .......... .......... .......... .......... 529 TCCAGAGAAG CACCACACGC TGCAATATCA TGTGAATCAA ATTATATATT AGTCAAAGCA 57652 .......... .......... .......... .......... .......... .......... 529 ATCCTTGGCT AATGTTACCT GTGATTAATA ATGTAGATAT GGACTAGACA AATCTAAGAA 57592 .......... .......... .......... .......... .......... .......... 529 AGTATAAATG AACAAAAAGA AAAACATTCA ATACACCACA ATGATTGATT AAACGGGGTG 57532 .......... .......... .......... .......... .......... .......... 529 TACTCCAACA CAATTTGGAA CAAGAATGGA AAATTGAGAT TAATTAACCT GAAAATCACT 57472 .......... .......... .......... .......... .......... .......... 529 TGTCAGTTCA GAATCCAAGT CCTTGAGAAG ATCCTCTCCA TAAGCAGCAG CATAAGAATC 57412 .......... .......... .......... .......... .......... .......... 529 TCGGATTAAC TTGCGTTGTG CTGCATTCCT ATGAGCCAGA ATCTGAATAA TAAGTTCCTC 57352 .......... .......... .......... .......... .......... .......... 529 ATTTGTGCCC CATCCTGCAA ACGTTTAACC ATGAGTCTTC TGTGGAAAAC AAAATTCAGC 57292 .......... .......... .......... .......... .......... .......... 529 TTCCTGCTTT GCAAGCCCAA ACAACAACAG CAAACTCGAT GTAGTCCCAT AGTCGGGGTC 57232 .......... .......... .......... .......... .......... .......... 529 TGGGGAGGAA CCTAAACCCT ACCTCGTGGA GGTAGATAGG CTGTTCCCAA AACACACAAC 57172 .......... .......... .......... .......... .......... .......... 529 AGAGTAACAG GACATTGAAA ATTAAAGGGA AAGCATAACC TAGAGCATTC AAAAAACAAG 57112 .......... .......... .......... .......... .......... .......... 529 AGCAATAACA ATAACCAACT AATGTGATAA CAGAAGCACA GTAAATAACG AGCAACAAAA 57052 .......... .......... .......... .......... .......... .......... 529 ATTGCAAGAC AGACAACTAT GAGAAAATGC TACTACTACT TGTATTACTG GGGAAATAGG 56992 .......... .......... .......... .......... .......... .......... 529 TACAATGAAA CAAAACTACC ACCAAGCTAT CCCCTTGGAA ACGAGACAAC ATTCAACTAT 56932 .......... .......... .......... .......... .......... .......... 529 TTACTAACCT TCTACCCTAA TCCGTGACCT CCATAACCTT CAATCTAGAA TCATATCATC 56872 .......... .......... .......... .......... .......... .......... 529 GGAAAGCTGA AGTTGCGTCA TGTTTTGTCT AATCACCCCT CCCAACACTT TTTTGGTTTC 56812 .......... .......... .......... .......... .......... .......... 529 CCTCTACGTC TCCTAAAACT CACTACGGCC AACCTCTAAC ATTTCTCCCT AGATCGCTGT 56752 .......... .......... .......... .......... .......... .......... 529 GCACCTCCTC TTCACATATC ATGTCTAAAC CATCTCAGTC TCACTTCCCT CATCTTGTCC 56692 .......... .......... .......... .......... .......... .......... 529 ATCACGGAAG CCACTCCCAC GTTATGTTGG ATATCTTCAT TCTTAATCTT TATCTCTCCT 56632 .......... .......... .......... .......... .......... .......... 529 ACATATCCAC ATCCACCTCA GCGTCCTCAT TTTCGCCACC TCATATCTTT TGACATTAGA 56572 .......... .......... .......... .......... .......... .......... 529 ATTCTTAACT AACCAACACT CCACTCGCCC CATACATCAT AATCAGCCTA ACCACCACGG 56512 .......... .......... .......... .......... .......... .......... 529 AGAATTGGAG TTAATCATTT TTGTCAACAA ATTAATAATC TAGACCAATC ATACGTTTGG 56452 .......... .......... .......... .......... .......... .......... 529 GAAATGACTA CACAGAATCA TAAAGAAAAA TGTCTTCTAC ATATGCCTAC AGTCAAAGAT 56392 .......... .......... .......... .......... .......... .......... 529 CACTAATTTC CTCCAACAAT GAATTAAATA AAAAATCACA CAGCATTTTA CCTAACCGAG 56332 .......... .......... .......... .......... .......... .......... 529 ACAGATTCAA GATTTAGAGT CAGCAGATGG TCTATGTTAC ATTTCGAAAC AATTTTGAAT 56272 .......... .......... .......... .......... .......... .......... 529 AGATCATTCA GATCACAAGA ACCCCATCAA GAACTAAAAC TAAACTAAAC TAGGAAAAAA 56212 .......... .......... .......... .......... .......... .......... 529 CAGTAAGGAA AAGTAAAAAT CAACTGATCA TTCAAGAAAA ATAGCAAATG CAAATATAGA 56152 .......... .......... .......... .......... .......... .......... 529 AAAGAAATCT TGCACTAAAA TCAGGCATAC AAAATCCAAC CAAAGGGGAT CTGGAAGAAA 56092 .......... .......... .......... .......... .......... .......... 529 AAAAAAGTGA AACCTTTAAA AGCTTTTTTG AGTTGCTCAG CATCTTCATA AGGATCTGGA 56032 .......... .......... .......... .......... .......... .......... 529 ACTGATGCTG GAACTTTAAG ACTAGACATT TTTTTTCCCT TTCTTGAGAA TGTGCTGTGT 55972 .......... .......... .......... .......... .......... .......... 529 GTTCTTGAAT TATTTATGAG TCAAAACTAT AGTATATGTA CAATCTCAAG AATATACGTG 55912 .......... .......... .......... .......... .......... .......... 529 GGAACATAAA AAGTGGATTC AGACATTTTT TGCCATCGCA AAAGTCATTG GGATACACGA 55852 .......... .......... .......... .......... .......... .......... 529 TTTTATTATT TTTGTAACGT AACATAACTT TTATGACTAC ACCATTGTAA CGCCACATGT 55792 .......... .......... .......... .......... .......... .......... 529 ACCCAAATTT TGGCTTGTAA TGGCGGAGAG TATTAGGACT TGGGAGGATT AGGTAACCTG 55732 .......... .......... .......... .......... .......... .......... 529 TAACCTCACC AACTGTACTA TATTATCATG TGCCGTTTTT ACTTGTTCAT TATATTTTTT 55672 .......... .......... .......... .......... .......... .......... 529 AAAAAATAAT TTTTTAATAA TATTTTTTAA GTTTAAAGAA ATAAAAAATA AATTACTATT 55612 .......... .......... .......... .......... .......... .......... 529 TTAGAATAAT TTTATCATTA TTATTAAATA CTATTCAATA TTTAATATAT TTTCAAAATA 55552 .......... .......... .......... .......... .......... .......... 529 TTAAATTTAA ATATTCAAAT GACCGATTAC AGTAAAACTT CATTAAATTA ATATAATTGG 55492 .......... .......... .......... .......... .......... .......... 529 GACCATGAAG TAATATTATT ATAGAGAAGT ATATTTAATC GATAAATTAA TATTTATTAA 55432 .......... .......... .......... .......... .......... .......... 529 TTAAAAAATG TTTTAAGGTT CATGTTCATG AGGTTTTGAG TTTAGAGGAA ATTGTGGATA 55372 .......... .......... .......... .......... .......... .......... 529 TCAATTGAAA AATCATTGTT GACAATGAAA CAATACTTTT GAAACCAGTT ATGCGTAAGA 55312 .......... .......... .......... .......... .......... .......... 529 TTATACTTAT CAAATCTTGA ACTATTAGCA ATTTTATGGT GTAGTTTGAA ATGACAATAT 55252 .......... .......... .......... .......... .......... .......... 529 AAACTTTATG ATGCAATAAG AAAAATTAGA AATGTGTTTC AACTAGATTT AAATTTTAAC 55192 .......... .......... .......... .......... .......... .......... 529 ATAAAATAAA TAAAAATGTT AGAATCATAT TTCACTAAAT TGTCATAGAT ATATTTTTGT 55132 .......... .......... .......... .......... .......... .......... 529 AATTTTAAAG AATTATTAAT TGATAATATT ATGGAGTCAT ATATTTAATA AGGATCTTTT 55072 .......... .......... .......... .......... .......... .......... 529 GAAAATATAT TATTTTATTA AGACGAATAG CTTTTTTCAT TAGTCCACAT TAAAATCGAA 55012 .......... .......... .......... .......... .......... .......... 529 AAAAGATATT ATTTAAAG 54994 | ||| |||| ||| .....AGATT ATTTTAAG 542 hqPGS_C04HBa0077O05.1-_SGN-E547326+ (60465 60214,60126 59866) ******************************************************************************** EST sequence 296 +strand 662 n (File: SGN-E546670+) 1 GCCTATCACT CTGACCGAAG TGGCAAAGCA ACGTGAGTTG AGTGGAAATT TAGAAATTGA 61 GTCAGATATC AAAGTCAAGA AGCAGCTATC AGATGCAAAG ACCAAGGAGC TTAGTGGAAA 121 TGATATTTTT GGCCCTCCTG AAGAAGTTCC TCCTAGATCC CTGACTGCTG CACGTTCGAT 181 GGAGTTGAAA GAAAGCAAAG ACATAGGTGA ACCTGCTCCA CGAACTGTAC GCACATCTGT 241 TAGGGTTTCT AATCCTGCTG GTGGTCAAAG CAATATCTTG TTTGGAGATG AACCTGTTGT 301 CGAGACAGCA AAGAAGATAC ATAACCAGAA GTTTGCAGAA TTGACAGGCG ATGACATTTT 361 CAAGGGAGAT ACTTCTCCTG GATCGGCGGA GAAGACACTG AGCAGTGCTA AGCTGAAAGA 421 AATGAGTGGT AATGATATAT TCTCTGATGG AAAAATTGAA TCTAGGGATC ACTTTGGCGG 481 TGTGCGCAAA CCACCTGGTG GAGAAAGCAC TATCAGATTA GTGTAATGTC ATCAAATGGG 541 TCTTATGTTG ACCGGCGGTG CCACATTGTC CTTGCTGTCT GACTAGGTAG AACGACTGGC 601 AGGTATGGAT TGAGGATTGT TAAAGTAGAT ATGTCAGGAG TCTTAATTTG TGACAAAATG 661 CA Predicted gene structure (within gDNA segment 62749 to 56489): Exon 1 60465 60214 ( 252 n); cDNA 2 253 ( 252 n); score: 0.833 Intron 1 60213 60127 ( 87 n); Pd: 0.966 (s: 0.86), Pa: 0.997 (s: 0.94) Exon 2 60126 59866 ( 261 n); cDNA 254 514 ( 261 n); score: 0.870 MATCH C04HBa0077O05.1- SGN-E546670+ 0.852 513 0.775 C PGS_C04HBa0077O05.1-_SGN-E546670+ (60465 60214,60126 59866) Alignment (genomic DNA sequence = upper lines): CCTATCACAC TTACAGAAGT GGCAAAACAG AGAGAGTTGA GCGGAACACT AGAAAGTGAT 60406 |||||||| | | || ||||| |||||| || | ||||||| | |||| | ||||| ||| CCTATCACTC TGACCGAAGT GGCAAAGCAA CGTGAGTTGA GTGGAAATTT AGAAATTGAG 61 TCAGATAGCA ATATGAAGAA GCAGCTTTCA GATGCAAAGA GCAAGGAACT CAGTGGAAAT 60346 ||||||| || | | ||||| |||||| ||| |||||||||| |||||| || ||||||||| TCAGATATCA AAGTCAAGAA GCAGCTATCA GATGCAAAGA CCAAGGAGCT TAGTGGAAAT 121 GACATATTTG GCCCTCCCGC AGAAATTCCT CCTAGATCTT TGGCTGCTGC CCGATCCATA 60286 || || |||| ||||||| | |||| ||||| |||||||| || ||||||| || || || GATATTTTTG GCCCTCCTGA AGAAGTTCCT CCTAGATCCC TGACTGCTGC ACGTTCGATG 181 GAGTCAAAAG AAAGCAAAGA CATGGGTGAA CCTGCTCCAC GACTTGTACG TACGTCTGTC 60226 |||| |||| |||||||||| ||| |||||| |||||||||| || |||||| || ||||| GAGTTGAAAG AAAGCAAAGA CATAGGTGAA CCTGCTCCAC GAACTGTACG CACATCTGTT 241 AAGGTTTCTA ATGTGAGTTG TGTACTAGAC ATGTTTTCTT ATTCTCATTT CTGTCTACAG 60166 | |||||||| || AGGGTTTCTA AT........ .......... .......... .......... .......... 253 ACTTGTTATG TGTTCTCATG TGGCTGTCCT ACTTTGTAGC CTGCTGGTGG TCAAAGCAAT 60106 | |||||||||| |||||||||| .......... .......... .......... .........C CTGCTGGTGG TCAAAGCAAT 274 ATTTTGTTTG GTGATGAACC TGTTGTCAAC ACAGTAAAGA AAATACATAA CCAGAAGTTT 60046 || ||||||| | |||||||| ||||||| | |||| ||||| | |||||||| |||||||||| ATCTTGTTTG GAGATGAACC TGTTGTCGAG ACAGCAAAGA AGATACATAA CCAGAAGTTT 334 GCAGAGTTGA CCGGCAATGA CATTTTCAAG GGAGATATTC CTCCTGGATC TGCAGAAAAG 59986 ||||| |||| | ||| |||| |||||||||| ||||||| | |||||||||| || || ||| GCAGAATTGA CAGGCGATGA CATTTTCAAG GGAGATACTT CTCCTGGATC GGCGGAGAAG 394 CCACTGAGCA GAGCAAAGCT GAGAGAAATG AGTGGAAATG ATATTTTTTC TGATGGAAAA 59926 ||||||||| | || ||||| || ||||||| ||||| |||| |||| || || |||||||||| ACACTGAGCA GTGCTAAGCT GAAAGAAATG AGTGGTAATG ATATATTCTC TGATGGAAAA 454 GTTGAATCCA GAGATTATTT TGGTGGCGTT CGTAAACCAC CAGGCGGAGA AAGCAGCATC 59866 ||||||| | | ||| | || ||| || || || ||||||| | || ||||| ||||| ||| ATTGAATCTA GGGATCACTT TGGCGGTGTG CGCAAACCAC CTGGTGGAGA AAGCACTATC 514 hqPGS_C04HBa0077O05.1-_SGN-E546670+ (60465 60214,60126 59866) ******************************************************************************** EST sequence 215 +strand 792 n (File: SGN-E553956+) 1 CATAATTATG AAACTAATAT CCAAAAAAAG ATGAATATGC TTACCTTCAA AGTTATCTTG 61 ATATTCAACT TCTTGTTCAT TTCCCAGTGT TATGCATCTA TACCATGCCA GACAGTAGCT 121 GATTGCAACT ATTAATTGTG GCAGCAAAGG AACTCCTATT TGTAAAAACT ACACTTGATT 181 CTGCAAACAT TGTGATTTAT ACCCTCCAGA TGATCTGTGA TACTTGATGA TGAATCTGAT 241 TTTATAAGTA AACAATAACT GATTATGATT ATTATATTCC GATTACATAT GATAACATCG 301 GTGATGATCC TTGAAAAAAT AATATAATTA TCTTGGAAAA AAGGATTTCA AATGAAATAA 361 ACCAAAATAT CAATTCAATA CTGAAAAAAG GAGGGGGGCC CGGAAACCCT ATCACACTTA 421 CAGAAGTGGC AAAACAGAGA GAGTTGAGCG GAACTTTAAA AAGTGATTCA GATAGCAATA 481 TGAAGAAGCA GCTTTCAGAT GCAAAGAGCA AGGAACTCAG TGGAAATGAC ATATTTGGCC 541 CTCCCGCAGA AATTCCTCCT AGATCTTTGG CTGCTGCCCG ATCCATAGAG TCAAAAGAAA 601 GCAAAGACAT GGGTGAACCT GCTCCACGAC TTGTACGTAC GTCTGTCAAG GTTTCTAATC 661 CTGCTGGTGG TCAAAGCAAT ATTTTGTTTG GTGATGAACC TGTTGTCAAC ACAGTAAAGA 721 AAATACATAA CCAGAAGTTT GCAGAGTTGA CCGGCAATGA CATTTTCAAG GGAGATATTC 781 CTCCTGGATC TG Predicted gene structure (within gDNA segment 65135 to 59384): Exon 1 64504 64480 ( 25 n); cDNA 305 329 ( 25 n); score: 0.720 Intron 1 64479 62536 (1944 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 62535 62522 ( 14 n); cDNA 330 343 ( 14 n); score: 0.714 Intron 2 62521 60529 (1993 n); Pd: 0.996 (s: 0), Pa: 0.975 (s: 0.69) Exon 3 60528 60214 ( 315 n); cDNA 344 659 ( 316 n); score: 0.906 Intron 3 60213 60127 ( 87 n); Pd: 0.966 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 60126 59994 ( 133 n); cDNA 660 792 ( 133 n); score: 1.000 MATCH C04HBa0077O05.1- SGN-E553956+ 0.934 487 0.615 C PGS_C04HBa0077O05.1-_SGN-E553956+ (64504 64480,62535 62522,60528 60214,60126 59994) Alignment (genomic DNA sequence = upper lines): TGTTAATTTG ACAAATAATA TATTTGTCTA ACAGTGCACA TACACTGAAA ATTTTTGATG 64445 || | || | |||||||| || || TGATCCTTGA AAAAATAATA TAATT..... .......... .......... .......... 329 CAATTTTATG TGGATATATC GCATTCATTG AGTACCCCAA TGATTATGAG ATCACTTGGC 64385 .......... .......... .......... .......... .......... .......... 329 ATAAATGATG ATTCAGTTTG ATCTCAAAAG AAGGATGAAG AGTTTCTTGG TGATGAAACT 64325 .......... .......... .......... .......... .......... .......... 329 CTATCTTGGT GCAATCAGGG CACTAGTGCA TCTTACTAAC AATATTTGAC CAGATATTTG 64265 .......... .......... .......... .......... .......... .......... 329 TTTTGCAGTA AATTTACTGG CAAGATTCAG TTTCTCCCCG ATAAAAGGAC ATTGAAATGG 64205 .......... .......... .......... .......... .......... .......... 329 TGTTGAGCAC ATGATTGAAT ATCCTCGAAG GACCATAGTT ATGTGTTTAT TCTATCCCGA 64145 .......... .......... .......... .......... .......... .......... 329 GGAATCCAAG ACAAAATTGA TTGATTACGC AGATGCAGAA TATTTATCTG ATCCGCATAA 64085 .......... .......... .......... .......... .......... .......... 329 AGCTCTATCT CAAGCACGCT ATGTGTTTGC ATGTGGAGGC ACAATAATAT CCTAGGGATC 64025 .......... .......... .......... .......... .......... .......... 329 AATGAAGCAA ATGTTGCTCT GCAAAAATAA AAGTCCTCCA TGAAGCAAGT CAAAAGTGCG 63965 .......... .......... .......... .......... .......... .......... 329 TCTGGTTGAG ATAAATGACA CACTATATTC AAGAAATGTG TGGTTTTTCT TTTAAAAAGG 63905 .......... .......... .......... .......... .......... .......... 329 AATATACCAA CCACAATGTA CGAAGATTGG AGACATCATC ACAAGAAATT AAGTGATGTT 63845 .......... .......... .......... .......... .......... .......... 329 TTAATCAGGG GGAGTACAAT ACGCGTTGCA CTCTTTTTCT CTTGATCGAG GTTTTTTCCC 63785 .......... .......... .......... .......... .......... .......... 329 ACTGGGTTTT CCTGGCAAGG TTTTTAATGA GGCAACAAAT GGTGCGTATC AAAAGATATG 63725 .......... .......... .......... .......... .......... .......... 329 TGTACTCTTT TTCTTTCACT AGAATTTTTT CCCACAGGGT TTTTCCTAGT AAGGTTTTAA 63665 .......... .......... .......... .......... .......... .......... 329 CGAGGCACAT TATCTATGGA CATCCAAGGG GGAGTGTTAT AAATTCATTG AATGAGTGGA 63605 .......... .......... .......... .......... .......... .......... 329 TAGTCCATAA GGTTGGTACA TGAACAACCA TTCATATTCA CTAGGTTACA TGAACCTTTT 63545 .......... .......... .......... .......... .......... .......... 329 TGGATAAGAA TGTATCTATT TATTATGATA CTTAATATGG TGACCTTTGG AGTGATTTCT 63485 .......... .......... .......... .......... .......... .......... 329 CACTCTATAA ATAGGGTTGT TCATTCACTA TTGTAATATA GATACATATG AGATTTGCAT 63425 .......... .......... .......... .......... .......... .......... 329 ACACTTGAAT AAGAAGAAAG TCTTATCTTC CATCTTACTC CTCTTGTTTT CATCTCTTTA 63365 .......... .......... .......... .......... .......... .......... 329 TATTTATATT GCTATGAGCT TGATTTTATA ACAATACCTT ATTTATTATT TTTCAACTAG 63305 .......... .......... .......... .......... .......... .......... 329 TATCTATCAT ACTTATTGAA CTGAATGATA TTATATTGTG TCTATAAAAT ATTTGTCATC 63245 .......... .......... .......... .......... .......... .......... 329 CGCAATTTTT TTAATGTTAT ATTGGATGAT TATTCTGTTT TTTTAATACG TAATATTTTT 63185 .......... .......... .......... .......... .......... .......... 329 TTATTGAAAT AAAATTTTTA TAATATTTTA TTAATATAAT GTTGATCATA TGCATATTCA 63125 .......... .......... .......... .......... .......... .......... 329 GTTATTGAAA ACAAATAATT TTAATTATTC AAATTTTAGA TTTATTGATC ACATTTTAAT 63065 .......... .......... .......... .......... .......... .......... 329 TAAAATCTCT TAATCTTAAC GAAAACAAAT GAGGCGTTAG ACTTTATTGC CAAACACCTC 63005 .......... .......... .......... .......... .......... .......... 329 TTAATAGAAT CAATTATGTC ATTTTCTCAA TAAATTTTTG TGAGCTGTTA CTATGCACGT 62945 .......... .......... .......... .......... .......... .......... 329 GCCATACTTT AGCACAACAC AAAGGGCCCC ACAATTTCAA ATCTCTAAAA ACCAAACTTT 62885 .......... .......... .......... .......... .......... .......... 329 GCTCTTTTTA TTCAAATTTG AAATGAATTT TGTTTTATAA GATAAAGCAA AGACTTCCCA 62825 .......... .......... .......... .......... .......... .......... 329 TTTTCAAATT TCAGCTAAAA TGGAGAGAGC AACACCTGTA CGGAAGCCTA ACACCTCTGC 62765 .......... .......... .......... .......... .......... .......... 329 CGCCGATCTG CTCACCTGGT CTGAAGTTCC GCCGGCGAAC AACTCAGCTT CTGCCTCCGG 62705 .......... .......... .......... .......... .......... .......... 329 CAATGCATCT CGCTCCGGCG CTCGTTCTCA TCAGGTGAAT TATATTGTGA CTTGTGTTGT 62645 .......... .......... .......... .......... .......... .......... 329 TTGCTTTTAT GATTTGCTAG AGTTTAATTT ATATGCTATT ATATTGTAGC CTTCTGATGG 62585 .......... .......... .......... .......... .......... .......... 329 AATCAGTAAG GTTCTGTTTG GAGGTCAAAT TACTGAAGAG GAAGCTGAGA GCTTGAACAA 62525 | |||| | || .......... .......... .......... .......... .........A TCTTGGAAAA 340 ACGGTATGTA CTGATCTGAA AAGCGAAATG ATTTTTTCAT TTGTTTAATT TATCGTCACA 62465 | | AAG....... .......... .......... .......... .......... .......... 343 TTTTGCTTGG AATTTAATCT TTTTTTTTTA TAAGTAGTGT GTTTTTCTAA TATGTGATTT 62405 .......... .......... .......... .......... .......... .......... 343 ATCCTGATGC TTGTATTACA AAGTTCAGAT CTTCCCCTGA GTTCTCCGAA ATTTTCTATT 62345 .......... .......... .......... .......... .......... .......... 343 TTGTTTCTGA AGCTTCTATA ATTTCTTAGA TCTAGTAATG CAATTTCTTT TTTGGTGTGT 62285 .......... .......... .......... .......... .......... .......... 343 TTGGTAGAGA GGAAAATGTT TTCACTTGTT TGCTGGAGTT TGGTAAATAC TGTCTAAAGA 62225 .......... .......... .......... .......... .......... .......... 343 GCATTTATGT ATAAAAGGAG GAAAGAAAAG ATCTGAGCAT ATATACTATG ACACTGGACC 62165 .......... .......... .......... .......... .......... .......... 343 CTTGTCCCAA CATAGACATG ATCTAAACCC CACTCTGAAC TGGACAACCA ATCTCAGTCA 62105 .......... .......... .......... .......... .......... .......... 343 TGATCTGGGA CCCGTTGTTG ACTCGATAAC TAACCCCGAC CTAATTCAAA TCGAGATTGG 62045 .......... .......... .......... .......... .......... .......... 343 AGGCAGGATC CTGACCCCAT CTGGGTCAAG GTTGCTCTTG ACTTGGGATT CCAGGTTGGG 61985 .......... .......... .......... .......... .......... .......... 343 GTGGGGTCTC GGGTATGGAT CAAGAGTTGG GGTTGGATCC TGAGTGGGGT CAAGTGTTTG 61925 .......... .......... .......... .......... .......... .......... 343 GTCTTAGGTT GAGGTCTTAA GTCTTTTTCG GGGTTGGGAG TCAAGTCTTG GGTTGAGGTC 61865 .......... .......... .......... .......... .......... .......... 343 TTGAGTATAG GGAGTCGTGT CCTTGGTTGG GAGTTAGGTC TAGGTTGGAG ACCGTTCTGA 61805 .......... .......... .......... .......... .......... .......... 343 AAAATATTTT TCTAACTTTG TATAATTAGT CATTTTCCTA TAATAGAAGG AAAGTGAATT 61745 .......... .......... .......... .......... .......... .......... 343 CGTTTGGAAA ACATTGACAA ATTAAATTTT ACACGCCCTT AACTTTCTTG TTATAGTCTG 61685 .......... .......... .......... .......... .......... .......... 343 TTGCGTTTCC TTGTTGAGCT GCTCTGGGAT TTGGATAGCA CATCTAAAAT CTATTGATGA 61625 .......... .......... .......... .......... .......... .......... 343 GTATATCAAT TAAAATGGTT TCACTAATAA GTGATGAGAG AAGCATTCTT TTCTATAGAT 61565 .......... .......... .......... .......... .......... .......... 343 CAATTTCATT TGATTCTGTT TAAGGTTTAT AAAGAAACTG TGATTGACAT CATTAAAGTG 61505 .......... .......... .......... .......... .......... .......... 343 TTAAAATGGA AACATTTCTT AGTGAAAAGT GCACCTTAGA CTTATTTTTG TTATAATCAT 61445 .......... .......... .......... .......... .......... .......... 343 ATTGATTATC CTCTTCTTAT TTTTTTATTG AGTTTCTTGA AGCCGGACTG TCATATTTAT 61385 .......... .......... .......... .......... .......... .......... 343 TATCACTCTC TTCCACATTC TAATTCCAAA ACTAAAAATC AGACTTTTTT TCTGATATGT 61325 .......... .......... .......... .......... .......... .......... 343 AAGAGTTACA TGGCTGCTAC TAATATTTTT GGTAGACTGG TAAAAATATG CACCTACTCT 61265 .......... .......... .......... .......... .......... .......... 343 GCATTCTGCA TATTAGATAT CCCGATCTCC ATGTCCTTTC TTTCGATTCT TTGCTTATCA 61205 .......... .......... .......... .......... .......... .......... 343 TGATTTAGTA TTCAGAGACC TGTGGTGAGG TACTGTTGTG GAGTTCCGAC CAATGGAAGT 61145 .......... .......... .......... .......... .......... .......... 343 AATCCCATTA ATTTAAGAAA CTGAAAAGAC ATGCTATTTT CTGATATGGT CACCCGAAAC 61085 .......... .......... .......... .......... .......... .......... 343 ATTGCAGCCA TTCTAGAAAA TTAGCTCTAT GCTATATATA TTCTTGCTTT TAGACGGGCG 61025 .......... .......... .......... .......... .......... .......... 343 CAAATTTAGC TGATTTGAAA TGTAGCATGC AAGTTAAGTG AAGCTTCTCT ATCAAAAGAC 60965 .......... .......... .......... .......... .......... .......... 343 TCAGAAAGTT GAGAGGTTCC AATGTTTGGA CATGTGGAAT ACATTTTTGG GGTTTACTTT 60905 .......... .......... .......... .......... .......... .......... 343 TCATTGATAT CGAGAGGTTC CAATGTATGG AAAAGAAAAG AAAGAGTCCA GTGACCTTAA 60845 .......... .......... .......... .......... .......... .......... 343 TGGTTTTGAA GTAAATGTTA TCTGGTCCTT ATTCTGCTTG AAACATGCTT TCTCCAGTAA 60785 .......... .......... .......... .......... .......... .......... 343 ACCATGTTCA GGGTACAAAC TGAAGGAGAT GAATGGCAGC AAAATCTTTT CTGCTGATGG 60725 .......... .......... .......... .......... .......... .......... 343 TGAAGATGAT GCATCTGAAT CAGGAGCTGT TAATGGTAAC TTCAACAACA GGACATCTGT 60665 .......... .......... .......... .......... .......... .......... 343 CCGCATTGTT CAGGTACTAT TTAAATCATT ATACGGTAAA ATTATGTTTT ACAGGACTTG 60605 .......... .......... .......... .......... .......... .......... 343 CTGTGTGAGC ATGCTACAAA GTCAGGAAAC TAGTAACTGG CAACTTCACC GTCTAATGAT 60545 .......... .......... .......... .......... .......... .......... 343 TTGTAATTCA TTGCAGCAAG CTGCAAATGG AATAAGCC-A GATATC-ATT CAGTACTGAA 60487 | | |||||| ||||| || | ||||| ||| || ||||||| .......... ......-GA- TTTCAAATGA AATAAACCAA AATATCAATT CAATACTGAA 385 GAAAGGATCT CTCCAAAGAA A-CCTATCAC ACTTACAGAA GTGGCAAAAC AGAGAGAGTT 60428 |||||| | ||| | |||||||| |||||||||| |||||||||| |||||||||| AAAAGGAGGG GGGCCCGGAA ACCCTATCAC ACTTACAGAA GTGGCAAAAC AGAGAGAGTT 445 GAGCGGAACA CTAGAAAGTG ATTCAGATAG CAATATGAAG AAGCAGCTTT CAGATGCAAA 60368 ||||||||| || |||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCGGAACT TTAAAAAGTG ATTCAGATAG CAATATGAAG AAGCAGCTTT CAGATGCAAA 505 GAGCAAGGAA CTCAGTGGAA ATGACATATT TGGCCCTCCC GCAGAAATTC CTCCTAGATC 60308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCAAGGAA CTCAGTGGAA ATGACATATT TGGCCCTCCC GCAGAAATTC CTCCTAGATC 565 TTTGGCTGCT GCCCGATCCA TAGAGTCAAA AGAAAGCAAA GACATGGGTG AACCTGCTCC 60248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGCTGCT GCCCGATCCA TAGAGTCAAA AGAAAGCAAA GACATGGGTG AACCTGCTCC 625 ACGACTTGTA CGTACGTCTG TCAAGGTTTC TAATGTGAGT TGTGTACTAG ACATGTTTTC 60188 |||||||||| |||||||||| |||||||||| |||| ACGACTTGTA CGTACGTCTG TCAAGGTTTC TAAT...... .......... .......... 659 TTATTCTCAT TTCTGTCTAC AGACTTGTTA TGTGTTCTCA TGTGGCTGTC CTACTTTGTA 60128 .......... .......... .......... .......... .......... .......... 659 GCCTGCTGGT GGTCAAAGCA ATATTTTGTT TGGTGATGAA CCTGTTGTCA ACACAGTAAA 60068 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .CCTGCTGGT GGTCAAAGCA ATATTTTGTT TGGTGATGAA CCTGTTGTCA ACACAGTAAA 718 GAAAATACAT AACCAGAAGT TTGCAGAGTT GACCGGCAAT GACATTTTCA AGGGAGATAT 60008 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAATACAT AACCAGAAGT TTGCAGAGTT GACCGGCAAT GACATTTTCA AGGGAGATAT 778 TCCTCCTGGA TCTG 59994 |||||||||| |||| TCCTCCTGGA TCTG 792 hqPGS_C04HBa0077O05.1-_SGN-E553956+ (64504 64480,62535 62522,60528 60214,60126 59994) ******************************************************************************** EST sequence 269 +strand 198 n (File: SGN-E344353+) 1 AGCATCGCGC TGGTTTAGAT AAATGTCATC AGACTGCTGC TATGTTTGAC CTGTAGTGTT 61 CCTGCAACAT TTCACTTCTA ATGTTTCATG GGTTTTAGAA TTGAGGGTTG TAGATGATAT 121 GTGTTTAACC ATGTTGTACG GACAACTTCT AAACTATAAT TTACATAAAC TTGGAGGATT 181 TGCCTAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 60471 to 58965): Exon 1 59871 59685 ( 187 n); cDNA 1 187 ( 187 n); score: 1.000 PPA cDNA 188 198 MATCH C04HBa0077O05.1- SGN-E344353+ 1.000 187 0.944 C PGS_C04HBa0077O05.1-_SGN-E344353+ (59871 59685) Alignment (genomic DNA sequence = upper lines): AGCATCGCGC TGGTTTAGAT AAATGTCATC AGACTGCTGC TATGTTTGAC CTGTAGTGTT 59812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCATCGCGC TGGTTTAGAT AAATGTCATC AGACTGCTGC TATGTTTGAC CTGTAGTGTT 60 CCTGCAACAT TTCACTTCTA ATGTTTCATG GGTTTTAGAA TTGAGGGTTG TAGATGATAT 59752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGCAACAT TTCACTTCTA ATGTTTCATG GGTTTTAGAA TTGAGGGTTG TAGATGATAT 120 GTGTTTAACC ATGTTGTACG GACAACTTCT AAACTATAAT TTACATAAAC TTGGAGGATT 59692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTTAACC ATGTTGTACG GACAACTTCT AAACTATAAT TTACATAAAC TTGGAGGATT 180 TGCCTAA 59685 ||||||| TGCCTAA 187 hqPGS_C04HBa0077O05.1-_SGN-E344353+ (59871 59685) ******************************************************************************** EST sequence 233 +strand 574 n (File: SGN-E324699+) 1 GCAACACCTG TACGGAAGCC TAACACCTCT GCCGCCGATC TGCTCACCTG GTCTGAAGTT 61 CCGCCGGCGA ACAACTCAGC TTCTGCCTCC GGCAATGCAT CTCGCTCCGG CGCTCGTTCT 121 CATCAGCCTT CTGATGGAAT CAGTAAGGTT CTGTTTGGAG GTCAAATTAC TGAAGAGGAA 181 GCTGAGAGCT TGAACAAACG TAAACCATGT TCAGGGTACA AACTGAAGGA GATGAATGGC 241 AGCAAAATCT TTTCTGCTGA TGGTGAAGAT GATGCATCTG AATCAGGAGC TGTTAATGGT 301 AACTTCAACA ACAGGACATC TGTCCGCATT GTTCAGCAAG CTGCAAATGG AATAAGCCAG 361 ATATCATTCA GTACTGAAGA AAGGATCTCT CCAAAGAAAC CTATCACACT TACAGAAGTG 421 GCAAAACAGA GAGAGTTGAG CGGAACACTA GAAAGTGATT CAGATAGCAA TATGAAGAAG 481 CAGCTTTCAG ATGCAAAGAG CAAGGAACTC AGTGGAAATG ACATATTTGG CCCTCCCGCA 541 GAAATTCCTC CTAGATCTTT GGCTGCTGCC CGAT Predicted gene structure (within gDNA segment 63396 to 59681): Exon 1 62796 62671 ( 126 n); cDNA 1 126 ( 126 n); score: 1.000 Intron 1 62670 62596 ( 75 n); Pd: 1.000 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 2 62595 62522 ( 74 n); cDNA 127 200 ( 74 n); score: 1.000 Intron 2 62521 60788 (1734 n); Pd: 0.996 (s: 1.00), Pa: 0.903 (s: 1.00) Exon 3 60787 60652 ( 136 n); cDNA 201 336 ( 136 n); score: 1.000 Intron 3 60651 60529 ( 123 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 4 60528 60291 ( 238 n); cDNA 337 574 ( 238 n); score: 1.000 MATCH C04HBa0077O05.1- SGN-E324699+ 1.000 574 1.000 C PGS_C04HBa0077O05.1-_SGN-E324699+ (62796 62671,62595 62522,60787 60652,60528 60291) Alignment (genomic DNA sequence = upper lines): GCAACACCTG TACGGAAGCC TAACACCTCT GCCGCCGATC TGCTCACCTG GTCTGAAGTT 62737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACACCTG TACGGAAGCC TAACACCTCT GCCGCCGATC TGCTCACCTG GTCTGAAGTT 60 CCGCCGGCGA ACAACTCAGC TTCTGCCTCC GGCAATGCAT CTCGCTCCGG CGCTCGTTCT 62677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCCGGCGA ACAACTCAGC TTCTGCCTCC GGCAATGCAT CTCGCTCCGG CGCTCGTTCT 120 CATCAGGTGA ATTATATTGT GACTTGTGTT GTTTGCTTTT ATGATTTGCT AGAGTTTAAT 62617 |||||| CATCAG.... .......... .......... .......... .......... .......... 126 TTATATGCTA TTATATTGTA GCCTTCTGAT GGAATCAGTA AGGTTCTGTT TGGAGGTCAA 62557 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .CCTTCTGAT GGAATCAGTA AGGTTCTGTT TGGAGGTCAA 165 ATTACTGAAG AGGAAGCTGA GAGCTTGAAC AAACGGTATG TACTGATCTG AAAAGCGAAA 62497 |||||||||| |||||||||| |||||||||| ||||| ATTACTGAAG AGGAAGCTGA GAGCTTGAAC AAACG..... .......... .......... 200 TGATTTTTTC ATTTGTTTAA TTTATCGTCA CATTTTGCTT GGAATTTAAT CTTTTTTTTT 62437 .......... .......... .......... .......... .......... .......... 200 TATAAGTAGT GTGTTTTTCT AATATGTGAT TTATCCTGAT GCTTGTATTA CAAAGTTCAG 62377 .......... .......... .......... .......... .......... .......... 200 ATCTTCCCCT GAGTTCTCCG AAATTTTCTA TTTTGTTTCT GAAGCTTCTA TAATTTCTTA 62317 .......... .......... .......... .......... .......... .......... 200 GATCTAGTAA TGCAATTTCT TTTTTGGTGT GTTTGGTAGA GAGGAAAATG TTTTCACTTG 62257 .......... .......... .......... .......... .......... .......... 200 TTTGCTGGAG TTTGGTAAAT ACTGTCTAAA GAGCATTTAT GTATAAAAGG AGGAAAGAAA 62197 .......... .......... .......... .......... .......... .......... 200 AGATCTGAGC ATATATACTA TGACACTGGA CCCTTGTCCC AACATAGACA TGATCTAAAC 62137 .......... .......... .......... .......... .......... .......... 200 CCCACTCTGA ACTGGACAAC CAATCTCAGT CATGATCTGG GACCCGTTGT TGACTCGATA 62077 .......... .......... .......... .......... .......... .......... 200 ACTAACCCCG ACCTAATTCA AATCGAGATT GGAGGCAGGA TCCTGACCCC ATCTGGGTCA 62017 .......... .......... .......... .......... .......... .......... 200 AGGTTGCTCT TGACTTGGGA TTCCAGGTTG GGGTGGGGTC TCGGGTATGG ATCAAGAGTT 61957 .......... .......... .......... .......... .......... .......... 200 GGGGTTGGAT CCTGAGTGGG GTCAAGTGTT TGGTCTTAGG TTGAGGTCTT AAGTCTTTTT 61897 .......... .......... .......... .......... .......... .......... 200 CGGGGTTGGG AGTCAAGTCT TGGGTTGAGG TCTTGAGTAT AGGGAGTCGT GTCCTTGGTT 61837 .......... .......... .......... .......... .......... .......... 200 GGGAGTTAGG TCTAGGTTGG AGACCGTTCT GAAAAATATT TTTCTAACTT TGTATAATTA 61777 .......... .......... .......... .......... .......... .......... 200 GTCATTTTCC TATAATAGAA GGAAAGTGAA TTCGTTTGGA AAACATTGAC AAATTAAATT 61717 .......... .......... .......... .......... .......... .......... 200 TTACACGCCC TTAACTTTCT TGTTATAGTC TGTTGCGTTT CCTTGTTGAG CTGCTCTGGG 61657 .......... .......... .......... .......... .......... .......... 200 ATTTGGATAG CACATCTAAA ATCTATTGAT GAGTATATCA ATTAAAATGG TTTCACTAAT 61597 .......... .......... .......... .......... .......... .......... 200 AAGTGATGAG AGAAGCATTC TTTTCTATAG ATCAATTTCA TTTGATTCTG TTTAAGGTTT 61537 .......... .......... .......... .......... .......... .......... 200 ATAAAGAAAC TGTGATTGAC ATCATTAAAG TGTTAAAATG GAAACATTTC TTAGTGAAAA 61477 .......... .......... .......... .......... .......... .......... 200 GTGCACCTTA GACTTATTTT TGTTATAATC ATATTGATTA TCCTCTTCTT ATTTTTTTAT 61417 .......... .......... .......... .......... .......... .......... 200 TGAGTTTCTT GAAGCCGGAC TGTCATATTT ATTATCACTC TCTTCCACAT TCTAATTCCA 61357 .......... .......... .......... .......... .......... .......... 200 AAACTAAAAA TCAGACTTTT TTTCTGATAT GTAAGAGTTA CATGGCTGCT ACTAATATTT 61297 .......... .......... .......... .......... .......... .......... 200 TTGGTAGACT GGTAAAAATA TGCACCTACT CTGCATTCTG CATATTAGAT ATCCCGATCT 61237 .......... .......... .......... .......... .......... .......... 200 CCATGTCCTT TCTTTCGATT CTTTGCTTAT CATGATTTAG TATTCAGAGA CCTGTGGTGA 61177 .......... .......... .......... .......... .......... .......... 200 GGTACTGTTG TGGAGTTCCG ACCAATGGAA GTAATCCCAT TAATTTAAGA AACTGAAAAG 61117 .......... .......... .......... .......... .......... .......... 200 ACATGCTATT TTCTGATATG GTCACCCGAA ACATTGCAGC CATTCTAGAA AATTAGCTCT 61057 .......... .......... .......... .......... .......... .......... 200 ATGCTATATA TATTCTTGCT TTTAGACGGG CGCAAATTTA GCTGATTTGA AATGTAGCAT 60997 .......... .......... .......... .......... .......... .......... 200 GCAAGTTAAG TGAAGCTTCT CTATCAAAAG ACTCAGAAAG TTGAGAGGTT CCAATGTTTG 60937 .......... .......... .......... .......... .......... .......... 200 GACATGTGGA ATACATTTTT GGGGTTTACT TTTCATTGAT ATCGAGAGGT TCCAATGTAT 60877 .......... .......... .......... .......... .......... .......... 200 GGAAAAGAAA AGAAAGAGTC CAGTGACCTT AATGGTTTTG AAGTAAATGT TATCTGGTCC 60817 .......... .......... .......... .......... .......... .......... 200 TTATTCTGCT TGAAACATGC TTTCTCCAGT AAACCATGTT CAGGGTACAA ACTGAAGGAG 60757 | |||||||||| |||||||||| |||||||||| .......... .......... .........T AAACCATGTT CAGGGTACAA ACTGAAGGAG 231 ATGAATGGCA GCAAAATCTT TTCTGCTGAT GGTGAAGATG ATGCATCTGA ATCAGGAGCT 60697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAATGGCA GCAAAATCTT TTCTGCTGAT GGTGAAGATG ATGCATCTGA ATCAGGAGCT 291 GTTAATGGTA ACTTCAACAA CAGGACATCT GTCCGCATTG TTCAGGTACT ATTTAAATCA 60637 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GTTAATGGTA ACTTCAACAA CAGGACATCT GTCCGCATTG TTCAG..... .......... 336 TTATACGGTA AAATTATGTT TTACAGGACT TGCTGTGTGA GCATGCTACA AAGTCAGGAA 60577 .......... .......... .......... .......... .......... .......... 336 ACTAGTAACT GGCAACTTCA CCGTCTAATG ATTTGTAATT CATTGCAGCA AGCTGCAAAT 60517 || |||||||||| .......... .......... .......... .......... ........CA AGCTGCAAAT 348 GGAATAAGCC AGATATCATT CAGTACTGAA GAAAGGATCT CTCCAAAGAA ACCTATCACA 60457 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATAAGCC AGATATCATT CAGTACTGAA GAAAGGATCT CTCCAAAGAA ACCTATCACA 408 CTTACAGAAG TGGCAAAACA GAGAGAGTTG AGCGGAACAC TAGAAAGTGA TTCAGATAGC 60397 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTACAGAAG TGGCAAAACA GAGAGAGTTG AGCGGAACAC TAGAAAGTGA TTCAGATAGC 468 AATATGAAGA AGCAGCTTTC AGATGCAAAG AGCAAGGAAC TCAGTGGAAA TGACATATTT 60337 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATGAAGA AGCAGCTTTC AGATGCAAAG AGCAAGGAAC TCAGTGGAAA TGACATATTT 528 GGCCCTCCCG CAGAAATTCC TCCTAGATCT TTGGCTGCTG CCCGAT 60291 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGCCCTCCCG CAGAAATTCC TCCTAGATCT TTGGCTGCTG CCCGAT 574 hqPGS_C04HBa0077O05.1-_SGN-E324699+ (62796 62671,62595 62522,60787 60652,60528 60291) ******************************************************************************** EST sequence 173 +strand 589 n (File: SGN-E304630+) 1 TTTGTTTTAT AAGATAAAGC AAAGACTTCC CATTTTCAAA TTTCAGCTAA AATGGAGAGA 61 GCAACACCTG TACGGAAGCC TAACACCTCT GCCGCCGATC TGCTCACCTG GTCTGAAGTT 121 CCGCCGGCGA ACAACTCAGC TTCTGCCTCC GGCAATGCAT CTCGCTCCGG CGCTCGTTCT 181 CATCAGCCTT CTGATGGAAT CAGTAAGGTT CTGTTTGGAG GTCAAATTAC TGAAGAGGAA 241 GCTGAGAGCT TGAACAAACG TAAACCATGT TCAGGGTACA AACTGAAGGA GATGAATGGC 301 AGCAAAATCT TTTCTGCTGA TGGTGAAGAT GATGCATCTG AATCAGGAGC TGTTAATGGT 361 AACTTCAACA ACAGGACATC TGTCCGCATT GTTCAGCAAG CTGCAAATGG AATAAGCCAG 421 ATATCATTCA GTACTGAAGA AAGGATCTCT CCAAAGAAAC CTATCACACT TACAGAAGTG 481 GCAAAACAGA GAGAGTTGAG CGGAACACTA GAAAGTGATT CAGATAGCAA TATGAAGAAG 541 CAGCTTTCAG ATGCAAAGAG CAAGGAACTC AGTGGAAATG ACATATTTG Predicted gene structure (within gDNA segment 63456 to 59726): Exon 1 62856 62671 ( 186 n); cDNA 1 186 ( 186 n); score: 1.000 Intron 1 62670 62596 ( 75 n); Pd: 1.000 (s: 1.00), Pa: 0.987 (s: 1.00) Exon 2 62595 62522 ( 74 n); cDNA 187 260 ( 74 n); score: 1.000 Intron 2 62521 60788 (1734 n); Pd: 0.996 (s: 1.00), Pa: 0.903 (s: 1.00) Exon 3 60787 60652 ( 136 n); cDNA 261 396 ( 136 n); score: 1.000 Intron 3 60651 60529 ( 123 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 4 60528 60336 ( 193 n); cDNA 397 589 ( 193 n); score: 1.000 MATCH C04HBa0077O05.1- SGN-E304630+ 1.000 589 1.000 C PGS_C04HBa0077O05.1-_SGN-E304630+ (62856 62671,62595 62522,60787 60652,60528 60336) Alignment (genomic DNA sequence = upper lines): TTTGTTTTAT AAGATAAAGC AAAGACTTCC CATTTTCAAA TTTCAGCTAA AATGGAGAGA 62797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTTTTAT AAGATAAAGC AAAGACTTCC CATTTTCAAA TTTCAGCTAA AATGGAGAGA 60 GCAACACCTG TACGGAAGCC TAACACCTCT GCCGCCGATC TGCTCACCTG GTCTGAAGTT 62737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACACCTG TACGGAAGCC TAACACCTCT GCCGCCGATC TGCTCACCTG GTCTGAAGTT 120 CCGCCGGCGA ACAACTCAGC TTCTGCCTCC GGCAATGCAT CTCGCTCCGG CGCTCGTTCT 62677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCCGGCGA ACAACTCAGC TTCTGCCTCC GGCAATGCAT CTCGCTCCGG CGCTCGTTCT 180 CATCAGGTGA ATTATATTGT GACTTGTGTT GTTTGCTTTT ATGATTTGCT AGAGTTTAAT 62617 |||||| CATCAG.... .......... .......... .......... .......... .......... 186 TTATATGCTA TTATATTGTA GCCTTCTGAT GGAATCAGTA AGGTTCTGTT TGGAGGTCAA 62557 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .CCTTCTGAT GGAATCAGTA AGGTTCTGTT TGGAGGTCAA 225 ATTACTGAAG AGGAAGCTGA GAGCTTGAAC AAACGGTATG TACTGATCTG AAAAGCGAAA 62497 |||||||||| |||||||||| |||||||||| ||||| ATTACTGAAG AGGAAGCTGA GAGCTTGAAC AAACG..... .......... .......... 260 TGATTTTTTC ATTTGTTTAA TTTATCGTCA CATTTTGCTT GGAATTTAAT CTTTTTTTTT 62437 .......... .......... .......... .......... .......... .......... 260 TATAAGTAGT GTGTTTTTCT AATATGTGAT TTATCCTGAT GCTTGTATTA CAAAGTTCAG 62377 .......... .......... .......... .......... .......... .......... 260 ATCTTCCCCT GAGTTCTCCG AAATTTTCTA TTTTGTTTCT GAAGCTTCTA TAATTTCTTA 62317 .......... .......... .......... .......... .......... .......... 260 GATCTAGTAA TGCAATTTCT TTTTTGGTGT GTTTGGTAGA GAGGAAAATG TTTTCACTTG 62257 .......... .......... .......... .......... .......... .......... 260 TTTGCTGGAG TTTGGTAAAT ACTGTCTAAA GAGCATTTAT GTATAAAAGG AGGAAAGAAA 62197 .......... .......... .......... .......... .......... .......... 260 AGATCTGAGC ATATATACTA TGACACTGGA CCCTTGTCCC AACATAGACA TGATCTAAAC 62137 .......... .......... .......... .......... .......... .......... 260 CCCACTCTGA ACTGGACAAC CAATCTCAGT CATGATCTGG GACCCGTTGT TGACTCGATA 62077 .......... .......... .......... .......... .......... .......... 260 ACTAACCCCG ACCTAATTCA AATCGAGATT GGAGGCAGGA TCCTGACCCC ATCTGGGTCA 62017 .......... .......... .......... .......... .......... .......... 260 AGGTTGCTCT TGACTTGGGA TTCCAGGTTG GGGTGGGGTC TCGGGTATGG ATCAAGAGTT 61957 .......... .......... .......... .......... .......... .......... 260 GGGGTTGGAT CCTGAGTGGG GTCAAGTGTT TGGTCTTAGG TTGAGGTCTT AAGTCTTTTT 61897 .......... .......... .......... .......... .......... .......... 260 CGGGGTTGGG AGTCAAGTCT TGGGTTGAGG TCTTGAGTAT AGGGAGTCGT GTCCTTGGTT 61837 .......... .......... .......... .......... .......... .......... 260 GGGAGTTAGG TCTAGGTTGG AGACCGTTCT GAAAAATATT TTTCTAACTT TGTATAATTA 61777 .......... .......... .......... .......... .......... .......... 260 GTCATTTTCC TATAATAGAA GGAAAGTGAA TTCGTTTGGA AAACATTGAC AAATTAAATT 61717 .......... .......... .......... .......... .......... .......... 260 TTACACGCCC TTAACTTTCT TGTTATAGTC TGTTGCGTTT CCTTGTTGAG CTGCTCTGGG 61657 .......... .......... .......... .......... .......... .......... 260 ATTTGGATAG CACATCTAAA ATCTATTGAT GAGTATATCA ATTAAAATGG TTTCACTAAT 61597 .......... .......... .......... .......... .......... .......... 260 AAGTGATGAG AGAAGCATTC TTTTCTATAG ATCAATTTCA TTTGATTCTG TTTAAGGTTT 61537 .......... .......... .......... .......... .......... .......... 260 ATAAAGAAAC TGTGATTGAC ATCATTAAAG TGTTAAAATG GAAACATTTC TTAGTGAAAA 61477 .......... .......... .......... .......... .......... .......... 260 GTGCACCTTA GACTTATTTT TGTTATAATC ATATTGATTA TCCTCTTCTT ATTTTTTTAT 61417 .......... .......... .......... .......... .......... .......... 260 TGAGTTTCTT GAAGCCGGAC TGTCATATTT ATTATCACTC TCTTCCACAT TCTAATTCCA 61357 .......... .......... .......... .......... .......... .......... 260 AAACTAAAAA TCAGACTTTT TTTCTGATAT GTAAGAGTTA CATGGCTGCT ACTAATATTT 61297 .......... .......... .......... .......... .......... .......... 260 TTGGTAGACT GGTAAAAATA TGCACCTACT CTGCATTCTG CATATTAGAT ATCCCGATCT 61237 .......... .......... .......... .......... .......... .......... 260 CCATGTCCTT TCTTTCGATT CTTTGCTTAT CATGATTTAG TATTCAGAGA CCTGTGGTGA 61177 .......... .......... .......... .......... .......... .......... 260 GGTACTGTTG TGGAGTTCCG ACCAATGGAA GTAATCCCAT TAATTTAAGA AACTGAAAAG 61117 .......... .......... .......... .......... .......... .......... 260 ACATGCTATT TTCTGATATG GTCACCCGAA ACATTGCAGC CATTCTAGAA AATTAGCTCT 61057 .......... .......... .......... .......... .......... .......... 260 ATGCTATATA TATTCTTGCT TTTAGACGGG CGCAAATTTA GCTGATTTGA AATGTAGCAT 60997 .......... .......... .......... .......... .......... .......... 260 GCAAGTTAAG TGAAGCTTCT CTATCAAAAG ACTCAGAAAG TTGAGAGGTT CCAATGTTTG 60937 .......... .......... .......... .......... .......... .......... 260 GACATGTGGA ATACATTTTT GGGGTTTACT TTTCATTGAT ATCGAGAGGT TCCAATGTAT 60877 .......... .......... .......... .......... .......... .......... 260 GGAAAAGAAA AGAAAGAGTC CAGTGACCTT AATGGTTTTG AAGTAAATGT TATCTGGTCC 60817 .......... .......... .......... .......... .......... .......... 260 TTATTCTGCT TGAAACATGC TTTCTCCAGT AAACCATGTT CAGGGTACAA ACTGAAGGAG 60757 | |||||||||| |||||||||| |||||||||| .......... .......... .........T AAACCATGTT CAGGGTACAA ACTGAAGGAG 291 ATGAATGGCA GCAAAATCTT TTCTGCTGAT GGTGAAGATG ATGCATCTGA ATCAGGAGCT 60697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAATGGCA GCAAAATCTT TTCTGCTGAT GGTGAAGATG ATGCATCTGA ATCAGGAGCT 351 GTTAATGGTA ACTTCAACAA CAGGACATCT GTCCGCATTG TTCAGGTACT ATTTAAATCA 60637 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GTTAATGGTA ACTTCAACAA CAGGACATCT GTCCGCATTG TTCAG..... .......... 396 TTATACGGTA AAATTATGTT TTACAGGACT TGCTGTGTGA GCATGCTACA AAGTCAGGAA 60577 .......... .......... .......... .......... .......... .......... 396 ACTAGTAACT GGCAACTTCA CCGTCTAATG ATTTGTAATT CATTGCAGCA AGCTGCAAAT 60517 || |||||||||| .......... .......... .......... .......... ........CA AGCTGCAAAT 408 GGAATAAGCC AGATATCATT CAGTACTGAA GAAAGGATCT CTCCAAAGAA ACCTATCACA 60457 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATAAGCC AGATATCATT CAGTACTGAA GAAAGGATCT CTCCAAAGAA ACCTATCACA 468 CTTACAGAAG TGGCAAAACA GAGAGAGTTG AGCGGAACAC TAGAAAGTGA TTCAGATAGC 60397 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTACAGAAG TGGCAAAACA GAGAGAGTTG AGCGGAACAC TAGAAAGTGA TTCAGATAGC 528 AATATGAAGA AGCAGCTTTC AGATGCAAAG AGCAAGGAAC TCAGTGGAAA TGACATATTT 60337 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATGAAGA AGCAGCTTTC AGATGCAAAG AGCAAGGAAC TCAGTGGAAA TGACATATTT 588 G 60336 | G 589 hqPGS_C04HBa0077O05.1-_SGN-E304630+ (62856 62671,62595 62522,60787 60652,60528 60336) ******************************************************************************** EST sequence 186 +strand 289 n (File: SGN-E338305+) 1 GCAGCAAAAT CTTTTCTGCT GATGGTGAAG ATGATGCATC TGAATCAGGA GCTGTTAATG 61 GTAACTTCAA CAACAGGACA TCTGTCCGCA TTGTTCAGCA AGCTGCAAAT GGAATAAGCC 121 AGATATCATT CAGTACTGAA GAAAGGATCT CTCCAAAGAA ACCTATCACA CTTACAGAAG 181 TGGCAAAACA GAGAGAGTTG AGCGGAACAC TAGAAAGTGA TTCAGATAGC AATATGAAGA 241 AGCAGCTTTC AGATGCAAAG AGCAAGGAAC TCAGTGGAAA TGACATATT Predicted gene structure (within gDNA segment 61349 to 59728): Exon 1 60749 60652 ( 98 n); cDNA 1 98 ( 98 n); score: 1.000 Intron 1 60651 60529 ( 123 n); Pd: 0.999 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 2 60528 60338 ( 191 n); cDNA 99 289 ( 191 n); score: 1.000 MATCH C04HBa0077O05.1- SGN-E338305+ 1.000 289 1.000 C PGS_C04HBa0077O05.1-_SGN-E338305+ (60749 60652,60528 60338) Alignment (genomic DNA sequence = upper lines): GCAGCAAAAT CTTTTCTGCT GATGGTGAAG ATGATGCATC TGAATCAGGA GCTGTTAATG 60690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCAAAAT CTTTTCTGCT GATGGTGAAG ATGATGCATC TGAATCAGGA GCTGTTAATG 60 GTAACTTCAA CAACAGGACA TCTGTCCGCA TTGTTCAGGT ACTATTTAAA TCATTATACG 60630 |||||||||| |||||||||| |||||||||| |||||||| GTAACTTCAA CAACAGGACA TCTGTCCGCA TTGTTCAG.. .......... .......... 98 GTAAAATTAT GTTTTACAGG ACTTGCTGTG TGAGCATGCT ACAAAGTCAG GAAACTAGTA 60570 .......... .......... .......... .......... .......... .......... 98 ACTGGCAACT TCACCGTCTA ATGATTTGTA ATTCATTGCA GCAAGCTGCA AATGGAATAA 60510 ||||||||| |||||||||| .......... .......... .......... .......... .CAAGCTGCA AATGGAATAA 117 GCCAGATATC ATTCAGTACT GAAGAAAGGA TCTCTCCAAA GAAACCTATC ACACTTACAG 60450 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAGATATC ATTCAGTACT GAAGAAAGGA TCTCTCCAAA GAAACCTATC ACACTTACAG 177 AAGTGGCAAA ACAGAGAGAG TTGAGCGGAA CACTAGAAAG TGATTCAGAT AGCAATATGA 60390 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTGGCAAA ACAGAGAGAG TTGAGCGGAA CACTAGAAAG TGATTCAGAT AGCAATATGA 237 AGAAGCAGCT TTCAGATGCA AAGAGCAAGG AACTCAGTGG AAATGACATA TT 60338 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || AGAAGCAGCT TTCAGATGCA AAGAGCAAGG AACTCAGTGG AAATGACATA TT 289 hqPGS_C04HBa0077O05.1-_SGN-E338305+ (60749 60652,60528 60338) ******************************************************************************** EST sequence 216 +strand 459 n (File: SGN-E540879+) 1 TCCTGCTGGT GGTCAAAGCA ATATTTTGTT TGGTGATGAA CCTGTTGTCA ACACAGTAAA 61 GAAAATACAT AACCAGAAGT TTGCAGAGTT GACCGGCAAT GACATTTTCA AGGGAGATAT 121 TCCTCCTGGA TCTGCAGAAA AGCCACTGAG CAGAGCAAAG CTGAGAGAAA TGAGTGGAAA 181 TGATATTTTT TCTGATGGAA AAGTTGAATC CAGAGATTAT TTTGGTGGCG TTCGTAAACC 241 ACCAGGCGGA GAAAGCAGCA TCGCGCTGGT TTAGATAAAT GTCATCAGAC TGCTGCTATG 301 TTTGACCTGT AGTGTTCCTG CAACATTTCA CTTCTAATGT TTCATGGGTT TTAGAATTGA 361 GGGTTGTAGA TGATATGTGT TTAACCATGT TGTACGGACA ACTTCTAAAC TATAATTTAC 421 ATAAACTTGG AGGATTTGCC TAANAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 60736 to 58915): Exon 1 60126 59671 ( 456 n); cDNA 2 457 ( 456 n); score: 0.978 MATCH C04HBa0077O05.1- SGN-E540879+ 0.978 456 0.993 C PGS_C04HBa0077O05.1-_SGN-E540879+ (60126 59671) Alignment (genomic DNA sequence = upper lines): CCTGCTGGTG GTCAAAGCAA TATTTTGTTT GGTGATGAAC CTGTTGTCAA CACAGTAAAG 60067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGCTGGTG GTCAAAGCAA TATTTTGTTT GGTGATGAAC CTGTTGTCAA CACAGTAAAG 61 AAAATACATA ACCAGAAGTT TGCAGAGTTG ACCGGCAATG ACATTTTCAA GGGAGATATT 60007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATACATA ACCAGAAGTT TGCAGAGTTG ACCGGCAATG ACATTTTCAA GGGAGATATT 121 CCTCCTGGAT CTGCAGAAAA GCCACTGAGC AGAGCAAAGC TGAGAGAAAT GAGTGGAAAT 59947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCCTGGAT CTGCAGAAAA GCCACTGAGC AGAGCAAAGC TGAGAGAAAT GAGTGGAAAT 181 GATATTTTTT CTGATGGAAA AGTTGAATCC AGAGATTATT TTGGTGGCGT TCGTAAACCA 59887 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATTTTTT CTGATGGAAA AGTTGAATCC AGAGATTATT TTGGTGGCGT TCGTAAACCA 241 CCAGGCGGAG AAAGCAGCAT CGCGCTGGTT TAGATAAATG TCATCAGACT GCTGCTATGT 59827 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGGCGGAG AAAGCAGCAT CGCGCTGGTT TAGATAAATG TCATCAGACT GCTGCTATGT 301 TTGACCTGTA GTGTTCCTGC AACATTTCAC TTCTAATGTT TCATGGGTTT TAGAATTGAG 59767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACCTGTA GTGTTCCTGC AACATTTCAC TTCTAATGTT TCATGGGTTT TAGAATTGAG 361 GGTTGTAGAT GATATGTGTT TAACCATGTT GTACGGACAA CTTCTAAACT ATAATTTACA 59707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTGTAGAT GATATGTGTT TAACCATGTT GTACGGACAA CTTCTAAACT ATAATTTACA 421 TAAACTTGGA GGATTTGCCT AACATAGTGT TTTTAA 59671 |||||||||| |||||||||| || | | || TAAACTTGGA GGATTTGCCT AANAAAAAAA AAAAAA 457 hqPGS_C04HBa0077O05.1-_SGN-E540879+ (60126 59671) ******************************************************************************** EST sequence 49 -strand 463 n (File: SGN-E548457-) 1 TCCTGCTGGT GGTCAAAGCA ATATTTTGTT TGGTGATGAA CCTGTTGTCA ACACAGTAAA 61 GAAAATACAT AACCAGAAGT TTGCAGAGTT GACCGGCAAT GACATTTTCA AGGGAGATAT 121 TCCTCCTGGA TCTGCAGAAA AGCCACTGAG CAGAGCAAAG CTGAGAGAAA TGAGTGGAAA 181 TGATATTTTT TCTGATGGAA AAGTTGAATC CAGAGATTAT TTTGGTGGCG TTCGTAAACC 241 ACCAGGCGGA GAAAGCAGCA TCGCGCTGGT TTAGATAAAT GTCATCAGAC TGCTGCTATG 301 TTTGACCTGT AGTGTTCCTG CAACATTTCA CTTCTAATGT TTCATGGGTT TTAGAATTGA 361 GGGTTGTAGA TGATATGTGT TTAACCATGT TGTACGGACA ACTTCTAAAC TATAATTTAC 421 ATAAACTTGG AGGATTTGCC TAAAAAAAAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 60746 to 58885): Exon 1 60126 59685 ( 442 n); cDNA 2 443 ( 442 n); score: 1.000 PPA cDNA 444 463 MATCH C04HBa0077O05.1- SGN-E548457- 1.000 442 0.955 C PGS_C04HBa0077O05.1-_SGN-E548457- (60126 59685) Alignment (genomic DNA sequence = upper lines): CCTGCTGGTG GTCAAAGCAA TATTTTGTTT GGTGATGAAC CTGTTGTCAA CACAGTAAAG 60067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGCTGGTG GTCAAAGCAA TATTTTGTTT GGTGATGAAC CTGTTGTCAA CACAGTAAAG 61 AAAATACATA ACCAGAAGTT TGCAGAGTTG ACCGGCAATG ACATTTTCAA GGGAGATATT 60007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATACATA ACCAGAAGTT TGCAGAGTTG ACCGGCAATG ACATTTTCAA GGGAGATATT 121 CCTCCTGGAT CTGCAGAAAA GCCACTGAGC AGAGCAAAGC TGAGAGAAAT GAGTGGAAAT 59947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCCTGGAT CTGCAGAAAA GCCACTGAGC AGAGCAAAGC TGAGAGAAAT GAGTGGAAAT 181 GATATTTTTT CTGATGGAAA AGTTGAATCC AGAGATTATT TTGGTGGCGT TCGTAAACCA 59887 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATTTTTT CTGATGGAAA AGTTGAATCC AGAGATTATT TTGGTGGCGT TCGTAAACCA 241 CCAGGCGGAG AAAGCAGCAT CGCGCTGGTT TAGATAAATG TCATCAGACT GCTGCTATGT 59827 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGGCGGAG AAAGCAGCAT CGCGCTGGTT TAGATAAATG TCATCAGACT GCTGCTATGT 301 TTGACCTGTA GTGTTCCTGC AACATTTCAC TTCTAATGTT TCATGGGTTT TAGAATTGAG 59767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACCTGTA GTGTTCCTGC AACATTTCAC TTCTAATGTT TCATGGGTTT TAGAATTGAG 361 GGTTGTAGAT GATATGTGTT TAACCATGTT GTACGGACAA CTTCTAAACT ATAATTTACA 59707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTGTAGAT GATATGTGTT TAACCATGTT GTACGGACAA CTTCTAAACT ATAATTTACA 421 TAAACTTGGA GGATTTGCCT AA 59685 |||||||||| |||||||||| || TAAACTTGGA GGATTTGCCT AA 443 hqPGS_C04HBa0077O05.1-_SGN-E548457- (60126 59685) ******************************************************************************** EST sequence 291 +strand 449 n (File: SGN-E290651+) 1 CCTGCTGGTG GTCAAAGCAA TATTTTGTTT GGTGATGAAC CTGTTGTCAA CACAGTAAAG 61 AAAATACATA ACCAGAAGTT TGCAGAGTTG ACCGGCAATG ACATTTTCAA GGGAGATATT 121 CCTCCTGGAT CTGCAGAAAA GCCACTGAGC AGAGCAAAGC TGAGAGAAAT GAGTGGAAAT 181 GATATTTTTT CTGATGGAAA AGTTGAATCC AGAGATTATT TTGGTGGCGT TCGTAAACCA 241 CCAGGCGGAG AAAGCAGCAT CGCGCTGGTT TAGATAAATG TCATCAGACT GCTGCTATGT 301 TTGACCTGTA GTGTTCCTGC AACATTTCAC TTCTAATGTT TCATGGGTTT TAGAATTGAG 361 GGTTGTAGAT GATATGTGTT TAACCATGTT GTACGGACAA CTTCTAAACT ATAATTTACA 421 TAAACTTGGA GGATTTGCCT CAGAAAAAA Predicted gene structure (within gDNA segment 60726 to 58987): Exon 1 60126 59687 ( 440 n); cDNA 1 440 ( 440 n); score: 1.000 MATCH C04HBa0077O05.1- SGN-E290651+ 1.000 440 0.980 C PGS_C04HBa0077O05.1-_SGN-E290651+ (60126 59687) Alignment (genomic DNA sequence = upper lines): CCTGCTGGTG GTCAAAGCAA TATTTTGTTT GGTGATGAAC CTGTTGTCAA CACAGTAAAG 60067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGCTGGTG GTCAAAGCAA TATTTTGTTT GGTGATGAAC CTGTTGTCAA CACAGTAAAG 60 AAAATACATA ACCAGAAGTT TGCAGAGTTG ACCGGCAATG ACATTTTCAA GGGAGATATT 60007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATACATA ACCAGAAGTT TGCAGAGTTG ACCGGCAATG ACATTTTCAA GGGAGATATT 120 CCTCCTGGAT CTGCAGAAAA GCCACTGAGC AGAGCAAAGC TGAGAGAAAT GAGTGGAAAT 59947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCCTGGAT CTGCAGAAAA GCCACTGAGC AGAGCAAAGC TGAGAGAAAT GAGTGGAAAT 180 GATATTTTTT CTGATGGAAA AGTTGAATCC AGAGATTATT TTGGTGGCGT TCGTAAACCA 59887 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATTTTTT CTGATGGAAA AGTTGAATCC AGAGATTATT TTGGTGGCGT TCGTAAACCA 240 CCAGGCGGAG AAAGCAGCAT CGCGCTGGTT TAGATAAATG TCATCAGACT GCTGCTATGT 59827 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGGCGGAG AAAGCAGCAT CGCGCTGGTT TAGATAAATG TCATCAGACT GCTGCTATGT 300 TTGACCTGTA GTGTTCCTGC AACATTTCAC TTCTAATGTT TCATGGGTTT TAGAATTGAG 59767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACCTGTA GTGTTCCTGC AACATTTCAC TTCTAATGTT TCATGGGTTT TAGAATTGAG 360 GGTTGTAGAT GATATGTGTT TAACCATGTT GTACGGACAA CTTCTAAACT ATAATTTACA 59707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTGTAGAT GATATGTGTT TAACCATGTT GTACGGACAA CTTCTAAACT ATAATTTACA 420 TAAACTTGGA GGATTTGCCT 59687 |||||||||| |||||||||| TAAACTTGGA GGATTTGCCT 440 hqPGS_C04HBa0077O05.1-_SGN-E290651+ (60126 59687) ******************************************************************************** EST sequence 112 -strand 808 n (File: SGN-E549022-) 1 TTAACAAAAC CAGAAGAAAT CAATGACTCT TAAGTGGTCT ATTTTCTCCC GAGTCTGATG 61 GTCTCTAAGA TTGATGTTTA TTGCTTAATT GTTTCAAGTT TTTCTTAACT TGGGCCTCTA 121 CTCTATTATT TGCTCTTATT ACCCTTGCTG TATTTTGCAG CCTGCTGGTG GTCAAAGCAA 181 TATCTTGTTT GGGGATGAAC CTGTTGTCAA GACAACAAAG AAAATACATA ACCAGAAGTT 241 TGCAGAATTG ACAGGCAATG ACATTTTCAA GGGAGATACT CCTCCTGGAT CGGCGGAGAA 301 GACACTGAGC AGTGCTAAGC TGAAAGAAAT GAGTGGTAAT GATATATTCT CTGATGGAAA 361 AATTGAATCT AGGGATCACT TTGGCGGTGT GCGCAAACCA CCTGGTGGAG AAAGCACTAT 421 CAGATTAGTG TAATGTCATC AAATGGCTCT TATGTTGACC GGCAGTGCCA CATTGCAGTT 481 GCTTTCTGAC TAGTTAGAAC GTCTGGCAGT TAGGATTGAG GATTGTAAAA TTTGATGTGT 541 CAATACTCTT AATTTGTGAC AAAATGCAGT GTGTTTCTCT GCTTAACTGT TGTAGGAGTT 601 TATAGGTTAG CAATAACCCA TTCTATTTGC CGATGGTTTG ATCAGTTGAT CTATGATGGG 661 TCCTATCTGA TATTGAATTA GTACGATCAG TCTGTCAGTA CAGGGAAAGA ACCACGGCCC 721 ACCCAAGTGG CACTGGACCA TTATGTTAAA ATACAGAAAT CTAAATTGGA AAAGTGAAGA 781 GATAGCTTTC AGCTAAAAAA AAAAGAAA Predicted gene structure (within gDNA segment 62918 to 53509): Exon 1 60160 59821 ( 340 n); cDNA 126 460 ( 335 n); score: 0.819 PPA cDNA 795 808 MATCH C04HBa0077O05.1- SGN-E549022- 0.819 340 0.421 C PGS_C04HBa0077O05.1-_SGN-E549022- (60160 59821) Alignment (genomic DNA sequence = upper lines): TTATGTGTTC TCATGTGGC- TGTCCTACTT TGTAGCCTGC TGGTGGTCAA AGCAATATTT 60102 |||| || || | || | || || || || ||||||| |||||||||| |||||||| | TTATTTGCTC TTATTACCCT TGCTGTATTT TGCAGCCTGC TGGTGGTCAA AGCAATATCT 185 TGTTTGGTGA TGAACCTGTT GTCAACACAG TAAAGAAAAT ACATAACCAG AAGTTTGCAG 60042 ||||||| || |||||||||| ||||| ||| ||||||||| |||||||||| |||||||||| TGTTTGGGGA TGAACCTGTT GTCAAGACAA CAAAGAAAAT ACATAACCAG AAGTTTGCAG 245 AGTTGACCGG CAATGACATT TTCAAGGGAG ATATTCCTCC TGGATCTGCA GAAAAGCCAC 59982 | ||||| || |||||||||| |||||||||| ||| |||||| |||||| || || ||| ||| AATTGACAGG CAATGACATT TTCAAGGGAG ATACTCCTCC TGGATCGGCG GAGAAGACAC 305 TGAGCAGAGC AAAGCTGAGA GAAATGAGTG GAAATGATAT TTTTTCTGAT GGAAAAGTTG 59922 ||||||| || ||||||| | |||||||||| | |||||||| || |||||| |||||| ||| TGAGCAGTGC TAAGCTGAAA GAAATGAGTG GTAATGATAT ATTCTCTGAT GGAAAAATTG 365 AATCCAGAGA TTATTTTGGT GGCGTTCGTA AACCACCAGG CGGAGAAAGC AGCATCGCGC 59862 |||| || || | | ||||| || || || | ||||||| || ||||||||| | | | | AATCTAGGGA TCACTTTGGC GGTGTGCGCA AACCACCTGG TGGAGAAAGC A-C-T--ATC 421 TGGTTTAGAT AAATGTCATC AGACTGCTGC TATGTTTGAC C 59821 | |||| ||||||||| | | ||| |||| ||||| | -AGATTAGTG TAATGTCATC AAATGGCTCT TATG-TTGAC C 460 hqPGS_C04HBa0077O05.1-_SGN-E549022- (60160 59821) ******************************************************************************** EST sequence 78 -strand 452 n (File: SGN-E228553-) 1 AGAAAATACA TAACCAGAAG TTTGCAGAAT TGACAGGCAA TGACATTTTC AAGGGAGATA 61 CTCCTCCTGG ATCGGCGGAG AAGACACTGA GCAGTGCTAA GCTGAAAGAA ATGAGTGGTA 121 ATGATATATT CTCTGATGGA AAAATTGAAT CTAGGGATCA CTTTTGGCGG TGTGCGCAAA 181 CCACCCTGGT GGAGAAAGCA CTATCAGATT AGTGTAATGT CATCAAATGG CTCTTATGTT 241 GACCGGCAGT GCCACATTGC AGTTGCTTTC TGACTAGTTA GAACGTCTGG CAGTTAGGAT 301 TGAGGATTGT AAAATTTGAT GTGTCAATAC TCTTAATTTG TGACAAAATG CAGTGTGTTT 361 CTCTGCTTAA CTGTTGTAGG AGTTTATAGG TTAGCAATAA CCCATTCTAT TTGCCGATGG 421 TTTGATCAGT TGAAAAAAAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 60678 to 55489): Exon 1 60068 59821 ( 248 n); cDNA 1 244 ( 244 n); score: 0.815 PPA cDNA 433 452 MATCH C04HBa0077O05.1- SGN-E228553- 0.815 248 0.549 C PGS_C04HBa0077O05.1-_SGN-E228553- (60068 59821) Alignment (genomic DNA sequence = upper lines): AGAAAATACA TAACCAGAAG TTTGCAGAGT TGACCGGCAA TGACATTTTC AAGGGAGATA 60009 |||||||||| |||||||||| |||||||| | |||| ||||| |||||||||| |||||||||| AGAAAATACA TAACCAGAAG TTTGCAGAAT TGACAGGCAA TGACATTTTC AAGGGAGATA 60 TTCCTCCTGG ATCTGCAGAA AAGCCACTGA GCAGAGCAAA GCTGAGAGAA ATGAGTGGAA 59949 ||||||||| ||| || || ||| |||||| |||| || || ||||| |||| |||||||| | CTCCTCCTGG ATCGGCGGAG AAGACACTGA GCAGTGCTAA GCTGAAAGAA ATGAGTGGTA 120 ATGATATTTT TTCTGATGGA AAAGTTGAAT CCAGAGATTA -TTTTGGTGG CGTTCGTAAA 59890 ||||||| || ||||||||| ||| |||||| | || ||| | |||||| || || || ||| ATGATATATT CTCTGATGGA AAAATTGAAT CTAGGGATCA CTTTTGGCGG TGTGCGCAAA 180 CCA-CCAGGC GGAGAAAGCA GCATCGCGCT GGTTTAGATA AATGTCATCA GACTGCTGCT 59831 ||| || || |||||||||| | | | | |||| |||||||||| | ||| | CCACCCTGGT GGAGAAAGCA -C-T--ATC- AGATTAGTGT AATGTCATCA AATGGCTCTT 235 ATGTTTGACC 59821 ||| |||||| ATG-TTGACC 244 hqPGS_C04HBa0077O05.1-_SGN-E228553- (60068 59821) ******************************************************************************** EST sequence 282 +strand 481 n (File: SGN-E208613+) 1 AAGAATGATC CTAATTGTCC TTGTATTTTT ATGAAAAGGT CTTGGTAAGA CAAAATTTTG 61 TCTTGACCTA CAGATTGTTA ATTTGACAAA TAAAATATTT GTCTAACAGT GCACATACAC 121 TGAAAAATTT TGATGCAATT TTATGTGGAT ATATCGCATT CATTGAGTAC CCCAATGATT 181 ATGAGATCAC TTGTCATAAA TGATGATTCA GTTTGATCTC AAAAGAAGGA TGATGAGTTT 241 CTTGGTGATG AAACTCTATC TTGGTGCAAT CAGGGCACTA GTGCATCTTG CTAACAATAC 301 TCGACCAGAT ATCTGTTTTG CAGTAAGTCT ACTGGCAAGA TTCAGTTCCT CCCCAACAAA 361 AAGACATTGG AATGGCGTTA AACACATACT TCGATATCTT CGAGGGACCA TGGACATGGG 421 TTTATTCTAT TCCAATGAAT CCAAATCAGA ACTGATTGGT TACGCAGATG CAGGGTATTT 481 A Predicted gene structure (within gDNA segment 65179 to 61761): Exon 1 64579 64099 ( 481 n); cDNA 1 481 ( 481 n); score: 0.921 MATCH C04HBa0077O05.1- SGN-E208613+ 0.921 481 1.000 C PGS_C04HBa0077O05.1-_SGN-E208613+ (64579 64099) Alignment (genomic DNA sequence = upper lines): AAGAATGATC CTAATTGTCC TTGTATTTTT ATGAAAAGGT CTTGGTAAGA CAAAATTTTG 64520 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATGATC CTAATTGTCC TTGTATTTTT ATGAAAAGGT CTTGGTAAGA CAAAATTTTG 60 TCTTGACCTA CAGATTGTTA ATTTGACAAA TAATATATTT GTCTAACAGT GCACATACAC 64460 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| TCTTGACCTA CAGATTGTTA ATTTGACAAA TAAAATATTT GTCTAACAGT GCACATACAC 120 TGAAAATTTT TGATGCAATT TTATGTGGAT ATATCGCATT CATTGAGTAC CCCAATGATT 64400 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAATTT TGATGCAATT TTATGTGGAT ATATCGCATT CATTGAGTAC CCCAATGATT 180 ATGAGATCAC TTGGCATAAA TGATGATTCA GTTTGATCTC AAAAGAAGGA TGAAGAGTTT 64340 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||||| ATGAGATCAC TTGTCATAAA TGATGATTCA GTTTGATCTC AAAAGAAGGA TGATGAGTTT 240 CTTGGTGATG AAACTCTATC TTGGTGCAAT CAGGGCACTA GTGCATCTTA CTAACAATAT 64280 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||||||| CTTGGTGATG AAACTCTATC TTGGTGCAAT CAGGGCACTA GTGCATCTTG CTAACAATAC 300 TTGACCAGAT ATTTGTTTTG CAGTAAATTT ACTGGCAAGA TTCAGTTTCT CCCCGATAAA 64220 | |||||||| || ||||||| |||||| | | |||||||||| ||||||| || |||| | ||| TCGACCAGAT ATCTGTTTTG CAGTAAGTCT ACTGGCAAGA TTCAGTTCCT CCCCAACAAA 360 AGGACATTGA AATGGTGTTG AGCACATGAT TGAATATCCT CGAAGGACCA TAGTTATGTG 64160 | ||||||| ||||| ||| | ||||| | | ||||| | ||| |||||| | | ||| | AAGACATTGG AATGGCGTTA AACACATACT TCGATATCTT CGAGGGACCA TGGACATGGG 420 TTTATTCTAT CCCGAGGAAT CCAAGACAAA ATTGATTGAT TACGCAGATG CAGAATATTT 64100 |||||||||| || | |||| |||| || | | |||||| | |||||||||| ||| ||||| TTTATTCTAT TCCAATGAAT CCAAATCAGA ACTGATTGGT TACGCAGATG CAGGGTATTT 480 A 64099 | A 481 hqPGS_C04HBa0077O05.1-_SGN-E208613+ (64579 64099) ******************************************************************************** EST sequence 274 +strand 409 n (File: SGN-E289962+) 1 TTGAAAGAAA CTTATCCAAT AAAGCTTCAA GAATTCTTAT ATGGATTGAA ATAGTCAAGG 61 AAGAAAAATG GTACAAAAGA ATGACCCTAA TTGTCCTTGT ATTTTTATGA AAAGGTCTTG 121 GTAAGACAAA ATTTTGCCTT GACCTACAGA TTGATAATTT GACAAATGAA ATATTTGTCT 181 AACAGTGCAC ATACACTGAA AAATTTTGAT GCAATTTTAT ATGAATAAAT CGCATTCATT 241 GAGTACCCCA ATGATTATGA GATTACTTGA CATAAATGAT GATTCAGTTT GATCTCAAAA 301 GAAGGATGAT GAGTTTCTTG GTGATGAAAC TCTATCTTGG TGCAATCAGG GCACTAGTGC 361 ATCTTACTAA CAATATTATT CCAGATATTT GTTTTGCAGT AAATTTACT Predicted gene structure (within gDNA segment 65381 to 63637): Exon 1 64655 64247 ( 409 n); cDNA 1 409 ( 409 n); score: 0.956 MATCH C04HBa0077O05.1- SGN-E289962+ 0.956 409 1.000 C PGS_C04HBa0077O05.1-_SGN-E289962+ (64655 64247) Alignment (genomic DNA sequence = upper lines): TTGAAAGAAA CTTTTCCAAT AAAGCTTCAA GAATCCTTAT ATGGATTGAA ATAGTCAAGG 64596 |||||||||| ||| |||||| |||||||||| |||| ||||| |||||||||| |||||||||| TTGAAAGAAA CTTATCCAAT AAAGCTTCAA GAATTCTTAT ATGGATTGAA ATAGTCAAGG 60 AAGAAAAAGG GTACAAAAGA ATGATCCTAA TTGTCCTTGT ATTTTTATGA AAAGGTCTTG 64536 |||||||| | |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| AAGAAAAATG GTACAAAAGA ATGACCCTAA TTGTCCTTGT ATTTTTATGA AAAGGTCTTG 120 GTAAGACAAA ATTTTGTCTT GACCTACAGA TTGTTAATTT GACAAATAAT ATATTTGTCT 64476 |||||||||| |||||| ||| |||||||||| ||| |||||| ||||||| | |||||||||| GTAAGACAAA ATTTTGCCTT GACCTACAGA TTGATAATTT GACAAATGAA ATATTTGTCT 180 AACAGTGCAC ATACACTGAA AATTTTTGAT GCAATTTTAT GTGGATATAT CGCATTCATT 64416 |||||||||| |||||||||| || ||||||| |||||||||| || ||| || |||||||||| AACAGTGCAC ATACACTGAA AAATTTTGAT GCAATTTTAT ATGAATAAAT CGCATTCATT 240 GAGTACCCCA ATGATTATGA GATCACTTGG CATAAATGAT GATTCAGTTT GATCTCAAAA 64356 |||||||||| |||||||||| ||| ||||| |||||||||| |||||||||| |||||||||| GAGTACCCCA ATGATTATGA GATTACTTGA CATAAATGAT GATTCAGTTT GATCTCAAAA 300 GAAGGATGAA GAGTTTCTTG GTGATGAAAC TCTATCTTGG TGCAATCAGG GCACTAGTGC 64296 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGATGAT GAGTTTCTTG GTGATGAAAC TCTATCTTGG TGCAATCAGG GCACTAGTGC 360 ATCTTACTAA CAATATTTGA CCAGATATTT GTTTTGCAGT AAATTTACT 64247 |||||||||| ||||||| |||||||||| |||||||||| ||||||||| ATCTTACTAA CAATATTATT CCAGATATTT GTTTTGCAGT AAATTTACT 409 hqPGS_C04HBa0077O05.1-_SGN-E289962+ (64655 64247) ******************************************************************************** EST sequence 229 +strand 677 n (File: SGN-E391540+) 1 ACGAGGATCT TGAATTCAAA TCTGTCATAT AGTGTGGACA GATTAATGGT TGACCAAGTA 61 AAATGCACAA TTCAAGTATA TTTTGTTTCA CTTAGAAAAG TGACATTTTG GACTGGTAGT 121 CCATAAATCA AGGTATAATG TCAGTGGGGT ACAAATAAAT TATTATGCAA TAATATAACC 181 GTAAGATATC AAATACGGTT TGTGTCTTGG GGCATAAAGG TTTATCGCAA AAATCCTGAC 241 ATTATTGGAG ATGTTTTCTC CTTTGGTGGA TGCAATGAGG TTTGTTTTGA TCTGGCAACA 301 TATGAAAAGC TTGAATGCAT GTAATGAATA ATTGTAATGT CTAGCTAGAC AATGAAGGTT 361 ATATGAAAAT CCTTGAAACA ATCGAGGTGT CTGAAGCATA CAAGAGTTTG AAAGAAACTT 421 TTTCAATAAA GCTTCAAGAA TCCTTATATG GATTGAAATA GTCAAGGAAG AAAAGGGTAC 481 AAAAGAATGA TCCTAATTGT CCTTGTATTT TTATGAAAAG GTCTTGGTAA GACAAAATTT 541 TGTCTTGACC TACAGATTGT TAATTTGACA AATAAAATAT TTGTCTAACA GTGCACATAC 601 ACTGAAAAAT TTTGATGCAA TTTTATGTGG ATATATCGCA TTCATTGAGT ACCCCAATGA 661 TTATGAGATC ACTTGTC Predicted gene structure (within gDNA segment 65716 to 63757): Exon 1 65056 64387 ( 670 n); cDNA 7 675 ( 669 n); score: 0.969 MATCH C04HBa0077O05.1- SGN-E391540+ 0.969 670 0.990 C PGS_C04HBa0077O05.1-_SGN-E391540+ (65056 64387) Alignment (genomic DNA sequence = upper lines): ATCTTGAATT CAAATCTGTC ATATAGTGTG AACAGATAAA TGGTTGGCCA AGTAAAATGC 64997 |||||||||| |||||||||| |||||||||| |||||| || |||||| ||| |||||||||| ATCTTGAATT CAAATCTGTC ATATAGTGTG GACAGATTAA TGGTTGACCA AGTAAAATGC 66 ACAATTCAAG TATATTTTGT TTCACTTAGA AAAGTGACAT TTTGGACTGG TAGTCCATAA 64937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATTCAAG TATATTTTGT TTCACTTAGA AAAGTGACAT TTTGGACTGG TAGTCCATAA 126 ATCAAGGTAT AATGTCAGTG GGGTACAAAT AAATTATTAT GCGATAGTAT AACTGTAAGA 64877 |||||||||| |||||||||| |||||||||| |||||||||| || ||| ||| ||| |||||| ATCAAGGTAT AATGTCAGTG GGGTACAAAT AAATTATTAT GCAATAATAT AACCGTAAGA 186 TATCAAATAC GATTTGTGCC TTGGGGCATA AAGGTTTATC GCAAAAATCC TGACATTAGT 64817 |||||||||| | |||||| | |||||||||| |||||||||| |||||||||| |||||||| | TATCAAATAC GGTTTGTGTC TTGGGGCATA AAGGTTTATC GCAAAAATCC TGACATTATT 246 GGAGATGTTT TCTCCTTTGG TGGATGAAAT GAGGTTTGTT TTGATCTGGC AACATATGAA 64757 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| GGAGATGTTT TCTCCTTTGG TGGATGCAAT GAGGTTTGTT TTGATCTGGC AACATATGAA 306 AA-CTTGAAT GCATGTAAAT GAATAATTTT AATGTCTAGC TAGACAATGA ATGTTATATG 64698 || ||||||| |||||| ||| |||||||| | |||||||||| |||||||||| | |||||||| AAGCTTGAAT GCATGT-AAT GAATAATTGT AATGTCTAGC TAGACAATGA AGGTTATATG 365 AAAATCCTTG AAACAATCGA GGTGTCTGAA GCATATAAGA GTTTGAAAGA AACTTTTCCA 64638 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| ||||||| || AAAATCCTTG AAACAATCGA GGTGTCTGAA GCATACAAGA GTTTGAAAGA AACTTTTTCA 425 ATAAAGCTTC AAGAATCCTT ATATGGATTG AAATAGTCAA GGAAGAAAAA GGGTACAAAA 64578 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| ATAAAGCTTC AAGAATCCTT ATATGGATTG AAATAGTCAA GGAAG-AAAA GGGTACAAAA 484 GAATGATCCT AATTGTCCTT GTATTTTTAT GAAAAGGTCT TGGTAAGACA AAATTTTGTC 64518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGATCCT AATTGTCCTT GTATTTTTAT GAAAAGGTCT TGGTAAGACA AAATTTTGTC 544 TTGACCTACA GATTGTTAAT TTGACAAATA ATATATTTGT CTAACAGTGC ACATACACTG 64458 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| TTGACCTACA GATTGTTAAT TTGACAAATA AAATATTTGT CTAACAGTGC ACATACACTG 604 AAAATTTTTG ATGCAATTTT ATGTGGATAT ATCGCATTCA TTGAGTACCC CAATGATTAT 64398 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATTTTG ATGCAATTTT ATGTGGATAT ATCGCATTCA TTGAGTACCC CAATGATTAT 664 GAGATCACTT G 64387 |||||||||| | GAGATCACTT G 675 hqPGS_C04HBa0077O05.1-_SGN-E391540+ (65056 64387) ******************************************************************************** EST sequence 230 +strand 582 n (File: SGN-E267707+) 1 TTGACCAAGT AAAATGCACA ATTCAAGTAT ATTTTGTTTC ACTTAGAAAA GTGACATTTT 61 GGACTGGTAG TCCATAAATC AAGGTATAAT GTCAGTGGGG TACAAATAAA TTATTATGCA 121 ATAATATAAC CGTAAGATAT CAAATACGGT TTGTGTCTTG GGGCATAAAG GTTTATCGCA 181 AAAATCCTGA CATTATTGGA GATGTTTTCT CCTTTGGTGG ATGCAATGAG GTTTGTTTTG 241 ATCTGGCAAC ATATGAAAAG CTTGAATGCA TGTAATGAAT AATTGTAATG TCTAGCTAGA 301 CAATGAAGGT TATATGAAAA TCCTTGAAAC AATCGAGGTG TCTGAAGCAT ACAAGAGTTT 361 GAAAGAAACT TTTTCAATAA AGCTTCAAGA ATCCTTATAT GGATTGAAAT AGTCAAGGAA 421 GAAAAGGGTA CAAAAGAATG ATCCTAATTG TCCTTGTATT TTTATGAAAA GGTCTTGGTA 481 AGACAAAATT TTGTCTTGAC CTACAGATTG TTAATTTGAC AAATAAAATA TTTGTCTAAC 541 AGTGCACATA CACTGAAAAA TTTTGATGCA ATTTTATGTG GA Predicted gene structure (within gDNA segment 65649 to 63821): Exon 1 65013 64431 ( 583 n); cDNA 1 582 ( 582 n); score: 0.968 MATCH C04HBa0077O05.1- SGN-E267707+ 0.968 583 1.002 C PGS_C04HBa0077O05.1-_SGN-E267707+ (65013 64431) Alignment (genomic DNA sequence = upper lines): TTGGCCAAGT AAAATGCACA ATTCAAGTAT ATTTTGTTTC ACTTAGAAAA GTGACATTTT 64954 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACCAAGT AAAATGCACA ATTCAAGTAT ATTTTGTTTC ACTTAGAAAA GTGACATTTT 60 GGACTGGTAG TCCATAAATC AAGGTATAAT GTCAGTGGGG TACAAATAAA TTATTATGCG 64894 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GGACTGGTAG TCCATAAATC AAGGTATAAT GTCAGTGGGG TACAAATAAA TTATTATGCA 120 ATAGTATAAC TGTAAGATAT CAAATACGAT TTGTGCCTTG GGGCATAAAG GTTTATCGCA 64834 ||| |||||| ||||||||| |||||||| | ||||| |||| |||||||||| |||||||||| ATAATATAAC CGTAAGATAT CAAATACGGT TTGTGTCTTG GGGCATAAAG GTTTATCGCA 180 AAAATCCTGA CATTAGTGGA GATGTTTTCT CCTTTGGTGG ATGAAATGAG GTTTGTTTTG 64774 |||||||||| ||||| |||| |||||||||| |||||||||| ||| |||||| |||||||||| AAAATCCTGA CATTATTGGA GATGTTTTCT CCTTTGGTGG ATGCAATGAG GTTTGTTTTG 240 ATCTGGCAAC ATATGAAAA- CTTGAATGCA TGTAAATGAA TAATTTTAAT GTCTAGCTAG 64715 |||||||||| ||||||||| |||||||||| ||| |||||| ||||| |||| |||||||||| ATCTGGCAAC ATATGAAAAG CTTGAATGCA TGT-AATGAA TAATTGTAAT GTCTAGCTAG 299 ACAATGAATG TTATATGAAA ATCCTTGAAA CAATCGAGGT GTCTGAAGCA TATAAGAGTT 64655 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| ACAATGAAGG TTATATGAAA ATCCTTGAAA CAATCGAGGT GTCTGAAGCA TACAAGAGTT 359 TGAAAGAAAC TTTTCCAATA AAGCTTCAAG AATCCTTATA TGGATTGAAA TAGTCAAGGA 64595 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAGAAAC TTTTTCAATA AAGCTTCAAG AATCCTTATA TGGATTGAAA TAGTCAAGGA 419 AGAAAAAGGG TACAAAAGAA TGATCCTAAT TGTCCTTGTA TTTTTATGAA AAGGTCTTGG 64535 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AG-AAAAGGG TACAAAAGAA TGATCCTAAT TGTCCTTGTA TTTTTATGAA AAGGTCTTGG 478 TAAGACAAAA TTTTGTCTTG ACCTACAGAT TGTTAATTTG ACAAATAATA TATTTGTCTA 64475 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TAAGACAAAA TTTTGTCTTG ACCTACAGAT TGTTAATTTG ACAAATAAAA TATTTGTCTA 538 ACAGTGCACA TACACTGAAA ATTTTTGATG CAATTTTATG TGGA 64431 |||||||||| |||||||||| | |||||||| |||||||||| |||| ACAGTGCACA TACACTGAAA AATTTTGATG CAATTTTATG TGGA 582 hqPGS_C04HBa0077O05.1-_SGN-E267707+ (65013 64431) ******************************************************************************** EST sequence 223 +strand 554 n (File: SGN-E205808+) 1 CGAGGATCTT GAATTCAAAT CTGTCATATA GTGTGGACAG ATTAATGGTT GACCAAGTAA 61 AATGCACAAT TCAAGTATAT TTTGTTTCAC TTAGAAAAGT GACATTTTGG ACTGGTAGTC 121 CATAAATCAA GGTATAATGT CAGTGGGGTA CAAATAAATT ATTATGCAAT AATATAACCG 181 TAAGATATCA AATACGGTTT GTGTCTTGGG GCATAAAGGT TTATCGCAAA AATCCTGACA 241 TTATTGGAGA TGTTTTCTCC TTTGGTGGAT GCAATGAGGT TTGTTTTGAT CTGGCAACAT 301 ATGAAAAGCT TGAATGCATG TAATGAATAA TTGTAATGTC TAGCTAGACA ATGAAGGTTA 361 TATGAAAATC CTTGAAACAA TCGAGGTGTC TGAAGCATAC AAGAGTTTGA AAGAAACTTT 421 TTCAATAAAG CTTCAAGAAT CCTTATATGG ATTGAAATAG TCAAGGAAGA AAAGGGTACA 481 AAAGAATGAT CCTAATTGTC CTTGTATTTT TATGAAAAGG TCTTGGTAAG ACAAAATTTT 541 GTCTTGACCT ACAG Predicted gene structure (within gDNA segment 65706 to 63897): Exon 1 65056 64507 ( 550 n); cDNA 6 554 ( 549 n); score: 0.966 MATCH C04HBa0077O05.1- SGN-E205808+ 0.966 550 0.993 C PGS_C04HBa0077O05.1-_SGN-E205808+ (65056 64507) Alignment (genomic DNA sequence = upper lines): ATCTTGAATT CAAATCTGTC ATATAGTGTG AACAGATAAA TGGTTGGCCA AGTAAAATGC 64997 |||||||||| |||||||||| |||||||||| |||||| || |||||| ||| |||||||||| ATCTTGAATT CAAATCTGTC ATATAGTGTG GACAGATTAA TGGTTGACCA AGTAAAATGC 65 ACAATTCAAG TATATTTTGT TTCACTTAGA AAAGTGACAT TTTGGACTGG TAGTCCATAA 64937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATTCAAG TATATTTTGT TTCACTTAGA AAAGTGACAT TTTGGACTGG TAGTCCATAA 125 ATCAAGGTAT AATGTCAGTG GGGTACAAAT AAATTATTAT GCGATAGTAT AACTGTAAGA 64877 |||||||||| |||||||||| |||||||||| |||||||||| || ||| ||| ||| |||||| ATCAAGGTAT AATGTCAGTG GGGTACAAAT AAATTATTAT GCAATAATAT AACCGTAAGA 185 TATCAAATAC GATTTGTGCC TTGGGGCATA AAGGTTTATC GCAAAAATCC TGACATTAGT 64817 |||||||||| | |||||| | |||||||||| |||||||||| |||||||||| |||||||| | TATCAAATAC GGTTTGTGTC TTGGGGCATA AAGGTTTATC GCAAAAATCC TGACATTATT 245 GGAGATGTTT TCTCCTTTGG TGGATGAAAT GAGGTTTGTT TTGATCTGGC AACATATGAA 64757 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| GGAGATGTTT TCTCCTTTGG TGGATGCAAT GAGGTTTGTT TTGATCTGGC AACATATGAA 305 AA-CTTGAAT GCATGTAAAT GAATAATTTT AATGTCTAGC TAGACAATGA ATGTTATATG 64698 || ||||||| |||||| ||| |||||||| | |||||||||| |||||||||| | |||||||| AAGCTTGAAT GCATGT-AAT GAATAATTGT AATGTCTAGC TAGACAATGA AGGTTATATG 364 AAAATCCTTG AAACAATCGA GGTGTCTGAA GCATATAAGA GTTTGAAAGA AACTTTTCCA 64638 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| ||||||| || AAAATCCTTG AAACAATCGA GGTGTCTGAA GCATACAAGA GTTTGAAAGA AACTTTTTCA 424 ATAAAGCTTC AAGAATCCTT ATATGGATTG AAATAGTCAA GGAAGAAAAA GGGTACAAAA 64578 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| ATAAAGCTTC AAGAATCCTT ATATGGATTG AAATAGTCAA GGAAG-AAAA GGGTACAAAA 483 GAATGATCCT AATTGTCCTT GTATTTTTAT GAAAAGGTCT TGGTAAGACA AAATTTTGTC 64518 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGATCCT AATTGTCCTT GTATTTTTAT GAAAAGGTCT TGGTAAGACA AAATTTTGTC 543 TTGACCTACA G 64507 |||||||||| | TTGACCTACA G 554 hqPGS_C04HBa0077O05.1-_SGN-E205808+ (65056 64507) ******************************************************************************** EST sequence 217 +strand 454 n (File: SGN-E202657+) 1 GATCTTGAAT TCAAATCTGT CATATAGTGT GGACAGATTA ATGGTTGACC AAGTAAAATG 61 CACAATTCAA GTATATTTTG TTTCACTTAA AAAAGTGACA TTTTGGACTG GTAGTCCATA 121 AATCAAGGTA TAATGTCAGT GGGGTACAAA TAAATTATTA TGCAATAATA TAACCGTAAG 181 ATATCAAATA CGGGTTGCTT CTTGGGGCAT AAAGGTTTAT CGCAAAAATC CTGACATTAT 241 TGGAGATGTT TTCTCCTTTG GTGGATGCAA TGAGGTTTGA TTTGATCTGG CAACATATGA 301 AAAGCTTGAA TGCATGTAAT GAATAATTGT AATGTCTAGC TAGACAATGA AGGTTATATG 361 AAAATCCTTG AAACAATCGA GGTGTCTGAA GCATACAAGA GTTTGAAAGA AACTTTTTCA 421 ATAAAGCTTC AAGAATCCTT ATATGGATTG AAAT Predicted gene structure (within gDNA segment 65666 to 63994): Exon 1 65056 64604 ( 453 n); cDNA 2 454 ( 453 n); score: 0.950 MATCH C04HBa0077O05.1- SGN-E202657+ 0.950 453 0.998 C PGS_C04HBa0077O05.1-_SGN-E202657+ (65056 64604) Alignment (genomic DNA sequence = upper lines): ATCTTGAATT CAAATCTGTC ATATAGTGTG AACAGATAAA TGGTTGGCCA AGTAAAATGC 64997 |||||||||| |||||||||| |||||||||| |||||| || |||||| ||| |||||||||| ATCTTGAATT CAAATCTGTC ATATAGTGTG GACAGATTAA TGGTTGACCA AGTAAAATGC 61 ACAATTCAAG TATATTTTGT TTCACTTAGA AAAGTGACAT TTTGGACTGG TAGTCCATAA 64937 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| ACAATTCAAG TATATTTTGT TTCACTTAAA AAAGTGACAT TTTGGACTGG TAGTCCATAA 121 ATCAAGGTAT AATGTCAGTG GGGTACAAAT AAATTATTAT GCGATAGTAT AACTGTAAGA 64877 |||||||||| |||||||||| |||||||||| |||||||||| || ||| ||| ||| |||||| ATCAAGGTAT AATGTCAGTG GGGTACAAAT AAATTATTAT GCAATAATAT AACCGTAAGA 181 TATCAAATAC GATTTGTGCC TTGGGGCATA AAGGTTTATC GCAAAAATCC TGACATTAGT 64817 |||||||||| | ||| | |||||||||| |||||||||| |||||||||| |||||||| | TATCAAATAC GGGTTGCTTC TTGGGGCATA AAGGTTTATC GCAAAAATCC TGACATTATT 241 GGAGATGTTT TCTCCTTTGG TGGATGAAAT GAGGTTTGTT TTGATCTGGC AACATATGAA 64757 |||||||||| |||||||||| |||||| ||| |||||||| | |||||||||| |||||||||| GGAGATGTTT TCTCCTTTGG TGGATGCAAT GAGGTTTGAT TTGATCTGGC AACATATGAA 301 AA-CTTGAAT GCATGTAAAT GAATAATTTT AATGTCTAGC TAGACAATGA ATGTTATATG 64698 || ||||||| |||||| ||| |||||||| | |||||||||| |||||||||| | |||||||| AAGCTTGAAT GCATGT-AAT GAATAATTGT AATGTCTAGC TAGACAATGA AGGTTATATG 360 AAAATCCTTG AAACAATCGA GGTGTCTGAA GCATATAAGA GTTTGAAAGA AACTTTTCCA 64638 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| ||||||| || AAAATCCTTG AAACAATCGA GGTGTCTGAA GCATACAAGA GTTTGAAAGA AACTTTTTCA 420 ATAAAGCTTC AAGAATCCTT ATATGGATTG AAAT 64604 |||||||||| |||||||||| |||||||||| |||| ATAAAGCTTC AAGAATCCTT ATATGGATTG AAAT 454 hqPGS_C04HBa0077O05.1-_SGN-E202657+ (65056 64604) ******************************************************************************** EST sequence 122 -strand 664 n (File: SGN-E273497-) 1 CAGAGTTTAT GATACGCCGA AAGCGTAATA GACCAATTGA TTCCAAATAT AAAATTCCTT 61 AAAGAAGGAA GGAGCAAATG ATCAATATGG TCATGATAAT GAGGCAAGTG CTATAAAGGA 121 GCACATTGAC ATAACACTTC ATAAAATCTT GAAAAAGGTT CAGGTACCTG AAATAATGAA 181 AAAAATTGAA GAGATCTCGA TAAGTTATGT CTTGTTGGAA TCGATATCAA ATAACCGTCG 241 ACGGTATCTT TGATATGAGG TAGCGCTCAA TGATATAAAT TGTGATGAGG ATCTTGAATT 301 CAAATCTGTC ATATAGTGTG AACAGATAAA TGGTTAGCCA AGTAAAATGC ACAATTCAAG 361 TATATTTTGT TTCACTTAGA AAAGTGACAT TTTGGACTGG TAGTCCATAA ATCAAGGTAT 421 AATGTCAGTG GGGTACAAAT AAATTATTAT GTGATAGTAT AACCGTAAGA TATCAAATAC 481 GGTTTGTGCC TTGGGGCATA AAGGTTTATC GCAAAAATCC TGACATTATT GGAGATGTTT 541 TCTCCTTTGG TGGATGCAAT GAGGTTTGTT TTGATCTGGC AACATATGAA AAACTTGAAT 601 GCATGTAATG AAAAATTGTA ATGAAGGTTA TATGAAAATC CTTGAAACAA TCCAGGTGTC 661 TGAA Predicted gene structure (within gDNA segment 66120 to 63580): Exon 1 65330 64725 ( 606 n); cDNA 1 622 ( 622 n); score: 0.903 MATCH C04HBa0077O05.1- SGN-E273497- 0.903 606 0.913 C PGS_C04HBa0077O05.1-_SGN-E273497- (65330 64725) Alignment (genomic DNA sequence = upper lines): CAGAGTCTAT GATACGCCGG AAGCGTAATA GACCAATCAA TTCCAAATAT AAAATTCCTT 65271 |||||| ||| ||||||||| |||||||||| ||||||| | |||||||||| |||||||||| CAGAGTTTAT GATACGCCGA AAGCGTAATA GACCAATTGA TTCCAAATAT AAAATTCCTT 60 GAAGAAGGAA GGAGCAAATG ATCAATATGG TCATGATAAT GAGGCAAGTG CTATAAAAGA 65211 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || AAAGAAGGAA GGAGCAAATG ATCAATATGG TCATGATAAT GAGGCAAGTG CTATAAAGGA 120 GCACATTGAC ATAACAATTC ATAAAATCTT GAAAAAGGTT CAGGTACCTG AAATAATG-- 65153 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||| GCACATTGAC ATAACACTTC ATAAAATCTT GAAAAAGGTT CAGGTACCTG AAATAATGAA 180 AAAAA-TGAA GAGATCTCGA TAAGTTATGT CTTGTTGGAA TCGATATCAA ATAACCGTCG 65094 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATTGAA GAGATCTCGA TAAGTTATGT CTTGTTGGAA TCGATATCAA ATAACCGTCG 240 ACGGTATCTT TGATATGAGG TAGCGCTCAA TG------A- --T-AT-A-- ATCTTGAATT 65047 |||||||||| |||||||||| |||||||||| || | | || | |||||||||| ACGGTATCTT TGATATGAGG TAGCGCTCAA TGATATAAAT TGTGATGAGG ATCTTGAATT 300 CAAATCTGTC ATATAGTGTG AACAGATAAA TGGTTGGCCA AGTAAAATGC ACAATTCAAG 64987 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| CAAATCTGTC ATATAGTGTG AACAGATAAA TGGTTAGCCA AGTAAAATGC ACAATTCAAG 360 TATATTTTGT TTCACTTAGA AAAGTGACAT TTTGGACTGG TAGTCCATAA ATCAAGGTAT 64927 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATATTTTGT TTCACTTAGA AAAGTGACAT TTTGGACTGG TAGTCCATAA ATCAAGGTAT 420 AATGTCAGTG GGGTACAAAT AAATTATTAT GCGATAGTAT AACTGTAAGA TATCAAATAC 64867 |||||||||| |||||||||| |||||||||| | |||||||| ||| |||||| |||||||||| AATGTCAGTG GGGTACAAAT AAATTATTAT GTGATAGTAT AACCGTAAGA TATCAAATAC 480 GATTTGTGCC TTGGGGCATA AAGGTTTATC GCAAAAATCC TGACATTAGT GGAGATGTTT 64807 | |||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| GGTTTGTGCC TTGGGGCATA AAGGTTTATC GCAAAAATCC TGACATTATT GGAGATGTTT 540 TCTCCTTTGG TGGATGAAAT GAGGTTTGTT TTGATCTGGC AACATATG-A AAACTTGAAT 64748 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||| | |||||||||| TCTCCTTTGG TGGATGCAAT GAGGTTTGTT TTGATCTGGC AACATATGAA AAACTTGAAT 600 GCATGTAAAT GAATAATTTT AAT 64725 |||||| ||| ||| |||| | ||| GCATGT-AAT GAAAAATTGT AAT 622 hqPGS_C04HBa0077O05.1-_SGN-E273497- (65330 64725) ******************************************************************************** EST sequence 123 -strand 388 n (File: SGN-E273387-) 1 AAATTGTGAT GAGGATCTTG AATTCAAATC TGTCATATAG TGTGAACAGA TAAATGGTTA 61 GCCAAGTAAA ATGCACAATT CAAGTATATT TTGTTTCACT TAGAAAAGTG ACATTTTGGA 121 CTGGTAGTCC ATAAATCAAG GTATAATGTC AGTGGGGTAC AAATAAATTA TTATGTGATA 181 GTATAACCGT AAGATATCAA ATACGGTTTG TGCCTTGGGG CATAAAGGTT TATCGCAAAA 241 ATCCTGACAT TATTGGAGAT GTTTTCTCCT TTGGTGGATG CAATGAGGTT TGTTTTGATC 301 TGGCAACATA TGAAAAACTT GAATGCATGT AATGAAAAAT TGTAATGAAG GTTATATGAA 361 AATCCTTGAA ACAATCCAGG TGTCTGAA Predicted gene structure (within gDNA segment 65806 to 63580): Exon 1 65505 65492 ( 14 n); cDNA 1 13 ( 13 n); score: 0.786 Intron 1 65491 65058 ( 434 n); Pd: 0.748 (s: 0), Pa: 0.000 (s: 0.96) Exon 2 65057 64725 ( 333 n); cDNA 14 346 ( 333 n); score: 0.962 MATCH C04HBa0077O05.1- SGN-E273387- 0.962 347 0.894 C PGS_C04HBa0077O05.1-_SGN-E273387- (65505 65492,65057 64725) Alignment (genomic DNA sequence = upper lines): AAATTATGTG TGAGGTTAAT TATGAATTAT CTAGATCCTC GTTAAAATAA ATATGTGAAC 65446 ||||| || |||| AAATTGTG-A TGAG...... .......... .......... .......... .......... 13 TTAAAGTTCA AGGGATAATT CAGTTGCATA ATATTGCAAA GCAGTTGCCA GATGAATGCA 65386 .......... .......... .......... .......... .......... .......... 13 TTGACCCTAT GATATAATTC AGCTGCAAAT GCTTCAATGT GAATTCCTTG AAGGACAGAG 65326 .......... .......... .......... .......... .......... .......... 13 TCTATGATAC GCCGGAAGCG TAATAGACCA ATCAATTCCA AATATAAAAT TCCTTGAAGA 65266 .......... .......... .......... .......... .......... .......... 13 AGGAAGGAGC AAATGATCAA TATGGTCATG ATAATGAGGC AAGTGCTATA AAAGAGCACA 65206 .......... .......... .......... .......... .......... .......... 13 TTGACATAAC AATTCATAAA ATCTTGAAAA AGGTTCAGGT ACCTGAAATA ATGAAAAATG 65146 .......... .......... .......... .......... .......... .......... 13 AAGAGATCTC GATAAGTTAT GTCTTGTTGG AATCGATATC AAATAACCGT CGACGGTATC 65086 .......... .......... .......... .......... .......... .......... 13 TTTGATATGA GGTAGCGCTC AATGATATAA TCTTGAATTC AAATCTGTCA TATAGTGTGA 65026 | |||||||||| |||||||||| |||||||||| .......... .......... ........GA TCTTGAATTC AAATCTGTCA TATAGTGTGA 45 ACAGATAAAT GGTTGGCCAA GTAAAATGCA CAATTCAAGT ATATTTTGTT TCACTTAGAA 64966 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGATAAAT GGTTAGCCAA GTAAAATGCA CAATTCAAGT ATATTTTGTT TCACTTAGAA 105 AAGTGACATT TTGGACTGGT AGTCCATAAA TCAAGGTATA ATGTCAGTGG GGTACAAATA 64906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTGACATT TTGGACTGGT AGTCCATAAA TCAAGGTATA ATGTCAGTGG GGTACAAATA 165 AATTATTATG CGATAGTATA ACTGTAAGAT ATCAAATACG ATTTGTGCCT TGGGGCATAA 64846 |||||||||| ||||||||| || ||||||| |||||||||| ||||||||| |||||||||| AATTATTATG TGATAGTATA ACCGTAAGAT ATCAAATACG GTTTGTGCCT TGGGGCATAA 225 AGGTTTATCG CAAAAATCCT GACATTAGTG GAGATGTTTT CTCCTTTGGT GGATGAAATG 64786 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ||||| |||| AGGTTTATCG CAAAAATCCT GACATTATTG GAGATGTTTT CTCCTTTGGT GGATGCAATG 285 AGGTTTGTTT TGATCTGGCA ACATATG-AA AACTTGAATG CATGTAAATG AATAATTTTA 64727 |||||||||| |||||||||| ||||||| || |||||||||| ||||| |||| || |||| || AGGTTTGTTT TGATCTGGCA ACATATGAAA AACTTGAATG CATGT-AATG AAAAATTGTA 344 AT 64725 || AT 346 hqPGS_C04HBa0077O05.1-_SGN-E273387- (65057 64725) ******************************************************************************** EST sequence 21 +strand 546 n (File: SGN-E248730+) 1 GAGCAAATTT AATATGATGA ATTTCAATAC TTTTCATCAA AAATATATTA TTTTGCCTCA 61 GTCATCATCT TATCATCAAT TTGGTGCATG GAGACTCAAA CTCAATGTCT TATCCATACA 121 AGGCACATTA GGCCATAATT CTATGGGACT TGAACCCAAT ACCTTATCAT TATGGTGCAT 181 CAAAACTCGA ATTGATGTCT TACCCTCTTG GTGCGATAGA ACTTGAATCT ACCGTCTTAC 241 CCTCAAATAT TTTTCATAAT GAATGACATA AATGAGTCTT TTTTAAACAA ATTTGATAAC 301 ATATTTGAGT TTTTTTCTTA TGGTTAAATG ATGCAAGTGC TTCATCACTT TCATAAAGCA 361 TTTGAACAAT ATTATATATT TGTGCAGAAG AGAGCTACTT CCTAATGGAT ATTATATGCA 421 TCAAAAGATT CACATTACTC GATTTTCAAA GCAGCAAGAA TGTATCGAAT GGAGCTACAA 481 ACTATCAACA CTTTAGTTAA TGGGGAAATT GATTATGAAG ATTTACAATC AAAGTTACTT 541 GTCAAC Predicted gene structure (within gDNA segment 64978 to 72235): Exon 1 67352 67452 ( 101 n); cDNA 62 163 ( 102 n); score: 0.822 Intron 1 67453 67528 ( 76 n); Pd: 0.000 (s: 0.84), Pa: 0.000 (s: 0.82) Exon 2 67529 67633 ( 105 n); cDNA 164 267 ( 104 n); score: 0.748 Intron 2 67634 69289 (1656 n); Pd: 0.580 (s: 0.66), Pa: 0.000 (s: 0) Exon 3 69290 69298 ( 9 n); cDNA 268 276 ( 9 n); score: 0.889 Intron 3 69299 71519 (2221 n); Pd: 0.855 (s: 0), Pa: 0.000 (s: 0) Exon 4 71520 71556 ( 37 n); cDNA 277 311 ( 35 n); score: 0.757 MATCH C04HBa0077O05.1+ SGN-E248730+ 0.784 252 0.462 C PGS_C04HBa0077O05.1+_SGN-E248730+ (67352 67452,67529 67633,69290 69298,71520 71556) Alignment (genomic DNA sequence = upper lines): TCATCATTAT ATCATCATTA TGGTGCAT-- TGACTCAAAC TCAATGTCTT ATCCATATAA 67409 ||||||| | ||||||| | |||||||| ||||||||| |||||||||| ||||||| || TCATCATCTT ATCATCAATT TGGTGCATGG AGACTCAAAC TCAATGTCTT ATCCATACAA 121 GGCGTTTTAC GCCATAATTC TATGAGACTT GAACCCAATC ACGGTGCATC GAAACTCAAA 67469 ||| ||| |||||||||| |||| ||||| ||||||||| || GGCACATTAG GCCATAATTC TATGGGACTT GAACCCAAT- ACC....... .......... 163 TTGATGTCTT ACCCTTTTGG TGCGATAGAA CTTGAATCTA TCGTCTTATC CTCAAATATT 67529 | .......... .......... .......... .......... .......... .........T 164 TTTCATTATG GTGCATCCGG ACTTTAACCT GATGTCTTAC CCTTTTGGTG CGATGAAACT 67589 | |||||||| ||||||| ||| || | |||||||||| ||| |||||| |||| |||| TATCATTATG GTGCATCAAA ACTCGAA-TT GATGTCTTAC CCTCTTGGTG CGATAGAACT 223 TGAATTCATC GTCTTACCCT TAACCAACGG T-ATAATAAA TCGAAGTACA ACATGACTCA 67648 ||||| | | |||||||||| || | | ||||| || | || TGAATCTACC GTCTTACCCT CAAATATTTT TCATAATGAA T-GAC..... .......... 267 TCCTTTGAGT CTTTCAAAAC AATCAAAATA ACATTCAAAT TCATGCTATT AAAATTTTAT 67708 .......... .......... .......... .......... .......... .......... 267 ACCTTCTTCT ATTTAAGAAA TTTTGTATAG CATGTCATAT TCAACCAATA GTAGTATATG 67768 .......... .......... .......... .......... .......... .......... 267 TCTTCGATTC CTGATAATTG TTAGTGACTG AATACTATTT TATTCTAAAT CATAAAAATA 67828 .......... .......... .......... .......... .......... .......... 267 TTCTAGAAAA TACATACCTG ATTTTATGCA TATAATACCT TGATTCTTAT AACGAGATCA 67888 .......... .......... .......... .......... .......... .......... 267 ACCAAAAACA TGAGTTAAAG AAAAAGTAAA ACTCAATCTT AATTGGCTAG AGACTCGTGC 67948 .......... .......... .......... .......... .......... .......... 267 TGATAACGTG TTATAAAATC AAGCTCATGG CAATATAAAT ATAAAGAGAT GAAGACAAGA 68008 .......... .......... .......... .......... .......... .......... 267 GGAGTAAGAT GGAAGATAAG ACTTTCTTCT TATTCAAGTG TATGCAAATC TCATATGTAT 68068 .......... .......... .......... .......... .......... .......... 267 CTATATTACA ATAGTGAATG AACAACCCTA TTTATAGAGT GAGAAATCAC TCCAAAGGTC 68128 .......... .......... .......... .......... .......... .......... 267 ACCATATTAA GTATCATAAT AAATAGATAC ATTCTTATCC AAAAAGGTTC ATGTAACCTA 68188 .......... .......... .......... .......... .......... .......... 267 GTGAATATGA ATGGTTGTTC ATGTACCAAC CTTATGGACT ATCCACTCAT TCAATGAATT 68248 .......... .......... .......... .......... .......... .......... 267 TATAACAGGT ATTACATTAT TAGTGCCTAA CATATATTTT AGCTAATTAG AAAAACTAAA 68308 .......... .......... .......... .......... .......... .......... 267 GAATTCCTAT ATTTTTTTCA ATAACCTTAA TCCAATTCTC TAACTTGTGA ACCTCTAACG 68368 .......... .......... .......... .......... .......... .......... 267 TCATTCATAT TTTTTTCGAT AGCTATGACT CTTCCCATAA CATATGTATT GTATAATGAC 68428 .......... .......... .......... .......... .......... .......... 267 TCTTTCTATC CAAAAACATC TAATTTTTTC ATATATTCTT CAAAATGTGG GTGCACTATT 68488 .......... .......... .......... .......... .......... .......... 267 TTTTTAATCC ATAACTCTAA AGTAATAATC ATCTTCTCAT CAATTTCCAA TTGAAATGAG 68548 .......... .......... .......... .......... .......... .......... 267 TAAGTTTTTT TTTTCCAAAA ACTTATTTTT TCCAGCTGAA ACAAAAGATT GAGATGAAAA 68608 .......... .......... .......... .......... .......... .......... 267 ATTATTAGGA GCTCTATTAT CATGTCAACT AGTTCAACAA TAAGAATATT TAAGTGTTAT 68668 .......... .......... .......... .......... .......... .......... 267 CTCACAAATA TGTTTAATTA TCGAAGAGTC TCAATGAAAT TATTGGCCTA ATTCAAAATT 68728 .......... .......... .......... .......... .......... .......... 267 CTAATAAGAA ACATCAAATA TGTATACATG GTCATTATTT TTAATTATGG ATAGTATTTT 68788 .......... .......... .......... .......... .......... .......... 267 TTCACTCAAA AATCTTGATC AACATCAATA CACTAAAGTA TTATTGCAAT AAGTGTTCTT 68848 .......... .......... .......... .......... .......... .......... 267 ACCAAACATC AATACACTCT AAGAAAATTA TTAATATAAA AAAGTGACTT GTAAAGATTA 68908 .......... .......... .......... .......... .......... .......... 267 TGAAAATTTG AAAATTATTA ATATAAAAAA ATACTTGTAA ATATTACGAA AATTTACTCG 68968 .......... .......... .......... .......... .......... .......... 267 TTCAAGAGGA AAAAATTGAT ATTTGATTGA AAAAGAAAAG ACGAAAATTT GTAGTTGTGA 69028 .......... .......... .......... .......... .......... .......... 267 GAGTTAAAGT TATGCAAAGA CCGAGGGAGA CGATACCGAT ATTAATTTAT AACTTATTAA 69088 .......... .......... .......... .......... .......... .......... 267 ATAAGTCTGA ATGTTGTTAT GATTCTCCTA CGGGTCTTAT CAGTTCAGAC CTTTTCAGAT 69148 .......... .......... .......... .......... .......... .......... 267 TCATTAGGAG GTTTTTTGAA AGAAAAAAAA CAAACGGGCT TAATGGGTTG AATTTAAATC 69208 .......... .......... .......... .......... .......... .......... 267 ATTCATATTC AGACTTAAAA ATCACACACA CTTAATTGGT TGAATCTGAA TGATTAAGAT 69268 .......... .......... .......... .......... .......... .......... 267 TCAGATTTCC ATTAAGTGCA AACAAATGAG GTCTAAATAT TTTTTTTTTC ATTTAATTTG 69328 | ||||||| .......... .......... .ATAAATGAG .......... .......... .......... 276 AAAGTTATAT AATAGGTGTT GATAATTAAA TTGTATTTTA AAGAAAAAAG AGTAGACATA 69388 .......... .......... .......... .......... .......... .......... 276 TTTAATAATA TCTATTTTAA TTGTCTCATT AAAAATAATA TAAGAAAAAT TAGGTGGGAC 69448 .......... .......... .......... .......... .......... .......... 276 AAAATCTTGT AAAGGTAAAA CAGTACAATT TGTATGAACT TTCCCTAAGG AAAAATTCGG 69508 .......... .......... .......... .......... .......... .......... 276 CGTGACAAAA CCTTTAAAGT TTTGAATTTT AATCTTGTGC ATTATCCTCT TCAAAATTGC 69568 .......... .......... .......... .......... .......... .......... 276 ACTTGATTAA GGTTTGATGA ATAAATAAGT TATATTATTA TTGGAATAAA TTTATTGCAC 69628 .......... .......... .......... .......... .......... .......... 276 GTTTATATCA ACATTCTTTT AGAGATCACG TGAAGAGAAA AGTTTTGGTG AAGTGTGTTT 69688 .......... .......... .......... .......... .......... .......... 276 CGTCCTATTT CTTTTTATGA ATTCTCACTT TACTTGGATT ATGCATGTAA CATTATCTTC 69748 .......... .......... .......... .......... .......... .......... 276 ATATAAGTCT AGAGTATTTT GTCACATTTC AAAATGCATT TTTCTCAAAT GAGATGTACC 69808 .......... .......... .......... .......... .......... .......... 276 AACTCAACCA CATATTTCGA ATTGCTTCAT GAATAGCTAT TTCAACATGA TTTGATGAAA 69868 .......... .......... .......... .......... .......... .......... 276 TAGTAATGAT AGACTATTGA CTATTTTGTA GATCGCCAAG ATATAACAGT ATCCCCACAT 69928 .......... .......... .......... .......... .......... .......... 276 ATGAACATGT AGCTTATTTG AGATTGTAAT TTGTGCGAAT TAAATATATT TTGCATCAAT 69988 .......... .......... .......... .......... .......... .......... 276 GTAACCAACA AGATCGGTTT CTTTGATTCC ATTCCAATGT CCCTTGGTAG GAGTGATAAC 70048 .......... .......... .......... .......... .......... .......... 276 GCCAGTACTT TCAACAAAAT GACATGACTA GAAAATAAAT AAAACCTTAG AGACTGATAA 70108 .......... .......... .......... .......... .......... .......... 276 CAATTGAACG AAACACGCAA TTTGCGGAAT CAATAAATTT GTTTCATTAG TTAGATTGTA 70168 .......... .......... .......... .......... .......... .......... 276 AACATAAATT AAAATAAACT ACATCATATA AAATCACAGT GTATGATTCT ATCTTGTTTT 70228 .......... .......... .......... .......... .......... .......... 276 AGAATATAGG TCTCAATGTT TGGTGGTTGA ATCTTCTTAA ATTTTTTTAT TTTTCTTGAC 70288 .......... .......... .......... .......... .......... .......... 276 TACTTCAAGA AGAAGATGGG GGTGAGGGTC TTGTTTTTTT AATAAAGAGA AAAATCTCAT 70348 .......... .......... .......... .......... .......... .......... 276 TGGAAGGCCC TATTTGGTAA ATGCAATAAA ATCATATTAG ATAAAGTTGA AATTTTATTT 70408 .......... .......... .......... .......... .......... .......... 276 GGACTATAAA TTAATGGGCC AATTTTTGTA TTTGAAAAAT ATAAATCATA ATATGAAATT 70468 .......... .......... .......... .......... .......... .......... 276 CTCAAATCAA GATTTTTGAA TAACTTGAAA GTTCATATCA TAATTTACAA TCATAAAATA 70528 .......... .......... .......... .......... .......... .......... 276 AAATCATATG TCCAAATATT GATTTTATCT CAAGTCCAAA CCCTTGCTTA AGGTCTAAGT 70588 .......... .......... .......... .......... .......... .......... 276 GTACATTATA GTCCTATCAA TTGTGTTCCT TTTTTATTTT CATATAAGAA TATATTACTT 70648 .......... .......... .......... .......... .......... .......... 276 ATTTAATTTA CATGAATCTC TCTCGATTTA ATCACATAAA TAATTTAATT TAATTTTTTT 70708 .......... .......... .......... .......... .......... .......... 276 AAAATTATTT TCCTTATTCA CCAATCAAAC GATCTAGAGT TATTATTAAG GTTTGGCCAT 70768 .......... .......... .......... .......... .......... .......... 276 AACTTTATTC TACCAAACTA TGGTATGGTT CAATTCAAGA ATCAATGAAA AATGGGGACC 70828 .......... .......... .......... .......... .......... .......... 276 AAATTAATGT GTGGGCAAAT AATAGTATAT AATTGCTAAC TGCATCTTGG GAGATGATTC 70888 .......... .......... .......... .......... .......... .......... 276 ATTGTCCCTT TTGACCCTAC ACTATGCTTA ATCTTGTCAC ACTATTATAA AGTTTTGAAC 70948 .......... .......... .......... .......... .......... .......... 276 AATTGTTGTT TTTTTCTTTT TACAATTCAA ATAATCTACC AAAGATGATT AAAAATGATT 71008 .......... .......... .......... .......... .......... .......... 276 TTAATTCTGG AAATTACATA AGGTGCCCCT TAAATGTAGT GAGCTTAATT TTTTTGTCTT 71068 .......... .......... .......... .......... .......... .......... 276 TAGCAAAAAA ATTATTAAAG AATAATCTTC CTTCCATTTT AAGCAGAGTT AAAATATATT 71128 .......... .......... .......... .......... .......... .......... 276 TCAAAGAGAA ATGCATATTT TTTGTGAGGA GATTGTTTGT ACTATATGAG AGGAGTACAT 71188 .......... .......... .......... .......... .......... .......... 276 TATAATTTGT ATTTAATTTT ATTTTTTATT GAATTAAAAA AGTTTGATCG ATAAGTGTTA 71248 .......... .......... .......... .......... .......... .......... 276 TATCTTTTTA GAATAACTTT ATGATAGTGT ATTATATTTT GTTATGAACT TATGCTTATT 71308 .......... .......... .......... .......... .......... .......... 276 TTGTAATATT GTGTAAATGA TTGAGGCAAT TTTGATAACT TATGAAAATT TGTCTTTATG 71368 .......... .......... .......... .......... .......... .......... 276 AGCAAAAAAT GCAACTTAAA ATTTCAAATT GAATATCCAA ACAAAAACTT CAATTTCATT 71428 .......... .......... .......... .......... .......... .......... 276 ACATATTTCA TCTTGTATAC TATGTATTAT ACATTATATA TTTCATATAA ATTATACATA 71488 .......... .......... .......... .......... .......... .......... 276 TATATTTATT CTTATTTGGT TTTACATGTA CTCTTTTTTA AATTAATTTA GACACCTTCT 71548 ||||||||| || ||||| || | | | .......... .......... .......... .TCTTTTTTA AACAAATTT- GATAACAT-A 303 TTTCAGTT 71556 ||| |||| TTTGAGTT 311 hqPGS_C04HBa0077O05.1+_SGN-E248730+ (67352 67452,67529 67633,69290 69298,71520 71556) ******************************************************************************** EST sequence 41 +strand 314 n (File: SGN-E254688+) 1 GAATGGAGCA AATTTAATAT GATGAATTTC AATACGTTTC ATCAAAAATG TATTATTTTG 61 CCTCAGTCAT CATCTTATCA TCAATTTGGT GCATGGAGAC TCAAACTCAA TGTCTTATCC 121 ATACAAGGCA CATTAGGCCA TAATTCTATG GGACTTGAAC CCAATACCTT ATCATTATGG 181 TGCATCAAAA CTCGAATTGA TGTCTTACCC TCTTGGTGCG ATAGAACTTG AATCTACCGT 241 CTTACCCTCA AATATTTTTC ATAATGAATG ACATAAATGA GTCTTTTTTA AACAAATTTG 301 ATAACATATT TGAG Predicted gene structure (within gDNA segment 64928 to 68665): Exon 1 67352 67452 ( 101 n); cDNA 67 168 ( 102 n); score: 0.822 Intron 1 67453 67528 ( 76 n); Pd: 0.000 (s: 0.84), Pa: 0.000 (s: 0.82) Exon 2 67529 67612 ( 84 n); cDNA 169 251 ( 83 n); score: 0.821 MATCH C04HBa0077O05.1+ SGN-E254688+ 0.822 185 0.589 C PGS_C04HBa0077O05.1+_SGN-E254688+ (67352 67452,67529 67612) Alignment (genomic DNA sequence = upper lines): TCATCATTAT ATCATCATTA TGGTGCATTG A--CTCAAAC TCAATGTCTT ATCCATATAA 67409 ||||||| | ||||||| | |||||||| | | ||||||| |||||||||| ||||||| || TCATCATCTT ATCATCAATT TGGTGCATGG AGACTCAAAC TCAATGTCTT ATCCATACAA 126 GGCGTTTTAC GCCATAATTC TATGAGACTT GAACCCAATC ACGGTGCATC GAAACTCAAA 67469 ||| ||| |||||||||| |||| ||||| ||||||||| || GGCACATTAG GCCATAATTC TATGGGACTT GAACCCAAT- ACC....... .......... 168 TTGATGTCTT ACCCTTTTGG TGCGATAGAA CTTGAATCTA TCGTCTTATC CTCAAATATT 67529 | .......... .......... .......... .......... .......... .........T 169 TTTCATTATG GTGCATCCGG ACTTTAACCT GATGTCTTAC CCTTTTGGTG CGATGAAACT 67589 | |||||||| ||||||| ||| || | |||||||||| ||| |||||| |||| |||| TATCATTATG GTGCATCAAA ACTCGAA-TT GATGTCTTAC CCTCTTGGTG CGATAGAACT 228 TGAATTCATC GTCTTACCCT TAA 67612 ||||| | | |||||||||| || TGAATCTACC GTCTTACCCT CAA 251 hqPGS_C04HBa0077O05.1+_SGN-E254688+ (67352 67452,67529 67612) ******************************************************************************** EST sequence 133 +strand 421 n (File: SGN-E250127+) 1 AGGAATGGAG CAAATTTAAT ATGATGAATT TCAATACTTT TCATCGGAAA TATATTATTT 61 TGCCTCAGTC ATCATCTTAT CATCAATTTG GTGCATGGAG ACTCAAACTC AATGTCTTAT 121 CCATACAAGG CACATTAGGC CATAATTCTA TGGGACTTGA ACCCAATACC TTATCATTAT 181 GGTGCATCAA AACTCGAATT GATGTCTTAC CCTCTTGGTG CGATAGAACT TGAATCTACC 241 GTCTTACCCT CAAATATTTT TCATAATGAA TGACATAAAT GAGTCTTTTT TAAACAAATT 301 TGATAACATA TTTGAGTTTT TTTCTTATGG TTAAATGATG CAAGTGCTTC ATCACTTTCA 361 TAAAGCATTT GAACAATATT ATATATTTGT GCGAAAGAAA GCTACTTCCT AATGGATATT 421 A Predicted gene structure (within gDNA segment 64908 to 69715): Exon 1 67352 67452 ( 101 n); cDNA 69 170 ( 102 n); score: 0.822 Intron 1 67453 67528 ( 76 n); Pd: 0.000 (s: 0.84), Pa: 0.000 (s: 0.82) Exon 2 67529 67612 ( 84 n); cDNA 171 253 ( 83 n); score: 0.821 MATCH C04HBa0077O05.1+ SGN-E250127+ 0.822 185 0.439 C PGS_C04HBa0077O05.1+_SGN-E250127+ (67352 67452,67529 67612) Alignment (genomic DNA sequence = upper lines): TCATCATTAT ATCATCATTA TGGTGCATTG A--CTCAAAC TCAATGTCTT ATCCATATAA 67409 ||||||| | ||||||| | |||||||| | | ||||||| |||||||||| ||||||| || TCATCATCTT ATCATCAATT TGGTGCATGG AGACTCAAAC TCAATGTCTT ATCCATACAA 128 GGCGTTTTAC GCCATAATTC TATGAGACTT GAACCCAATC ACGGTGCATC GAAACTCAAA 67469 ||| ||| |||||||||| |||| ||||| ||||||||| || GGCACATTAG GCCATAATTC TATGGGACTT GAACCCAAT- ACC....... .......... 170 TTGATGTCTT ACCCTTTTGG TGCGATAGAA CTTGAATCTA TCGTCTTATC CTCAAATATT 67529 | .......... .......... .......... .......... .......... .........T 171 TTTCATTATG GTGCATCCGG ACTTTAACCT GATGTCTTAC CCTTTTGGTG CGATGAAACT 67589 | |||||||| ||||||| ||| || | |||||||||| ||| |||||| |||| |||| TATCATTATG GTGCATCAAA ACTCGAA-TT GATGTCTTAC CCTCTTGGTG CGATAGAACT 230 TGAATTCATC GTCTTACCCT TAA 67612 ||||| | | |||||||||| || TGAATCTACC GTCTTACCCT CAA 253 hqPGS_C04HBa0077O05.1+_SGN-E250127+ (67352 67452,67529 67612) ******************************************************************************** EST sequence 146 +strand 778 n (File: SGN-E260587+) 1 GAGACTCAAA CTCAATGTCT TATCCATACA AGGCACATTA GGCCATAATT CTATGGGACT 61 TGAACCCAAT ACCTTATCAT TATGGTGCAT CAAAACTCGA ATTGATGTCT TACCCTCTTG 121 GTGCGATAGA ACTTGAATCT ACCGTCTTAC CCTCAAATAT TTTTCATAAT GAATGACATA 181 AATGAGTCTT TTTTAAACAA ATTTGATAAC ATATTTGAGT TTTTTTCTTA TGGTTAAATG 241 ATGCAAGTGC TTCATCACTT TCATAAAGCA TTTGAACAAT ATTATATATT TGTGCAGAAG 301 AGAGCTACTT CCTAATGGAT ATTATATGCA TCAAAAGATT CACATTACTC GATTTTCAAA 361 GCAGCAAGAA TGTATCGAAT GGAGCTACAA ACTATCAACA CTTTAGTTAA TGGGGAAATT 421 GATTATGAAG ATTTACAATC AAAGTTACTT GTCAACAAGA ACAAACCAGC TATCATCAAT 481 ATCAATATTG GTAAAAATAC ATACATATAT ATTCTTACAT CTTATAACAT CACTTTTGGT 541 AAATTAGTAT ATATGTGTTT ATAGGAACAA CCTTCAAAGG AGCTATTGAT GACCTCGATT 601 TCGTCATACA AACACTTGAA AATTGTGGTT ATTCAAATGA CAATTATTAT ATCCATTGCG 661 ATGCAGCATT ATGTGGGCTA ATTCTCCCAT TTATCAAACA TGTAAGCTTA TTTTTATTCA 721 ATTTTCCTTC AACGCTCGAT CGAAGTTACN NATGACATAG TTCTTTCTAT GGTATTTG Predicted gene structure (within gDNA segment 65878 to 75455): Exon 1 67452 67539 ( 88 n); cDNA 84 171 ( 88 n); score: 0.932 Intron 1 67540 69282 (1743 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0) Exon 2 69283 69298 ( 16 n); cDNA 172 186 ( 15 n); score: 0.750 Intron 2 69299 71519 (2221 n); Pd: 0.855 (s: 0), Pa: 0.000 (s: 0.73) Exon 3 71520 71559 ( 40 n); cDNA 187 224 ( 38 n); score: 0.725 Intron 3 71560 73504 (1945 n); Pd: 0.000 (s: 0.73), Pa: 0.362 (s: 0) Exon 4 73505 73513 ( 9 n); cDNA 225 233 ( 9 n); score: 0.556 Intron 4 73514 73736 ( 223 n); Pd: 0.172 (s: 0), Pa: 0.000 (s: 0.69) Exon 5 73737 73781 ( 45 n); cDNA 234 273 ( 40 n); score: 0.689 Intron 5 73782 74704 ( 923 n); Pd: 0.900 (s: 0.69), Pa: 0.998 (s: 0) Exon 6 74705 74732 ( 28 n); cDNA 274 302 ( 29 n); score: 0.518 MATCH C04HBa0077O05.1+ SGN-E260587+ 0.932 226 0.290 C PGS_C04HBa0077O05.1+_SGN-E260587+ (67452 67539,69283 69298,71520 71559,73505 73513,73737 73781,74705 74732) Alignment (genomic DNA sequence = upper lines): GGTGCATCGA AACTCAAATT GATGTCTTAC CCTTTTGGTG CGATAGAACT TGAATCTATC 67511 |||||||| | ||||| |||| |||||||||| ||| |||||| |||||||||| |||||||| | GGTGCATCAA AACTCGAATT GATGTCTTAC CCTCTTGGTG CGATAGAACT TGAATCTACC 143 GTCTTATCCT CAAATATTTT TCATTATGGT GCATCCGGAC TTTAACCTGA TGTCTTACCC 67571 |||||| ||| |||||||||| |||| ||| GTCTTACCCT CAAATATTTT TCATAATG.. .......... .......... .......... 171 TTTTGGTGCG ATGAAACTTG AATTCATCGT CTTACCCTTA ACCAACGGTA TAATAAATCG 67631 .......... .......... .......... .......... .......... .......... 171 AAGTACAACA TGACTCATCC TTTGAGTCTT TCAAAACAAT CAAAATAACA TTCAAATTCA 67691 .......... .......... .......... .......... .......... .......... 171 TGCTATTAAA ATTTTATACC TTCTTCTATT TAAGAAATTT TGTATAGCAT GTCATATTCA 67751 .......... .......... .......... .......... .......... .......... 171 ACCAATAGTA GTATATGTCT TCGATTCCTG ATAATTGTTA GTGACTGAAT ACTATTTTAT 67811 .......... .......... .......... .......... .......... .......... 171 TCTAAATCAT AAAAATATTC TAGAAAATAC ATACCTGATT TTATGCATAT AATACCTTGA 67871 .......... .......... .......... .......... .......... .......... 171 TTCTTATAAC GAGATCAACC AAAAACATGA GTTAAAGAAA AAGTAAAACT CAATCTTAAT 67931 .......... .......... .......... .......... .......... .......... 171 TGGCTAGAGA CTCGTGCTGA TAACGTGTTA TAAAATCAAG CTCATGGCAA TATAAATATA 67991 .......... .......... .......... .......... .......... .......... 171 AAGAGATGAA GACAAGAGGA GTAAGATGGA AGATAAGACT TTCTTCTTAT TCAAGTGTAT 68051 .......... .......... .......... .......... .......... .......... 171 GCAAATCTCA TATGTATCTA TATTACAATA GTGAATGAAC AACCCTATTT ATAGAGTGAG 68111 .......... .......... .......... .......... .......... .......... 171 AAATCACTCC AAAGGTCACC ATATTAAGTA TCATAATAAA TAGATACATT CTTATCCAAA 68171 .......... .......... .......... .......... .......... .......... 171 AAGGTTCATG TAACCTAGTG AATATGAATG GTTGTTCATG TACCAACCTT ATGGACTATC 68231 .......... .......... .......... .......... .......... .......... 171 CACTCATTCA ATGAATTTAT AACAGGTATT ACATTATTAG TGCCTAACAT ATATTTTAGC 68291 .......... .......... .......... .......... .......... .......... 171 TAATTAGAAA AACTAAAGAA TTCCTATATT TTTTTCAATA ACCTTAATCC AATTCTCTAA 68351 .......... .......... .......... .......... .......... .......... 171 CTTGTGAACC TCTAACGTCA TTCATATTTT TTTCGATAGC TATGACTCTT CCCATAACAT 68411 .......... .......... .......... .......... .......... .......... 171 ATGTATTGTA TAATGACTCT TTCTATCCAA AAACATCTAA TTTTTTCATA TATTCTTCAA 68471 .......... .......... .......... .......... .......... .......... 171 AATGTGGGTG CACTATTTTT TTAATCCATA ACTCTAAAGT AATAATCATC TTCTCATCAA 68531 .......... .......... .......... .......... .......... .......... 171 TTTCCAATTG AAATGAGTAA GTTTTTTTTT TCCAAAAACT TATTTTTTCC AGCTGAAACA 68591 .......... .......... .......... .......... .......... .......... 171 AAAGATTGAG ATGAAAAATT ATTAGGAGCT CTATTATCAT GTCAACTAGT TCAACAATAA 68651 .......... .......... .......... .......... .......... .......... 171 GAATATTTAA GTGTTATCTC ACAAATATGT TTAATTATCG AAGAGTCTCA ATGAAATTAT 68711 .......... .......... .......... .......... .......... .......... 171 TGGCCTAATT CAAAATTCTA ATAAGAAACA TCAAATATGT ATACATGGTC ATTATTTTTA 68771 .......... .......... .......... .......... .......... .......... 171 ATTATGGATA GTATTTTTTC ACTCAAAAAT CTTGATCAAC ATCAATACAC TAAAGTATTA 68831 .......... .......... .......... .......... .......... .......... 171 TTGCAATAAG TGTTCTTACC AAACATCAAT ACACTCTAAG AAAATTATTA ATATAAAAAA 68891 .......... .......... .......... .......... .......... .......... 171 GTGACTTGTA AAGATTATGA AAATTTGAAA ATTATTAATA TAAAAAAATA CTTGTAAATA 68951 .......... .......... .......... .......... .......... .......... 171 TTACGAAAAT TTACTCGTTC AAGAGGAAAA AATTGATATT TGATTGAAAA AGAAAAGACG 69011 .......... .......... .......... .......... .......... .......... 171 AAAATTTGTA GTTGTGAGAG TTAAAGTTAT GCAAAGACCG AGGGAGACGA TACCGATATT 69071 .......... .......... .......... .......... .......... .......... 171 AATTTATAAC TTATTAAATA AGTCTGAATG TTGTTATGAT TCTCCTACGG GTCTTATCAG 69131 .......... .......... .......... .......... .......... .......... 171 TTCAGACCTT TTCAGATTCA TTAGGAGGTT TTTTGAAAGA AAAAAAACAA ACGGGCTTAA 69191 .......... .......... .......... .......... .......... .......... 171 TGGGTTGAAT TTAAATCATT CATATTCAGA CTTAAAAATC ACACACACTT AATTGGTTGA 69251 .......... .......... .......... .......... .......... .......... 171 ATCTGAATGA TTAAGATTCA GATTTCCATT AAGTGCAAAC AAATGAGGTC TAAATATTTT 69311 | || | | ||||||| .......... .......... .......... .AATG-ACAT AAATGAG... .......... 186 TTTTTTCATT TAATTTGAAA GTTATATAAT AGGTGTTGAT AATTAAATTG TATTTTAAAG 69371 .......... .......... .......... .......... .......... .......... 186 AAAAAAGAGT AGACATATTT AATAATATCT ATTTTAATTG TCTCATTAAA AATAATATAA 69431 .......... .......... .......... .......... .......... .......... 186 GAAAAATTAG GTGGGACAAA ATCTTGTAAA GGTAAAACAG TACAATTTGT ATGAACTTTC 69491 .......... .......... .......... .......... .......... .......... 186 CCTAAGGAAA AATTCGGCGT GACAAAACCT TTAAAGTTTT GAATTTTAAT CTTGTGCATT 69551 .......... .......... .......... .......... .......... .......... 186 ATCCTCTTCA AAATTGCACT TGATTAAGGT TTGATGAATA AATAAGTTAT ATTATTATTG 69611 .......... .......... .......... .......... .......... .......... 186 GAATAAATTT ATTGCACGTT TATATCAACA TTCTTTTAGA GATCACGTGA AGAGAAAAGT 69671 .......... .......... .......... .......... .......... .......... 186 TTTGGTGAAG TGTGTTTCGT CCTATTTCTT TTTATGAATT CTCACTTTAC TTGGATTATG 69731 .......... .......... .......... .......... .......... .......... 186 CATGTAACAT TATCTTCATA TAAGTCTAGA GTATTTTGTC ACATTTCAAA ATGCATTTTT 69791 .......... .......... .......... .......... .......... .......... 186 CTCAAATGAG ATGTACCAAC TCAACCACAT ATTTCGAATT GCTTCATGAA TAGCTATTTC 69851 .......... .......... .......... .......... .......... .......... 186 AACATGATTT GATGAAATAG TAATGATAGA CTATTGACTA TTTTGTAGAT CGCCAAGATA 69911 .......... .......... .......... .......... .......... .......... 186 TAACAGTATC CCCACATATG AACATGTAGC TTATTTGAGA TTGTAATTTG TGCGAATTAA 69971 .......... .......... .......... .......... .......... .......... 186 ATATATTTTG CATCAATGTA ACCAACAAGA TCGGTTTCTT TGATTCCATT CCAATGTCCC 70031 .......... .......... .......... .......... .......... .......... 186 TTGGTAGGAG TGATAACGCC AGTACTTTCA ACAAAATGAC ATGACTAGAA AATAAATAAA 70091 .......... .......... .......... .......... .......... .......... 186 ACCTTAGAGA CTGATAACAA TTGAACGAAA CACGCAATTT GCGGAATCAA TAAATTTGTT 70151 .......... .......... .......... .......... .......... .......... 186 TCATTAGTTA GATTGTAAAC ATAAATTAAA ATAAACTACA TCATATAAAA TCACAGTGTA 70211 .......... .......... .......... .......... .......... .......... 186 TGATTCTATC TTGTTTTAGA ATATAGGTCT CAATGTTTGG TGGTTGAATC TTCTTAAATT 70271 .......... .......... .......... .......... .......... .......... 186 TTTTTATTTT TCTTGACTAC TTCAAGAAGA AGATGGGGGT GAGGGTCTTG TTTTTTTAAT 70331 .......... .......... .......... .......... .......... .......... 186 AAAGAGAAAA ATCTCATTGG AAGGCCCTAT TTGGTAAATG CAATAAAATC ATATTAGATA 70391 .......... .......... .......... .......... .......... .......... 186 AAGTTGAAAT TTTATTTGGA CTATAAATTA ATGGGCCAAT TTTTGTATTT GAAAAATATA 70451 .......... .......... .......... .......... .......... .......... 186 AATCATAATA TGAAATTCTC AAATCAAGAT TTTTGAATAA CTTGAAAGTT CATATCATAA 70511 .......... .......... .......... .......... .......... .......... 186 TTTACAATCA TAAAATAAAA TCATATGTCC AAATATTGAT TTTATCTCAA GTCCAAACCC 70571 .......... .......... .......... .......... .......... .......... 186 TTGCTTAAGG TCTAAGTGTA CATTATAGTC CTATCAATTG TGTTCCTTTT TTATTTTCAT 70631 .......... .......... .......... .......... .......... .......... 186 ATAAGAATAT ATTACTTATT TAATTTACAT GAATCTCTCT CGATTTAATC ACATAAATAA 70691 .......... .......... .......... .......... .......... .......... 186 TTTAATTTAA TTTTTTTAAA ATTATTTTCC TTATTCACCA ATCAAACGAT CTAGAGTTAT 70751 .......... .......... .......... .......... .......... .......... 186 TATTAAGGTT TGGCCATAAC TTTATTCTAC CAAACTATGG TATGGTTCAA TTCAAGAATC 70811 .......... .......... .......... .......... .......... .......... 186 AATGAAAAAT GGGGACCAAA TTAATGTGTG GGCAAATAAT AGTATATAAT TGCTAACTGC 70871 .......... .......... .......... .......... .......... .......... 186 ATCTTGGGAG ATGATTCATT GTCCCTTTTG ACCCTACACT ATGCTTAATC TTGTCACACT 70931 .......... .......... .......... .......... .......... .......... 186 ATTATAAAGT TTTGAACAAT TGTTGTTTTT TTCTTTTTAC AATTCAAATA ATCTACCAAA 70991 .......... .......... .......... .......... .......... .......... 186 GATGATTAAA AATGATTTTA ATTCTGGAAA TTACATAAGG TGCCCCTTAA ATGTAGTGAG 71051 .......... .......... .......... .......... .......... .......... 186 CTTAATTTTT TTGTCTTTAG CAAAAAAATT ATTAAAGAAT AATCTTCCTT CCATTTTAAG 71111 .......... .......... .......... .......... .......... .......... 186 CAGAGTTAAA ATATATTTCA AAGAGAAATG CATATTTTTT GTGAGGAGAT TGTTTGTACT 71171 .......... .......... .......... .......... .......... .......... 186 ATATGAGAGG AGTACATTAT AATTTGTATT TAATTTTATT TTTTATTGAA TTAAAAAAGT 71231 .......... .......... .......... .......... .......... .......... 186 TTGATCGATA AGTGTTATAT CTTTTTAGAA TAACTTTATG ATAGTGTATT ATATTTTGTT 71291 .......... .......... .......... .......... .......... .......... 186 ATGAACTTAT GCTTATTTTG TAATATTGTG TAAATGATTG AGGCAATTTT GATAACTTAT 71351 .......... .......... .......... .......... .......... .......... 186 GAAAATTTGT CTTTATGAGC AAAAAATGCA ACTTAAAATT TCAAATTGAA TATCCAAACA 71411 .......... .......... .......... .......... .......... .......... 186 AAAACTTCAA TTTCATTACA TATTTCATCT TGTATACTAT GTATTATACA TTATATATTT 71471 .......... .......... .......... .......... .......... .......... 186 CATATAAATT ATACATATAT ATTTATTCTT ATTTGGTTTT ACATGTACTC TTTTTTAAAT 71531 || ||||||||| .......... .......... .......... .......... ........TC TTTTTTAAAC 198 TAATTTAGAC ACCTTCTTTT CAGTTCTAGT TAGGACCTAC AATTTGCAGT GATGTGGGTC 71591 ||||| || | | | ||| |||| | AAATTT-GAT AACAT-ATTT GAGTTTTT.. .......... .......... .......... 224 ACTTTGGCCA TTGCAATTGC TTTTAAAAAA AATAATGTTA AAATGAGTAG GGTTAGAGGA 71651 .......... .......... .......... .......... .......... .......... 224 AAAAAGAAAT TATAACATAT GCAATATGCA TAATACTTGC CTTGAGCATT AAATTTATAT 71711 .......... .......... .......... .......... .......... .......... 224 CATTCAATTA TTATTAGTTA ATATACATTC TTATCTCAAA TGACAAATTA GCTCATGGAA 71771 .......... .......... .......... .......... .......... .......... 224 ATATAATCTA CTCATGTTAT AGAACGTTTA AAAGATATAT AAGTCACTTT TGCCTAAATC 71831 .......... .......... .......... .......... .......... .......... 224 GATTACATTT AACAAATAGA ATGACACCTA TCTATACATG AGTAAAAAAT TAATCTAATC 71891 .......... .......... .......... .......... .......... .......... 224 CTAGAGAGGA CATAGCTTAG TGCTTTGTCC ATTTTTGGCC TTGAATTAAA GGGAATCTAA 71951 .......... .......... .......... .......... .......... .......... 224 AGCAACTCCA AGTGCAAATA TATCATAATC ATCAAGACTA AAAATACTAC TATTGCACTC 72011 .......... .......... .......... .......... .......... .......... 224 ACAATAACCC CTGCAATTAC ATGACCCATC CCATAATGAT CTTCTCAACT TATTAATTTT 72071 .......... .......... .......... .......... .......... .......... 224 TGTAATTGTC TCATTTACTT TAACTTTCAT TCCTATCTTC ACTGCTGGAG GTTTCACATC 72131 .......... .......... .......... .......... .......... .......... 224 TTCATTAATA TTCTTTGAAG TAGTCATGAA TATTGCCCAC TCCTCTATCT CCATTCTTGT 72191 .......... .......... .......... .......... .......... .......... 224 TGACTCAAAT ACTCTTCTCC ATGGAATTTC AACTTTTCCC AAGAGTAGTG AGCCACCAAT 72251 .......... .......... .......... .......... .......... .......... 224 ATTCTTCCTA AGAAGAGGAA CATATCTTCT TGATCGTAGC TCGAATATGA TTGTTCCTTG 72311 .......... .......... .......... .......... .......... .......... 224 CTTCATCATG TTAATGGAGT CTTGAGTTCC CATGCAATCC AATGAGAAAG ATTCATCCCA 72371 .......... .......... .......... .......... .......... .......... 224 AAACAAGTTT GATTTTGATG AGATCTCTTG AGTGTTTAGC TTAACTCTTT GGTTGTTGTT 72431 .......... .......... .......... .......... .......... .......... 224 TCCTGTTGGA AGATAACATC TAACAAACAA GTTGTTTTTT CCTAATGGAC TTATTTGTTC 72491 .......... .......... .......... .......... .......... .......... 224 TATGTTTCTT GCTATTATGA TTTGTATTTC ACAACTTATA GATGAAAAAT CATGAGTATT 72551 .......... .......... .......... .......... .......... .......... 224 CTCCATGAAA AAATTAATTA AATTAGAATC TTTGTTTGAT GGGGTTGTTT TATTTTCTTG 72611 .......... .......... .......... .......... .......... .......... 224 AGAGATGGTT GAGTTTGTTA TGGTGATGGG AAACATGTAG TTAGTGGGGG TATTTATAGT 72671 .......... .......... .......... .......... .......... .......... 224 TAAGAAAATA GTTATTTACT TTGGACAGTG GAAGGAAAGT GGCAAGTAGC TAGCTAACTA 72731 .......... .......... .......... .......... .......... .......... 224 GGATTATTTA TTTATTTATT TTTATAAAAT ACAAGTTAAA AAGAAAACCA CCCACCCAAT 72791 .......... .......... .......... .......... .......... .......... 224 GAGGATTAGT GCTAATAATC TATGAAAGGA TTTGATGAGA ATCCTATGAG GATCATATAA 72851 .......... .......... .......... .......... .......... .......... 224 AAGATTGCCT TTGTAAAAAA TTTACAAAAA ACTCTTCAAT ATCTTGAAAG GTTAAAAAAA 72911 .......... .......... .......... .......... .......... .......... 224 ATGTGTGAAA CAACTCTTGA GATAAGTATT AAGGTTGAAT GCATGTTGAT GTGTCAACTA 72971 .......... .......... .......... .......... .......... .......... 224 AGAGCTTAGT GGGTTGATTT GAATCTCCAA ACTGCTATTA AAATATGGCA TTGCATATAA 73031 .......... .......... .......... .......... .......... .......... 224 CATATGACTT TTATTCATTA TAATATAAAG TCATTTGGTC AATGAAAGAG TTCTATAAAT 73091 .......... .......... .......... .......... .......... .......... 224 CTTTTAATTG TATGGAATAG ATACATGATA AGATTGTCAA AAAGACTCTC TTTGTGACAC 73151 .......... .......... .......... .......... .......... .......... 224 ATTCTTTAAG AGTTCTAATG GGCTAAGAGA TACATTTCCT CATGTTAAAT TAGGGTCAAG 73211 .......... .......... .......... .......... .......... .......... 224 AGAGTATAAA AATGTTAGTC ACAACTACTT GTACTTGAAT AATATAGATT GGGTCAAGAT 73271 .......... .......... .......... .......... .......... .......... 224 CAGAGTATAA AATTTAAAAA CCTTAGGGAT AATGCACAAG TACTCCCTTA GTCTATGTCC 73331 .......... .......... .......... .......... .......... .......... 224 GAAATCTCAA AGACACACTT ATACTATACT AAGGTCCTAT TACCCTCCTG AACTTATTTT 73391 .......... .......... .......... .......... .......... .......... 224 TTTTCAAACT AGTGTCACGT AGGTCGAAAA GGATAAAAAA TTACTTATAA ATAAGTTAGG 73451 .......... .......... .......... .......... .......... .......... 224 GGGTAATAGG ACCTTAGTAT AATATAAATG TGTCTCTGAA ATTTAAAGCA TAGGTCAAAG 73511 || | .......... .......... .......... .......... .......... ...TTCTTAT 231 GGGTACTTTT GCATTTTCCC AAAAACTTAC AAGGAATAAA GCTTAATATT ATATTTTAAA 73571 || GG........ .......... .......... .......... .......... .......... 233 AGGCCCTTTT GATAGCCACA TATAGAGGCC ACCTATAGCA AAGAGTGGTA AGTCGAATAT 73631 .......... .......... .......... .......... .......... .......... 233 CTTTCACTAA AAAACTAATA GAGAAAATTA TACGAAGCAT ATAGGTTAAA AATTAGTTTT 73691 .......... .......... .......... .......... .......... .......... 233 CAAAATAAAT ATATACGTAA AATATCAAAC ACATTGTTTA AAAATTTTGA TTTTACCACT 73751 || | | | | | | .......... .......... .......... .......... .....TTAAA TGATGCAAGT 248 GCTATAATGC ACTTATAATT AAAAGCATTT ATATCTTTTT TTCTTAGTTA ACCCTAGTAA 73811 ||| | || | |||| | | | ||||||||| GCT-TCAT-C ACTT-TCA-T -AAAGCATTT .......... .......... .......... 273 TATAATAAAA TAGGATGCAA ATTATTTGCT AAGGCAATAT TGATGGATGG AAATTTTTGA 73871 .......... .......... .......... .......... .......... .......... 273 AAGTTTTGAC CAAACTAAGT CATTATTTAA ATTAATTCAT CAAAACATAC GTTTTAAATT 73931 .......... .......... .......... .......... .......... .......... 273 TTTTTTACAA AACTAGTATA AACATATTTT TGAGTAAGGT TTTAGGGTAT TTTTATTTTA 73991 .......... .......... .......... .......... .......... .......... 273 AAAATTCAAC TGACAAAAGC TGACGACGTT AAATGAGTAA ACATACTCTT GAATAACGTT 74051 .......... .......... .......... .......... .......... .......... 273 TTACACCTAA AACGTTACTC GGGAGTATGT TTTTGGAGCT GGTGTCTGCA TTTGGTTGTA 74111 .......... .......... .......... .......... .......... .......... 273 TCCTGCATCT GGCATGACTT ATTAGTTACA AATGTGTCCT GGCTGGTATA ATGAGGTAGA 74171 .......... .......... .......... .......... .......... .......... 273 AATGATGCTA GGAGGATCAA TATTTGGTTG CTAGTCTTTT CTTCGTAAAG AGGCAATTGC 74231 .......... .......... .......... .......... .......... .......... 273 TAAAAATTAC ACCTAAAACG TTATTTCGGA GTACATTTGA ATTTTTAAAA TAAAAATGCC 74291 .......... .......... .......... .......... .......... .......... 273 CTAAAAGGTT ACTCAAAATT ACGTTTATAC TAGTTCTGTA ATTAAAAACA TATTATTTTG 74351 .......... .......... .......... .......... .......... .......... 273 GTGATCTAGT TTAAATAGTA ACTTAGTTTG GTAAAAAATT CTCCAATATA TAGATAAATG 74411 .......... .......... .......... .......... .......... .......... 273 GATTAAATAA CTCTATATTG GATCTCCTCT TTTGAATATT CTTGGTGAGA TTATTCATAT 74471 .......... .......... .......... .......... .......... .......... 273 ATTCGCCTCC CTAAATTTAA TCTTGTATTC ATTATTTGTT CAAATTAAAG GATTAATTGC 74531 .......... .......... .......... .......... .......... .......... 273 AAATTTACTC CATATCTTTT CGGTAGGAAA GAAATGTTCT CTTGAAATAC GTTTTTTTAG 74591 .......... .......... .......... .......... .......... .......... 273 GAAAATAATT CAATGGATTT TTTATTTATG TTCTTCTGTC TATATGTACG CAAAATTAAA 74651 .......... .......... .......... .......... .......... .......... 273 GATATTATTT TAAAAGTATT TTTATATAAT TTAAATATAT ACTATGGGGG TAGGGCCTA- 74710 | | | .......... .......... .......... .......... .......... ...GAACAAT 280 CTTCAATGGA TGTGAAGATG AG 74732 || || |||| ||| | || ATTATATATT TGTGCAGAAG AG 302 hqPGS_C04HBa0077O05.1+_SGN-E260587+ (67452 67539,69283 69298,71520 71559) ******************************************************************************** EST sequence 149 +strand 740 n (File: SGN-E260602+) 1 GAGACTCAAA CTCAATGTCT TATCCATACA AGGCACATTA GGCCATAATT CTATGGGACT 61 TGAACCCAAT ACCTTATCAT TATGGTGCAT CAAAACTCGA ATTGATGTCT TACCCTCTTG 121 GTGCGATAGA ACTTGAATCT ACCGTCTTAC CCTCAAATAT TTTTCATAAT GAATGACATA 181 AATGAGTCTT TTTTAAACAA ATTTGATAAC ATATTTGAGT TTTTTTCTTA TGGTTAAATG 241 ATGCAAGTGC TTCATCACTT TCATAAAGCA TTTGAACAAT ATTATATATT TGTGCAGAAG 301 AGAGCTACTT CCTAATGGAT ATTATATGCA TCAAAAGATT CACATTACTC GATTTTCAAA 361 GCAGCAAGAA TGTATCGAAT GGAGCTACAA ACTATCAACA CTTTAGTTAA TGGGGAAATT 421 GATTATGAAG ATTTACAATC AAAGTTACTT GTCAACAAGA ACAAACCAGC TATCATCAAT 481 ATCAATATTG GTAAAAATAC ATACATATAT ATTCTTACAT CTTATAACAT CACTTTTGGT 541 AAATTAGTAT ATATGTGTTT ATAGGAACAA CCTTCAGAGG AGCTATTGAT GACCTCGATT 601 TCGGCATACA AACACTTGAA AATTGTGGTT ATTCAAATGA CAATTATTAT ATCCATTGCG 661 ATGCAGCATT ATGTGGGCTA ATTCTCCCAT TTATCAAACA TGTAAGCTTA TTTTTATTCA 721 TTTTTCCTTC AACGCTCGAT Predicted gene structure (within gDNA segment 65878 to 74475): Exon 1 67452 67539 ( 88 n); cDNA 84 171 ( 88 n); score: 0.932 Intron 1 67540 69282 (1743 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0) Exon 2 69283 69298 ( 16 n); cDNA 172 186 ( 15 n); score: 0.750 Intron 2 69299 71519 (2221 n); Pd: 0.855 (s: 0), Pa: 0.000 (s: 0.73) Exon 3 71520 71559 ( 40 n); cDNA 187 224 ( 38 n); score: 0.725 Intron 3 71560 73504 (1945 n); Pd: 0.000 (s: 0.73), Pa: 0.362 (s: 0) Exon 4 73505 73513 ( 9 n); cDNA 225 233 ( 9 n); score: 0.556 Intron 4 73514 73736 ( 223 n); Pd: 0.172 (s: 0), Pa: 0.000 (s: 0.69) Exon 5 73737 73781 ( 45 n); cDNA 234 273 ( 40 n); score: 0.689 MATCH C04HBa0077O05.1+ SGN-E260602+ 0.932 198 0.268 C PGS_C04HBa0077O05.1+_SGN-E260602+ (67452 67539,69283 69298,71520 71559,73505 73513,73737 73781) Alignment (genomic DNA sequence = upper lines): GGTGCATCGA AACTCAAATT GATGTCTTAC CCTTTTGGTG CGATAGAACT TGAATCTATC 67511 |||||||| | ||||| |||| |||||||||| ||| |||||| |||||||||| |||||||| | GGTGCATCAA AACTCGAATT GATGTCTTAC CCTCTTGGTG CGATAGAACT TGAATCTACC 143 GTCTTATCCT CAAATATTTT TCATTATGGT GCATCCGGAC TTTAACCTGA TGTCTTACCC 67571 |||||| ||| |||||||||| |||| ||| GTCTTACCCT CAAATATTTT TCATAATG.. .......... .......... .......... 171 TTTTGGTGCG ATGAAACTTG AATTCATCGT CTTACCCTTA ACCAACGGTA TAATAAATCG 67631 .......... .......... .......... .......... .......... .......... 171 AAGTACAACA TGACTCATCC TTTGAGTCTT TCAAAACAAT CAAAATAACA TTCAAATTCA 67691 .......... .......... .......... .......... .......... .......... 171 TGCTATTAAA ATTTTATACC TTCTTCTATT TAAGAAATTT TGTATAGCAT GTCATATTCA 67751 .......... .......... .......... .......... .......... .......... 171 ACCAATAGTA GTATATGTCT TCGATTCCTG ATAATTGTTA GTGACTGAAT ACTATTTTAT 67811 .......... .......... .......... .......... .......... .......... 171 TCTAAATCAT AAAAATATTC TAGAAAATAC ATACCTGATT TTATGCATAT AATACCTTGA 67871 .......... .......... .......... .......... .......... .......... 171 TTCTTATAAC GAGATCAACC AAAAACATGA GTTAAAGAAA AAGTAAAACT CAATCTTAAT 67931 .......... .......... .......... .......... .......... .......... 171 TGGCTAGAGA CTCGTGCTGA TAACGTGTTA TAAAATCAAG CTCATGGCAA TATAAATATA 67991 .......... .......... .......... .......... .......... .......... 171 AAGAGATGAA GACAAGAGGA GTAAGATGGA AGATAAGACT TTCTTCTTAT TCAAGTGTAT 68051 .......... .......... .......... .......... .......... .......... 171 GCAAATCTCA TATGTATCTA TATTACAATA GTGAATGAAC AACCCTATTT ATAGAGTGAG 68111 .......... .......... .......... .......... .......... .......... 171 AAATCACTCC AAAGGTCACC ATATTAAGTA TCATAATAAA TAGATACATT CTTATCCAAA 68171 .......... .......... .......... .......... .......... .......... 171 AAGGTTCATG TAACCTAGTG AATATGAATG GTTGTTCATG TACCAACCTT ATGGACTATC 68231 .......... .......... .......... .......... .......... .......... 171 CACTCATTCA ATGAATTTAT AACAGGTATT ACATTATTAG TGCCTAACAT ATATTTTAGC 68291 .......... .......... .......... .......... .......... .......... 171 TAATTAGAAA AACTAAAGAA TTCCTATATT TTTTTCAATA ACCTTAATCC AATTCTCTAA 68351 .......... .......... .......... .......... .......... .......... 171 CTTGTGAACC TCTAACGTCA TTCATATTTT TTTCGATAGC TATGACTCTT CCCATAACAT 68411 .......... .......... .......... .......... .......... .......... 171 ATGTATTGTA TAATGACTCT TTCTATCCAA AAACATCTAA TTTTTTCATA TATTCTTCAA 68471 .......... .......... .......... .......... .......... .......... 171 AATGTGGGTG CACTATTTTT TTAATCCATA ACTCTAAAGT AATAATCATC TTCTCATCAA 68531 .......... .......... .......... .......... .......... .......... 171 TTTCCAATTG AAATGAGTAA GTTTTTTTTT TCCAAAAACT TATTTTTTCC AGCTGAAACA 68591 .......... .......... .......... .......... .......... .......... 171 AAAGATTGAG ATGAAAAATT ATTAGGAGCT CTATTATCAT GTCAACTAGT TCAACAATAA 68651 .......... .......... .......... .......... .......... .......... 171 GAATATTTAA GTGTTATCTC ACAAATATGT TTAATTATCG AAGAGTCTCA ATGAAATTAT 68711 .......... .......... .......... .......... .......... .......... 171 TGGCCTAATT CAAAATTCTA ATAAGAAACA TCAAATATGT ATACATGGTC ATTATTTTTA 68771 .......... .......... .......... .......... .......... .......... 171 ATTATGGATA GTATTTTTTC ACTCAAAAAT CTTGATCAAC ATCAATACAC TAAAGTATTA 68831 .......... .......... .......... .......... .......... .......... 171 TTGCAATAAG TGTTCTTACC AAACATCAAT ACACTCTAAG AAAATTATTA ATATAAAAAA 68891 .......... .......... .......... .......... .......... .......... 171 GTGACTTGTA AAGATTATGA AAATTTGAAA ATTATTAATA TAAAAAAATA CTTGTAAATA 68951 .......... .......... .......... .......... .......... .......... 171 TTACGAAAAT TTACTCGTTC AAGAGGAAAA AATTGATATT TGATTGAAAA AGAAAAGACG 69011 .......... .......... .......... .......... .......... .......... 171 AAAATTTGTA GTTGTGAGAG TTAAAGTTAT GCAAAGACCG AGGGAGACGA TACCGATATT 69071 .......... .......... .......... .......... .......... .......... 171 AATTTATAAC TTATTAAATA AGTCTGAATG TTGTTATGAT TCTCCTACGG GTCTTATCAG 69131 .......... .......... .......... .......... .......... .......... 171 TTCAGACCTT TTCAGATTCA TTAGGAGGTT TTTTGAAAGA AAAAAAACAA ACGGGCTTAA 69191 .......... .......... .......... .......... .......... .......... 171 TGGGTTGAAT TTAAATCATT CATATTCAGA CTTAAAAATC ACACACACTT AATTGGTTGA 69251 .......... .......... .......... .......... .......... .......... 171 ATCTGAATGA TTAAGATTCA GATTTCCATT AAGTGCAAAC AAATGAGGTC TAAATATTTT 69311 | || | | ||||||| .......... .......... .......... .AATG-ACAT AAATGAG... .......... 186 TTTTTTCATT TAATTTGAAA GTTATATAAT AGGTGTTGAT AATTAAATTG TATTTTAAAG 69371 .......... .......... .......... .......... .......... .......... 186 AAAAAAGAGT AGACATATTT AATAATATCT ATTTTAATTG TCTCATTAAA AATAATATAA 69431 .......... .......... .......... .......... .......... .......... 186 GAAAAATTAG GTGGGACAAA ATCTTGTAAA GGTAAAACAG TACAATTTGT ATGAACTTTC 69491 .......... .......... .......... .......... .......... .......... 186 CCTAAGGAAA AATTCGGCGT GACAAAACCT TTAAAGTTTT GAATTTTAAT CTTGTGCATT 69551 .......... .......... .......... .......... .......... .......... 186 ATCCTCTTCA AAATTGCACT TGATTAAGGT TTGATGAATA AATAAGTTAT ATTATTATTG 69611 .......... .......... .......... .......... .......... .......... 186 GAATAAATTT ATTGCACGTT TATATCAACA TTCTTTTAGA GATCACGTGA AGAGAAAAGT 69671 .......... .......... .......... .......... .......... .......... 186 TTTGGTGAAG TGTGTTTCGT CCTATTTCTT TTTATGAATT CTCACTTTAC TTGGATTATG 69731 .......... .......... .......... .......... .......... .......... 186 CATGTAACAT TATCTTCATA TAAGTCTAGA GTATTTTGTC ACATTTCAAA ATGCATTTTT 69791 .......... .......... .......... .......... .......... .......... 186 CTCAAATGAG ATGTACCAAC TCAACCACAT ATTTCGAATT GCTTCATGAA TAGCTATTTC 69851 .......... .......... .......... .......... .......... .......... 186 AACATGATTT GATGAAATAG TAATGATAGA CTATTGACTA TTTTGTAGAT CGCCAAGATA 69911 .......... .......... .......... .......... .......... .......... 186 TAACAGTATC CCCACATATG AACATGTAGC TTATTTGAGA TTGTAATTTG TGCGAATTAA 69971 .......... .......... .......... .......... .......... .......... 186 ATATATTTTG CATCAATGTA ACCAACAAGA TCGGTTTCTT TGATTCCATT CCAATGTCCC 70031 .......... .......... .......... .......... .......... .......... 186 TTGGTAGGAG TGATAACGCC AGTACTTTCA ACAAAATGAC ATGACTAGAA AATAAATAAA 70091 .......... .......... .......... .......... .......... .......... 186 ACCTTAGAGA CTGATAACAA TTGAACGAAA CACGCAATTT GCGGAATCAA TAAATTTGTT 70151 .......... .......... .......... .......... .......... .......... 186 TCATTAGTTA GATTGTAAAC ATAAATTAAA ATAAACTACA TCATATAAAA TCACAGTGTA 70211 .......... .......... .......... .......... .......... .......... 186 TGATTCTATC TTGTTTTAGA ATATAGGTCT CAATGTTTGG TGGTTGAATC TTCTTAAATT 70271 .......... .......... .......... .......... .......... .......... 186 TTTTTATTTT TCTTGACTAC TTCAAGAAGA AGATGGGGGT GAGGGTCTTG TTTTTTTAAT 70331 .......... .......... .......... .......... .......... .......... 186 AAAGAGAAAA ATCTCATTGG AAGGCCCTAT TTGGTAAATG CAATAAAATC ATATTAGATA 70391 .......... .......... .......... .......... .......... .......... 186 AAGTTGAAAT TTTATTTGGA CTATAAATTA ATGGGCCAAT TTTTGTATTT GAAAAATATA 70451 .......... .......... .......... .......... .......... .......... 186 AATCATAATA TGAAATTCTC AAATCAAGAT TTTTGAATAA CTTGAAAGTT CATATCATAA 70511 .......... .......... .......... .......... .......... .......... 186 TTTACAATCA TAAAATAAAA TCATATGTCC AAATATTGAT TTTATCTCAA GTCCAAACCC 70571 .......... .......... .......... .......... .......... .......... 186 TTGCTTAAGG TCTAAGTGTA CATTATAGTC CTATCAATTG TGTTCCTTTT TTATTTTCAT 70631 .......... .......... .......... .......... .......... .......... 186 ATAAGAATAT ATTACTTATT TAATTTACAT GAATCTCTCT CGATTTAATC ACATAAATAA 70691 .......... .......... .......... .......... .......... .......... 186 TTTAATTTAA TTTTTTTAAA ATTATTTTCC TTATTCACCA ATCAAACGAT CTAGAGTTAT 70751 .......... .......... .......... .......... .......... .......... 186 TATTAAGGTT TGGCCATAAC TTTATTCTAC CAAACTATGG TATGGTTCAA TTCAAGAATC 70811 .......... .......... .......... .......... .......... .......... 186 AATGAAAAAT GGGGACCAAA TTAATGTGTG GGCAAATAAT AGTATATAAT TGCTAACTGC 70871 .......... .......... .......... .......... .......... .......... 186 ATCTTGGGAG ATGATTCATT GTCCCTTTTG ACCCTACACT ATGCTTAATC TTGTCACACT 70931 .......... .......... .......... .......... .......... .......... 186 ATTATAAAGT TTTGAACAAT TGTTGTTTTT TTCTTTTTAC AATTCAAATA ATCTACCAAA 70991 .......... .......... .......... .......... .......... .......... 186 GATGATTAAA AATGATTTTA ATTCTGGAAA TTACATAAGG TGCCCCTTAA ATGTAGTGAG 71051 .......... .......... .......... .......... .......... .......... 186 CTTAATTTTT TTGTCTTTAG CAAAAAAATT ATTAAAGAAT AATCTTCCTT CCATTTTAAG 71111 .......... .......... .......... .......... .......... .......... 186 CAGAGTTAAA ATATATTTCA AAGAGAAATG CATATTTTTT GTGAGGAGAT TGTTTGTACT 71171 .......... .......... .......... .......... .......... .......... 186 ATATGAGAGG AGTACATTAT AATTTGTATT TAATTTTATT TTTTATTGAA TTAAAAAAGT 71231 .......... .......... .......... .......... .......... .......... 186 TTGATCGATA AGTGTTATAT CTTTTTAGAA TAACTTTATG ATAGTGTATT ATATTTTGTT 71291 .......... .......... .......... .......... .......... .......... 186 ATGAACTTAT GCTTATTTTG TAATATTGTG TAAATGATTG AGGCAATTTT GATAACTTAT 71351 .......... .......... .......... .......... .......... .......... 186 GAAAATTTGT CTTTATGAGC AAAAAATGCA ACTTAAAATT TCAAATTGAA TATCCAAACA 71411 .......... .......... .......... .......... .......... .......... 186 AAAACTTCAA TTTCATTACA TATTTCATCT TGTATACTAT GTATTATACA TTATATATTT 71471 .......... .......... .......... .......... .......... .......... 186 CATATAAATT ATACATATAT ATTTATTCTT ATTTGGTTTT ACATGTACTC TTTTTTAAAT 71531 || ||||||||| .......... .......... .......... .......... ........TC TTTTTTAAAC 198 TAATTTAGAC ACCTTCTTTT CAGTTCTAGT TAGGACCTAC AATTTGCAGT GATGTGGGTC 71591 ||||| || | | | ||| |||| | AAATTT-GAT AACAT-ATTT GAGTTTTT.. .......... .......... .......... 224 ACTTTGGCCA TTGCAATTGC TTTTAAAAAA AATAATGTTA AAATGAGTAG GGTTAGAGGA 71651 .......... .......... .......... .......... .......... .......... 224 AAAAAGAAAT TATAACATAT GCAATATGCA TAATACTTGC CTTGAGCATT AAATTTATAT 71711 .......... .......... .......... .......... .......... .......... 224 CATTCAATTA TTATTAGTTA ATATACATTC TTATCTCAAA TGACAAATTA GCTCATGGAA 71771 .......... .......... .......... .......... .......... .......... 224 ATATAATCTA CTCATGTTAT AGAACGTTTA AAAGATATAT AAGTCACTTT TGCCTAAATC 71831 .......... .......... .......... .......... .......... .......... 224 GATTACATTT AACAAATAGA ATGACACCTA TCTATACATG AGTAAAAAAT TAATCTAATC 71891 .......... .......... .......... .......... .......... .......... 224 CTAGAGAGGA CATAGCTTAG TGCTTTGTCC ATTTTTGGCC TTGAATTAAA GGGAATCTAA 71951 .......... .......... .......... .......... .......... .......... 224 AGCAACTCCA AGTGCAAATA TATCATAATC ATCAAGACTA AAAATACTAC TATTGCACTC 72011 .......... .......... .......... .......... .......... .......... 224 ACAATAACCC CTGCAATTAC ATGACCCATC CCATAATGAT CTTCTCAACT TATTAATTTT 72071 .......... .......... .......... .......... .......... .......... 224 TGTAATTGTC TCATTTACTT TAACTTTCAT TCCTATCTTC ACTGCTGGAG GTTTCACATC 72131 .......... .......... .......... .......... .......... .......... 224 TTCATTAATA TTCTTTGAAG TAGTCATGAA TATTGCCCAC TCCTCTATCT CCATTCTTGT 72191 .......... .......... .......... .......... .......... .......... 224 TGACTCAAAT ACTCTTCTCC ATGGAATTTC AACTTTTCCC AAGAGTAGTG AGCCACCAAT 72251 .......... .......... .......... .......... .......... .......... 224 ATTCTTCCTA AGAAGAGGAA CATATCTTCT TGATCGTAGC TCGAATATGA TTGTTCCTTG 72311 .......... .......... .......... .......... .......... .......... 224 CTTCATCATG TTAATGGAGT CTTGAGTTCC CATGCAATCC AATGAGAAAG ATTCATCCCA 72371 .......... .......... .......... .......... .......... .......... 224 AAACAAGTTT GATTTTGATG AGATCTCTTG AGTGTTTAGC TTAACTCTTT GGTTGTTGTT 72431 .......... .......... .......... .......... .......... .......... 224 TCCTGTTGGA AGATAACATC TAACAAACAA GTTGTTTTTT CCTAATGGAC TTATTTGTTC 72491 .......... .......... .......... .......... .......... .......... 224 TATGTTTCTT GCTATTATGA TTTGTATTTC ACAACTTATA GATGAAAAAT CATGAGTATT 72551 .......... .......... .......... .......... .......... .......... 224 CTCCATGAAA AAATTAATTA AATTAGAATC TTTGTTTGAT GGGGTTGTTT TATTTTCTTG 72611 .......... .......... .......... .......... .......... .......... 224 AGAGATGGTT GAGTTTGTTA TGGTGATGGG AAACATGTAG TTAGTGGGGG TATTTATAGT 72671 .......... .......... .......... .......... .......... .......... 224 TAAGAAAATA GTTATTTACT TTGGACAGTG GAAGGAAAGT GGCAAGTAGC TAGCTAACTA 72731 .......... .......... .......... .......... .......... .......... 224 GGATTATTTA TTTATTTATT TTTATAAAAT ACAAGTTAAA AAGAAAACCA CCCACCCAAT 72791 .......... .......... .......... .......... .......... .......... 224 GAGGATTAGT GCTAATAATC TATGAAAGGA TTTGATGAGA ATCCTATGAG GATCATATAA 72851 .......... .......... .......... .......... .......... .......... 224 AAGATTGCCT TTGTAAAAAA TTTACAAAAA ACTCTTCAAT ATCTTGAAAG GTTAAAAAAA 72911 .......... .......... .......... .......... .......... .......... 224 ATGTGTGAAA CAACTCTTGA GATAAGTATT AAGGTTGAAT GCATGTTGAT GTGTCAACTA 72971 .......... .......... .......... .......... .......... .......... 224 AGAGCTTAGT GGGTTGATTT GAATCTCCAA ACTGCTATTA AAATATGGCA TTGCATATAA 73031 .......... .......... .......... .......... .......... .......... 224 CATATGACTT TTATTCATTA TAATATAAAG TCATTTGGTC AATGAAAGAG TTCTATAAAT 73091 .......... .......... .......... .......... .......... .......... 224 CTTTTAATTG TATGGAATAG ATACATGATA AGATTGTCAA AAAGACTCTC TTTGTGACAC 73151 .......... .......... .......... .......... .......... .......... 224 ATTCTTTAAG AGTTCTAATG GGCTAAGAGA TACATTTCCT CATGTTAAAT TAGGGTCAAG 73211 .......... .......... .......... .......... .......... .......... 224 AGAGTATAAA AATGTTAGTC ACAACTACTT GTACTTGAAT AATATAGATT GGGTCAAGAT 73271 .......... .......... .......... .......... .......... .......... 224 CAGAGTATAA AATTTAAAAA CCTTAGGGAT AATGCACAAG TACTCCCTTA GTCTATGTCC 73331 .......... .......... .......... .......... .......... .......... 224 GAAATCTCAA AGACACACTT ATACTATACT AAGGTCCTAT TACCCTCCTG AACTTATTTT 73391 .......... .......... .......... .......... .......... .......... 224 TTTTCAAACT AGTGTCACGT AGGTCGAAAA GGATAAAAAA TTACTTATAA ATAAGTTAGG 73451 .......... .......... .......... .......... .......... .......... 224 GGGTAATAGG ACCTTAGTAT AATATAAATG TGTCTCTGAA ATTTAAAGCA TAGGTCAAAG 73511 || | .......... .......... .......... .......... .......... ...TTCTTAT 231 GGGTACTTTT GCATTTTCCC AAAAACTTAC AAGGAATAAA GCTTAATATT ATATTTTAAA 73571 || GG........ .......... .......... .......... .......... .......... 233 AGGCCCTTTT GATAGCCACA TATAGAGGCC ACCTATAGCA AAGAGTGGTA AGTCGAATAT 73631 .......... .......... .......... .......... .......... .......... 233 CTTTCACTAA AAAACTAATA GAGAAAATTA TACGAAGCAT ATAGGTTAAA AATTAGTTTT 73691 .......... .......... .......... .......... .......... .......... 233 CAAAATAAAT ATATACGTAA AATATCAAAC ACATTGTTTA AAAATTTTGA TTTTACCACT 73751 || | | | | | | .......... .......... .......... .......... .....TTAAA TGATGCAAGT 248 GCTATAATGC ACTTATAATT AAAAGCATTT 73781 ||| | || | |||| | | | ||||||||| GCT-TCAT-C ACTT-TCA-T -AAAGCATTT 273 hqPGS_C04HBa0077O05.1+_SGN-E260602+ (67452 67539,69283 69298,71520 71559) ******************************************************************************** EST sequence 26 +strand 780 n (File: SGN-E263280+) 1 GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 61 TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTCGAATT GATGTCTTAC 121 CCTCTTGGTG CGATAGAACT TGAATCTACC GTCTTACCCT CAAATATTTT TCATAATGAA 181 TGACATAAAT GAGTCTTTTT TAAACAAATT TGATAACATA TTTGAGTTTT TTTCTTATGG 241 TTAAATGATG CAAGTGCTTC ATCACTTTCA TAAAGCATTT GAACAATATT ATATATTTGT 301 GCAGAAGAGA GCTACTTCCT AATGGATATT ATATGCATCA AAAGATTCAC ATTACTCGAT 361 TTTCAAAGCA GCAAGAATGT ATCGAATGGA GCTACAAACT ATCAACACTT TAGTTAATGG 421 GGAAATTGAT TATGAAGATT TACAATCAAA GTTACTTGTC AACAAGAACA AACCAGCTAT 481 CATCAATATC AATATTGGAA CAACCTTCAA AGGAGCTATT GATGACCTCG ATTTCGTCAT 541 ACAAACACTT GGAAAATTGT GGTTATTCAA ATGACAATTA TTATATCCAT TGCGATGCAG 601 CATTATGTGG GCTAATTCTC CCATTTATCA AACATGCAAA AAAAATTACC TTCAAGAAAC 661 CAATTGGAAG TATTTCAATT TCAGGGCACA AATTCTTGGG ATGTCCAATG GTCTTGTGGC 721 GTTCAGATAA CAGGGNAGAG TTACGTTAGC ACCCTCTCAA AAATTGAGTA TATTAATTCC Predicted gene structure (within gDNA segment 65808 to 75405): Exon 1 67452 67539 ( 88 n); cDNA 91 178 ( 88 n); score: 0.932 Intron 1 67540 69282 (1743 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0) Exon 2 69283 69298 ( 16 n); cDNA 179 193 ( 15 n); score: 0.750 Intron 2 69299 71519 (2221 n); Pd: 0.855 (s: 0), Pa: 0.000 (s: 0.73) Exon 3 71520 71559 ( 40 n); cDNA 194 231 ( 38 n); score: 0.725 Intron 3 71560 73504 (1945 n); Pd: 0.000 (s: 0.73), Pa: 0.362 (s: 0) Exon 4 73505 73513 ( 9 n); cDNA 232 240 ( 9 n); score: 0.556 Intron 4 73514 73736 ( 223 n); Pd: 0.172 (s: 0), Pa: 0.000 (s: 0.69) Exon 5 73737 73781 ( 45 n); cDNA 241 280 ( 40 n); score: 0.689 Intron 5 73782 74704 ( 923 n); Pd: 0.900 (s: 0.69), Pa: 0.998 (s: 0) Exon 6 74705 74732 ( 28 n); cDNA 281 309 ( 29 n); score: 0.518 MATCH C04HBa0077O05.1+ SGN-E263280+ 0.932 226 0.290 C PGS_C04HBa0077O05.1+_SGN-E263280+ (67452 67539,69283 69298,71520 71559,73505 73513,73737 73781,74705 74732) Alignment (genomic DNA sequence = upper lines): GGTGCATCGA AACTCAAATT GATGTCTTAC CCTTTTGGTG CGATAGAACT TGAATCTATC 67511 |||||||| | ||||| |||| |||||||||| ||| |||||| |||||||||| |||||||| | GGTGCATCAA AACTCGAATT GATGTCTTAC CCTCTTGGTG CGATAGAACT TGAATCTACC 150 GTCTTATCCT CAAATATTTT TCATTATGGT GCATCCGGAC TTTAACCTGA TGTCTTACCC 67571 |||||| ||| |||||||||| |||| ||| GTCTTACCCT CAAATATTTT TCATAATG.. .......... .......... .......... 178 TTTTGGTGCG ATGAAACTTG AATTCATCGT CTTACCCTTA ACCAACGGTA TAATAAATCG 67631 .......... .......... .......... .......... .......... .......... 178 AAGTACAACA TGACTCATCC TTTGAGTCTT TCAAAACAAT CAAAATAACA TTCAAATTCA 67691 .......... .......... .......... .......... .......... .......... 178 TGCTATTAAA ATTTTATACC TTCTTCTATT TAAGAAATTT TGTATAGCAT GTCATATTCA 67751 .......... .......... .......... .......... .......... .......... 178 ACCAATAGTA GTATATGTCT TCGATTCCTG ATAATTGTTA GTGACTGAAT ACTATTTTAT 67811 .......... .......... .......... .......... .......... .......... 178 TCTAAATCAT AAAAATATTC TAGAAAATAC ATACCTGATT TTATGCATAT AATACCTTGA 67871 .......... .......... .......... .......... .......... .......... 178 TTCTTATAAC GAGATCAACC AAAAACATGA GTTAAAGAAA AAGTAAAACT CAATCTTAAT 67931 .......... .......... .......... .......... .......... .......... 178 TGGCTAGAGA CTCGTGCTGA TAACGTGTTA TAAAATCAAG CTCATGGCAA TATAAATATA 67991 .......... .......... .......... .......... .......... .......... 178 AAGAGATGAA GACAAGAGGA GTAAGATGGA AGATAAGACT TTCTTCTTAT TCAAGTGTAT 68051 .......... .......... .......... .......... .......... .......... 178 GCAAATCTCA TATGTATCTA TATTACAATA GTGAATGAAC AACCCTATTT ATAGAGTGAG 68111 .......... .......... .......... .......... .......... .......... 178 AAATCACTCC AAAGGTCACC ATATTAAGTA TCATAATAAA TAGATACATT CTTATCCAAA 68171 .......... .......... .......... .......... .......... .......... 178 AAGGTTCATG TAACCTAGTG AATATGAATG GTTGTTCATG TACCAACCTT ATGGACTATC 68231 .......... .......... .......... .......... .......... .......... 178 CACTCATTCA ATGAATTTAT AACAGGTATT ACATTATTAG TGCCTAACAT ATATTTTAGC 68291 .......... .......... .......... .......... .......... .......... 178 TAATTAGAAA AACTAAAGAA TTCCTATATT TTTTTCAATA ACCTTAATCC AATTCTCTAA 68351 .......... .......... .......... .......... .......... .......... 178 CTTGTGAACC TCTAACGTCA TTCATATTTT TTTCGATAGC TATGACTCTT CCCATAACAT 68411 .......... .......... .......... .......... .......... .......... 178 ATGTATTGTA TAATGACTCT TTCTATCCAA AAACATCTAA TTTTTTCATA TATTCTTCAA 68471 .......... .......... .......... .......... .......... .......... 178 AATGTGGGTG CACTATTTTT TTAATCCATA ACTCTAAAGT AATAATCATC TTCTCATCAA 68531 .......... .......... .......... .......... .......... .......... 178 TTTCCAATTG AAATGAGTAA GTTTTTTTTT TCCAAAAACT TATTTTTTCC AGCTGAAACA 68591 .......... .......... .......... .......... .......... .......... 178 AAAGATTGAG ATGAAAAATT ATTAGGAGCT CTATTATCAT GTCAACTAGT TCAACAATAA 68651 .......... .......... .......... .......... .......... .......... 178 GAATATTTAA GTGTTATCTC ACAAATATGT TTAATTATCG AAGAGTCTCA ATGAAATTAT 68711 .......... .......... .......... .......... .......... .......... 178 TGGCCTAATT CAAAATTCTA ATAAGAAACA TCAAATATGT ATACATGGTC ATTATTTTTA 68771 .......... .......... .......... .......... .......... .......... 178 ATTATGGATA GTATTTTTTC ACTCAAAAAT CTTGATCAAC ATCAATACAC TAAAGTATTA 68831 .......... .......... .......... .......... .......... .......... 178 TTGCAATAAG TGTTCTTACC AAACATCAAT ACACTCTAAG AAAATTATTA ATATAAAAAA 68891 .......... .......... .......... .......... .......... .......... 178 GTGACTTGTA AAGATTATGA AAATTTGAAA ATTATTAATA TAAAAAAATA CTTGTAAATA 68951 .......... .......... .......... .......... .......... .......... 178 TTACGAAAAT TTACTCGTTC AAGAGGAAAA AATTGATATT TGATTGAAAA AGAAAAGACG 69011 .......... .......... .......... .......... .......... .......... 178 AAAATTTGTA GTTGTGAGAG TTAAAGTTAT GCAAAGACCG AGGGAGACGA TACCGATATT 69071 .......... .......... .......... .......... .......... .......... 178 AATTTATAAC TTATTAAATA AGTCTGAATG TTGTTATGAT TCTCCTACGG GTCTTATCAG 69131 .......... .......... .......... .......... .......... .......... 178 TTCAGACCTT TTCAGATTCA TTAGGAGGTT TTTTGAAAGA AAAAAAACAA ACGGGCTTAA 69191 .......... .......... .......... .......... .......... .......... 178 TGGGTTGAAT TTAAATCATT CATATTCAGA CTTAAAAATC ACACACACTT AATTGGTTGA 69251 .......... .......... .......... .......... .......... .......... 178 ATCTGAATGA TTAAGATTCA GATTTCCATT AAGTGCAAAC AAATGAGGTC TAAATATTTT 69311 | || | | ||||||| .......... .......... .......... .AATG-ACAT AAATGAG... .......... 193 TTTTTTCATT TAATTTGAAA GTTATATAAT AGGTGTTGAT AATTAAATTG TATTTTAAAG 69371 .......... .......... .......... .......... .......... .......... 193 AAAAAAGAGT AGACATATTT AATAATATCT ATTTTAATTG TCTCATTAAA AATAATATAA 69431 .......... .......... .......... .......... .......... .......... 193 GAAAAATTAG GTGGGACAAA ATCTTGTAAA GGTAAAACAG TACAATTTGT ATGAACTTTC 69491 .......... .......... .......... .......... .......... .......... 193 CCTAAGGAAA AATTCGGCGT GACAAAACCT TTAAAGTTTT GAATTTTAAT CTTGTGCATT 69551 .......... .......... .......... .......... .......... .......... 193 ATCCTCTTCA AAATTGCACT TGATTAAGGT TTGATGAATA AATAAGTTAT ATTATTATTG 69611 .......... .......... .......... .......... .......... .......... 193 GAATAAATTT ATTGCACGTT TATATCAACA TTCTTTTAGA GATCACGTGA AGAGAAAAGT 69671 .......... .......... .......... .......... .......... .......... 193 TTTGGTGAAG TGTGTTTCGT CCTATTTCTT TTTATGAATT CTCACTTTAC TTGGATTATG 69731 .......... .......... .......... .......... .......... .......... 193 CATGTAACAT TATCTTCATA TAAGTCTAGA GTATTTTGTC ACATTTCAAA ATGCATTTTT 69791 .......... .......... .......... .......... .......... .......... 193 CTCAAATGAG ATGTACCAAC TCAACCACAT ATTTCGAATT GCTTCATGAA TAGCTATTTC 69851 .......... .......... .......... .......... .......... .......... 193 AACATGATTT GATGAAATAG TAATGATAGA CTATTGACTA TTTTGTAGAT CGCCAAGATA 69911 .......... .......... .......... .......... .......... .......... 193 TAACAGTATC CCCACATATG AACATGTAGC TTATTTGAGA TTGTAATTTG TGCGAATTAA 69971 .......... .......... .......... .......... .......... .......... 193 ATATATTTTG CATCAATGTA ACCAACAAGA TCGGTTTCTT TGATTCCATT CCAATGTCCC 70031 .......... .......... .......... .......... .......... .......... 193 TTGGTAGGAG TGATAACGCC AGTACTTTCA ACAAAATGAC ATGACTAGAA AATAAATAAA 70091 .......... .......... .......... .......... .......... .......... 193 ACCTTAGAGA CTGATAACAA TTGAACGAAA CACGCAATTT GCGGAATCAA TAAATTTGTT 70151 .......... .......... .......... .......... .......... .......... 193 TCATTAGTTA GATTGTAAAC ATAAATTAAA ATAAACTACA TCATATAAAA TCACAGTGTA 70211 .......... .......... .......... .......... .......... .......... 193 TGATTCTATC TTGTTTTAGA ATATAGGTCT CAATGTTTGG TGGTTGAATC TTCTTAAATT 70271 .......... .......... .......... .......... .......... .......... 193 TTTTTATTTT TCTTGACTAC TTCAAGAAGA AGATGGGGGT GAGGGTCTTG TTTTTTTAAT 70331 .......... .......... .......... .......... .......... .......... 193 AAAGAGAAAA ATCTCATTGG AAGGCCCTAT TTGGTAAATG CAATAAAATC ATATTAGATA 70391 .......... .......... .......... .......... .......... .......... 193 AAGTTGAAAT TTTATTTGGA CTATAAATTA ATGGGCCAAT TTTTGTATTT GAAAAATATA 70451 .......... .......... .......... .......... .......... .......... 193 AATCATAATA TGAAATTCTC AAATCAAGAT TTTTGAATAA CTTGAAAGTT CATATCATAA 70511 .......... .......... .......... .......... .......... .......... 193 TTTACAATCA TAAAATAAAA TCATATGTCC AAATATTGAT TTTATCTCAA GTCCAAACCC 70571 .......... .......... .......... .......... .......... .......... 193 TTGCTTAAGG TCTAAGTGTA CATTATAGTC CTATCAATTG TGTTCCTTTT TTATTTTCAT 70631 .......... .......... .......... .......... .......... .......... 193 ATAAGAATAT ATTACTTATT TAATTTACAT GAATCTCTCT CGATTTAATC ACATAAATAA 70691 .......... .......... .......... .......... .......... .......... 193 TTTAATTTAA TTTTTTTAAA ATTATTTTCC TTATTCACCA ATCAAACGAT CTAGAGTTAT 70751 .......... .......... .......... .......... .......... .......... 193 TATTAAGGTT TGGCCATAAC TTTATTCTAC CAAACTATGG TATGGTTCAA TTCAAGAATC 70811 .......... .......... .......... .......... .......... .......... 193 AATGAAAAAT GGGGACCAAA TTAATGTGTG GGCAAATAAT AGTATATAAT TGCTAACTGC 70871 .......... .......... .......... .......... .......... .......... 193 ATCTTGGGAG ATGATTCATT GTCCCTTTTG ACCCTACACT ATGCTTAATC TTGTCACACT 70931 .......... .......... .......... .......... .......... .......... 193 ATTATAAAGT TTTGAACAAT TGTTGTTTTT TTCTTTTTAC AATTCAAATA ATCTACCAAA 70991 .......... .......... .......... .......... .......... .......... 193 GATGATTAAA AATGATTTTA ATTCTGGAAA TTACATAAGG TGCCCCTTAA ATGTAGTGAG 71051 .......... .......... .......... .......... .......... .......... 193 CTTAATTTTT TTGTCTTTAG CAAAAAAATT ATTAAAGAAT AATCTTCCTT CCATTTTAAG 71111 .......... .......... .......... .......... .......... .......... 193 CAGAGTTAAA ATATATTTCA AAGAGAAATG CATATTTTTT GTGAGGAGAT TGTTTGTACT 71171 .......... .......... .......... .......... .......... .......... 193 ATATGAGAGG AGTACATTAT AATTTGTATT TAATTTTATT TTTTATTGAA TTAAAAAAGT 71231 .......... .......... .......... .......... .......... .......... 193 TTGATCGATA AGTGTTATAT CTTTTTAGAA TAACTTTATG ATAGTGTATT ATATTTTGTT 71291 .......... .......... .......... .......... .......... .......... 193 ATGAACTTAT GCTTATTTTG TAATATTGTG TAAATGATTG AGGCAATTTT GATAACTTAT 71351 .......... .......... .......... .......... .......... .......... 193 GAAAATTTGT CTTTATGAGC AAAAAATGCA ACTTAAAATT TCAAATTGAA TATCCAAACA 71411 .......... .......... .......... .......... .......... .......... 193 AAAACTTCAA TTTCATTACA TATTTCATCT TGTATACTAT GTATTATACA TTATATATTT 71471 .......... .......... .......... .......... .......... .......... 193 CATATAAATT ATACATATAT ATTTATTCTT ATTTGGTTTT ACATGTACTC TTTTTTAAAT 71531 || ||||||||| .......... .......... .......... .......... ........TC TTTTTTAAAC 205 TAATTTAGAC ACCTTCTTTT CAGTTCTAGT TAGGACCTAC AATTTGCAGT GATGTGGGTC 71591 ||||| || | | | ||| |||| | AAATTT-GAT AACAT-ATTT GAGTTTTT.. .......... .......... .......... 231 ACTTTGGCCA TTGCAATTGC TTTTAAAAAA AATAATGTTA AAATGAGTAG GGTTAGAGGA 71651 .......... .......... .......... .......... .......... .......... 231 AAAAAGAAAT TATAACATAT GCAATATGCA TAATACTTGC CTTGAGCATT AAATTTATAT 71711 .......... .......... .......... .......... .......... .......... 231 CATTCAATTA TTATTAGTTA ATATACATTC TTATCTCAAA TGACAAATTA GCTCATGGAA 71771 .......... .......... .......... .......... .......... .......... 231 ATATAATCTA CTCATGTTAT AGAACGTTTA AAAGATATAT AAGTCACTTT TGCCTAAATC 71831 .......... .......... .......... .......... .......... .......... 231 GATTACATTT AACAAATAGA ATGACACCTA TCTATACATG AGTAAAAAAT TAATCTAATC 71891 .......... .......... .......... .......... .......... .......... 231 CTAGAGAGGA CATAGCTTAG TGCTTTGTCC ATTTTTGGCC TTGAATTAAA GGGAATCTAA 71951 .......... .......... .......... .......... .......... .......... 231 AGCAACTCCA AGTGCAAATA TATCATAATC ATCAAGACTA AAAATACTAC TATTGCACTC 72011 .......... .......... .......... .......... .......... .......... 231 ACAATAACCC CTGCAATTAC ATGACCCATC CCATAATGAT CTTCTCAACT TATTAATTTT 72071 .......... .......... .......... .......... .......... .......... 231 TGTAATTGTC TCATTTACTT TAACTTTCAT TCCTATCTTC ACTGCTGGAG GTTTCACATC 72131 .......... .......... .......... .......... .......... .......... 231 TTCATTAATA TTCTTTGAAG TAGTCATGAA TATTGCCCAC TCCTCTATCT CCATTCTTGT 72191 .......... .......... .......... .......... .......... .......... 231 TGACTCAAAT ACTCTTCTCC ATGGAATTTC AACTTTTCCC AAGAGTAGTG AGCCACCAAT 72251 .......... .......... .......... .......... .......... .......... 231 ATTCTTCCTA AGAAGAGGAA CATATCTTCT TGATCGTAGC TCGAATATGA TTGTTCCTTG 72311 .......... .......... .......... .......... .......... .......... 231 CTTCATCATG TTAATGGAGT CTTGAGTTCC CATGCAATCC AATGAGAAAG ATTCATCCCA 72371 .......... .......... .......... .......... .......... .......... 231 AAACAAGTTT GATTTTGATG AGATCTCTTG AGTGTTTAGC TTAACTCTTT GGTTGTTGTT 72431 .......... .......... .......... .......... .......... .......... 231 TCCTGTTGGA AGATAACATC TAACAAACAA GTTGTTTTTT CCTAATGGAC TTATTTGTTC 72491 .......... .......... .......... .......... .......... .......... 231 TATGTTTCTT GCTATTATGA TTTGTATTTC ACAACTTATA GATGAAAAAT CATGAGTATT 72551 .......... .......... .......... .......... .......... .......... 231 CTCCATGAAA AAATTAATTA AATTAGAATC TTTGTTTGAT GGGGTTGTTT TATTTTCTTG 72611 .......... .......... .......... .......... .......... .......... 231 AGAGATGGTT GAGTTTGTTA TGGTGATGGG AAACATGTAG TTAGTGGGGG TATTTATAGT 72671 .......... .......... .......... .......... .......... .......... 231 TAAGAAAATA GTTATTTACT TTGGACAGTG GAAGGAAAGT GGCAAGTAGC TAGCTAACTA 72731 .......... .......... .......... .......... .......... .......... 231 GGATTATTTA TTTATTTATT TTTATAAAAT ACAAGTTAAA AAGAAAACCA CCCACCCAAT 72791 .......... .......... .......... .......... .......... .......... 231 GAGGATTAGT GCTAATAATC TATGAAAGGA TTTGATGAGA ATCCTATGAG GATCATATAA 72851 .......... .......... .......... .......... .......... .......... 231 AAGATTGCCT TTGTAAAAAA TTTACAAAAA ACTCTTCAAT ATCTTGAAAG GTTAAAAAAA 72911 .......... .......... .......... .......... .......... .......... 231 ATGTGTGAAA CAACTCTTGA GATAAGTATT AAGGTTGAAT GCATGTTGAT GTGTCAACTA 72971 .......... .......... .......... .......... .......... .......... 231 AGAGCTTAGT GGGTTGATTT GAATCTCCAA ACTGCTATTA AAATATGGCA TTGCATATAA 73031 .......... .......... .......... .......... .......... .......... 231 CATATGACTT TTATTCATTA TAATATAAAG TCATTTGGTC AATGAAAGAG TTCTATAAAT 73091 .......... .......... .......... .......... .......... .......... 231 CTTTTAATTG TATGGAATAG ATACATGATA AGATTGTCAA AAAGACTCTC TTTGTGACAC 73151 .......... .......... .......... .......... .......... .......... 231 ATTCTTTAAG AGTTCTAATG GGCTAAGAGA TACATTTCCT CATGTTAAAT TAGGGTCAAG 73211 .......... .......... .......... .......... .......... .......... 231 AGAGTATAAA AATGTTAGTC ACAACTACTT GTACTTGAAT AATATAGATT GGGTCAAGAT 73271 .......... .......... .......... .......... .......... .......... 231 CAGAGTATAA AATTTAAAAA CCTTAGGGAT AATGCACAAG TACTCCCTTA GTCTATGTCC 73331 .......... .......... .......... .......... .......... .......... 231 GAAATCTCAA AGACACACTT ATACTATACT AAGGTCCTAT TACCCTCCTG AACTTATTTT 73391 .......... .......... .......... .......... .......... .......... 231 TTTTCAAACT AGTGTCACGT AGGTCGAAAA GGATAAAAAA TTACTTATAA ATAAGTTAGG 73451 .......... .......... .......... .......... .......... .......... 231 GGGTAATAGG ACCTTAGTAT AATATAAATG TGTCTCTGAA ATTTAAAGCA TAGGTCAAAG 73511 || | .......... .......... .......... .......... .......... ...TTCTTAT 238 GGGTACTTTT GCATTTTCCC AAAAACTTAC AAGGAATAAA GCTTAATATT ATATTTTAAA 73571 || GG........ .......... .......... .......... .......... .......... 240 AGGCCCTTTT GATAGCCACA TATAGAGGCC ACCTATAGCA AAGAGTGGTA AGTCGAATAT 73631 .......... .......... .......... .......... .......... .......... 240 CTTTCACTAA AAAACTAATA GAGAAAATTA TACGAAGCAT ATAGGTTAAA AATTAGTTTT 73691 .......... .......... .......... .......... .......... .......... 240 CAAAATAAAT ATATACGTAA AATATCAAAC ACATTGTTTA AAAATTTTGA TTTTACCACT 73751 || | | | | | | .......... .......... .......... .......... .....TTAAA TGATGCAAGT 255 GCTATAATGC ACTTATAATT AAAAGCATTT ATATCTTTTT TTCTTAGTTA ACCCTAGTAA 73811 ||| | || | |||| | | | ||||||||| GCT-TCAT-C ACTT-TCA-T -AAAGCATTT .......... .......... .......... 280 TATAATAAAA TAGGATGCAA ATTATTTGCT AAGGCAATAT TGATGGATGG AAATTTTTGA 73871 .......... .......... .......... .......... .......... .......... 280 AAGTTTTGAC CAAACTAAGT CATTATTTAA ATTAATTCAT CAAAACATAC GTTTTAAATT 73931 .......... .......... .......... .......... .......... .......... 280 TTTTTTACAA AACTAGTATA AACATATTTT TGAGTAAGGT TTTAGGGTAT TTTTATTTTA 73991 .......... .......... .......... .......... .......... .......... 280 AAAATTCAAC TGACAAAAGC TGACGACGTT AAATGAGTAA ACATACTCTT GAATAACGTT 74051 .......... .......... .......... .......... .......... .......... 280 TTACACCTAA AACGTTACTC GGGAGTATGT TTTTGGAGCT GGTGTCTGCA TTTGGTTGTA 74111 .......... .......... .......... .......... .......... .......... 280 TCCTGCATCT GGCATGACTT ATTAGTTACA AATGTGTCCT GGCTGGTATA ATGAGGTAGA 74171 .......... .......... .......... .......... .......... .......... 280 AATGATGCTA GGAGGATCAA TATTTGGTTG CTAGTCTTTT CTTCGTAAAG AGGCAATTGC 74231 .......... .......... .......... .......... .......... .......... 280 TAAAAATTAC ACCTAAAACG TTATTTCGGA GTACATTTGA ATTTTTAAAA TAAAAATGCC 74291 .......... .......... .......... .......... .......... .......... 280 CTAAAAGGTT ACTCAAAATT ACGTTTATAC TAGTTCTGTA ATTAAAAACA TATTATTTTG 74351 .......... .......... .......... .......... .......... .......... 280 GTGATCTAGT TTAAATAGTA ACTTAGTTTG GTAAAAAATT CTCCAATATA TAGATAAATG 74411 .......... .......... .......... .......... .......... .......... 280 GATTAAATAA CTCTATATTG GATCTCCTCT TTTGAATATT CTTGGTGAGA TTATTCATAT 74471 .......... .......... .......... .......... .......... .......... 280 ATTCGCCTCC CTAAATTTAA TCTTGTATTC ATTATTTGTT CAAATTAAAG GATTAATTGC 74531 .......... .......... .......... .......... .......... .......... 280 AAATTTACTC CATATCTTTT CGGTAGGAAA GAAATGTTCT CTTGAAATAC GTTTTTTTAG 74591 .......... .......... .......... .......... .......... .......... 280 GAAAATAATT CAATGGATTT TTTATTTATG TTCTTCTGTC TATATGTACG CAAAATTAAA 74651 .......... .......... .......... .......... .......... .......... 280 GATATTATTT TAAAAGTATT TTTATATAAT TTAAATATAT ACTATGGGGG TAGGGCCTA- 74710 | | | .......... .......... .......... .......... .......... ...GAACAAT 287 CTTCAATGGA TGTGAAGATG AG 74732 || || |||| ||| | || ATTATATATT TGTGCAGAAG AG 309 hqPGS_C04HBa0077O05.1+_SGN-E263280+ (67452 67539,69283 69298,71520 71559) ******************************************************************************** EST sequence 8 +strand 827 n (File: SGN-E261435+) 1 GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 61 TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTCGAATT GATGTCTTAC 121 CCTCTTGGTG CGATAGAACT TGAATCTACC GTCTTACCCT CAAATATTTT TCATAATGAA 181 TGACATAAAT GAGTCTTTTT TAAACAAATT TGATAACATA TTTGAGTTTT TTTCTTATGG 241 TTAAATGATG CAAGTGCTTC ATCACTTTCA TAAAGCATTT GAACAATATT ATATATTTGT 301 GCAGAAGAGA GCTACTTCCT AATGGATATT ATATGCATCA AAAGATTCAC ATTACTCGAT 361 TTTCAAAGCA GCAAGAATGT ATCGAATGGA GCTACAAACT ATCAACACTT TAGTTAATGG 421 GGAAATTGAT TATGAAGATT TACAATCAAA GTTACTTGTC AACAAGAACA AACCAGCTAT 481 CATCAATATC AATATTGGAA CAACCTTCAA AGGAGCTATT GATGACCTCG ATTTCGTCAT 541 ACAAACACTT GAAAATTGTG GTTATTCAAA TGACAATTAT TATATCCATT GCGATGCAGC 601 ATTATGTGGG CTAATTCTCC CATTTATCAA ACATGCAAAA AAAATTACCT TCAAGAAACC 661 AATTGGAAGT ATTTCAATTT CAGGGCACAA ATTCTTGGGA TGTCCAATGT CTTGTGGCGT 721 TCAGATAACA AGGAGAAGTT ACGTTAGCAC CCTCTCAAAA ATTGAGTATA TTAATTCCGC 781 AGATGCTACA ATTTCTGGTA GTCGAAATGG ATTTACACCA ATATTCT Predicted gene structure (within gDNA segment 65808 to 74675): Exon 1 67452 67539 ( 88 n); cDNA 91 178 ( 88 n); score: 0.932 Intron 1 67540 69282 (1743 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0) Exon 2 69283 69298 ( 16 n); cDNA 179 193 ( 15 n); score: 0.750 Intron 2 69299 71519 (2221 n); Pd: 0.855 (s: 0), Pa: 0.000 (s: 0.73) Exon 3 71520 71559 ( 40 n); cDNA 194 231 ( 38 n); score: 0.725 Intron 3 71560 73504 (1945 n); Pd: 0.000 (s: 0.73), Pa: 0.362 (s: 0) Exon 4 73505 73513 ( 9 n); cDNA 232 240 ( 9 n); score: 0.556 Intron 4 73514 73736 ( 223 n); Pd: 0.172 (s: 0), Pa: 0.000 (s: 0.69) Exon 5 73737 73781 ( 45 n); cDNA 241 280 ( 40 n); score: 0.689 MATCH C04HBa0077O05.1+ SGN-E261435+ 0.932 198 0.239 C PGS_C04HBa0077O05.1+_SGN-E261435+ (67452 67539,69283 69298,71520 71559,73505 73513,73737 73781) Alignment (genomic DNA sequence = upper lines): GGTGCATCGA AACTCAAATT GATGTCTTAC CCTTTTGGTG CGATAGAACT TGAATCTATC 67511 |||||||| | ||||| |||| |||||||||| ||| |||||| |||||||||| |||||||| | GGTGCATCAA AACTCGAATT GATGTCTTAC CCTCTTGGTG CGATAGAACT TGAATCTACC 150 GTCTTATCCT CAAATATTTT TCATTATGGT GCATCCGGAC TTTAACCTGA TGTCTTACCC 67571 |||||| ||| |||||||||| |||| ||| GTCTTACCCT CAAATATTTT TCATAATG.. .......... .......... .......... 178 TTTTGGTGCG ATGAAACTTG AATTCATCGT CTTACCCTTA ACCAACGGTA TAATAAATCG 67631 .......... .......... .......... .......... .......... .......... 178 AAGTACAACA TGACTCATCC TTTGAGTCTT TCAAAACAAT CAAAATAACA TTCAAATTCA 67691 .......... .......... .......... .......... .......... .......... 178 TGCTATTAAA ATTTTATACC TTCTTCTATT TAAGAAATTT TGTATAGCAT GTCATATTCA 67751 .......... .......... .......... .......... .......... .......... 178 ACCAATAGTA GTATATGTCT TCGATTCCTG ATAATTGTTA GTGACTGAAT ACTATTTTAT 67811 .......... .......... .......... .......... .......... .......... 178 TCTAAATCAT AAAAATATTC TAGAAAATAC ATACCTGATT TTATGCATAT AATACCTTGA 67871 .......... .......... .......... .......... .......... .......... 178 TTCTTATAAC GAGATCAACC AAAAACATGA GTTAAAGAAA AAGTAAAACT CAATCTTAAT 67931 .......... .......... .......... .......... .......... .......... 178 TGGCTAGAGA CTCGTGCTGA TAACGTGTTA TAAAATCAAG CTCATGGCAA TATAAATATA 67991 .......... .......... .......... .......... .......... .......... 178 AAGAGATGAA GACAAGAGGA GTAAGATGGA AGATAAGACT TTCTTCTTAT TCAAGTGTAT 68051 .......... .......... .......... .......... .......... .......... 178 GCAAATCTCA TATGTATCTA TATTACAATA GTGAATGAAC AACCCTATTT ATAGAGTGAG 68111 .......... .......... .......... .......... .......... .......... 178 AAATCACTCC AAAGGTCACC ATATTAAGTA TCATAATAAA TAGATACATT CTTATCCAAA 68171 .......... .......... .......... .......... .......... .......... 178 AAGGTTCATG TAACCTAGTG AATATGAATG GTTGTTCATG TACCAACCTT ATGGACTATC 68231 .......... .......... .......... .......... .......... .......... 178 CACTCATTCA ATGAATTTAT AACAGGTATT ACATTATTAG TGCCTAACAT ATATTTTAGC 68291 .......... .......... .......... .......... .......... .......... 178 TAATTAGAAA AACTAAAGAA TTCCTATATT TTTTTCAATA ACCTTAATCC AATTCTCTAA 68351 .......... .......... .......... .......... .......... .......... 178 CTTGTGAACC TCTAACGTCA TTCATATTTT TTTCGATAGC TATGACTCTT CCCATAACAT 68411 .......... .......... .......... .......... .......... .......... 178 ATGTATTGTA TAATGACTCT TTCTATCCAA AAACATCTAA TTTTTTCATA TATTCTTCAA 68471 .......... .......... .......... .......... .......... .......... 178 AATGTGGGTG CACTATTTTT TTAATCCATA ACTCTAAAGT AATAATCATC TTCTCATCAA 68531 .......... .......... .......... .......... .......... .......... 178 TTTCCAATTG AAATGAGTAA GTTTTTTTTT TCCAAAAACT TATTTTTTCC AGCTGAAACA 68591 .......... .......... .......... .......... .......... .......... 178 AAAGATTGAG ATGAAAAATT ATTAGGAGCT CTATTATCAT GTCAACTAGT TCAACAATAA 68651 .......... .......... .......... .......... .......... .......... 178 GAATATTTAA GTGTTATCTC ACAAATATGT TTAATTATCG AAGAGTCTCA ATGAAATTAT 68711 .......... .......... .......... .......... .......... .......... 178 TGGCCTAATT CAAAATTCTA ATAAGAAACA TCAAATATGT ATACATGGTC ATTATTTTTA 68771 .......... .......... .......... .......... .......... .......... 178 ATTATGGATA GTATTTTTTC ACTCAAAAAT CTTGATCAAC ATCAATACAC TAAAGTATTA 68831 .......... .......... .......... .......... .......... .......... 178 TTGCAATAAG TGTTCTTACC AAACATCAAT ACACTCTAAG AAAATTATTA ATATAAAAAA 68891 .......... .......... .......... .......... .......... .......... 178 GTGACTTGTA AAGATTATGA AAATTTGAAA ATTATTAATA TAAAAAAATA CTTGTAAATA 68951 .......... .......... .......... .......... .......... .......... 178 TTACGAAAAT TTACTCGTTC AAGAGGAAAA AATTGATATT TGATTGAAAA AGAAAAGACG 69011 .......... .......... .......... .......... .......... .......... 178 AAAATTTGTA GTTGTGAGAG TTAAAGTTAT GCAAAGACCG AGGGAGACGA TACCGATATT 69071 .......... .......... .......... .......... .......... .......... 178 AATTTATAAC TTATTAAATA AGTCTGAATG TTGTTATGAT TCTCCTACGG GTCTTATCAG 69131 .......... .......... .......... .......... .......... .......... 178 TTCAGACCTT TTCAGATTCA TTAGGAGGTT TTTTGAAAGA AAAAAAACAA ACGGGCTTAA 69191 .......... .......... .......... .......... .......... .......... 178 TGGGTTGAAT TTAAATCATT CATATTCAGA CTTAAAAATC ACACACACTT AATTGGTTGA 69251 .......... .......... .......... .......... .......... .......... 178 ATCTGAATGA TTAAGATTCA GATTTCCATT AAGTGCAAAC AAATGAGGTC TAAATATTTT 69311 | || | | ||||||| .......... .......... .......... .AATG-ACAT AAATGAG... .......... 193 TTTTTTCATT TAATTTGAAA GTTATATAAT AGGTGTTGAT AATTAAATTG TATTTTAAAG 69371 .......... .......... .......... .......... .......... .......... 193 AAAAAAGAGT AGACATATTT AATAATATCT ATTTTAATTG TCTCATTAAA AATAATATAA 69431 .......... .......... .......... .......... .......... .......... 193 GAAAAATTAG GTGGGACAAA ATCTTGTAAA GGTAAAACAG TACAATTTGT ATGAACTTTC 69491 .......... .......... .......... .......... .......... .......... 193 CCTAAGGAAA AATTCGGCGT GACAAAACCT TTAAAGTTTT GAATTTTAAT CTTGTGCATT 69551 .......... .......... .......... .......... .......... .......... 193 ATCCTCTTCA AAATTGCACT TGATTAAGGT TTGATGAATA AATAAGTTAT ATTATTATTG 69611 .......... .......... .......... .......... .......... .......... 193 GAATAAATTT ATTGCACGTT TATATCAACA TTCTTTTAGA GATCACGTGA AGAGAAAAGT 69671 .......... .......... .......... .......... .......... .......... 193 TTTGGTGAAG TGTGTTTCGT CCTATTTCTT TTTATGAATT CTCACTTTAC TTGGATTATG 69731 .......... .......... .......... .......... .......... .......... 193 CATGTAACAT TATCTTCATA TAAGTCTAGA GTATTTTGTC ACATTTCAAA ATGCATTTTT 69791 .......... .......... .......... .......... .......... .......... 193 CTCAAATGAG ATGTACCAAC TCAACCACAT ATTTCGAATT GCTTCATGAA TAGCTATTTC 69851 .......... .......... .......... .......... .......... .......... 193 AACATGATTT GATGAAATAG TAATGATAGA CTATTGACTA TTTTGTAGAT CGCCAAGATA 69911 .......... .......... .......... .......... .......... .......... 193 TAACAGTATC CCCACATATG AACATGTAGC TTATTTGAGA TTGTAATTTG TGCGAATTAA 69971 .......... .......... .......... .......... .......... .......... 193 ATATATTTTG CATCAATGTA ACCAACAAGA TCGGTTTCTT TGATTCCATT CCAATGTCCC 70031 .......... .......... .......... .......... .......... .......... 193 TTGGTAGGAG TGATAACGCC AGTACTTTCA ACAAAATGAC ATGACTAGAA AATAAATAAA 70091 .......... .......... .......... .......... .......... .......... 193 ACCTTAGAGA CTGATAACAA TTGAACGAAA CACGCAATTT GCGGAATCAA TAAATTTGTT 70151 .......... .......... .......... .......... .......... .......... 193 TCATTAGTTA GATTGTAAAC ATAAATTAAA ATAAACTACA TCATATAAAA TCACAGTGTA 70211 .......... .......... .......... .......... .......... .......... 193 TGATTCTATC TTGTTTTAGA ATATAGGTCT CAATGTTTGG TGGTTGAATC TTCTTAAATT 70271 .......... .......... .......... .......... .......... .......... 193 TTTTTATTTT TCTTGACTAC TTCAAGAAGA AGATGGGGGT GAGGGTCTTG TTTTTTTAAT 70331 .......... .......... .......... .......... .......... .......... 193 AAAGAGAAAA ATCTCATTGG AAGGCCCTAT TTGGTAAATG CAATAAAATC ATATTAGATA 70391 .......... .......... .......... .......... .......... .......... 193 AAGTTGAAAT TTTATTTGGA CTATAAATTA ATGGGCCAAT TTTTGTATTT GAAAAATATA 70451 .......... .......... .......... .......... .......... .......... 193 AATCATAATA TGAAATTCTC AAATCAAGAT TTTTGAATAA CTTGAAAGTT CATATCATAA 70511 .......... .......... .......... .......... .......... .......... 193 TTTACAATCA TAAAATAAAA TCATATGTCC AAATATTGAT TTTATCTCAA GTCCAAACCC 70571 .......... .......... .......... .......... .......... .......... 193 TTGCTTAAGG TCTAAGTGTA CATTATAGTC CTATCAATTG TGTTCCTTTT TTATTTTCAT 70631 .......... .......... .......... .......... .......... .......... 193 ATAAGAATAT ATTACTTATT TAATTTACAT GAATCTCTCT CGATTTAATC ACATAAATAA 70691 .......... .......... .......... .......... .......... .......... 193 TTTAATTTAA TTTTTTTAAA ATTATTTTCC TTATTCACCA ATCAAACGAT CTAGAGTTAT 70751 .......... .......... .......... .......... .......... .......... 193 TATTAAGGTT TGGCCATAAC TTTATTCTAC CAAACTATGG TATGGTTCAA TTCAAGAATC 70811 .......... .......... .......... .......... .......... .......... 193 AATGAAAAAT GGGGACCAAA TTAATGTGTG GGCAAATAAT AGTATATAAT TGCTAACTGC 70871 .......... .......... .......... .......... .......... .......... 193 ATCTTGGGAG ATGATTCATT GTCCCTTTTG ACCCTACACT ATGCTTAATC TTGTCACACT 70931 .......... .......... .......... .......... .......... .......... 193 ATTATAAAGT TTTGAACAAT TGTTGTTTTT TTCTTTTTAC AATTCAAATA ATCTACCAAA 70991 .......... .......... .......... .......... .......... .......... 193 GATGATTAAA AATGATTTTA ATTCTGGAAA TTACATAAGG TGCCCCTTAA ATGTAGTGAG 71051 .......... .......... .......... .......... .......... .......... 193 CTTAATTTTT TTGTCTTTAG CAAAAAAATT ATTAAAGAAT AATCTTCCTT CCATTTTAAG 71111 .......... .......... .......... .......... .......... .......... 193 CAGAGTTAAA ATATATTTCA AAGAGAAATG CATATTTTTT GTGAGGAGAT TGTTTGTACT 71171 .......... .......... .......... .......... .......... .......... 193 ATATGAGAGG AGTACATTAT AATTTGTATT TAATTTTATT TTTTATTGAA TTAAAAAAGT 71231 .......... .......... .......... .......... .......... .......... 193 TTGATCGATA AGTGTTATAT CTTTTTAGAA TAACTTTATG ATAGTGTATT ATATTTTGTT 71291 .......... .......... .......... .......... .......... .......... 193 ATGAACTTAT GCTTATTTTG TAATATTGTG TAAATGATTG AGGCAATTTT GATAACTTAT 71351 .......... .......... .......... .......... .......... .......... 193 GAAAATTTGT CTTTATGAGC AAAAAATGCA ACTTAAAATT TCAAATTGAA TATCCAAACA 71411 .......... .......... .......... .......... .......... .......... 193 AAAACTTCAA TTTCATTACA TATTTCATCT TGTATACTAT GTATTATACA TTATATATTT 71471 .......... .......... .......... .......... .......... .......... 193 CATATAAATT ATACATATAT ATTTATTCTT ATTTGGTTTT ACATGTACTC TTTTTTAAAT 71531 || ||||||||| .......... .......... .......... .......... ........TC TTTTTTAAAC 205 TAATTTAGAC ACCTTCTTTT CAGTTCTAGT TAGGACCTAC AATTTGCAGT GATGTGGGTC 71591 ||||| || | | | ||| |||| | AAATTT-GAT AACAT-ATTT GAGTTTTT.. .......... .......... .......... 231 ACTTTGGCCA TTGCAATTGC TTTTAAAAAA AATAATGTTA AAATGAGTAG GGTTAGAGGA 71651 .......... .......... .......... .......... .......... .......... 231 AAAAAGAAAT TATAACATAT GCAATATGCA TAATACTTGC CTTGAGCATT AAATTTATAT 71711 .......... .......... .......... .......... .......... .......... 231 CATTCAATTA TTATTAGTTA ATATACATTC TTATCTCAAA TGACAAATTA GCTCATGGAA 71771 .......... .......... .......... .......... .......... .......... 231 ATATAATCTA CTCATGTTAT AGAACGTTTA AAAGATATAT AAGTCACTTT TGCCTAAATC 71831 .......... .......... .......... .......... .......... .......... 231 GATTACATTT AACAAATAGA ATGACACCTA TCTATACATG AGTAAAAAAT TAATCTAATC 71891 .......... .......... .......... .......... .......... .......... 231 CTAGAGAGGA CATAGCTTAG TGCTTTGTCC ATTTTTGGCC TTGAATTAAA GGGAATCTAA 71951 .......... .......... .......... .......... .......... .......... 231 AGCAACTCCA AGTGCAAATA TATCATAATC ATCAAGACTA AAAATACTAC TATTGCACTC 72011 .......... .......... .......... .......... .......... .......... 231 ACAATAACCC CTGCAATTAC ATGACCCATC CCATAATGAT CTTCTCAACT TATTAATTTT 72071 .......... .......... .......... .......... .......... .......... 231 TGTAATTGTC TCATTTACTT TAACTTTCAT TCCTATCTTC ACTGCTGGAG GTTTCACATC 72131 .......... .......... .......... .......... .......... .......... 231 TTCATTAATA TTCTTTGAAG TAGTCATGAA TATTGCCCAC TCCTCTATCT CCATTCTTGT 72191 .......... .......... .......... .......... .......... .......... 231 TGACTCAAAT ACTCTTCTCC ATGGAATTTC AACTTTTCCC AAGAGTAGTG AGCCACCAAT 72251 .......... .......... .......... .......... .......... .......... 231 ATTCTTCCTA AGAAGAGGAA CATATCTTCT TGATCGTAGC TCGAATATGA TTGTTCCTTG 72311 .......... .......... .......... .......... .......... .......... 231 CTTCATCATG TTAATGGAGT CTTGAGTTCC CATGCAATCC AATGAGAAAG ATTCATCCCA 72371 .......... .......... .......... .......... .......... .......... 231 AAACAAGTTT GATTTTGATG AGATCTCTTG AGTGTTTAGC TTAACTCTTT GGTTGTTGTT 72431 .......... .......... .......... .......... .......... .......... 231 TCCTGTTGGA AGATAACATC TAACAAACAA GTTGTTTTTT CCTAATGGAC TTATTTGTTC 72491 .......... .......... .......... .......... .......... .......... 231 TATGTTTCTT GCTATTATGA TTTGTATTTC ACAACTTATA GATGAAAAAT CATGAGTATT 72551 .......... .......... .......... .......... .......... .......... 231 CTCCATGAAA AAATTAATTA AATTAGAATC TTTGTTTGAT GGGGTTGTTT TATTTTCTTG 72611 .......... .......... .......... .......... .......... .......... 231 AGAGATGGTT GAGTTTGTTA TGGTGATGGG AAACATGTAG TTAGTGGGGG TATTTATAGT 72671 .......... .......... .......... .......... .......... .......... 231 TAAGAAAATA GTTATTTACT TTGGACAGTG GAAGGAAAGT GGCAAGTAGC TAGCTAACTA 72731 .......... .......... .......... .......... .......... .......... 231 GGATTATTTA TTTATTTATT TTTATAAAAT ACAAGTTAAA AAGAAAACCA CCCACCCAAT 72791 .......... .......... .......... .......... .......... .......... 231 GAGGATTAGT GCTAATAATC TATGAAAGGA TTTGATGAGA ATCCTATGAG GATCATATAA 72851 .......... .......... .......... .......... .......... .......... 231 AAGATTGCCT TTGTAAAAAA TTTACAAAAA ACTCTTCAAT ATCTTGAAAG GTTAAAAAAA 72911 .......... .......... .......... .......... .......... .......... 231 ATGTGTGAAA CAACTCTTGA GATAAGTATT AAGGTTGAAT GCATGTTGAT GTGTCAACTA 72971 .......... .......... .......... .......... .......... .......... 231 AGAGCTTAGT GGGTTGATTT GAATCTCCAA ACTGCTATTA AAATATGGCA TTGCATATAA 73031 .......... .......... .......... .......... .......... .......... 231 CATATGACTT TTATTCATTA TAATATAAAG TCATTTGGTC AATGAAAGAG TTCTATAAAT 73091 .......... .......... .......... .......... .......... .......... 231 CTTTTAATTG TATGGAATAG ATACATGATA AGATTGTCAA AAAGACTCTC TTTGTGACAC 73151 .......... .......... .......... .......... .......... .......... 231 ATTCTTTAAG AGTTCTAATG GGCTAAGAGA TACATTTCCT CATGTTAAAT TAGGGTCAAG 73211 .......... .......... .......... .......... .......... .......... 231 AGAGTATAAA AATGTTAGTC ACAACTACTT GTACTTGAAT AATATAGATT GGGTCAAGAT 73271 .......... .......... .......... .......... .......... .......... 231 CAGAGTATAA AATTTAAAAA CCTTAGGGAT AATGCACAAG TACTCCCTTA GTCTATGTCC 73331 .......... .......... .......... .......... .......... .......... 231 GAAATCTCAA AGACACACTT ATACTATACT AAGGTCCTAT TACCCTCCTG AACTTATTTT 73391 .......... .......... .......... .......... .......... .......... 231 TTTTCAAACT AGTGTCACGT AGGTCGAAAA GGATAAAAAA TTACTTATAA ATAAGTTAGG 73451 .......... .......... .......... .......... .......... .......... 231 GGGTAATAGG ACCTTAGTAT AATATAAATG TGTCTCTGAA ATTTAAAGCA TAGGTCAAAG 73511 || | .......... .......... .......... .......... .......... ...TTCTTAT 238 GGGTACTTTT GCATTTTCCC AAAAACTTAC AAGGAATAAA GCTTAATATT ATATTTTAAA 73571 || GG........ .......... .......... .......... .......... .......... 240 AGGCCCTTTT GATAGCCACA TATAGAGGCC ACCTATAGCA AAGAGTGGTA AGTCGAATAT 73631 .......... .......... .......... .......... .......... .......... 240 CTTTCACTAA AAAACTAATA GAGAAAATTA TACGAAGCAT ATAGGTTAAA AATTAGTTTT 73691 .......... .......... .......... .......... .......... .......... 240 CAAAATAAAT ATATACGTAA AATATCAAAC ACATTGTTTA AAAATTTTGA TTTTACCACT 73751 || | | | | | | .......... .......... .......... .......... .....TTAAA TGATGCAAGT 255 GCTATAATGC ACTTATAATT AAAAGCATTT 73781 ||| | || | |||| | | | ||||||||| GCT-TCAT-C ACTT-TCA-T -AAAGCATTT 280 hqPGS_C04HBa0077O05.1+_SGN-E261435+ (67452 67539,69283 69298,71520 71559) ******************************************************************************** EST sequence 134 +strand 458 n (File: SGN-E250041+) 1 TTGAACCCAA TACCTTATCA TTATGGTGCA TCAAAACTCG AATTGATGTC TTACCCTGTT 61 GGTGCGATAG AACTTGAATC TACCGTCTTA CCCTCAAATA TTTTTCATAA TGAATGACAT 121 AAATGAGTCT TTTTTAAACA AATTTGATAA CATATTTGAG TTTTTTTCTT ATGGTTAAAT 181 GATGCAAGTG CTTCATCACT TTCATAAAGC ATTTGAACAA TATTATATAT TTGTGCAGAA 241 GAGAGCTACT TCCTAATGGA TATTATATGC ATCAAAAGAT TCACATTACT CGATTTTCAA 301 AGCAGCAAGA ATGTATCGAA TGGAGCTACA AACTATCAAC ACTTTAGTTA ATGGGGAAAT 361 TGATTATGAA GATTTACAAT CAAAGTTACT TGTCAACAAG AACAAACCAG CTATCATCAA 421 TATCAATATT GGAACAACCT TCAAAGGAGC TATTGATG Predicted gene structure (within gDNA segment 66468 to 72245): Exon 1 67452 67539 ( 88 n); cDNA 25 112 ( 88 n); score: 0.932 Intron 1 67540 69282 (1743 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0) Exon 2 69283 69298 ( 16 n); cDNA 113 127 ( 15 n); score: 0.750 Intron 2 69299 71519 (2221 n); Pd: 0.855 (s: 0), Pa: 0.000 (s: 0) Exon 3 71520 71556 ( 37 n); cDNA 128 162 ( 35 n); score: 0.757 MATCH C04HBa0077O05.1+ SGN-E250041+ 0.932 141 0.308 C PGS_C04HBa0077O05.1+_SGN-E250041+ (67452 67539,69283 69298,71520 71556) Alignment (genomic DNA sequence = upper lines): GGTGCATCGA AACTCAAATT GATGTCTTAC CCTTTTGGTG CGATAGAACT TGAATCTATC 67511 |||||||| | ||||| |||| |||||||||| ||| |||||| |||||||||| |||||||| | GGTGCATCAA AACTCGAATT GATGTCTTAC CCTGTTGGTG CGATAGAACT TGAATCTACC 84 GTCTTATCCT CAAATATTTT TCATTATGGT GCATCCGGAC TTTAACCTGA TGTCTTACCC 67571 |||||| ||| |||||||||| |||| ||| GTCTTACCCT CAAATATTTT TCATAATG.. .......... .......... .......... 112 TTTTGGTGCG ATGAAACTTG AATTCATCGT CTTACCCTTA ACCAACGGTA TAATAAATCG 67631 .......... .......... .......... .......... .......... .......... 112 AAGTACAACA TGACTCATCC TTTGAGTCTT TCAAAACAAT CAAAATAACA TTCAAATTCA 67691 .......... .......... .......... .......... .......... .......... 112 TGCTATTAAA ATTTTATACC TTCTTCTATT TAAGAAATTT TGTATAGCAT GTCATATTCA 67751 .......... .......... .......... .......... .......... .......... 112 ACCAATAGTA GTATATGTCT TCGATTCCTG ATAATTGTTA GTGACTGAAT ACTATTTTAT 67811 .......... .......... .......... .......... .......... .......... 112 TCTAAATCAT AAAAATATTC TAGAAAATAC ATACCTGATT TTATGCATAT AATACCTTGA 67871 .......... .......... .......... .......... .......... .......... 112 TTCTTATAAC GAGATCAACC AAAAACATGA GTTAAAGAAA AAGTAAAACT CAATCTTAAT 67931 .......... .......... .......... .......... .......... .......... 112 TGGCTAGAGA CTCGTGCTGA TAACGTGTTA TAAAATCAAG CTCATGGCAA TATAAATATA 67991 .......... .......... .......... .......... .......... .......... 112 AAGAGATGAA GACAAGAGGA GTAAGATGGA AGATAAGACT TTCTTCTTAT TCAAGTGTAT 68051 .......... .......... .......... .......... .......... .......... 112 GCAAATCTCA TATGTATCTA TATTACAATA GTGAATGAAC AACCCTATTT ATAGAGTGAG 68111 .......... .......... .......... .......... .......... .......... 112 AAATCACTCC AAAGGTCACC ATATTAAGTA TCATAATAAA TAGATACATT CTTATCCAAA 68171 .......... .......... .......... .......... .......... .......... 112 AAGGTTCATG TAACCTAGTG AATATGAATG GTTGTTCATG TACCAACCTT ATGGACTATC 68231 .......... .......... .......... .......... .......... .......... 112 CACTCATTCA ATGAATTTAT AACAGGTATT ACATTATTAG TGCCTAACAT ATATTTTAGC 68291 .......... .......... .......... .......... .......... .......... 112 TAATTAGAAA AACTAAAGAA TTCCTATATT TTTTTCAATA ACCTTAATCC AATTCTCTAA 68351 .......... .......... .......... .......... .......... .......... 112 CTTGTGAACC TCTAACGTCA TTCATATTTT TTTCGATAGC TATGACTCTT CCCATAACAT 68411 .......... .......... .......... .......... .......... .......... 112 ATGTATTGTA TAATGACTCT TTCTATCCAA AAACATCTAA TTTTTTCATA TATTCTTCAA 68471 .......... .......... .......... .......... .......... .......... 112 AATGTGGGTG CACTATTTTT TTAATCCATA ACTCTAAAGT AATAATCATC TTCTCATCAA 68531 .......... .......... .......... .......... .......... .......... 112 TTTCCAATTG AAATGAGTAA GTTTTTTTTT TCCAAAAACT TATTTTTTCC AGCTGAAACA 68591 .......... .......... .......... .......... .......... .......... 112 AAAGATTGAG ATGAAAAATT ATTAGGAGCT CTATTATCAT GTCAACTAGT TCAACAATAA 68651 .......... .......... .......... .......... .......... .......... 112 GAATATTTAA GTGTTATCTC ACAAATATGT TTAATTATCG AAGAGTCTCA ATGAAATTAT 68711 .......... .......... .......... .......... .......... .......... 112 TGGCCTAATT CAAAATTCTA ATAAGAAACA TCAAATATGT ATACATGGTC ATTATTTTTA 68771 .......... .......... .......... .......... .......... .......... 112 ATTATGGATA GTATTTTTTC ACTCAAAAAT CTTGATCAAC ATCAATACAC TAAAGTATTA 68831 .......... .......... .......... .......... .......... .......... 112 TTGCAATAAG TGTTCTTACC AAACATCAAT ACACTCTAAG AAAATTATTA ATATAAAAAA 68891 .......... .......... .......... .......... .......... .......... 112 GTGACTTGTA AAGATTATGA AAATTTGAAA ATTATTAATA TAAAAAAATA CTTGTAAATA 68951 .......... .......... .......... .......... .......... .......... 112 TTACGAAAAT TTACTCGTTC AAGAGGAAAA AATTGATATT TGATTGAAAA AGAAAAGACG 69011 .......... .......... .......... .......... .......... .......... 112 AAAATTTGTA GTTGTGAGAG TTAAAGTTAT GCAAAGACCG AGGGAGACGA TACCGATATT 69071 .......... .......... .......... .......... .......... .......... 112 AATTTATAAC TTATTAAATA AGTCTGAATG TTGTTATGAT TCTCCTACGG GTCTTATCAG 69131 .......... .......... .......... .......... .......... .......... 112 TTCAGACCTT TTCAGATTCA TTAGGAGGTT TTTTGAAAGA AAAAAAACAA ACGGGCTTAA 69191 .......... .......... .......... .......... .......... .......... 112 TGGGTTGAAT TTAAATCATT CATATTCAGA CTTAAAAATC ACACACACTT AATTGGTTGA 69251 .......... .......... .......... .......... .......... .......... 112 ATCTGAATGA TTAAGATTCA GATTTCCATT AAGTGCAAAC AAATGAGGTC TAAATATTTT 69311 | || | | ||||||| .......... .......... .......... .AATG-ACAT AAATGAG... .......... 127 TTTTTTCATT TAATTTGAAA GTTATATAAT AGGTGTTGAT AATTAAATTG TATTTTAAAG 69371 .......... .......... .......... .......... .......... .......... 127 AAAAAAGAGT AGACATATTT AATAATATCT ATTTTAATTG TCTCATTAAA AATAATATAA 69431 .......... .......... .......... .......... .......... .......... 127 GAAAAATTAG GTGGGACAAA ATCTTGTAAA GGTAAAACAG TACAATTTGT ATGAACTTTC 69491 .......... .......... .......... .......... .......... .......... 127 CCTAAGGAAA AATTCGGCGT GACAAAACCT TTAAAGTTTT GAATTTTAAT CTTGTGCATT 69551 .......... .......... .......... .......... .......... .......... 127 ATCCTCTTCA AAATTGCACT TGATTAAGGT TTGATGAATA AATAAGTTAT ATTATTATTG 69611 .......... .......... .......... .......... .......... .......... 127 GAATAAATTT ATTGCACGTT TATATCAACA TTCTTTTAGA GATCACGTGA AGAGAAAAGT 69671 .......... .......... .......... .......... .......... .......... 127 TTTGGTGAAG TGTGTTTCGT CCTATTTCTT TTTATGAATT CTCACTTTAC TTGGATTATG 69731 .......... .......... .......... .......... .......... .......... 127 CATGTAACAT TATCTTCATA TAAGTCTAGA GTATTTTGTC ACATTTCAAA ATGCATTTTT 69791 .......... .......... .......... .......... .......... .......... 127 CTCAAATGAG ATGTACCAAC TCAACCACAT ATTTCGAATT GCTTCATGAA TAGCTATTTC 69851 .......... .......... .......... .......... .......... .......... 127 AACATGATTT GATGAAATAG TAATGATAGA CTATTGACTA TTTTGTAGAT CGCCAAGATA 69911 .......... .......... .......... .......... .......... .......... 127 TAACAGTATC CCCACATATG AACATGTAGC TTATTTGAGA TTGTAATTTG TGCGAATTAA 69971 .......... .......... .......... .......... .......... .......... 127 ATATATTTTG CATCAATGTA ACCAACAAGA TCGGTTTCTT TGATTCCATT CCAATGTCCC 70031 .......... .......... .......... .......... .......... .......... 127 TTGGTAGGAG TGATAACGCC AGTACTTTCA ACAAAATGAC ATGACTAGAA AATAAATAAA 70091 .......... .......... .......... .......... .......... .......... 127 ACCTTAGAGA CTGATAACAA TTGAACGAAA CACGCAATTT GCGGAATCAA TAAATTTGTT 70151 .......... .......... .......... .......... .......... .......... 127 TCATTAGTTA GATTGTAAAC ATAAATTAAA ATAAACTACA TCATATAAAA TCACAGTGTA 70211 .......... .......... .......... .......... .......... .......... 127 TGATTCTATC TTGTTTTAGA ATATAGGTCT CAATGTTTGG TGGTTGAATC TTCTTAAATT 70271 .......... .......... .......... .......... .......... .......... 127 TTTTTATTTT TCTTGACTAC TTCAAGAAGA AGATGGGGGT GAGGGTCTTG TTTTTTTAAT 70331 .......... .......... .......... .......... .......... .......... 127 AAAGAGAAAA ATCTCATTGG AAGGCCCTAT TTGGTAAATG CAATAAAATC ATATTAGATA 70391 .......... .......... .......... .......... .......... .......... 127 AAGTTGAAAT TTTATTTGGA CTATAAATTA ATGGGCCAAT TTTTGTATTT GAAAAATATA 70451 .......... .......... .......... .......... .......... .......... 127 AATCATAATA TGAAATTCTC AAATCAAGAT TTTTGAATAA CTTGAAAGTT CATATCATAA 70511 .......... .......... .......... .......... .......... .......... 127 TTTACAATCA TAAAATAAAA TCATATGTCC AAATATTGAT TTTATCTCAA GTCCAAACCC 70571 .......... .......... .......... .......... .......... .......... 127 TTGCTTAAGG TCTAAGTGTA CATTATAGTC CTATCAATTG TGTTCCTTTT TTATTTTCAT 70631 .......... .......... .......... .......... .......... .......... 127 ATAAGAATAT ATTACTTATT TAATTTACAT GAATCTCTCT CGATTTAATC ACATAAATAA 70691 .......... .......... .......... .......... .......... .......... 127 TTTAATTTAA TTTTTTTAAA ATTATTTTCC TTATTCACCA ATCAAACGAT CTAGAGTTAT 70751 .......... .......... .......... .......... .......... .......... 127 TATTAAGGTT TGGCCATAAC TTTATTCTAC CAAACTATGG TATGGTTCAA TTCAAGAATC 70811 .......... .......... .......... .......... .......... .......... 127 AATGAAAAAT GGGGACCAAA TTAATGTGTG GGCAAATAAT AGTATATAAT TGCTAACTGC 70871 .......... .......... .......... .......... .......... .......... 127 ATCTTGGGAG ATGATTCATT GTCCCTTTTG ACCCTACACT ATGCTTAATC TTGTCACACT 70931 .......... .......... .......... .......... .......... .......... 127 ATTATAAAGT TTTGAACAAT TGTTGTTTTT TTCTTTTTAC AATTCAAATA ATCTACCAAA 70991 .......... .......... .......... .......... .......... .......... 127 GATGATTAAA AATGATTTTA ATTCTGGAAA TTACATAAGG TGCCCCTTAA ATGTAGTGAG 71051 .......... .......... .......... .......... .......... .......... 127 CTTAATTTTT TTGTCTTTAG CAAAAAAATT ATTAAAGAAT AATCTTCCTT CCATTTTAAG 71111 .......... .......... .......... .......... .......... .......... 127 CAGAGTTAAA ATATATTTCA AAGAGAAATG CATATTTTTT GTGAGGAGAT TGTTTGTACT 71171 .......... .......... .......... .......... .......... .......... 127 ATATGAGAGG AGTACATTAT AATTTGTATT TAATTTTATT TTTTATTGAA TTAAAAAAGT 71231 .......... .......... .......... .......... .......... .......... 127 TTGATCGATA AGTGTTATAT CTTTTTAGAA TAACTTTATG ATAGTGTATT ATATTTTGTT 71291 .......... .......... .......... .......... .......... .......... 127 ATGAACTTAT GCTTATTTTG TAATATTGTG TAAATGATTG AGGCAATTTT GATAACTTAT 71351 .......... .......... .......... .......... .......... .......... 127 GAAAATTTGT CTTTATGAGC AAAAAATGCA ACTTAAAATT TCAAATTGAA TATCCAAACA 71411 .......... .......... .......... .......... .......... .......... 127 AAAACTTCAA TTTCATTACA TATTTCATCT TGTATACTAT GTATTATACA TTATATATTT 71471 .......... .......... .......... .......... .......... .......... 127 CATATAAATT ATACATATAT ATTTATTCTT ATTTGGTTTT ACATGTACTC TTTTTTAAAT 71531 || ||||||||| .......... .......... .......... .......... ........TC TTTTTTAAAC 139 TAATTTAGAC ACCTTCTTTT CAGTT 71556 ||||| || | | | ||| |||| AAATTT-GAT AACAT-ATTT GAGTT 162 hqPGS_C04HBa0077O05.1+_SGN-E250041+ (67452 67539,69283 69298,71520 71556) ******************************************************************************** EST sequence 138 +strand 605 n (File: SGN-E259955+) 1 GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 61 TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTCGAATT GATGTCTTAC 121 CCTCTTGGTG CGATAGAACT TGAATCTACC GTCTTACCCT CAAATATTTT TCATAATGAA 181 TGACATAAAT GAGTCTTTTT TAAACAAATT TGATAACATA TTTGAGTTTT TTTCTTATGG 241 TTAAATGATG CAAGTGCTTC ATCACTTTCA TAAAGCATTT GAACAATATT ATATATTTGT 301 GCAGAAGAGA GCTACTTCCT AATGGATATT ATATGCATCA AAAGATTCAC ATTACTCGAT 361 TTTCAAAGCA GCAAGAATGT ATCGAATGGA GCTACAAACT ATCAACACTT TAGTTAATGG 421 GGAAATTGAT TATGAAGATT TACAATCAAA GTTACTTGTC AACAAGAACA AACCAGCTAT 481 CATCAATATC AATATTGGAA CAACCTTCAA AGGAGCTATT GATGACCTCG ATTTCGTCAT 541 ACAAACACTT GAAAATTGTG GTTATTCAAA TGACAATTAT TATATCCATT GCGATGCAGC 601 ATTAT Predicted gene structure (within gDNA segment 65808 to 72455): Exon 1 67452 67539 ( 88 n); cDNA 91 178 ( 88 n); score: 0.932 Intron 1 67540 69282 (1743 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0) Exon 2 69283 69298 ( 16 n); cDNA 179 193 ( 15 n); score: 0.750 Intron 2 69299 71519 (2221 n); Pd: 0.855 (s: 0), Pa: 0.000 (s: 0) Exon 3 71520 71556 ( 37 n); cDNA 194 228 ( 35 n); score: 0.757 MATCH C04HBa0077O05.1+ SGN-E259955+ 0.932 141 0.233 C PGS_C04HBa0077O05.1+_SGN-E259955+ (67452 67539,69283 69298,71520 71556) Alignment (genomic DNA sequence = upper lines): GGTGCATCGA AACTCAAATT GATGTCTTAC CCTTTTGGTG CGATAGAACT TGAATCTATC 67511 |||||||| | ||||| |||| |||||||||| ||| |||||| |||||||||| |||||||| | GGTGCATCAA AACTCGAATT GATGTCTTAC CCTCTTGGTG CGATAGAACT TGAATCTACC 150 GTCTTATCCT CAAATATTTT TCATTATGGT GCATCCGGAC TTTAACCTGA TGTCTTACCC 67571 |||||| ||| |||||||||| |||| ||| GTCTTACCCT CAAATATTTT TCATAATG.. .......... .......... .......... 178 TTTTGGTGCG ATGAAACTTG AATTCATCGT CTTACCCTTA ACCAACGGTA TAATAAATCG 67631 .......... .......... .......... .......... .......... .......... 178 AAGTACAACA TGACTCATCC TTTGAGTCTT TCAAAACAAT CAAAATAACA TTCAAATTCA 67691 .......... .......... .......... .......... .......... .......... 178 TGCTATTAAA ATTTTATACC TTCTTCTATT TAAGAAATTT TGTATAGCAT GTCATATTCA 67751 .......... .......... .......... .......... .......... .......... 178 ACCAATAGTA GTATATGTCT TCGATTCCTG ATAATTGTTA GTGACTGAAT ACTATTTTAT 67811 .......... .......... .......... .......... .......... .......... 178 TCTAAATCAT AAAAATATTC TAGAAAATAC ATACCTGATT TTATGCATAT AATACCTTGA 67871 .......... .......... .......... .......... .......... .......... 178 TTCTTATAAC GAGATCAACC AAAAACATGA GTTAAAGAAA AAGTAAAACT CAATCTTAAT 67931 .......... .......... .......... .......... .......... .......... 178 TGGCTAGAGA CTCGTGCTGA TAACGTGTTA TAAAATCAAG CTCATGGCAA TATAAATATA 67991 .......... .......... .......... .......... .......... .......... 178 AAGAGATGAA GACAAGAGGA GTAAGATGGA AGATAAGACT TTCTTCTTAT TCAAGTGTAT 68051 .......... .......... .......... .......... .......... .......... 178 GCAAATCTCA TATGTATCTA TATTACAATA GTGAATGAAC AACCCTATTT ATAGAGTGAG 68111 .......... .......... .......... .......... .......... .......... 178 AAATCACTCC AAAGGTCACC ATATTAAGTA TCATAATAAA TAGATACATT CTTATCCAAA 68171 .......... .......... .......... .......... .......... .......... 178 AAGGTTCATG TAACCTAGTG AATATGAATG GTTGTTCATG TACCAACCTT ATGGACTATC 68231 .......... .......... .......... .......... .......... .......... 178 CACTCATTCA ATGAATTTAT AACAGGTATT ACATTATTAG TGCCTAACAT ATATTTTAGC 68291 .......... .......... .......... .......... .......... .......... 178 TAATTAGAAA AACTAAAGAA TTCCTATATT TTTTTCAATA ACCTTAATCC AATTCTCTAA 68351 .......... .......... .......... .......... .......... .......... 178 CTTGTGAACC TCTAACGTCA TTCATATTTT TTTCGATAGC TATGACTCTT CCCATAACAT 68411 .......... .......... .......... .......... .......... .......... 178 ATGTATTGTA TAATGACTCT TTCTATCCAA AAACATCTAA TTTTTTCATA TATTCTTCAA 68471 .......... .......... .......... .......... .......... .......... 178 AATGTGGGTG CACTATTTTT TTAATCCATA ACTCTAAAGT AATAATCATC TTCTCATCAA 68531 .......... .......... .......... .......... .......... .......... 178 TTTCCAATTG AAATGAGTAA GTTTTTTTTT TCCAAAAACT TATTTTTTCC AGCTGAAACA 68591 .......... .......... .......... .......... .......... .......... 178 AAAGATTGAG ATGAAAAATT ATTAGGAGCT CTATTATCAT GTCAACTAGT TCAACAATAA 68651 .......... .......... .......... .......... .......... .......... 178 GAATATTTAA GTGTTATCTC ACAAATATGT TTAATTATCG AAGAGTCTCA ATGAAATTAT 68711 .......... .......... .......... .......... .......... .......... 178 TGGCCTAATT CAAAATTCTA ATAAGAAACA TCAAATATGT ATACATGGTC ATTATTTTTA 68771 .......... .......... .......... .......... .......... .......... 178 ATTATGGATA GTATTTTTTC ACTCAAAAAT CTTGATCAAC ATCAATACAC TAAAGTATTA 68831 .......... .......... .......... .......... .......... .......... 178 TTGCAATAAG TGTTCTTACC AAACATCAAT ACACTCTAAG AAAATTATTA ATATAAAAAA 68891 .......... .......... .......... .......... .......... .......... 178 GTGACTTGTA AAGATTATGA AAATTTGAAA ATTATTAATA TAAAAAAATA CTTGTAAATA 68951 .......... .......... .......... .......... .......... .......... 178 TTACGAAAAT TTACTCGTTC AAGAGGAAAA AATTGATATT TGATTGAAAA AGAAAAGACG 69011 .......... .......... .......... .......... .......... .......... 178 AAAATTTGTA GTTGTGAGAG TTAAAGTTAT GCAAAGACCG AGGGAGACGA TACCGATATT 69071 .......... .......... .......... .......... .......... .......... 178 AATTTATAAC TTATTAAATA AGTCTGAATG TTGTTATGAT TCTCCTACGG GTCTTATCAG 69131 .......... .......... .......... .......... .......... .......... 178 TTCAGACCTT TTCAGATTCA TTAGGAGGTT TTTTGAAAGA AAAAAAACAA ACGGGCTTAA 69191 .......... .......... .......... .......... .......... .......... 178 TGGGTTGAAT TTAAATCATT CATATTCAGA CTTAAAAATC ACACACACTT AATTGGTTGA 69251 .......... .......... .......... .......... .......... .......... 178 ATCTGAATGA TTAAGATTCA GATTTCCATT AAGTGCAAAC AAATGAGGTC TAAATATTTT 69311 | || | | ||||||| .......... .......... .......... .AATG-ACAT AAATGAG... .......... 193 TTTTTTCATT TAATTTGAAA GTTATATAAT AGGTGTTGAT AATTAAATTG TATTTTAAAG 69371 .......... .......... .......... .......... .......... .......... 193 AAAAAAGAGT AGACATATTT AATAATATCT ATTTTAATTG TCTCATTAAA AATAATATAA 69431 .......... .......... .......... .......... .......... .......... 193 GAAAAATTAG GTGGGACAAA ATCTTGTAAA GGTAAAACAG TACAATTTGT ATGAACTTTC 69491 .......... .......... .......... .......... .......... .......... 193 CCTAAGGAAA AATTCGGCGT GACAAAACCT TTAAAGTTTT GAATTTTAAT CTTGTGCATT 69551 .......... .......... .......... .......... .......... .......... 193 ATCCTCTTCA AAATTGCACT TGATTAAGGT TTGATGAATA AATAAGTTAT ATTATTATTG 69611 .......... .......... .......... .......... .......... .......... 193 GAATAAATTT ATTGCACGTT TATATCAACA TTCTTTTAGA GATCACGTGA AGAGAAAAGT 69671 .......... .......... .......... .......... .......... .......... 193 TTTGGTGAAG TGTGTTTCGT CCTATTTCTT TTTATGAATT CTCACTTTAC TTGGATTATG 69731 .......... .......... .......... .......... .......... .......... 193 CATGTAACAT TATCTTCATA TAAGTCTAGA GTATTTTGTC ACATTTCAAA ATGCATTTTT 69791 .......... .......... .......... .......... .......... .......... 193 CTCAAATGAG ATGTACCAAC TCAACCACAT ATTTCGAATT GCTTCATGAA TAGCTATTTC 69851 .......... .......... .......... .......... .......... .......... 193 AACATGATTT GATGAAATAG TAATGATAGA CTATTGACTA TTTTGTAGAT CGCCAAGATA 69911 .......... .......... .......... .......... .......... .......... 193 TAACAGTATC CCCACATATG AACATGTAGC TTATTTGAGA TTGTAATTTG TGCGAATTAA 69971 .......... .......... .......... .......... .......... .......... 193 ATATATTTTG CATCAATGTA ACCAACAAGA TCGGTTTCTT TGATTCCATT CCAATGTCCC 70031 .......... .......... .......... .......... .......... .......... 193 TTGGTAGGAG TGATAACGCC AGTACTTTCA ACAAAATGAC ATGACTAGAA AATAAATAAA 70091 .......... .......... .......... .......... .......... .......... 193 ACCTTAGAGA CTGATAACAA TTGAACGAAA CACGCAATTT GCGGAATCAA TAAATTTGTT 70151 .......... .......... .......... .......... .......... .......... 193 TCATTAGTTA GATTGTAAAC ATAAATTAAA ATAAACTACA TCATATAAAA TCACAGTGTA 70211 .......... .......... .......... .......... .......... .......... 193 TGATTCTATC TTGTTTTAGA ATATAGGTCT CAATGTTTGG TGGTTGAATC TTCTTAAATT 70271 .......... .......... .......... .......... .......... .......... 193 TTTTTATTTT TCTTGACTAC TTCAAGAAGA AGATGGGGGT GAGGGTCTTG TTTTTTTAAT 70331 .......... .......... .......... .......... .......... .......... 193 AAAGAGAAAA ATCTCATTGG AAGGCCCTAT TTGGTAAATG CAATAAAATC ATATTAGATA 70391 .......... .......... .......... .......... .......... .......... 193 AAGTTGAAAT TTTATTTGGA CTATAAATTA ATGGGCCAAT TTTTGTATTT GAAAAATATA 70451 .......... .......... .......... .......... .......... .......... 193 AATCATAATA TGAAATTCTC AAATCAAGAT TTTTGAATAA CTTGAAAGTT CATATCATAA 70511 .......... .......... .......... .......... .......... .......... 193 TTTACAATCA TAAAATAAAA TCATATGTCC AAATATTGAT TTTATCTCAA GTCCAAACCC 70571 .......... .......... .......... .......... .......... .......... 193 TTGCTTAAGG TCTAAGTGTA CATTATAGTC CTATCAATTG TGTTCCTTTT TTATTTTCAT 70631 .......... .......... .......... .......... .......... .......... 193 ATAAGAATAT ATTACTTATT TAATTTACAT GAATCTCTCT CGATTTAATC ACATAAATAA 70691 .......... .......... .......... .......... .......... .......... 193 TTTAATTTAA TTTTTTTAAA ATTATTTTCC TTATTCACCA ATCAAACGAT CTAGAGTTAT 70751 .......... .......... .......... .......... .......... .......... 193 TATTAAGGTT TGGCCATAAC TTTATTCTAC CAAACTATGG TATGGTTCAA TTCAAGAATC 70811 .......... .......... .......... .......... .......... .......... 193 AATGAAAAAT GGGGACCAAA TTAATGTGTG GGCAAATAAT AGTATATAAT TGCTAACTGC 70871 .......... .......... .......... .......... .......... .......... 193 ATCTTGGGAG ATGATTCATT GTCCCTTTTG ACCCTACACT ATGCTTAATC TTGTCACACT 70931 .......... .......... .......... .......... .......... .......... 193 ATTATAAAGT TTTGAACAAT TGTTGTTTTT TTCTTTTTAC AATTCAAATA ATCTACCAAA 70991 .......... .......... .......... .......... .......... .......... 193 GATGATTAAA AATGATTTTA ATTCTGGAAA TTACATAAGG TGCCCCTTAA ATGTAGTGAG 71051 .......... .......... .......... .......... .......... .......... 193 CTTAATTTTT TTGTCTTTAG CAAAAAAATT ATTAAAGAAT AATCTTCCTT CCATTTTAAG 71111 .......... .......... .......... .......... .......... .......... 193 CAGAGTTAAA ATATATTTCA AAGAGAAATG CATATTTTTT GTGAGGAGAT TGTTTGTACT 71171 .......... .......... .......... .......... .......... .......... 193 ATATGAGAGG AGTACATTAT AATTTGTATT TAATTTTATT TTTTATTGAA TTAAAAAAGT 71231 .......... .......... .......... .......... .......... .......... 193 TTGATCGATA AGTGTTATAT CTTTTTAGAA TAACTTTATG ATAGTGTATT ATATTTTGTT 71291 .......... .......... .......... .......... .......... .......... 193 ATGAACTTAT GCTTATTTTG TAATATTGTG TAAATGATTG AGGCAATTTT GATAACTTAT 71351 .......... .......... .......... .......... .......... .......... 193 GAAAATTTGT CTTTATGAGC AAAAAATGCA ACTTAAAATT TCAAATTGAA TATCCAAACA 71411 .......... .......... .......... .......... .......... .......... 193 AAAACTTCAA TTTCATTACA TATTTCATCT TGTATACTAT GTATTATACA TTATATATTT 71471 .......... .......... .......... .......... .......... .......... 193 CATATAAATT ATACATATAT ATTTATTCTT ATTTGGTTTT ACATGTACTC TTTTTTAAAT 71531 || ||||||||| .......... .......... .......... .......... ........TC TTTTTTAAAC 205 TAATTTAGAC ACCTTCTTTT CAGTT 71556 ||||| || | | | ||| |||| AAATTT-GAT AACAT-ATTT GAGTT 228 hqPGS_C04HBa0077O05.1+_SGN-E259955+ (67452 67539,69283 69298,71520 71556) ******************************************************************************** EST sequence 143 +strand 722 n (File: SGN-E260221+) 1 GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 61 TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTCGAATT GATGTCTTAC 121 CCTCTTGGTG CGATAGAACT TGAATCTACC GTCTTACCCT CAAATATTTT TCATAATGAA 181 TGACATAAAT GAGTCTTTTT TAAACAAATT TGATAACATA TTTGAGTTTT TTTCTTATGG 241 TTAAATGATG CAAGTGCTTC ATCACTTTCA TAAAGCATTT GAACAATATT ATATATTTGT 301 GCAGAAGAGA GCTACTTCCT AATGGATATT ATATGCATCA AAAGATTCAC ATTACTCGAT 361 TTTCAAAGCA GCAAGAATGT ATCGAATGGA GCTACAAACT ATCAACACTT TAGTTAATGG 421 GGAAATTGAT TATGAAGATT TACAATCAAA GTTACTTGTC AACAAGAACA AACCAGCTAT 481 CATCAATATC AATATTGGAA CAACCTTCAA AGGAGCTATT GATGACCTCG ATTTCGTCAT 541 ACAAACACTT GAAAATTGTG GTTATTCAAA TGACAATTAT TATATCCATT GCGATGCAGC 601 ATTATGTGGG CTAATTCTCC CATTTATCAA ACATGCAAAA AAAATTACCT TCAAGAAACC 661 AATTGGAAGT ATTTCAATTT CAGGGCACAA ATTCTTGGGA TGTCCAATGT CTTGTGGCGT 721 TC Predicted gene structure (within gDNA segment 65808 to 73625): Exon 1 67452 67539 ( 88 n); cDNA 91 178 ( 88 n); score: 0.932 Intron 1 67540 69282 (1743 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0) Exon 2 69283 69298 ( 16 n); cDNA 179 193 ( 15 n); score: 0.750 Intron 2 69299 71519 (2221 n); Pd: 0.855 (s: 0), Pa: 0.000 (s: 0) Exon 3 71520 71556 ( 37 n); cDNA 194 228 ( 35 n); score: 0.757 MATCH C04HBa0077O05.1+ SGN-E260221+ 0.932 141 0.195 C PGS_C04HBa0077O05.1+_SGN-E260221+ (67452 67539,69283 69298,71520 71556) Alignment (genomic DNA sequence = upper lines): GGTGCATCGA AACTCAAATT GATGTCTTAC CCTTTTGGTG CGATAGAACT TGAATCTATC 67511 |||||||| | ||||| |||| |||||||||| ||| |||||| |||||||||| |||||||| | GGTGCATCAA AACTCGAATT GATGTCTTAC CCTCTTGGTG CGATAGAACT TGAATCTACC 150 GTCTTATCCT CAAATATTTT TCATTATGGT GCATCCGGAC TTTAACCTGA TGTCTTACCC 67571 |||||| ||| |||||||||| |||| ||| GTCTTACCCT CAAATATTTT TCATAATG.. .......... .......... .......... 178 TTTTGGTGCG ATGAAACTTG AATTCATCGT CTTACCCTTA ACCAACGGTA TAATAAATCG 67631 .......... .......... .......... .......... .......... .......... 178 AAGTACAACA TGACTCATCC TTTGAGTCTT TCAAAACAAT CAAAATAACA TTCAAATTCA 67691 .......... .......... .......... .......... .......... .......... 178 TGCTATTAAA ATTTTATACC TTCTTCTATT TAAGAAATTT TGTATAGCAT GTCATATTCA 67751 .......... .......... .......... .......... .......... .......... 178 ACCAATAGTA GTATATGTCT TCGATTCCTG ATAATTGTTA GTGACTGAAT ACTATTTTAT 67811 .......... .......... .......... .......... .......... .......... 178 TCTAAATCAT AAAAATATTC TAGAAAATAC ATACCTGATT TTATGCATAT AATACCTTGA 67871 .......... .......... .......... .......... .......... .......... 178 TTCTTATAAC GAGATCAACC AAAAACATGA GTTAAAGAAA AAGTAAAACT CAATCTTAAT 67931 .......... .......... .......... .......... .......... .......... 178 TGGCTAGAGA CTCGTGCTGA TAACGTGTTA TAAAATCAAG CTCATGGCAA TATAAATATA 67991 .......... .......... .......... .......... .......... .......... 178 AAGAGATGAA GACAAGAGGA GTAAGATGGA AGATAAGACT TTCTTCTTAT TCAAGTGTAT 68051 .......... .......... .......... .......... .......... .......... 178 GCAAATCTCA TATGTATCTA TATTACAATA GTGAATGAAC AACCCTATTT ATAGAGTGAG 68111 .......... .......... .......... .......... .......... .......... 178 AAATCACTCC AAAGGTCACC ATATTAAGTA TCATAATAAA TAGATACATT CTTATCCAAA 68171 .......... .......... .......... .......... .......... .......... 178 AAGGTTCATG TAACCTAGTG AATATGAATG GTTGTTCATG TACCAACCTT ATGGACTATC 68231 .......... .......... .......... .......... .......... .......... 178 CACTCATTCA ATGAATTTAT AACAGGTATT ACATTATTAG TGCCTAACAT ATATTTTAGC 68291 .......... .......... .......... .......... .......... .......... 178 TAATTAGAAA AACTAAAGAA TTCCTATATT TTTTTCAATA ACCTTAATCC AATTCTCTAA 68351 .......... .......... .......... .......... .......... .......... 178 CTTGTGAACC TCTAACGTCA TTCATATTTT TTTCGATAGC TATGACTCTT CCCATAACAT 68411 .......... .......... .......... .......... .......... .......... 178 ATGTATTGTA TAATGACTCT TTCTATCCAA AAACATCTAA TTTTTTCATA TATTCTTCAA 68471 .......... .......... .......... .......... .......... .......... 178 AATGTGGGTG CACTATTTTT TTAATCCATA ACTCTAAAGT AATAATCATC TTCTCATCAA 68531 .......... .......... .......... .......... .......... .......... 178 TTTCCAATTG AAATGAGTAA GTTTTTTTTT TCCAAAAACT TATTTTTTCC AGCTGAAACA 68591 .......... .......... .......... .......... .......... .......... 178 AAAGATTGAG ATGAAAAATT ATTAGGAGCT CTATTATCAT GTCAACTAGT TCAACAATAA 68651 .......... .......... .......... .......... .......... .......... 178 GAATATTTAA GTGTTATCTC ACAAATATGT TTAATTATCG AAGAGTCTCA ATGAAATTAT 68711 .......... .......... .......... .......... .......... .......... 178 TGGCCTAATT CAAAATTCTA ATAAGAAACA TCAAATATGT ATACATGGTC ATTATTTTTA 68771 .......... .......... .......... .......... .......... .......... 178 ATTATGGATA GTATTTTTTC ACTCAAAAAT CTTGATCAAC ATCAATACAC TAAAGTATTA 68831 .......... .......... .......... .......... .......... .......... 178 TTGCAATAAG TGTTCTTACC AAACATCAAT ACACTCTAAG AAAATTATTA ATATAAAAAA 68891 .......... .......... .......... .......... .......... .......... 178 GTGACTTGTA AAGATTATGA AAATTTGAAA ATTATTAATA TAAAAAAATA CTTGTAAATA 68951 .......... .......... .......... .......... .......... .......... 178 TTACGAAAAT TTACTCGTTC AAGAGGAAAA AATTGATATT TGATTGAAAA AGAAAAGACG 69011 .......... .......... .......... .......... .......... .......... 178 AAAATTTGTA GTTGTGAGAG TTAAAGTTAT GCAAAGACCG AGGGAGACGA TACCGATATT 69071 .......... .......... .......... .......... .......... .......... 178 AATTTATAAC TTATTAAATA AGTCTGAATG TTGTTATGAT TCTCCTACGG GTCTTATCAG 69131 .......... .......... .......... .......... .......... .......... 178 TTCAGACCTT TTCAGATTCA TTAGGAGGTT TTTTGAAAGA AAAAAAACAA ACGGGCTTAA 69191 .......... .......... .......... .......... .......... .......... 178 TGGGTTGAAT TTAAATCATT CATATTCAGA CTTAAAAATC ACACACACTT AATTGGTTGA 69251 .......... .......... .......... .......... .......... .......... 178 ATCTGAATGA TTAAGATTCA GATTTCCATT AAGTGCAAAC AAATGAGGTC TAAATATTTT 69311 | || | | ||||||| .......... .......... .......... .AATG-ACAT AAATGAG... .......... 193 TTTTTTCATT TAATTTGAAA GTTATATAAT AGGTGTTGAT AATTAAATTG TATTTTAAAG 69371 .......... .......... .......... .......... .......... .......... 193 AAAAAAGAGT AGACATATTT AATAATATCT ATTTTAATTG TCTCATTAAA AATAATATAA 69431 .......... .......... .......... .......... .......... .......... 193 GAAAAATTAG GTGGGACAAA ATCTTGTAAA GGTAAAACAG TACAATTTGT ATGAACTTTC 69491 .......... .......... .......... .......... .......... .......... 193 CCTAAGGAAA AATTCGGCGT GACAAAACCT TTAAAGTTTT GAATTTTAAT CTTGTGCATT 69551 .......... .......... .......... .......... .......... .......... 193 ATCCTCTTCA AAATTGCACT TGATTAAGGT TTGATGAATA AATAAGTTAT ATTATTATTG 69611 .......... .......... .......... .......... .......... .......... 193 GAATAAATTT ATTGCACGTT TATATCAACA TTCTTTTAGA GATCACGTGA AGAGAAAAGT 69671 .......... .......... .......... .......... .......... .......... 193 TTTGGTGAAG TGTGTTTCGT CCTATTTCTT TTTATGAATT CTCACTTTAC TTGGATTATG 69731 .......... .......... .......... .......... .......... .......... 193 CATGTAACAT TATCTTCATA TAAGTCTAGA GTATTTTGTC ACATTTCAAA ATGCATTTTT 69791 .......... .......... .......... .......... .......... .......... 193 CTCAAATGAG ATGTACCAAC TCAACCACAT ATTTCGAATT GCTTCATGAA TAGCTATTTC 69851 .......... .......... .......... .......... .......... .......... 193 AACATGATTT GATGAAATAG TAATGATAGA CTATTGACTA TTTTGTAGAT CGCCAAGATA 69911 .......... .......... .......... .......... .......... .......... 193 TAACAGTATC CCCACATATG AACATGTAGC TTATTTGAGA TTGTAATTTG TGCGAATTAA 69971 .......... .......... .......... .......... .......... .......... 193 ATATATTTTG CATCAATGTA ACCAACAAGA TCGGTTTCTT TGATTCCATT CCAATGTCCC 70031 .......... .......... .......... .......... .......... .......... 193 TTGGTAGGAG TGATAACGCC AGTACTTTCA ACAAAATGAC ATGACTAGAA AATAAATAAA 70091 .......... .......... .......... .......... .......... .......... 193 ACCTTAGAGA CTGATAACAA TTGAACGAAA CACGCAATTT GCGGAATCAA TAAATTTGTT 70151 .......... .......... .......... .......... .......... .......... 193 TCATTAGTTA GATTGTAAAC ATAAATTAAA ATAAACTACA TCATATAAAA TCACAGTGTA 70211 .......... .......... .......... .......... .......... .......... 193 TGATTCTATC TTGTTTTAGA ATATAGGTCT CAATGTTTGG TGGTTGAATC TTCTTAAATT 70271 .......... .......... .......... .......... .......... .......... 193 TTTTTATTTT TCTTGACTAC TTCAAGAAGA AGATGGGGGT GAGGGTCTTG TTTTTTTAAT 70331 .......... .......... .......... .......... .......... .......... 193 AAAGAGAAAA ATCTCATTGG AAGGCCCTAT TTGGTAAATG CAATAAAATC ATATTAGATA 70391 .......... .......... .......... .......... .......... .......... 193 AAGTTGAAAT TTTATTTGGA CTATAAATTA ATGGGCCAAT TTTTGTATTT GAAAAATATA 70451 .......... .......... .......... .......... .......... .......... 193 AATCATAATA TGAAATTCTC AAATCAAGAT TTTTGAATAA CTTGAAAGTT CATATCATAA 70511 .......... .......... .......... .......... .......... .......... 193 TTTACAATCA TAAAATAAAA TCATATGTCC AAATATTGAT TTTATCTCAA GTCCAAACCC 70571 .......... .......... .......... .......... .......... .......... 193 TTGCTTAAGG TCTAAGTGTA CATTATAGTC CTATCAATTG TGTTCCTTTT TTATTTTCAT 70631 .......... .......... .......... .......... .......... .......... 193 ATAAGAATAT ATTACTTATT TAATTTACAT GAATCTCTCT CGATTTAATC ACATAAATAA 70691 .......... .......... .......... .......... .......... .......... 193 TTTAATTTAA TTTTTTTAAA ATTATTTTCC TTATTCACCA ATCAAACGAT CTAGAGTTAT 70751 .......... .......... .......... .......... .......... .......... 193 TATTAAGGTT TGGCCATAAC TTTATTCTAC CAAACTATGG TATGGTTCAA TTCAAGAATC 70811 .......... .......... .......... .......... .......... .......... 193 AATGAAAAAT GGGGACCAAA TTAATGTGTG GGCAAATAAT AGTATATAAT TGCTAACTGC 70871 .......... .......... .......... .......... .......... .......... 193 ATCTTGGGAG ATGATTCATT GTCCCTTTTG ACCCTACACT ATGCTTAATC TTGTCACACT 70931 .......... .......... .......... .......... .......... .......... 193 ATTATAAAGT TTTGAACAAT TGTTGTTTTT TTCTTTTTAC AATTCAAATA ATCTACCAAA 70991 .......... .......... .......... .......... .......... .......... 193 GATGATTAAA AATGATTTTA ATTCTGGAAA TTACATAAGG TGCCCCTTAA ATGTAGTGAG 71051 .......... .......... .......... .......... .......... .......... 193 CTTAATTTTT TTGTCTTTAG CAAAAAAATT ATTAAAGAAT AATCTTCCTT CCATTTTAAG 71111 .......... .......... .......... .......... .......... .......... 193 CAGAGTTAAA ATATATTTCA AAGAGAAATG CATATTTTTT GTGAGGAGAT TGTTTGTACT 71171 .......... .......... .......... .......... .......... .......... 193 ATATGAGAGG AGTACATTAT AATTTGTATT TAATTTTATT TTTTATTGAA TTAAAAAAGT 71231 .......... .......... .......... .......... .......... .......... 193 TTGATCGATA AGTGTTATAT CTTTTTAGAA TAACTTTATG ATAGTGTATT ATATTTTGTT 71291 .......... .......... .......... .......... .......... .......... 193 ATGAACTTAT GCTTATTTTG TAATATTGTG TAAATGATTG AGGCAATTTT GATAACTTAT 71351 .......... .......... .......... .......... .......... .......... 193 GAAAATTTGT CTTTATGAGC AAAAAATGCA ACTTAAAATT TCAAATTGAA TATCCAAACA 71411 .......... .......... .......... .......... .......... .......... 193 AAAACTTCAA TTTCATTACA TATTTCATCT TGTATACTAT GTATTATACA TTATATATTT 71471 .......... .......... .......... .......... .......... .......... 193 CATATAAATT ATACATATAT ATTTATTCTT ATTTGGTTTT ACATGTACTC TTTTTTAAAT 71531 || ||||||||| .......... .......... .......... .......... ........TC TTTTTTAAAC 205 TAATTTAGAC ACCTTCTTTT CAGTT 71556 ||||| || | | | ||| |||| AAATTT-GAT AACAT-ATTT GAGTT 228 hqPGS_C04HBa0077O05.1+_SGN-E260221+ (67452 67539,69283 69298,71520 71556) ******************************************************************************** EST sequence 44 +strand 647 n (File: SGN-E255405+) 1 GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 61 TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTCGAATT GATGTCTTAC 121 CCTCTTGGTG CGATAGAACT TGAATCTACC GTCTTACCCT CAAATATTTT TCATAATGAA 181 TGACATAAAT GAGTCTTTTT TAAACAAATT TGATAACATA TTTGAGTTTT TTTCTTATGG 241 TTAAATGATG CAAGTGCTTC ATCACTTTCA TAAAGCATTT GAACAATATT ATATATTTGT 301 GCAGAAGAGA GCTACTTCCT AATGGATATT ATATGCATCA AAAGATTCAC ATTACTCGAT 361 TTTCAAAGCA GCAAGAATGT ATCGAATGGA GCTACAAACT ATCAACACTT TAGTTAATGG 421 GGAAATTGAT TATGAAGATT TACAATCAAA GTTACTTGTC AACAAGAACA AACCAGCTAT 481 CATCAATATC AATATTGGAA CAACCTTCAA AGGAGCTATT GATGACCTCG ATTTCGTCAT 541 ACAAACACTT GAAAATTGTG GTTATTCAAA TGACAATTAT TATATCCATT GCGATGCAGC 601 ATTATGTGGG CTAATTCTCC CATTTATCAA ACATGCAAAA AAAATTA Predicted gene structure (within gDNA segment 65808 to 73475): Exon 1 67452 67539 ( 88 n); cDNA 91 178 ( 88 n); score: 0.932 Intron 1 67540 69282 (1743 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0) Exon 2 69283 69298 ( 16 n); cDNA 179 193 ( 15 n); score: 0.750 Intron 2 69299 71519 (2221 n); Pd: 0.855 (s: 0), Pa: 0.000 (s: 0) Exon 3 71520 71556 ( 37 n); cDNA 194 228 ( 35 n); score: 0.757 MATCH C04HBa0077O05.1+ SGN-E255405+ 0.932 141 0.218 C PGS_C04HBa0077O05.1+_SGN-E255405+ (67452 67539,69283 69298,71520 71556) Alignment (genomic DNA sequence = upper lines): GGTGCATCGA AACTCAAATT GATGTCTTAC CCTTTTGGTG CGATAGAACT TGAATCTATC 67511 |||||||| | ||||| |||| |||||||||| ||| |||||| |||||||||| |||||||| | GGTGCATCAA AACTCGAATT GATGTCTTAC CCTCTTGGTG CGATAGAACT TGAATCTACC 150 GTCTTATCCT CAAATATTTT TCATTATGGT GCATCCGGAC TTTAACCTGA TGTCTTACCC 67571 |||||| ||| |||||||||| |||| ||| GTCTTACCCT CAAATATTTT TCATAATG.. .......... .......... .......... 178 TTTTGGTGCG ATGAAACTTG AATTCATCGT CTTACCCTTA ACCAACGGTA TAATAAATCG 67631 .......... .......... .......... .......... .......... .......... 178 AAGTACAACA TGACTCATCC TTTGAGTCTT TCAAAACAAT CAAAATAACA TTCAAATTCA 67691 .......... .......... .......... .......... .......... .......... 178 TGCTATTAAA ATTTTATACC TTCTTCTATT TAAGAAATTT TGTATAGCAT GTCATATTCA 67751 .......... .......... .......... .......... .......... .......... 178 ACCAATAGTA GTATATGTCT TCGATTCCTG ATAATTGTTA GTGACTGAAT ACTATTTTAT 67811 .......... .......... .......... .......... .......... .......... 178 TCTAAATCAT AAAAATATTC TAGAAAATAC ATACCTGATT TTATGCATAT AATACCTTGA 67871 .......... .......... .......... .......... .......... .......... 178 TTCTTATAAC GAGATCAACC AAAAACATGA GTTAAAGAAA AAGTAAAACT CAATCTTAAT 67931 .......... .......... .......... .......... .......... .......... 178 TGGCTAGAGA CTCGTGCTGA TAACGTGTTA TAAAATCAAG CTCATGGCAA TATAAATATA 67991 .......... .......... .......... .......... .......... .......... 178 AAGAGATGAA GACAAGAGGA GTAAGATGGA AGATAAGACT TTCTTCTTAT TCAAGTGTAT 68051 .......... .......... .......... .......... .......... .......... 178 GCAAATCTCA TATGTATCTA TATTACAATA GTGAATGAAC AACCCTATTT ATAGAGTGAG 68111 .......... .......... .......... .......... .......... .......... 178 AAATCACTCC AAAGGTCACC ATATTAAGTA TCATAATAAA TAGATACATT CTTATCCAAA 68171 .......... .......... .......... .......... .......... .......... 178 AAGGTTCATG TAACCTAGTG AATATGAATG GTTGTTCATG TACCAACCTT ATGGACTATC 68231 .......... .......... .......... .......... .......... .......... 178 CACTCATTCA ATGAATTTAT AACAGGTATT ACATTATTAG TGCCTAACAT ATATTTTAGC 68291 .......... .......... .......... .......... .......... .......... 178 TAATTAGAAA AACTAAAGAA TTCCTATATT TTTTTCAATA ACCTTAATCC AATTCTCTAA 68351 .......... .......... .......... .......... .......... .......... 178 CTTGTGAACC TCTAACGTCA TTCATATTTT TTTCGATAGC TATGACTCTT CCCATAACAT 68411 .......... .......... .......... .......... .......... .......... 178 ATGTATTGTA TAATGACTCT TTCTATCCAA AAACATCTAA TTTTTTCATA TATTCTTCAA 68471 .......... .......... .......... .......... .......... .......... 178 AATGTGGGTG CACTATTTTT TTAATCCATA ACTCTAAAGT AATAATCATC TTCTCATCAA 68531 .......... .......... .......... .......... .......... .......... 178 TTTCCAATTG AAATGAGTAA GTTTTTTTTT TCCAAAAACT TATTTTTTCC AGCTGAAACA 68591 .......... .......... .......... .......... .......... .......... 178 AAAGATTGAG ATGAAAAATT ATTAGGAGCT CTATTATCAT GTCAACTAGT TCAACAATAA 68651 .......... .......... .......... .......... .......... .......... 178 GAATATTTAA GTGTTATCTC ACAAATATGT TTAATTATCG AAGAGTCTCA ATGAAATTAT 68711 .......... .......... .......... .......... .......... .......... 178 TGGCCTAATT CAAAATTCTA ATAAGAAACA TCAAATATGT ATACATGGTC ATTATTTTTA 68771 .......... .......... .......... .......... .......... .......... 178 ATTATGGATA GTATTTTTTC ACTCAAAAAT CTTGATCAAC ATCAATACAC TAAAGTATTA 68831 .......... .......... .......... .......... .......... .......... 178 TTGCAATAAG TGTTCTTACC AAACATCAAT ACACTCTAAG AAAATTATTA ATATAAAAAA 68891 .......... .......... .......... .......... .......... .......... 178 GTGACTTGTA AAGATTATGA AAATTTGAAA ATTATTAATA TAAAAAAATA CTTGTAAATA 68951 .......... .......... .......... .......... .......... .......... 178 TTACGAAAAT TTACTCGTTC AAGAGGAAAA AATTGATATT TGATTGAAAA AGAAAAGACG 69011 .......... .......... .......... .......... .......... .......... 178 AAAATTTGTA GTTGTGAGAG TTAAAGTTAT GCAAAGACCG AGGGAGACGA TACCGATATT 69071 .......... .......... .......... .......... .......... .......... 178 AATTTATAAC TTATTAAATA AGTCTGAATG TTGTTATGAT TCTCCTACGG GTCTTATCAG 69131 .......... .......... .......... .......... .......... .......... 178 TTCAGACCTT TTCAGATTCA TTAGGAGGTT TTTTGAAAGA AAAAAAACAA ACGGGCTTAA 69191 .......... .......... .......... .......... .......... .......... 178 TGGGTTGAAT TTAAATCATT CATATTCAGA CTTAAAAATC ACACACACTT AATTGGTTGA 69251 .......... .......... .......... .......... .......... .......... 178 ATCTGAATGA TTAAGATTCA GATTTCCATT AAGTGCAAAC AAATGAGGTC TAAATATTTT 69311 | || | | ||||||| .......... .......... .......... .AATG-ACAT AAATGAG... .......... 193 TTTTTTCATT TAATTTGAAA GTTATATAAT AGGTGTTGAT AATTAAATTG TATTTTAAAG 69371 .......... .......... .......... .......... .......... .......... 193 AAAAAAGAGT AGACATATTT AATAATATCT ATTTTAATTG TCTCATTAAA AATAATATAA 69431 .......... .......... .......... .......... .......... .......... 193 GAAAAATTAG GTGGGACAAA ATCTTGTAAA GGTAAAACAG TACAATTTGT ATGAACTTTC 69491 .......... .......... .......... .......... .......... .......... 193 CCTAAGGAAA AATTCGGCGT GACAAAACCT TTAAAGTTTT GAATTTTAAT CTTGTGCATT 69551 .......... .......... .......... .......... .......... .......... 193 ATCCTCTTCA AAATTGCACT TGATTAAGGT TTGATGAATA AATAAGTTAT ATTATTATTG 69611 .......... .......... .......... .......... .......... .......... 193 GAATAAATTT ATTGCACGTT TATATCAACA TTCTTTTAGA GATCACGTGA AGAGAAAAGT 69671 .......... .......... .......... .......... .......... .......... 193 TTTGGTGAAG TGTGTTTCGT CCTATTTCTT TTTATGAATT CTCACTTTAC TTGGATTATG 69731 .......... .......... .......... .......... .......... .......... 193 CATGTAACAT TATCTTCATA TAAGTCTAGA GTATTTTGTC ACATTTCAAA ATGCATTTTT 69791 .......... .......... .......... .......... .......... .......... 193 CTCAAATGAG ATGTACCAAC TCAACCACAT ATTTCGAATT GCTTCATGAA TAGCTATTTC 69851 .......... .......... .......... .......... .......... .......... 193 AACATGATTT GATGAAATAG TAATGATAGA CTATTGACTA TTTTGTAGAT CGCCAAGATA 69911 .......... .......... .......... .......... .......... .......... 193 TAACAGTATC CCCACATATG AACATGTAGC TTATTTGAGA TTGTAATTTG TGCGAATTAA 69971 .......... .......... .......... .......... .......... .......... 193 ATATATTTTG CATCAATGTA ACCAACAAGA TCGGTTTCTT TGATTCCATT CCAATGTCCC 70031 .......... .......... .......... .......... .......... .......... 193 TTGGTAGGAG TGATAACGCC AGTACTTTCA ACAAAATGAC ATGACTAGAA AATAAATAAA 70091 .......... .......... .......... .......... .......... .......... 193 ACCTTAGAGA CTGATAACAA TTGAACGAAA CACGCAATTT GCGGAATCAA TAAATTTGTT 70151 .......... .......... .......... .......... .......... .......... 193 TCATTAGTTA GATTGTAAAC ATAAATTAAA ATAAACTACA TCATATAAAA TCACAGTGTA 70211 .......... .......... .......... .......... .......... .......... 193 TGATTCTATC TTGTTTTAGA ATATAGGTCT CAATGTTTGG TGGTTGAATC TTCTTAAATT 70271 .......... .......... .......... .......... .......... .......... 193 TTTTTATTTT TCTTGACTAC TTCAAGAAGA AGATGGGGGT GAGGGTCTTG TTTTTTTAAT 70331 .......... .......... .......... .......... .......... .......... 193 AAAGAGAAAA ATCTCATTGG AAGGCCCTAT TTGGTAAATG CAATAAAATC ATATTAGATA 70391 .......... .......... .......... .......... .......... .......... 193 AAGTTGAAAT TTTATTTGGA CTATAAATTA ATGGGCCAAT TTTTGTATTT GAAAAATATA 70451 .......... .......... .......... .......... .......... .......... 193 AATCATAATA TGAAATTCTC AAATCAAGAT TTTTGAATAA CTTGAAAGTT CATATCATAA 70511 .......... .......... .......... .......... .......... .......... 193 TTTACAATCA TAAAATAAAA TCATATGTCC AAATATTGAT TTTATCTCAA GTCCAAACCC 70571 .......... .......... .......... .......... .......... .......... 193 TTGCTTAAGG TCTAAGTGTA CATTATAGTC CTATCAATTG TGTTCCTTTT TTATTTTCAT 70631 .......... .......... .......... .......... .......... .......... 193 ATAAGAATAT ATTACTTATT TAATTTACAT GAATCTCTCT CGATTTAATC ACATAAATAA 70691 .......... .......... .......... .......... .......... .......... 193 TTTAATTTAA TTTTTTTAAA ATTATTTTCC TTATTCACCA ATCAAACGAT CTAGAGTTAT 70751 .......... .......... .......... .......... .......... .......... 193 TATTAAGGTT TGGCCATAAC TTTATTCTAC CAAACTATGG TATGGTTCAA TTCAAGAATC 70811 .......... .......... .......... .......... .......... .......... 193 AATGAAAAAT GGGGACCAAA TTAATGTGTG GGCAAATAAT AGTATATAAT TGCTAACTGC 70871 .......... .......... .......... .......... .......... .......... 193 ATCTTGGGAG ATGATTCATT GTCCCTTTTG ACCCTACACT ATGCTTAATC TTGTCACACT 70931 .......... .......... .......... .......... .......... .......... 193 ATTATAAAGT TTTGAACAAT TGTTGTTTTT TTCTTTTTAC AATTCAAATA ATCTACCAAA 70991 .......... .......... .......... .......... .......... .......... 193 GATGATTAAA AATGATTTTA ATTCTGGAAA TTACATAAGG TGCCCCTTAA ATGTAGTGAG 71051 .......... .......... .......... .......... .......... .......... 193 CTTAATTTTT TTGTCTTTAG CAAAAAAATT ATTAAAGAAT AATCTTCCTT CCATTTTAAG 71111 .......... .......... .......... .......... .......... .......... 193 CAGAGTTAAA ATATATTTCA AAGAGAAATG CATATTTTTT GTGAGGAGAT TGTTTGTACT 71171 .......... .......... .......... .......... .......... .......... 193 ATATGAGAGG AGTACATTAT AATTTGTATT TAATTTTATT TTTTATTGAA TTAAAAAAGT 71231 .......... .......... .......... .......... .......... .......... 193 TTGATCGATA AGTGTTATAT CTTTTTAGAA TAACTTTATG ATAGTGTATT ATATTTTGTT 71291 .......... .......... .......... .......... .......... .......... 193 ATGAACTTAT GCTTATTTTG TAATATTGTG TAAATGATTG AGGCAATTTT GATAACTTAT 71351 .......... .......... .......... .......... .......... .......... 193 GAAAATTTGT CTTTATGAGC AAAAAATGCA ACTTAAAATT TCAAATTGAA TATCCAAACA 71411 .......... .......... .......... .......... .......... .......... 193 AAAACTTCAA TTTCATTACA TATTTCATCT TGTATACTAT GTATTATACA TTATATATTT 71471 .......... .......... .......... .......... .......... .......... 193 CATATAAATT ATACATATAT ATTTATTCTT ATTTGGTTTT ACATGTACTC TTTTTTAAAT 71531 || ||||||||| .......... .......... .......... .......... ........TC TTTTTTAAAC 205 TAATTTAGAC ACCTTCTTTT CAGTT 71556 ||||| || | | | ||| |||| AAATTT-GAT AACAT-ATTT GAGTT 228 hqPGS_C04HBa0077O05.1+_SGN-E255405+ (67452 67539,69283 69298,71520 71556) ******************************************************************************** EST sequence 52 +strand 716 n (File: SGN-E375221+) 1 GAGACTCAAA CTCAATGTCT TATCCATACA AGGCACATTA GGCCATAATT CTATGGGACT 61 TGAACCCAAT ACCTTATCAT TATGGTGCAT CAAAACTCGA ATTGATGTCT TACCCTCTTG 121 GTGCGATAGA ACTTGAATCT ACCGTCTTAC CCTCAAATAT TTTTCATAAT GAATGACATA 181 AATGAGTCTT TTTTAAACAA ATTTGATAAC ATATTTGAGT TTTTTTCTTA TGGTTAAATG 241 ATGCAAGTGC TTCATCACTT TCATAAAGCA TTTGAACAAT ATTATATATT TGTGCAGAAG 301 AGAGCTACTT CCTAATGGAT ATTATATGCA TCAAAAGATT CACATTACTC GATTTTCAAA 361 GCAGCAAGAA TGTATCGAAT GGAGCTACAA ACTATCAACA CTTTAGTTAA TGGGGAAATT 421 GATTATGAAG ATTTACAATC AAAGTTACTT GTCAACAAGA ACAAACCAGC TATCATCAAT 481 ATCAATATTG GTAAAAATAC ATACATATAT ATTCTTACAT CTTATAACAT CACTTTTGGT 541 AAATTAGTAT ATATGTGTTT ATAGGAACAA CCTTCAGAGG AGCTATTGAT GACCTCGATT 601 TCGTCATACA AACACTTGAA AATTGTGGTT ATTCAAATGA CAATTATTAT ATCCATTGCG 661 ATGCAGCATT ATGTGGGCTA ATTCTCCCAT TTATCAAACA TGTAAGCTTA TTTTTA Predicted gene structure (within gDNA segment 65878 to 73635): Exon 1 67452 67539 ( 88 n); cDNA 84 171 ( 88 n); score: 0.932 Intron 1 67540 69282 (1743 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0) Exon 2 69283 69298 ( 16 n); cDNA 172 186 ( 15 n); score: 0.750 Intron 2 69299 71519 (2221 n); Pd: 0.855 (s: 0), Pa: 0.000 (s: 0) Exon 3 71520 71556 ( 37 n); cDNA 187 221 ( 35 n); score: 0.757 MATCH C04HBa0077O05.1+ SGN-E375221+ 0.932 141 0.197 C PGS_C04HBa0077O05.1+_SGN-E375221+ (67452 67539,69283 69298,71520 71556) Alignment (genomic DNA sequence = upper lines): GGTGCATCGA AACTCAAATT GATGTCTTAC CCTTTTGGTG CGATAGAACT TGAATCTATC 67511 |||||||| | ||||| |||| |||||||||| ||| |||||| |||||||||| |||||||| | GGTGCATCAA AACTCGAATT GATGTCTTAC CCTCTTGGTG CGATAGAACT TGAATCTACC 143 GTCTTATCCT CAAATATTTT TCATTATGGT GCATCCGGAC TTTAACCTGA TGTCTTACCC 67571 |||||| ||| |||||||||| |||| ||| GTCTTACCCT CAAATATTTT TCATAATG.. .......... .......... .......... 171 TTTTGGTGCG ATGAAACTTG AATTCATCGT CTTACCCTTA ACCAACGGTA TAATAAATCG 67631 .......... .......... .......... .......... .......... .......... 171 AAGTACAACA TGACTCATCC TTTGAGTCTT TCAAAACAAT CAAAATAACA TTCAAATTCA 67691 .......... .......... .......... .......... .......... .......... 171 TGCTATTAAA ATTTTATACC TTCTTCTATT TAAGAAATTT TGTATAGCAT GTCATATTCA 67751 .......... .......... .......... .......... .......... .......... 171 ACCAATAGTA GTATATGTCT TCGATTCCTG ATAATTGTTA GTGACTGAAT ACTATTTTAT 67811 .......... .......... .......... .......... .......... .......... 171 TCTAAATCAT AAAAATATTC TAGAAAATAC ATACCTGATT TTATGCATAT AATACCTTGA 67871 .......... .......... .......... .......... .......... .......... 171 TTCTTATAAC GAGATCAACC AAAAACATGA GTTAAAGAAA AAGTAAAACT CAATCTTAAT 67931 .......... .......... .......... .......... .......... .......... 171 TGGCTAGAGA CTCGTGCTGA TAACGTGTTA TAAAATCAAG CTCATGGCAA TATAAATATA 67991 .......... .......... .......... .......... .......... .......... 171 AAGAGATGAA GACAAGAGGA GTAAGATGGA AGATAAGACT TTCTTCTTAT TCAAGTGTAT 68051 .......... .......... .......... .......... .......... .......... 171 GCAAATCTCA TATGTATCTA TATTACAATA GTGAATGAAC AACCCTATTT ATAGAGTGAG 68111 .......... .......... .......... .......... .......... .......... 171 AAATCACTCC AAAGGTCACC ATATTAAGTA TCATAATAAA TAGATACATT CTTATCCAAA 68171 .......... .......... .......... .......... .......... .......... 171 AAGGTTCATG TAACCTAGTG AATATGAATG GTTGTTCATG TACCAACCTT ATGGACTATC 68231 .......... .......... .......... .......... .......... .......... 171 CACTCATTCA ATGAATTTAT AACAGGTATT ACATTATTAG TGCCTAACAT ATATTTTAGC 68291 .......... .......... .......... .......... .......... .......... 171 TAATTAGAAA AACTAAAGAA TTCCTATATT TTTTTCAATA ACCTTAATCC AATTCTCTAA 68351 .......... .......... .......... .......... .......... .......... 171 CTTGTGAACC TCTAACGTCA TTCATATTTT TTTCGATAGC TATGACTCTT CCCATAACAT 68411 .......... .......... .......... .......... .......... .......... 171 ATGTATTGTA TAATGACTCT TTCTATCCAA AAACATCTAA TTTTTTCATA TATTCTTCAA 68471 .......... .......... .......... .......... .......... .......... 171 AATGTGGGTG CACTATTTTT TTAATCCATA ACTCTAAAGT AATAATCATC TTCTCATCAA 68531 .......... .......... .......... .......... .......... .......... 171 TTTCCAATTG AAATGAGTAA GTTTTTTTTT TCCAAAAACT TATTTTTTCC AGCTGAAACA 68591 .......... .......... .......... .......... .......... .......... 171 AAAGATTGAG ATGAAAAATT ATTAGGAGCT CTATTATCAT GTCAACTAGT TCAACAATAA 68651 .......... .......... .......... .......... .......... .......... 171 GAATATTTAA GTGTTATCTC ACAAATATGT TTAATTATCG AAGAGTCTCA ATGAAATTAT 68711 .......... .......... .......... .......... .......... .......... 171 TGGCCTAATT CAAAATTCTA ATAAGAAACA TCAAATATGT ATACATGGTC ATTATTTTTA 68771 .......... .......... .......... .......... .......... .......... 171 ATTATGGATA GTATTTTTTC ACTCAAAAAT CTTGATCAAC ATCAATACAC TAAAGTATTA 68831 .......... .......... .......... .......... .......... .......... 171 TTGCAATAAG TGTTCTTACC AAACATCAAT ACACTCTAAG AAAATTATTA ATATAAAAAA 68891 .......... .......... .......... .......... .......... .......... 171 GTGACTTGTA AAGATTATGA AAATTTGAAA ATTATTAATA TAAAAAAATA CTTGTAAATA 68951 .......... .......... .......... .......... .......... .......... 171 TTACGAAAAT TTACTCGTTC AAGAGGAAAA AATTGATATT TGATTGAAAA AGAAAAGACG 69011 .......... .......... .......... .......... .......... .......... 171 AAAATTTGTA GTTGTGAGAG TTAAAGTTAT GCAAAGACCG AGGGAGACGA TACCGATATT 69071 .......... .......... .......... .......... .......... .......... 171 AATTTATAAC TTATTAAATA AGTCTGAATG TTGTTATGAT TCTCCTACGG GTCTTATCAG 69131 .......... .......... .......... .......... .......... .......... 171 TTCAGACCTT TTCAGATTCA TTAGGAGGTT TTTTGAAAGA AAAAAAACAA ACGGGCTTAA 69191 .......... .......... .......... .......... .......... .......... 171 TGGGTTGAAT TTAAATCATT CATATTCAGA CTTAAAAATC ACACACACTT AATTGGTTGA 69251 .......... .......... .......... .......... .......... .......... 171 ATCTGAATGA TTAAGATTCA GATTTCCATT AAGTGCAAAC AAATGAGGTC TAAATATTTT 69311 | || | | ||||||| .......... .......... .......... .AATG-ACAT AAATGAG... .......... 186 TTTTTTCATT TAATTTGAAA GTTATATAAT AGGTGTTGAT AATTAAATTG TATTTTAAAG 69371 .......... .......... .......... .......... .......... .......... 186 AAAAAAGAGT AGACATATTT AATAATATCT ATTTTAATTG TCTCATTAAA AATAATATAA 69431 .......... .......... .......... .......... .......... .......... 186 GAAAAATTAG GTGGGACAAA ATCTTGTAAA GGTAAAACAG TACAATTTGT ATGAACTTTC 69491 .......... .......... .......... .......... .......... .......... 186 CCTAAGGAAA AATTCGGCGT GACAAAACCT TTAAAGTTTT GAATTTTAAT CTTGTGCATT 69551 .......... .......... .......... .......... .......... .......... 186 ATCCTCTTCA AAATTGCACT TGATTAAGGT TTGATGAATA AATAAGTTAT ATTATTATTG 69611 .......... .......... .......... .......... .......... .......... 186 GAATAAATTT ATTGCACGTT TATATCAACA TTCTTTTAGA GATCACGTGA AGAGAAAAGT 69671 .......... .......... .......... .......... .......... .......... 186 TTTGGTGAAG TGTGTTTCGT CCTATTTCTT TTTATGAATT CTCACTTTAC TTGGATTATG 69731 .......... .......... .......... .......... .......... .......... 186 CATGTAACAT TATCTTCATA TAAGTCTAGA GTATTTTGTC ACATTTCAAA ATGCATTTTT 69791 .......... .......... .......... .......... .......... .......... 186 CTCAAATGAG ATGTACCAAC TCAACCACAT ATTTCGAATT GCTTCATGAA TAGCTATTTC 69851 .......... .......... .......... .......... .......... .......... 186 AACATGATTT GATGAAATAG TAATGATAGA CTATTGACTA TTTTGTAGAT CGCCAAGATA 69911 .......... .......... .......... .......... .......... .......... 186 TAACAGTATC CCCACATATG AACATGTAGC TTATTTGAGA TTGTAATTTG TGCGAATTAA 69971 .......... .......... .......... .......... .......... .......... 186 ATATATTTTG CATCAATGTA ACCAACAAGA TCGGTTTCTT TGATTCCATT CCAATGTCCC 70031 .......... .......... .......... .......... .......... .......... 186 TTGGTAGGAG TGATAACGCC AGTACTTTCA ACAAAATGAC ATGACTAGAA AATAAATAAA 70091 .......... .......... .......... .......... .......... .......... 186 ACCTTAGAGA CTGATAACAA TTGAACGAAA CACGCAATTT GCGGAATCAA TAAATTTGTT 70151 .......... .......... .......... .......... .......... .......... 186 TCATTAGTTA GATTGTAAAC ATAAATTAAA ATAAACTACA TCATATAAAA TCACAGTGTA 70211 .......... .......... .......... .......... .......... .......... 186 TGATTCTATC TTGTTTTAGA ATATAGGTCT CAATGTTTGG TGGTTGAATC TTCTTAAATT 70271 .......... .......... .......... .......... .......... .......... 186 TTTTTATTTT TCTTGACTAC TTCAAGAAGA AGATGGGGGT GAGGGTCTTG TTTTTTTAAT 70331 .......... .......... .......... .......... .......... .......... 186 AAAGAGAAAA ATCTCATTGG AAGGCCCTAT TTGGTAAATG CAATAAAATC ATATTAGATA 70391 .......... .......... .......... .......... .......... .......... 186 AAGTTGAAAT TTTATTTGGA CTATAAATTA ATGGGCCAAT TTTTGTATTT GAAAAATATA 70451 .......... .......... .......... .......... .......... .......... 186 AATCATAATA TGAAATTCTC AAATCAAGAT TTTTGAATAA CTTGAAAGTT CATATCATAA 70511 .......... .......... .......... .......... .......... .......... 186 TTTACAATCA TAAAATAAAA TCATATGTCC AAATATTGAT TTTATCTCAA GTCCAAACCC 70571 .......... .......... .......... .......... .......... .......... 186 TTGCTTAAGG TCTAAGTGTA CATTATAGTC CTATCAATTG TGTTCCTTTT TTATTTTCAT 70631 .......... .......... .......... .......... .......... .......... 186 ATAAGAATAT ATTACTTATT TAATTTACAT GAATCTCTCT CGATTTAATC ACATAAATAA 70691 .......... .......... .......... .......... .......... .......... 186 TTTAATTTAA TTTTTTTAAA ATTATTTTCC TTATTCACCA ATCAAACGAT CTAGAGTTAT 70751 .......... .......... .......... .......... .......... .......... 186 TATTAAGGTT TGGCCATAAC TTTATTCTAC CAAACTATGG TATGGTTCAA TTCAAGAATC 70811 .......... .......... .......... .......... .......... .......... 186 AATGAAAAAT GGGGACCAAA TTAATGTGTG GGCAAATAAT AGTATATAAT TGCTAACTGC 70871 .......... .......... .......... .......... .......... .......... 186 ATCTTGGGAG ATGATTCATT GTCCCTTTTG ACCCTACACT ATGCTTAATC TTGTCACACT 70931 .......... .......... .......... .......... .......... .......... 186 ATTATAAAGT TTTGAACAAT TGTTGTTTTT TTCTTTTTAC AATTCAAATA ATCTACCAAA 70991 .......... .......... .......... .......... .......... .......... 186 GATGATTAAA AATGATTTTA ATTCTGGAAA TTACATAAGG TGCCCCTTAA ATGTAGTGAG 71051 .......... .......... .......... .......... .......... .......... 186 CTTAATTTTT TTGTCTTTAG CAAAAAAATT ATTAAAGAAT AATCTTCCTT CCATTTTAAG 71111 .......... .......... .......... .......... .......... .......... 186 CAGAGTTAAA ATATATTTCA AAGAGAAATG CATATTTTTT GTGAGGAGAT TGTTTGTACT 71171 .......... .......... .......... .......... .......... .......... 186 ATATGAGAGG AGTACATTAT AATTTGTATT TAATTTTATT TTTTATTGAA TTAAAAAAGT 71231 .......... .......... .......... .......... .......... .......... 186 TTGATCGATA AGTGTTATAT CTTTTTAGAA TAACTTTATG ATAGTGTATT ATATTTTGTT 71291 .......... .......... .......... .......... .......... .......... 186 ATGAACTTAT GCTTATTTTG TAATATTGTG TAAATGATTG AGGCAATTTT GATAACTTAT 71351 .......... .......... .......... .......... .......... .......... 186 GAAAATTTGT CTTTATGAGC AAAAAATGCA ACTTAAAATT TCAAATTGAA TATCCAAACA 71411 .......... .......... .......... .......... .......... .......... 186 AAAACTTCAA TTTCATTACA TATTTCATCT TGTATACTAT GTATTATACA TTATATATTT 71471 .......... .......... .......... .......... .......... .......... 186 CATATAAATT ATACATATAT ATTTATTCTT ATTTGGTTTT ACATGTACTC TTTTTTAAAT 71531 || ||||||||| .......... .......... .......... .......... ........TC TTTTTTAAAC 198 TAATTTAGAC ACCTTCTTTT CAGTT 71556 ||||| || | | | ||| |||| AAATTT-GAT AACAT-ATTT GAGTT 221 hqPGS_C04HBa0077O05.1+_SGN-E375221+ (67452 67539,69283 69298,71520 71556) ******************************************************************************** EST sequence 56 +strand 608 n (File: SGN-E251501+) 1 GAGACTCAAA CTCAATGTCT TATCCATACA AGGCACATTA GGCCATAATT CTATGGGACT 61 TGAACCCAAT ACCTTATCAT TATGGTGCAT CAAAACTCGA ATTGATGTCT TACCCTCTTG 121 GTGCGATAGA ACTTGAATCT ACCGTCTTAC CCTCAAATAT TTTTCATAAT GAATGACATA 181 AATGAGTCTT TTTTAAACAA ATTTGATAAC ATATTTGAGT TTTTTTCTTA TGGTTAAATG 241 ATGCAAGTGC TTCATCACTT TCATAAAGCA TTTGAACAAT ATTATATATT TGTGCAGAAG 301 AGAGCTACTT CCTAATGGAT ATTATATGCA TCAAAAGATT CACATTACTC GATTTTCAAA 361 GCAGCAAGAA TGTATCGAAT GGAGCTACAA ACTATCAACA CTTTAGTTAA TGGGGAAATT 421 GATTATGAAG ATTTACAATC AAAGTTACTT GTCAACAAGA ACAAACCAGC TATCATCAAT 481 ATCAATATTG GTAAAAATAC ATACATATAT ATTCTTACAT CTTATAACAT CACTTTTGGT 541 AAATTAGTAT ATATGTGTTT ATAGGAACAA CCTTCAAAAG AGCTATTGAT GACCTCGATT 601 TCGTCATA Predicted gene structure (within gDNA segment 65878 to 73155): Exon 1 67452 67539 ( 88 n); cDNA 84 171 ( 88 n); score: 0.932 Intron 1 67540 69282 (1743 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0) Exon 2 69283 69298 ( 16 n); cDNA 172 186 ( 15 n); score: 0.750 Intron 2 69299 71519 (2221 n); Pd: 0.855 (s: 0), Pa: 0.000 (s: 0) Exon 3 71520 71556 ( 37 n); cDNA 187 221 ( 35 n); score: 0.757 MATCH C04HBa0077O05.1+ SGN-E251501+ 0.932 141 0.232 C PGS_C04HBa0077O05.1+_SGN-E251501+ (67452 67539,69283 69298,71520 71556) Alignment (genomic DNA sequence = upper lines): GGTGCATCGA AACTCAAATT GATGTCTTAC CCTTTTGGTG CGATAGAACT TGAATCTATC 67511 |||||||| | ||||| |||| |||||||||| ||| |||||| |||||||||| |||||||| | GGTGCATCAA AACTCGAATT GATGTCTTAC CCTCTTGGTG CGATAGAACT TGAATCTACC 143 GTCTTATCCT CAAATATTTT TCATTATGGT GCATCCGGAC TTTAACCTGA TGTCTTACCC 67571 |||||| ||| |||||||||| |||| ||| GTCTTACCCT CAAATATTTT TCATAATG.. .......... .......... .......... 171 TTTTGGTGCG ATGAAACTTG AATTCATCGT CTTACCCTTA ACCAACGGTA TAATAAATCG 67631 .......... .......... .......... .......... .......... .......... 171 AAGTACAACA TGACTCATCC TTTGAGTCTT TCAAAACAAT CAAAATAACA TTCAAATTCA 67691 .......... .......... .......... .......... .......... .......... 171 TGCTATTAAA ATTTTATACC TTCTTCTATT TAAGAAATTT TGTATAGCAT GTCATATTCA 67751 .......... .......... .......... .......... .......... .......... 171 ACCAATAGTA GTATATGTCT TCGATTCCTG ATAATTGTTA GTGACTGAAT ACTATTTTAT 67811 .......... .......... .......... .......... .......... .......... 171 TCTAAATCAT AAAAATATTC TAGAAAATAC ATACCTGATT TTATGCATAT AATACCTTGA 67871 .......... .......... .......... .......... .......... .......... 171 TTCTTATAAC GAGATCAACC AAAAACATGA GTTAAAGAAA AAGTAAAACT CAATCTTAAT 67931 .......... .......... .......... .......... .......... .......... 171 TGGCTAGAGA CTCGTGCTGA TAACGTGTTA TAAAATCAAG CTCATGGCAA TATAAATATA 67991 .......... .......... .......... .......... .......... .......... 171 AAGAGATGAA GACAAGAGGA GTAAGATGGA AGATAAGACT TTCTTCTTAT TCAAGTGTAT 68051 .......... .......... .......... .......... .......... .......... 171 GCAAATCTCA TATGTATCTA TATTACAATA GTGAATGAAC AACCCTATTT ATAGAGTGAG 68111 .......... .......... .......... .......... .......... .......... 171 AAATCACTCC AAAGGTCACC ATATTAAGTA TCATAATAAA TAGATACATT CTTATCCAAA 68171 .......... .......... .......... .......... .......... .......... 171 AAGGTTCATG TAACCTAGTG AATATGAATG GTTGTTCATG TACCAACCTT ATGGACTATC 68231 .......... .......... .......... .......... .......... .......... 171 CACTCATTCA ATGAATTTAT AACAGGTATT ACATTATTAG TGCCTAACAT ATATTTTAGC 68291 .......... .......... .......... .......... .......... .......... 171 TAATTAGAAA AACTAAAGAA TTCCTATATT TTTTTCAATA ACCTTAATCC AATTCTCTAA 68351 .......... .......... .......... .......... .......... .......... 171 CTTGTGAACC TCTAACGTCA TTCATATTTT TTTCGATAGC TATGACTCTT CCCATAACAT 68411 .......... .......... .......... .......... .......... .......... 171 ATGTATTGTA TAATGACTCT TTCTATCCAA AAACATCTAA TTTTTTCATA TATTCTTCAA 68471 .......... .......... .......... .......... .......... .......... 171 AATGTGGGTG CACTATTTTT TTAATCCATA ACTCTAAAGT AATAATCATC TTCTCATCAA 68531 .......... .......... .......... .......... .......... .......... 171 TTTCCAATTG AAATGAGTAA GTTTTTTTTT TCCAAAAACT TATTTTTTCC AGCTGAAACA 68591 .......... .......... .......... .......... .......... .......... 171 AAAGATTGAG ATGAAAAATT ATTAGGAGCT CTATTATCAT GTCAACTAGT TCAACAATAA 68651 .......... .......... .......... .......... .......... .......... 171 GAATATTTAA GTGTTATCTC ACAAATATGT TTAATTATCG AAGAGTCTCA ATGAAATTAT 68711 .......... .......... .......... .......... .......... .......... 171 TGGCCTAATT CAAAATTCTA ATAAGAAACA TCAAATATGT ATACATGGTC ATTATTTTTA 68771 .......... .......... .......... .......... .......... .......... 171 ATTATGGATA GTATTTTTTC ACTCAAAAAT CTTGATCAAC ATCAATACAC TAAAGTATTA 68831 .......... .......... .......... .......... .......... .......... 171 TTGCAATAAG TGTTCTTACC AAACATCAAT ACACTCTAAG AAAATTATTA ATATAAAAAA 68891 .......... .......... .......... .......... .......... .......... 171 GTGACTTGTA AAGATTATGA AAATTTGAAA ATTATTAATA TAAAAAAATA CTTGTAAATA 68951 .......... .......... .......... .......... .......... .......... 171 TTACGAAAAT TTACTCGTTC AAGAGGAAAA AATTGATATT TGATTGAAAA AGAAAAGACG 69011 .......... .......... .......... .......... .......... .......... 171 AAAATTTGTA GTTGTGAGAG TTAAAGTTAT GCAAAGACCG AGGGAGACGA TACCGATATT 69071 .......... .......... .......... .......... .......... .......... 171 AATTTATAAC TTATTAAATA AGTCTGAATG TTGTTATGAT TCTCCTACGG GTCTTATCAG 69131 .......... .......... .......... .......... .......... .......... 171 TTCAGACCTT TTCAGATTCA TTAGGAGGTT TTTTGAAAGA AAAAAAACAA ACGGGCTTAA 69191 .......... .......... .......... .......... .......... .......... 171 TGGGTTGAAT TTAAATCATT CATATTCAGA CTTAAAAATC ACACACACTT AATTGGTTGA 69251 .......... .......... .......... .......... .......... .......... 171 ATCTGAATGA TTAAGATTCA GATTTCCATT AAGTGCAAAC AAATGAGGTC TAAATATTTT 69311 | || | | ||||||| .......... .......... .......... .AATG-ACAT AAATGAG... .......... 186 TTTTTTCATT TAATTTGAAA GTTATATAAT AGGTGTTGAT AATTAAATTG TATTTTAAAG 69371 .......... .......... .......... .......... .......... .......... 186 AAAAAAGAGT AGACATATTT AATAATATCT ATTTTAATTG TCTCATTAAA AATAATATAA 69431 .......... .......... .......... .......... .......... .......... 186 GAAAAATTAG GTGGGACAAA ATCTTGTAAA GGTAAAACAG TACAATTTGT ATGAACTTTC 69491 .......... .......... .......... .......... .......... .......... 186 CCTAAGGAAA AATTCGGCGT GACAAAACCT TTAAAGTTTT GAATTTTAAT CTTGTGCATT 69551 .......... .......... .......... .......... .......... .......... 186 ATCCTCTTCA AAATTGCACT TGATTAAGGT TTGATGAATA AATAAGTTAT ATTATTATTG 69611 .......... .......... .......... .......... .......... .......... 186 GAATAAATTT ATTGCACGTT TATATCAACA TTCTTTTAGA GATCACGTGA AGAGAAAAGT 69671 .......... .......... .......... .......... .......... .......... 186 TTTGGTGAAG TGTGTTTCGT CCTATTTCTT TTTATGAATT CTCACTTTAC TTGGATTATG 69731 .......... .......... .......... .......... .......... .......... 186 CATGTAACAT TATCTTCATA TAAGTCTAGA GTATTTTGTC ACATTTCAAA ATGCATTTTT 69791 .......... .......... .......... .......... .......... .......... 186 CTCAAATGAG ATGTACCAAC TCAACCACAT ATTTCGAATT GCTTCATGAA TAGCTATTTC 69851 .......... .......... .......... .......... .......... .......... 186 AACATGATTT GATGAAATAG TAATGATAGA CTATTGACTA TTTTGTAGAT CGCCAAGATA 69911 .......... .......... .......... .......... .......... .......... 186 TAACAGTATC CCCACATATG AACATGTAGC TTATTTGAGA TTGTAATTTG TGCGAATTAA 69971 .......... .......... .......... .......... .......... .......... 186 ATATATTTTG CATCAATGTA ACCAACAAGA TCGGTTTCTT TGATTCCATT CCAATGTCCC 70031 .......... .......... .......... .......... .......... .......... 186 TTGGTAGGAG TGATAACGCC AGTACTTTCA ACAAAATGAC ATGACTAGAA AATAAATAAA 70091 .......... .......... .......... .......... .......... .......... 186 ACCTTAGAGA CTGATAACAA TTGAACGAAA CACGCAATTT GCGGAATCAA TAAATTTGTT 70151 .......... .......... .......... .......... .......... .......... 186 TCATTAGTTA GATTGTAAAC ATAAATTAAA ATAAACTACA TCATATAAAA TCACAGTGTA 70211 .......... .......... .......... .......... .......... .......... 186 TGATTCTATC TTGTTTTAGA ATATAGGTCT CAATGTTTGG TGGTTGAATC TTCTTAAATT 70271 .......... .......... .......... .......... .......... .......... 186 TTTTTATTTT TCTTGACTAC TTCAAGAAGA AGATGGGGGT GAGGGTCTTG TTTTTTTAAT 70331 .......... .......... .......... .......... .......... .......... 186 AAAGAGAAAA ATCTCATTGG AAGGCCCTAT TTGGTAAATG CAATAAAATC ATATTAGATA 70391 .......... .......... .......... .......... .......... .......... 186 AAGTTGAAAT TTTATTTGGA CTATAAATTA ATGGGCCAAT TTTTGTATTT GAAAAATATA 70451 .......... .......... .......... .......... .......... .......... 186 AATCATAATA TGAAATTCTC AAATCAAGAT TTTTGAATAA CTTGAAAGTT CATATCATAA 70511 .......... .......... .......... .......... .......... .......... 186 TTTACAATCA TAAAATAAAA TCATATGTCC AAATATTGAT TTTATCTCAA GTCCAAACCC 70571 .......... .......... .......... .......... .......... .......... 186 TTGCTTAAGG TCTAAGTGTA CATTATAGTC CTATCAATTG TGTTCCTTTT TTATTTTCAT 70631 .......... .......... .......... .......... .......... .......... 186 ATAAGAATAT ATTACTTATT TAATTTACAT GAATCTCTCT CGATTTAATC ACATAAATAA 70691 .......... .......... .......... .......... .......... .......... 186 TTTAATTTAA TTTTTTTAAA ATTATTTTCC TTATTCACCA ATCAAACGAT CTAGAGTTAT 70751 .......... .......... .......... .......... .......... .......... 186 TATTAAGGTT TGGCCATAAC TTTATTCTAC CAAACTATGG TATGGTTCAA TTCAAGAATC 70811 .......... .......... .......... .......... .......... .......... 186 AATGAAAAAT GGGGACCAAA TTAATGTGTG GGCAAATAAT AGTATATAAT TGCTAACTGC 70871 .......... .......... .......... .......... .......... .......... 186 ATCTTGGGAG ATGATTCATT GTCCCTTTTG ACCCTACACT ATGCTTAATC TTGTCACACT 70931 .......... .......... .......... .......... .......... .......... 186 ATTATAAAGT TTTGAACAAT TGTTGTTTTT TTCTTTTTAC AATTCAAATA ATCTACCAAA 70991 .......... .......... .......... .......... .......... .......... 186 GATGATTAAA AATGATTTTA ATTCTGGAAA TTACATAAGG TGCCCCTTAA ATGTAGTGAG 71051 .......... .......... .......... .......... .......... .......... 186 CTTAATTTTT TTGTCTTTAG CAAAAAAATT ATTAAAGAAT AATCTTCCTT CCATTTTAAG 71111 .......... .......... .......... .......... .......... .......... 186 CAGAGTTAAA ATATATTTCA AAGAGAAATG CATATTTTTT GTGAGGAGAT TGTTTGTACT 71171 .......... .......... .......... .......... .......... .......... 186 ATATGAGAGG AGTACATTAT AATTTGTATT TAATTTTATT TTTTATTGAA TTAAAAAAGT 71231 .......... .......... .......... .......... .......... .......... 186 TTGATCGATA AGTGTTATAT CTTTTTAGAA TAACTTTATG ATAGTGTATT ATATTTTGTT 71291 .......... .......... .......... .......... .......... .......... 186 ATGAACTTAT GCTTATTTTG TAATATTGTG TAAATGATTG AGGCAATTTT GATAACTTAT 71351 .......... .......... .......... .......... .......... .......... 186 GAAAATTTGT CTTTATGAGC AAAAAATGCA ACTTAAAATT TCAAATTGAA TATCCAAACA 71411 .......... .......... .......... .......... .......... .......... 186 AAAACTTCAA TTTCATTACA TATTTCATCT TGTATACTAT GTATTATACA TTATATATTT 71471 .......... .......... .......... .......... .......... .......... 186 CATATAAATT ATACATATAT ATTTATTCTT ATTTGGTTTT ACATGTACTC TTTTTTAAAT 71531 || ||||||||| .......... .......... .......... .......... ........TC TTTTTTAAAC 198 TAATTTAGAC ACCTTCTTTT CAGTT 71556 ||||| || | | | ||| |||| AAATTT-GAT AACAT-ATTT GAGTT 221 hqPGS_C04HBa0077O05.1+_SGN-E251501+ (67452 67539,69283 69298,71520 71556) ******************************************************************************** EST sequence 83 +strand 584 n (File: SGN-E256408+) 1 GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 61 TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTCGAATT GATGTCTTAC 121 CCTCTTGGTG CGATAGAACT TGAATCTACC GTCTTACCCT CAAATATTTT TCATAATGAA 181 TGACATAAAT GAGTCTTTTT TAAACAAATT TGATAACATA TTTGAGTTTT TTTCTTATGG 241 TTAAATGATG CAAGTGCTTC ATCACTTTCA TAAAGCATTT GAACAATATT ATATATTTGT 301 GCAGAAGAGA GCTACTTCCT AATGGATATT ATATGCATCA AAAGATTCAC ATTACTCGAT 361 TTTCAAAGCA GCAAGAATGT ATCGAATGGA GCTACAAACT ATCAACACTT TAGTTAATGG 421 GGAAATTGAT TATGAAGATT TACAATCAAA GTTACTTGTC AACAAGAACA AACCAGCTAT 481 CATCAATATC AATATTGGAA CAACCTTCAA AGGAGCTATT GATGACCTCG ATTTCGTCAT 541 ACAAACACTT GAAAATTGTG GTTATTCAAA TGACAATTAT TATA Predicted gene structure (within gDNA segment 65808 to 72245): Exon 1 67452 67539 ( 88 n); cDNA 91 178 ( 88 n); score: 0.932 Intron 1 67540 69282 (1743 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0) Exon 2 69283 69298 ( 16 n); cDNA 179 193 ( 15 n); score: 0.750 Intron 2 69299 71519 (2221 n); Pd: 0.855 (s: 0), Pa: 0.000 (s: 0) Exon 3 71520 71556 ( 37 n); cDNA 194 228 ( 35 n); score: 0.757 MATCH C04HBa0077O05.1+ SGN-E256408+ 0.932 141 0.241 C PGS_C04HBa0077O05.1+_SGN-E256408+ (67452 67539,69283 69298,71520 71556) Alignment (genomic DNA sequence = upper lines): GGTGCATCGA AACTCAAATT GATGTCTTAC CCTTTTGGTG CGATAGAACT TGAATCTATC 67511 |||||||| | ||||| |||| |||||||||| ||| |||||| |||||||||| |||||||| | GGTGCATCAA AACTCGAATT GATGTCTTAC CCTCTTGGTG CGATAGAACT TGAATCTACC 150 GTCTTATCCT CAAATATTTT TCATTATGGT GCATCCGGAC TTTAACCTGA TGTCTTACCC 67571 |||||| ||| |||||||||| |||| ||| GTCTTACCCT CAAATATTTT TCATAATG.. .......... .......... .......... 178 TTTTGGTGCG ATGAAACTTG AATTCATCGT CTTACCCTTA ACCAACGGTA TAATAAATCG 67631 .......... .......... .......... .......... .......... .......... 178 AAGTACAACA TGACTCATCC TTTGAGTCTT TCAAAACAAT CAAAATAACA TTCAAATTCA 67691 .......... .......... .......... .......... .......... .......... 178 TGCTATTAAA ATTTTATACC TTCTTCTATT TAAGAAATTT TGTATAGCAT GTCATATTCA 67751 .......... .......... .......... .......... .......... .......... 178 ACCAATAGTA GTATATGTCT TCGATTCCTG ATAATTGTTA GTGACTGAAT ACTATTTTAT 67811 .......... .......... .......... .......... .......... .......... 178 TCTAAATCAT AAAAATATTC TAGAAAATAC ATACCTGATT TTATGCATAT AATACCTTGA 67871 .......... .......... .......... .......... .......... .......... 178 TTCTTATAAC GAGATCAACC AAAAACATGA GTTAAAGAAA AAGTAAAACT CAATCTTAAT 67931 .......... .......... .......... .......... .......... .......... 178 TGGCTAGAGA CTCGTGCTGA TAACGTGTTA TAAAATCAAG CTCATGGCAA TATAAATATA 67991 .......... .......... .......... .......... .......... .......... 178 AAGAGATGAA GACAAGAGGA GTAAGATGGA AGATAAGACT TTCTTCTTAT TCAAGTGTAT 68051 .......... .......... .......... .......... .......... .......... 178 GCAAATCTCA TATGTATCTA TATTACAATA GTGAATGAAC AACCCTATTT ATAGAGTGAG 68111 .......... .......... .......... .......... .......... .......... 178 AAATCACTCC AAAGGTCACC ATATTAAGTA TCATAATAAA TAGATACATT CTTATCCAAA 68171 .......... .......... .......... .......... .......... .......... 178 AAGGTTCATG TAACCTAGTG AATATGAATG GTTGTTCATG TACCAACCTT ATGGACTATC 68231 .......... .......... .......... .......... .......... .......... 178 CACTCATTCA ATGAATTTAT AACAGGTATT ACATTATTAG TGCCTAACAT ATATTTTAGC 68291 .......... .......... .......... .......... .......... .......... 178 TAATTAGAAA AACTAAAGAA TTCCTATATT TTTTTCAATA ACCTTAATCC AATTCTCTAA 68351 .......... .......... .......... .......... .......... .......... 178 CTTGTGAACC TCTAACGTCA TTCATATTTT TTTCGATAGC TATGACTCTT CCCATAACAT 68411 .......... .......... .......... .......... .......... .......... 178 ATGTATTGTA TAATGACTCT TTCTATCCAA AAACATCTAA TTTTTTCATA TATTCTTCAA 68471 .......... .......... .......... .......... .......... .......... 178 AATGTGGGTG CACTATTTTT TTAATCCATA ACTCTAAAGT AATAATCATC TTCTCATCAA 68531 .......... .......... .......... .......... .......... .......... 178 TTTCCAATTG AAATGAGTAA GTTTTTTTTT TCCAAAAACT TATTTTTTCC AGCTGAAACA 68591 .......... .......... .......... .......... .......... .......... 178 AAAGATTGAG ATGAAAAATT ATTAGGAGCT CTATTATCAT GTCAACTAGT TCAACAATAA 68651 .......... .......... .......... .......... .......... .......... 178 GAATATTTAA GTGTTATCTC ACAAATATGT TTAATTATCG AAGAGTCTCA ATGAAATTAT 68711 .......... .......... .......... .......... .......... .......... 178 TGGCCTAATT CAAAATTCTA ATAAGAAACA TCAAATATGT ATACATGGTC ATTATTTTTA 68771 .......... .......... .......... .......... .......... .......... 178 ATTATGGATA GTATTTTTTC ACTCAAAAAT CTTGATCAAC ATCAATACAC TAAAGTATTA 68831 .......... .......... .......... .......... .......... .......... 178 TTGCAATAAG TGTTCTTACC AAACATCAAT ACACTCTAAG AAAATTATTA ATATAAAAAA 68891 .......... .......... .......... .......... .......... .......... 178 GTGACTTGTA AAGATTATGA AAATTTGAAA ATTATTAATA TAAAAAAATA CTTGTAAATA 68951 .......... .......... .......... .......... .......... .......... 178 TTACGAAAAT TTACTCGTTC AAGAGGAAAA AATTGATATT TGATTGAAAA AGAAAAGACG 69011 .......... .......... .......... .......... .......... .......... 178 AAAATTTGTA GTTGTGAGAG TTAAAGTTAT GCAAAGACCG AGGGAGACGA TACCGATATT 69071 .......... .......... .......... .......... .......... .......... 178 AATTTATAAC TTATTAAATA AGTCTGAATG TTGTTATGAT TCTCCTACGG GTCTTATCAG 69131 .......... .......... .......... .......... .......... .......... 178 TTCAGACCTT TTCAGATTCA TTAGGAGGTT TTTTGAAAGA AAAAAAACAA ACGGGCTTAA 69191 .......... .......... .......... .......... .......... .......... 178 TGGGTTGAAT TTAAATCATT CATATTCAGA CTTAAAAATC ACACACACTT AATTGGTTGA 69251 .......... .......... .......... .......... .......... .......... 178 ATCTGAATGA TTAAGATTCA GATTTCCATT AAGTGCAAAC AAATGAGGTC TAAATATTTT 69311 | || | | ||||||| .......... .......... .......... .AATG-ACAT AAATGAG... .......... 193 TTTTTTCATT TAATTTGAAA GTTATATAAT AGGTGTTGAT AATTAAATTG TATTTTAAAG 69371 .......... .......... .......... .......... .......... .......... 193 AAAAAAGAGT AGACATATTT AATAATATCT ATTTTAATTG TCTCATTAAA AATAATATAA 69431 .......... .......... .......... .......... .......... .......... 193 GAAAAATTAG GTGGGACAAA ATCTTGTAAA GGTAAAACAG TACAATTTGT ATGAACTTTC 69491 .......... .......... .......... .......... .......... .......... 193 CCTAAGGAAA AATTCGGCGT GACAAAACCT TTAAAGTTTT GAATTTTAAT CTTGTGCATT 69551 .......... .......... .......... .......... .......... .......... 193 ATCCTCTTCA AAATTGCACT TGATTAAGGT TTGATGAATA AATAAGTTAT ATTATTATTG 69611 .......... .......... .......... .......... .......... .......... 193 GAATAAATTT ATTGCACGTT TATATCAACA TTCTTTTAGA GATCACGTGA AGAGAAAAGT 69671 .......... .......... .......... .......... .......... .......... 193 TTTGGTGAAG TGTGTTTCGT CCTATTTCTT TTTATGAATT CTCACTTTAC TTGGATTATG 69731 .......... .......... .......... .......... .......... .......... 193 CATGTAACAT TATCTTCATA TAAGTCTAGA GTATTTTGTC ACATTTCAAA ATGCATTTTT 69791 .......... .......... .......... .......... .......... .......... 193 CTCAAATGAG ATGTACCAAC TCAACCACAT ATTTCGAATT GCTTCATGAA TAGCTATTTC 69851 .......... .......... .......... .......... .......... .......... 193 AACATGATTT GATGAAATAG TAATGATAGA CTATTGACTA TTTTGTAGAT CGCCAAGATA 69911 .......... .......... .......... .......... .......... .......... 193 TAACAGTATC CCCACATATG AACATGTAGC TTATTTGAGA TTGTAATTTG TGCGAATTAA 69971 .......... .......... .......... .......... .......... .......... 193 ATATATTTTG CATCAATGTA ACCAACAAGA TCGGTTTCTT TGATTCCATT CCAATGTCCC 70031 .......... .......... .......... .......... .......... .......... 193 TTGGTAGGAG TGATAACGCC AGTACTTTCA ACAAAATGAC ATGACTAGAA AATAAATAAA 70091 .......... .......... .......... .......... .......... .......... 193 ACCTTAGAGA CTGATAACAA TTGAACGAAA CACGCAATTT GCGGAATCAA TAAATTTGTT 70151 .......... .......... .......... .......... .......... .......... 193 TCATTAGTTA GATTGTAAAC ATAAATTAAA ATAAACTACA TCATATAAAA TCACAGTGTA 70211 .......... .......... .......... .......... .......... .......... 193 TGATTCTATC TTGTTTTAGA ATATAGGTCT CAATGTTTGG TGGTTGAATC TTCTTAAATT 70271 .......... .......... .......... .......... .......... .......... 193 TTTTTATTTT TCTTGACTAC TTCAAGAAGA AGATGGGGGT GAGGGTCTTG TTTTTTTAAT 70331 .......... .......... .......... .......... .......... .......... 193 AAAGAGAAAA ATCTCATTGG AAGGCCCTAT TTGGTAAATG CAATAAAATC ATATTAGATA 70391 .......... .......... .......... .......... .......... .......... 193 AAGTTGAAAT TTTATTTGGA CTATAAATTA ATGGGCCAAT TTTTGTATTT GAAAAATATA 70451 .......... .......... .......... .......... .......... .......... 193 AATCATAATA TGAAATTCTC AAATCAAGAT TTTTGAATAA CTTGAAAGTT CATATCATAA 70511 .......... .......... .......... .......... .......... .......... 193 TTTACAATCA TAAAATAAAA TCATATGTCC AAATATTGAT TTTATCTCAA GTCCAAACCC 70571 .......... .......... .......... .......... .......... .......... 193 TTGCTTAAGG TCTAAGTGTA CATTATAGTC CTATCAATTG TGTTCCTTTT TTATTTTCAT 70631 .......... .......... .......... .......... .......... .......... 193 ATAAGAATAT ATTACTTATT TAATTTACAT GAATCTCTCT CGATTTAATC ACATAAATAA 70691 .......... .......... .......... .......... .......... .......... 193 TTTAATTTAA TTTTTTTAAA ATTATTTTCC TTATTCACCA ATCAAACGAT CTAGAGTTAT 70751 .......... .......... .......... .......... .......... .......... 193 TATTAAGGTT TGGCCATAAC TTTATTCTAC CAAACTATGG TATGGTTCAA TTCAAGAATC 70811 .......... .......... .......... .......... .......... .......... 193 AATGAAAAAT GGGGACCAAA TTAATGTGTG GGCAAATAAT AGTATATAAT TGCTAACTGC 70871 .......... .......... .......... .......... .......... .......... 193 ATCTTGGGAG ATGATTCATT GTCCCTTTTG ACCCTACACT ATGCTTAATC TTGTCACACT 70931 .......... .......... .......... .......... .......... .......... 193 ATTATAAAGT TTTGAACAAT TGTTGTTTTT TTCTTTTTAC AATTCAAATA ATCTACCAAA 70991 .......... .......... .......... .......... .......... .......... 193 GATGATTAAA AATGATTTTA ATTCTGGAAA TTACATAAGG TGCCCCTTAA ATGTAGTGAG 71051 .......... .......... .......... .......... .......... .......... 193 CTTAATTTTT TTGTCTTTAG CAAAAAAATT ATTAAAGAAT AATCTTCCTT CCATTTTAAG 71111 .......... .......... .......... .......... .......... .......... 193 CAGAGTTAAA ATATATTTCA AAGAGAAATG CATATTTTTT GTGAGGAGAT TGTTTGTACT 71171 .......... .......... .......... .......... .......... .......... 193 ATATGAGAGG AGTACATTAT AATTTGTATT TAATTTTATT TTTTATTGAA TTAAAAAAGT 71231 .......... .......... .......... .......... .......... .......... 193 TTGATCGATA AGTGTTATAT CTTTTTAGAA TAACTTTATG ATAGTGTATT ATATTTTGTT 71291 .......... .......... .......... .......... .......... .......... 193 ATGAACTTAT GCTTATTTTG TAATATTGTG TAAATGATTG AGGCAATTTT GATAACTTAT 71351 .......... .......... .......... .......... .......... .......... 193 GAAAATTTGT CTTTATGAGC AAAAAATGCA ACTTAAAATT TCAAATTGAA TATCCAAACA 71411 .......... .......... .......... .......... .......... .......... 193 AAAACTTCAA TTTCATTACA TATTTCATCT TGTATACTAT GTATTATACA TTATATATTT 71471 .......... .......... .......... .......... .......... .......... 193 CATATAAATT ATACATATAT ATTTATTCTT ATTTGGTTTT ACATGTACTC TTTTTTAAAT 71531 || ||||||||| .......... .......... .......... .......... ........TC TTTTTTAAAC 205 TAATTTAGAC ACCTTCTTTT CAGTT 71556 ||||| || | | | ||| |||| AAATTT-GAT AACAT-ATTT GAGTT 228 hqPGS_C04HBa0077O05.1+_SGN-E256408+ (67452 67539,69283 69298,71520 71556) ******************************************************************************** EST sequence 95 +strand 676 n (File: SGN-E542836+) 1 TTTTTTTTTT TTCAAACCTT CTATAGAGGT GAGTTGTGAC ATATATCCAA CCCATAATGA 61 TTTTATCACA TCTGGACCCA TTCTCTTATA GAATGGTCGA GCATTCACGA TACTCATTAC 121 AAGTCACATT CTCTTCAAAG ATTGGACTAA TTATTCATAT GTACTTTATA AATTTGCATT 181 ATAAGCACAT TGTCATGACT TTAAAATTCA TCATATTTCC ATGACACACC TCAACATCAC 241 TTTGAAAGAT AAAGTGTACC ATCACTTTAT CTTCTTATAT CATGATAGAG GATTTATAAA 301 CTTGTCAAGT TATTGGGTTG ACAACATTCA CAAGTCTAAT GACTTTTCAT ACCATTTTCA 361 TAATAAAAAT TGTCTTCACA TTTTGAAGGA CTATTTGAAG AACTCATATT GTTATTCCTT 421 TTATCATTAC CACAATGATG ACTATTATAA TTCTGTCCTT CCACGCCTTT ATTCATATCA 481 TTAATTATTT GTCATCTTTC AGACTAATCA TTCACTGCTA CCACATTCAT ATGATTGAAT 541 GGAGCAAGTC AACAGGCGGA TTTCAGAGTT ATCACATGTT GCTACCACAT TCTTTTCAAG 601 GAATGGAGCA AATTCAATAT GATGAATTTT CAGACATTTT CATCAAAAAT ATAATGATTT 661 TCTTAGTCAT CATTTT Predicted gene structure (within gDNA segment 65576 to 68624): Exon 1 66707 67345 ( 639 n); cDNA 1 647 ( 647 n); score: 0.906 MATCH C04HBa0077O05.1+ SGN-E542836+ 0.906 639 0.945 C PGS_C04HBa0077O05.1+_SGN-E542836+ (66707 67345) Alignment (genomic DNA sequence = upper lines): TTTATTTCCT CTCAAATCTC CCGTAGAGAT GAGAAGTGAC ATGTATCCAA CCCATAATTA 66766 ||| ||| | ||||| || | ||||| | ||| ||||| || ||||||| |||||||| | TTTTTTTTTT TTCAAACCTT CTATAGAGGT GAGTTGTGAC ATATATCCAA CCCATAATGA 60 TTTTATCACA TCTGGACCCA TTCTCTTATA GAATGATCGA GCATTCACGA TACTCATTAC 66826 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| TTTTATCACA TCTGGACCCA TTCTCTTATA GAATGGTCGA GCATTCACGA TACTCATTAC 120 AAGTCACATT CTCTTCAAGG ATTGGACTAA TTATTTATAT GTACTTCATA AATTTGCATT 66886 |||||||||| |||||||| | |||||||||| ||||| |||| |||||| ||| |||||||||| AAGTCACATT CTCTTCAAAG ATTGGACTAA TTATTCATAT GTACTTTATA AATTTGCATT 180 ATAAGCACAT TGTCATGACT TTAAAATTCA TCATATTTCC ATGACACACC TCAACATCAC 66946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAGCACAT TGTCATGACT TTAAAATTCA TCATATTTCC ATGACACACC TCAACATCAC 240 TTTGAAAGAT TAAGTGTACC ATCACTTTA- --TCTTGTAT CATGATAGAG GATTTATAAA 67003 |||||||||| ||||||||| ||||||||| |||| ||| |||||||||| |||||||||| TTTGAAAGAT AAAGTGTACC ATCACTTTAT CTTCTTATAT CATGATAGAG GATTTATAAA 300 TTTGTCAAAT TATTGGGTCG ACAACATTCA CAAGTCTAAT GACCTTTCAT ACCATTTTGA 67063 ||||||| | |||||||| | |||||||||| |||||||||| ||| |||||| |||||||| | CTTGTCAAGT TATTGGGTTG ACAACATTCA CAAGTCTAAT GACTTTTCAT ACCATTTTCA 360 TAATAAAAAT TGCCTTCACA TTTTGAAGGA CTATTTGAAG AACTCATAAT G---TTCCTT 67120 |||||||||| || ||||||| |||||||||| |||||||||| |||||||| | | |||||| TAATAAAAAT TGTCTTCACA TTTTGAAGGA CTATTTGAAG AACTCATATT GTTATTCCTT 420 TTATCATTAC CACAATGATG ACTATTATAA TTATGTCCCT TCACGCCCTT ATTCATATCA 67180 |||||||||| |||||||||| |||||||||| || ||||| | |||||| || |||||||||| TTATCATTAC CACAATGATG ACTATTATAA TTCTGTCCTT CCACGCCTTT ATTCATATCA 480 TTAATCATTT GTCATCTTTC AGACTAA-CA TTCACTGCTA CCACATTCAT ATGATTGAAT 67239 ||||| |||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| TTAATTATTT GTCATCTTTC AGACTAATCA TTCACTGCTA CCACATTCAT ATGATTGAAT 540 GGAGCAAGTT AACAGGCGGA TATCAGAGTT ATTACATGTT GCTACCACAT TCTTTTCAAG 67299 ||||||||| |||||||||| | |||||||| || ||||||| |||||||||| |||||||||| GGAGCAAGTC AACAGGCGGA TTTCAGAGTT ATCACATGTT GCTACCACAT TCTTTTCAAG 600 GAATGAAGCA AATTCAATAA AACGAATTTC AAGAC-TTTT CATCAAA 67345 ||||| |||| ||||||||| | |||||| |||| |||| ||||||| GAATGGAGCA AATTCAATAT GATGAATTTT CAGACATTTT CATCAAA 647 hqPGS_C04HBa0077O05.1+_SGN-E542836+ (66707 67345) ******************************************************************************** EST sequence 68 +strand 393 n (File: SGN-E204533+) 1 GAGAACTAGT CCGAGTTTTT TTTTTTTTTT TTTCAAAACC TTCTATAGAG GTGAGTTGTG 61 ACATATATCC AACCCATAAT GATTTTATCA CATCTGGACC CATTCTCTTA TAGAATGGTC 121 GAGCATTCAC GATACTCATT ACAAGTCACA TTCTCTTCAA AGATTGGACT AATTATTCAT 181 ATGTACTTTA TAAATTTGCA TTATAAGCAC ATTGTCATGA CTTTAAAATT CATCATATTT 241 CCATGACACA CCTCAACATC ACTTTGAAAG ATAAAGTGTA CCATCACTTT ATCTTCTTAT 301 ATCATGATAG AGGATTTATA AACTTGTCAA GTTATTGGGT TGACAACATT CACAAGTCTA 361 ATGACTTTTC ATACCATTTT CATAATAAAA ATT Predicted gene structure (within gDNA segment 65356 to 68323): Exon 1 66733 67074 ( 342 n); cDNA 49 393 ( 345 n); score: 0.931 PPA cDNA 33 15 MATCH C04HBa0077O05.1+ SGN-E204533+ 0.931 342 0.870 C PGS_C04HBa0077O05.1+_SGN-E204533+ (66733 67074) Alignment (genomic DNA sequence = upper lines): AGATGAGAAG TGACATGTAT CCAACCCATA ATTATTTTAT CACATCTGGA CCCATTCTCT 66792 || |||| | |||||| ||| |||||||||| || ||||||| |||||||||| |||||||||| AGGTGAGTTG TGACATATAT CCAACCCATA ATGATTTTAT CACATCTGGA CCCATTCTCT 108 TATAGAATGA TCGAGCATTC ACGATACTCA TTACAAGTCA CATTCTCTTC AAGGATTGGA 66852 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| TATAGAATGG TCGAGCATTC ACGATACTCA TTACAAGTCA CATTCTCTTC AAAGATTGGA 168 CTAATTATTT ATATGTACTT CATAAATTTG CATTATAAGC ACATTGTCAT GACTTTAAAA 66912 ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CTAATTATTC ATATGTACTT TATAAATTTG CATTATAAGC ACATTGTCAT GACTTTAAAA 228 TTCATCATAT TTCCATGACA CACCTCAACA TCACTTTGAA AGATTAAGTG TACCATCACT 66972 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| TTCATCATAT TTCCATGACA CACCTCAACA TCACTTTGAA AGATAAAGTG TACCATCACT 288 TTA---TCTT GTATCATGAT AGAGGATTTA TAAATTTGTC AAATTATTGG GTCGACAACA 67029 ||| |||| ||||||||| |||||||||| |||| ||||| || ||||||| || ||||||| TTATCTTCTT ATATCATGAT AGAGGATTTA TAAACTTGTC AAGTTATTGG GTTGACAACA 348 TTCACAAGTC TAATGACCTT TCATACCATT TTGATAATAA AAATT 67074 |||||||||| ||||||| || |||||||||| || ||||||| ||||| TTCACAAGTC TAATGACTTT TCATACCATT TTCATAATAA AAATT 393 hqPGS_C04HBa0077O05.1+_SGN-E204533+ (66733 67074) ******************************************************************************** EST sequence 272 -strand 767 n (File: SGN-E354965-) 1 AATGATTTTA TCACATTTGG ACCCATTCTT TTATAGAATG GTCGAGCATT CACGATACTC 61 ATCACAAGTC ACATTCTCTT CAAGGAATGA ACTAATTATT TATATGTACT TCATAAATTT 121 GCATTATAAG CACATTGTCA TGGCTTTAAA ATTCATCATA TTTCCATGAC ACACCTCAAC 181 ATCACTTTGA AAGATGAAGT GTACCATCAC TTTATCTTCT TGTGTCATGA TAGAGGATTT 241 ATAAACTTGT CAAATTATGG GGTTGACAAC ATTGACAAGT CTAATAACCT TTCATACCAT 301 TTTGATAATA AAAGTTGCCT TCACATTTTG AAGGACTATT TGAAGAACTC ATAGTGTTCT 361 TCCTTTTATC ATTACCACAA TGATGACTAT TATAATTCTT TCCCTCCACT CCCTTATTCT 421 ATATCATTAA TTATTTGTCA TCTTTCAAAC TAATCATTCA CTGCTACCAC ATTCATATGA 481 TTGAATGGAG CAAGTCAACA GGTGGATTTC AGAGTTATCA CATGTTGCTA CCATATTCTT 541 TTCAAGAAAT GGAGCAAATT CAATATGATG AATTTAAAGA CATTTCATCA AAAATATATT 601 ATTTTTCTTA GTCATCATTT TATGCATTGG ATCAAACTCA ATGTCTTACC CATGTAAGGC 661 GTGTTACGCC ATAATTCTAT GGAACTTGAA CCCAATCACG GTGTATCAAA ACTCTAATTG 721 ATGTCTTACC CTTTTGGTGA GATAGAACTT GAATCTATCG TCTTATC Predicted gene structure (within gDNA segment 65783 to 68119): Exon 1 66762 67519 ( 758 n); cDNA 1 767 ( 767 n); score: 0.889 MATCH C04HBa0077O05.1+ SGN-E354965- 0.889 758 0.988 C PGS_C04HBa0077O05.1+_SGN-E354965- (66762 67519) Alignment (genomic DNA sequence = upper lines): AATTATTTTA TCACATCTGG ACCCATTCTC TTATAGAATG ATCGAGCATT CACGATACTC 66821 ||| |||||| |||||| ||| ||||||||| |||||||||| ||||||||| |||||||||| AATGATTTTA TCACATTTGG ACCCATTCTT TTATAGAATG GTCGAGCATT CACGATACTC 60 ATTACAAGTC ACATTCTCTT CAAGGATTGG ACTAATTATT TATATGTACT TCATAAATTT 66881 || ||||||| |||||||||| |||||| || |||||||||| |||||||||| |||||||||| ATCACAAGTC ACATTCTCTT CAAGGAATGA ACTAATTATT TATATGTACT TCATAAATTT 120 GCATTATAAG CACATTGTCA TGACTTTAAA ATTCATCATA TTTCCATGAC ACACCTCAAC 66941 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| GCATTATAAG CACATTGTCA TGGCTTTAAA ATTCATCATA TTTCCATGAC ACACCTCAAC 180 ATCACTTTGA AAGATTAAGT GTACCATCAC TTTA---TCT TGTATCATGA TAGAGGATTT 66998 |||||||||| ||||| |||| |||||||||| |||| ||| ||| |||||| |||||||||| ATCACTTTGA AAGATGAAGT GTACCATCAC TTTATCTTCT TGTGTCATGA TAGAGGATTT 240 ATAAATTTGT CAAATTATTG GGTCGACAAC ATTCACAAGT CTAATGACCT TTCATACCAT 67058 ||||| |||| |||||||| | ||| |||||| ||| |||||| ||||| |||| |||||||||| ATAAACTTGT CAAATTATGG GGTTGACAAC ATTGACAAGT CTAATAACCT TTCATACCAT 300 TTTGATAATA AAAATTGCCT TCACATTTTG AAGGACTATT TGAAGAACTC ATAATGTT-- 67116 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| TTTGATAATA AAAGTTGCCT TCACATTTTG AAGGACTATT TGAAGAACTC ATAGTGTTCT 360 -CCTTTTATC ATTACCACAA TGATGACTAT TATAATTATG TCCCTTCACG CCCTTATTC- 67174 ||||||||| |||||||||| |||||||||| ||||||| | ||||| ||| ||||||||| TCCTTTTATC ATTACCACAA TGATGACTAT TATAATTCTT TCCCTCCACT CCCTTATTCT 420 ATATCATTAA TCATTTGTCA TCTTTCAGAC TAA-CATTCA CTGCTACCAC ATTCATATGA 67233 |||||||||| | |||||||| ||||||| || ||| |||||| |||||||||| |||||||||| ATATCATTAA TTATTTGTCA TCTTTCAAAC TAATCATTCA CTGCTACCAC ATTCATATGA 480 TTGAATGGAG CAAGTTAACA GGCGGATATC AGAGTTATTA CATGTTGCTA CCACATTCTT 67293 |||||||||| ||||| |||| || |||| || |||||||| | |||||||||| ||| |||||| TTGAATGGAG CAAGTCAACA GGTGGATTTC AGAGTTATCA CATGTTGCTA CCATATTCTT 540 TTCAAGGAAT GAAGCAAATT CAATAAAACG AATTTCAAGA CTTTTCATC- AAAGCCTAGT 67352 |||||| ||| | |||||||| ||||| | | ||||| |||| | ||||||| ||| || | TTCAAGAAAT GGAGCAAATT CAATATGATG AATTTAAAGA CATTTCATCA AAAATATATT 600 CATCATTATA -TCATCATTA TGGTGCATTG ACTCAAACTC AATGTCTTAT CCATATAAGG 67411 | | || |||||||| | ||||||| |||||||| ||||||||| |||| ||||| ATTTTTCTTA GTCATCATT- TTATGCATTG GATCAAACTC AATGTCTTAC CCATGTAAGG 659 CGTTTTACGC CATAATTCTA TGAGACTTGA ACCCAATCAC GGTGCATCGA AACTCAAATT 67471 ||| |||||| |||||||||| || |||||| |||||||||| |||| ||| | ||||| |||| CGTGTTACGC CATAATTCTA TGGAACTTGA ACCCAATCAC GGTGTATCAA AACTCTAATT 719 GATGTCTTAC CCTTTTGGTG CGATAGAACT TGAATCTATC GTCTTATC 67519 |||||||||| |||||||||| ||||||||| |||||||||| |||||||| GATGTCTTAC CCTTTTGGTG AGATAGAACT TGAATCTATC GTCTTATC 767 hqPGS_C04HBa0077O05.1+_SGN-E354965- (66762 67519) ******************************************************************************** EST sequence 35 +strand 281 n (File: SGN-E261191+) 1 GTGCATGGAG ACTCAAACTC AATGTCTTAT CCATACAAGG CACATTAGGC CATAATTCTA 61 TGGGACTTGA ACCCAATACC TTATCATTAT GGTGCATCAA AACTCGAATT GATGTCTTAC 121 CCTCTTGGTG CGATAGAACT TGAATCTACC GTCTTACCCT CAAATATTTT TCATAATGAA 181 TGACATAAAT GAGTCTTTTT TAACAAATTT GATAACATAT TTGAGTTTTT TTCTTATGGT 241 TAAATGATGC AAGTGCTTCA TCACTTTCAT AAAGCATTTG A Predicted gene structure (within gDNA segment 65808 to 69215): Exon 1 67452 67539 ( 88 n); cDNA 91 178 ( 88 n); score: 0.932 MATCH C04HBa0077O05.1+ SGN-E261191+ 0.932 88 0.313 C PGS_C04HBa0077O05.1+_SGN-E261191+ (67452 67539) Alignment (genomic DNA sequence = upper lines): GGTGCATCGA AACTCAAATT GATGTCTTAC CCTTTTGGTG CGATAGAACT TGAATCTATC 67511 |||||||| | ||||| |||| |||||||||| ||| |||||| |||||||||| |||||||| | GGTGCATCAA AACTCGAATT GATGTCTTAC CCTCTTGGTG CGATAGAACT TGAATCTACC 150 GTCTTATCCT CAAATATTTT TCATTATG 67539 |||||| ||| |||||||||| |||| ||| GTCTTACCCT CAAATATTTT TCATAATG 178 hqPGS_C04HBa0077O05.1+_SGN-E261191+ (67452 67539) ******************************************************************************** EST sequence 187 -strand 421 n (File: SGN-E338242-) 1 CGATGAAACT TGAATCAATC GTCTTACCCT TGACCAACGG TATAATAGAC CGAAGTACAA 61 CACGACTCAC CCTTTGAGTC TTTCAAAACA ATCAAAATAA CATTCAAACT CATGCTATTA 121 AAATTTTATA CCTTCTTCCA TTTAATAAGT TTTATATAGC ATGTCATATT CAACCAATAG 181 TAGTATATGT CTTCGGTTCC TGATAATTGC TAGTGACTGA ATACTATTTT ATTCTAAATC 241 ATAAAATATT TTAGAAAATA CATACCTGAT CTTATGCAAA TAATACCTTG ATTCTCATAT 301 CGAGATCAAC CAAAACATGA GTTAAAGAAA AAACTAAAAC TCACTCTCAA TTAGCTAGAG 361 ACTCGTGCTG ATAACGTGTT ATAAAAGAAC TTACTAAAAT TCTAAAAGAA AGAAAATATT 421 A Predicted gene structure (within gDNA segment 66340 to 68916): Exon 1 67580 67965 ( 386 n); cDNA 1 385 ( 385 n); score: 0.929 MATCH C04HBa0077O05.1+ SGN-E338242- 0.929 386 0.917 C PGS_C04HBa0077O05.1+_SGN-E338242- (67580 67965) Alignment (genomic DNA sequence = upper lines): CGATGAAACT TGAATTCATC GTCTTACCCT TAACCAACGG TATAATAAAT CGAAGTACAA 67639 |||||||||| ||||| ||| |||||||||| | |||||||| ||||||| | |||||||||| CGATGAAACT TGAATCAATC GTCTTACCCT TGACCAACGG TATAATAGAC CGAAGTACAA 60 CATGACTCAT CCTTTGAGTC TTTCAAAACA ATCAAAATAA CATTCAAATT CATGCTATTA 67699 || |||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| CACGACTCAC CCTTTGAGTC TTTCAAAACA ATCAAAATAA CATTCAAACT CATGCTATTA 120 AAATTTTATA CCTTCTTCTA TTTAAGAAAT TTTGTATAGC ATGTCATATT CAACCAATAG 67759 |||||||||| |||||||| | ||||| || | ||| |||||| |||||||||| |||||||||| AAATTTTATA CCTTCTTCCA TTTAATAAGT TTTATATAGC ATGTCATATT CAACCAATAG 180 TAGTATATGT CTTCGATTCC TGATAATTGT TAGTGACTGA ATACTATTTT ATTCTAAATC 67819 |||||||||| ||||| |||| ||||||||| |||||||||| |||||||||| |||||||||| TAGTATATGT CTTCGGTTCC TGATAATTGC TAGTGACTGA ATACTATTTT ATTCTAAATC 240 ATAAAAATAT TCTAGAAAAT ACATACCTGA TTTTATGCAT ATAATACCTT GATTCTTATA 67879 || ||||||| | |||||||| |||||||||| | ||||||| |||||||||| |||||| ||| AT-AAAATAT TTTAGAAAAT ACATACCTGA TCTTATGCAA ATAATACCTT GATTCTCATA 299 ACGAGATCAA CCAAAAACAT GAGTTAAAG- AAAAAGTAAA ACTCAATCTT AATTGGCTAG 67938 ||||||||| || ||||||| ||||||||| ||||| |||| ||||| ||| |||| ||||| TCGAGATCAA CC-AAAACAT GAGTTAAAGA AAAAACTAAA ACTCACTCTC AATTAGCTAG 358 AGACTCGTGC TGATAACGTG TTATAAA 67965 |||||||||| |||||||||| ||||||| AGACTCGTGC TGATAACGTG TTATAAA 385 hqPGS_C04HBa0077O05.1+_SGN-E338242- (67580 67965) ******************************************************************************** EST sequence 254 -strand 390 n (File: SGN-E548779-) 1 TATAATAGAC CGAAGTACAA CACGACTCAC CCTCTGAGTC TTTCAAAACA ATCAAAATAA 61 CATTCAAACT CATGCTATTA AAATTTTATA CCTTCTTCCA TTTAATAAGT TTTATATAGC 121 ATGTCATATT CAACCAATAG TAGTATATGT CTTCGGTTCC TGATAATTGC TAGTGACTGA 181 ATACTATTTT ATTCTAAATC ATAAAATATT TTAGAAAATA CATACCTGAT CTTATGCAAA 241 TAATACCTTG ATTCTCATAT CGAGATCAAC CAAAACATGA GTTAAAGAAA AAACTAAAAC 301 TCACTCTCAA TTAGCTAGAG ACTCGTGCTG ATAACGTGTT ATAAAAGAAC TTACTAAAAT 361 TCTAAAAAAA AAAAAAAAAC TCGAGACTAG Predicted gene structure (within gDNA segment 66704 to 69006): Exon 1 67620 67965 ( 346 n); cDNA 1 345 ( 345 n); score: 0.926 PPA cDNA 364 380 MATCH C04HBa0077O05.1+ SGN-E548779- 0.926 346 0.887 C PGS_C04HBa0077O05.1+_SGN-E548779- (67620 67965) Alignment (genomic DNA sequence = upper lines): TATAATAAAT CGAAGTACAA CATGACTCAT CCTTTGAGTC TTTCAAAACA ATCAAAATAA 67679 ||||||| | |||||||||| || |||||| ||| |||||| |||||||||| |||||||||| TATAATAGAC CGAAGTACAA CACGACTCAC CCTCTGAGTC TTTCAAAACA ATCAAAATAA 60 CATTCAAATT CATGCTATTA AAATTTTATA CCTTCTTCTA TTTAAGAAAT TTTGTATAGC 67739 |||||||| | |||||||||| |||||||||| |||||||| | ||||| || | ||| |||||| CATTCAAACT CATGCTATTA AAATTTTATA CCTTCTTCCA TTTAATAAGT TTTATATAGC 120 ATGTCATATT CAACCAATAG TAGTATATGT CTTCGATTCC TGATAATTGT TAGTGACTGA 67799 |||||||||| |||||||||| |||||||||| ||||| |||| ||||||||| |||||||||| ATGTCATATT CAACCAATAG TAGTATATGT CTTCGGTTCC TGATAATTGC TAGTGACTGA 180 ATACTATTTT ATTCTAAATC ATAAAAATAT TCTAGAAAAT ACATACCTGA TTTTATGCAT 67859 |||||||||| |||||||||| || ||||||| | |||||||| |||||||||| | ||||||| ATACTATTTT ATTCTAAATC AT-AAAATAT TTTAGAAAAT ACATACCTGA TCTTATGCAA 239 ATAATACCTT GATTCTTATA ACGAGATCAA CCAAAAACAT GAGTTAAAG- AAAAAGTAAA 67918 |||||||||| |||||| ||| ||||||||| || ||||||| ||||||||| ||||| |||| ATAATACCTT GATTCTCATA TCGAGATCAA CC-AAAACAT GAGTTAAAGA AAAAACTAAA 298 ACTCAATCTT AATTGGCTAG AGACTCGTGC TGATAACGTG TTATAAA 67965 ||||| ||| |||| ||||| |||||||||| |||||||||| ||||||| ACTCACTCTC AATTAGCTAG AGACTCGTGC TGATAACGTG TTATAAA 345 hqPGS_C04HBa0077O05.1+_SGN-E548779- (67620 67965) ******************************************************************************** EST sequence 298 -strand 360 n (File: SGN-E301830-) 1 CTTTCAAAAC AATCAAAATA ACATTCAAAC TCAGGCTATT AAAATTTTAC ACCTTCTTCC 61 ATTTAATAAG TTTTATATAG CATGTCATAT TCAACCAATA GTAGGTATAT GTCTTGGGGT 121 TCCTGATAAT GGCTAGGTGA CTGAATACTA TTTTATTCTA AATCATAAAA TATTTTAGAA 181 AATACATACC TGATCTTATG CAAATAATAC CTTGATTCTC ATATCGAGGA TCAACCAAAA 241 CATGGAGGTT AAAGAAAAAA CTAAAACTCA CTCTCAATTA GGCTAGAGAC TCGGTGCTGA 301 TAACGGTGGT TATAAAAGAA CTTACTAAAA TTCTAAAAAA AAAAAAAAAA CTCGAGACTA Predicted gene structure (within gDNA segment 65822 to 69885): Exon 1 67659 67955 ( 297 n); cDNA 1 304 ( 304 n); score: 0.854 PPA cDNA 335 351 MATCH C04HBa0077O05.1+ SGN-E301830- 0.854 297 0.825 C PGS_C04HBa0077O05.1+_SGN-E301830- (67659 67955) Alignment (genomic DNA sequence = upper lines): CTTTCAAAAC AATCAAAATA ACATTCAAAT TCATGCTATT AAAATTTTAT ACCTTCTTCT 67718 |||||||||| |||||||||| ||||||||| ||| |||||| ||||||||| ||||||||| CTTTCAAAAC AATCAAAATA ACATTCAAAC TCAGGCTATT AAAATTTTAC ACCTTCTTCC 60 ATTTAAGAAA TTTTGTATAG CATGTCATAT TCAACCAATA GTA-GTATAT GTCTT-CGAT 67776 |||||| || |||| ||||| |||||||||| |||||||||| ||| |||||| ||||| | | ATTTAATAAG TTTTATATAG CATGTCATAT TCAACCAATA GTAGGTATAT GTCTTGGGGT 120 TCCTGATAAT TGTTAG-TGA CTGAATACTA TTTTATTCTA AATCATAAAA ATATTCTAGA 67835 |||||||||| | ||| ||| |||||||||| |||||||||| |||||| ||| ||||| |||| TCCTGATAAT GGCTAGGTGA CTGAATACTA TTTTATTCTA AATCAT-AAA ATATTTTAGA 179 AAATACATAC CTGATTTTAT GCATATAATA CCTTGATTCT TATAACGA-G ATCAACCAAA 67894 |||||||||| ||||| |||| ||| |||||| |||||||||| ||| ||| | ||||||| || AAATACATAC CTGATCTTAT GCAAATAATA CCTTGATTCT CATATCGAGG ATCAACC-AA 238 AACAT-GA-G TTAAAG-AAA AAGTAAAACT CAATCTTAAT T-GGCTAGAG ACTC-GTGCT 67949 ||||| || | |||||| ||| || ||||||| || ||| ||| | |||||||| |||| ||||| AACATGGAGG TTAAAGAAAA AACTAAAACT CACTCTCAAT TAGGCTAGAG ACTCGGTGCT 298 GATAAC 67955 |||||| GATAAC 304 hqPGS_C04HBa0077O05.1+_SGN-E301830- (67659 67955) ******************************************************************************** EST sequence 31 +strand 667 n (File: SGN-E389613+) 1 TACATTACTG CAATCTCCAA ATCCAGCCAT AGATCCTTAG CATTGGACCA TTGGTAAAAG 61 TATTTAGTTA CAGATCCTTT TTTGCCTTTG GCAGCACTAA CTTATATACC TAATTAATTT 121 TGCCCCACAA TATGAAATGA GATAGCTTGC ATGCAACGCG TACCTGCTAC CTTCCACCAT 181 CACAAATCCA TAACCTGATA GTAATGAGTC AATGGAACCT TGACGGTGTT AGGACCAAAA 241 ATAAGCAGGT GTAAACGCGG AAGCTAGCAA AGCAAACCTC AAAAGACCAC GAGTAAGAAG 301 ACAACGAGAA ATATACCAAA AGATACAGAG ATTTAACGTG GTTCGGTCAA TTGACCTACG 361 TCCACAAAGG AGATGAGCAA TCCATTATAA ATATGAGAAT ACAAAATACA GAGAGAAACA 421 ACCTCAACCA AATTCACTCA GAATACATGA GAGATTCACA CAAGTGATAA CGTATCAAGA 481 AGCTTGTGAC TCATACCTCA ACGCATTATG TATGTGCAAA TCACAGGAGG AATGTACATT 541 CATGATCAGT TAAAAGTTAT AATAGAACAG GCAGAATAAA AGCAAAATAG AACATGATAA 601 TAATTTGTTA GAAACATTCT TGTACTCATC CAAATTAGTT GCAATGATTA CCTATTAGTA 661 ATATGAG Predicted gene structure (within gDNA segment 77436 to 84790): Exon 1 78363 78372 ( 10 n); cDNA 113 122 ( 10 n); score: 0.900 Intron 1 78373 79082 ( 710 n); Pd: 0.621 (s: 0), Pa: 0.000 (s: 0) Exon 2 79083 79107 ( 25 n); cDNA 123 146 ( 24 n); score: 0.720 Intron 2 79108 80051 ( 944 n); Pd: 0.498 (s: 0), Pa: 0.976 (s: 0) Exon 3 80052 80062 ( 11 n); cDNA 147 157 ( 11 n); score: 0.545 Intron 3 80063 81092 (1030 n); Pd: 0.808 (s: 0), Pa: 0.000 (s: 0.54) Exon 4 81093 81417 ( 325 n); cDNA 158 479 ( 322 n); score: 0.812 MATCH C04HBa0077O05.1+ SGN-E389613+ 0.812 371 0.556 C PGS_C04HBa0077O05.1+_SGN-E389613+ (78363 78372,79083 79107,80052 80062,81093 81417) Alignment (genomic DNA sequence = upper lines): ATTAATTTTT GTAATTGTCT CATTTACTTT AACCTTCATT CCTATCTTTA CTTCTTGTGG 78422 ||||||||| ATTAATTTTG .......... .......... .......... .......... .......... 122 TTTCACATCT TCATTAATAT TCTTTGAAGT AGGCATGAAT ATTGCCCACT CCTCAATCTC 78482 .......... .......... .......... .......... .......... .......... 122 CATTCTTGTT GACTCAAATA CTCTTTTCCA TGGAATTTCA AATCTCCCCA AGACTTGTGA 78542 .......... .......... .......... .......... .......... .......... 122 GCCACCAATG TATCTTCTTG ATCGTAGCTC GAAAATGATT GTTCCTTGCT TCATCATGTT 78602 .......... .......... .......... .......... .......... .......... 122 AATGGAGTCT TGAGTTCCCA TGCAATCCAA TGAGAAAGAT TCATCCCAAA ACAAGTTGGA 78662 .......... .......... .......... .......... .......... .......... 122 TTTTGATGAG ATTTCTTGAG TGTTTAGCTT AACTACTCTT TGATTGTTGT TTCCTGTTGG 78722 .......... .......... .......... .......... .......... .......... 122 AAGATAACAT CTAACAAACA AGTTGTTTTT CCCTAATGAA CTTTGGTTTA TGTTTCTTAA 78782 .......... .......... .......... .......... .......... .......... 122 TCTTATGATT TTTATTTCAC ACTTAATAGA TGAAAAATTA TCTTGAGTAG TAATAAATTT 78842 .......... .......... .......... .......... .......... .......... 122 CTCCATAGAA AAATATGGTT GTACTTTTGA TGGGGTTATT TTGGATGGTT TGTTTTGATG 78902 .......... .......... .......... .......... .......... .......... 122 ATGGGAAGCA TTTAATTATG AGGTATTTTA TAGTTGGAAA TTGTGCTAGC TTAACTTCAC 78962 .......... .......... .......... .......... .......... .......... 122 CTTGGTTTTA GTGGAAAGAA AGTGGTGTAA TTAGCTAGCT AGCTAGGATT ATAGTTATAT 79022 .......... .......... .......... .......... .......... .......... 122 ATAATAATAA TAATAATAAA ATGGAGTGAT AAAATATAAA AGAAAGTAAA CCACCCAAGT 79082 .......... .......... .......... .......... .......... .......... 122 CCCAACAATA TTAGATGGAG CTAAAGTAAA TCCTTTAATT TGAGAACCAT ATAAAAGATT 79142 ||| |||||| | | || ||| || CCCCACAATA TGAAAT-GAG ATAGC..... .......... .......... .......... 146 GCCTTTGTGA AAAATTCTTT AAAAAAACTC CTTGGACTCT TGAATGGTTA AAAAAAATGA 79202 .......... .......... .......... .......... .......... .......... 146 GTGAAAGGGT TTTTAGGATA AGTATTAATG ATGTGGAATG CATTTAGATG AAATTTTAAA 79262 .......... .......... .......... .......... .......... .......... 146 CTAGGGTAGT GGGTTTGTTA TTGAAATTAG GAGCGGTATT AAGTTATTTA ACCCATAAAA 79322 .......... .......... .......... .......... .......... .......... 146 TTACAACTCA CTAAAATTTA AAAGCTATTA AATTCCTTTT AAAATGAGAA AAATAACTAA 79382 .......... .......... .......... .......... .......... .......... 146 TGAAAGTTGA AAAAATAACA CTAAAATTTA AAAGCTATTA AGTTCCTTTT AAAATGAGAA 79442 .......... .......... .......... .......... .......... .......... 146 AAATAACTAA TGAAAGTTTA AAAAATAACA CTAAAATTCA AAAGCTATTA AATTCCTTTT 79502 .......... .......... .......... .......... .......... .......... 146 AAAATGAGAA AAATAACTAA TGAACGTTGA AAAATAAACA CTTTTAAATC ATAAACAGCC 79562 .......... .......... .......... .......... .......... .......... 146 CTCTAAACTT ATCTGTTTCC TTAGCTTTCA CACCTAATCT TTCACTTGTG TTTAGAGCAC 79622 .......... .......... .......... .......... .......... .......... 146 TTAAATTGCT CAAAAAATGT ATCAATTAAA CATGCGTACT ACGCTAATGG CATGTTAAAT 79682 .......... .......... .......... .......... .......... .......... 146 TGATAAATTA ATTAATGATA TGTAACAAAA ATTAATTGAT CACTATAAGA AAACTGTGAA 79742 .......... .......... .......... .......... .......... .......... 146 TTACATAGGA ATTTTTCTAG GGATTAGTAT GAAAATTTGC AGAAATTTAT TTTCCTGCAA 79802 .......... .......... .......... .......... .......... .......... 146 ATTTTCATAC TAATTTCTGG AAAAATCCCT ATATAATTCA CAATTTTCTT GTAGTGAATG 79862 .......... .......... .......... .......... .......... .......... 146 TAGTATGTTA ACTTTGAACG CTGTAGATTT AGTCAAAAAA AATCACAAAT TATTTTAGTC 79922 .......... .......... .......... .......... .......... .......... 146 ACTTCTCAGT TTTCACACAT CATTTAGGTT TCATACTCAA TTAAAATAGT GTTAAAGTGT 79982 .......... .......... .......... .......... .......... .......... 146 TTATCAAAAC TTATTCGATA AAAAGATTAC ACAGTTTTTA TGAGAATTTT TAATTTCTTT 80042 .......... .......... .......... .......... .......... .......... 146 TTTTATTAGA TCCCCTCAAC GCAAAAATTG ACCCCATATT CCCCACACTC CTACGTACTC 80102 | | |||| .........T TGCATGCAAC .......... .......... .......... .......... 157 TCCATTATAT TTCACCTCAT AATACTTGCT TAACCTATAG AAAATATTTT TACTAATTTA 80162 .......... .......... .......... .......... .......... .......... 157 TCGAATATAT ATATATATAT ATATATATAT ATATATATAT ATATATCAAC TTATATTTTA 80222 .......... .......... .......... .......... .......... .......... 157 GAAAAATATT TTTCTTCCTA ACAAACCCAC CCTAATTTTC AGTTTTTCTC TATTAATGTG 80282 .......... .......... .......... .......... .......... .......... 157 GTCCAAATAA TTAACATTTA CTAGAAGCAT ATAATGCAAT CTGACTGCTG TTTAATTTAT 80342 .......... .......... .......... .......... .......... .......... 157 TTTTTCTCAC TAATGTGCTT AGATGTCATT ACCCACAGAA ATTAAAATGG TGATCCATGA 80402 .......... .......... .......... .......... .......... .......... 157 TAAATGGCTT GTAAAAATGT ATTCCACTTT TGTAAAGCTA ACCCCAACAC CAAAAAGTTA 80462 .......... .......... .......... .......... .......... .......... 157 TATTTGAATA TACAATGCAG AAGAAAAATA TAGTTTTAAT AGTAGGCATT TGACAATGTA 80522 .......... .......... .......... .......... .......... .......... 157 ATTTGGAGTT TAATTTTAAT TTAAAATTAG TATTGTTTGT TTAGAATATT TGAACAAAAC 80582 .......... .......... .......... .......... .......... .......... 157 AATTATATTA AAAAAAATCG ATTTCAAATC TCATATTCCA CTAAAAGGTA GAATTTCAAT 80642 .......... .......... .......... .......... .......... .......... 157 TACAAGTTTG TGATTTCAAA TTTTTAAAAC AAATTTGAAT CATGAATTTA TATTTTATAT 80702 .......... .......... .......... .......... .......... .......... 157 ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT 80762 .......... .......... .......... .......... .......... .......... 157 ATAAAAAGAT CAACAATGTG AATAGATTGT TTGTGCCATG TTGGAGAATT ATATTAAGGA 80822 .......... .......... .......... .......... .......... .......... 157 ATGGCTAGTA GCTGCTATTG TTGATTTATT GGAATAACGG ATGCTTGTAA AATTATGTTT 80882 .......... .......... .......... .......... .......... .......... 157 ATATGAAAGT TTGTAAGAAT GTGTAATTTT AAATATTCAT TTATGAATAT GAAAGTTTGT 80942 .......... .......... .......... .......... .......... .......... 157 AAGAATATGT AATTTTAAAT ATTCATTTAT GAAAAAGATG TGTGATTTAC GATATTTTAA 81002 .......... .......... .......... .......... .......... .......... 157 AATATTTCGA CACTTTTGTT AGGATCGAAA ATAAGTAGGT GTGTAAATGC GGAAGCTAGC 81062 .......... .......... .......... .......... .......... .......... 157 AAAGCAAACC TCGAAAGATG AACACCTCCT TCTAACCTGG TTCAATCATC GATTATCGAA 81122 | ||||| | | || | || | | || .......... .......... .......... GCGTACCTGC TACCTTCCAC CATCA-CAAA 186 TCACTAACCT GAC-TCCATC ATTGAATCTG ACGCTGATAC CACTTGTTAG GATCGAAAAT 81181 || |||||| || || | | ||| | | || | | |||||| || | ||||| TCCATAACCT GATAGTAATG AGTCAAT-GG AACCT--TGA C-GGTGTTAG GACCAAAAAT 242 AAGTAGGTGT AAATGCGGAA GCTAGCAAAG CAAATCTCGA AAGATCACGA GTAAGAAGAC 81241 ||| |||||| ||| |||||| |||||||||| |||| ||| | |||| ||||| |||||||||| AAGCAGGTGT AAACGCGGAA GCTAGCAAAG CAAACCTCAA AAGACCACGA GTAAGAAGAC 302 AACGAGAAAT ATACCAAAAG ACACAAAGAT TTAACGTGGT TCAGTCAATC GACCTACATC 81301 |||||||||| |||||||||| | ||| |||| |||||||||| || |||||| ||||||| || AACGAGAAAT ATACCAAAAG ATACAGAGAT TTAACGTGGT TCGGTCAATT GACCTACGTC 362 CACAAAGGAG ATGAGCAATT CACTATAAAT ATGATAGTAC AATATACAGA GAGAAACAAC 81361 |||||||||| ||||||||| || ||||||| |||| | ||| || ||||||| |||||||||| CACAAAGGAG ATGAGCAATC CATTATAAAT ATGAGAATAC AAAATACAGA GAGAAACAAC 422 CTCAACC-AA TTCACTCGTA ATATATGGGA GGTTCACACA AGTCATAACG TATCAAG 81417 ||||||| || ||||||| | ||| ||| || | |||||||| ||| |||||| ||||||| CTCAACCAAA TTCACTCAGA ATACATGAGA GATTCACACA AGTGATAACG TATCAAG 479 hqPGS_C04HBa0077O05.1+_SGN-E389613+ (79083 79107,80052 80062,81093 81417) ******************************************************************************** EST sequence 271 -strand 785 n (File: SGN-E544264-) 1 CTTGATTCAG AAGTTAGCCC CACCAGCGGC AAAATTGACG ATAATCGAGT CACTGGGAAA 61 ACAAAAACGC ATAACAAACA TTCCCAATGT ACCCAAGCCT CAATGCAACA CTTCTAAACT 121 TCGCCATCCA AACTTTTTCG GCGGGATTAT GCATATGAAG ATTACCATAG CTGATGTAGA 181 TGTAGTTGGC TAAAGACCAA ATAAGAAGAA CGGTAAACAT CGCAGCGAAA ATAAGTTCAA 241 CCGCGTTTAC AATTCCAAGA GATTCAATTA CAAGCCGTGG CCGTCTAAAA TATTCCCGCA 301 CTTTATTACT ACTCCTAACA ATATAATTGT ATGTTAGTTA AAAGAGATAT ATCAAAGATA 361 GATCATTAAT AATTAGTATG TAATGTTAGG ATCGAAAATA AGCAGGTGTA AACGCGGAAG 421 CTAGCAAAGC AAACCTCAAA AGACTACGAG TAAGAAGACA ACGAGAAATA TACCCAAAGA 481 CACAAAGATT TAACGTGGTT GCAAATAAAA CTCAACATGT AATTGATTAA CCTGTGATTA 541 GAAGTTGACT TGTTGTAAAG ATGAAGATAA ACACAGCTCA CAGCAGCTAT CAACATTATG 601 GGAAATGTAA ATAAAAGAAG ATTTATCCCT TGTTCCCTGA AATATGTAGA GTTGAGTTTG 661 ATTAGTAGAT GTGGAGTCCA TGAATTTTTG TAAGTAGGTG TAGGTAACAT TACCCATATG 721 AAAAGCCATC CAACAAACAC CAAAACCACA AAACCATTCA AAATTGTCTT GCTCCCCATA 781 TTTTT Predicted gene structure (within gDNA segment 76726 to 84732): Exon 1 80052 80062 ( 11 n); cDNA 292 301 ( 10 n); score: 0.727 Intron 1 80063 80664 ( 602 n); Pd: 0.808 (s: 0), Pa: 0.000 (s: 0.60) Exon 2 80665 80725 ( 61 n); cDNA 302 360 ( 59 n); score: 0.607 Intron 2 80726 81024 ( 299 n); Pd: 0.000 (s: 0.60), Pa: 0.938 (s: 0) Exon 3 81025 81048 ( 24 n); cDNA 361 383 ( 23 n); score: 0.750 Intron 3 81049 81165 ( 117 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.96) Exon 4 81166 81282 ( 117 n); cDNA 384 500 ( 117 n); score: 0.940 Intron 4 81283 81607 ( 325 n); Pd: 0.000 (s: 0.98), Pa: 0.000 (s: 0) Exon 5 81608 81627 ( 20 n); cDNA 501 520 ( 20 n); score: 0.800 Intron 5 81628 81951 ( 324 n); Pd: 0.000 (s: 0), Pa: 0.179 (s: 0) Exon 6 81952 81988 ( 37 n); cDNA 521 555 ( 35 n); score: 0.649 MATCH C04HBa0077O05.1+ SGN-E544264- 0.826 270 0.344 C PGS_C04HBa0077O05.1+_SGN-E544264- (80052 80062,80665 80725,81025 81048,81166 81282,81608 81627,81952 81988) Alignment (genomic DNA sequence = upper lines): ATCCCCTCAA CGCAAAAATT GACCCCATAT TCCCCACACT CCTACGTACT CTCCATTATA 80111 || ||| | | | ATTCCCGC-A C......... .......... .......... .......... .......... 301 TTTCACCTCA TAATACTTGC TTAACCTATA GAAAATATTT TTACTAATTT ATCGAATATA 80171 .......... .......... .......... .......... .......... .......... 301 TATATATATA TATATATATA TATATATATA TATATATCAA CTTATATTTT AGAAAAATAT 80231 .......... .......... .......... .......... .......... .......... 301 TTTTCTTCCT AACAAACCCA CCCTAATTTT CAGTTTTTCT CTATTAATGT GGTCCAAATA 80291 .......... .......... .......... .......... .......... .......... 301 ATTAACATTT ACTAGAAGCA TATAATGCAA TCTGACTGCT GTTTAATTTA TTTTTTCTCA 80351 .......... .......... .......... .......... .......... .......... 301 CTAATGTGCT TAGATGTCAT TACCCACAGA AATTAAAATG GTGATCCATG ATAAATGGCT 80411 .......... .......... .......... .......... .......... .......... 301 TGTAAAAATG TATTCCACTT TTGTAAAGCT AACCCCAACA CCAAAAAGTT ATATTTGAAT 80471 .......... .......... .......... .......... .......... .......... 301 ATACAATGCA GAAGAAAAAT ATAGTTTTAA TAGTAGGCAT TTGACAATGT AATTTGGAGT 80531 .......... .......... .......... .......... .......... .......... 301 TTAATTTTAA TTTAAAATTA GTATTGTTTG TTTAGAATAT TTGAACAAAA CAATTATATT 80591 .......... .......... .......... .......... .......... .......... 301 AAAAAAAATC GATTTCAAAT CTCATATTCC ACTAAAAGGT AGAATTTCAA TTACAAGTTT 80651 .......... .......... .......... .......... .......... .......... 301 GTGATTTCAA ATTTTTAAAA CAAATTTGAA TCATGAATTT ATATTTTATA TATATATATA 80711 |||| | | | | || || | || ||| ||| || | | | | .......... ...TTTATTA CTACTCCTAA CAATATAATT GTATGTTAGT TA-AAAGAGA 347 TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATAAAAAGA 80771 ||||| | | ||| TATAT-CAAA GATA...... .......... .......... .......... .......... 360 TCAACAATGT GAATAGATTG TTTGTGCCAT GTTGGAGAAT TATATTAAGG AATGGCTAGT 80831 .......... .......... .......... .......... .......... .......... 360 AGCTGCTATT GTTGATTTAT TGGAATAACG GATGCTTGTA AAATTATGTT TATATGAAAG 80891 .......... .......... .......... .......... .......... .......... 360 TTTGTAAGAA TGTGTAATTT TAAATATTCA TTTATGAATA TGAAAGTTTG TAAGAATATG 80951 .......... .......... .......... .......... .......... .......... 360 TAATTTTAAA TATTCATTTA TGAAAAAGAT GTGTGATTTA CGATATTTTA AAATATTTCG 81011 .......... .......... .......... .......... .......... .......... 360 ACACTTTTGT TAGGATCGAA AATAAGTAGG TGTGTAAATG CGGAAGCTAG CAAAGCAAAC 81071 |||| ||||| || | | ||||| .......... ...GATCATT AATAATTA-G TATGTAA... .......... .......... 383 CTCGAAAGAT GAACACCTCC TTCTAACCTG GTTCAATCAT CGATTATCGA ATCACTAACC 81131 .......... .......... .......... .......... .......... .......... 383 TGACTCCATC ATTGAATCTG ACGCTGATAC CACTTGTTAG GATCGAAAAT AAGTAGGTGT 81191 |||||| |||||||||| ||| |||||| .......... .......... .......... ....TGTTAG GATCGAAAAT AAGCAGGTGT 409 AAATGCGGAA GCTAGCAAAG CAAATCTCGA AAGATCACGA GTAAGAAGAC AACGAGAAAT 81251 ||| |||||| |||||||||| |||| ||| | |||| |||| |||||||||| |||||||||| AAACGCGGAA GCTAGCAAAG CAAACCTCAA AAGACTACGA GTAAGAAGAC AACGAGAAAT 469 ATACCAAAAG ACACAAAGAT TTAACGTGGT TCAGTCAATC GACCTACATC CACAAAGGAG 81311 ||||| |||| |||||||||| |||||||||| | ATACCCAAAG ACACAAAGAT TTAACGTGGT T......... .......... .......... 500 ATGAGCAATT CACTATAAAT ATGATAGTAC AATATACAGA GAGAAACAAC CTCAACCAAT 81371 .......... .......... .......... .......... .......... .......... 500 TCACTCGTAA TATATGGGAG GTTCACACAA GTCATAACGT ATCAAGCTTG TGAACCATAA 81431 .......... .......... .......... .......... .......... .......... 500 ATTCTCCCCC TAACCAAAAC TCTCAAAGCC TTTAAGAATA TATTGTGAAT GTTGATTAAG 81491 .......... .......... .......... .......... .......... .......... 500 TTAGAAATAA CATGTCTCTC TTTATAAAGT CCTAAACCTT TTCCTACCGG AAAAAGGATT 81551 .......... .......... .......... .......... .......... .......... 500 AGTCAATCCA AAACATTTTC CTAAAAGGAA AACCTATGTA TGGTAAGAAG TTTAGGGCAA 81611 |||| .......... .......... .......... .......... .......... ......GCAA 504 ATAAAACCTA ACAACTTTTT GTGAACTATG ATATACCTAT TTAATTAGAT TATAAAAAGG 81671 ||||||| | ||| | ATAAAACTCA ACATGT.... .......... .......... .......... .......... 520 AAAAACTTTA ATAATTTTTG CGAATCATAA AATTTTTATA TTTATGAAAA AAAATGACTT 81731 .......... .......... .......... .......... .......... .......... 520 TTAAAATTAA AGTTATGATT AAACAAATTA CAATTTCAGA TTAACATGAT TTGAAATTAT 81791 .......... .......... .......... .......... .......... .......... 520 GGCCAAACGG GCCCAAATAT GGCATAAACA AATGTATACT TATTAATGGG ATGTTCATTA 81851 .......... .......... .......... .......... .......... .......... 520 AAATAATAAA AATAGAAACA TCGAGAATAT CCTAAAACAC TATCATAGAA CCATTGATAA 81911 .......... .......... .......... .......... .......... .......... 520 GATTCTGACT CATTTAAATG CATATAACTG ATTTGCATAG ATTTACATCT CCATGTGTTT 81971 | || || | |||| || .......... .......... .......... .......... AATT-GATTA ACCTGTGATT 539 GAGAAATCAA CTAGTTG 81988 |||| | | || |||| -AGAAGTTGA CTTGTTG 555 hqPGS_C04HBa0077O05.1+_SGN-E544264- (81025 81048,81166 81282) ******************************************************************************** EST sequence 263 -strand 780 n (File: SGN-E543331-) 1 CAACTACAAT AACAATGTTT TCGCGTTTAA ATTGTTAGAA CCGGAAATAA GCAGGGTAAA 61 CGCGGAAAGC TAGCAAAGCA AACCTCAAAA GACCACGAGT ATGAAAGACA ACGAGAAATA 121 TACCAAAAGA CACAAAGATT TAACGTGGTT CGGTCAATCG ACCTACGTCC ACAATGGAGA 181 TGAGCAATCC ACTATTAATA TGAGAGTACA AAATACAGAG AGAAACAACC TCAACCAATT 241 CACTAAGAAT ACACGGGAAC ATTTTCCTAC CAGAAAAAGA ATTAGTCAAT TCAAAACTTT 301 TTTCCTAAAA GAAAAACCTA TTTATGATAA GAAATTTAGG ACAAAATAAA ATCCAACATA 361 AATGATGTAA TTATACAATT CATATCATCA GACAATGGTT CATGGATCCA AAATCTTGAA 421 TGATTCCATT TTGGTTTGAG CTCAAACATC ACCATCTATA TAACTAAAAC TCGTCGAAAT 481 TGACTCAACC TGCTCATCTG ACACTTGAAA ATTCGAGACT CAAATTTAAT CATTAAGATG 541 AATTTTGTGA ATTTAAATAC CTTTTGCACG AAATGTACGC TGATAAAGCA TTTTAAGTGT 601 TTTTGAGGAG TAGCAGACGA AGCAATAGCG GATGGTAATG GTGATGGACA ATCATTGATC 661 CTTAACGAAG TTGCTCGAAT TCCTTCAGAA ATTTCCTCCA TAGTAAATTG TGATTTGATT 721 AATTATTGGC TCAAATAAAC AAGAAAATGG ATGAACAAGA ACTAATTAAG CATGTTTATG Predicted gene structure (within gDNA segment 79587 to 87336): Exon 1 81175 81391 ( 217 n); cDNA 42 259 ( 218 n); score: 0.880 Intron 1 81392 81527 ( 136 n); Pd: 0.131 (s: 0.86), Pa: 0.000 (s: 0.85) Exon 2 81528 81607 ( 80 n); cDNA 260 340 ( 81 n); score: 0.856 Intron 2 81608 81719 ( 112 n); Pd: 0.813 (s: 0.83), Pa: 0.000 (s: 0.62) Exon 3 81720 81771 ( 52 n); cDNA 341 392 ( 52 n); score: 0.635 Intron 3 81772 82128 ( 357 n); Pd: 0.000 (s: 0.64), Pa: 0.998 (s: 0) Exon 4 82129 82149 ( 21 n); cDNA 393 413 ( 21 n); score: 0.571 Intron 4 82150 84363 (2214 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 5 84364 84391 ( 28 n); cDNA 414 439 ( 26 n); score: 0.714 Intron 5 84392 86092 (1701 n); Pd: 0.246 (s: 0), Pa: 0.918 (s: 0) Exon 6 86093 86103 ( 11 n); cDNA 440 449 ( 10 n); score: 0.818 MATCH C04HBa0077O05.1+ SGN-E543331- 0.838 409 0.524 C PGS_C04HBa0077O05.1+_SGN-E543331- (81175 81391,81528 81607,81720 81771,82129 82149,84364 84391,86093 86103) Alignment (genomic DNA sequence = upper lines): CGAAAATAAG TAGGTGTAAA TGCGG-AAGC TAGCAAAGCA AATCTCGAAA GATCACGAGT 81233 || ||||||| ||| ||||| |||| |||| |||||||||| || ||| ||| || ||||||| CGGAAATAAG CAGG-GTAAA CGCGGAAAGC TAGCAAAGCA AACCTCAAAA GACCACGAGT 100 AAG-AAGACA ACGAGAAATA TACCAAAAGA CACAAAGATT TAACGTGGTT CAGTCAATCG 81292 | | |||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| ATGAAAGACA ACGAGAAATA TACCAAAAGA CACAAAGATT TAACGTGGTT CGGTCAATCG 160 ACCTACATCC ACAAAGGAGA TGAGCAATTC ACTATAAATA TGATAGTACA ATATACAGAG 81352 |||||| ||| |||| ||||| |||||||| | ||||| |||| ||| |||||| | |||||||| ACCTACGTCC ACAATGGAGA TGAGCAATCC ACTATTAATA TGAGAGTACA AAATACAGAG 220 AGAAACAACC TCAACCAATT CACTCGTAAT ATATGGGAGG TTCACACAAG TCATAACGTA 81412 |||||||||| |||||||||| |||| ||| | | |||| AGAAACAACC TCAACCAATT CACTAAGAAT ACACGGGAA. .......... .......... 259 TCAAGCTTGT GAACCATAAA TTCTCCCCCT AACCAAAACT CTCAAAGCCT TTAAGAATAT 81472 .......... .......... .......... .......... .......... .......... 259 ATTGTGAATG TTGATTAAGT TAGAAATAAC ATGTCTCTCT TTATAAAGTC CTAAACCTTT 81532 | ||| .......... .......... .......... .......... .......... .....CATTT 264 TCCTACCGGA AAAAGGATTA GTCAATCCAA AAC-ATTTTC CTAAAAGGAA AACCTATGTA 81591 ||||||| || ||||| |||| |||||| ||| ||| ||||| ||||||| || ||||||| || TCCTACCAGA AAAAGAATTA GTCAATTCAA AACTTTTTTC CTAAAAGAAA AACCTATTTA 324 TGGTAAGAAG TTTAGGGCAA ATAAAACCTA ACAACTTTTT GTGAACTATG ATATACCTAT 81651 || |||||| |||||| TGATAAGAAA TTTAGG.... .......... .......... .......... .......... 340 TTAATTAGAT TATAAAAAGG AAAAACTTTA ATAATTTTTG CGAATCATAA AATTTTTATA 81711 .......... .......... .......... .......... .......... .......... 340 TTTATGAAAA AAAATGACTT TTAAAATTAA AGTTATGATT AAACAAATTA CAATTTCAGA 81771 | ||||| | | || || || | | | ||| | |||| | | | ||||| ........AC AAAATAAAAT CCAACATAAA TGATGTAATT ATACAATTCA TATCATCAGA 392 TTAACATGAT TTGAAATTAT GGCCAAACGG GCCCAAATAT GGCATAAACA AATGTATACT 81831 .......... .......... .......... .......... .......... .......... 392 TATTAATGGG ATGTTCATTA AAATAATAAA AATAGAAACA TCGAGAATAT CCTAAAACAC 81891 .......... .......... .......... .......... .......... .......... 392 TATCATAGAA CCATTGATAA GATTCTGACT CATTTAAATG CATATAACTG ATTTGCATAG 81951 .......... .......... .......... .......... .......... .......... 392 ATTTACATCT CCATGTGTTT GAGAAATCAA CTAGTTGGCA AGTAGATCAA TGATCTTTAA 82011 .......... .......... .......... .......... .......... .......... 392 TCTAATATTA AATAAAAATC ACGATATTAT TTTTTAAAAA GAGAAAGCAG ATTATAGAGT 82071 .......... .......... .......... .......... .......... .......... 392 CATATATATC AAAATAATAT ATAATTTAAC ACTACTATGG GTTTGTATTT GTGGCAGAGG 82131 .......... .......... .......... .......... .......... .......CAA 395 TGGATCTAGG ATTTAAAGGT CGAGGGTGTC ATAATATTCA AGTAAAATAA AAAGACTGGT 82191 ||| || || || ||| TGGTTCATGG ATCCAAAA.. .......... .......... .......... .......... 413 TACTTTAATT TTGGTTAAAA TTCAGGTTAT TAATTTTATT TTATTTTATT TTATAAACAA 82251 .......... .......... .......... .......... .......... .......... 413 ATCGATCAAA TGTGTCTATA GTAATATTTT CTTTTAGATA TTATGTGATC ATAGATAACT 82311 .......... .......... .......... .......... .......... .......... 413 AAACAATTAA ATTTTTATTT TATTTTGGGA ATAAAATGTC TTATTTGCTG AAACTTTGAG 82371 .......... .......... .......... .......... .......... .......... 413 AGAAAAAAAA GTTTTGAGCT TGTATAAAAC ATCTAATAAT ATTAACATAA TCATTTGTCT 82431 .......... .......... .......... .......... .......... .......... 413 TTCATTGACT TTATGTGTTG TTGGAGATAA AAATTGTAGT TCAGCCTATT CATTTTACTT 82491 .......... .......... .......... .......... .......... .......... 413 AATAAAATCG TCGGTGGAAA TCGAAAGAAC CTTTAAAAAA ATTTTAAAAA AAGATTTTTG 82551 .......... .......... .......... .......... .......... .......... 413 AAATTTATAT TTTTTTCTAA AAACTATTAT TTAAATATAT TCTTAATAAT ATTTATTTGA 82611 .......... .......... .......... .......... .......... .......... 413 CGCTCATAAT TCAGTACTCA CTAATTGATA AAACAAAATA AATACGTTAC ACTCAAATCA 82671 .......... .......... .......... .......... .......... .......... 413 ATAGTTTAAT AATTAGTGCA AGAGAAAGTA AAAAAAATAA AAATTAATTA AGAAAACAGA 82731 .......... .......... .......... .......... .......... .......... 413 TCAATTTGAA TTAATAAAGA ATTATAAATA AATATGAATG AATGGAGAAA AAGAAAAGAA 82791 .......... .......... .......... .......... .......... .......... 413 AAGAAAAAGC GGAGCAAACA AAAAATAAAT AAATGTTGTT GCTGAAATTC AAACTTAACT 82851 .......... .......... .......... .......... .......... .......... 413 TGATGAGGTG GCAAACTCTC TCCTTTGCCA ATTGAGTTAT TCCGTTTTAT AGTCATTGGG 82911 .......... .......... .......... .......... .......... .......... 413 TGGCAATAGT TATTCCGTGA CACCCTCACC CTGACACCCT CACCCGTACA CCTAAATCTG 82971 .......... .......... .......... .......... .......... .......... 413 CCTCTGATTT GTGGTGCAAT AAAACTGTTT TACCTTTAAT CAGAGATCTC AAAATACATG 83031 .......... .......... .......... .......... .......... .......... 413 TTTTGGATAT AAAGAAAATC TAACTAGAAG TGTCATGTCT AAATGAACCT TGCAGTGTGT 83091 .......... .......... .......... .......... .......... .......... 413 AATTTAAATT TAATCAAGAC TTATATATAC TCTAAACATC GAATAAAAAG AAAATAATCT 83151 .......... .......... .......... .......... .......... .......... 413 AAACTTAACA ATGGTTGAAC TTACTATCTT AAAGGATATT GGATACTAGA CTATCTGAAT 83211 .......... .......... .......... .......... .......... .......... 413 TCCTTTACCA CTATTATCAA GTGATTAGAA TATTTGCTTG GCACTCCTTT ATTAGACAAG 83271 .......... .......... .......... .......... .......... .......... 413 AGGGTGAGAT ATAGTCCTTT ACAAATTTGT TTTAGTTTTA TGATATTTTT ATTTTTATAT 83331 .......... .......... .......... .......... .......... .......... 413 GTAAGAAAAT TGAAAATACT GTTTCTATTT AATTTGTACG TAATTGTAAA GAGTTATATT 83391 .......... .......... .......... .......... .......... .......... 413 CACAATAAAA AAAGGAAAAA AAAAAAGAAA AGGATATGTT ATCCAAGACC ATATTTTAAG 83451 .......... .......... .......... .......... .......... .......... 413 TTTCAAGATG TTATTGCATA AGGAAAAAAA CAAATAAAGA ATTTTGCTTG ATAGTTCAAA 83511 .......... .......... .......... .......... .......... .......... 413 TTTTGTCCAT CGATTTTTTT AGCCCTTCCT AAAAACTCCG TTAGATAATC TCAATATTCA 83571 .......... .......... .......... .......... .......... .......... 413 GCCTATGAAA AGGTCTATGA GGGGCTAGGG TGGCTTGGGT GAAGTCATGA CAGAACATGA 83631 .......... .......... .......... .......... .......... .......... 413 CGTTTGTTTA TTTTTTTTAA TTACGAAATA AAATTATATT TTTGCTATCA ATTTTTTCTT 83691 .......... .......... .......... .......... .......... .......... 413 TTGACATGAT GATAAACGAA TAATTCTAAC AAAATATTAT TTTTTTACTT TATTAGTATT 83751 .......... .......... .......... .......... .......... .......... 413 CAAATCCCTA ATTTTGAAAA TTTAAAAATA TAAAATATTT ATCATCCAAA CAACTCCTTC 83811 .......... .......... .......... .......... .......... .......... 413 AATAATAAGT TCGTTAGAAT CACTTACAGA AAAAGCTAAT AAAGGAGTAG AAATAGTAAT 83871 .......... .......... .......... .......... .......... .......... 413 AAAAATAGGC CGTGTAGCAA TCCAAACTCT TTGGACTCAA CAAAGAAAGA TTATTGTATA 83931 .......... .......... .......... .......... .......... .......... 413 TGATAATTAA TAGCCGTAAA AGTAAAGCGC AAAAAAGAAA TAAAAAATTA ACTAATTAGC 83991 .......... .......... .......... .......... .......... .......... 413 CTTAATGCAT ATCCTGTTTG TCAACTTATT CTCCAAAACA ACGTTGCCCA TACGTTAATT 84051 .......... .......... .......... .......... .......... .......... 413 TAACTTTAAA TACTTAATTA GTTAGGCACT TCATTTTGTA GTCGAGGTAA CAATTTTCTT 84111 .......... .......... .......... .......... .......... .......... 413 ATTGATTTTT AAGTACTTAA GAATTATTTT ATAAAATTTT CCACATCACT TCTCCTTTTA 84171 .......... .......... .......... .......... .......... .......... 413 ATTTAAAGGG AAAAGAAGTT TAAAAGTGAA AAAGTAATTA GTAAGTTAAT GGAACTATTT 84231 .......... .......... .......... .......... .......... .......... 413 TTAACAATTT ATAAAGGGAG GACCAAAAGA AAATTGACAA TTTGAGTGTT TTCCCACTGA 84291 .......... .......... .......... .......... .......... .......... 413 AAAAATTATT TATTTCATCT TAAATTAACA AATATGTACA CCAAGTTAAA GGGTTTGATA 84351 .......... .......... .......... .......... .......... .......... 413 ATATTTTCCG ATTCATTAAT TTATTCACAT TTACGATTGA GTTGGCATTC ACTATACCTT 84411 || || | | |||| ||| || | |||| .......... ..TC-TTGAA TGATTC-CAT TTTGGTTTGA .......... .......... 439 CTTTTATCTA CGAAATTATA TAAATCTTTT TTAACGATCG AAACTCCTAA ATCAAAGGTA 84471 .......... .......... .......... .......... .......... .......... 439 GCCTTGGTAT CTTTCGATTC TTGTTGTAAG TAAATAATGT TCGTATTTAT ATTTATAGTT 84531 .......... .......... .......... .......... .......... .......... 439 TAATGAAGCT CTAACATAAA ATAAGTGAAC TCTATTTATC CTGATTCATT AAAAAAAAAA 84591 .......... .......... .......... .......... .......... .......... 439 GTTCAATATT CAAATAAGAT CAAAAGTTTT ACACCAAAAA AAATTTAATT TCAAATAATA 84651 .......... .......... .......... .......... .......... .......... 439 TATAGTAAAA TTTTGACCGT ACTTACATTA ATGTATCATC AAGTAGAACT TTCTTTTAGT 84711 .......... .......... .......... .......... .......... .......... 439 TTTGAGTGTT TAATTATAAA ATTTTCAAAA AATAAACCAA TTATATTTAC AAAATATATG 84771 .......... .......... .......... .......... .......... .......... 439 TTTAGAACTA AAATTAATTT TATTTACCGT GAGAGAAACC ACAACAAGGA TCCGTGGCGC 84831 .......... .......... .......... .......... .......... .......... 439 AATGGTAGCG CGTCTGACTC CAGATCAGAA GGTTGCGTGT TCGATTCACG TCGGGTTCAA 84891 .......... .......... .......... .......... .......... .......... 439 TTCCCCGATT CATAATATGA TCCAATTTTT TTTATTTTTT TTTTAAATTG GAATTTTTTT 84951 .......... .......... .......... .......... .......... .......... 439 AAAGATATTT TGGAGACTTG TCTTTCATTA TTTAATTTTT GCGTAGGCGT TCAATCCTTT 85011 .......... .......... .......... .......... .......... .......... 439 TTCTCCCCCG AAATATTAGG AGATTTTTAG ATATTGTAGA GACTAGTCTT TAATTTATTT 85071 .......... .......... .......... .......... .......... .......... 439 AATTTTAATA CGGGCGTTCA ATCCTTCTTT TTTTTAAAAA AAAATATTAG GAGTTTTTCT 85131 .......... .......... .......... .......... .......... .......... 439 AGATATTTTG GAGACTTATT CTAAATCTAT CTTTTGTTTA ATGCGGAATT CTTACATAAA 85191 .......... .......... .......... .......... .......... .......... 439 TGTATAGACC AAAAAAAAAG AAAAATTTTC GTAACCGCTA TAATAAACTT AATTATGTTC 85251 .......... .......... .......... .......... .......... .......... 439 CATAGATATA ACTTGCATAT TTATTCGCCA ATCCATAACG GTCCAATCCT TTTTCTTTTC 85311 .......... .......... .......... .......... .......... .......... 439 TTTCTTTCAA CATTGGGAAC TTTTTAGATA TTTTAGAGAC TTGTCTTCAA TTAACTAACT 85371 .......... .......... .......... .......... .......... .......... 439 TTAATGTTTT TTACTCTTAA ATATTAGGAG CTTTTTAGAT ACTTTGAAGA CTTGTTTTTT 85431 .......... .......... .......... .......... .......... .......... 439 AGTTTATTTA ATTTTAACAT GGACGTTCAA TCTTTTTATT TTTATATAAA AAAATAAAGA 85491 .......... .......... .......... .......... .......... .......... 439 GCTCTTTAGA TATTTCGGCG ACCTCTCTTT AATTTTTTTA TGACTTTCTA CATAGATACA 85551 .......... .......... .......... .......... .......... .......... 439 TAGATTAAAA AAGATGAAAA AATTTTCGCA AGTAGCCGCT ACAATAAACT CAATTATGTT 85611 .......... .......... .......... .......... .......... .......... 439 TCATAGATAC CGTTTGCATA TCCTTTTTCT ATTCTTTTTT TTCAACATTG GGAGCTTTTT 85671 .......... .......... .......... .......... .......... .......... 439 AGATATTTTG GAAACTTGTC TTTAAATTAT CTAATTTTAA TGCGAGTGTT CAATCCTTTT 85731 .......... .......... .......... .......... .......... .......... 439 TTCTTCTTAA AATATTAAGA GCTTTTTAGA CATTTTCAAA GACTTGTCTT GAATTTTTCT 85791 .......... .......... .......... .......... .......... .......... 439 ATTTTTAACG TGGGTTTCTT ACATGGATGT ATAGACAAAA AAGAATAAAG AGACTTTTCA 85851 .......... .......... .......... .......... .......... .......... 439 TAGATATTCA CTATAATAAA TTTAATTATA TTTCATAGGT ATAGTTTTCA TATTTATTCT 85911 .......... .......... .......... .......... .......... .......... 439 CTGATCCAGG TCCAACCATT TTTCTTTTTT AAAACAATTG GAACTTTTAA TATATTTTGA 85971 .......... .......... .......... .......... .......... .......... 439 AAACTTCTTT AATTTATCTA ATTTTAACCC AACATCCAAC CCTTTTTTTC TTCCCCTTAA 86031 .......... .......... .......... .......... .......... .......... 439 ATATTGGGAG CCCTTTAGAT ATTCTGGATA CTCGTCTTTA ATTTATCTAT TTTTAACGCA 86091 .......... .......... .......... .......... .......... .......... 439 GGCTTCTAAC AT 86103 || || ||| || .GC-TCAAAC AT 449 hqPGS_C04HBa0077O05.1+_SGN-E543331- (81175 81391,81528 81607,81720 81771,82129 82149,84364 84391) ******************************************************************************** EST sequence 69 +strand 535 n (File: SGN-E243194+) 1 AAAAGACATA AAGATTTAAC GTGGTTCGGT CAATCGACCT ACGTCCACAA AGGAGATGAG 61 CAATCCACTA TAAATATGAG AGTACAAAAT ACAGAGGGAA ACAACCTCAA CCAATTCACT 121 CAGAATACAT GGGAGGTTCA CACAAGTGAT AACGTATCAA GCTTGTGACC CACAAATTCT 181 CCCTCTAACC AAAACTCTCA AAGCACTTAA GACTACATTT TGAATGCTGA TTAAGTTAGA 241 AGAAAAATGC CTCTATTTAT GGAGTCCTAA ACCTTTTCCT ACAAGAAAAG GATTAGTCAA 301 TCCAAAACCT TTTCCTACAA GAAAAGGATT AGTCAATCCA AAACCTTTTC CTACAAGGAA 361 AACCTATTTA TGGTAAGAAA TTTAGGGCAA ATAAAACCCA ACAAGTCTCC CCCTTGGCCT 421 GAATTTCTGA CAAATAAACT TGTCCACCTT CTTCACTTAA TCTTCAACAA CTTGCTTCTC 481 CTCTCCATAA TCTCCTTTGC AAAATTTATG TCTCAACACA AAGAATCTCT CTGAA Predicted gene structure (within gDNA segment 80576 to 85380): Exon 1 81257 81593 ( 337 n); cDNA 1 333 ( 333 n); score: 0.884 Intron 1 81594 83888 (2295 n); Pd: 0.512 (s: 0.82), Pa: 0.000 (s: 0) Exon 2 83889 83926 ( 38 n); cDNA 334 368 ( 35 n); score: 0.711 MATCH C04HBa0077O05.1+ SGN-E243194+ 0.884 375 0.701 C PGS_C04HBa0077O05.1+_SGN-E243194+ (81257 81593,83889 83926) Alignment (genomic DNA sequence = upper lines): AAAAGACACA AAGATTTAAC GTGGTTCAGT CAATCGACCT ACATCCACAA AGGAGATGAG 81316 |||||||| | |||||||||| ||||||| || |||||||||| || ||||||| |||||||||| AAAAGACATA AAGATTTAAC GTGGTTCGGT CAATCGACCT ACGTCCACAA AGGAGATGAG 60 CAATTCACTA TAAATATGAT AGTACAATAT ACAGAGAGAA ACAACCTCAA CCAATTCACT 81376 |||| ||||| ||||||||| ||||||| || |||||| ||| |||||||||| |||||||||| CAATCCACTA TAAATATGAG AGTACAAAAT ACAGAGGGAA ACAACCTCAA CCAATTCACT 120 CGTAATATAT GGGAGGTTCA CACAAGTCAT AACGTATCAA GCTTGTGAAC CATAAATTCT 81436 | |||| || |||||||||| ||||||| || |||||||||| |||||||| | || ||||||| CAGAATACAT GGGAGGTTCA CACAAGTGAT AACGTATCAA GCTTGTGACC CACAAATTCT 180 CCCCCTAACC AAAACTCTCA AAGCCTTTAA GAATATATTG TGAATGTTGA TTAAGTTAGA 81496 ||| |||||| |||||||||| |||| |||| || || ||| |||||| ||| |||||||||| CCCTCTAACC AAAACTCTCA AAGCACTTAA GACTACATTT TGAATGCTGA TTAAGTTAGA 240 AATAACATGT CTCTCTTTAT AAAGTCCTAA ACCTTTTCCT ACCGGAAAAA GGATTAGTCA 81556 | || ||| |||| ||||| |||||||| |||||||||| || | |||| |||||||||| AGAAAAATGC CTCTATTTAT GGAGTCCTAA ACCTTTTCCT ACAAG-AAAA GGATTAGTCA 299 ATCCAAAACA TTTTCCTAAA AGGAAAACCT ATGTATGGTA AGAAGTTTAG GGCAAATAAA 81616 ||||||||| |||||||| | | ||||| || || ATCCAAAACC TTTTCCTACA A-GAAAA-GG AT-TAGT... .......... .......... 333 ACCTAACAAC TTTTTGTGAA CTATGATATA CCTATTTAAT TAGATTATAA AAAGGAAAAA 81676 .......... .......... .......... .......... .......... .......... 333 CTTTAATAAT TTTTGCGAAT CATAAAATTT TTATATTTAT GAAAAAAAAT GACTTTTAAA 81736 .......... .......... .......... .......... .......... .......... 333 ATTAAAGTTA TGATTAAACA AATTACAATT TCAGATTAAC ATGATTTGAA ATTATGGCCA 81796 .......... .......... .......... .......... .......... .......... 333 AACGGGCCCA AATATGGCAT AAACAAATGT ATACTTATTA ATGGGATGTT CATTAAAATA 81856 .......... .......... .......... .......... .......... .......... 333 ATAAAAATAG AAACATCGAG AATATCCTAA AACACTATCA TAGAACCATT GATAAGATTC 81916 .......... .......... .......... .......... .......... .......... 333 TGACTCATTT AAATGCATAT AACTGATTTG CATAGATTTA CATCTCCATG TGTTTGAGAA 81976 .......... .......... .......... .......... .......... .......... 333 ATCAACTAGT TGGCAAGTAG ATCAATGATC TTTAATCTAA TATTAAATAA AAATCACGAT 82036 .......... .......... .......... .......... .......... .......... 333 ATTATTTTTT AAAAAGAGAA AGCAGATTAT AGAGTCATAT ATATCAAAAT AATATATAAT 82096 .......... .......... .......... .......... .......... .......... 333 TTAACACTAC TATGGGTTTG TATTTGTGGC AGAGGTGGAT CTAGGATTTA AAGGTCGAGG 82156 .......... .......... .......... .......... .......... .......... 333 GTGTCATAAT ATTCAAGTAA AATAAAAAGA CTGGTTACTT TAATTTTGGT TAAAATTCAG 82216 .......... .......... .......... .......... .......... .......... 333 GTTATTAATT TTATTTTATT TTATTTTATA AACAAATCGA TCAAATGTGT CTATAGTAAT 82276 .......... .......... .......... .......... .......... .......... 333 ATTTTCTTTT AGATATTATG TGATCATAGA TAACTAAACA ATTAAATTTT TATTTTATTT 82336 .......... .......... .......... .......... .......... .......... 333 TGGGAATAAA ATGTCTTATT TGCTGAAACT TTGAGAGAAA AAAAAGTTTT GAGCTTGTAT 82396 .......... .......... .......... .......... .......... .......... 333 AAAACATCTA ATAATATTAA CATAATCATT TGTCTTTCAT TGACTTTATG TGTTGTTGGA 82456 .......... .......... .......... .......... .......... .......... 333 GATAAAAATT GTAGTTCAGC CTATTCATTT TACTTAATAA AATCGTCGGT GGAAATCGAA 82516 .......... .......... .......... .......... .......... .......... 333 AGAACCTTTA AAAAAATTTT AAAAAAAGAT TTTTGAAATT TATATTTTTT TCTAAAAACT 82576 .......... .......... .......... .......... .......... .......... 333 ATTATTTAAA TATATTCTTA ATAATATTTA TTTGACGCTC ATAATTCAGT ACTCACTAAT 82636 .......... .......... .......... .......... .......... .......... 333 TGATAAAACA AAATAAATAC GTTACACTCA AATCAATAGT TTAATAATTA GTGCAAGAGA 82696 .......... .......... .......... .......... .......... .......... 333 AAGTAAAAAA AATAAAAATT AATTAAGAAA ACAGATCAAT TTGAATTAAT AAAGAATTAT 82756 .......... .......... .......... .......... .......... .......... 333 AAATAAATAT GAATGAATGG AGAAAAAGAA AAGAAAAGAA AAAGCGGAGC AAACAAAAAA 82816 .......... .......... .......... .......... .......... .......... 333 TAAATAAATG TTGTTGCTGA AATTCAAACT TAACTTGATG AGGTGGCAAA CTCTCTCCTT 82876 .......... .......... .......... .......... .......... .......... 333 TGCCAATTGA GTTATTCCGT TTTATAGTCA TTGGGTGGCA ATAGTTATTC CGTGACACCC 82936 .......... .......... .......... .......... .......... .......... 333 TCACCCTGAC ACCCTCACCC GTACACCTAA ATCTGCCTCT GATTTGTGGT GCAATAAAAC 82996 .......... .......... .......... .......... .......... .......... 333 TGTTTTACCT TTAATCAGAG ATCTCAAAAT ACATGTTTTG GATATAAAGA AAATCTAACT 83056 .......... .......... .......... .......... .......... .......... 333 AGAAGTGTCA TGTCTAAATG AACCTTGCAG TGTGTAATTT AAATTTAATC AAGACTTATA 83116 .......... .......... .......... .......... .......... .......... 333 TATACTCTAA ACATCGAATA AAAAGAAAAT AATCTAAACT TAACAATGGT TGAACTTACT 83176 .......... .......... .......... .......... .......... .......... 333 ATCTTAAAGG ATATTGGATA CTAGACTATC TGAATTCCTT TACCACTATT ATCAAGTGAT 83236 .......... .......... .......... .......... .......... .......... 333 TAGAATATTT GCTTGGCACT CCTTTATTAG ACAAGAGGGT GAGATATAGT CCTTTACAAA 83296 .......... .......... .......... .......... .......... .......... 333 TTTGTTTTAG TTTTATGATA TTTTTATTTT TATATGTAAG AAAATTGAAA ATACTGTTTC 83356 .......... .......... .......... .......... .......... .......... 333 TATTTAATTT GTACGTAATT GTAAAGAGTT ATATTCACAA TAAAAAAAGG AAAAAAAAAA 83416 .......... .......... .......... .......... .......... .......... 333 AGAAAAGGAT ATGTTATCCA AGACCATATT TTAAGTTTCA AGATGTTATT GCATAAGGAA 83476 .......... .......... .......... .......... .......... .......... 333 AAAAACAAAT AAAGAATTTT GCTTGATAGT TCAAATTTTG TCCATCGATT TTTTTAGCCC 83536 .......... .......... .......... .......... .......... .......... 333 TTCCTAAAAA CTCCGTTAGA TAATCTCAAT ATTCAGCCTA TGAAAAGGTC TATGAGGGGC 83596 .......... .......... .......... .......... .......... .......... 333 TAGGGTGGCT TGGGTGAAGT CATGACAGAA CATGACGTTT GTTTATTTTT TTTAATTACG 83656 .......... .......... .......... .......... .......... .......... 333 AAATAAAATT ATATTTTTGC TATCAATTTT TTCTTTTGAC ATGATGATAA ACGAATAATT 83716 .......... .......... .......... .......... .......... .......... 333 CTAACAAAAT ATTATTTTTT TACTTTATTA GTATTCAAAT CCCTAATTTT GAAAATTTAA 83776 .......... .......... .......... .......... .......... .......... 333 AAATATAAAA TATTTATCAT CCAAACAACT CCTTCAATAA TAAGTTCGTT AGAATCACTT 83836 .......... .......... .......... .......... .......... .......... 333 ACAGAAAAAG CTAATAAAGG AGTAGAAATA GTAATAAAAA TAGGCCGTGT AGCAATCCAA 83896 |||||||| .......... .......... .......... .......... .......... ..CAATCCAA 341 ACTCTTTGGA CTCAACAAAG AAAGATTATT 83926 | |||| | | |||| | ||| |||| AACCTTT--T C-CTACAAGG AAAACCTATT 368 hqPGS_C04HBa0077O05.1+_SGN-E243194+ (81257 81593,83889 83926) ******************************************************************************** EST sequence 36 +strand 595 n (File: SGN-E271645+) 1 GATTAGTCAA TCCAAAATTT TTCCCTAAAA GGAAAACCTA TTTATGTTAA GAAATTATGG 61 TAAATAAAAT CCAACAAATC TCCTCCCCCT TGGCCTGTAT TTCTGACCAA AATAAATTTC 121 TCCACATTCT TCATTTAATC TTCAACAACT TGCTTCTCTT CTTCTTAATC TCCTTTGTAA 181 AATTTATGTC TCAACCATAG AAAACCTCTC TGAAACAATT TCTCCAACAA AATCTTCATT 241 ACTGTCAAAA AGATTGCGGC TAGAACCTAC CACCTGTCAA GATGAACCAC CACCCTCTTT 301 CTAACCTGGT CCAATAATCG ATTATCGAAC CACTGAACCT GACCTCTGTC ATTAAATGGC 361 TCTAATACCC ACTTGTTAGG ATCGAAATAA GCAGGTGTAA ATGCGGAAGC TAGCAAAGCA 421 AACTTCGAAA GACCACGAGT AAGAAGACAA CGAGAAATAT ACCAAAAGAC ACCAAAGATT 481 TAACGTGGTT CGGTCAATCG ACCTACGTTC ACAAAGGAGA TGAGCAATCC ACTATAAATA 541 TGAGAGTACA ATATACAGAG AGAAACAACA TCAACCAATT CATTCGGAAT ATATG Predicted gene structure (within gDNA segment 76881 to 82231): Exon 1 81088 81387 ( 300 n); cDNA 295 595 ( 301 n); score: 0.883 MATCH C04HBa0077O05.1+ SGN-E271645+ 0.883 300 0.504 C PGS_C04HBa0077O05.1+_SGN-E271645+ (81088 81387) Alignment (genomic DNA sequence = upper lines): CTCCTTCTAA CCTGGTTCAA TCATCGATTA TCGAATCACT -AACCTGA-C TCCATCATTG 81145 ||| |||||| |||||| ||| | |||||||| ||||| |||| ||||||| | || ||||| CTCTTTCTAA CCTGGTCCAA TAATCGATTA TCGAACCACT GAACCTGACC TCTGTCATT- 353 AATCTGACGC TGATA-CCAC TTGTTAGGAT CGAAAATAAG TAGGTGTAAA TGCGGAAGCT 81204 || || | | | ||| |||| |||||||||| || ||||||| ||||||||| |||||||||| AA-ATGGCTC TAATACCCAC TTGTTAGGAT CG-AAATAAG CAGGTGTAAA TGCGGAAGCT 411 AGCAAAGCAA ATCTCGAAAG ATCACGAGTA AGAAGACAAC GAGAAATATA CCAAAAGACA 81264 |||||||||| | ||||||| | |||||||| |||||||||| |||||||||| |||||||||| AGCAAAGCAA ACTTCGAAAG ACCACGAGTA AGAAGACAAC GAGAAATATA CCAAAAGACA 471 -CAAAGATTT AACGTGGTTC AGTCAATCGA CCTACATCCA CAAAGGAGAT GAGCAATTCA 81323 ||||||||| |||||||||| ||||||||| ||||| | || |||||||||| ||||||| || CCAAAGATTT AACGTGGTTC GGTCAATCGA CCTACGTTCA CAAAGGAGAT GAGCAATCCA 531 CTATAAATAT GATAGTACAA TATACAGAGA GAAACAACCT CAACCAATTC ACTCGTAATA 81383 |||||||||| || ||||||| |||||||||| |||||||| | |||||||||| | ||| |||| CTATAAATAT GAGAGTACAA TATACAGAGA GAAACAACAT CAACCAATTC ATTCGGAATA 591 TATG 81387 |||| TATG 595 hqPGS_C04HBa0077O05.1+_SGN-E271645+ (81088 81387) ******************************************************************************** EST sequence 182 -strand 747 n (File: SGN-E211090-) 1 CCCATATCAA CGGCTGGATT CAAGCTCTGC CCACAGTCGT AAATAATATC AGATTGCAAA 61 ATGGTAGTCT CTCCGGTCAG GATATCAATC TCCACCTCAC TGACAGCAGC ACCAAAGTTC 121 AAATAACTCG TAAAATCAGA TTCTGGTACA TAATAAGAAT TTGCTGCTAA GTTTACTGAT 181 TCCATTTGTG CCTGCAAAAA GAAGGGGGTG GAGGGACAGA ACTGCAAACT CAGATATGTT 241 AGGACCGAAA ATAAGCAGGT GTAAACGCGG AAGCTAGCAA TACAAACCTC GAAAGACCAC 301 GAGTAAGAAG ACAACGAGAA ATATATCAAA AGACACAAAG ATTTAACGTG GTTCGGTCAA 361 TCAACCTACG TCCACAAAGG AGATGAGCAA TCCACTATAA ATATAAGAGT ACAAAATACA 421 GAGAGAAACA ACCTCAACCA ATTCACTCAG AATACATGGG AGGTTCACAC AAGTGATAAC 481 ATATCAAGCT TGTGACCCAC AGATTCTCCC TCTAACCAAA ACTCTCAAAG CCTGTAAGAC 541 TACATTGTGA ATGCTGATTA AGTTAAAAGG AATATTCATC TATTTATAGA GTCCTAAACC 601 TTTTCCTACA AGAAAAGGAT TAGTCAATTC AAAACCTTTT CCTAAAAGGA AAACCTATTT 661 ATGGTAAGAA ATCAGGGCAA ATAAAATCCA ACAAGATACT TAAAAGATGA GCAAGAGTGG 721 CTAATGGATT TAAATTAACA AATTGTT Predicted gene structure (within gDNA segment 77647 to 83078): Exon 1 81166 81607 ( 442 n); cDNA 237 676 ( 440 n); score: 0.896 MATCH C04HBa0077O05.1+ SGN-E211090- 0.896 442 0.592 C PGS_C04HBa0077O05.1+_SGN-E211090- (81166 81607) Alignment (genomic DNA sequence = upper lines): TGTTAGGATC GAAAATAAGT AGGTGTAAAT GCGGAAGCTA GCAAAGCAAA TCTCGAAAGA 81225 |||||||| | ||||||||| ||||||||| |||||||||| |||| |||| ||||||||| TGTTAGGACC GAAAATAAGC AGGTGTAAAC GCGGAAGCTA GCAATACAAA CCTCGAAAGA 296 TCACGAGTAA GAAGACAACG AGAAATATAC CAAAAGACAC AAAGATTTAA CGTGGTTCAG 81285 ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||| | CCACGAGTAA GAAGACAACG AGAAATATAT CAAAAGACAC AAAGATTTAA CGTGGTTCGG 356 TCAATCGACC TACATCCACA AAGGAGATGA GCAATTCACT ATAAATATGA TAGTACAATA 81345 |||||| ||| ||| |||||| |||||||||| ||||| |||| |||||||| | ||||||| | TCAATCAACC TACGTCCACA AAGGAGATGA GCAATCCACT ATAAATATAA GAGTACAAAA 416 TACAGAGAGA AACAACCTCA ACCAATTCAC TCGTAATATA TGGGAGGTTC ACACAAGTCA 81405 |||||||||| |||||||||| |||||||||| || |||| | |||||||||| |||||||| | TACAGAGAGA AACAACCTCA ACCAATTCAC TCAGAATACA TGGGAGGTTC ACACAAGTGA 476 TAACGTATCA AGCTTGTGAA CCATAAATTC TCCCCCTAAC CAAAACTCTC AAAGCCTTTA 81465 |||| ||||| ||||||||| ||| | |||| |||| ||||| |||||||||| ||||||| || TAACATATCA AGCTTGTGAC CCACAGATTC TCCCTCTAAC CAAAACTCTC AAAGCCTGTA 536 AGAATATATT GTGAATGTTG ATTAAGTTAG AAATAACATG TCTCTCTTTA TAAAGTCCTA 81525 ||| || ||| ||||||| || ||||||||| || || || ||| |||| || ||||||| AGACTACATT GTGAATGCTG ATTAAGTTAA AAGGAATATT CATCTATTTA TAGAGTCCTA 596 AACCTTTTCC TACCGGAAAA AGGATTAGTC AATCCAAAAC ATTTTCCTAA AAGGAAAACC 81585 |||||||||| ||| | ||| |||||||||| ||| |||||| ||||||||| |||||||||| AACCTTTTCC TACAAG-AAA AGGATTAGTC AATTCAAAAC CTTTTCCTAA AAGGAAAACC 655 TATGTATGGT AAGAAGTTTA GG 81607 ||| |||||| ||||| | | || TATTTATGGT AAGAA-ATCA GG 676 hqPGS_C04HBa0077O05.1+_SGN-E211090- (81166 81607) ******************************************************************************** EST sequence 3 +strand 302 n (File: SGN-E370622+) 1 TTTTTTTTTT TGATAACCTA GAAATATGCC TATGACCCGC CCCTTTGGAC TAATCACAAC 61 CTTCTAAACT CGGTGGATAA TGTTAGGACC GAAAATAAGC AGGTGTAAAC GCGGAAGCTA 121 GCAACGCAAA CCTCAAAATA CCACGAGTAA GACGACAACG AGAAATATAC CAAAAGACAC 181 AAAGATTTAA CGTGGTTCGG TCAATCGACC TACGTCCACA AAGGAGATGA GCAATCTACT 241 ATAAATATGA GAGTACAAAA TACAGAGAGA AACAACCTCA ACCAATTCAC TCGGAATACA 301 TG Predicted gene structure (within gDNA segment 79109 to 82078): Exon 1 81166 81387 ( 222 n); cDNA 81 302 ( 222 n); score: 0.923 PPA cDNA 11 1 MATCH C04HBa0077O05.1+ SGN-E370622+ 0.923 222 0.735 C PGS_C04HBa0077O05.1+_SGN-E370622+ (81166 81387) Alignment (genomic DNA sequence = upper lines): TGTTAGGATC GAAAATAAGT AGGTGTAAAT GCGGAAGCTA GCAAAGCAAA TCTCGAAAGA 81225 |||||||| | ||||||||| ||||||||| |||||||||| |||| ||||| ||| ||| | TGTTAGGACC GAAAATAAGC AGGTGTAAAC GCGGAAGCTA GCAACGCAAA CCTCAAAATA 140 TCACGAGTAA GAAGACAACG AGAAATATAC CAAAAGACAC AAAGATTTAA CGTGGTTCAG 81285 ||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||| | CCACGAGTAA GACGACAACG AGAAATATAC CAAAAGACAC AAAGATTTAA CGTGGTTCGG 200 TCAATCGACC TACATCCACA AAGGAGATGA GCAATTCACT ATAAATATGA TAGTACAATA 81345 |||||||||| ||| |||||| |||||||||| ||||| ||| |||||||||| ||||||| | TCAATCGACC TACGTCCACA AAGGAGATGA GCAATCTACT ATAAATATGA GAGTACAAAA 260 TACAGAGAGA AACAACCTCA ACCAATTCAC TCGTAATATA TG 81387 |||||||||| |||||||||| |||||||||| ||| |||| | || TACAGAGAGA AACAACCTCA ACCAATTCAC TCGGAATACA TG 302 hqPGS_C04HBa0077O05.1+_SGN-E370622+ (81166 81387) ******************************************************************************** EST sequence 64 +strand 574 n (File: SGN-E206285+) 1 AACTAAGTAG AGCTATGTAT ATTTTGTCTG CAGAAGCAAG GGCTTAATTT ACAACTATAG 61 GTGGCGTACG TATAATGCAT GGACCGAAAA ATAAGCAGGT GTAAACGCGG AAGCTAGCAA 121 TGCTAACATC GAAAGACCAC GAGTAAGAAG ACAACGAGAA ATATACCAAA AGACACAAAG 181 ATTTAACGTG GTTCGGTCAA TCGACCTATG TCCACAAAGG AGATGAGCAA TCCACTATAA 241 ATATGAGAGT ACAAAATACA GAGGGAAACA ATCTCAACCA ATTCACTCAG AATACATGGG 301 AGGTTCACAC AAGTAATAAC GTATCAAGCT TGTGACCCAC AAATTCTCCC TCTAACCAAA 361 ACTCTCAAAG CCCTTAAGAC TACATTGTGA ATGTTAACTA AGTTAAAAGG AACATGCCTC 421 TATTTATAGA ATCCTAAACC TTTCCCTACA AGAAAAGGAT TAGTCAATCC AAAACCTTTT 481 CCTACAAGGA AAATCTATTT ATGGTAAGAA ATTTAGAGCA AATAAAACCC AACAAACATC 541 TATGATACGT GAACTTGCTT GGCCCTATAT GTTT Predicted gene structure (within gDNA segment 79257 to 84091): Exon 1 81172 81606 ( 435 n); cDNA 82 516 ( 435 n); score: 0.893 MATCH C04HBa0077O05.1+ SGN-E206285+ 0.893 435 0.758 C PGS_C04HBa0077O05.1+_SGN-E206285+ (81172 81606) Alignment (genomic DNA sequence = upper lines): GATCGAAA-A TAAGTAGGTG TAAATGCGGA AGCTAGCAAA GCAAATCTCG AAAGATCACG 81230 || ||||| | |||| ||||| |||| ||||| ||||||||| || || ||| ||||| |||| GACCGAAAAA TAAGCAGGTG TAAACGCGGA AGCTAGCAAT GCTAACATCG AAAGACCACG 141 AGTAAGAAGA CAACGAGAAA TATACCAAAA GACACAAAGA TTTAACGTGG TTCAGTCAAT 81290 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| AGTAAGAAGA CAACGAGAAA TATACCAAAA GACACAAAGA TTTAACGTGG TTCGGTCAAT 201 CGACCTACAT CCACAAAGGA GATGAGCAAT TCACTATAAA TATGATAGTA CAATATACAG 81350 ||||||| | |||||||||| |||||||||| ||||||||| ||||| |||| ||| |||||| CGACCTATGT CCACAAAGGA GATGAGCAAT CCACTATAAA TATGAGAGTA CAAAATACAG 261 AGAGAAACAA CCTCAACCAA TTCACTCGTA ATATATGGGA GGTTCACACA AGTCATAACG 81410 || ||||||| ||||||||| ||||||| | ||| |||||| |||||||||| ||| |||||| AGGGAAACAA TCTCAACCAA TTCACTCAGA ATACATGGGA GGTTCACACA AGTAATAACG 321 TATCAAGCTT GTGAACCATA AATTCTCCCC CTAACCAAAA CTCTCAAAGC CTTTAAGAAT 81470 |||||||||| |||| ||| | ||||||||| |||||||||| |||||||||| | |||||| | TATCAAGCTT GTGACCCACA AATTCTCCCT CTAACCAAAA CTCTCAAAGC CCTTAAGACT 381 ATATTGTGAA TGTTGATTAA GTTAGAAATA ACATGTCTCT CTTTATAAAG TCCTAAACCT 81530 | |||||||| |||| | ||| |||| || | ||||| |||| |||||| | |||||||||| ACATTGTGAA TGTTAACTAA GTTAAAAGGA ACATGCCTCT ATTTATAGAA TCCTAAACCT 441 TTTCCTACCG GAAAAAGGAT TAGTCAATCC AAAACATTTT CCTAAAAGGA AAACCTATGT 81590 || ||||| | |||||||| |||||||||| ||||| |||| |||| ||||| ||| |||| | TTCCCTACAA G-AAAAGGAT TAGTCAATCC AAAACCTTTT CCTACAAGGA AAATCTATTT 500 ATGGTAAGAA GTTTAG 81606 |||||||||| ||||| ATGGTAAGAA ATTTAG 516 hqPGS_C04HBa0077O05.1+_SGN-E206285+ (81172 81606) ******************************************************************************** EST sequence 65 +strand 344 n (File: SGN-E206496+) 1 AACTAAGTAG AGCTATGTAT ATTTTGTCTG CAGAAGCAAT GGCTTAATTT ACAACTATAG 61 GTGGCGTACG TATAATGCAT GGACCGAAAA ATAAGCAGGT GTAAACGCGG AAGCTAGCAA 121 TGCTAACATC GAAAGACCAC GAGTAAGAAG ACAACGAGAA ATATACCAAA AGACACAAAG 181 ATTTAACGTG GTTCGGTCAA TCGACCTATG TCCACAAAGG AGATGAGCAA TCCACTATAA 241 ATATGAGAGT ACAAAATACA GAGGGAAACA ATCTCAACCA ATTCACTCAG AATACATGGG 301 AGGTTCACAC AAGTAATAAC GTATCAAGCT TGTGACCCAC AAAT Predicted gene structure (within gDNA segment 79257 to 82124): Exon 1 81172 81433 ( 262 n); cDNA 82 344 ( 263 n); score: 0.906 MATCH C04HBa0077O05.1+ SGN-E206496+ 0.906 262 0.762 C PGS_C04HBa0077O05.1+_SGN-E206496+ (81172 81433) Alignment (genomic DNA sequence = upper lines): GATCGAAA-A TAAGTAGGTG TAAATGCGGA AGCTAGCAAA GCAAATCTCG AAAGATCACG 81230 || ||||| | |||| ||||| |||| ||||| ||||||||| || || ||| ||||| |||| GACCGAAAAA TAAGCAGGTG TAAACGCGGA AGCTAGCAAT GCTAACATCG AAAGACCACG 141 AGTAAGAAGA CAACGAGAAA TATACCAAAA GACACAAAGA TTTAACGTGG TTCAGTCAAT 81290 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| AGTAAGAAGA CAACGAGAAA TATACCAAAA GACACAAAGA TTTAACGTGG TTCGGTCAAT 201 CGACCTACAT CCACAAAGGA GATGAGCAAT TCACTATAAA TATGATAGTA CAATATACAG 81350 ||||||| | |||||||||| |||||||||| ||||||||| ||||| |||| ||| |||||| CGACCTATGT CCACAAAGGA GATGAGCAAT CCACTATAAA TATGAGAGTA CAAAATACAG 261 AGAGAAACAA CCTCAACCAA TTCACTCGTA ATATATGGGA GGTTCACACA AGTCATAACG 81410 || ||||||| ||||||||| ||||||| | ||| |||||| |||||||||| ||| |||||| AGGGAAACAA TCTCAACCAA TTCACTCAGA ATACATGGGA GGTTCACACA AGTAATAACG 321 TATCAAGCTT GTGAACCATA AAT 81433 |||||||||| |||| ||| | ||| TATCAAGCTT GTGACCCACA AAT 344 hqPGS_C04HBa0077O05.1+_SGN-E206496+ (81172 81433) ******************************************************************************** EST sequence 218 -strand 490 n (File: SGN-E205772-) 1 GGTGTAAACG CGGAAGCTAG CAATACAAAC CTCGAAAGAC CACGAGTAAG AAGACAACGA 61 GAAATATATC AAAAGACACA AAGATTTAAC GTGGTTCGGT CAATCAACCT ACGTCCACAA 121 AGGAGATGAG CAATCCACTA TAAATATAAG AGTACAAAAT ACAGAGAGAA TCAACCTCAA 181 CCAATTCACT CAGAATACAT GGGAGGTTCA CACAAGTGAT AACATATCAA GCTTGTGACC 241 CACAGATTCT CCCTCTAACC AAAACTCTCA AAGCCTGTAA GAGTACATTG TGAATGCTGA 301 TTAAGTTAAA AGGAATATTC ATCTATTTAT AGAGTCCTAA ACCTTTTCCT ACAAGAAAAG 361 GATTAGTCAA TTCAAAACCT TTTCCTAAAA GGAAAACCTA TTTATGGTAA GAAATCAGGG 421 CAAATAAAAT CCAACAAGAT ACTTAAAAGA TGAGCAAGAG TGGCTAATGG ATTTAAATTA 481 ACAAATTGTT Predicted gene structure (within gDNA segment 80217 to 83078): Exon 1 81187 81607 ( 421 n); cDNA 1 419 ( 419 n); score: 0.893 MATCH C04HBa0077O05.1+ SGN-E205772- 0.893 421 0.859 C PGS_C04HBa0077O05.1+_SGN-E205772- (81187 81607) Alignment (genomic DNA sequence = upper lines): GGTGTAAATG CGGAAGCTAG CAAAGCAAAT CTCGAAAGAT CACGAGTAAG AAGACAACGA 81246 |||||||| | |||||||||| ||| |||| ||||||||| |||||||||| |||||||||| GGTGTAAACG CGGAAGCTAG CAATACAAAC CTCGAAAGAC CACGAGTAAG AAGACAACGA 60 GAAATATACC AAAAGACACA AAGATTTAAC GTGGTTCAGT CAATCGACCT ACATCCACAA 81306 |||||||| | |||||||||| |||||||||| ||||||| || ||||| |||| || ||||||| GAAATATATC AAAAGACACA AAGATTTAAC GTGGTTCGGT CAATCAACCT ACGTCCACAA 120 AGGAGATGAG CAATTCACTA TAAATATGAT AGTACAATAT ACAGAGAGAA ACAACCTCAA 81366 |||||||||| |||| ||||| ||||||| | ||||||| || |||||||||| ||||||||| AGGAGATGAG CAATCCACTA TAAATATAAG AGTACAAAAT ACAGAGAGAA TCAACCTCAA 180 CCAATTCACT CGTAATATAT GGGAGGTTCA CACAAGTCAT AACGTATCAA GCTTGTGAAC 81426 |||||||||| | |||| || |||||||||| ||||||| || ||| |||||| |||||||| | CCAATTCACT CAGAATACAT GGGAGGTTCA CACAAGTGAT AACATATCAA GCTTGTGACC 240 CATAAATTCT CCCCCTAACC AAAACTCTCA AAGCCTTTAA GAATATATTG TGAATGTTGA 81486 || | ||||| ||| |||||| |||||||||| |||||| ||| || || |||| |||||| ||| CACAGATTCT CCCTCTAACC AAAACTCTCA AAGCCTGTAA GAGTACATTG TGAATGCTGA 300 TTAAGTTAGA AATAACATGT CTCTCTTTAT AAAGTCCTAA ACCTTTTCCT ACCGGAAAAA 81546 |||||||| | | || || ||| ||||| | |||||||| |||||||||| || | |||| TTAAGTTAAA AGGAATATTC ATCTATTTAT AGAGTCCTAA ACCTTTTCCT ACAAG-AAAA 359 GGATTAGTCA ATCCAAAACA TTTTCCTAAA AGGAAAACCT ATGTATGGTA AGAAGTTTAG 81606 |||||||||| || |||||| |||||||||| |||||||||| || ||||||| |||| | || GGATTAGTCA ATTCAAAACC TTTTCCTAAA AGGAAAACCT ATTTATGGTA AGAA-ATCAG 418 G 81607 | G 419 hqPGS_C04HBa0077O05.1+_SGN-E205772- (81187 81607) ******************************************************************************** EST sequence 43 -strand 689 n (File: SGN-E540407-) 1 GAGAACAACA ACGATTAGGA ATGGCACGCT TATTTTTTCA CAAGCCACGG TTTGGAATCC 61 TTGACGAATG TACAAATGCT ACTAGTGTTG ATGTTGAAGA ACACCTGTAT AGGCTTGCTA 121 AGGATGCTGG CATTACTGTT GTTACATCCT CACAGCGCCC TGCTTTAATA CCTTTCCATT 181 CTGTGGAATT ACGGTTGATT GATGGTGAAG GCAAGTGGCA GCTGCTTTCA ATTAAGATGG 241 ATGAGGAGGG GGAAGACGAA CCAAATGAAT ACACACAACA ATTGTGAGTA CGATGATGTA 301 TTCCAATGTT GTGAAAACGT TCATAGAGCC AAAAATAATG AATGAATTAT GAATGTAATA 361 GTTTGCAGTT AGATTGAGGG TAGGAAACTA TATAGTTAGG GTATACAAAA ACTATTTTAA 421 GTTGTTTCTT GTAATATTTC ATATAGTTAA CTGTGTATAG CGCCTAGTTC CCGTCGTTGT 481 AAAAGGTTTA GGCATAATCT TTCCGGTCAG CTCTCCGTGA ATAAAAATGG CAGGTAGAAA 541 AGGAGGCTGA CAGATTAATT TACTTATATT ATCTTCTACA TTTTACAATG TATTTTGATG 601 ATATTTTTCT GTTTAAATAT ACCAAAAATT TAATGGAGTG TATATTTTTG CCCTCTCTAA 661 AAAAAAAAAA AAAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 87893 to 85331): Exon 1 87189 87167 ( 23 n); cDNA 1 23 ( 23 n); score: 1.000 Intron 1 87166 87063 ( 104 n); Pd: 0.961 (s: 0), Pa: 0.827 (s: 1.00) Exon 2 87062 87010 ( 53 n); cDNA 24 76 ( 53 n); score: 1.000 Intron 2 87009 86909 ( 101 n); Pd: 0.994 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 86908 86830 ( 79 n); cDNA 77 155 ( 79 n); score: 1.000 Intron 3 86829 86735 ( 95 n); Pd: 0.993 (s: 1.00), Pa: 0.714 (s: 1.00) Exon 4 86734 86232 ( 503 n); cDNA 156 658 ( 503 n); score: 0.998 PPA cDNA 659 689 MATCH C04HBa0077O05.1- SGN-E540407- 0.998 658 0.955 C PGS_C04HBa0077O05.1-_SGN-E540407- (87189 87167,87062 87010,86908 86830,86734 86232) Alignment (genomic DNA sequence = upper lines): GAGAACAACA ACGATTAGGA ATGGTGAGCT CAAAAAGTGC TGATTATTTT CTGACCCAAA 87130 |||||||||| |||||||||| ||| GAGAACAACA ACGATTAGGA ATG....... .......... .......... .......... 23 AACTTTGTTT AGAAATATAT TTCATATTTT GTTTCTTTGC TGCTAACTGA TTTGGCATTT 87070 .......... .......... .......... .......... .......... .......... 23 CTACAAGGCA CGCTTATTTT TTCACAAGCC ACGGTTTGGA ATCCTTGACG AATGTACAAA 87010 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GCA CGCTTATTTT TTCACAAGCC ACGGTTTGGA ATCCTTGACG AATGTACAAA 76 GTAAGTAAAC AAGCTCAGAT CTCAGTGTTC TCCAATTAGC ATATGGAAGC TTTTCTATGA 86950 .......... .......... .......... .......... .......... .......... 76 CCTCGTATAC CTGACCTTGC TATTTCCTCT TCTATTTGCA GTGCTACTAG TGTTGATGTT 86890 ||||||||| |||||||||| .......... .......... .......... .......... .TGCTACTAG TGTTGATGTT 95 GAAGAACACC TGTATAGGCT TGCTAAGGAT GCTGGCATTA CTGTTGTTAC ATCCTCACAG 86830 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAACACC TGTATAGGCT TGCTAAGGAT GCTGGCATTA CTGTTGTTAC ATCCTCACAG 155 GTTTGCATCC ATGTCTCATA TTGTCATCGG CATTTCTTAT GGCCATCATC AACCCATCTC 86770 .......... .......... .......... .......... .......... .......... 155 TTATCCAACT TTTTTCTTGC TCTGTTTTTC CTCAGCGCCC TGCTTTAATA CCTTTCCATT 86710 ||||| |||||||||| |||||||||| .......... .......... .......... .....CGCCC TGCTTTAATA CCTTTCCATT 180 CTGTGGAATT ACGGTTGATT GATGGTGAAG GCAAGTGGCA GCTGCGTTCA ATTAAGATGG 86650 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| CTGTGGAATT ACGGTTGATT GATGGTGAAG GCAAGTGGCA GCTGCTTTCA ATTAAGATGG 240 ATGAGGAGGG GGAAGACGAA CCAAATGAAT ACACACAACA ATTGTGAGTA CGATGATGTA 86590 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAGGAGGG GGAAGACGAA CCAAATGAAT ACACACAACA ATTGTGAGTA CGATGATGTA 300 TTCCAATGTT GTGAAAACGT TCATAGAGCC AAAAATAATG AATGAATTAT GAATGTAATA 86530 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCAATGTT GTGAAAACGT TCATAGAGCC AAAAATAATG AATGAATTAT GAATGTAATA 360 GTTTGCAGTT AGATTGAGGG TAGGAAACTA TATAGTTAGG GTATACAAAA ACTATTTTAA 86470 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGCAGTT AGATTGAGGG TAGGAAACTA TATAGTTAGG GTATACAAAA ACTATTTTAA 420 GTTGTTTCTT GTAATATTTC ATATAGTTAA CTGTGTATAG CGCCTAGTTC CCGTCGTTGT 86410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTTTCTT GTAATATTTC ATATAGTTAA CTGTGTATAG CGCCTAGTTC CCGTCGTTGT 480 AAAAGGTTTA GGCATAATCT TTCCGGTCAG CTCTCCGTGA ATAAAAATGG CAGGTAGAAA 86350 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGGTTTA GGCATAATCT TTCCGGTCAG CTCTCCGTGA ATAAAAATGG CAGGTAGAAA 540 AGGAGGCTGA CAGATTAATT TACTTATATT ATCTTCTACA TTTTACAATG TATTTTGATG 86290 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGGCTGA CAGATTAATT TACTTATATT ATCTTCTACA TTTTACAATG TATTTTGATG 600 ATATTTTTCT GTTTAAATAT ACCAAAAATT TAATGGAGTG TATATTTTTG CCCTCTCT 86232 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ATATTTTTCT GTTTAAATAT ACCAAAAATT TAATGGAGTG TATATTTTTG CCCTCTCT 658 hqPGS_C04HBa0077O05.1-_SGN-E540407- (87189 87167,87062 87010,86908 86830,86734 86232) ******************************************************************************** EST sequence 71 -strand 480 n (File: SGN-E288286-) 1 AGGCAAGTGG CAGCTGCTTT CAATTAAGAT GGATGAGGAG GGGGAAGCCG AACCAAATGA 61 ATACACCCAC CAATTGTGAG TACGATGATG TATTCCAATG TTGTGAAAAC GTTCATAGAG 121 CCAAAAATAA TGAATCACTT ATGAATGTAA TAGTTTGCAG TTAGATTGAG GGTAGGAAAC 181 TATATAGTTA GGGTATACAA AAACTATTTT AAGTTGTTTC TTGTAATATT TCATATAGTT 241 AACTGTGTAT AGCGCCTAGT TCCCGTCGTT GTAAAAGGTT TAGGCATAAT CTTTCCGGTC 301 AGCTCTCCGT GAATAAAAAT GGCAGGTAGA AAAGGAGGCT GACAGATTAA TTTACTTATA 361 TTATCTTCTA CATTTTACAA TGTATTTTGA TGATATTTTT CTGTTTAAAT ATACCAAAAA 421 TTTAATGGAG TGTATATTTT TGCCCTCTCT AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 87291 to 85341): Exon 1 86681 86232 ( 450 n); cDNA 1 450 ( 450 n); score: 0.987 PPA cDNA 451 480 MATCH C04HBa0077O05.1- SGN-E288286- 0.987 450 0.938 C PGS_C04HBa0077O05.1-_SGN-E288286- (86681 86232) Alignment (genomic DNA sequence = upper lines): AGGCAAGTGG CAGCTGCGTT CAATTAAGAT GGATGAGGAG GGGGAAGACG AACCAAATGA 86622 |||||||||| ||||||| || |||||||||| |||||||||| ||||||| || |||||||||| AGGCAAGTGG CAGCTGCTTT CAATTAAGAT GGATGAGGAG GGGGAAGCCG AACCAAATGA 60 ATACACACAA CAATTGTGAG TACGATGATG TATTCCAATG TTGTGAAAAC GTTCATAGAG 86562 |||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACACCCAC CAATTGTGAG TACGATGATG TATTCCAATG TTGTGAAAAC GTTCATAGAG 120 CCAAAAATAA TGAATGAATT ATGAATGTAA TAGTTTGCAG TTAGATTGAG GGTAGGAAAC 86502 |||||||||| ||||| | || |||||||||| |||||||||| |||||||||| |||||||||| CCAAAAATAA TGAATCACTT ATGAATGTAA TAGTTTGCAG TTAGATTGAG GGTAGGAAAC 180 TATATAGTTA GGGTATACAA AAACTATTTT AAGTTGTTTC TTGTAATATT TCATATAGTT 86442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATATAGTTA GGGTATACAA AAACTATTTT AAGTTGTTTC TTGTAATATT TCATATAGTT 240 AACTGTGTAT AGCGCCTAGT TCCCGTCGTT GTAAAAGGTT TAGGCATAAT CTTTCCGGTC 86382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTGTGTAT AGCGCCTAGT TCCCGTCGTT GTAAAAGGTT TAGGCATAAT CTTTCCGGTC 300 AGCTCTCCGT GAATAAAAAT GGCAGGTAGA AAAGGAGGCT GACAGATTAA TTTACTTATA 86322 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCTCCGT GAATAAAAAT GGCAGGTAGA AAAGGAGGCT GACAGATTAA TTTACTTATA 360 TTATCTTCTA CATTTTACAA TGTATTTTGA TGATATTTTT CTGTTTAAAT ATACCAAAAA 86262 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCTTCTA CATTTTACAA TGTATTTTGA TGATATTTTT CTGTTTAAAT ATACCAAAAA 420 TTTAATGGAG TGTATATTTT TGCCCTCTCT 86232 |||||||||| |||||||||| |||||||||| TTTAATGGAG TGTATATTTT TGCCCTCTCT 450 hqPGS_C04HBa0077O05.1-_SGN-E288286- (86681 86232) ******************************************************************************** EST sequence 264 +strand 740 n (File: SGN-E332610+) 1 CATTTCAGTG GATCAACATT TGTTACTGGC ATTGACCATC TGATTTCTAC CATGTTCAAC 61 AATAGTTGCC ATAATTGTCC AGTAACAGGA CAATGAATGA ATAGGTGACA TTATTTTCCC 121 CAGCAGCTCC GCCCATAAAG CATCTAGAAC ACAATTGGAA TCCCCTTCTT TGAAGTTTAT 181 CCTGTGTGAG GCAAGCAGTT CTTGCTATTA GCCAAGAAAA GCATACCATC TTAACAGGAG 241 CCTTCATTTT CCAAATGGAT CTCCATGGCC ACTGATTATT TGACTGTCTG TGCCTAAGCA 301 GAATGTTATG AGTTAAGTTT TCAGAATAAG TTCTTTTACT AGTGGGCTTC CATATAAGTG 361 AATCTAAAGT ATCTTTGAAC CCTTGGAATG ATTCCAAGGT CTTGAAAAAT TTCAACAACT 421 CGTTCCAACT CTCAATCTTG CAGTAGCCTT CTAAAAGTAA TATTCCATCA GTGTAATCCT 481 TTTGCTGAAT CCAGACTAAT GACTCGCATA GTGGCAATGC TAAAGAATTC AGGAAGGAGT 541 TCCTTTAGAG GTCCATGCCC TAGCCAATTA TCACACCAAA AAAGAATTTT ACTACCATTT 601 GCGCACTCTT AAACTAGTTT TTCCAGCCAT CAAAGACCAG AGGGATCTGA TTGCTTTCCA 661 GACTTTTACA CCATGAGGGC TCACAACTAC CTTTGAACAC CATGGGGTTG TGTCTGTTAT 721 GGTTGAACGT TTGATTGCAA Predicted gene structure (within gDNA segment 126507 to 119232): Exon 1 126176 126039 ( 138 n); cDNA 1 137 ( 137 n); score: 0.754 Intron 1 126038 124385 (1654 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0.96) Exon 2 124384 124226 ( 159 n); cDNA 138 296 ( 159 n); score: 0.821 Intron 2 124225 123322 ( 904 n); Pd: 0.000 (s: 0.72), Pa: 0.026 (s: 0.52) Exon 3 123321 123119 ( 203 n); cDNA 297 504 ( 208 n); score: 0.704 Intron 3 123118 122724 ( 395 n); Pd: 0.000 (s: 0.86), Pa: 0.987 (s: 0) Exon 4 122723 122711 ( 13 n); cDNA 505 516 ( 12 n); score: 0.538 Intron 4 122710 121744 ( 967 n); Pd: 0.404 (s: 0), Pa: 0.975 (s: 0) Exon 5 121743 121736 ( 8 n); cDNA 517 524 ( 8 n); score: 0.750 MATCH C04HBa0077O05.1- SGN-E332610+ 0.755 521 0.704 C PGS_C04HBa0077O05.1-_SGN-E332610+ (126176 126039,124384 124226,123321 123119,122723 122711,121743 121736) Alignment (genomic DNA sequence = upper lines): CATTTCAATG AATCACAACT TGTTGCTGGC GTAGACCATC TTAGTCCTAT CAAGTACAAA 126117 ||||||| || |||| | | |||| ||||| | ||||||| | | | ||| || || ||| CATTTCAGTG GATCAACATT TGTTACTGGC ATTGACCATC TGATTTCTAC CATGTTCAAC 60 AAAAGTTGCC ACAATTGTCC AGTTATGGGA CAATGTAGAA ACAGATGGCA ATTGTTTTCT 126057 || ||||||| | |||||||| ||| | ||| ||||| | | | || || | ||| ||||| AATAGTTGCC ATAATTGTCC AGTAACAGGA CAATGAATGA ATAGGTGAC- ATTATTTTCC 119 CCGGCTGCAC CACACATACA ACATCTAGAG CATAGATGAA ATCCCCTTCT TCTTAAGTTT 125997 || || || | | | |||| CCAGCAGCTC CGCCCATA.. .......... .......... .......... .......... 137 TCTTGAGTGA GACGTGCTTC TCTTGCTACA AGCCAAGAAA AACACAAGAC TTTGTAAGGG 125937 .......... .......... .......... .......... .......... .......... 137 GCCTTAGTCT TCCAGATGAA CTTCCATGGC AACTGGTCAA ATTGTGCATT TTGTCTAATC 125877 .......... .......... .......... .......... .......... .......... 137 TGGTGGTTGT ATGCAGATTT GACTGTGTAG ACTCCATCAC TTCCAGATTT CCAGCACAAC 125817 .......... .......... .......... .......... .......... .......... 137 CTATCCTTAG ATTCTTTGAA GCATTGGAAA GATTCCAACT TTCAAAGTCT TAAACAAGTC 125757 .......... .......... .......... .......... .......... .......... 137 CACGACTCTT TCCAATTCCC AGTCATGTAA TAATCTCTTA TAGAAGTAAT ACTCCACCCA 125697 .......... .......... .......... .......... .......... .......... 137 TGTACTCTTT TAGCTGATTC AAGGTTAATA TCTGGTAACG TAGCCAAGAA TAAAACAAAA 125637 .......... .......... .......... .......... .......... .......... 137 ATATACAATT CATCTTGATT TTCCCACAAC TGTATGTCTT AAAAAGCTCT ATAGTTCCTC 125577 .......... .......... .......... .......... .......... .......... 137 TCCTTCCAAA TGGTCCACCA AGCAGGACAA GTTTCCACCA ATTTTTCTGG CTAACTGCCC 125517 .......... .......... .......... .......... .......... .......... 137 CATCATTCTC GTTCCAACAT TTCAGTAAAT CAACACTTGT TGCTGGCATT GACCATCTGA 125457 .......... .......... .......... .......... .......... .......... 137 GTCCTACCAT GTCAAGAATA GTTGTCATAA TTGTGAGTTA ATATCTCACG AGGTCATTCA 125397 .......... .......... .......... .......... .......... .......... 137 ACTTTAGGAA TTTATCTAGT AAAGTCATTG AACTTTGTTT TATATCAAAA AAATCACCCA 125337 .......... .......... .......... .......... .......... .......... 137 ACTTAGATAT TTATATCAAT AAAATCACTC AACTAAATGT ATTATAGTTA AATATATGAC 125277 .......... .......... .......... .......... .......... .......... 137 ATTATTTTTA TTGATCCACA TACAATTGGA CCCAAATTTA TTAATGATTC TACCTTTTAA 125217 .......... .......... .......... .......... .......... .......... 137 CCCAGTTAAG AAACTATGTT TTGTTTCTTG ACAATCTATG CACTCCAAAT GGCTCGTCAT 125157 .......... .......... .......... .......... .......... .......... 137 GAGCATAGGC CATGGGATTA AACCCCTTCA GTACACGGTC TCCACATAGA GCACCATCAC 125097 .......... .......... .......... .......... .......... .......... 137 CTAAAACACC ATAAAAGTAT GACATACCAA TCTACAAACA CACAGACGGT GGGTAAAAAG 125037 .......... .......... .......... .......... .......... .......... 137 GGTAAGTTTA TTAGCTTGGT CAATGCAGAT TGCTGATTGT TATCCCACTG GTGATAAACG 124977 .......... .......... .......... .......... .......... .......... 137 TGAAAAAGGG GACAAATTGA AGAGTTCTGT CAATCCAGCG AGCACAATGT TGTTAAATAA 124917 .......... .......... .......... .......... .......... .......... 137 ACAAGTTTTG GGTTTTCTTT TTGTTTCTTT TATGTTAATG ACTTATGAGT CAAATTTTCA 124857 .......... .......... .......... .......... .......... .......... 137 CATTTATGTT TATGAAGTTG AAATGTAATA AACTAACGAA GTTAATTTTT AGAAGTATGA 124797 .......... .......... .......... .......... .......... .......... 137 GATTACAATT CGTGCAATAG TTACAAATGA ACAGCCACAA TCGATAAATT ACAGAATACA 124737 .......... .......... .......... .......... .......... .......... 137 AAAAGATGCA TATATAACAG TATAAATCAA AGGAGTTAAA TCAACAAAAC AAAATAAACG 124677 .......... .......... .......... .......... .......... .......... 137 GATCGACATG AAATTAGAGG AGAAACTCAC AACTCCGGTG GGAGAGTAGT TGGTGAATGA 124617 .......... .......... .......... .......... .......... .......... 137 ATTTGGTTCC GATTGCATGT GGATCAATCA AAATAATATC ATATATTTAA TTGAGTAATT 124557 .......... .......... .......... .......... .......... .......... 137 TTATTGATAC ATACAACTAA GTTGAGTGAT TTTATTGATA CAAACAACTA AGTTGAGTGA 124497 .......... .......... .......... .......... .......... .......... 137 TTTTATTGAT ACAAAATAAA ATTTAATGAC TTTGTTATAT AAATTTCAAA GTTGAGTGAC 124437 .......... .......... .......... .......... .......... .......... 137 CTTTTGTGAT ATTAACTCCA TAATTGTCTA GTAACAAGAC AATGAGTGAG GCAAGTATCT 124377 ||| |||| .......... .......... .......... .......... .......... ..AAGCATCT 145 AGAACACAGT TGGAATCCCC TTCTTTGAAG TTTATCCTGT GTGAGGCAAG TCTCTCTTGG 124317 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| ||||| AGAACACAAT TGGAATCCCC TTCTTTGAAG TTTATCCTGT GTGAGGCAAG CAGTTCTTGC 205 TATTAGCCAA GAAAAGTATA CCACCCTAAA AGGAGCCTTT A-TCTCCAAA TGGATCTCCA 124258 |||||||||| |||||| ||| ||| | ||| ||||||||| | | |||||| |||||||||| TATTAGCCAA GAAAAGCATA CCATCTTAAC AGGAGCCTTC ATTTTCCAAA TGGATCTCCA 265 TGGTCACTGA GTTTATTAGC TGAGTTTGTT AGGTGCTCTT TCCTTTATTT GACAGTCCAA 124198 ||| |||||| || || | || | || TGGCCACTGA -TTATTTGAC TGTCTGTGCC TA........ .......... .......... 296 AAAAGATTAG GAACTCTTTG ATCTTAACAT TCTCATTTCG CTCTTGCTCT TAAACGCTTT 124138 .......... .......... .......... .......... .......... .......... 296 GATATGATTT ATCAGGGACT CCACCGCAGA GATACATTTA GTATTTTATG CATATATTCA 124078 .......... .......... .......... .......... .......... .......... 296 GCGAAATAAG AAAAAGGAAA GTAATAAATT CTTAAGGGAC GTGGGGGACC ACTTCCTTTT 124018 .......... .......... .......... .......... .......... .......... 296 TTCTCCTTTT TTTTCTTCCT TGTTTTGTGC ATTGTTATTT TGTTGTCTCT TTTTCTCTAA 123958 .......... .......... .......... .......... .......... .......... 296 CTTCCCTGCT TGTTTGAGGG TCATATCGGA AATAATCTAT TTGCCCCACA AATGTAGAGT 123898 .......... .......... .......... .......... .......... .......... 296 AAGGTCTACA CTCTGCATAC ATCCCCATCT TCCCCAGACC TCACTTGTGG GATTAAAACG 123838 .......... .......... .......... .......... .......... .......... 296 GGTGTGATGT TGTTGTTGAC GTGTGGGAAG CAATTAATGT AGAAAGTTAA GGTGGAACTC 123778 .......... .......... .......... .......... .......... .......... 296 ATTGGCCACC CTTAAAAGTT GGCCCCAGCT TTCACTTAGA CACCTTGAGT ATGACTTGTT 123718 .......... .......... .......... .......... .......... .......... 296 CATTTTAAAC ACACTTAGTA GGGCCCCGTT GTGTCATTTG ACACTTTTTG CTGATATGGC 123658 .......... .......... .......... .......... .......... .......... 296 ATAGTGAGTG TGATACACTC ATGAATGACG TGTGCAAGGC TTATATTTAG CAAATTTTTA 123598 .......... .......... .......... .......... .......... .......... 296 TTATATTTAT CTCTTCTCCA TTTTTCAAGA CACACTACCT CCACTGTTTC CCCAAGCTTA 123538 .......... .......... .......... .......... .......... .......... 296 AACTCCTTCA GTGGAGGTCG GATTTTCGAA TCTGTTCTCA GAAAAGAAAA AAGAACAGAT 123478 .......... .......... .......... .......... .......... .......... 296 CTGAAACAAT AAAAAGAAAG AATAGATTTC AAAAACAAAC ACAAACTTAA AGTGGGAATG 123418 .......... .......... .......... .......... .......... .......... 296 AGGAAAAAGA ACTAAAGGGA AAGTAAATGA TGTTTTCACA CTTAGAACTA TCAAAGACTC 123358 .......... .......... .......... .......... .......... .......... 296 CATTTTCTTT AACCCAATTC AATTTTTTGT TATTAGATGA GAACATCAAC TCTTCGATTC 123298 | | ||| | | || || .......... .......... .......... ......AGCA GAATGTTATG AGTTAAGTTT 320 TAATGATTCG TCAATTGTTT ACTGGTGGGC TTCCATATAA GTTAATCTAC AGTATTTTTG 123238 | | || | | | ||| ||| |||||| |||||||||| || |||||| ||||| |||| TCAGAATAAG T---TCTTTT ACTAGTGGGC TTCCATATAA GTGAATCTAA AGTATCTTTG 377 AACCCTTGGA ATGATTCCAA GGTC------ --TTTCAACA ACTCTTTCCA GCTCCCAGTT 123186 |||||||||| |||||||||| |||| |||||||| |||| ||||| ||| || | AACCCTTGGA ATGATTCCAA GGTCTTGAAA AATTTCAACA ACTCGTTCCA ACTCTCAATC 437 ATGCAGTAGC CTTCTAAAAG TAATATCCCA TCCTTGTACT CCTTTTGCTG ATTCCAGACT 123126 ||||||||| |||||||||| |||||| ||| || |||| | |||||||||| | |||||||| TTGCAGTAGC CTTCTAAAAG TAATATTCCA TCAGTGTAAT CCTTTTGCTG AATCCAGACT 497 AATATCTGCT AATTGCTAGA CTACCAGCAG TCTATCCATT GTGATTACTT CCTGGAGAGA 123066 ||| || AATGACT... .......... .......... .......... .......... .......... 504 GGGAAGCAAG TTGGATATGA AGTAATTATC TAGTATACAG CAAGTGACGC AAGTATGTGA 123006 .......... .......... .......... .......... .......... .......... 504 TTTCTTTAAA TAGTGAAAGA ATTAGAGTGA TGAGGCAAGT ATCTAGTAAG GAGTTCTCTT 122946 .......... .......... .......... .......... .......... .......... 504 TGGAACTTCC ATGAAATTCA CAAATGATTA GTTTTTTTAA TTCTTAGCAG CATCAAATGT 122886 .......... .......... .......... .......... .......... .......... 504 TTGTTTAACC CTTTTCTTCC ATGATCCTGT TTGTTATTCT CTACAGTTGT AACTTCAACT 122826 .......... .......... .......... .......... .......... .......... 504 TAGCATTACC TAGATGTCGT TTGAGTTATC CTGCTTATCC TTGGGTTCAC TTTTAGTTGA 122766 .......... .......... .......... .......... .......... .......... 504 GAGACCTTTC TGCCTATGAG TTCTTGGTTG TTGGTTTTGT AGAGCAGAAT GAGTGGTAAT 122706 ||| | | | | .......... .......... .......... .......... ..CGCATAGT G-GCA..... 516 ACCATGGTCC ATATCCATAA CAGAGAGTCA ATGTTAACTA TATGCCCCTG TTTCTTATCT 122646 .......... .......... .......... .......... .......... .......... 516 TTCTTTGTTT TGTTTGTGTT TTTCTTTTGA TCTTAAAATT TGGCGATTCT TCTTTATCAA 122586 .......... .......... .......... .......... .......... .......... 516 AATTGAATAA TATCAATAAA TTTGATGATC CTAATTTTCA TAATGAACAC CATTTAGACT 122526 .......... .......... .......... .......... .......... .......... 516 CTTGCAATGT ACTCAAATCG TTATCTAAGC ATATCTTTTG TGAGTAATAC CTTCTCTTTG 122466 .......... .......... .......... .......... .......... .......... 516 GGGTCTCAAT ATCTACTGTT TAGATAACAA TTTCAGTTCA TTGCAAGAGT CTAAATGGCT 122406 .......... .......... .......... .......... .......... .......... 516 CTGCTAGCTA TGTCGACTTT CAGCGGAACC CATTTGCAGC CTTTAAAGTT GACACCAACT 122346 .......... .......... .......... .......... .......... .......... 516 TTCACTAAGA CACCTCAAGT ATTCATAGTC TAATTATTTT TGAAACTGGA ATAGGCCTAC 122286 .......... .......... .......... .......... .......... .......... 516 GACCATTTTA AACACCCGTA GTAGCGGTCC AGTGTGTCAT TTTGGCAATC ATCAAAAATA 122226 .......... .......... .......... .......... .......... .......... 516 TTGAGGAGAG TGTAATATGA GTTGCTGATA ACATGGCAAG CAACTAATTA AATGATAACA 122166 .......... .......... .......... .......... .......... .......... 516 TGTGACATTT TTAGTAAAAG AAAAAAAGAA GAAACTATTT TAATATCTAT TTAATAAATA 122106 .......... .......... .......... .......... .......... .......... 516 AAACAAAAAT ACTTTTCTAA TAAAAATAGT TTACACAGCT CCTCGCAATA CTCACCATGT 122046 .......... .......... .......... .......... .......... .......... 516 TGTCCCATAC CTCTCAACCC TTTCTATCTC TTACAGAAAT AATCATTTAA CAAAGAAGTA 121986 .......... .......... .......... .......... .......... .......... 516 CAAGTCTTTA ACATAAAAAA TTGACGAATC ATTAGAATCA AAGAGTTGAT GTTCTCATCT 121926 .......... .......... .......... .......... .......... .......... 516 AATAACAAAA AAATGAATTG GGTTAAAGAA AATGGAGTCT TTGATAGTTC TAAGTGTGAA 121866 .......... .......... .......... .......... .......... .......... 516 TTCACCATTT ACTTCCCCTT TAGTTCTTTT CCTCATTCCC ACTTTAAGTT TGTGTTTGTT 121806 .......... .......... .......... .......... .......... .......... 516 TTTGGAATCT GTTCTTTCTT TTTATTGTTT CAGATCTGTT CTTTTTTCTT TTCTGAGAAC 121746 .......... .......... .......... .......... .......... .......... 516 AGATTCGAAA 121736 || | ||| ..ATGCTAAA 524 hqPGS_C04HBa0077O05.1-_SGN-E332610+ (126176 126039,124384 124226,123321 123119) ******************************************************************************** EST sequence 281 +strand 757 n (File: SGN-E334018+) 1 CATTTCAGTG GATCAACATT TGTTACTGGC ATTGACCATC TGATTTCTAC CATGTTCAAC 61 AATAGTTGCC ATAATTGTCC AGTAACAGGA CAATGAATGA ATAGGTGACA TTATTTTCCC 121 CAGCAGCTCC GCCCATAAAG CATCTAGAAC ACAATTGGAA TCCCCTTCTT TGAAGTTTAT 181 CCTGTGTGAG GCAAGCAGTT CTTGCTATTA GCCAAGAAAA GCATACCATC TTAACAGGAG 241 CCTTCATTTT CCAAATGGAT CTCCATGGCC ACTGATTATT TGACTGTCTG TGCCTAAGCA 301 GAATGTTATG AGTTAAGTTT TCAGAATAAG TTCTTTTACT AGTGGGCTTC CATATAAGTG 361 AATCTAAAGT ATCTTTGAAC CCTTGGAATG ATTCCAAGGT CTTGAAAAAT TTCAACAACT 421 CGTTCCAACT CTCAATCTTG CAGTAGCCTT CTAAAAGTAA TATTCCATCA GTGTAATCCT 481 TTTGCTGAAT CCAGACTAAT GACTCGCATA GTGGCAATGC TAAAGAATTC AGGAAGGAGT 541 TCCTTTAGAG GTCCATGCCC TAGCCAATTA TCACACCAAA AAAGAATTTT ACTACCATTT 601 GCGCACTCTT AAACTAGTTT TTCCAGCCAT CAAAGACCAG AGGGATCTGA TTGCTTTCCA 661 GACTTTTACA CCATGAGGGC TCACAACTAC CTTTGAACAC CATGGGGTTG TGTCTGTTAT 721 GGTTGAACGT TTGATTGCAA AGGCAATTCA TAAGTTC Predicted gene structure (within gDNA segment 126507 to 119062): Exon 1 126176 126039 ( 138 n); cDNA 1 137 ( 137 n); score: 0.754 Intron 1 126038 124385 (1654 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0.96) Exon 2 124384 124226 ( 159 n); cDNA 138 296 ( 159 n); score: 0.821 Intron 2 124225 123322 ( 904 n); Pd: 0.000 (s: 0.72), Pa: 0.026 (s: 0.52) Exon 3 123321 123119 ( 203 n); cDNA 297 504 ( 208 n); score: 0.704 Intron 3 123118 122724 ( 395 n); Pd: 0.000 (s: 0.86), Pa: 0.987 (s: 0) Exon 4 122723 122711 ( 13 n); cDNA 505 516 ( 12 n); score: 0.538 Intron 4 122710 121744 ( 967 n); Pd: 0.404 (s: 0), Pa: 0.975 (s: 0) Exon 5 121743 121736 ( 8 n); cDNA 517 524 ( 8 n); score: 0.750 MATCH C04HBa0077O05.1- SGN-E334018+ 0.755 521 0.688 C PGS_C04HBa0077O05.1-_SGN-E334018+ (126176 126039,124384 124226,123321 123119,122723 122711,121743 121736) Alignment (genomic DNA sequence = upper lines): CATTTCAATG AATCACAACT TGTTGCTGGC GTAGACCATC TTAGTCCTAT CAAGTACAAA 126117 ||||||| || |||| | | |||| ||||| | ||||||| | | | ||| || || ||| CATTTCAGTG GATCAACATT TGTTACTGGC ATTGACCATC TGATTTCTAC CATGTTCAAC 60 AAAAGTTGCC ACAATTGTCC AGTTATGGGA CAATGTAGAA ACAGATGGCA ATTGTTTTCT 126057 || ||||||| | |||||||| ||| | ||| ||||| | | | || || | ||| ||||| AATAGTTGCC ATAATTGTCC AGTAACAGGA CAATGAATGA ATAGGTGAC- ATTATTTTCC 119 CCGGCTGCAC CACACATACA ACATCTAGAG CATAGATGAA ATCCCCTTCT TCTTAAGTTT 125997 || || || | | | |||| CCAGCAGCTC CGCCCATA.. .......... .......... .......... .......... 137 TCTTGAGTGA GACGTGCTTC TCTTGCTACA AGCCAAGAAA AACACAAGAC TTTGTAAGGG 125937 .......... .......... .......... .......... .......... .......... 137 GCCTTAGTCT TCCAGATGAA CTTCCATGGC AACTGGTCAA ATTGTGCATT TTGTCTAATC 125877 .......... .......... .......... .......... .......... .......... 137 TGGTGGTTGT ATGCAGATTT GACTGTGTAG ACTCCATCAC TTCCAGATTT CCAGCACAAC 125817 .......... .......... .......... .......... .......... .......... 137 CTATCCTTAG ATTCTTTGAA GCATTGGAAA GATTCCAACT TTCAAAGTCT TAAACAAGTC 125757 .......... .......... .......... .......... .......... .......... 137 CACGACTCTT TCCAATTCCC AGTCATGTAA TAATCTCTTA TAGAAGTAAT ACTCCACCCA 125697 .......... .......... .......... .......... .......... .......... 137 TGTACTCTTT TAGCTGATTC AAGGTTAATA TCTGGTAACG TAGCCAAGAA TAAAACAAAA 125637 .......... .......... .......... .......... .......... .......... 137 ATATACAATT CATCTTGATT TTCCCACAAC TGTATGTCTT AAAAAGCTCT ATAGTTCCTC 125577 .......... .......... .......... .......... .......... .......... 137 TCCTTCCAAA TGGTCCACCA AGCAGGACAA GTTTCCACCA ATTTTTCTGG CTAACTGCCC 125517 .......... .......... .......... .......... .......... .......... 137 CATCATTCTC GTTCCAACAT TTCAGTAAAT CAACACTTGT TGCTGGCATT GACCATCTGA 125457 .......... .......... .......... .......... .......... .......... 137 GTCCTACCAT GTCAAGAATA GTTGTCATAA TTGTGAGTTA ATATCTCACG AGGTCATTCA 125397 .......... .......... .......... .......... .......... .......... 137 ACTTTAGGAA TTTATCTAGT AAAGTCATTG AACTTTGTTT TATATCAAAA AAATCACCCA 125337 .......... .......... .......... .......... .......... .......... 137 ACTTAGATAT TTATATCAAT AAAATCACTC AACTAAATGT ATTATAGTTA AATATATGAC 125277 .......... .......... .......... .......... .......... .......... 137 ATTATTTTTA TTGATCCACA TACAATTGGA CCCAAATTTA TTAATGATTC TACCTTTTAA 125217 .......... .......... .......... .......... .......... .......... 137 CCCAGTTAAG AAACTATGTT TTGTTTCTTG ACAATCTATG CACTCCAAAT GGCTCGTCAT 125157 .......... .......... .......... .......... .......... .......... 137 GAGCATAGGC CATGGGATTA AACCCCTTCA GTACACGGTC TCCACATAGA GCACCATCAC 125097 .......... .......... .......... .......... .......... .......... 137 CTAAAACACC ATAAAAGTAT GACATACCAA TCTACAAACA CACAGACGGT GGGTAAAAAG 125037 .......... .......... .......... .......... .......... .......... 137 GGTAAGTTTA TTAGCTTGGT CAATGCAGAT TGCTGATTGT TATCCCACTG GTGATAAACG 124977 .......... .......... .......... .......... .......... .......... 137 TGAAAAAGGG GACAAATTGA AGAGTTCTGT CAATCCAGCG AGCACAATGT TGTTAAATAA 124917 .......... .......... .......... .......... .......... .......... 137 ACAAGTTTTG GGTTTTCTTT TTGTTTCTTT TATGTTAATG ACTTATGAGT CAAATTTTCA 124857 .......... .......... .......... .......... .......... .......... 137 CATTTATGTT TATGAAGTTG AAATGTAATA AACTAACGAA GTTAATTTTT AGAAGTATGA 124797 .......... .......... .......... .......... .......... .......... 137 GATTACAATT CGTGCAATAG TTACAAATGA ACAGCCACAA TCGATAAATT ACAGAATACA 124737 .......... .......... .......... .......... .......... .......... 137 AAAAGATGCA TATATAACAG TATAAATCAA AGGAGTTAAA TCAACAAAAC AAAATAAACG 124677 .......... .......... .......... .......... .......... .......... 137 GATCGACATG AAATTAGAGG AGAAACTCAC AACTCCGGTG GGAGAGTAGT TGGTGAATGA 124617 .......... .......... .......... .......... .......... .......... 137 ATTTGGTTCC GATTGCATGT GGATCAATCA AAATAATATC ATATATTTAA TTGAGTAATT 124557 .......... .......... .......... .......... .......... .......... 137 TTATTGATAC ATACAACTAA GTTGAGTGAT TTTATTGATA CAAACAACTA AGTTGAGTGA 124497 .......... .......... .......... .......... .......... .......... 137 TTTTATTGAT ACAAAATAAA ATTTAATGAC TTTGTTATAT AAATTTCAAA GTTGAGTGAC 124437 .......... .......... .......... .......... .......... .......... 137 CTTTTGTGAT ATTAACTCCA TAATTGTCTA GTAACAAGAC AATGAGTGAG GCAAGTATCT 124377 ||| |||| .......... .......... .......... .......... .......... ..AAGCATCT 145 AGAACACAGT TGGAATCCCC TTCTTTGAAG TTTATCCTGT GTGAGGCAAG TCTCTCTTGG 124317 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| ||||| AGAACACAAT TGGAATCCCC TTCTTTGAAG TTTATCCTGT GTGAGGCAAG CAGTTCTTGC 205 TATTAGCCAA GAAAAGTATA CCACCCTAAA AGGAGCCTTT A-TCTCCAAA TGGATCTCCA 124258 |||||||||| |||||| ||| ||| | ||| ||||||||| | | |||||| |||||||||| TATTAGCCAA GAAAAGCATA CCATCTTAAC AGGAGCCTTC ATTTTCCAAA TGGATCTCCA 265 TGGTCACTGA GTTTATTAGC TGAGTTTGTT AGGTGCTCTT TCCTTTATTT GACAGTCCAA 124198 ||| |||||| || || | || | || TGGCCACTGA -TTATTTGAC TGTCTGTGCC TA........ .......... .......... 296 AAAAGATTAG GAACTCTTTG ATCTTAACAT TCTCATTTCG CTCTTGCTCT TAAACGCTTT 124138 .......... .......... .......... .......... .......... .......... 296 GATATGATTT ATCAGGGACT CCACCGCAGA GATACATTTA GTATTTTATG CATATATTCA 124078 .......... .......... .......... .......... .......... .......... 296 GCGAAATAAG AAAAAGGAAA GTAATAAATT CTTAAGGGAC GTGGGGGACC ACTTCCTTTT 124018 .......... .......... .......... .......... .......... .......... 296 TTCTCCTTTT TTTTCTTCCT TGTTTTGTGC ATTGTTATTT TGTTGTCTCT TTTTCTCTAA 123958 .......... .......... .......... .......... .......... .......... 296 CTTCCCTGCT TGTTTGAGGG TCATATCGGA AATAATCTAT TTGCCCCACA AATGTAGAGT 123898 .......... .......... .......... .......... .......... .......... 296 AAGGTCTACA CTCTGCATAC ATCCCCATCT TCCCCAGACC TCACTTGTGG GATTAAAACG 123838 .......... .......... .......... .......... .......... .......... 296 GGTGTGATGT TGTTGTTGAC GTGTGGGAAG CAATTAATGT AGAAAGTTAA GGTGGAACTC 123778 .......... .......... .......... .......... .......... .......... 296 ATTGGCCACC CTTAAAAGTT GGCCCCAGCT TTCACTTAGA CACCTTGAGT ATGACTTGTT 123718 .......... .......... .......... .......... .......... .......... 296 CATTTTAAAC ACACTTAGTA GGGCCCCGTT GTGTCATTTG ACACTTTTTG CTGATATGGC 123658 .......... .......... .......... .......... .......... .......... 296 ATAGTGAGTG TGATACACTC ATGAATGACG TGTGCAAGGC TTATATTTAG CAAATTTTTA 123598 .......... .......... .......... .......... .......... .......... 296 TTATATTTAT CTCTTCTCCA TTTTTCAAGA CACACTACCT CCACTGTTTC CCCAAGCTTA 123538 .......... .......... .......... .......... .......... .......... 296 AACTCCTTCA GTGGAGGTCG GATTTTCGAA TCTGTTCTCA GAAAAGAAAA AAGAACAGAT 123478 .......... .......... .......... .......... .......... .......... 296 CTGAAACAAT AAAAAGAAAG AATAGATTTC AAAAACAAAC ACAAACTTAA AGTGGGAATG 123418 .......... .......... .......... .......... .......... .......... 296 AGGAAAAAGA ACTAAAGGGA AAGTAAATGA TGTTTTCACA CTTAGAACTA TCAAAGACTC 123358 .......... .......... .......... .......... .......... .......... 296 CATTTTCTTT AACCCAATTC AATTTTTTGT TATTAGATGA GAACATCAAC TCTTCGATTC 123298 | | ||| | | || || .......... .......... .......... ......AGCA GAATGTTATG AGTTAAGTTT 320 TAATGATTCG TCAATTGTTT ACTGGTGGGC TTCCATATAA GTTAATCTAC AGTATTTTTG 123238 | | || | | | ||| ||| |||||| |||||||||| || |||||| ||||| |||| TCAGAATAAG T---TCTTTT ACTAGTGGGC TTCCATATAA GTGAATCTAA AGTATCTTTG 377 AACCCTTGGA ATGATTCCAA GGTC------ --TTTCAACA ACTCTTTCCA GCTCCCAGTT 123186 |||||||||| |||||||||| |||| |||||||| |||| ||||| ||| || | AACCCTTGGA ATGATTCCAA GGTCTTGAAA AATTTCAACA ACTCGTTCCA ACTCTCAATC 437 ATGCAGTAGC CTTCTAAAAG TAATATCCCA TCCTTGTACT CCTTTTGCTG ATTCCAGACT 123126 ||||||||| |||||||||| |||||| ||| || |||| | |||||||||| | |||||||| TTGCAGTAGC CTTCTAAAAG TAATATTCCA TCAGTGTAAT CCTTTTGCTG AATCCAGACT 497 AATATCTGCT AATTGCTAGA CTACCAGCAG TCTATCCATT GTGATTACTT CCTGGAGAGA 123066 ||| || AATGACT... .......... .......... .......... .......... .......... 504 GGGAAGCAAG TTGGATATGA AGTAATTATC TAGTATACAG CAAGTGACGC AAGTATGTGA 123006 .......... .......... .......... .......... .......... .......... 504 TTTCTTTAAA TAGTGAAAGA ATTAGAGTGA TGAGGCAAGT ATCTAGTAAG GAGTTCTCTT 122946 .......... .......... .......... .......... .......... .......... 504 TGGAACTTCC ATGAAATTCA CAAATGATTA GTTTTTTTAA TTCTTAGCAG CATCAAATGT 122886 .......... .......... .......... .......... .......... .......... 504 TTGTTTAACC CTTTTCTTCC ATGATCCTGT TTGTTATTCT CTACAGTTGT AACTTCAACT 122826 .......... .......... .......... .......... .......... .......... 504 TAGCATTACC TAGATGTCGT TTGAGTTATC CTGCTTATCC TTGGGTTCAC TTTTAGTTGA 122766 .......... .......... .......... .......... .......... .......... 504 GAGACCTTTC TGCCTATGAG TTCTTGGTTG TTGGTTTTGT AGAGCAGAAT GAGTGGTAAT 122706 ||| | | | | .......... .......... .......... .......... ..CGCATAGT G-GCA..... 516 ACCATGGTCC ATATCCATAA CAGAGAGTCA ATGTTAACTA TATGCCCCTG TTTCTTATCT 122646 .......... .......... .......... .......... .......... .......... 516 TTCTTTGTTT TGTTTGTGTT TTTCTTTTGA TCTTAAAATT TGGCGATTCT TCTTTATCAA 122586 .......... .......... .......... .......... .......... .......... 516 AATTGAATAA TATCAATAAA TTTGATGATC CTAATTTTCA TAATGAACAC CATTTAGACT 122526 .......... .......... .......... .......... .......... .......... 516 CTTGCAATGT ACTCAAATCG TTATCTAAGC ATATCTTTTG TGAGTAATAC CTTCTCTTTG 122466 .......... .......... .......... .......... .......... .......... 516 GGGTCTCAAT ATCTACTGTT TAGATAACAA TTTCAGTTCA TTGCAAGAGT CTAAATGGCT 122406 .......... .......... .......... .......... .......... .......... 516 CTGCTAGCTA TGTCGACTTT CAGCGGAACC CATTTGCAGC CTTTAAAGTT GACACCAACT 122346 .......... .......... .......... .......... .......... .......... 516 TTCACTAAGA CACCTCAAGT ATTCATAGTC TAATTATTTT TGAAACTGGA ATAGGCCTAC 122286 .......... .......... .......... .......... .......... .......... 516 GACCATTTTA AACACCCGTA GTAGCGGTCC AGTGTGTCAT TTTGGCAATC ATCAAAAATA 122226 .......... .......... .......... .......... .......... .......... 516 TTGAGGAGAG TGTAATATGA GTTGCTGATA ACATGGCAAG CAACTAATTA AATGATAACA 122166 .......... .......... .......... .......... .......... .......... 516 TGTGACATTT TTAGTAAAAG AAAAAAAGAA GAAACTATTT TAATATCTAT TTAATAAATA 122106 .......... .......... .......... .......... .......... .......... 516 AAACAAAAAT ACTTTTCTAA TAAAAATAGT TTACACAGCT CCTCGCAATA CTCACCATGT 122046 .......... .......... .......... .......... .......... .......... 516 TGTCCCATAC CTCTCAACCC TTTCTATCTC TTACAGAAAT AATCATTTAA CAAAGAAGTA 121986 .......... .......... .......... .......... .......... .......... 516 CAAGTCTTTA ACATAAAAAA TTGACGAATC ATTAGAATCA AAGAGTTGAT GTTCTCATCT 121926 .......... .......... .......... .......... .......... .......... 516 AATAACAAAA AAATGAATTG GGTTAAAGAA AATGGAGTCT TTGATAGTTC TAAGTGTGAA 121866 .......... .......... .......... .......... .......... .......... 516 TTCACCATTT ACTTCCCCTT TAGTTCTTTT CCTCATTCCC ACTTTAAGTT TGTGTTTGTT 121806 .......... .......... .......... .......... .......... .......... 516 TTTGGAATCT GTTCTTTCTT TTTATTGTTT CAGATCTGTT CTTTTTTCTT TTCTGAGAAC 121746 .......... .......... .......... .......... .......... .......... 516 AGATTCGAAA 121736 || | ||| ..ATGCTAAA 524 hqPGS_C04HBa0077O05.1-_SGN-E334018+ (126176 126039,124384 124226,123321 123119) ******************************************************************************** EST sequence 278 +strand 439 n (File: SGN-E247860+) 1 AACAACCTCT CTATATCTAT AAAGTAGGGG TAAGGTGTGC AGTTTAATTG TGGAAACTGG 61 CAACATGTGT ATATATATAT GAACTAGATC TGCACCCTGT CAGTGCTATC TATAACTAAA 121 AAACCCGACC ATCCTTAGGA CTACAGCTTC ACAAGGAACC TATTATATCA ACTAGTGATT 181 CAGTCACCTC TACATATTTT TCTTTACACC ATAAAAGGAA CAAATGAGTA CAATTCATCT 241 TGACTTTCTG CACAGGACTG CTTTTGTCTT CCAAAATTCT GTAGTTCCTC TATTCCCAAA 301 TTGTCCACCA TATACAAGCT GGGACAAGTT TCCGTTACTT CTTTTATCTC ACTGCACCAC 361 CATTATAATT CCAACACTTC AATAAATCAC AACTTGTTGC TGTCATAGAC CATCTTAGTC 421 CTACCAAGTT CAAAATAAG Predicted gene structure (within gDNA segment 128347 to 125358): Exon 1 126482 126112 ( 371 n); cDNA 70 439 ( 370 n); score: 0.900 MATCH C04HBa0077O05.1- SGN-E247860+ 0.900 371 0.845 C PGS_C04HBa0077O05.1-_SGN-E247860+ (126482 126112) Alignment (genomic DNA sequence = upper lines): TATATATATA TGAATTAGAT CTGCACCGTG ACAGTGCTAT CTACAATTAC AAAAACTCAA 126423 |||||||||| |||| ||||| ||||||| || ||||||||| ||| || || |||||| | | TATATATATA TGAACTAGAT CTGCACCCTG TCAGTGCTAT CTATAACTA- AAAAACCCGA 128 CCATGCTTAG GACTACAGCT TCACAAAGAA CCTATCATAT CAACTAGTGA TTCAGTCTCC 126363 |||| ||||| |||||||||| |||||| ||| ||||| |||| |||||||||| ||||||| || CCATCCTTAG GACTACAGCT TCACAAGGAA CCTATTATAT CAACTAGTGA TTCAGTCACC 188 TCTACATAGT TTTCTTTACA CCAAAAAAGG AACAAAAGAA TACAATTCAT CTTGACTTTC 126303 |||||||| | |||||||||| ||| |||||| |||||| || |||||||||| |||||||||| TCTACATATT TTTCTTTACA CCATAAAAGG AACAAATGAG TACAATTCAT CTTGACTTTC 248 TGCACAGGAT TGCTTTTGTC TTAAAAAATT CTGTAGTTCC TCTCTTTCCA AATTGTCCAC 126243 ||||||||| |||||||||| || |||||| |||||||||| ||| || ||| |||||||||| TGCACAGGAC TGCTTTTGTC TTCCAAAATT CTGTAGTTCC TCTATTCCCA AATTGTCCAC 308 CATATACAAG CTGGGACAAG TTCCCACCAC TTCTTTTGTC CCACTGCACC TCCATTTTAG 126183 |||||||||| |||||||||| || || || ||||||| || ||||||||| ||||| || CATATACAAG CTGGGACAAG TTTCCGTTAC TTCTTTTATC TCACTGCACC ACCATTATAA 368 TTCCAACATT TCAATGAATC ACAACTTGTT GCTGGCGTAG ACCATCTTAG TCCTATCAAG 126123 |||||||| | ||||| |||| |||||||||| |||| | ||| |||||||||| ||||| |||| TTCCAACACT TCAATAAATC ACAACTTGTT GCTGTCATAG ACCATCTTAG TCCTACCAAG 428 TACAAAAAAA G 126112 | ||||| || | TTCAAAATAA G 439 hqPGS_C04HBa0077O05.1-_SGN-E247860+ (126482 126112) ******************************************************************************** EST sequence 181 +strand 389 n (File: SGN-E337650+) 1 TGCATTGTGT CTTCATAATC CTGTGAACCG TCATGCCAAA AGCCTTTGGA GAAGAGCACA 61 GGCATATGAC ATGCTTGGTT TAGCTAAGGA GAGCTTATTA GATGCTATTC TGTTTATAAA 121 TGAGTGTTCA CAATCAAATG ATCCTGATCT GTCTTTAAGG CAAAACAAGG TTCCTGATTA 181 TGCTGAGCGT TTGGTAAAAA AGCAGATGCG TGCAGCTTGG TTATTTAGAG AGGCTGCTAT 241 TAAACATGGT GGAGTTCAAT GTGAGGGTGA TGCTGGAGAC ATGTGTGGCC AGGAAACTGA 301 TGATTCAGAA TGGGAGACAG CAAGTGAAAG TGAAATTGGA AATGAGGAGA GAGATGAAAT 361 TGGCGATGAT ATTTGTGGAT GGGAAAATG Predicted gene structure (within gDNA segment 128516 to 126918): Exon 1 127916 127528 ( 389 n); cDNA 1 389 ( 389 n); score: 1.000 MATCH C04HBa0077O05.1- SGN-E337650+ 1.000 389 1.000 C PGS_C04HBa0077O05.1-_SGN-E337650+ (127916 127528) Alignment (genomic DNA sequence = upper lines): TGCATTGTGT CTTCATAATC CTGTGAACCG TCATGCCAAA AGCCTTTGGA GAAGAGCACA 127857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATTGTGT CTTCATAATC CTGTGAACCG TCATGCCAAA AGCCTTTGGA GAAGAGCACA 60 GGCATATGAC ATGCTTGGTT TAGCTAAGGA GAGCTTATTA GATGCTATTC TGTTTATAAA 127797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCATATGAC ATGCTTGGTT TAGCTAAGGA GAGCTTATTA GATGCTATTC TGTTTATAAA 120 TGAGTGTTCA CAATCAAATG ATCCTGATCT GTCTTTAAGG CAAAACAAGG TTCCTGATTA 127737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGTGTTCA CAATCAAATG ATCCTGATCT GTCTTTAAGG CAAAACAAGG TTCCTGATTA 180 TGCTGAGCGT TTGGTAAAAA AGCAGATGCG TGCAGCTTGG TTATTTAGAG AGGCTGCTAT 127677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGCGT TTGGTAAAAA AGCAGATGCG TGCAGCTTGG TTATTTAGAG AGGCTGCTAT 240 TAAACATGGT GGAGTTCAAT GTGAGGGTGA TGCTGGAGAC ATGTGTGGCC AGGAAACTGA 127617 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAACATGGT GGAGTTCAAT GTGAGGGTGA TGCTGGAGAC ATGTGTGGCC AGGAAACTGA 300 TGATTCAGAA TGGGAGACAG CAAGTGAAAG TGAAATTGGA AATGAGGAGA GAGATGAAAT 127557 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTCAGAA TGGGAGACAG CAAGTGAAAG TGAAATTGGA AATGAGGAGA GAGATGAAAT 360 TGGCGATGAT ATTTGTGGAT GGGAAAATG 127528 |||||||||| |||||||||| ||||||||| TGGCGATGAT ATTTGTGGAT GGGAAAATG 389 hqPGS_C04HBa0077O05.1-_SGN-E337650+ (127916 127528) Total number of EST alignments reported: 301 ________________________________________________________________________________ Predicted gene locations (14) in segment 1 to 131136: PGL 1 (+ strand): 4982 5380 AGS-1 (4982 5380) SCR (e 0.883) Exon 1 4982 5380 ( 399 n); score: 0.883 PGS (4982 5294) SGN-E389654+ PGS (5270 5380) SGN-E390054- PGS (5270 5380) SGN-E549969- 3-phase translation of AGS-1 (+strand): . . . . . . 4982 TTAAAGTCCTTCCAATGCTAAACCAGGAACTAGGTGGACCCTAAACCATCTATGATTGAA L K S F Q C - T R N - V D P K P S M I E - S P S N A K P G T R W T L N H L - L N K V L P M L N Q E L G G P - T I Y D - . . . . . . 5042 TCAGTCTCATTGGAGTAGACATTTGTACACCAAAAACAGAACAACAAAATACATTTAAGC S V S L E - T F V H Q K Q N N K I H L S Q S H W S R H L Y T K N R T T K Y I - A I S L I G V D I C T P K T E Q Q N T F K . . . . . . 5102 TTGACTTCCTGCAGGTTGTTGTCCCTATTTTAAAACATCAATCATTTCTCTCTCTCCATA L T S C R L L S L F - N I N H F S L S I - L P A G C C P Y F K T S I I S L S P Y L D F L Q V V V P I L K H Q S F L S L H . . . . . . 5162 TAGTCCACCATATACAAGCAGGTATCATCCTCCATCTTTCTCTGTTTGTAGCCCCAACTC - S T I Y K Q V S S S I F L C L - P Q L S P P Y T S R Y H P P S F S V C S P N S I V H H I Q A G I I L H L S L F V A P T . . . . . . 5222 CAACCTCCTCCCAACTGAAAAGAGTCTCATCAACCTTACTAGGCATAGTCCAGGAAATGC Q P P P N - K E S H Q P Y - A - S R K C N L L P T E K S L I N L T R H S P G N A P T S S Q L K R V S S T L L G I V Q E M . . . . . . 5282 CTCTGAGATTAAGGAAAATCTGGCACAGTTGATCAGTGAAATTGCAGTGTAGAAAGAGGT L - D - G K S G T V D Q - N C S V E R G S E I K E N L A Q L I S E I A V - K E V P L R L R K I W H S - S V K L Q C R K R . . . . 5342 GTTTCACTGTCTCTGTATCCTTACAACAGAAGGAGCATC V S L S L Y P Y N R R S I F H C L C I L T T E G A C F T V S V S L Q Q K E H Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1+_PGL-1_AGS-1_PPS_1 (5041 5313) (frame '0'; 270 bp, 90 residues) 1 ISLIGVDICT PKTEQQNTFK LDFLQVVVPI LKHQSFLSLH IVHHIQAGII LHLSLFVAPT 61 PTSSQLKRVS STLLGIVQEM PLRLRKIWHS - 3-phase translation of AGS-1 (-strand): . . . . . . 5380 GATGCTCCTTCTGTTGTAAGGATACAGAGACAGTGAAACACCTCTTTCTACACTGCAATT D A P S V V R I Q R Q - N T S F Y T A I M L L L L - G Y R D S E T P L S T L Q F C S F C C K D T E T V K H L F L H C N . . . . . . 5320 TCACTGATCAACTGTGCCAGATTTTCCTTAATCTCAGAGGCATTTCCTGGACTATGCCTA S L I N C A R F S L I S E A F P G L C L H - S T V P D F P - S Q R H F L D Y A - F T D Q L C Q I F L N L R G I S W T M P . . . . . . 5260 GTAAGGTTGATGAGACTCTTTTCAGTTGGGAGGAGGTTGGAGTTGGGGCTACAAACAGAG V R L M R L F S V G R R L E L G L Q T E - G - - D S F Q L G G G W S W G Y K Q R S K V D E T L F S W E E V G V G A T N R . . . . . . 5200 AAAGATGGAGGATGATACCTGCTTGTATATGGTGGACTATATGGAGAGAGAGAAATGATT K D G G - Y L L V Y G G L Y G E R E M I K M E D D T C L Y M V D Y M E R E K - L E R W R M I P A C I W W T I W R E R N D . . . . . . 5140 GATGTTTTAAAATAGGGACAACAACCTGCAGGAAGTCAAGCTTAAATGTATTTTGTTGTT D V L K - G Q Q P A G S Q A - M Y F V V M F - N R D N N L Q E V K L K C I L L F - C F K I G T T T C R K S S L N V F C C . . . . . . 5080 CTGTTTTTGGTGTACAAATGTCTACTCCAATGAGACTGATTCAATCATAGATGGTTTAGG L F L V Y K C L L Q - D - F N H R W F R C F W C T N V Y S N E T D S I I D G L G S V F G V Q M S T P M R L I Q S - M V - . . . . 5020 GTCCACCTAGTTCCTGGTTTAGCATTGGAAGGACTTTAA V H L V P G L A L E G L - S T - F L V - H W K D F G P P S S W F S I G R T L Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-1_AGS-1_PPS_1 (5378 5139) (frame '0'; 237 bp, 79 residues) 1 CSFCCKDTET VKHLFLHCNF TDQLCQIFLN LRGISWTMPS KVDETLFSWE EVGVGATNRE 61 RWRMIPACIW WTIWRERND- PGL 2 (+ strand): 19320 20490 AGS-1 (19320 19470,19587 19721,20460 20490) SCR (e 1.000 d 0.467 a 0.829,e 1.000 d 0.888 a 0.998,e 1.000) Exon 1 19320 19470 ( 151 n); score: 1.000 Intron 1 19471 19586 ( 116 n); Pd: 0.467 Pa: 0.829 Exon 2 19587 19721 ( 135 n); score: 1.000 Intron 2 19722 20459 ( 738 n); Pd: 0.888 Pa: 0.998 Exon 3 20460 20490 ( 31 n); score: 1.000 PGS (19320 19470,19587 19721,20460 20490) SGN-E238326+ 3-phase translation of AGS-1 (+strand): . . . . . . 19320 TACACCAATGTTTCTCATGTCTCGGAAGATAAAGTCATTGGGTGTGAAAATGGTTTTATC Y T N V S H V S E D K V I G C E N G F I T P M F L M S R K I K S L G V K M V L S H Q C F S C L G R - S H W V - K W F Y . . . . . . 19380 AGGTGAAGGTTCTGATGAAATTTTTGGTGGTTATTTATATTTCCACAAGGCACCCAACAA R - R F - - N F W W L F I F P Q G T Q Q G E G S D E I F G G Y L Y F H K A P N K Q V K V L M K F L V V I Y I S T R H P T . . . . : . . 19440 AGAGGAGTTTCACCAAGAAACTTGTAGAAAG : ATTAAAGCACTTCATCTTTATGATTGCTT R G V S P R N L - K : D - S T S S L - L L E E F H Q E T C R K : I K A L H L Y D C L K R S F T K K L V E R : L K H F I F M I A . . . . . . 19616 GAGGGCCAATAAATCTACTTCAGCTTGGGGTGTTGAAGCTCGTGTACCTTTCTTGGATAA E G Q - I Y F S L G C - S S C T F L G - R A N K S T S A W G V E A R V P F L D K - G P I N L L Q L G V L K L V Y L S W I . . . . . : . 19676 AGAATTCATCAATATTGCAATGAACATTGATCCGGAATGGAAAATG : ATCCGACCTGACCT R I H Q Y C N E H - S G M E N : D P T - P E F I N I A M N I D P E W K M : I R P D L K N S S I L Q - T L I R N G K - : S D L T . . 20474 CGGAAGAATAGAAAAGT R K N R K G R I E K S E E - K S Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1+_PGL-2_AGS-1_PPS_1 (19321 19470,19587 19721,20460 20489) (frame '2'; 315 bp, 105 residues) 1 TPMFLMSRKI KSLGVKMVLS GEGSDEIFGG YLYFHKAPNK EEFHQETCRK IKALHLYDCL 61 RANKSTSAWG VEARVPFLDK EFINIAMNID PEWKMIRPDL GRIEK PGL 3 (+ strand): 21089 21600 AGS-1 (21089 21136,21305 21600) SCR (e 1.000 d 0.998 a 1.000,e 1.000) Exon 1 21089 21136 ( 48 n); score: 1.000 Intron 1 21137 21304 ( 168 n); Pd: 0.998 Pa: 1.000 Exon 2 21305 21600 ( 296 n); score: 1.000 PGS (21089 21136,21305 21600) SGN-E238902- PGS (21323 21597) SGN-E238813- 3-phase translation of AGS-1 (+strand): . . . . . : . 21089 AAGGAAGGGTACTACTATAGAACTATTTTCGAGCGATATTTCCCCAAG : GCTGCTGCAAGA K E G Y Y Y R T I F E R Y F P K : A A A R R K G T T I E L F S S D I S P R : L L Q E G R V L L - N Y F R A I F P Q : G C C K . . . . . . 21317 GAAACTGTTCCTGGTGGTCCAAGTGTGGCCTGCAGCACTGCAAAAGCAGTAGAATGGGAT E T V P G G P S V A C S T A K A V E W D K L F L V V Q V W P A A L Q K Q - N G M R N C S W W S K C G L Q H C K S S R M G . . . . . . 21377 GCCGCTTGGTCCAAGAATCTAGATCCATCCGGTCGAGCTGCTCTCGGTGTTCATGAAGCT A A W S K N L D P S G R A A L G V H E A P L G P R I - I H P V E L L S V F M K L C R L V Q E S R S I R S S C S R C S - S . . . . . . 21437 GCTTATGAGGTTAAAGAACTATGAAGTTGATAAAGCTGTAGTAGCTGTTTGATTGTATAT A Y E V K E L - S - - S C S S C L I V Y L M R L K N Y E V D K A V V A V - L Y I C L - G - R T M K L I K L - - L F D C I . . . . . . 21497 CTTCATTCAAAAACCTGACTTGTTCCACATTTGACTTCTTTTACGAGTTTGAATTCTTTG L H S K T - L V P H L T S F T S L N S L F I Q K P D L F H I - L L L R V - I L C S S F K N L T C S T F D F F Y E F E F F . . . . . 21557 CTTCTGGTTTTACAATTACCAAAGTTTATTCTACTTGAGAAGAA L L V L Q L P K F I L L E K F W F Y N Y Q S L F Y L R R A S G F T I T K V Y S T - E E Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1+_PGL-3_AGS-1_PPS_1 (21089 21136,21305 21460) (frame '1'; 201 bp, 67 residues) 1 KEGYYYRTIF ERYFPKAAAR ETVPGGPSVA CSTAKAVEWD AAWSKNLDPS GRAALGVHEA 61 AYEVKEL- PGL 4 (- strand): 36555 22795 AGS-1 (25304 24973,24933 24891,23699 23670,23578 23573,22829 22795) SCR (e 0.893 d 0.000 a 0.000,e 0.605 d 0.000 a 0.000,e 0.683 d 0.900 a 0.000,e 0.833 d 0.779 a 0.639,e 0.714) Exon 1 25304 24973 ( 332 n); score: 0.893 Intron 1 24972 24934 ( 39 n); Pd: 0.000 Pa: 0.000 Exon 2 24933 24891 ( 43 n); score: 0.605 Intron 2 24890 23700 (1191 n); Pd: 0.000 Pa: 0.000 Exon 3 23699 23670 ( 30 n); score: 0.683 Intron 3 23669 23579 ( 91 n); Pd: 0.900 Pa: 0.000 Exon 4 23578 23573 ( 6 n); score: 0.833 Intron 4 23572 22830 ( 743 n); Pd: 0.779 Pa: 0.639 Exon 5 22829 22795 ( 35 n); score: 0.714 PGS (25228 24973,24933 24891,23699 23670,23578 23573,22829 22795) SGN-E204223- PGS (25203 24973,24933 24891,23699 23670,23578 23573,22829 22795) SGN-E374844- PGS (25304 24970) SGN-E253695+ PGS (25304 25028) SGN-E249253+ PGS (25304 25052) SGN-E242674- PGS (25304 25052) SGN-E233074- PGS (25304 25052) SGN-E233594- PGS (25304 25052) SGN-E233735- PGS (25304 25052) SGN-E377238- PGS (25304 25052) SGN-E240879- PGS (25304 25053) SGN-E237992- PGS (25304 25103) SGN-E544203- PGS (25304 25179) SGN-E376754- PGS (25304 25204) SGN-E577960+ PGS (25288 25207) SGN-E217478- PGS (25288 25207) SGN-E228654- PGS (25288 25207) SGN-E229134- PGS (25304 25218) SGN-E240526+ 3-phase translation of AGS-1 (-strand): . . . . . . 25304 AGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTGACTTAAAAGCTGGTTTTTGACTTA S L F G S A - K L V K L T - K L V F D L A C L A Q L K S W S N - L K S W F L T Y P V W L S L K A G Q T D L K A G F - L . . . . . . 25244 TTTAGTTGTTTGGCAATACTCAAAATAACTTACTTTAAGTTAAAAAAAACTTATTTTAAG F S C L A I L K I T Y F K L K K T Y F K L V V W Q Y S K - L T L S - K K L I L S I - L F G N T Q N N L L - V K K N L F - . . . . . . 25184 CCAAAAGTTAAAAACTGGGGTAGGGGTGTTTTTTTTTTTTAGCTTATAAGCTGTTTTAAG P K V K N W G R G V F F F - L I S C F K Q K L K T G V G V F F F F S L - A V L S A K S - K L G - G C F F F L A Y K L F - . . . . . . 25124 TTGACCACATTTTTATCTTTTTGCCATTAATATTTTTATGCAATCTCCAAATTACTCATA L T T F L S F C H - Y F Y A I S K L L I - P H F Y L F A I N I F M Q S P N Y S Y V D H I F I F L P L I F L C N L Q I T H . . . . . . 25064 TAACTCTAACATCTCTTTCTTCCATTTTTCCCTTTTCACGTTTGATATAACAACTTCAGC - L - H L F L P F F P F H V - Y N N F S N S N I S F F H F S L F T F D I T T S A I T L T S L S S I F P F S R L I - Q L Q . . . . : . . 25004 ACTTTTATCCAAACGCATAACTGCTTATTTTA : CTGCTTTTATTAAGCCCATCCAAACGGA T F I Q T H N C L F Y : C F Y - A H P N G L L S K R I T A Y F : T A F I K P I Q T D H F Y P N A - L L I L : L L L L S P S K R . . : . . . : . : 24905 TCCTAAGTCCGTATT : CTACTTGAATTTATCATAAAACTAATTGAT : AATTAT : GGCTAATTG S - V R I : L L E F I I K L I D : N Y : G - L P K S V F : Y L N L S - N - L I : I M : A N - I L S P Y : S T - I Y H K T N - : - L : W L I . . . 22820 AAAAAGTTTTTTAAAAAAACTATAAT K K F F K K T I K S F L K K L - E K V F - K N Y N Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-4_AGS-1_PPS_1 (25120 24973,24933 24891,23699 23681) (frame '2'; 207 bp, 69 residues) 1 PHFYLFAINI FMQSPNYSYN SNISFFHFSL FTFDITTSAL LSKRITAYFT AFIKPIQTDP 61 KSVFYLNLS- AGS-2 (29200 28099,28016 27948,27880 27003,23522 23495) SCR (e 0.874 d 0.000 a 0.000,e 0.616 d 0.000 a 0.000,e 0.879 d 0.949 a 0.000,e 0.750) Exon 1 29200 28099 (1102 n); score: 0.874 Intron 1 28098 28017 ( 82 n); Pd: 0.000 Pa: 0.000 Exon 2 28016 27948 ( 69 n); score: 0.616 Intron 2 27947 27881 ( 67 n); Pd: 0.000 Pa: 0.000 Exon 3 27880 27003 ( 878 n); score: 0.879 Intron 3 27002 23523 (3480 n); Pd: 0.949 Pa: 0.000 Exon 4 23522 23495 ( 28 n); score: 0.750 PGS (27569 27003,23522 23495) SGN-E550335+ PGS (27569 27003,23522 23495) SGN-E550484+ PGS (27569 27003,23522 23495) SGN-E396039+ PGS (27558 27003,23522 23495) SGN-E550322+ PGS (27569 27005) SGN-E374999+ PGS (27321 27007) SGN-E252199- PGS (27569 27014) SGN-E231589+ PGS (27569 27023) SGN-E396054+ PGS (27569 27023) SGN-E396058+ PGS (27569 27024) SGN-E241959+ PGS (27577 27060) SGN-E349296- PGS (27569 27096) SGN-E236652+ PGS (27569 27115) SGN-E396070+ PGS (27523 27133) SGN-E356257- PGS (27458 27228) SGN-E396037+ PGS (28210 28099,28016 27948,27880 27525) SGN-E347579- PGS (27879 27615) SGN-E349726- PGS (27867 27615) SGN-E357559- PGS (28585 28182) SGN-E246710- PGS (28486 28252) SGN-E209683- PGS (29143 28412) SGN-E351546- PGS (29069 28412) SGN-E356696- PGS (28994 28412) SGN-E356206- PGS (28772 28483) SGN-E222578+ PGS (29165 28492) SGN-E392027+ PGS (28899 28493) SGN-E542084+ PGS (28899 28493) SGN-E370357+ PGS (28749 28493) SGN-E336814- PGS (28758 28496) SGN-E373117- PGS (28749 28496) SGN-E373116+ PGS (28723 28525) SGN-E216150+ PGS (28758 28540) SGN-E298638- PGS (28739 28566) SGN-E368629- PGS (28732 28566) SGN-E238551- PGS (28758 28567) SGN-E352844- PGS (29200 28917) SGN-E355114- 3-phase translation of AGS-2 (-strand): . . . . . . 29200 ACAGTCTCAGTGGCTGGCTCAGATGCATCTTGTCTTGCTGATGTTGATGTTGGCGCGGTC T V S V A G S D A S C L A D V D V G A V Q S Q W L A Q M H L V L L M L M L A R S S L S G W L R C I L S C - C - C W R G . . . . . . 29140 GTTGCTCTAGTTCTAACCATCTGCGAAATAGAGTGAAGATGGTCAGATACCAATTTGTAT V A L V L T I C E I E - R W S D T N L Y L L - F - P S A K - S E D G Q I P I C I R C S S S N H L R N R V K M V R Y Q F V . . . . . . 29080 CACCTAGATACCAATTGGATCCAAGTAATAACACAAAAGAAAGAAAGAAAGAATGGAATT H L D T N W I Q V I T Q K K E R K N G I T - I P I G S K - - H K R K K E R M E F S P R Y Q L D P S N N T K E R K K E W N . . . . . . 29020 TTCCTAAAGTCTTATAGCCTCTCAAAGAAAAGTAAAGGCGTCCCCCTACCGTTCCTTAAG F L K S Y S L S K K S K G V P L P F L K S - S L I A S Q R K V K A S P Y R S L R F P K V L - P L K E K - R R P P T V P - . . . . . . 28960 ACTCTACTAGACTCGTTCTTGTGTGATGAGACCAACGAACCTAATGCTCTGATACCAAGT T L L D S F L C D E T N E P N A L I P S L Y - T R S C V M R P T N L M L - Y Q V D S T R L V L V - - D Q R T - C S D T K . . . . . . 28900 TTGTCACGACCCAAATCGGGTCGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAA L S R P K S G R D W H P H L P S Y V S E C H D P N R V A T G T H T Y P P M - A N F V T T Q I G S R L A P T L T L L C E R . . . . . . 28840 CCAACCAATCTAAACCTTAACATTTCAATATAATATCAACAGAAAGTAATGCGGAAGACT P T N L N L N I S I - Y Q Q K V M R K T Q P I - T L T F Q Y N I N R K - C G R L T N Q S K P - H F N I I S T E S N A E D . . . . . . 28780 TAAACTCATTAATAAAAACCAATTCAATAACTTCTAAAAACTCAACAACTATTATTATCC - T H - - K P I Q - L L K T Q Q L L L S K L I N K N Q F N N F - K L N N Y Y Y P L N S L I K T N S I T S K N S T T I I I . . . . . . 28720 CCAAAATCTGGAAGTCATTATCACAAGAACATCTACTTCAAATTACTAAATCTAAGAGTA P K S G S H Y H K N I Y F K L L N L R V Q N L E V I I T R T S T S N Y - I - E Y P K I W K S L S Q E H L L Q I T K S K S . . . . . . 28660 TCTAAGAAGTTAAAATACATAAACAGCTAGTCCATGCCGGAACTTCAAGGCATCAAGACA S K K L K Y I N S - S M P E L Q G I K T L R S - N T - T A S P C R N F K A S R H I - E V K I H K Q L V H A G T S R H Q D . . . . . . 28600 TAAAGAAGAAGATCCAGTCCAAGCTAGAAGCTTTAGCTCACCCTGAAATCTAGTGTGATG - R R R S S P S - K L - L T L K S S V M K E E D P V Q A R S F S S P - N L V - - I K K K I Q S K L E A L A H P E I - C D . . . . . . 28540 AAGACTGGCTAGAGTTGCGGTTGGATTGAAGACGACGATACGTTTGCTGCACTCCACAAT K T G - S C G W I E D D D T F A A L H N R L A R V A V G L K T T I R L L H S T M E D W L E L R L D - R R R Y V C C T P Q . . . . . . 28480 GAACAAAAAGAAAACATACAAGTAGGGGTCAGTAGAAAACACGAGTACTGAGTAGATATC E Q K E N I Q V G V S R K H E Y - V D I N K K K T Y K - G S V E N T S T E - I S - T K R K H T S R G Q - K T R V L S R Y . . . . . . 28420 ATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATATCATAAAATCAACTACAG I G Q L K I E N S I Y Q I I S - N Q L Q S A N S K - K T V Y I R - Y H K I N Y S H R P T Q N R K Q Y I S D N I I K S T T . . . . . . 28360 TACTTAACATGCAACATTTACAATTACCATAACCCTTGGTCATAACACCAAACTCATCAA Y L T C N I Y N Y H N P W S - H Q T H Q T - H A T F T I T I T L G H N T K L I N V L N M Q H L Q L P - P L V I T P N S S . . . . . . 28300 TGAGGACTCACACCTCCCCATCATACTCATTTGGGAATTAGGTTCATTAAATTAAGTATA - G L T P P H H T H L G I R F I K L S I E D S H L P I I L I W E L G S L N - V Y M R T H T S P S Y S F G N - V H - I K Y . . . . . . 28240 TTAACATATTTCAAGATTCATTCTCTTTACTAATCCTGGTGCCGGAACGTGACACTCCGA L T Y F K I H S L Y - S W C R N V T L R - H I S R F I L F T N P G A G T - H S D I N I F Q D S F S L L I L V P E R D T P . . . . . . 28180 TCCTCATATACTATCCTGGTACCAGAATGTGGCACCCGATCCATATACTATCCTGGTGTC S S Y T I L V P E C G T R S I Y Y P G V P H I L S W Y Q N V A P D P Y T I L V S I L I Y Y P G T R M W H P I H I L S W C . . . : . . . 28120 GGAACGTGACACTCCGATCCTC : TCCTGGTGTCGGAACTTGACACTCCGATCCTCACATAC G T - H S D P : L L V S E L D T P I L T Y E R D T P I L : S W C R N L T L R S S H T R N V T L R S S : P G V G T - H S D P H I . . . . : . . 27978 TATCCTGGTACCGGAACGTGGCACCCGATCC : CACCCGATCCCCTAATCTCACTACTTTCG Y P G T G T W H P I : P P D P L I S L L S I L V P E R G T R S : H P I P - S H Y F R L S W Y R N V A P D P : T R S P N L T T F . . . . . . 27851 TTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAGGGCTTTTC F I K P S F I P R H H H - Q S R L G L F S S S L L L Y Q G I I I N K V D - G F S V H Q A F F Y T K A S S L T K - I R A F . . . . . . 27791 AAGATTTAAGATTCAAGAGCTTCATCATGCTTATTCATCACAATTATATAATCACATCAT K I - D S R A S S C L F I T I I - S H H R F K I Q E L H H A Y S S Q L Y N H I M Q D L R F K S F I M L I H H N Y I I T S . . . . . . 27731 GTAAGGATACAATTAATCACATAGAAGGGTTTACAACACTACCCAATACATATCATTCGC V R I Q L I T - K G L Q H Y P I H I I R - G Y N - S H R R V Y N T T Q Y I S F A C K D T I N H I E G F T T L P N T Y H S . . . . . . 27671 TATTAAGAGTTTACTACGAATAGTATAAAAACCATAACCTACCTCCACCGAAGATTAGTG Y - E F T T N S I K T I T Y L H R R L V I K S L L R I V - K P - P T S T E D - - L L R V Y Y E - Y K N H N L P P P K I S . . . . . . 27611 ATCAAGCAAGCAAATTCCCCAAAGCTTTGTATTTTCCTCTTCTCGTTCGATCCTCTCTCT I K Q A N S P K L C I F L F S F D P L S S S K Q I P Q S F V F S S S R S I L S L D Q A S K F P K A L Y F P L L V R S S L . . . . . . 27551 CTCTTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATAT L F V L S I F F I Q T L F L L P - L A Y S L F F L F S L F K P S F F Y P N - H I S L C S F Y F L Y S N P L S F T L I S I . . . . . . 27491 AATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAA N - E - K M A I I T H - F T Q G Y L F - I K N K R W Q - - P T N L L K V T S F N - L R I K D G N N N P L I Y S R L P L L . . . . . . 27431 CCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTTATAATTAAAACAGGAATA P P S N - T Y - H - P T N F I I K T G I P Q V I R L I N I N P L T L - L K Q E - T P K - L D L L T L T H - L Y N - N R N . . . . . . 27371 GTCAAAAACTTCCTTTAAAACATTAAAGAAATCCGACTCAGCCTGGGATTACGCAGCCTG V K N F L - N I K E I R L S L G L R S L S K T S F K T L K K S D S A W D Y A A C S Q K L P L K H - R N P T Q P G I T Q P . . . . . . 27311 TGACGGCCTGTCATGCCTGCGACGGTCCGTCCTGCTGCTCCGTCACAGAGTTCAGAGACT - R P V M P A T V R P A A P S Q S S E T D G L S C L R R S V L L L R H R V Q R L V T A C H A C D G P S C C S V T E F R D . . . . . . 27251 CAATTCCCTTAAAGAGTCTGTGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGCCATTC Q F P - R V C D G P S R L - R S V L P F N S L K E S V T V R H A C D G P S C H S S I P L K S L - R S V T P V T V R P A I . . . . . . 27191 CGTTACGAAGTTTAGAGAGTCGATTTCAGTACCCATTTTTCAGAATTTCAAAGTGTTTTG R Y E V - R V D F S T H F S E F Q S V L V T K F R E S I S V P I F Q N F K V F - P L R S L E S R F Q Y P F F R I S K C F . . . . . . 27131 AAACGAGACCCCCTCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGAATCCGTCGTC K R D P L D G P S C P - R S V V E S V V N E T P S T V R R A H D G P S W N P S S E T R P P R R S V V P M T V R R G I R R . . . . . . 27071 TCAGCCAGTTTTCCAGAAATAACATCTCTTGCTCAAAACGACTAAACAGGTCGTTACAAT S A S F P E I T S L A Q N D - T G R Y N Q P V F Q K - H L L L K T T K Q V V T I L S Q F S R N N I S C S K R L N R S L Q . : . . . 27011 AAATATTAG : TTTTAATTAAAAAATATTATTAGTTTAG K Y - : F - L K N I I S L N I S : F N - K I L L V - - I L : V L I K K Y Y - F Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-4_AGS-2_PPS_1 (29104 28808) (frame '1'; 294 bp, 98 residues) 1 RWSDTNLYHL DTNWIQVITQ KKERKNGIFL KSYSLSKKSK GVPLPFLKTL LDSFLCDETN 61 EPNALIPSLS RPKSGRDWHP HLPSYVSEPT NLNLNISI- >C04HBa0077O05.1-_PGL-4_AGS-2_PPS_2 (27370 27131) (frame '2'; 237 bp, 79 residues) 1 SKTSFKTLKK SDSAWDYAAC DGLSCLRRSV LLLRHRVQRL NSLKESVTVR HACDGPSCHS 61 VTKFRESISV PIFQNFKVF- AGS-3 (27569 27014,23656 23625) SCR (e 0.879 d 0.000 a 0.000,e 0.781) Exon 1 27569 27014 ( 556 n); score: 0.879 Intron 1 27013 23657 (3357 n); Pd: 0.000 Pa: 0.000 Exon 2 23656 23625 ( 32 n); score: 0.781 PGS (27569 27014,23656 23625) SGN-E550065+ PGS (27569 27014,23656 23625) SGN-E550207+ PGS (27569 27014,23656 23625) SGN-E390013+ PGS (27569 27014,23656 23625) SGN-E550211+ PGS (27569 27014,23656 23625) SGN-E550464+ PGS (27569 27014,23656 23625) SGN-E549941+ PGS (27569 27014,23656 23625) SGN-E550025+ PGS (27569 27014,23656 23625) SGN-E377133+ PGS (27569 27014,23656 23625) SGN-E550127- PGS (27533 27014,23656 23625) SGN-E396057- PGS (27517 27014,23656 23625) SGN-E377132- PGS (27501 27014,23656 23625) SGN-E396055- PGS (27499 27014,23656 23625) SGN-E398551- PGS (27489 27014,23656 23625) SGN-E396038- PGS (27383 27014,23656 23625) SGN-E396069- PGS (27377 27014,23656 23625) SGN-E374998- 3-phase translation of AGS-3 (-strand): . . . . . . 27569 TCGTTCGATCCTCTCTCTCTCTTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTT S F D P L S L F V L S I F F I Q T L F L R S I L S L S L F F L F S L F K P S F F V R S S L S L C S F Y F L Y S N P L S . . . . . . 27509 TTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACT L P - L A Y N - E - K M A I I T H - F T Y P N - H I I K N K R W Q - - P T N L L F T L I S I - L R I K D G N N N P L I Y . . . . . . 27449 CAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTT Q G Y L F - P P S N - T Y - H - P T N F K V T S F N P Q V I R L I N I N P L T L S R L P L L T P K - L D L L T L T H - L . . . . . . 27389 ATAATTAAAACAGGAATAGTCAAAAACTTCCTTTAAAACATTAAAGAAATCCGACTCAGC I I K T G I V K N F L - N I K E I R L S - L K Q E - S K T S F K T L K K S D S A Y N - N R N S Q K L P L K H - R N P T Q . . . . . . 27329 CTGGGATTACGCAGCCTGTGACGGCCTGTCATGCCTGCGACGGTCCGTCCTGCTGCTCCG L G L R S L - R P V M P A T V R P A A P W D Y A A C D G L S C L R R S V L L L R P G I T Q P V T A C H A C D G P S C C S . . . . . . 27269 TCACAGAGTTCAGAGACTCAATTCCCTTAAAGAGTCTGTGACGGTCCGTCACGCCTGTGA S Q S S E T Q F P - R V C D G P S R L - H R V Q R L N S L K E S V T V R H A C D V T E F R D S I P L K S L - R S V T P V . . . . . . 27209 CGGTCCGTCCTGCCATTCCGTTACGAAGTTTAGAGAGTCGATTTCAGTACCCATTTTTCA R S V L P F R Y E V - R V D F S T H F S G P S C H S V T K F R E S I S V P I F Q T V R P A I P L R S L E S R F Q Y P F F . . . . . . 27149 GAATTTCAAAGTGTTTTGAAACGAGACCCCCTCGACGGTCCGTCGTGCCCATGACGGTCC E F Q S V L K R D P L D G P S C P - R S N F K V F - N E T P S T V R R A H D G P R I S K C F E T R P P R R S V V P M T V . . . . . . 27089 GTCGTGGAATCCGTCGTCTCAGCCAGTTTTCCAGAAATAACATCTCTTGCTCAAAACGAC V V E S V V S A S F P E I T S L A Q N D S W N P S S Q P V F Q K - H L L L K T T R R G I R R L S Q F S R N N I S C S K R . . : . . . 27029 TAAACAGGTCGTTACA : TTTAAGTTGTCCCTTCCTAATTATTATTCTTA - T G R Y : I - V V P S - L L F L K Q V V T : F K L S L P N Y Y S L N R S L H : L S C P F L I I I L Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-4_AGS-3_PPS_1 (27228 27014,23656 23626) (frame '0'; 246 bp, 82 residues) 1 RSVTPVTVRP AIPLRSLESR FQYPFFRISK CFETRPPRRS VVPMTVRRGI RRLSQFSRNN 61 ISCSKRLNRS LHLSCPFLII IL >C04HBa0077O05.1-_PGL-4_AGS-3_PPS_2 (27370 27131) (frame '2'; 237 bp, 79 residues) 1 SKTSFKTLKK SDSAWDYAAC DGLSCLRRSV LLLRHRVQRL NSLKESVTVR HACDGPSCHS 61 VTKFRESISV PIFQNFKVF- AGS-4 (24430 23986) SCR (e 0.921) Exon 1 24430 23986 ( 445 n); score: 0.921 PGS (24430 23986) SGN-E379112- PGS (24430 23986) SGN-E379618+ PGS (24430 23986) SGN-E394609+ PGS (24327 23986) SGN-E394141- PGS (24280 23986) SGN-E392605- PGS (24423 23991) SGN-E393065+ PGS (24430 24011) SGN-E200845+ PGS (24430 24137) SGN-E393076+ PGS (24430 24157) SGN-E393075+ 3-phase translation of AGS-4 (-strand): . . . . . . 24430 TGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATA C I A R R Y M F F S R F I Q K Q K H N I V - Q E D I C F S L A L Y K N R N T I Y Y S K K I Y V F L S L Y T K T E T Q Y . . . . . . 24370 CACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTTACTGCAATTGTATAATTCACA H T S V V - S - R K L Y F T A I V - F T T L L L Y K A R E N C I L L Q L Y N S Q T H F C C I K L E K I V F Y C N C I I H . . . . . . 24310 ATTGTATAATTCTTTGACCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGT I V - F F D L F L C N I - S K M F V N C L Y N S L T F F S A I F E V K C L - I V N C I I L - P F S L Q Y L K - N V C K L . . . . . . 24250 ATAATTAAGTGTATAACACGAAGATATAGATTTTTGCATGTGTATATACAATTTTCTCTC I I K C I T R R Y R F L H V Y I Q F S L - L S V - H E D I D F C M C I Y N F L S Y N - V Y N T K I - I F A C V Y T I F S . . . . . . 24190 GCTTTATACAAAACAGAAACATAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGC A L Y K T E T - L Y T S V Y K A R E A S L Y T K Q K H N Y T L L C I K R E R R A R F I Q N R N I I I H F C V - S E R G E . . . . . . 24130 GAGAATGGAGAGTGGCGAGCGAGATTTCTGGGAGAGAGGCGCTGGCAAATTTTAGCTAAC E N G E W R A R F L G E R R W Q I L A N R M E S G E R D F W E R G A G K F - L T R E W R V A S E I S G R E A L A N F S - . . . . . . 24070 GTTTGCTATGGAGCACAATTAAATCAAACCCTAACTATTCCATTTATTTTAGGTTGTTAG V C Y G A Q L N Q T L T I P F I L G C - F A M E H N - I K P - L F H L F - V V S R L L W S T I K S N P N Y S I Y F R L L . . . 24010 TTTGCTATTATATACAATTTTCCCA F A I I Y N F P L L L Y T I F P V C Y Y I Q F S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-4 (+strand): . . . . . . 23986 TGGGAAAATTGTATATAATAGCAAACTAACAACCTAAAATAAATGGAATAGTTAGGGTTT W E N C I - - Q T N N L K - M E - L G F G K I V Y N S K L T T - N K W N S - G L G K L Y I I A N - Q P K I N G I V R V . . . . . . 24046 GATTTAATTGTGCTCCATAGCAAACGTTAGCTAAAATTTGCCAGCGCCTCTCTCCCAGAA D L I V L H S K R - L K F A S A S L P E I - L C S I A N V S - N L P A P L S Q K - F N C A P - Q T L A K I C Q R L S P R . . . . . . 24106 ATCTCGCTCGCCACTCTCCATTCTCGCTCGCCTCTCTCGCTTTATACACAGAAGTGTATA I S L A T L H S R S P L S L Y T Q K C I S R S P L S I L A R L S R F I H R S V - N L A R H S P F S L A S L A L Y T E V Y . . . . . . 24166 ATTATGTTTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATACACATGCAAAAATCTAT I M F L F C I K R E K I V Y T H A K I Y L C F C F V - S E R K L Y I H M Q K S I N Y V S V L Y K A R E N C I Y T C K N L . . . . . . 24226 ATCTTCGTGTTATACACTTAATTATACAATTTACAAACATTTTACTTCAAATATTGCAGA I F V L Y T - L Y N L Q T F Y F K Y C R S S C Y T L N Y T I Y K H F T S N I A E Y L R V I H L I I Q F T N I L L Q I L Q . . . . . . 24286 GAAAAAGGTCAAAGAATTATACAATTGTGAATTATACAATTGCAGTAAAATACAATTTTC E K G Q R I I Q L - I I Q L Q - N T I F K K V K E L Y N C E L Y N C S K I Q F S R K R S K N Y T I V N Y T I A V K Y N F . . . . . . 24346 TCTAGCTTTATACAACAGAAGTGTGTATATTGTGTTTCTGTTTTTGTATAAAGCGAGAGA S S F I Q Q K C V Y C V S V F V - S E R L A L Y N R S V Y I V F L F L Y K A R E L - L Y T T E V C I L C F C F C I K R E . . . 24406 AAAACATATATCTTCTTGCTATACA K T Y I F L L Y K H I S S C Y T K N I Y L L A I Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1+_PGL-4_AGS-4_PPS_1 (24066 24350) (frame '0'; 282 bp, 94 residues) 1 QTLAKICQRL SPRNLARHSP FSLASLALYT EVYNYVSVLY KARENCIYTC KNLYLRVIHL 61 IIQFTNILLQ ILQRKRSKNY TIVNYTIAVK YNFL- AGS-5 (24673 24565,24511 24449,24174 24167) SCR (e 0.899 d 0.000 a 0.000,e 0.921 d 0.000 a 0.961,e 0.750) Exon 1 24673 24565 ( 109 n); score: 0.899 Intron 1 24564 24512 ( 53 n); Pd: 0.000 Pa: 0.000 Exon 2 24511 24449 ( 63 n); score: 0.921 Intron 2 24448 24175 ( 274 n); Pd: 0.000 Pa: 0.961 Exon 3 24174 24167 ( 8 n); score: 0.750 PGS (24673 24565,24511 24449,24174 24167) SGN-E371327- 3-phase translation of AGS-5 (-strand): . . . . . . 24673 TTTCACATATAGGAAATAAAATATTTATATTTGTATGCTATAGCAAATTTTGTATAATTG F H I - E I K Y L Y L Y A I A N F V - L F T Y R K - N I Y I C M L - Q I L Y N C S H I G N K I F I F V C Y S K F C I I . . . . . : . 24613 CGCTCCATAGCAAACATAAAACTGTATAATTCGCTATACATATACAAGT : GTATAATTCGT R S I A N I K L Y N S L Y I Y K : C I I R A P - Q T - N C I I R Y T Y T S : V - F V A L H S K H K T V - F A I H I Q V : Y N S . . . . . . : 24500 TATCCTATTTCACTGCAATTGTATAATGCACGATTATATAATTAACTGCCTA : AAACATAA Y P I S L Q L Y N A R L Y N - L P : K T - I L F H C N C I M H D Y I I N C L : K H L S Y F T A I V - C T I I - L T A - : N I Maximal non-overlapping open reading frames (>= 64 codons): none AGS-6 (24695 24582,24551 24474,24300 24264) SCR (e 0.895 d 0.000 a 0.000,e 0.821 d 0.647 a 0.000,e 0.757) Exon 1 24695 24582 ( 114 n); score: 0.895 Intron 1 24581 24552 ( 30 n); Pd: 0.000 Pa: 0.000 Exon 2 24551 24474 ( 78 n); score: 0.821 Intron 2 24473 24301 ( 173 n); Pd: 0.647 Pa: 0.000 Exon 3 24300 24264 ( 37 n); score: 0.757 PGS (24695 24582,24551 24474,24300 24264) SGN-E578389- 3-phase translation of AGS-6 (-strand): . . . . . . 24695 CTCTTTAATTTGAAAGGGCAACTTTCACATATAGGAAATAAAATATTTATATTTGTATGC L F N L K G Q L S H I G N K I F I F V C S L I - K G N F H I - E I K Y L Y L Y A L - F E R A T F T Y R K - N I Y I C M . . . . . . : 24635 TATAGCAAATTTTGTATAATTGCGCTCCATAGCAAACATAAAACTGTATAATTC : GCCTAA Y S K F C I I A L H S K H K T V - F : A - I A N F V - L R S I A N I K L Y N S : P K L - Q I L Y N C A P - Q T - N C I I : R L . . . . . . 24545 ATTGTATAATTCGCTGGCCTATTTCGCTGCAATAGTATAATTCGTTATCCTATTTCACTG I V - F A G L F R C N S I I R Y P I S L L Y N S L A Y F A A I V - F V I L F H C N C I I R W P I S L Q - Y N S L S Y F T . . : . . . 24485 CAATTGTATAAT : TCTTTGACCTTTTTCTCTGCAATATTTGAAGTAAAAT Q L Y N : S L T F F S A I F E V K N C I I : L - P F S L Q Y L K - N A I V - : F F D L F L C N I - S K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-7 (24679 24434) SCR (e 0.894) Exon 1 24679 24434 ( 246 n); score: 0.894 PGS (24679 24434) SGN-E379427- 3-phase translation of AGS-7 (-strand): . . . . . . 24679 GGCAACTTTCACATATAGGAAATAAAATATTTATATTTGTATGCTATAGCAAATTTTGTA G N F H I - E I K Y L Y L Y A I A N F V A T F T Y R K - N I Y I C M L - Q I L Y Q L S H I G N K I F I F V C Y S K F C . . . . . . 24619 TAATTGCGCTCCATAGCAAACATAAAACTGTATAATTCGCTATACATATACAAGTGTATA - L R S I A N I K L Y N S L Y I Y K C I N C A P - Q T - N C I I R Y T Y T S V - I I A L H S K H K T V - F A I H I Q V Y . . . . . . 24559 GTTCGCTGGCCTAAATTGTATAATTCGCTGGCCTATTTCGCTGCAATAGTATAATTCGTT V R W P K L Y N S L A Y F A A I V - F V F A G L N C I I R W P I S L Q - Y N S L S S L A - I V - F A G L F R C N S I I R . . . . . . 24499 ATCCTATTTCACTGCAATTGTATAATGCACGATTATATAATTAACTGCCTATTTCGCTGC I L F H C N C I M H D Y I I N C L F R C S Y F T A I V - C T I I - L T A Y F A A Y P I S L Q L Y N A R L Y N - L P I S L . 24439 AATATT N I I Q Y Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-7 (+strand): . . . . . . 24434 AATATTGCAGCGAAATAGGCAGTTAATTATATAATCGTGCATTATACAATTGCAGTGAAA N I A A K - A V N Y I I V H Y T I A V K I L Q R N R Q L I I - S C I I Q L Q - N Y C S E I G S - L Y N R A L Y N C S E . . . . . . 24494 TAGGATAACGAATTATACTATTGCAGCGAAATAGGCCAGCGAATTATACAATTTAGGCCA - D N E L Y Y C S E I G Q R I I Q F R P R I T N Y T I A A K - A S E L Y N L G Q I G - R I I L L Q R N R P A N Y T I - A . . . . . . 24554 GCGAACTATACACTTGTATATGTATAGCGAATTATACAGTTTTATGTTTGCTATGGAGCG A N Y T L V Y V - R I I Q F Y V C Y G A R T I H L Y M Y S E L Y S F M F A M E R S E L Y T C I C I A N Y T V L C L L W S . . . . . . 24614 CAATTATACAAAATTTGCTATAGCATACAAATATAAATATTTTATTTCCTATATGTGAAA Q L Y K I C Y S I Q I - I F Y F L Y V K N Y T K F A I A Y K Y K Y F I S Y M - K A I I Q N L L - H T N I N I L F P I C E . 24674 GTTGCC V A L S C Maximal non-overlapping open reading frames (>= 64 codons): none AGS-8 (25154 24900) SCR (e 0.914) Exon 1 25154 24900 ( 255 n); score: 0.914 PGS (25154 24900) SGN-E578392- 3-phase translation of AGS-8 (-strand): . . . . . . 25154 TTTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGCCATTAA F F F - L I S C F K L T T F L S F C H - F F F S L - A V L S - P H F Y L F A I N F F L A Y K L F - V D H I F I F L P L . . . . . . 25094 TATTTTTATGCAATCTCCAAATTACTCATATAACTCTAACATCTCTTTCTTCCATTTTTC Y F Y A I S K L L I - L - H L F L P F F I F M Q S P N Y S Y N S N I S F F H F S I F L C N L Q I T H I T L T S L S S I F . . . . . . 25034 CCTTTTCACGTTTGATATAACAACTTCAGCACTTTTATCCAAACGCATAACTGCTTATTT P F H V - Y N N F S T F I Q T H N C L F L F T F D I T T S A L L S K R I T A Y F P F S R L I - Q L Q H F Y P N A - L L I . . . . . . 24974 TAAAAATAAATTTCAACACTTCTAAAAGTAATTTTTTAAAGCTGCTTTTATTAAGCCCAT - K - I S T L L K V I F - S C F Y - A H K N K F Q H F - K - F F K A A F I K P I L K I N F N T S K S N F L K L L L L S P . . 24914 CCAAACGGATCCTAA P N G S - Q T D P S K R I L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-8 (+strand): . . . . . . 24900 TTAGGATCCGTTTGGATGGGCTTAATAAAAGCAGCTTTAAAAAATTACTTTTAGAAGTGT L G S V W M G L I K A A L K N Y F - K C - D P F G W A - - K Q L - K I T F R S V R I R L D G L N K S S F K K L L L E V . . . . . . 24960 TGAAATTTATTTTTAAAATAAGCAGTTATGCGTTTGGATAAAAGTGCTGAAGTTGTTATA - N L F L K - A V M R L D K S A E V V I E I Y F - N K Q L C V W I K V L K L L Y L K F I F K I S S Y A F G - K C - S C Y . . . . . . 25020 TCAAACGTGAAAAGGGAAAAATGGAAGAAAGAGATGTTAGAGTTATATGAGTAATTTGGA S N V K R E K W K K E M L E L Y E - F G Q T - K G K N G R K R C - S Y M S N L E I K R E K G K M E E R D V R V I - V I W . . . . . . 25080 GATTGCATAAAAATATTAATGGCAAAAAGATAAAAATGTGGTCAACTTAAAACAGCTTAT D C I K I L M A K R - K C G Q L K T A Y I A - K Y - W Q K D K N V V N L K Q L I R L H K N I N G K K I K M W S T - N S L . . 25140 AAGCTAAAAAAAAAA K L K K K S - K K - A K K K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-9 (31915 31373,31090 31051,27343 27332,26858 26848,26013 25935,25736 25713) SCR (e 0.880 d 0.344 a 0.000,e 0.625 d 0.000 a 0.715,e 0.833 d 0.000 a 0.000,e 0.818 d 0.721 a 0.000,e 0.563 d 0.000 a 0.965,e 0.708) Exon 1 31915 31373 ( 543 n); score: 0.880 Intron 1 31372 31091 ( 282 n); Pd: 0.344 Pa: 0.000 Exon 2 31090 31051 ( 40 n); score: 0.625 Intron 2 31050 27344 (3707 n); Pd: 0.000 Pa: 0.715 Exon 3 27343 27332 ( 12 n); score: 0.833 Intron 3 27331 26859 ( 473 n); Pd: 0.000 Pa: 0.000 Exon 4 26858 26848 ( 11 n); score: 0.818 Intron 4 26847 26014 ( 834 n); Pd: 0.721 Pa: 0.000 Exon 5 26013 25935 ( 79 n); score: 0.563 Intron 5 25934 25737 ( 198 n); Pd: 0.000 Pa: 0.965 Exon 6 25736 25713 ( 24 n); score: 0.708 PGS (31531 31373,31090 31051,27343 27332,26858 26848,26013 25935,25736 25713) SGN-E578078+ PGS (31915 31390) SGN-E204434+ 3-phase translation of AGS-9 (-strand): . . . . . . 31915 GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGA E S L D K S T V I A S - T N K A P Y F - N P L T N R R - - L A K P T K L L I S D I P - Q I D G N S - L N Q Q S S L F L . . . . . . 31855 CACATTAGTAGGTCTTAACCAATTCTTCACTGTCTCAATCTTATAAGGATCCACCATCAC H I S R S - P I L H C L N L I R I H H H T L V G L N Q F F T V S I L - G S T I T T H - - V L T N S S L S Q S Y K D P P S . . . . . . 31795 GCCCTCCTTAGACACCACGTGCCCCAAGAAGGACACTGAATCAAGCCAAAATTCACACTT A L L R H H V P Q E G H - I K P K F T L P S L D T T C P K K D T E S S Q N S H L R P P - T P R A P R R T L N Q A K I H T . . . . . . 31735 GGATAATTTGGCATAGAGCTTCTTCTCCCTTAACATTTTCAGTACCATTCTCAAGTGTTC G - F G I E L L L P - H F Q Y H S Q V F D N L A - S F F S L N I F S T I L K C S W I I W H R A S S P L T F S V P F S S V . . . . . . 31675 CTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAA L M F L L A L - V Y Q Y I I N K Y D H K S C S F L L F E Y T N I S S I N T I T K P H V P S C S L S I P I Y H Q - I R S Q . . . . . . 31615 GAGATCCAGATATGGCTTAAAAATCCTATTCATCAAGCTCATGAAAGCAGCAGGGGCATT E I Q I W L K N P I H Q A H E S S R G I R S R Y G L K I L F I K L M K A A G A F R D P D M A - K S Y S S S S - K Q Q G H . . . . . . 31555 CGTAAGCCTAAAAGACATTACTAAGAACTCATAATGCCTATACCTGGTCCGAAAAGCAGT R K P K R H Y - E L I M P I P G P K S S V S L K D I T K N S - C L Y L V R K A V S - A - K T L L R T H N A Y T W S E K Q . . . . . . 31495 CTTGGGCACATCTGCTGCCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCGATTTT L G H I C C P Y F Q L M I T R S Q V D F L G T S A A R I F N - - - P D L K S I F S W A H L L P V F S I D D N Q I S S R F . . . . . . 31435 TGAGAAGGTACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGAGGAAGAGGATA - E G T S T L - L I E Q I I N A R K R I E K V Q A P C N - S N K S S M R G R G Y L R R Y K H L V T D R T N H Q C E E E D . : . . . . : . : 31375 CTT : CAGAAACTCATGGACTACCGAAACTGACTCAATTGACGGT : AAATCCGACTCA : AGATC L : Q K L M D Y R N - L N - R : - I R L : K I F : R N S W T T E T D S I D G : K S D S : R S T : S E T H G L P K L T Q L T V : N P T Q : D . : . . . . . 26853 TAGGAC : ACTTTGAATGCTCTTCTTTCAAAAATTAGTGTGTATAATGAATTTTTTTTAAAA - D : T L N A L L S K I S V Y N E F F L K R T : L - M L F F Q K L V C I M N F F - K L G : H F E C S S F K N - C V - - I F F K . . . : . . 25959 AAAAGATATATTTACATTAGATATG : ATAGTAGGGGCGATTCAACTCTAA K R Y I Y I R Y : D S R G D S T L K D I F T L D M : I V G A I Q L - K K I Y L H - I - : - - G R F N S Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-4_AGS-9_PPS_1 (31544 31373,31090 31051,27343 27332,26858 26848,26013 25985) (frame '0'; 261 bp, 87 residues) 1 KTLLRTHNAY TWSEKQSWAH LLPVFSIDDN QISSRFLRRY KHLVTDRTNH QCEEEDTSET 61 HGLPKLTQLT VNPTQDLGHF ECSSFKN- >C04HBa0077O05.1-_PGL-4_AGS-9_PPS_2 (31719 31522) (frame '2'; 195 bp, 65 residues) 1 SFFSLNIFST ILKCSSCSFL LFEYTNISSI NTITKRSRYG LKILFIKLMK AAGAFVSLKD 61 ITKNS- AGS-10 (27569 27003,26225 26198) SCR (e 0.873 d 0.949 a 0.000,e 0.786) Exon 1 27569 27003 ( 567 n); score: 0.873 Intron 1 27002 26226 ( 777 n); Pd: 0.949 Pa: 0.000 Exon 2 26225 26198 ( 28 n); score: 0.786 PGS (27569 27003,26225 26198) SGN-E550140- PGS (27569 27003,26225 26198) SGN-E389553- 3-phase translation of AGS-10 (-strand): . . . . . . 27569 TCGTTCGATCCTCTCTCTCTCTTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTT S F D P L S L F V L S I F F I Q T L F L R S I L S L S L F F L F S L F K P S F F V R S S L S L C S F Y F L Y S N P L S . . . . . . 27509 TTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACT L P - L A Y N - E - K M A I I T H - F T Y P N - H I I K N K R W Q - - P T N L L F T L I S I - L R I K D G N N N P L I Y . . . . . . 27449 CAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTT Q G Y L F - P P S N - T Y - H - P T N F K V T S F N P Q V I R L I N I N P L T L S R L P L L T P K - L D L L T L T H - L . . . . . . 27389 ATAATTAAAACAGGAATAGTCAAAAACTTCCTTTAAAACATTAAAGAAATCCGACTCAGC I I K T G I V K N F L - N I K E I R L S - L K Q E - S K T S F K T L K K S D S A Y N - N R N S Q K L P L K H - R N P T Q . . . . . . 27329 CTGGGATTACGCAGCCTGTGACGGCCTGTCATGCCTGCGACGGTCCGTCCTGCTGCTCCG L G L R S L - R P V M P A T V R P A A P W D Y A A C D G L S C L R R S V L L L R P G I T Q P V T A C H A C D G P S C C S . . . . . . 27269 TCACAGAGTTCAGAGACTCAATTCCCTTAAAGAGTCTGTGACGGTCCGTCACGCCTGTGA S Q S S E T Q F P - R V C D G P S R L - H R V Q R L N S L K E S V T V R H A C D V T E F R D S I P L K S L - R S V T P V . . . . . . 27209 CGGTCCGTCCTGCCATTCCGTTACGAAGTTTAGAGAGTCGATTTCAGTACCCATTTTTCA R S V L P F R Y E V - R V D F S T H F S G P S C H S V T K F R E S I S V P I F Q T V R P A I P L R S L E S R F Q Y P F F . . . . . . 27149 GAATTTCAAAGTGTTTTGAAACGAGACCCCCTCGACGGTCCGTCGTGCCCATGACGGTCC E F Q S V L K R D P L D G P S C P - R S N F K V F - N E T P S T V R R A H D G P R I S K C F E T R P P R R S V V P M T V . . . . . . 27089 GTCGTGGAATCCGTCGTCTCAGCCAGTTTTCCAGAAATAACATCTCTTGCTCAAAACGAC V V E S V V S A S F P E I T S L A Q N D S W N P S S Q P V F Q K - H L L L K T T R R G I R R L S Q F S R N N I S C S K R . . . : . . . 27029 TAAACAGGTCGTTACAATAAATATTAG : TTTAAACATTAAATGATTAATATTATTT - T G R Y N K Y - : F K H - M I N I I K Q V V T I N I S : L N I K - L I L F L N R S L Q - I L : V - T L N D - Y Y Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-4_AGS-10_PPS_1 (27370 27131) (frame '2'; 237 bp, 79 residues) 1 SKTSFKTLKK SDSAWDYAAC DGLSCLRRSV LLLRHRVQRL NSLKESVTVR HACDGPSCHS 61 VTKFRESISV PIFQNFKVF- >C04HBa0077O05.1-_PGL-4_AGS-10_PPS_2 (27228 27010) (frame '0'; 216 bp, 72 residues) 1 RSVTPVTVRP AIPLRSLESR FQYPFFRISK CFETRPPRRS VVPMTVRRGI RRLSQFSRNN 61 ISCSKRLNRS LQ- AGS-11 (27569 26959) SCR (e 0.852) Exon 1 27569 26959 ( 611 n); score: 0.852 PGS (27569 26959) SGN-E550212+ PGS (27569 26959) SGN-E550201+ PGS (27569 26959) SGN-E396056+ PGS (27569 26961) SGN-E389834+ 3-phase translation of AGS-11 (-strand): . . . . . . 27569 TCGTTCGATCCTCTCTCTCTCTTTGTTCTTTCTATTTTCTTTATTCAAACCCTCTTTCTT S F D P L S L F V L S I F F I Q T L F L R S I L S L S L F F L F S L F K P S F F V R S S L S L C S F Y F L Y S N P L S . . . . . . 27509 TTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACCCACTAATTTACT L P - L A Y N - E - K M A I I T H - F T Y P N - H I I K N K R W Q - - P T N L L F T L I S I - L R I K D G N N N P L I Y . . . . . . 27449 CAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCACTAACTTT Q G Y L F - P P S N - T Y - H - P T N F K V T S F N P Q V I R L I N I N P L T L S R L P L L T P K - L D L L T L T H - L . . . . . . 27389 ATAATTAAAACAGGAATAGTCAAAAACTTCCTTTAAAACATTAAAGAAATCCGACTCAGC I I K T G I V K N F L - N I K E I R L S - L K Q E - S K T S F K T L K K S D S A Y N - N R N S Q K L P L K H - R N P T Q . . . . . . 27329 CTGGGATTACGCAGCCTGTGACGGCCTGTCATGCCTGCGACGGTCCGTCCTGCTGCTCCG L G L R S L - R P V M P A T V R P A A P W D Y A A C D G L S C L R R S V L L L R P G I T Q P V T A C H A C D G P S C C S . . . . . . 27269 TCACAGAGTTCAGAGACTCAATTCCCTTAAAGAGTCTGTGACGGTCCGTCACGCCTGTGA S Q S S E T Q F P - R V C D G P S R L - H R V Q R L N S L K E S V T V R H A C D V T E F R D S I P L K S L - R S V T P V . . . . . . 27209 CGGTCCGTCCTGCCATTCCGTTACGAAGTTTAGAGAGTCGATTTCAGTACCCATTTTTCA R S V L P F R Y E V - R V D F S T H F S G P S C H S V T K F R E S I S V P I F Q T V R P A I P L R S L E S R F Q Y P F F . . . . . . 27149 GAATTTCAAAGTGTTTTGAAACGAGACCCCCTCGACGGTCCGTCGTGCCCATGACGGTCC E F Q S V L K R D P L D G P S C P - R S N F K V F - N E T P S T V R R A H D G P R I S K C F E T R P P R R S V V P M T V . . . . . . 27089 GTCGTGGAATCCGTCGTCTCAGCCAGTTTTCCAGAAATAACATCTCTTGCTCAAAACGAC V V E S V V S A S F P E I T S L A Q N D S W N P S S Q P V F Q K - H L L L K T T R R G I R R L S Q F S R N N I S C S K R . . . . . . 27029 TAAACAGGTCGTTACAATAAATATTAGGTATAATAGATAAATTTATCATTTTACCTGATC - T G R Y N K Y - V - - I N L S F Y L I K Q V V T I N I R Y N R - I Y H F T - S L N R S L Q - I L G I I D K F I I L P D . . 26969 TTATTTCACAT L F H Y F T L I S H Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-4_AGS-11_PPS_1 (27370 27131) (frame '2'; 237 bp, 79 residues) 1 SKTSFKTLKK SDSAWDYAAC DGLSCLRRSV LLLRHRVQRL NSLKESVTVR HACDGPSCHS 61 VTKFRESISV PIFQNFKVF- >C04HBa0077O05.1-_PGL-4_AGS-11_PPS_2 (27228 27010) (frame '0'; 216 bp, 72 residues) 1 RSVTPVTVRP AIPLRSLESR FQYPFFRISK CFETRPPRRS VVPMTVRRGI RRLSQFSRNN 61 ISCSKRLNRS LQ- 3-phase translation of AGS-11 (+strand): . . . . . . 26959 ATGTGAAATAAGATCAGGTAAAATGATAAATTTATCTATTATACCTAATATTTATTGTAA M - N K I R - N D K F I Y Y T - Y L L - C E I R S G K M I N L S I I P N I Y C N V K - D Q V K - - I Y L L Y L I F I V . . . . . . 27019 CGACCTGTTTAGTCGTTTTGAGCAAGAGATGTTATTTCTGGAAAACTGGCTGAGACGACG R P V - S F - A R D V I S G K L A E T T D L F S R F E Q E M L F L E N W L R R R T T C L V V L S K R C Y F W K T G - D D . . . . . . 27079 GATTCCACGACGGACCGTCATGGGCACGACGGACCGTCGAGGGGGTCTCGTTTCAAAACA D S T T D R H G H D G P S R G S R F K T I P R R T V M G T T D R R G G L V S K H G F H D G P S W A R R T V E G V S F Q N . . . . . . 27139 CTTTGAAATTCTGAAAAATGGGTACTGAAATCGACTCTCTAAACTTCGTAACGGAATGGC L - N S E K W V L K S T L - T S - R N G F E I L K N G Y - N R L S K L R N G M A T L K F - K M G T E I D S L N F V T E W . . . . . . 27199 AGGACGGACCGTCACAGGCGTGACGGACCGTCACAGACTCTTTAAGGGAATTGAGTCTCT R T D R H R R D G P S Q T L - G N - V S G R T V T G V T D R H R L F K G I E S L Q D G P S Q A - R T V T D S L R E L S L . . . . . . 27259 GAACTCTGTGACGGAGCAGCAGGACGGACCGTCGCAGGCATGACAGGCCGTCACAGGCTG E L C D G A A G R T V A G M T G R H R L N S V T E Q Q D G P S Q A - Q A V T G C - T L - R S S R T D R R R H D R P S Q A . . . . . . 27319 CGTAATCCCAGGCTGAGTCGGATTTCTTTAATGTTTTAAAGGAAGTTTTTGACTATTCCT R N P R L S R I S L M F - R K F L T I P V I P G - V G F L - C F K G S F - L F L A - S Q A E S D F F N V L K E V F D Y S . . . . . . 27379 GTTTTAATTATAAAGTTAGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAG V L I I K L V G - C - - V - L L G G - K F - L - S - W V N V N K S N Y L G V K R C F N Y K V S G L M L I S L I T W G L K . . . . . . 27439 AGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCT R - P - V N - W V I I A I F Y S - L Y A G N L E - I S G L L L P S F I L N Y M L E V T L S K L V G Y Y C H L L F L I I C . . . . . . 27499 AATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGAACAAAGAGAGAGAGA N - G K R K R V - I K K I E R T K R E R I R V K E R G F E - R K - K E Q R E R E - L G - K K E G L N K E N R K N K E R E . . 27559 GGATCGAACGA G S N D R T R I E R Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1+_PGL-4_AGS-11_PPS_1 (26960 27166) (frame '2'; 204 bp, 68 residues) 1 CEIRSGKMIN LSIIPNIYCN DLFSRFEQEM LFLENWLRRR IPRRTVMGTT DRRGGLVSKH 61 FEILKNGY- AGS-12 (28396 28209,28130 27799) SCR (e 0.824 d 0.000 a 0.000,e 0.914) Exon 1 28396 28209 ( 188 n); score: 0.824 Intron 1 28208 28131 ( 78 n); Pd: 0.000 Pa: 0.000 Exon 2 28130 27799 ( 332 n); score: 0.914 PGS (28396 28209,28130 27799) SGN-E242359- 3-phase translation of AGS-12 (-strand): . . . . . . 28396 AGTATATATCAGATAATATCATAAAATCAACTACAGTACTTAACATGCAACATTTACAAT S I Y Q I I S - N Q L Q Y L T C N I Y N V Y I R - Y H K I N Y S T - H A T F T I Y I S D N I I K S T T V L N M Q H L Q . . . . . . 28336 TACCATAACCCTTGGTCATAACACCAAACTCATCAATGAGGACTCACACCTCCCCATCAT Y H N P W S - H Q T H Q - G L T P P H H T I T L G H N T K L I N E D S H L P I I L P - P L V I T P N S S M R T H T S P S . . . . . . 28276 ACTCATTTGGGAATTAGGTTCATTAAATTAAGTATATTAACATATTTCAAGATTCATTCT T H L G I R F I K L S I L T Y F K I H S L I W E L G S L N - V Y - H I S R F I L Y S F G N - V H - I K Y I N I F Q D S F . : . . . . . 28216 CTTTACTA : TCCTGGTGTCGGAACGTGACACTCCGATCCTCATAAACTATCCTGGTACCGG L Y Y : P G V G T - H S D P H K L S W Y R F T : I L V S E R D T P I L I N Y P G T G S L L : S W C R N V T L R S S - T I L V P . . . . . . 28078 AACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGACACCCGATCCATATAC N V A P D P Y T I L V S E R D T R S I Y T W H P I H I L S W C R N V T P D P Y T E R G T R S I Y Y P G V G T - H P I H I . . . . . . 28018 TATCCTGGTGTCGGAACTTGACACTCCGATCCTCACATACTATCCTGGTACCGGAACGTG Y P G V G T - H S D P H I L S W Y R N V I L V S E L D T P I L T Y Y P G T G T W L S W C R N L T L R S S H T I L V P E R . . . . . . 27958 GCACCCGATCCATATACTATTCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTAT A P D P Y T I L V S E R D T P I L I Y Y H P I H I L F W C R N V T L R S S Y T I G T R S I Y Y S G V G T - H S D P H I L . . . . . . 27898 CCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTTCATCAAGCCTT P G T G T W H P I P - S H Y F R S S S L L V P E R G T R S P N L T T F V H Q A F S W Y R N V A P D P L I S L L S F I K P . . . . 27838 CTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAGG L L Y Q G I I I N K V D - F Y T K A S S L T K - I R S F I P R H H H - Q S R L Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-4_AGS-12_PPS_1 (28236 28209,28130 27805) (frame '2'; 351 bp, 117 residues) 1 HISRFILFTI LVSERDTPIL INYPGTGTWH PIHILSWCRN VTPDPYTILV SELDTPILTY 61 YPGTGTWHPI HILFWCRNVT LRSSYTILVP ERGTRSPNLT TFVHQAFFYT KASSLTK- AGS-13 (28627 28167,28048 27810) SCR (e 0.841 d 0.000 a 0.000,e 0.774) Exon 1 28627 28167 ( 461 n); score: 0.841 Intron 1 28166 28049 ( 118 n); Pd: 0.000 Pa: 0.000 Exon 2 28048 27810 ( 239 n); score: 0.774 PGS (28627 28167,28048 27810) SGN-E241789+ 3-phase translation of AGS-13 (-strand): . . . . . . 28627 ATGCCGGAACTTCAAGGCATCAAGACATAAAGAAGAAGATCCAGTCCAAGCTAGAAGCTT M P E L Q G I K T - R R R S S P S - K L C R N F K A S R H K E E D P V Q A R S F A G T S R H Q D I K K K I Q S K L E A . . . . . . 28567 TAGCTCACCCTGAAATCTAGTGTGATGAAGACTGGCTAGAGTTGCGGTTGGATTGAAGAC - L T L K S S V M K T G - S C G W I E D S S P - N L V - - R L A R V A V G L K T L A H P E I - C D E D W L E L R L D - R . . . . . . 28507 GACGATACGTTTGCTGCACTCCACAATGAACAAAAAGAAAACATACAAGTAGGGGTCAGT D D T F A A L H N E Q K E N I Q V G V S T I R L L H S T M N K K K T Y K - G S V R R Y V C C T P Q - T K R K H T S R G Q . . . . . . 28447 AGAAAACACGAGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATATAT R K H E Y - V D I I G Q L K I E N S I Y E N T S T E - I S S A N S K - K T V Y I - K T R V L S R Y H R P T Q N R K Q Y I . . . . . . 28387 CAGATAATATCATAAAATCAACTACAGTACTTAACATGCAACATTTACAATTACCATAAC Q I I S - N Q L Q Y L T C N I Y N Y H N R - Y H K I N Y S T - H A T F T I T I T S D N I I K S T T V L N M Q H L Q L P - . . . . . . 28327 CCTTGGTCATAACACCAAACTCATCAATGAGGACTCACACCTCCCCATCATACTCATTTG P W S - H Q T H Q - G L T P P H H T H L L G H N T K L I N E D S H L P I I L I W P L V I T P N S S M R T H T S P S Y S F . . . . . . 28267 GGAATTAGGTTCATTAAATTAAGTATATTAACATATTTCAAGATTCATTCTCTTTACTAA G I R F I K L S I L T Y F K I H S L Y - E L G S L N - V Y - H I S R F I L F T N G N - V H - I K Y I N I F Q D S F S L L . . . . . : . 28207 TCCTGGTGCCGGAACGTGACACTCCGATCCTCATATACTAT : GTGTCGGAACGTGACACCC S W C R N V T L R S S Y T M : C R N V T P P G A G T - H S D P H I L : C V G T - H P I L V P E R D T P I L I Y Y : V S E R D T . . . . . . 28029 GATCCATATACTATCCTGGTGTCGGAACTTGACACTCCGATCCTCACATACTATCCTGGT D P Y T I L V S E L D T P I L T Y Y P G I H I L S W C R N L T L R S S H T I L V R S I Y Y P G V G T - H S D P H I L S W . . . . . . 27969 ACCGGAACGTGGCACCCGATCCATATACTATTCTGGTGTCGGAACGTGACACTCCGATCC T G T W H P I H I L F W C R N V T L R S P E R G T R S I Y Y S G V G T - H S D P Y R N V A P D P Y T I L V S E R D T P I . . . . . . 27909 TCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTT S Y T I L V P E R G T R S P N L T T F V H I L S W Y R N V A P D P L I S L L S F L I Y Y P G T G T W H P I P - S H Y F R . . . . 27849 CATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAA H Q A F F Y T K A S S L T I K P S F I P R H H H - Q S S S L L L Y Q G I I I N Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-4_AGS-13_PPS_1 (28207 28167,28048 27811) (frame '1'; 279 bp, 93 residues) 1 SWCRNVTLRS SYTMCRNVTP DPYTILVSEL DTPILTYYPG TGTWHPIHIL FWCRNVTLRS 61 SYTILVPERG TRSPNLTTFV HQAFFYTKAS SLT AGS-14 (28430 28132,28097 28018,27983 27853) SCR (e 0.747 d 0.000 a 0.000,e 0.806 d 0.000 a 0.000,e 0.836) Exon 1 28430 28132 ( 299 n); score: 0.747 Intron 1 28131 28098 ( 34 n); Pd: 0.000 Pa: 0.000 Exon 2 28097 28018 ( 80 n); score: 0.806 Intron 2 28017 27984 ( 34 n); Pd: 0.000 Pa: 0.000 Exon 3 27983 27853 ( 131 n); score: 0.836 PGS (28430 28132,28097 28018,27983 27853) SGN-E349977- 3-phase translation of AGS-14 (-strand): . . . . . . 28430 AGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATATCATAAAA S R Y H R P T Q N R K Q Y I S D N I I K V D I I G Q L K I E N S I Y Q I I S - N - I S S A N S K - K T V Y I R - Y H K . . . . . . 28370 TCAACTACAGTACTTAACATGCAACATTTACAATTACCATAACCCTTGGTCATAACACCA S T T V L N M Q H L Q L P - P L V I T P Q L Q Y L T C N I Y N Y H N P W S - H Q I N Y S T - H A T F T I T I T L G H N T . . . . . . 28310 AACTCATCAATGAGGACTCACACCTCCCCATCATACTCATTTGGGAATTAGGTTCATTAA N S S M R T H T S P S Y S F G N - V H - T H Q - G L T P P H H T H L G I R F I K K L I N E D S H L P I I L I W E L G S L . . . . . . 28250 ATTAAGTATATTAACATATTTCAAGATTCATTCTCTTTACTAATCCTGGTGCCGGAACGT I K Y I N I F Q D S F S L L I L V P E R L S I L T Y F K I H S L Y - S W C R N V N - V Y - H I S R F I L F T N P G A G T . . . . . . : 28190 GACACTCCGATCCTCATATACTATCCTGGTACCAGAATGTGGCACCCGATCCATATACT : T D T P I L I Y Y P G T R M W H P I H I L : T L R S S Y T I L V P E C G T R S I Y : L - H S D P H I L S W Y Q N V A P D P Y T : . . . . . . 28096 AAACTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGT K L S W Y R N V A P D P Y T I L V S E R N Y P G T G T W H P I H I L S W C R N V - T I L V P E R G T R S I Y Y P G V G T . . : . . . . 28036 GACACCCGATCCATATACT : CATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATA D T R S I Y : S Y Y P G T G T W H P I H I T P D P Y T : H T I L V P E R G T R S I Y - H P I H I L : I L S W Y R N V A P D P Y . . . . . . 27942 CTATTCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGT L F W C R N V T L R S S Y T I L V P E R Y S G V G T - H S D P H I L S W Y R N V T I L V S E R D T P I L I Y Y P G T G T . . . 27882 GGCACCCGATCCCCTAATCTCACTACTTTC G T R S P N L T T F A P D P L I S L L W H P I P - S H Y F Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-4_AGS-14_PPS_1 (28250 28132,28097 28018,27983 27853) (frame '1'; 330 bp, 110 residues) 1 IKYINIFQDS FSLLILVPER DTPILIYYPG TRMWHPIHIL KLSWYRNVAP DPYTILVSER 61 DTRSIYSYYP GTGTWHPIHI LFWCRNVTLR SSYTILVPER GTRSPNLTTF AGS-15 (28731 28172,28021 27885) SCR (e 0.792 d 0.000 a 0.000,e 0.920) Exon 1 28731 28172 ( 560 n); score: 0.792 Intron 1 28171 28022 ( 150 n); Pd: 0.000 Pa: 0.000 Exon 2 28021 27885 ( 137 n); score: 0.920 PGS (28731 28172,28021 27885) SGN-E546506+ 3-phase translation of AGS-15 (-strand): . . . . . . 28731 TATTATTATCCCCAAAATCTGGAAGTCATTATCACAAGAACATCTACTTCAAATTACTAA Y Y Y P Q N L E V I I T R T S T S N Y - I I I P K I W K S L S Q E H L L Q I T K L L S P K S G S H Y H K N I Y F K L L . . . . . . 28671 ATCTAAGAGTATCTAAGAAGTTAAAATACATAAACAGCTAGTCCATGCCGGAACTTCAAG I - E Y L R S - N T - T A S P C R N F K S K S I - E V K I H K Q L V H A G T S R N L R V S K K L K Y I N S - S M P E L Q . . . . . . 28611 GCATCAAGACATAAAGAAGAAGATCCAGTCCAAGCTAGAAGCTTTAGCTCACCCTGAAAT A S R H K E E D P V Q A R S F S S P - N H Q D I K K K I Q S K L E A L A H P E I G I K T - R R R S S P S - K L - L T L K . . . . . . 28551 CTAGTGTGATGAAGACTGGCTAGAGTTGCGGTTGGATTGAAGACGACGATACGTTTGCTG L V - - R L A R V A V G L K T T I R L L - C D E D W L E L R L D - R R R Y V C C S S V M K T G - S C G W I E D D D T F A . . . . . . 28491 CACTCCACAATGAACAAAAAGAAAACATACAAGTAGGGGTCAGTAGAAAACACGAGTACT H S T M N K K K T Y K - G S V E N T S T T P Q - T K R K H T S R G Q - K T R V L A L H N E Q K E N I Q V G V S R K H E Y . . . . . . 28431 GAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATATCATAAA E - I S S A N S K - K T V Y I R - Y H K S R Y H R P T Q N R K Q Y I S D N I I K - V D I I G Q L K I E N S I Y Q I I S - . . . . . . 28371 ATCAACTACAGTACTTAACATGCAACATTTACAATTACCATAACCCTTGGTCATAACACC I N Y S T - H A T F T I T I T L G H N T S T T V L N M Q H L Q L P - P L V I T P N Q L Q Y L T C N I Y N Y H N P W S - H . . . . . . 28311 AAACTCATCAATGAGGACTCACACCTCCCCATCATACTCATTTGGGAATTAGGTTCATTA K L I N E D S H L P I I L I W E L G S L N S S M R T H T S P S Y S F G N - V H - Q T H Q - G L T P P H H T H L G I R F I . . . . . . 28251 AATTAAGTATATTAACATATTTCAAGATTCATTCTCTTTACTAATCCTGGTGCCGGAACG N - V Y - H I S R F I L F T N P G A G T I K Y I N I F Q D S F S L L I L V P E R K L S I L T Y F K I H S L Y - S W C R N . . : . . . . 28191 TGACACTCCGATCCTCATAT : TACTATCCTGGTGTCGGAACTTGACACTCCGATCCTCACA - H S D P H I : T I L V S E L D T P I L T D T P I L I : L L S W C R N L T L R S S H V T L R S S Y : Y Y P G V G T - H S D P H . . . . . . 27981 TACTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATTCTGGTGTCGGAACGTG Y Y P G T G T W H P I H I L F W C R N V T I L V P E R G T R S I Y Y S G V G T - I L S W Y R N V A P D P Y T I L V S E R . . . . 27921 ACACTCCGATCCTCATATACTATCCTGGTACCGGAAC T L R S S Y T I L V P E H S D P H I L S W Y R N D T P I L I Y Y P G T G Maximal non-overlapping open reading frames (>= 64 codons): none AGS-16 (28163 28062) SCR (e 0.863) Exon 1 28163 28062 ( 102 n); score: 0.863 PGS (28163 28062) SGN-E546548- 3-phase translation of AGS-16 (-strand): . . . . . . 28163 GGTACCAGAATGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGACACTCCGA G T R M W H P I H I L S W C R N V T L R V P E C G T R S I Y Y P G V G T - H S D Y Q N V A P D P Y T I L V S E R D T P . . . . . 28103 TCCTCATAAACTATCCTGGTACCGGAACGTGGCACCCGATCC S S - T I L V P E R G T R S P H K L S W Y R N V A P D I L I N Y P G T G T W H P I Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-16 (+strand): . . . . . . 28062 GGATCGGGTGCCACGTTCCGGTACCAGGATAGTTTATGAGGATCGGAGTGTCACGTTCCG G S G A T F R Y Q D S L - G S E C H V P D R V P R S G T R I V Y E D R S V T F R I G C H V P V P G - F M R I G V S R S . . . . . 28122 ACACCAGGATAGTATATGGATCGGGTGCCACATTCTGGTACC T P G - Y M D R V P H S G T H Q D S I W I G C H I L V D T R I V Y G S G A T F W Y Maximal non-overlapping open reading frames (>= 64 codons): none AGS-17 (31915 29212) SCR (e 0.891) Exon 1 31915 29212 (2704 n); score: 0.891 PGS (29641 29212) SGN-E352180+ PGS (29829 29276) SGN-E329287- PGS (29999 29280) SGN-E356614+ PGS (29996 29333) SGN-E352401+ PGS (30195 29490) SGN-E349404+ PGS (30195 29522) SGN-E351625+ PGS (30195 29587) SGN-E357065+ PGS (30195 29681) SGN-E352365+ PGS (30632 29847) SGN-E356912+ PGS (30479 29863) SGN-E356209+ PGS (30712 29953) SGN-E214046+ PGS (30630 30102) SGN-E353805+ PGS (30716 30163) SGN-E244046+ PGS (31099 30557) SGN-E355026+ PGS (31323 30565) SGN-E355244+ PGS (30923 30593) SGN-E352716+ PGS (31283 30623) SGN-E352117- PGS (31323 30666) SGN-E351414+ PGS (31084 30692) SGN-E242765+ PGS (31395 30737) SGN-E355232+ PGS (31844 31170) SGN-E368762+ PGS (31915 31203) SGN-E379315+ PGS (31915 31320) SGN-E375319+ 3-phase translation of AGS-17 (-strand): . . . . . . 31915 GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGA E S L D K S T V I A S - T N K A P Y F - N P L T N R R - - L A K P T K L L I S D I P - Q I D G N S - L N Q Q S S L F L . . . . . . 31855 CACATTAGTAGGTCTTAACCAATTCTTCACTGTCTCAATCTTATAAGGATCCACCATCAC H I S R S - P I L H C L N L I R I H H H T L V G L N Q F F T V S I L - G S T I T T H - - V L T N S S L S Q S Y K D P P S . . . . . . 31795 GCCCTCCTTAGACACCACGTGCCCCAAGAAGGACACTGAATCAAGCCAAAATTCACACTT A L L R H H V P Q E G H - I K P K F T L P S L D T T C P K K D T E S S Q N S H L R P P - T P R A P R R T L N Q A K I H T . . . . . . 31735 GGATAATTTGGCATAGAGCTTCTTCTCCCTTAACATTTTCAGTACCATTCTCAAGTGTTC G - F G I E L L L P - H F Q Y H S Q V F D N L A - S F F S L N I F S T I L K C S W I I W H R A S S P L T F S V P F S S V . . . . . . 31675 CTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACAAA L M F L L A L - V Y Q Y I I N K Y D H K S C S F L L F E Y T N I S S I N T I T K P H V P S C S L S I P I Y H Q - I R S Q . . . . . . 31615 GAGATCCAGATATGGCTTAAAAATCCTATTCATCAAGCTCATGAAAGCAGCAGGGGCATT E I Q I W L K N P I H Q A H E S S R G I R S R Y G L K I L F I K L M K A A G A F R D P D M A - K S Y S S S S - K Q Q G H . . . . . . 31555 CGTAAGCCTAAAAGACATTACTAAGAACTCATAATGCCTATACCTGGTCCGAAAAGCAGT R K P K R H Y - E L I M P I P G P K S S V S L K D I T K N S - C L Y L V R K A V S - A - K T L L R T H N A Y T W S E K Q . . . . . . 31495 CTTGGGCACATCTGCTGCCCGTATTTTCAATTGATGATAACCAGATCTCAAGTCGATTTT L G H I C C P Y F Q L M I T R S Q V D F L G T S A A R I F N - - - P D L K S I F S W A H L L P V F S I D D N Q I S S R F . . . . . . 31435 TGAGAAGGTACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGAGGAAGAGGATA - E G T S T L - L I E Q I I N A R K R I E K V Q A P C N - S N K S S M R G R G Y L R R Y K H L V T D R T N H Q C E E E D . . . . . . 31375 CTTGTTCTTAATCGTTACCTTATTTAGTTGTCTGTAATCTATGCACATCCTAAAACTTCC L V L N R Y L I - L S V I Y A H P K T S L F L I V T L F S C L - S M H I L K L P T C S - S L P Y L V V C N L C T S - N F . . . . . . 31315 ACCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAA T L L L H K Q N R S T P R G C T W S N E P F F F T N K T G A P Q G D A L G L M K H P S S S Q T K P E H P K G M H L V - - . . . . . . 31255 GCCTTTGCTCAACAACTCTTGCAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCTAT A F A Q Q L L Q L G L - L S - L R G S Y P L L N N S C S W A F N S L N S A G A I S L C S T T L A V G P L T L L T P R E L . . . . . . 31195 TGTATAAGGGGGTATAGAAATGGGGCCAATACCCGGTTCAAGATCAATGTAGAAGTCAAT C I R G Y R N G A N T R F K I N V E V N V - G G I E M G P I P G S R S M - K S I L Y K G V - K W G Q Y P V Q D Q C R S Q . . . . . . 31135 ATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCATGGAC I P I W W H T R K I C R E H I Q K L M D S L S G G I P G R S A G N T S R N S W T Y P Y L V A Y Q E D L Q G T H P E T H G . . . . . . 31075 TACCGAAACTGACTCAATTGACGGTACTTGGGTAGTGTCATCCCTGAGGTGTGCCAAGAA Y R N - L N - R Y L G S V I P E V C Q E T E T D S I D G T W V V S S L R C A K K L P K L T Q L T V L G - C H P - G V P R . . . . . . 31015 AGCTAAACAACCCTTACTAACCATTCTCTTAGCACGAAGAAAGGAGATGATACGAACCGG S - T T L T N H S L S T K K G D D T N R A K Q P L L T I L L A R R K E M I R T G K L N N P Y - P F S - H E E R R - Y E P . . . . . . 30955 GTTGGAAGTGTAGTTACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCAC V G S V V T L P H - R I C P R L G - R H L E V - L P S H T N G S V P G L A N V T G W K C S Y P P T L T D L S Q A W L T S . . . . . . 30895 AGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAAT S F S I T I Q D C K I W R K P S H T Q N V L A L Q S K I A K F G E S Q V I P R I Q F - H Y N P R L Q N L E K A K S Y P E . . . . . . 30835 TACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAA Y I E V N H F - D N Q V Y M S I A P H K T S K S T I S K I T K S T - V L L P T K L H R S Q P F L R - P S L H E Y C S P Q . . . . . . 30775 AGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGA S H Q T R P I Y F F N Y H R L T H R S R V T R P D L Y T F S T I T D S P T G V E K S P D Q T Y I L F Q L S Q T H P P E - . . . . . . 30715 AACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGA N T N R H V K Q F T M - I K T I S K - G T R I G M S S N S Q C K L R P L A N E E K H E - A C Q A I H N V N - D H - Q M R . . . . . . 30655 AGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAAC R Y I R K C G S R I K Q Y R S H A I T N D T - E N V D P G S N N T E A M Q S Q T K I H K K M W I Q D Q T I Q K P C N H K . . . . . . 30595 CAAAAGATTACCTGTGATAACAACATCAGATGTCTCCGCTTCAGACCGCCCAGGGAAGGC Q K I T C D N N I R C L R F R P P R E G K R L P V I T T S D V S A S D R P G K A P K D Y L - - Q H Q M S P L Q T A Q G R . . . . . . 30535 GTAACAATGGGCCCTATCACCTGTTTGCCCGTTACCCCAACCATGCTGCACCGCAGCCAG V T M G P I T C L P V T P T M L H R S Q - Q W A L S P V C P L P Q P C C T A A S R N N G P Y H L F A R Y P N H A A P Q P . . . . . . 30475 TTTGCCCGCCACCCCGGTTGGTTTGGTGACCATCATTACCTCGGCCACCACGTTCTCCAG F A R H P G W F G D H H Y L G H H V L Q L P A T P V G L V T I I T S A T T F S R V C P P P R L V W - P S L P R P P R S P . . . . . . 30415 GATAACGACCTCTTCTATGACCACCTCTACCTCTAACTATTGGAGGTCTGTAACTCTGTT D N D L F Y D H L Y L - L L E V C N S V I T T S S M T T S T S N Y W R S V T L F G - R P L L - P P L P L T I G G L - L C . . . . . . 30355 TTGGACAATACCTCTTAATGTGTCCAGTCTCCCCACATCCATAACACTCTCTGGATTTAA L D N T S - C V Q S P H I H N T L W I - W T I P L N V S S L P T S I T L S G F K F G Q Y L L M C P V S P H P - H S L D L . . . . . . 30295 GCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTAAGGTGGACCCCCAACTACAGTCTGTA A - V S Q R S V D R S K V D P Q L Q S V H R S L R E V L T G L R W T P N Y S L - S I G L S E K C - P V - G G P P T T V C . . . . . . 30235 GTGAAGACTGAATTGGTCGGACTGAGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAAC V K T E L V G L S N L L N P V L - S K N - R L N W S D - V T S - T L S S R V R T S E D - I G R T E - P P E P C P L E - E . . . . . . 30175 CATTAAACTCACCTCCCCTTCGAAAACTTTTTGATGTCGATGCCATGGTGAAGTCATCTG H - T H L P F E N F L M S M P W - S H L I K L T S P S K T F - C R C H G E V I W P L N S P P L R K L F D V D A M V K S S . . . . . . 30115 GCTTCACTCCTTCCACCTCTATCACGAAGTCCACCACTTCTTGAAAGGATTTTGCCGTAG A S L L P P L S R S P P L L E R I L P - L H S F H L Y H E V H H F L K G F C R S G F T P S T S I T K S T T S - K D F A V . . . . . . 30055 TCGCTACCTATAAGGCTAAAAATCCGCAATTCTGACCTCAACCCCTTCACAAAACGGCAA S L P I R L K I R N S D L N P F T K R Q R Y L - G - K S A I L T S T P S Q N G K V A T Y K A K N P Q F - P Q P L H K T A . . . . . . 29995 ATCCGCTCTTATGGACTGAAACAAAGCTGAGTGGCATATCTGGAAAGTTCACGAAACTTA I R S Y G L K Q S - V A Y L E S S R N L S A L M D - N K A E W H I W K V H E T - N P L L W T E T K L S G I S G K F T K L . . . . . . 29935 GCCTCATATGCAGTAACCGACATCTTACCTTGCTCTAGGCTCAAGAATTCATCTCTTTTC A S Y A V T D I L P C S R L K N S S L F P H M Q - P T S Y L A L G S R I H L F S S L I C S N R H L T L L - A Q E F I S F . . . . . . 29875 CTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAGACAAGCTAGAGAATGATGCCCAA L S L K V R G I Y F S I D K L E N D A Q Y P S K F G G Y T S P - T S - R M M P K P I P Q S S G D I L L H R Q A R E - C P . . . . . . 29815 GTCATAGGTGGTGCCTCTGTTGGTTGACACTCCACATGCGACCGCCACCACATTTTGGCG V I G G A S V G - H S T C D R H H I L A S - V V P L L V D T P H A T A T T F W R S H R W C L C W L T L H M R P P P H F G . . . . . . 29755 TTCCCTTGAAACTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTG F P - N - - V T N S T P N R S T I P I L S L E T D K S Q T Q H Q T V L L Y P S C V P L K L I S H K L N T K P F Y Y T H L . . . . . . 29695 TGTAGTAGCTCATGAAACTCAACCAGAAAATCGTATGCATCCTCAGATTCAGCACCCTTG C S S S - N S T R K S Y A S S D S A P L V V A H E T Q P E N R M H P Q I Q H P - V - - L M K L N Q K I V C I L R F S T L . . . . . . 29635 AAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATT K T G G F N F K N L L K S S C - S F V I R L E V S I S R T Y - K V H A D H L S L E D W R F Q F Q E L T E K F M L I I C H . . . . . . 29575 ATAGGCCCTGTAGTCAGACGAGGAAATGTGCCTATTTACAATGAGGCATCCATGCAGGGA I G P V V R R G N V P I Y N E A S M Q G - A L - S D E E M C L F T M R H P C R E Y R P C S Q T R K C A Y L Q - G I H A G . . . . . . 29515 GCCACAGTAGTCGCATGTTGTACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGA A T V V A C C T S G A - G A G A E N T G P Q - S H V V P P E P E V L V Q K T L E S H S S R M L Y L R S L R C W C R K H W . . . . . . 29455 GGTGTCTGGCCTTGATCAGATAGCCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCT G V W P - S D S P L R - A R T - L I I S V S G L D Q I A R - D K Q E P D - S S L R C L A L I R - P A K I S K N L I D H L . . . . . . 29395 GGGGTAGGTTGGGGTGGCAATTCCTCATTCTGTACTTGCTCATTTTCCCTTTCCTCACCC G V G W G G N S S F C T C S F S L S S P G - V G V A I P H S V L A H F P F P H P W G R L G W Q F L I L Y L L I F P F L T . . . . . . 29335 TCTCTTACCACTTCCTCAGTTGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTAGGT S L T T S S V G G G V T A L V P D G L G L L P L P Q L V E E S P P - Y Q M G - V L S Y H F L S W W R S H R P S T R W A R . . . . . . 29275 GCTCGTCCTCTTCTCCTAGAGGACGTCCTCCCACGATCTCTTCCGCGGCCTCTTGCCACT A R P L L L E D V L P R S L P R P L A T L V L F S - R T S S H D L F R G L L P L C S S S S P R G R P P T I S S A A S C H . 29215 GCTC A L C Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-4_AGS-17_PPS_1 (30531 30235) (frame '2'; 294 bp, 98 residues) 1 QWALSPVCPL PQPCCTAASL PATPVGLVTI ITSATTFSRI TTSSMTTSTS NYWRSVTLFW 61 TIPLNVSSLP TSITLSGFKH RSLREVLTGL RWTPNYSL- >C04HBa0077O05.1-_PGL-4_AGS-17_PPS_2 (30658 30380) (frame '1'; 276 bp, 92 residues) 1 GRYIRKCGSR IKQYRSHAIT NQKITCDNNI RCLRFRPPRE GVTMGPITCL PVTPTMLHRS 61 QFARHPGWFG DHHYLGHHVL QDNDLFYDHL YL- >C04HBa0077O05.1-_PGL-4_AGS-17_PPS_3 (29432 29214) (frame '0'; 219 bp, 73 residues) 1 PAKISKNLID HLWGRLGWQF LILYLLIFPF LTLSYHFLSW WRSHRPSTRW ARCSSSSPRG 61 RPPTISSAAS CHC >C04HBa0077O05.1-_PGL-4_AGS-17_PPS_4 (31143 30943) (frame '2'; 198 bp, 66 residues) 1 KSISLSGGIP GRSAGNTSRN SWTTETDSID GTWVVSSLRC AKKAKQPLLT ILLARRKEMI 61 RTGLEV- >C04HBa0077O05.1-_PGL-4_AGS-17_PPS_5 (31719 31522) (frame '2'; 195 bp, 65 residues) 1 SFFSLNIFST ILKCSSCSFL LFEYTNISSI NTITKRSRYG LKILFIKLMK AAGAFVSLKD 61 ITKNS- 3-phase translation of AGS-17 (+strand): . . . . . . 29212 GAGCAGTGGCAAGAGGCCGCGGAAGAGATCGTGGGAGGACGTCCTCTAGGAGAAGAGGAC E Q W Q E A A E E I V G G R P L G E E D S S G K R P R K R S W E D V L - E K R T A V A R G R G R D R G R T S S R R R G . . . . . . 29272 GAGCACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCAACTGAGGAAGTGGTAA E H L A H L V L G R - L L H Q L R K W - S T - P I W Y - G G D S S T N - G S G K R A P S P S G T R A V T P P P T E E V V . . . . . . 29332 GAGAGGGTGAGGAAAGGGAAAATGAGCAAGTACAGAATGAGGAATTGCCACCCCAACCTA E R V R K G K M S K Y R M R N C H P N L R G - G K G K - A S T E - G I A T P T Y R E G E E R E N E Q V Q N E E L P P Q P . . . . . . 29392 CCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGCTATCTGATCAAGGCCAGA P Q R - S I R F L L I L A G Y L I K A R P R D D Q S G S C L S - R A I - S R P D T P E M I N Q V L A Y L S G L S D Q G Q . . . . . . 29452 CACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGACTACTG H L Q C F L H Q H L R L R R Y N M R L L T S S V F C T S T S G S G G T T C D Y C T P P V F S A P A P Q A P E V Q H A T T . . . . . . 29512 TGGCTCCCTGCATGGATGCCTCATTGTAAATAGGCACATTTCCTCGTCTGACTACAGGGC W L P A W M P H C K - A H F L V - L Q G G S L H G C L I V N R H I S S S D Y R A V A P C M D A S L - I G T F P R L T T G . . . . . . 29572 CTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAG L - - Q M I S M N F S V S S - N - N L Q Y N D K - S A - T F Q - V L E I E T S S P I M T N D Q H E L F S K F L K L K P P . . . . . . 29632 TCTTCAAGGGTGCTGAATCTGAGGATGCATACGATTTTCTGGTTGAGTTTCATGAGCTAC S S R V L N L R M H T I F W L S F M S Y L Q G C - I - G C I R F S G - V S - A T V F K G A E S E D A Y D F L V E F H E L . . . . . . 29692 TACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAG Y T R W V - - N G L V L S L - L I S F K T Q D G Y S R T V W C - V C D L S V S R L H K M G I V E R F G V E F V T Y Q F Q . . . . . . 29752 GGAACGCCAAAATGTGGTGGCGGTCGCATGTGGAGTGTCAACCAACAGAGGCACCACCTA G T P K C G G G R M W S V N Q Q R H H L E R Q N V V A V A C G V S T N R G T T Y G N A K M W W R S H V E C Q P T E A P P . . . . . . 29812 TGACTTGGGCATCATTCTCTAGCTTGTCTATGGAGAAGTATATCCCCCGAACTTTGAGGG - L G H H S L A C L W R S I S P E L - G D L G I I L - L V Y G E V Y P P N F E G M T W A S F S S L S M E K Y I P R T L R . . . . . . 29872 ATAGGAAAAGAGATGAATTCTTGAGCCTAGAGCAAGGTAAGATGTCGGTTACTGCATATG I G K E M N S - A - S K V R C R L L H M - E K R - I L E P R A R - D V G Y C I - D R K R D E F L S L E Q G K M S V T A Y . . . . . . 29932 AGGCTAAGTTTCGTGAACTTTCCAGATATGCCACTCAGCTTTGTTTCAGTCCATAAGAGC R L S F V N F P D M P L S F V S V H K S G - V S - T F Q I C H S A L F Q S I R A E A K F R E L S R Y A T Q L C F S P - E . . . . . . 29992 GGATTTGCCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTTTAGCCTTATAGGTA G F A V L - R G - G Q N C G F L A L - V D L P F C E G V E V R I A D F - P Y R - R I C R F V K G L R S E L R I F S L I G . . . . . . 30052 GCGACTACGGCAAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTGGAAGGAGTG A T T A K S F Q E V V D F V I E V E G V R L R Q N P F K K W W T S - - R W K E - S D Y G K I L S R S G G L R D R G G R S . . . . . . 30112 AAGCCAGATGACTTCACCATGGCATCGACATCAAAAAGTTTTCGAAGGGGAGGTGAGTTT K P D D F T M A S T S K S F R R G G E F S Q M T S P W H R H Q K V F E G E V S L E A R - L H H G I D I K K F S K G R - V . . . . . . 30172 AATGGTTCTTACTCTAGAGGACAGGGTTCAGGAGGTTACTCAGTCCGACCAATTCAGTCT N G S Y S R G Q G S G G Y S V R P I Q S M V L T L E D R V Q E V T Q S D Q F S L - W F L L - R T G F R R L L S P T N S V . . . . . . 30232 TCACTACAGACTGTAGTTGGGGGTCCACCTTAGACCGGTCAACACTTCTCTGAGAGACCT S L Q T V V G G P P - T G Q H F S E R P H Y R L - L G V H L R P V N T S L R D L F T T D C S W G S T L D R S T L L - E T . . . . . . 30292 ATGCTTAAATCCAGAGAGTGTTATGGATGTGGGGAGACTGGACACATTAAGAGGTATTGT M L K S R E C Y G C G E T G H I K R Y C C L N P E S V M D V G R L D T L R G I V Y A - I Q R V L W M W G D W T H - E V L . . . . . . 30352 CCAAAACAGAGTTACAGACCTCCAATAGTTAGAGGTAGAGGTGGTCATAGAAGAGGTCGT P K Q S Y R P P I V R G R G G H R R G R Q N R V T D L Q - L E V E V V I E E V V S K T E L Q T S N S - R - R W S - K R S . . . . . . 30412 TATCCTGGAGAACGTGGTGGCCGAGGTAATGATGGTCACCAAACCAACCGGGGTGGCGGG Y P G E R G G R G N D G H Q T N R G G G I L E N V V A E V M M V T K P T G V A G L S W R T W W P R - - W S P N Q P G W R . . . . . . 30472 CAAACTGGCTGCGGTGCAGCATGGTTGGGGTAACGGGCAAACAGGTGATAGGGCCCATTG Q T G C G A A W L G - R A N R - - G P L K L A A V Q H G W G N G Q T G D R A H C A N W L R C S M V G V T G K Q V I G P I . . . . . . 30532 TTACGCCTTCCCTGGGCGGTCTGAAGCGGAGACATCTGATGTTGTTATCACAGGTAATCT L R L P W A V - S G D I - C C Y H R - S Y A F P G R S E A E T S D V V I T G N L V T P S L G G L K R R H L M L L S Q V I . . . . . . 30592 TTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGT F G L - L H G F C I V - S W I H I F L C L V C D C M A S V L F D P G S T F S Y V F W F V I A W L L Y C L I L D P H F L M . . . . . . 30652 ATCTTCCTCATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCG I F L I C - W S - F T L - I A - H A Y S S S S F A N G L N L H C E L L D M P I R Y L P H L L M V L I Y I V N C L T C L F . . . . . . 30712 TGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTGGTCTGGT C F Y S G G - V C D S - K S I - V W S G V S T P V G E S V I V E K V Y R S G L V V F L L R W V S L - - L K K Y I G L V W . . . . . . 30772 GACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGA D F C G E Q Y S C R L G Y L R N G - L R T F V G S N T H V D L V I L E M V D F D - L L W G A I L M - T W L S - K W L T S . . . . . . 30832 TGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAA C N S G Y D L A F S K F C N L G L - C - V I L G M T W L S P N F A I L D C N A K M - F W V - L G F L Q I L Q S W I V M L . . . . . . 30892 AACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTAACTACACTTC N C D V S Q A W D R S V S V G G - L H F T V T L A K P G T D P L V W E G N Y T S K L - R - P S L G Q I R - C G R V T T L . . . . . . 30952 CAACCCGGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTT Q P G S Y H L L S S C - E N G - - G L F N P V R I I S F L R A K R M V S K G C L P T R F V S S P F F V L R E W L V R V V . . . . . . 31012 AGCTTTCTTGGCACACCTCAGGGATGACACTACCCAAGTACCGTCAATTGAGTCAGTTTC S F L G T P Q G - H Y P S T V N - V S F A F L A H L R D D T T Q V P S I E S V S - L S W H T S G M T L P K Y R Q L S Q F . . . . . . 31072 GGTAGTCCATGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAG G S P - V S G C V P C R S S W Y A T R - V V H E F L D V F P A D L P G M P P D R R - S M S F W M C S L Q I F L V C H Q I . . . . . . 31132 GGATATTGACTTCTACATTGATCTTGAACCGGGTATTGGCCCCATTTCTATACCCCCTTA G Y - L L H - S - T G Y W P H F Y T P L D I D F Y I D L E P G I G P I S I P P Y G I L T S T L I L N R V L A P F L Y P L . . . . . . 31192 TACAATAGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTGCAAGAGTTGTTGAGCAA Y N S S R G V K R V K G P T A R V V E Q T I A P A E L R E L K A Q L Q E L L S K I Q - L P R S - E S - R P N C K S C - A . . . . . . 31252 AGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAA R L H - T K C I P L G C S G F V C E E E G F I R P S A S P W G A P V L F V K K K K A S L D Q V H P L G V L R F C L - R R . . . . . . 31312 GGGTGGAAGTTTTAGGATGTGCATAGATTACAGACAACTAAATAAGGTAACGATTAAGAA G W K F - D V H R L Q T T K - G N D - E G G S F R M C I D Y R Q L N K V T I K N R V E V L G C A - I T D N - I R - R L R . . . . . . 31372 CAAGTATCCTCTTCCTCGCATTGATGATTTGTTCGATCAGTTACAAGGTGCTTGTACCTT Q V S S S S H - - F V R S V T R C L Y L K Y P L P R I D D L F D Q L Q G A C T F T S I L F L A L M I C S I S Y K V L V P . . . . . . 31432 CTCAAAAATCGACTTGAGATCTGGTTATCATCAATTGAAAATACGGGCAGCAGATGTGCC L K N R L E I W L S S I E N T G S R C A S K I D L R S G Y H Q L K I R A A D V P S Q K S T - D L V I I N - K Y G Q Q M C . . . . . . 31492 CAAGACTGCTTTTCGGACCAGGTATAGGCATTATGAGTTCTTAGTAATGTCTTTTAGGCT Q D C F S D Q V - A L - V L S N V F - A K T A F R T R Y R H Y E F L V M S F R L P R L L F G P G I G I M S S - - C L L G . . . . . . 31552 TACGAATGCCCCTGCTGCTTTCATGAGCTTGATGAATAGGATTTTTAAGCCATATCTGGA Y E C P C C F H E L D E - D F - A I S G T N A P A A F M S L M N R I F K P Y L D L R M P L L L S - A - - I G F L S H I W . . . . . . 31612 TCTCTTTGTGATCGTATTTATTGATGATATATTGGTATACTCAAAGAGCAAGAAGGAACA S L C D R I Y - - Y I G I L K E Q E G T L F V I V F I D D I L V Y S K S K K E H I S L - S Y L L M I Y W Y T Q R A R R N . . . . . . 31672 TGAGGAACACTTGAGAATGGTACTGAAAATGTTAAGGGAGAAGAAGCTCTATGCCAAATT - G T L E N G T E N V K G E E A L C Q I E E H L R M V L K M L R E K K L Y A K L M R N T - E W Y - K C - G R R S S M P N . . . . . . 31732 ATCCAAGTGTGAATTTTGGCTTGATTCAGTGTCCTTCTTGGGGCACGTGGTGTCTAAGGA I Q V - I L A - F S V L L G A R G V - G S K C E F W L D S V S F L G H V V S K E Y P S V N F G L I Q C P S W G T W C L R . . . . . . 31792 GGGCGTGATGGTGGATCCTTATAAGATTGAGACAGTGAAGAATTGGTTAAGACCTACTAA G R D G G S L - D - D S E E L V K T Y - G V M V D P Y K I E T V K N W L R P T N R A - W W I L I R L R Q - R I G - D L L . . . . . . 31852 TGTGTCAGAAATAAGGAGCTTTGTTGGTTTAGCTAGCTATTACCGTCGATTTGTCAAGGG C V R N K E L C W F S - L L P S I C Q G V S E I R S F V G L A S Y Y R R F V K G M C Q K - G A L L V - L A I T V D L S R . 31912 ATTC I F D Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1+_PGL-4_AGS-17_PPS_1 (30380 31915) (frame '2'; 1536 bp, 512 residues) 1 LEVEVVIEEV VILENVVAEV MMVTKPTGVA GKLAAVQHGW GNGQTGDRAH CYAFPGRSEA 61 ETSDVVITGN LLVCDCMASV LFDPGSTFSY VSSSFANGLN LHCELLDMPI RVSTPVGESV 121 IVEKVYRSGL VTFVGSNTHV DLVILEMVDF DVILGMTWLS PNFAILDCNA KTVTLAKPGT 181 DPLVWEGNYT SNPVRIISFL RAKRMVSKGC LAFLAHLRDD TTQVPSIESV SVVHEFLDVF 241 PADLPGMPPD RDIDFYIDLE PGIGPISIPP YTIAPAELRE LKAQLQELLS KGFIRPSASP 301 WGAPVLFVKK KGGSFRMCID YRQLNKVTIK NKYPLPRIDD LFDQLQGACT FSKIDLRSGY 361 HQLKIRAADV PKTAFRTRYR HYEFLVMSFR LTNAPAAFMS LMNRIFKPYL DLFVIVFIDD 421 ILVYSKSKKE HEEHLRMVLK MLREKKLYAK LSKCEFWLDS VSFLGHVVSK EGVMVDPYKI 481 ETVKNWLRPT NVSEIRSFVG LASYYRRFVK GF >C04HBa0077O05.1+_PGL-4_AGS-17_PPS_2 (29541 29987) (frame '0'; 444 bp, 148 residues) 1 IGTFPRLTTG PIMTNDQHEL FSKFLKLKPP VFKGAESEDA YDFLVEFHEL LHKMGIVERF 61 GVEFVTYQFQ GNAKMWWRSH VECQPTEAPP MTWASFSSLS MEKYIPRTLR DRKRDEFLSL 121 EQGKMSVTAY EAKFRELSRY ATQLCFSP- >C04HBa0077O05.1+_PGL-4_AGS-17_PPS_3 (29214 29540) (frame '0'; 324 bp, 108 residues) 1 AVARGRGRDR GRTSSRRRGR APSPSGTRAV TPPPTEEVVR EGEERENEQV QNEELPPQPT 61 PEMINQVLAY LSGLSDQGQT PPVFSAPAPQ APEVQHATTV APCMDASL- >C04HBa0077O05.1+_PGL-4_AGS-17_PPS_4 (30049 30264) (frame '1'; 213 bp, 71 residues) 1 VATTAKSFQE VVDFVIEVEG VKPDDFTMAS TSKSFRRGGE FNGSYSRGQG SGGYSVRPIQ 61 SSLQTVVGGP P- AGS-18 (31299 30818,30078 29903) SCR (e 0.923 d 0.000 a 0.000,e 0.892) Exon 1 31299 30818 ( 482 n); score: 0.923 Intron 1 30817 30079 ( 739 n); Pd: 0.000 Pa: 0.000 Exon 2 30078 29903 ( 176 n); score: 0.892 PGS (31299 30818,30078 29903) SGN-E353359+ 3-phase translation of AGS-18 (-strand): . . . . . . 31299 AACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAAC N K T G A P Q G D A L G L M K P L L N N T K P E H P K G M H L V - - S L C S T T Q N R S T P R G C T W S N E A F A Q Q . . . . . . 31239 TCTTGCAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCTATTGTATAAGGGGGTATA S C S W A F N S L N S A G A I V - G G I L A V G P L T L L T P R E L L Y K G V - L L Q L G L - L S - L R G S Y C I R G Y . . . . . . 31179 GAAATGGGGCCAATACCCGGTTCAAGATCAATGTAGAAGTCAATATCCCTATCTGGTGGC E M G P I P G S R S M - K S I S L S G G K W G Q Y P V Q D Q C R S Q Y P Y L V A R N G A N T R F K I N V E V N I P I W W . . . . . . 31119 ATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCATGGACTACCGAAACTGACTCA I P G R S A G N T S R N S W T T E T D S Y Q E D L Q G T H P E T H G L P K L T Q H T R K I C R E H I Q K L M D Y R N - L . . . . . . 31059 ATTGACGGTACTTGGGTAGTGTCATCCCTGAGGTGTGCCAAGAAAGCTAAACAACCCTTA I D G T W V V S S L R C A K K A K Q P L L T V L G - C H P - G V P R K L N N P Y N - R Y L G S V I P E V C Q E S - T T L . . . . . . 30999 CTAACCATTCTCTTAGCACGAAGAAAGGAGATGATACGAACCGGGTTGGAAGTGTAGTTA L T I L L A R R K E M I R T G L E V - L - P F S - H E E R R - Y E P G W K C S Y T N H S L S T K K G D D T N R V G S V V . . . . . . 30939 CCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAA P S H T N G S V P G L A N V T V L A L Q P P T L T D L S Q A W L T S Q F - H Y N T L P H - R I C P R L G - R H S F S I T . . . . . . 30879 TCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACC S K I A K F G E S Q V I P R I T S K S T P R L Q N L E K A K S Y P E L H R S Q P I Q D C K I W R K P S H T Q N Y I E V N . : . . . . . 30819 AT : TTCTTGAAAGGATTTTGCCGTAGTCGCTACCTATAAGGCTAAAAATCCGCAATTCTGA I : S - K D F A V V A T Y K A K N P Q F - : F L E R I L P - S L P I R L K I R N S D H : F L K G F C R S R Y L - G - K S A I L . . . . . . 30020 CCTCAACCCCTTCACAAAACGGCAAATCCGCTCTTATGGACTGAAACAAAGCTGAGTGGC P Q P L H K T A N P L L W T E T K L S G L N P F T K R Q I R S Y G L K Q S - V A T S T P S Q N G K S A L M D - N K A E W . . . . . . 29960 ATATCTGGAAAGTTCACGAAACTTAGCCTCATATGCAGTAACCGACATCTTACCTTGC I S G K F T K L S L I C S N R H L T L Y L E S S R N L A S Y A V T D I L P C H I W K V H E T - P H M Q - P T S Y L Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-4_AGS-18_PPS_1 (31143 30943) (frame '1'; 198 bp, 66 residues) 1 KSISLSGGIP GRSAGNTSRN SWTTETDSID GTWVVSSLRC AKKAKQPLLT ILLARRKEMI 61 RTGLEV- AGS-19 (30734 30705,30669 30144) SCR (e 0.633 d 0.799 a 0.000,e 0.847) Exon 1 30734 30705 ( 30 n); score: 0.633 Intron 1 30704 30670 ( 35 n); Pd: 0.799 Pa: 0.000 Exon 2 30669 30144 ( 526 n); score: 0.847 PGS (30734 30705,30669 30144) SGN-E577713+ 3-phase translation of AGS-19 (-strand): . . . : . . . 30734 ACTCACCCACCGGAGTAGAAACACGAATAG : TTAGCAAATGAGGAAGATACATAAGAAAAT T H P P E - K H E - : L A N E E D T - E N L T H R S R N T N S : - Q M R K I H K K M S P T G V E T R I : V S K - G R Y I R K . . . . . . 30639 GTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTG V D P G S N N T E A M Q S Q T K R L P V W I Q D Q T I Q K P C N H K P K D Y L - C G S R I K Q Y R S H A I T N Q K I T C . . . . . . 30579 ATAACAACATCAGATGTCTCCGCTTCAGACCGCCCAGGGAAGGCGTAACAATGGGCCCTA I T T S D V S A S D R P G K A - Q W A L - Q H Q M S P L Q T A Q G R R N N G P Y D N N I R C L R F R P P R E G V T M G P . . . . . . 30519 TCACCTGTTTGCCCGTTACCCCAACCATGCTGCACCGCAGCCAGTTTGCCCGCCACCCCG S P V C P L P Q P C C T A A S L P A T P H L F A R Y P N H A A P Q P V C P P P R I T C L P V T P T M L H R S Q F A R H P . . . . . . 30459 GTTGGTTTGGTGACCATCATTACCTCGGCCACCACGTTCTCCAGGATAACGACCTCTTCT V G L V T I I T S A T T F S R I T T S S L V W - P S L P R P P R S P G - R P L L G W F G D H H Y L G H H V L Q D N D L F . . . . . . 30399 ATGACCACCTCTACCTCTAACTATTGGAGGTCTGTAACTCTGTTTTGGACAATACCTCTT M T T S T S N Y W R S V T L F W T I P L - P P L P L T I G G L - L C F G Q Y L L Y D H L Y L - L L E V C N S V L D N T S . . . . . . 30339 AATGTGTCCAGTCTCCCCACATCCATAACACTCTCTGGATTTAAGCATAGGTCTCTCAGA N V S S L P T S I T L S G F K H R S L R M C P V S P H P - H S L D L S I G L S E - C V Q S P H I H N T L W I - A - V S Q . . . . . . 30279 GAAGTGTTGACCGGTCTAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGG E V L T G L R W T P N Y S L - - R L N W K C - P V - G G P P T T V C S E D - I G R S V D R S K V D P Q L Q S V V K T E L . . . . . . 30219 TCGGACTGAGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCC S D - V T S - T L S S R V R T I K L T S R T E - P P E P C P L E - E P L N S P P V G L S N L L N P V L - S K N H - T H L . . 30159 CCTTCGAAAACTTTTT P S K T F L R K L F P F E N F Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-4_AGS-19_PPS_1 (30531 30235) (frame '1'; 294 bp, 98 residues) 1 QWALSPVCPL PQPCCTAASL PATPVGLVTI ITSATTFSRI TTSSMTTSTS NYWRSVTLFW 61 TIPLNVSSLP TSITLSGFKH RSLREVLTGL RWTPNYSL- >C04HBa0077O05.1-_PGL-4_AGS-19_PPS_2 (30658 30380) (frame '0'; 276 bp, 92 residues) 1 GRYIRKCGSR IKQYRSHAIT NQKITCDNNI RCLRFRPPRE GVTMGPITCL PVTPTMLHRS 61 QFARHPGWFG DHHYLGHHVL QDNDLFYDHL YL- AGS-20 (33170 32143) SCR (e 0.889) Exon 1 33170 32143 (1028 n); score: 0.889 PGS (32729 32143) SGN-E352950+ PGS (32729 32143) SGN-E357100+ PGS (32729 32176) SGN-E352647+ PGS (33170 32633) SGN-E353207+ PGS (33140 32859) SGN-E578131+ 3-phase translation of AGS-20 (-strand): . . . . . . 33170 TCCGCATGCAATATTTTCCAAAACTTAGAAGTAAACATCGTTCCTCTATCTGATATGATG S A C N I F Q N L E V N I V P L S D M M P H A I F S K T - K - T S F L Y L I - W R M Q Y F P K L R S K H R S S I - Y D . . . . . . 33110 GAGAGTGGAACCCCATGCAATCGAACAATTTCTGAGATGTAAATTTTGGCTAACTTCTCT E S G T P C N R T I S E M - I L A N F S R V E P H A I E Q F L R C K F W L T S L G E W N P M Q S N N F - D V N F G - L L . . . . . . 33050 GCATTATAAGTCACCTTGACCGGAATGAAATGAACAGACTTAGTTAATCTGTCCACAATT A L - V T L T G M K - T D L V N L S T I H Y K S P - P E - N E Q T - L I C P Q L C I I S H L D R N E M N R L S - S V H N . . . . . . 32990 ACCCAAATAGAGTCAAACTTCCCCAATGTCTTTGGAAGACCAACCACGAAGTCCATTGCA T Q I E S N F P N V F G R P T T K S I A P K - S Q T S P M S L E D Q P R S P L Q Y P N R V K L P Q C L W K T N H E V H C . . . . . . 32930 ATTCTCTCCCACTTTCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCGGGCCTCTAG I L S H F H S G M G I L - S V P P G L - F S P T F I Q E W A F S E V F L R A S S N S L P L S F R N G H S L K C S S G P L . . . . . . 32870 TGTACTTTACTTGCTGACAATTTGGACATTTGGCAACAAAATCCACAATGTCGCGCTTCA C T L L A D N L D I W Q Q N P Q C R A S V L Y L L T I W T F G N K I H N V A L H V Y F T C - Q F G H L A T K S T M S R F . . . . . . 32810 TCCTACTCCACCAAAAGTGTTGCTTTAGGTCACGATACATCTTGGTTGCACCAGGATGTA S Y S T K S V A L G H D T S W L H Q D V P T P P K V L L - V T I H L G C T R M Y I L L H Q K C C F R S R Y I L V A P G C . . . . . . 32750 TAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAGATCATCGAAGCGGG - N T L N Y E P L S E - C - S D H R S G R I P - T M S L C Q N S V D Q I I E A G I E Y L E L - A S V R I V L I R S S K R . . . . . . 32690 GTACACATACCATTCCCTTGATTCTCAAAACACCTTTCTCATCGATTTGTGCTTCCTTAG V H I P F P - F S K H L S H R F V L P - Y T Y H S L D S Q N T F L I D L C F L S G T H T I P L I L K T P F S S I C A S L . . . . . . 32630 CCTCTCCTCGCAATACTTTATCTTGGATTCTGCTTAGTTTCTCATCCTCAAACTGTTTTT P L L A I L Y L G F C L V S H P Q T V F L S S Q Y F I L D S A - F L I L K L F F A S P R N T L S W I L L S F S S S N C F . . . . . . 32570 CCTTAATCTTGTCAAGAAAAGAAGATCTTGCCTCCACACAAGCCAACAATCCTCCCTTCT P - S C Q E K K I L P P H K P T I L P S L N L V K K R R S C L H T S Q Q S S L L S L I L S R K E D L A S T Q A N N P P F . . . . . . 32510 CATTTACTTCTAACCTCATCAAGTCGTTAGCCAGGGTCTGAACCTCTCTAGCCAATGGAC H L L L T S S S R - P G S E P L - P M D I Y F - P H Q V V S Q G L N L S S Q W T S F T S N L I K S L A R V - T S L A N G . . . . . . 32450 GTCTAGAAACTTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAGGCGT V - K L A S E L D F P C S L P F Y L R R S R N L Q V S - T S H A P C L S T - G V R L E T C K - A R L P M L P A F L L K A . . . . . . 32390 CTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATGTCGTAGTCCTTCAGTA L P Q H - P F P D D T R - - C R S P S V C H N I S L S R M I Q D S D V V V L Q - S A T T L A F P G - Y K I V M S - S F S . . . . . . 32330 GTTCCATCCATCTCCTCTGTCTCAAGTTCAAATCTTTCTGAGTAAAGACGTACTGTAGGC V P S I S S V S S S N L S E - R R T V G F H P S P L S Q V Q I F L S K D V L - A S S I H L L C L K F K S F - V K T Y C R . . . . . . 32270 TACGATGATCCGTGTAGACCTCACACTTAGCTCCATATAGATAATGTCTCCATTGCTTTA Y D D P C R P H T - L H I D N V S I A L T M I R V D L T L S S I - I M S P L L - L R - S V - T S H L A P Y R - C L H C F . . . . . . 32210 ATGCAAACACTACCGCAGCCAACTCCAAATCATGGGTCGGATAATTACGTTCGTGCACCT M Q T L P Q P T P N H G S D N Y V R A P C K H Y R S Q L Q I M G R I I T F V H L N A N T T A A N S K S W V G - L R S C T . 32150 TTAATTGC L I - L F N C Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-4_AGS-20_PPS_1 (32730 32470) (frame '0'; 258 bp, 86 residues) 1 ASVRIVLIRS SKRGTHTIPL ILKTPFSSIC ASLASPRNTL SWILLSFSSS NCFSLILSRK 61 EDLASTQANN PPFSFTSNLI KSLARV- >C04HBa0077O05.1-_PGL-4_AGS-20_PPS_2 (32980 32783) (frame '2'; 195 bp, 65 residues) 1 SQTSPMSLED QPRSPLQFSP TFIQEWAFSE VFLRASSVLY LLTIWTFGNK IHNVALHPTP 61 PKVLL- 3-phase translation of AGS-20 (+strand): . . . . . . 32143 GCAATTAAAGGTGCACGAACGTAATTATCCGACCCATGATTTGGAGTTGGCTGCGGTAGT A I K G A R T - L S D P - F G V G C G S Q L K V H E R N Y P T H D L E L A A V V N - R C T N V I I R P M I W S W L R - . . . . . . 32203 GTTTGCATTAAAGCAATGGAGACATTATCTATATGGAGCTAAGTGTGAGGTCTACACGGA V C I K A M E T L S I W S - V - G L H G F A L K Q W R H Y L Y G A K C E V Y T D C L H - S N G D I I Y M E L S V R S T R . . . . . . 32263 TCATCGTAGCCTACAGTACGTCTTTACTCAGAAAGATTTGAACTTGAGACAGAGGAGATG S S - P T V R L Y S E R F E L E T E E M H R S L Q Y V F T Q K D L N L R Q R R W I I V A Y S T S L L R K I - T - D R G D . . . . . . 32323 GATGGAACTACTGAAGGACTACGACATCACTATCTTGTATCATCCGGGAAAGGCTAATGT D G T T E G L R H H Y L V S S G K G - C M E L L K D Y D I T I L Y H P G K A N V G W N Y - R T T T S L S C I I R E R L M . . . . . . 32383 TGTGGCAGACGCCTTAAGTAGAAAGGCAGGGAGCATGGGAAGTCTAGCTCACTTGCAAGT C G R R L K - K G R E H G K S S S L A S V A D A L S R K A G S M G S L A H L Q V L W Q T P - V E R Q G A W E V - L T C K . . . . . . 32443 TTCTAGACGTCCATTGGCTAGAGAGGTTCAGACCCTGGCTAACGACTTGATGAGGTTAGA F - T S I G - R G S D P G - R L D E V R S R R P L A R E V Q T L A N D L M R L E F L D V H W L E R F R P W L T T - - G - . . . . . . 32503 AGTAAATGAGAAGGGAGGATTGTTGGCTTGTGTGGAGGCAAGATCTTCTTTTCTTGACAA S K - E G R I V G L C G G K I F F S - Q V N E K G G L L A C V E A R S S F L D K K - M R R E D C W L V W R Q D L L F L T . . . . . . 32563 GATTAAGGAAAAACAGTTTGAGGATGAGAAACTAAGCAGAATCCAAGATAAAGTATTGCG D - G K T V - G - E T K Q N P R - S I A I K E K Q F E D E K L S R I Q D K V L R R L R K N S L R M R N - A E S K I K Y C . . . . . . 32623 AGGAGAGGCTAAGGAAGCACAAATCGATGAGAAAGGTGTTTTGAGAATCAAGGGAATGGT R R G - G S T N R - E R C F E N Q G N G G E A K E A Q I D E K G V L R I K G M V E E R L R K H K S M R K V F - E S R E W . . . . . . 32683 ATGTGTACCCCGCTTCGATGATCTGATCAACACTATTCTGACAGAGGCTCATAGTTCAAG M C T P L R - S D Q H Y S D R G S - F K C V P R F D D L I N T I L T E A H S S R Y V Y P A S M I - S T L F - Q R L I V Q . . . . . . 32743 GTATTCTATACATCCTGGTGCAACCAAGATGTATCGTGACCTAAAGCAACACTTTTGGTG V F Y T S W C N Q D V S - P K A T L L V Y S I H P G A T K M Y R D L K Q H F W W G I L Y I L V Q P R C I V T - S N T F G . . . . . . 32803 GAGTAGGATGAAGCGCGACATTGTGGATTTTGTTGCCAAATGTCCAAATTGTCAGCAAGT E - D E A R H C G F C C Q M S K L S A S S R M K R D I V D F V A K C P N C Q Q V G V G - S A T L W I L L P N V Q I V S K . . . . . . 32863 AAAGTACACTAGAGGCCCGGAGGAACACTTCAGAGAATGCCCATTCCTGAATGAAAGTGG K V H - R P G G T L Q R M P I P E - K W K Y T R G P E E H F R E C P F L N E S G - S T L E A R R N T S E N A H S - M K V . . . . . . 32923 GAGAGAATTGCAATGGACTTCGTGGTTGGTCTTCCAAAGACATTGGGGAAGTTTGACTCT E R I A M D F V V G L P K T L G K F D S R E L Q W T S W L V F Q R H W G S L T L G E N C N G L R G W S S K D I G E V - L . . . . . . 32983 ATTTGGGTAATTGTGGACAGATTAACTAAGTCTGTTCATTTCATTCCGGTCAAGGTGACT I W V I V D R L T K S V H F I P V K V T F G - L W T D - L S L F I S F R S R - L Y L G N C G Q I N - V C S F H S G Q G D . . . . . . 33043 TATAATGCAGAGAAGTTAGCCAAAATTTACATCTCAGAAATTGTTCGATTGCATGGGGTT Y N A E K L A K I Y I S E I V R L H G V I M Q R S - P K F T S Q K L F D C M G F L - C R E V S Q N L H L R N C S I A W G . . . . . . 33103 CCACTCTCCATCATATCAGATAGAGGAACGATGTTTACTTCTAAGTTTTGGAAAATATTG P L S I I S D R G T M F T S K F W K I L H S P S Y Q I E E R C L L L S F G K Y C S T L H H I R - R N D V Y F - V L E N I . 33163 CATGCGGA H A M R A C G Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1+_PGL-4_AGS-20_PPS_1 (32144 32992) (frame '2'; 846 bp, 282 residues) 1 QLKVHERNYP THDLELAAVV FALKQWRHYL YGAKCEVYTD HRSLQYVFTQ KDLNLRQRRW 61 MELLKDYDIT ILYHPGKANV VADALSRKAG SMGSLAHLQV SRRPLAREVQ TLANDLMRLE 121 VNEKGGLLAC VEARSSFLDK IKEKQFEDEK LSRIQDKVLR GEAKEAQIDE KGVLRIKGMV 181 CVPRFDDLIN TILTEAHSSR YSIHPGATKM YRDLKQHFWW SRMKRDIVDF VAKCPNCQQV 241 KYTRGPEEHF RECPFLNESG RELQWTSWLV FQRHWGSLTL FG- AGS-21 (35960 35188,35153 34909,33619 33587,33475 33449) SCR (e 0.864 d 0.000 a 0.000,e 0.743 d 0.045 a 0.000,e 0.636 d 0.635 a 0.000,e 0.741) Exon 1 35960 35188 ( 773 n); score: 0.864 Intron 1 35187 35154 ( 34 n); Pd: 0.000 Pa: 0.000 Exon 2 35153 34909 ( 245 n); score: 0.743 Intron 2 34908 33620 (1289 n); Pd: 0.045 Pa: 0.000 Exon 3 33619 33587 ( 33 n); score: 0.636 Intron 3 33586 33476 ( 111 n); Pd: 0.635 Pa: 0.000 Exon 4 33475 33449 ( 27 n); score: 0.741 PGS (35485 35188,35153 34909,33619 33587,33475 33449) SGN-E349977- PGS (35640 35237) SGN-E246710- PGS (35541 35307) SGN-E209683- PGS (35950 35467) SGN-E356206- PGS (35950 35467) SGN-E351546- PGS (35950 35467) SGN-E356696- PGS (35827 35538) SGN-E222578+ PGS (35954 35547) SGN-E392027+ PGS (35960 35548) SGN-E542084+ PGS (35956 35548) SGN-E370357+ PGS (35794 35548) SGN-E336814- PGS (35813 35551) SGN-E373117- PGS (35804 35551) SGN-E373116+ PGS (35813 35595) SGN-E298638- PGS (35794 35622) SGN-E352844- PGS (35794 35622) SGN-E368629- PGS (35787 35622) SGN-E238551- 3-phase translation of AGS-21 (-strand): . . . . . . 35960 TATAAATGTCACGATCCAAATCGGGTCGCGACTGACACCCACACTTACCCTCCTATGTGA Y K C H D P N R V A T D T H T Y P P M - I N V T I Q I G S R L T P T L T L L C E - M S R S K S G R D - H P H L P S Y V . . . . . . 35900 GCGAACCAACCAATCTAAACCTTAACATTTCAATATAATATCAACAGAAAGTAATGCGGA A N Q P I - T L T F Q Y N I N R K - C G R T N Q S K P - H F N I I S T E S N A E S E P T N L N L N I S I - Y Q Q K V M R . . . . . . 35840 AGACTTAAACTCATTAATAAAAACCAATTCAATAACTTCTAAAAACTCAACAACTATTAT R L K L I N K N Q F N N F - K L N N Y Y D L N S L I K T N S I T S K N S T T I I K T - T H - - K P I Q - L L K T Q Q L L . . . . . . 35780 TATCCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACTTCAAATTACTAAATCTAA Y P Q N L E V I I T R T S T S N Y - I - I P K I W K S S S Q E H L L Q I T K S K L S P K S G S H H H K N I Y F K L L N L . . . . . . 35720 GAGTATCTAAGAAGCTAAAATACATAAACAGCTAGTCCATGCCGGAACATCAAGGCATCA E Y L R S - N T - T A S P C R N I K A S S I - E A K I H K Q L V H A G T S R H Q R V S K K L K Y I N S - S M P E H Q G I . . . . . . 35660 AGACATGAAGAAGAAGATCCAGTCCAAGCTAGAAGCTTTAGCTCACCCTGAAATCTGGTG R H E E E D P V Q A R S F S S P - N L V D M K K K I Q S K L E A L A H P E I W C K T - R R R S S P S - K L - L T L K S G . . . . . . 35600 TGATGAAGACTGGCTAGAGTTGCGGTTGGATTGAAGACGACGATACGTTTGCTGCACTCC - - R L A R V A V G L K T T I R L L H S D E D W L E L R L D - R R R Y V C C T P V M K T G - S C G W I E D D D T F A A L . . . . . . 35540 ACAATGAACAAAAAGAAAACATACAAGTAGGGGTCAGTAGAAAACACGAGTACTGAGTAG T M N K K K T Y K - G S V E N T S T E - Q - T K R K H T S R G Q - K T R V L S R H N E Q K E N I Q V G V S R K H E Y - V . . . . . . 35480 ATATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATATCATAAAATCAAC I S S A N S K - K T V Y I R - Y H K I N Y H R P T Q N R K Q Y I S D N I I K S T D I I G Q L K I E N S I Y Q I I S - N Q . . . . . . 35420 TACAGTACTTAACATGCAACATTTACAATTACCATAACCCTTGGTCATAACACCAATCTC Y S T - H A T F T I T I T L G H N T N L T V L N M Q H L Q L P - P L V I T P I S L Q Y L T C N I Y N Y H N P W S - H Q S . . . . . . 35360 ATCAATGAGGACTCACGCCTCCCCATCATACTCATTTGAGAATTAGGTTCATTAAATTAA I N E D S R L P I I L I - E L G S L N - S M R T H A S P S Y S F E N - V H - I K H Q - G L T P P H H T H L R I R F I K L . . . . . . 35300 GTATATTAACATATTTCAAGATTCATTCTCTTTACTAATCCTGGTGCCGGAACGTGACAC V Y - H I S R F I L F T N P G A G T - H Y I N I F Q D S F S L L I L V P E R D T S I L T Y F K I H S L Y - S W C R N V T . . . . . . : 35240 TCCGATCCTCATATACTATCCTGGTACCGGACGTGGCACCCGATCCATATACT : TATACTA S D P H I L S W Y R T W H P I H I L : I L P I L I Y Y P G T G R G T R S I Y : L Y Y L R S S Y T I L V P D V A P D P Y T : Y T . . . . . . 35146 TCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGACACC S W Y R N V A P D P Y T I L V S E R D T P G T G T W H P I H I L S W C R N V T P I L V P E R G T R S I Y Y P G V G T - H . . . . . . 35086 CGATCCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCACATACTATCCTGG R S I Y Y P G V G T - H S D P H I L S W D P Y T I L V S E R D T P I L T Y Y P G P I H I L S W C R N V T L R S S H T I L . . . . . . 35026 TACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGAAACGTGACACTCCGATC Y R N V A P D P Y T I L V S K R D T P I T G T W H P I H I L S W C R N V T L R S V P E R G T R S I Y Y P G V E T - H S D . . . . . . : 34966 CTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTC : CT L I Y Y P G T G T W H P I P - S H Y F : P S Y T I L V P E R G T R S P N L T T F : L P H I L S W Y R N V A P D P L I S L L S : . . . . : . . 33617 CTTTTACCAAAACGCATCACCCCTTTCATAG : ATTTCACTTTATCTAACGATTCTCTCA L L P K R I T P F I : D F T L S N D S L F Y Q N A S P L S - : I S L Y L T I L S S F T K T H H P F H R : F H F I - R F S Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-4_AGS-21_PPS_1 (35305 35188,35153 34909,33619 33587) (frame '2'; 393 bp, 131 residues) 1 IKYINIFQDS FSLLILVPER DTPILIYYPG TGRGTRSIYL YYPGTGTWHP IHILSWCRNV 61 TPDPYTILVS ERDTPILTYY PGTGTWHPIH ILSWCRNVTL RSSYTILVPE RGTRSPNLTT 121 FLFYQNASPL S- AGS-22 (35451 35264,35186 33453) SCR (e 0.814 d 0.000 a 0.000,e 0.917) Exon 1 35451 35264 ( 188 n); score: 0.814 Intron 1 35263 35187 ( 77 n); Pd: 0.000 Pa: 0.000 Exon 2 35186 33453 (1734 n); score: 0.917 PGS (34215 33453) SGN-E354383- PGS (34271 33796) SGN-E252199- PGS (34625 34051) SGN-E550127- PGS (34625 34051) SGN-E550140- PGS (34625 34051) SGN-E389553- PGS (34625 34051) SGN-E396039+ PGS (34625 34051) SGN-E396054+ PGS (34625 34051) SGN-E396056+ PGS (34625 34051) SGN-E396058+ PGS (34625 34051) SGN-E377133+ PGS (34625 34051) SGN-E550212+ PGS (34625 34051) SGN-E550065+ PGS (34625 34051) SGN-E550201+ PGS (34625 34051) SGN-E550207+ PGS (34625 34051) SGN-E550335+ PGS (34625 34051) SGN-E390013+ PGS (34625 34051) SGN-E389834+ PGS (34625 34051) SGN-E550484+ PGS (34625 34051) SGN-E550211+ PGS (34625 34051) SGN-E550464+ PGS (34625 34051) SGN-E549941+ PGS (34625 34051) SGN-E550025+ PGS (34625 34051) SGN-E231589+ PGS (34625 34051) SGN-E374999+ PGS (34614 34051) SGN-E550322+ PGS (34589 34051) SGN-E396057- PGS (34573 34051) SGN-E377132- PGS (34557 34051) SGN-E396055- PGS (34555 34051) SGN-E398551- PGS (34545 34051) SGN-E396038- PGS (34439 34051) SGN-E396069- PGS (34433 34051) SGN-E374998- PGS (34625 34061) SGN-E241959+ PGS (34633 34097) SGN-E349296- PGS (34625 34252) SGN-E396070+ PGS (34625 34252) SGN-E236652+ PGS (34579 34255) SGN-E356257- PGS (34511 34284) SGN-E396037+ PGS (34923 34581) SGN-E347579- PGS (35451 35264,35186 34855) SGN-E242359- 3-phase translation of AGS-22 (-strand): . . . . . . 35451 AGTATATATCAGATAATATCATAAAATCAACTACAGTACTTAACATGCAACATTTACAAT S I Y Q I I S - N Q L Q Y L T C N I Y N V Y I R - Y H K I N Y S T - H A T F T I Y I S D N I I K S T T V L N M Q H L Q . . . . . . 35391 TACCATAACCCTTGGTCATAACACCAATCTCATCAATGAGGACTCACGCCTCCCCATCAT Y H N P W S - H Q S H Q - G L T P P H H T I T L G H N T N L I N E D S R L P I I L P - P L V I T P I S S M R T H A S P S . . . . . . 35331 ACTCATTTGAGAATTAGGTTCATTAAATTAAGTATATTAACATATTTCAAGATTCATTCT T H L R I R F I K L S I L T Y F K I H S L I - E L G S L N - V Y - H I S R F I L Y S F E N - V H - I K Y I N I F Q D S F . : . . . . . 35271 CTTTACTA : TCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGG L Y Y : P G V G T - H S D P H I L S W Y R F T : I L V S E R D T P I L I Y Y P G T G S L L : S W C R N V T L R S S Y T I L V P . . . . . . 35134 AACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGACACCCGATCCATATAC N V A P D P Y T I L V S E R D T R S I Y T W H P I H I L S W C R N V T P D P Y T E R G T R S I Y Y P G V G T - H P I H I . . . . . . 35074 TATCCTGGTGTCGGAACGTGACACTCCGATCCTCACATACTATCCTGGTACCGGAACGTG Y P G V G T - H S D P H I L S W Y R N V I L V S E R D T P I L T Y Y P G T G T W L S W C R N V T L R S S H T I L V P E R . . . . . . 35014 GCACCCGATCCATATACTATCCTGGTGTCGAAACGTGACACTCCGATCCTCATATACTAT A P D P Y T I L V S K R D T P I L I Y Y H P I H I L S W C R N V T L R S S Y T I G T R S I Y Y P G V E T - H S D P H I L . . . . . . 34954 CCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTTCATCAAGCCTT P G T G T W H P I P - S H Y F R S S S L L V P E R G T R S P N L T T F V H Q A F S W Y R N V A P D P L I S L L S F I K P . . . . . . 34894 CTTTTATACCAAGACATCATCATTAACAAAGTAGATTAGGGCTTTTCAAGATTTAGGATT L L Y Q D I I I N K V D - G F S R F R I F Y T K T S S L T K - I R A F Q D L G F S F I P R H H H - Q S R L G L F K I - D . . . . . . 34834 CAATAGCTTCATCATGCTTATTCATCACAATTATATAATCGCATCATGTAAGCATACAAT Q - L H H A Y S S Q L Y N R I M - A Y N N S F I M L I H H N Y I I A S C K H T I S I A S S C L F I T I I - S H H V S I Q . . . . . . 34774 TAATCACATAGAAGGGTTTACAACACTACCCAATACATATCATTCGCTATTAAGAGTTTA - S H R R V Y N T T Q Y I S F A I K S L N H I E G F T T L P N T Y H S L L R V Y L I T - K G L Q H Y P I H I I R Y - E F . . . . . . 34714 CTACGAATAGTATAAAAACCATAACCTACCTCCACCGAAGATTAGTGATCAAGCAAGCAA L R I V - K P - P T S T E D - - S S K Q Y E - Y K N H N L P P P K I S D Q A S K T T N S I K T I T Y L H R R L V I K Q A . . . . . . 34654 ATTCCCCAAAGCTTTGTGTTTTCCTCTTCTCGTTCGATCCTCTCTCTCTCTTTGTTCTTT I P Q S F V F S S S R S I L S L S L F F F P K A L C F P L L V R S S L S L C S F N S P K L C V F L F S F D P L S L F V L . . . . . . 34594 CTATTTTCTTTATTCAAACCCTCTTTCTTTTACCCTAATTAGCATATAATTAAGAATAAA L F S L F K P S F F Y P N - H I I K N K Y F L Y S N P L S F T L I S I - L R I K S I F F I Q T L F L L P - L A Y N - E - . . . . . . 34534 AGATGGCAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAAGTAATT R W Q - - P T N L L K V T S F N P Q V I D G N N N P L I Y S R L P L L T P K - L K M A I I T H - F T Q G Y L F - P P S N . . . . . . 34474 AGACTTATTAACATTAACCCACTAACTTTATAATTAAAACAGGAATAGTCAAAAACTTCC R L I N I N P L T L - L K Q E - S K T S D L L T L T H - L Y N - N R N S Q K L P - T Y - H - P T N F I I K T G I V K N F . . . . . . 34414 TTTAAAACATTAAAGAAATCCGACTCAGCCTGGGATTACGCAGCCTGTGACGGCCTGTCA F K T L K K S D S A W D Y A A C D G L S L K H - R N P T Q P G I T Q P V T A C H L - N I K E I R L S L G L R S L - R P V . . . . . . 34354 TGCCTGCGACGGTCCGTCCTGCTGCTCCGTCACAGAGTTCAGAGACTCAATTCCTTTAAA C L R R S V L L L R H R V Q R L N S F K A C D G P S C C S V T E F R D S I P L K M P A T V R P A A P S Q S S E T Q F L - . . . . . . 34294 GAGTTTGTGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGCCTGTGACGGTCCATCCTG E F V T V R H A C D G P S C L - R S I L S L - R S V T P V T V R P A C D G P S C R V C D G P S R L - R S V L P V T V H P . . . . . . 34234 CCATTCCGTTACGAAGTTCAGAGAGTCGATTTCAGTACCCATTTTTCAGAATTTTAAAGT P F R Y E V Q R V D F S T H F S E F - S H S V T K F R E S I S V P I F Q N F K V A I P L R S S E S R F Q Y P F F R I L K . . . . . . 34174 GTTTTGAAACGAGACCCCCTCGACGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGATCC V L K R D P L D G P S C P - R S V V G S F - N E T P S T V R R A H D G P S W D P C F E T R P P R R S V V P M T V R R G I . . . . . . 34114 GTCGTCTCAGCCAGTTTTCCAGAAATAACATCTCTTGCTCAAAACGACTAAACAGGTCGT V V S A S F P E I T S L A Q N D - T G R S S Q P V F Q K - H L L L K T T K Q V V R R L S Q F S R N N I S C S K R L N R S . . . . . . 34054 TACAATAGATACCAATTTACCCATCGTTCGTCCTCGAACGATCATAAGAAGAAAAACAAG Y N R Y Q F T H R S S S N D H K K K N K T I D T N L P I V R P R T I I R R K T R L Q - I P I Y P S F V L E R S - E E K Q . . . . . . 33994 GGTGAAAAGAAGTACCTGAATCTGTAAACAGGTGTGGGTATCTTTCTTGCATATCAGCCT G E K K Y L N L - T G V G I F L A Y Q P V K R S T - I C K Q V W V S F L H I S L G - K E V P E S V N R C G Y L S C I S A . . . . . . 33934 CTTTCTTCCAAGTGGCTTCTTCAACGGGTCGATTCTTCCATTGAACTTTGATGGATGCAA L S S K W L L Q R V D S S I E L - W M Q F L P S G F F N G S I L P L N F D G C N S F F Q V A S S T G R F F H - T L M D A . . . . . . 33874 TCTCCCTTGACCTCAGCTTGCGAACTTCTCTATCTAAAATGGCAACAGGCTCCTCCTCAT S P L T S A C E L L Y L K W Q Q A P P H L P - P Q L A N F S I - N G N R L L L I I S L D L S L R T S L S K M A T G S S S . . . . . . 33814 AAGACAAATTTTCATCAAGCAGAACTGAATCCCAACGAATGATGTAGTTTCCATCCCTAT K T N F H Q A E L N P N E - C S F H P Y R Q I F I K Q N - I P T N D V V S I P M - D K F S S S R T E S Q R M M - F P S L . . . . . . 33754 GGTATCTTTTCAACATAGACACGTGAAATACCGGATGCACTCCGGACAGCCCTGGAGGCA G I F S T - T R E I P D A L R T A L E A V S F Q H R H V K Y R M H S G Q P W R Q W Y L F N I D T - N T G C T P D S P G G . . . . . . 33694 AGGCTAACTCATAAGCCACCTCCCCTACTCGCTTAAGTACTTCAAAGGGACCAATATACC R L T H K P P P L L A - V L Q R D Q Y T G - L I S H L P Y S L K Y F K G T N I P K A N S - A T S P T R L S T S K G P I Y . . . . . . 33634 TTGGGCTTAATTTACCTCTTTTACCAAAACGCATCACCCCTTTCATAGGTGAAACCTTCA L G L I Y L F Y Q N A S P L S - V K P S W A - F T S F T K T H H P F H R - N L Q L G L N L P L L P K R I T P F I G E T F . . . . . . 33574 GCAAGACTTGTTCACCCTCCATGAACTCCAAGTCTCTAACCTTTCGATCTGCATATTCCT A R L V H P P - T P S L - P F D L H I P Q D L F T L H E L Q V S N L S I C I F L S K T C S P S M N S K S L T F R S A Y S . . . . . . 33514 TTTGCCTACTTTGCGCCGCTAACAGCTTTTCTTGAATAGATTTCACTTTATCTAACGATT F A Y F A P L T A F L E - I S L Y L T I L P T L R R - Q L F L N R F H F I - R F F C L L C A A N S F S - I D F T L S N D . 33454 CT S Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-4_AGS-22_PPS_1 (35291 35264,35186 34861) (frame '2'; 351 bp, 117 residues) 1 HISRFILFTI LVSERDTPIL IYYPGTGTWH PIHILSWCRN VTPDPYTILV SERDTPILTY 61 YPGTGTWHPI HILSWCRNVT LRSSYTILVP ERGTRSPNLT TFVHQAFFYT KTSSLTK- >C04HBa0077O05.1-_PGL-4_AGS-22_PPS_2 (34265 34047) (frame '0'; 216 bp, 72 residues) 1 RSVLPVTVHP AIPLRSSESR FQYPFFRILK CFETRPPRRS VVPMTVRRGI RRLSQFSRNN 61 ISCSKRLNRS LQ- >C04HBa0077O05.1-_PGL-4_AGS-22_PPS_3 (33680 33480) (frame '0'; 198 bp, 66 residues) 1 ATSPTRLSTS KGPIYLGLNL PLLPKRITPF IGETFSKTCS PSMNSKSLTF RSAYSFCLLC 61 AANSFS- AGS-23 (35682 35058,34940 34866) SCR (e 0.807 d 0.000 a 0.000,e 0.920) Exon 1 35682 35058 ( 625 n); score: 0.807 Intron 1 35057 34941 ( 117 n); Pd: 0.000 Pa: 0.000 Exon 2 34940 34866 ( 75 n); score: 0.920 PGS (35682 35058,34940 34866) SGN-E241789+ PGS (35218 35118) SGN-E546548- 3-phase translation of AGS-23 (-strand): . . . . . . 35682 ATGCCGGAACATCAAGGCATCAAGACATGAAGAAGAAGATCCAGTCCAAGCTAGAAGCTT M P E H Q G I K T - R R R S S P S - K L C R N I K A S R H E E E D P V Q A R S F A G T S R H Q D M K K K I Q S K L E A . . . . . . 35622 TAGCTCACCCTGAAATCTGGTGTGATGAAGACTGGCTAGAGTTGCGGTTGGATTGAAGAC - L T L K S G V M K T G - S C G W I E D S S P - N L V - - R L A R V A V G L K T L A H P E I W C D E D W L E L R L D - R . . . . . . 35562 GACGATACGTTTGCTGCACTCCACAATGAACAAAAAGAAAACATACAAGTAGGGGTCAGT D D T F A A L H N E Q K E N I Q V G V S T I R L L H S T M N K K K T Y K - G S V R R Y V C C T P Q - T K R K H T S R G Q . . . . . . 35502 AGAAAACACGAGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATATAT R K H E Y - V D I I G Q L K I E N S I Y E N T S T E - I S S A N S K - K T V Y I - K T R V L S R Y H R P T Q N R K Q Y I . . . . . . 35442 CAGATAATATCATAAAATCAACTACAGTACTTAACATGCAACATTTACAATTACCATAAC Q I I S - N Q L Q Y L T C N I Y N Y H N R - Y H K I N Y S T - H A T F T I T I T S D N I I K S T T V L N M Q H L Q L P - . . . . . . 35382 CCTTGGTCATAACACCAATCTCATCAATGAGGACTCACGCCTCCCCATCATACTCATTTG P W S - H Q S H Q - G L T P P H H T H L L G H N T N L I N E D S R L P I I L I - P L V I T P I S S M R T H A S P S Y S F . . . . . . 35322 AGAATTAGGTTCATTAAATTAAGTATATTAACATATTTCAAGATTCATTCTCTTTACTAA R I R F I K L S I L T Y F K I H S L Y - E L G S L N - V Y - H I S R F I L F T N E N - V H - I K Y I N I F Q D S F S L L . . . . . . 35262 TCCTGGTGCCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGACGTGGCA S W C R N V T L R S S Y T I L V P D V A P G A G T - H S D P H I L S W Y R T W H I L V P E R D T P I L I Y Y P G T G R G . . . . . . 35202 CCCGATCCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCT P D P Y T I L V S E R D T P I L I Y Y P P I H I L S W C R N V T L R S S Y T I L T R S I Y Y P G V G T - H S D P H I L S . . . . . . 35142 GGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGACACCCGAT G T G T W H P I H I L S W C R N V T P D V P E R G T R S I Y Y P G V G T - H P I W Y R N V A P D P Y T I L V S E R D T R . . . : . . . 35082 CCATATACTATCCTGGTGTCGGAAC : GTGGCACCCGATCCCCTAATCTCACTACTTTCGTT P Y T I L V S E : R G T R S P N L T T F V H I L S W C R N : V A P D P L I S L L S F S I Y Y P G V G T : W H P I P - S H Y F R . . . . 34905 CATCAAGCCTTCTTTTATACCAAGACATCATCATTAACAA H Q A F F Y T K T S S L T I K P S F I P R H H H - Q S S S L L L Y Q D I I I N Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-4_AGS-23_PPS_1 (35262 35058,34940 34867) (frame '1'; 279 bp, 93 residues) 1 SWCRNVTLRS SYTILVPDVA PDPYTILVSE RDTPILIYYP GTGTWHPIHI LSWCRNVTPD 61 PYTILVSERG TRSPNLTTFV HQAFFYTKTS SLT AGS-24 (36555 36521,35789 35227,35077 34941) SCR (e 0.714 d 0.000 a 0.000,e 0.793 d 0.000 a 0.000,e 0.927) Exon 1 36555 36521 ( 35 n); score: 0.714 Intron 1 36520 35790 ( 731 n); Pd: 0.000 Pa: 0.000 Exon 2 35789 35227 ( 563 n); score: 0.793 Intron 2 35226 35078 ( 149 n); Pd: 0.000 Pa: 0.000 Exon 3 35077 34941 ( 137 n); score: 0.927 PGS (36555 36521,35789 35227,35077 34941) SGN-E546506+ 3-phase translation of AGS-24 (-strand): . . . . : . . 36555 TTTTTTTTTTTGTGTTAGTTATGTCAATGTAACAC : AACTATTATTATCCCCAAAATCTGG F F F L C - L C Q C N T : T I I I P K I W F F F C V S Y V N V T : Q L L L S P K S G F F F V L V M S M - H : N Y Y Y P Q N L . . . . . . 35764 AAGTCATCATCACAAGAACATCTACTTCAAATTACTAAATCTAAGAGTATCTAAGAAGCT K S S S Q E H L L Q I T K S K S I - E A S H H H K N I Y F K L L N L R V S K K L E V I I T R T S T S N Y - I - E Y L R S . . . . . . 35704 AAAATACATAAACAGCTAGTCCATGCCGGAACATCAAGGCATCAAGACATGAAGAAGAAG K I H K Q L V H A G T S R H Q D M K K K K Y I N S - S M P E H Q G I K T - R R R - N T - T A S P C R N I K A S R H E E E . . . . . . 35644 ATCCAGTCCAAGCTAGAAGCTTTAGCTCACCCTGAAATCTGGTGTGATGAAGACTGGCTA I Q S K L E A L A H P E I W C D E D W L S S P S - K L - L T L K S G V M K T G - D P V Q A R S F S S P - N L V - - R L A . . . . . . 35584 GAGTTGCGGTTGGATTGAAGACGACGATACGTTTGCTGCACTCCACAATGAACAAAAAGA E L R L D - R R R Y V C C T P Q - T K R S C G W I E D D D T F A A L H N E Q K E R V A V G L K T T I R L L H S T M N K K . . . . . . 35524 AAACATACAAGTAGGGGTCAGTAGAAAACACGAGTACTGAGTAGATATCATCGGCCAACT K H T S R G Q - K T R V L S R Y H R P T N I Q V G V S R K H E Y - V D I I G Q L K T Y K - G S V E N T S T E - I S S A N . . . . . . 35464 CAAAATAGAAAACAGTATATATCAGATAATATCATAAAATCAACTACAGTACTTAACATG Q N R K Q Y I S D N I I K S T T V L N M K I E N S I Y Q I I S - N Q L Q Y L T C S K - K T V Y I R - Y H K I N Y S T - H . . . . . . 35404 CAACATTTACAATTACCATAACCCTTGGTCATAACACCAATCTCATCAATGAGGACTCAC Q H L Q L P - P L V I T P I S S M R T H N I Y N Y H N P W S - H Q S H Q - G L T A T F T I T I T L G H N T N L I N E D S . . . . . . 35344 GCCTCCCCATCATACTCATTTGAGAATTAGGTTCATTAAATTAAGTATATTAACATATTT A S P S Y S F E N - V H - I K Y I N I F P P H H T H L R I R F I K L S I L T Y F R L P I I L I - E L G S L N - V Y - H I . . . . . . : 35284 CAAGATTCATTCTCTTTACTAATCCTGGTGCCGGAACGTGACACTCCGATCCTCATAT : TA Q D S F S L L I L V P E R D T P I L I : L K I H S L Y - S W C R N V T L R S S Y : Y S R F I L F T N P G A G T - H S D P H I : . . . . . . 35075 CTATCCTGGTGTCGGAACGTGACACTCCGATCCTCACATACTATCCTGGTACCGGAACGT L S W C R N V T L R S S H T I L V P E R Y P G V G T - H S D P H I L S W Y R N V T I L V S E R D T P I L T Y Y P G T G T . . . . . . 35015 GGCACCCGATCCATATACTATCCTGGTGTCGAAACGTGACACTCCGATCCTCATATACTA G T R S I Y Y P G V E T - H S D P H I L A P D P Y T I L V S K R D T P I L I Y Y W H P I H I L S W C R N V T L R S S Y T . . 34955 TCCTGGTACCGGAAC S W Y R N P G T G I L V P E Maximal non-overlapping open reading frames (>= 64 codons): none PGL 5 (- strand): 52064 47488 AGS-1 (51948 51714,51136 51089,50871 50607,50492 50420,49421 49341,49254 49191,48630 48543,48138 48054,47828 47488) SCR (e 1.000 d 0.957 a 1.000,e 1.000 d 0.000 a 0.000,e 1.000 d 0.580 a 0.978,e 1.000 d 0.984 a 1.000,e 1.000 d 0.843 a 0.990,e 1.000 d 0.998 a 0.458,e 1.000 d 1.000 a 0.392,e 1.000 d 0.770 a 0.890,e 0.997) Exon 1 51948 51714 ( 235 n); score: 1.000 Intron 1 51713 51137 ( 577 n); Pd: 0.957 Pa: 1.000 Exon 2 51136 51089 ( 48 n); score: 1.000 Intron 2 51088 50872 ( 217 n); Pd: 0.000 Pa: 0.000 Exon 3 50871 50607 ( 265 n); score: 1.000 Intron 3 50606 50493 ( 114 n); Pd: 0.580 Pa: 0.978 Exon 4 50492 50420 ( 73 n); score: 1.000 Intron 4 50419 49422 ( 998 n); Pd: 0.984 Pa: 1.000 Exon 5 49421 49341 ( 81 n); score: 1.000 Intron 5 49340 49255 ( 86 n); Pd: 0.843 Pa: 0.990 Exon 6 49254 49191 ( 64 n); score: 1.000 Intron 6 49190 48631 ( 560 n); Pd: 0.998 Pa: 0.458 Exon 7 48630 48543 ( 88 n); score: 1.000 Intron 7 48542 48139 ( 404 n); Pd: 1.000 Pa: 0.392 Exon 8 48138 48054 ( 85 n); score: 1.000 Intron 8 48053 47829 ( 225 n); Pd: 0.770 Pa: 0.890 Exon 9 47828 47488 ( 341 n); score: 0.997 PGS (50656 50607,50492 50420,49421 49341,49254 49191,48630 48543,48138 48054,47828 47488) SGN-E542436- PGS (51948 51714,51136 51089,50871 50607,50492 50420,49421 49341,49254 49191,48630 48603) SGN-E542439+ PGS (51947 51714,51136 51089,50871 50607,50492 50468) SGN-E302172+ 3-phase translation of AGS-1 (-strand): . . . . . . 51948 TGTTGTCATAAAGGAGAATACTACTTATAGCTTTTTAGAAGTAATGGGTAGTGAAAATCA C C H K G E Y Y L - L F R S N G - - K S V V I K E N T T Y S F L E V M G S E N Q L S - R R I L L I A F - K - W V V K I . . . . . . 51888 ACAGCAATTTGAAGAGAATCTTCTTCATAATCATAATCATCAGGAGCAGCAGCAGCAGCA T A I - R E S S S - S - S S G A A A A A Q Q F E E N L L H N H N H Q E Q Q Q Q Q N S N L K R I F F I I I I I R S S S S S . . . . . . 51828 GAGGAAGAACCGTTCTTTAAGGAGTAAAGCTGCGCACTTTGTATCGGATGTTGCTACTGT E E E P F F K E - S C A L C I G C C Y C R K N R S L R S K A A H F V S D V A T V R G R T V L - G V K L R T L Y R M L L L . . . . . . : 51768 TATTCTTAACCCCATATCTGATAAACCCTTAAAGCCCAGACCACCACCTTTGCCT : GAAGA Y S - P H I - - T L K A Q T T T F A : - R I L N P I S D K P L K P R P P P L P : E D L F L T P Y L I N P - S P D H H L C L : K . . . . . : . 51131 TGGATCTGATTCTGACGGAAGTAAGCATGAGTCAAATGCAGAG : CTCTTCACCAAGTTGCT W I - F - R K - A - V K C R : A L H Q V A G S D S D G S K H E S N A E : L F T K L L M D L I L T E V S M S Q M Q S : S S P S C . . . . . . 50854 AGACTAGGCGGCTTTAGGAATCAGGGTTCGGCAAAGGGCAGCTCTGATATGGTGTTTGAT R L G G F R N Q G S A K G S S D M V F D D - A A L G I R V R Q R A A L I W C L M - T R R L - E S G F G K G Q L - Y G V - . . . . . . 50794 GATGGAAGTAATTCTAAAGTTTCCGGAGATAATCAAATACCTTTGGAAGATATGAATAAG D G S N S K V S G D N Q I P L E D M N K M E V I L K F P E I I K Y L W K I - I R - W K - F - S F R R - S N T F G R Y E - . . . . . . 50734 AAACCTCTTCTGAACAATCTTCCGGGAACTTCTGAGCCTTCAGTTCTCCTCACTGAGAAG K P L L N N L P G T S E P S V L L T E K N L F - T I F R E L L S L Q F S S L R R E T S S E Q S S G N F - A F S S P H - E . . . . . . 50674 GCACGAATTTCTCTTTATGCTGCACTGCCTGTGCTTGTGCAGGACAGGAAGTGGGTCTTG A R I S L Y A A L P V L V Q D R K W V L H E F L F M L H C L C L C R T G S G S C G T N F S L C C T A C A C A G Q E V G L . : . . . . . 50614 TTATACAG : TACATGGAAGAATGGAATATCACTCTCGACTTTATACAGGAGAAGCCTACTC L Y S : T W K N G I S L S T L Y R R S L L Y T : V H G R M E Y H S R L Y T G E A Y S V I Q : Y M E E W N I T L D F I Q E K P T . . . : . . . 50440 TGGCCTGGCATCAGTCTGCTG : GTTGTGGGGGACCATAATGGTGCTGTGTTTGGTGGGCTA W P G I S L L : V V G D H N G A V F G G L G L A S V C W : L W G T I M V L C L V G - L A W H Q S A : G C G G P - W C C V W W A . . . . . : . 49382 GTTGATGCACCTTTAAAGCCAACAACAAAGAGAAGATATCAG : GGTACAAACAATTCATTT V D A P L K P T T K R R Y Q : G T N N S F L M H L - S Q Q Q R E D I R : V Q T I H L S - C T F K A N N K E K I S : G Y K Q F I . . . . . : . 49236 GTTTTCTCAAATGTATCTGGCCAACCTGTCATATTTCGTCCCACAG : GTGTCAATCGCTAT V F S N V S G Q P V I F R P T : G V N R Y F S Q M Y L A N L S Y F V P Q : V S I A I C F L K C I W P T C H I S S H R : C Q S L . . . . . . 48616 TTTACTGTCTGTTCCACGGAGTATTTAGCTTTGGGAGGCGGTGGCCATTTTGCTCTCTAC F T V C S T E Y L A L G G G G H F A L Y L L S V P R S I - L W E A V A I L L S T F Y C L F H G V F S F G R R W P F C S L . . : . . . . 48556 TTAGACGGGGATCT : GCTAACAGGTTCAAGTGCAACATCAGAAACTTATGGAAATTCTTGT L D G D L : L T G S S A T S E T Y G N S C - T G I : C - Q V Q V Q H Q K L M E I L V L R R G S : A N R F K C N I R N L W K F L . . . . : . . 48092 TTGGCACATACTGAAGACTTTGAAGTTAAGGAAGTTGAG : TTATGGGGCTTTGTATATGCT L A H T E D F E V K E V E : L W G F V Y A W H I L K T L K L R K L S : Y G A L Y M L F G T Y - R L - S - G S - : V M G L C I C . . . . . . 47807 TCCAAGTATGAAGAGATGGTTTCGATTTTGCGAACAGAGACACCTGGAATTTGCCGCTGG S K Y E E M V S I L R T E T P G I C R W P S M K R W F R F C E Q R H L E F A A G F Q V - R D G F D F A N R D T W N L P L . . . . . . 47747 TAAACACAGTGTTAAAGATGCTTGCTTTCCAGTCTAAATGATTGTTTCTGTTTGGTGCCC - T Q C - R C L L S S L N D C F C L V P K H S V K D A C F P V - M I V S V W C P V N T V L K M L A F Q S K - L F L F G A . . . . . . 47687 ATGGTTGCGGACAGCACCACATGGAATGCAGGATAGGTTTTGTACATATGTTTTCACATG M V A D S T T W N A G - V L Y I C F H M W L R T A P H G M Q D R F C T Y V F T C H G C G Q H H M E C R I G F V H M F S H . . . . . . 47627 TTCAGCAACAATTTTACACTTGTATAGGTGTGTTTCTTTACATGTACAGTGAACCATTTT F S N N F T L V - V C F F T C T V N H F S A T I L H L Y R C V S L H V Q - T I L V Q Q Q F Y T C I G V F L Y M Y S E P F . . . . . . 47567 GATAAAATTCTCTTTGCTTCGGTAAATGAGAATGAACGTGAGAGCTAAATGAAAATATTC D K I L F A S V N E N E R E S - M K I F I K F S L L R - M R M N V R A K - K Y S - - N S L C F G K - E - T - E L N E N I . . 47507 ATTAAACTGTTCTCCAGAAA I K L F S R L N C S P E H - T V L Q K Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-5_AGS-1_PPS_1 (51101 51089,50871 50607,50492 50420,49421 49341,49254 49191,48630 48543,48138 48054,47828 47745) (frame '1'; 750 bp, 250 residues) 1 VKCRALHQVA RLGGFRNQGS AKGSSDMVFD DGSNSKVSGD NQIPLEDMNK KPLLNNLPGT 61 SEPSVLLTEK ARISLYAALP VLVQDRKWVL LYSTWKNGIS LSTLYRRSLL WPGISLLVVG 121 DHNGAVFGGL VDAPLKPTTK RRYQGTNNSF VFSNVSGQPV IFRPTGVNRY FTVCSTEYLA 181 LGGGGHFALY LDGDLLTGSS ATSETYGNSC LAHTEDFEVK EVELWGFVYA SKYEEMVSIL 241 RTETPGICRW - AGS-2 (52064 51714,51136 50851) SCR (e 1.000 d 0.957 a 1.000,e 1.000) Exon 1 52064 51714 ( 351 n); score: 1.000 Intron 1 51713 51137 ( 577 n); Pd: 0.957 Pa: 1.000 Exon 2 51136 50851 ( 286 n); score: 1.000 PGS (52040 51714,51136 50851) SGN-E214805+ PGS (52064 51714,51136 50921) SGN-E304534+ PGS (52047 51714,51136 50934) SGN-E330393+ 3-phase translation of AGS-2 (-strand): . . . . . . 52064 CTTTCTCCTAATATTCCACCCACTTTCCTTTTCCTTTTTAGGTATATTCTCAACTCTTTT L S P N I P P T F L F L F R Y I L N S F F L L I F H P L S F S F L G I F S T L F F S - Y S T H F P F P F - V Y S Q L F . . . . . . 52004 TCACCATTAATGGCGTTTTAGAGCATCACAAACCCCAAAAAAGTAGTGGAATTTGTTGTT S P L M A F - S I T N P K K V V E F V V H H - W R F R A S Q T P K K - W N L L L F T I N G V L E H H K P Q K S S G I C C . . . . . . 51944 GTCATAAAGGAGAATACTACTTATAGCTTTTTAGAAGTAATGGGTAGTGAAAATCAACAG V I K E N T T Y S F L E V M G S E N Q Q S - R R I L L I A F - K - W V V K I N S C H K G E Y Y L - L F R S N G - - K S T . . . . . . 51884 CAATTTGAAGAGAATCTTCTTCATAATCATAATCATCAGGAGCAGCAGCAGCAGCAGAGG Q F E E N L L H N H N H Q E Q Q Q Q Q R N L K R I F F I I I I I R S S S S S R G A I - R E S S S - S - S S G A A A A A E . . . . . . 51824 AAGAACCGTTCTTTAAGGAGTAAAGCTGCGCACTTTGTATCGGATGTTGCTACTGTTATT K N R S L R S K A A H F V S D V A T V I R T V L - G V K L R T L Y R M L L L L F E E P F F K E - S C A L C I G C C Y C Y . . . . . . : 51764 CTTAACCCCATATCTGATAAACCCTTAAAGCCCAGACCACCACCTTTGCCT : GAAGATGGA L N P I S D K P L K P R P P P L P : E D G L T P Y L I N P - S P D H H L C L : K M D S - P H I - - T L K A Q T T T F A : - R W . . . . . . 51127 TCTGATTCTGACGGAAGTAAGCATGAGTCAAATGCAGAGGGAGATGCCACTGATTTAGTT S D S D G S K H E S N A E G D A T D L V L I L T E V S M S Q M Q R E M P L I - L I - F - R K - A - V K C R G R C H - F S . . . . . . 51067 GACGGTCCTGATACATCTTCTTTCTCAGCGTTCCTATATTCACTGTTGTCGACCACAGGA D G P D T S S F S A F L Y S L L S T T G T V L I H L L S Q R S Y I H C C R P Q D - R S - Y I F F L S V P I F T V V D H R . . . . . . 51007 TCCGAGAGTAAGCCTAACACTATTGGAAAATATGATAAGCAAGATGATCGTGATGAGTCA S E S K P N T I G K Y D K Q D D R D E S P R V S L T L L E N M I S K M I V M S Q I R E - A - H Y W K I - - A R - S - - V . . . . . . 50947 ATACCTGAACTTACAATGAGGGAACCTAGCAGAAGAAAAGGTATACTTTCCAGGGGTAAA I P E L T M R E P S R R K G I L S R G K Y L N L Q - G N L A E E K V Y F P G V N N T - T Y N E G T - Q K K R Y T F Q G - . . . . 50887 CATTCCCTCGGCAGAGCTCTTCACCAAGTTGCTAGAC H S L G R A L H Q V A R I P S A E L F T K L L D T F P R Q S S S P S C - Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-5_AGS-2_PPS_1 (51983 51714,51136 50852) (frame '1'; 555 bp, 185 residues) 1 SITNPKKVVE FVVVIKENTT YSFLEVMGSE NQQQFEENLL HNHNHQEQQQ QQRKNRSLRS 61 KAAHFVSDVA TVILNPISDK PLKPRPPPLP EDGSDSDGSK HESNAEGDAT DLVDGPDTSS 121 FSAFLYSLLS TTGSESKPNT IGKYDKQDDR DESIPELTMR EPSRRKGILS RGKHSLGRAL 181 HQVAR PGL 6 (+ strand): 52162 52842 AGS-1 (52162 52259,52388 52398,52562 52572) SCR (e 0.908 d 0.948 a 0.827,e 0.909 d 0.000 a 0.784,e 0.818) Exon 1 52162 52259 ( 98 n); score: 0.908 Intron 1 52260 52387 ( 128 n); Pd: 0.948 Pa: 0.827 Exon 2 52388 52398 ( 11 n); score: 0.909 Intron 2 52399 52561 ( 163 n); Pd: 0.000 Pa: 0.784 Exon 3 52562 52572 ( 11 n); score: 0.818 PGS (52162 52259,52388 52398,52562 52572) SGN-E394572+ PGS (52162 52259,52388 52398,52562 52572) SGN-E261115- PGS (52162 52259,52388 52398,52562 52572) SGN-E261154- PGS (52162 52248) SGN-E261226- 3-phase translation of AGS-1 (+strand): . . . . . . 52162 GTTCAAACGTAAAGACTTCATGGCCCAATGGATAAGGCGCTGGTCTACGAAACCAGAGAT V Q T - R L H G P M D K A L V Y E T R D F K R K D F M A Q W I R R W S T K P E I S N V K T S W P N G - G A G L R N Q R . . . . : . : . 52222 TCTGGGTTCGATCCCCAGTGAAGTCGTCGTTGATGTTG : ATACTTACATA : TCATTCTTATG S G F D P Q - S R R - C - : Y L H : I I L M L G S I P S E V V V D V : D T Y I : S F L F W V R S P V K S S L M L : I L T Y : H S Y Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (52607 52842) SCR (e 0.742) Exon 1 52607 52842 ( 236 n); score: 0.742 PGS (52607 52842) SGN-E260732- 3-phase translation of AGS-2 (+strand): . . . . . . 52607 ATGTGTTTTCTAAATCCTATAAAATGATAGTCTTTCTCCATTTTGAAACACAACAAAAGA M C F L N P I K - - S F S I L K H N K R C V F - I L - N D S L S P F - N T T K E V F S K S Y K M I V F L H F E T Q Q K . . . . . . 52667 GATACAAAAATACTCTCTACTACTTTATACTTCTCATTCACATTTATCTTTCATTTCTTG D T K I L S T T L Y F S F T F I F H F L I Q K Y S L L L Y T S H S H L S F I S C R Y K N T L Y Y F I L L I H I Y L S F L . . . . . . 52727 TTTAGTATTATTATATTTTGCACTCATTTTATAACACGTTATTCACACTAGTCTTTAACC F S I I I F C T H F I T R Y S H - S L T L V L L Y F A L I L - H V I H T S L - P V - Y Y Y I L H S F Y N T L F T L V F N . . . . . . 52787 AACTGAGACCTACTTAATTTGAAATTAATTCCTAAAAGTTAATCAACTTTATTTTA N - D L L N L K L I P K S - S T L F T E T Y L I - N - F L K V N Q L Y F Q L R P T - F E I N S - K L I N F I L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 52842 TAAAATAAAGTTGATTAACTTTTAGGAATTAATTTCAAATTAAGTAGGTCTCAGTTGGTT - N K V D - L L G I N F K L S R S Q L V K I K L I N F - E L I S N - V G L S W L K - S - L T F R N - F Q I K - V S V G . . . . . . 52782 AAAGACTAGTGTGAATAACGTGTTATAAAATGAGTGCAAAATATAATAATACTAAACAAG K D - C E - R V I K - V Q N I I I L N K K T S V N N V L - N E C K I - - Y - T R - R L V - I T C Y K M S A K Y N N T K Q . . . . . . 52722 AAATGAAAGATAAATGTGAATGAGAAGTATAAAGTAGTAGAGAGTATTTTTGTATCTCTT K - K I N V N E K Y K V V E S I F V S L N E R - M - M R S I K - - R V F L Y L F E M K D K C E - E V - S S R E Y F C I S . . . . . . 52662 TTGTTGTGTTTCAAAATGGAGAAAGACTATCATTTTATAGGATTTAGAAAACACAT L L C F K M E K D Y H F I G F R K H C C V S K W R K T I I L - D L E N T F V V F Q N G E R L S F Y R I - K T H Maximal non-overlapping open reading frames (>= 64 codons): none PGL 7 (- strand): 54435 54101 AGS-1 (54435 54101) SCR (e 0.788) Exon 1 54435 54101 ( 335 n); score: 0.788 PGS (54435 54101) SGN-E213530+ 3-phase translation of AGS-1 (-strand): . . . . . . 54435 ATTTAAAGGAAAACATACATAAATATATTATAATAAAAAAATATTTACCATTTATAGCAA I - R K T Y I N I L - - K N I Y H L - Q F K G K H T - I Y Y N K K I F T I Y S N L K E N I H K Y I I I K K Y L P F I A . . . . . . 54375 TAACATTTTTTTCACTTTTGATCACTTTTAATTCATTTATAATACAAGTTTAATACATAT - H F F H F - S L L I H L - Y K F N T Y N I F F T F D H F - F I Y N T S L I H I I T F F S L L I T F N S F I I Q V - Y I . . . . . . 54315 TACAAACAACAATTTATTATTCACATATACAAGTTTTAATGATAGATAATACATTTATCA Y K Q Q F I I H I Y K F - - - I I H L S T N N N L L F T Y T S F N D R - Y I Y H L Q T T I Y Y S H I Q V L M I D N T F I . . . . . . 54255 CACATTTTAATTCACTTATAATATAATGTGGCAAATTCTACCAAAAAAATTTATATATTT H I L I H L - Y N V A N S T K K I Y I F T F - F T Y N I M W Q I L P K K F I Y F T H F N S L I I - C G K F Y Q K N L Y I . . . . . . 54195 CAAAAAATAATTATAATTCATATATATGATATATATAATTCATTTTTAATTCATATTACA Q K I I I I H I Y D I Y N S F L I H I T K K - L - F I Y M I Y I I H F - F I L Q S K N N Y N S Y I - Y I - F I F N S Y Y . . . . 54135 GAGTTAACATAGTATTATTATAAATGGTAATAAAT E L T - Y Y Y K W - - S - H S I I I N G N K R V N I V L L - M V I N Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 54101 ATTTATTACCATTTATAATAATACTATGTTAACTCTGTAATATGAATTAAAAATGAATTA I Y Y H L - - Y Y V N S V I - I K N E L F I T I Y N N T M L T L - Y E L K M N Y L L P F I I I L C - L C N M N - K - I . . . . . . 54161 TATATATCATATATATGAATTATAATTATTTTTTGAAATATATAAATTTTTTTGGTAGAA Y I S Y I - I I I I F - N I - I F L V E I Y H I Y E L - L F F E I Y K F F W - N I Y I I Y M N Y N Y F L K Y I N F F G R . . . . . . 54221 TTTGCCACATTATATTATAAGTGAATTAAAATGTGTGATAAATGTATTATCTATCATTAA F A T L Y Y K - I K M C D K C I I Y H - L P H Y I I S E L K C V I N V L S I I K I C H I I L - V N - N V - - M Y Y L S L . . . . . . 54281 AACTTGTATATGTGAATAATAAATTGTTGTTTGTAATATGTATTAAACTTGTATTATAAA N L Y M - I I N C C L - Y V L N L Y Y K T C I C E - - I V V C N M Y - T C I I N K L V Y V N N K L L F V I C I K L V L - . . . . . . 54341 TGAATTAAAAGTGATCAAAAGTGAAAAAAATGTTATTGCTATAAATGGTAAATATTTTTT - I K S D Q K - K K C Y C Y K W - I F F E L K V I K S E K N V I A I N G K Y F F M N - K - S K V K K M L L L - M V N I F . . . . 54401 TATTATAATATATTTATGTATGTTTTCCTTTAAAT Y Y N I F M Y V F L - I I I Y L C M F S F K L L - Y I Y V C F P L N Maximal non-overlapping open reading frames (>= 64 codons): none PGL 8 (+ strand): 55817 59543 AGS-1 (55817 56078,57338 57483,57693 57911,58681 58893,58982 59543) SCR (e 1.000 d 0.991 a 0.568,e 1.000 d 0.997 a 0.985,e 1.000 d 0.997 a 0.613,e 1.000 d 1.000 a 1.000,e 1.000) Exon 1 55817 56078 ( 262 n); score: 1.000 Intron 1 56079 57337 (1259 n); Pd: 0.991 Pa: 0.568 Exon 2 57338 57483 ( 146 n); score: 1.000 Intron 2 57484 57692 ( 209 n); Pd: 0.997 Pa: 0.985 Exon 3 57693 57911 ( 219 n); score: 1.000 Intron 3 57912 58680 ( 769 n); Pd: 0.997 Pa: 0.613 Exon 4 58681 58893 ( 213 n); score: 1.000 Intron 4 58894 58981 ( 88 n); Pd: 1.000 Pa: 1.000 Exon 5 58982 59543 ( 562 n); score: 1.000 PGS (55817 56078,57338 57483,57693 57911,58681 58840) SGN-E543099+ PGS (55818 56078,57338 57483,57693 57911,58681 58706) SGN-E303315+ PGS (55894 56078,57338 57483,57693 57901) SGN-E245265+ PGS (55957 56078,57338 57483,57693 57911,58681 58893,58982 59180) SGN-E553596+ PGS (55960 56078,57338 57483,57693 57911,58681 58825) SGN-E309088+ PGS (55974 56078,57338 57483,57693 57911,58681 58893,58982 59018) SGN-E556478+ PGS (55978 56078,57338 57483,57693 57911,58681 58893,58982 59122) SGN-E553891+ PGS (55978 56078,57338 57483,57693 57911,58681 58816) SGN-E310028+ PGS (55978 56078,57338 57483,57693 57911,58681 58723) SGN-E310247+ PGS (55979 56078,57338 57483,57693 57911,58681 58739) SGN-E330376+ PGS (55981 56078,57338 57483,57693 57869) SGN-E338047+ PGS (55982 56078,57338 57483,57693 57911,58681 58823) SGN-E306201+ PGS (55982 56078,57338 57483,57693 57911,58681 58738) SGN-E341290+ PGS (55985 56078,57338 57483,57693 57911,58681 58893,58982 59052) SGN-E335553+ PGS (55985 56078,57338 57483,57693 57911,58681 58823) SGN-E330285+ PGS (55987 56078,57338 57483,57693 57911,58681 58742) SGN-E304596+ PGS (55988 56078,57338 57483,57693 57911,58681 58805) SGN-E245809+ PGS (55989 56078,57338 57483,57693 57911,58681 58737) SGN-E276455+ PGS (55991 56078,57338 57482) SGN-E239993+ PGS (55995 56078,57338 57483,57693 57826) SGN-E305656+ PGS (55998 56078,57338 57483,57693 57827) SGN-E337494+ PGS (56003 56078,57338 57483,57693 57911,58681 58818) SGN-E310310+ PGS (56009 56078,57338 57483,57693 57821) SGN-E309538+ PGS (56010 56078,57338 57483,57693 57911) SGN-E324520+ PGS (56011 56078,57338 57483,57693 57885) SGN-E335608+ PGS (56017 56078,57338 57483,57693 57911,58681 58823) SGN-E202737+ PGS (56017 56078,57338 57483,57693 57837) SGN-E281308+ PGS (56020 56078,57338 57483,57693 57911,58681 58791) SGN-E231374+ PGS (57437 57483,57693 57911,58681 58818) SGN-E272383+ PGS (58679 58893,58982 59543) SGN-E543098- PGS (58694 58893,58982 59504) SGN-E357915+ PGS (58694 58893,58982 59402) SGN-E356531+ PGS (58727 58893,58982 59426) SGN-E353616+ PGS (58743 58893,58982 59426) SGN-E353633+ PGS (58757 58893,58982 59447) SGN-E277083+ PGS (59008 59446) SGN-E238753- PGS (59066 59503) SGN-E311278+ PGS (59069 59446) SGN-E238977- PGS (59274 59502) SGN-E309089- 3-phase translation of AGS-1 (+strand): . . . . . . 55817 CATAAAAGTTATGTTACGTTACAAAAATAATAAAATCGTGTATCCCAATGACTTTTGCGA H K S Y V T L Q K - - N R V S Q - L L R I K V M L R Y K N N K I V Y P N D F C D - K L C Y V T K I I K S C I P M T F A . . . . . . 55877 TGGCAAAAAATGTCTGAATCCACTTTTTATGTTCCCACGTATATTCTTGAGATTGTACAT W Q K M S E S T F Y V P T Y I L E I V H G K K C L N P L F M F P R I F L R L Y I M A K N V - I H F L C S H V Y S - D C T . . . . . . 55937 ATACTATAGTTTTGACTCATAAATAATTCAAGAACACACAGCACATTCTCAAGAAAGGGA I L - F - L I N N S R T H S T F S R K G Y Y S F D S - I I Q E H T A H S Q E R E Y T I V L T H K - F K N T Q H I L K K G . . . . . . 55997 AAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAG K K M S S L K V P A S V P D P Y E D A E K K C L V L K F Q H Q F Q I L M K M L S K K N V - S - S S S I S S R S L - R C - . . . : . . . 56057 CAACTCAAAAAAGCTTTTAAAG : GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTG Q L K K A F K : G W G T N E E L I I Q I L N S K K L L K : D G A Q M R N L L F R F W A T Q K S F - R : M G H K - G T Y Y S D S . . . . . . 57376 GCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGA A H R N A A Q R K L I R D S Y A A A Y G L I G M Q H N A S - S E I L M L L L M E G S - E C S T T Q V N P R F L C C C L W . . . . . : . 57436 GAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG : CGTGTGGTGCTT E D L L K D L D S E L T S D F Q : R V V L R I F S R T W I L N - Q V I F S : V W C F R G S S Q G L G F - T D K - F S : A C G A . . . . . . 57705 CTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGT L W T L S P A E R D A Y L V N E A T K R S G L - V L L S A T P T W L M R L P N V S L D F E S C - A R R L L G - - G Y Q T . . . . . . 57765 CTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTT L T A S N W V I M E I A C T R S S D D L - L L A I G L S W K L L V P G L L M I F S D C - Q L G Y H G N C L Y Q V F - - S . . . . . . 57825 TTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCT F K A R Q A Y H A R Y K K S L E E D V A L R R G R P T M L D T R N H L K K M L L F - G E A G L P C S I Q E I T - R R C C . . . : . . . 57885 TATCATACAAGTGGGGATTTCCGTAAG : CTTTTGGTTCCTCTTATAACTGCATTCAGATAT Y H T S G D F R K : L L V P L I T A F R Y I I Q V G I S V S : F W F L L - L H S D M L S Y K W G F P - : A F G S S Y N C I Q I . . . . . . 58714 GAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAG E G D E V N M T L A R K E A N I L H E K K E M R - T - H - Q E R K Q I Y C M R R - R R - G E H D I S K K G S K Y T A - E . . . . . . 58774 ATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAA I S D K A Y N D E E I I R I I S T R S K S L T R L T M T R R S S E S F L L G V K D L - Q G L Q - R G D H P N H F Y - E - . . . . . . : 58834 GCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG : A Q L S A T F N H Y N D H H G H E I I K : H S - V L R S T T T M I T M A M K S S R : S T A E C Y V Q P L Q - S P W P - N H Q : . . . . . . 58982 GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGC D L E A D D D D E Y L K L L R A A I E C I W K L M M T M S T - N Y S E Q Q - N A G S G S - - - R - V P E T T Q S S N R M . . . . . . 59042 TTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGT L K T P E K H F E K V L R L A I K K L G - K P Q R N T L R K F F D W L S R S W V L E N P R E T L - E S S S I G Y Q E A G . . . . . . 59102 ACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGT T D E W D L T R V V A T R A E V D M E R Q T N G I L L E L L P L G L K L T W S V Y R R M G S Y - S C C H S G - S - H G A . . . . . . 59162 ATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGAC I K E E Y H R R N S V T L D R A I A G D S K K S T I G G T V L H W T V Q L L E T Y Q R R V P - E E Q C Y I G P C N C W R . . . . . . 59222 ACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATT T S G D Y E K M L L A L I G H G D A - I L Q E T M K K C F W L - L G T E M L E L H F R R L - K N A S G S D W A R R C L N . . . . . . 59282 ACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATT T C A E T L R - - K K L Y L F S E V - I H V L K P - D N K K N S T Y F L K F E F Y M C - N L K I I K K T L L I F - S L N . . . . . . 59342 TGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAA C F Y D V W C V L S E F G S V F I - T K A F M M Y G V Y S Q S L V L C L Y E L K L L L - C M V C T L R V W F C V Y M N - . . . . . . 59402 AACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTCATTTCGGACTTCTAC N T R E L S C V L F S P S L F I S D F Y T L G S - V V F C F R L H F S F R T S T K H S G V E L C F V F A F T F H F G L L . . . . . . 59462 TGGTTTTGCCTGCTAAATAAGCATAGCTTCAACTTTGGCTTGAACGGATCTTGTTTCTTT W F C L L N K H S F N F G L N G S C F F G F A C - I S I A S T L A - T D L V S L L V L P A K - A - L Q L W L E R I L F L . . . 59522 ATAACTCAGAAATAGATTATGT I T Q K - I M - L R N R L C Y N S E I D Y Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1+_PGL-8_AGS-1_PPS_1 (55952 56078,57338 57483,57693 57911,58681 58893,58982 59278) (frame '1'; 999 bp, 333 residues) 1 LINNSRTHST FSRKGKKMSS LKVPASVPDP YEDAEQLKKA FKGWGTNEEL IIQILAHRNA 61 AQRKLIRDSY AAAYGEDLLK DLDSELTSDF QRVVLLWTLS PAERDAYLVN EATKRLTASN 121 WVIMEIACTR SSDDLFKARQ AYHARYKKSL EEDVAYHTSG DFRKLLVPLI TAFRYEGDEV 181 NMTLARKEAN ILHEKISDKA YNDEEIIRII STRSKAQLSA TFNHYNDHHG HEIIKDLEAD 241 DDDEYLKLLR AAIECLKTPE KHFEKVLRLA IKKLGTDEWD LTRVVATRAE VDMERIKEEY 301 HRRNSVTLDR AIAGDTSGDY EKMLLALIGH GDA- PGL 9 (- strand): 65330 59671 AGS-1 (60160 59671) SCR (e 1.000) Exon 1 60160 59671 ( 490 n); score: 1.000 PGS (60126 59671) SGN-E540879+ PGS (60126 59685) SGN-E548457- PGS (59871 59685) SGN-E344353+ PGS (60126 59687) SGN-E290651+ PGS (60160 59821) SGN-E549022- PGS (60068 59821) SGN-E228553- 3-phase translation of AGS-1 (-strand): . . . . . . 60160 TTATGTGTTCTCATGTGGCTGTCCTACTTTGTAGCCTGCTGGTGGTCAAAGCAATATTTT L C V L M W L S Y F V A C W W S K Q Y F Y V F S C G C P T L - P A G G Q S N I L M C S H V A V L L C S L L V V K A I F . . . . . . 60100 GTTTGGTGATGAACCTGTTGTCAACACAGTAAAGAAAATACATAACCAGAAGTTTGCAGA V W - - T C C Q H S K E N T - P E V C R F G D E P V V N T V K K I H N Q K F A E C L V M N L L S T Q - R K Y I T R S L Q . . . . . . 60040 GTTGACCGGCAATGACATTTTCAAGGGAGATATTCCTCCTGGATCTGCAGAAAAGCCACT V D R Q - H F Q G R Y S S W I C R K A T L T G N D I F K G D I P P G S A E K P L S - P A M T F S R E I F L L D L Q K S H . . . . . . 59980 GAGCAGAGCAAAGCTGAGAGAAATGAGTGGAAATGATATTTTTTCTGATGGAAAAGTTGA E Q S K A E R N E W K - Y F F - W K S - S R A K L R E M S G N D I F S D G K V E - A E Q S - E K - V E M I F F L M E K L . . . . . . 59920 ATCCAGAGATTATTTTGGTGGCGTTCGTAAACCACCAGGCGGAGAAAGCAGCATCGCGCT I Q R L F W W R S - T T R R R K Q H R A S R D Y F G G V R K P P G G E S S I A L N P E I I L V A F V N H Q A E K A A S R . . . . . . 59860 GGTTTAGATAAATGTCATCAGACTGCTGCTATGTTTGACCTGTAGTGTTCCTGCAACATT G L D K C H Q T A A M F D L - C S C N I V - I N V I R L L L C L T C S V P A T F W F R - M S S D C C Y V - P V V F L Q H . . . . . . 59800 TCACTTCTAATGTTTCATGGGTTTTAGAATTGAGGGTTGTAGATGATATGTGTTTAACCA S L L M F H G F - N - G L - M I C V - P H F - C F M G F R I E G C R - Y V F N H F T S N V S W V L E L R V V D D M C L T . . . . . . 59740 TGTTGTACGGACAACTTCTAAACTATAATTTACATAAACTTGGAGGATTTGCCTAACATA C C T D N F - T I I Y I N L E D L P N I V V R T T S K L - F T - T W R I C L T - M L Y G Q L L N Y N L H K L G G F A - H . 59680 GTGTTTTTAA V F L C F - S V F Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-9_AGS-1_PPS_1 (60126 59854) (frame '2'; 270 bp, 90 residues) 1 PAGGQSNILF GDEPVVNTVK KIHNQKFAEL TGNDIFKGDI PPGSAEKPLS RAKLREMSGN 61 DIFSDGKVES RDYFGGVRKP PGGESSIALV - 3-phase translation of AGS-1 (+strand): . . . . . . 59671 TTAAAAACACTATGTTAGGCAAATCCTCCAAGTTTATGTAAATTATAGTTTAGAAGTTGT L K T L C - A N P P S L C K L - F R S C - K H Y V R Q I L Q V Y V N Y S L E V V K N T M L G K S S K F M - I I V - K L . . . . . . 59731 CCGTACAACATGGTTAAACACATATCATCTACAACCCTCAATTCTAAAACCCATGAAACA P Y N M V K H I S S T T L N S K T H E T R T T W L N T Y H L Q P S I L K P M K H S V Q H G - T H I I Y N P Q F - N P - N . . . . . . 59791 TTAGAAGTGAAATGTTGCAGGAACACTACAGGTCAAACATAGCAGCAGTCTGATGACATT L E V K C C R N T T G Q T - Q Q S D D I - K - N V A G T L Q V K H S S S L M T F I R S E M L Q E H Y R S N I A A V - - H . . . . . . 59851 TATCTAAACCAGCGCGATGCTGCTTTCTCCGCCTGGTGGTTTACGAACGCCACCAAAATA Y L N Q R D A A F S A W W F T N A T K I I - T S A M L L S P P G G L R T P P K - L S K P A R C C F L R L V V Y E R H Q N . . . . . . 59911 ATCTCTGGATTCAACTTTTCCATCAGAAAAAATATCATTTCCACTCATTTCTCTCAGCTT I S G F N F S I R K N I I S T H F S Q L S L D S T F P S E K I S F P L I S L S F N L W I Q L F H Q K K Y H F H S F L S A . . . . . . 59971 TGCTCTGCTCAGTGGCTTTTCTGCAGATCCAGGAGGAATATCTCCCTTGAAAATGTCATT C S A Q W L F C R S R R N I S L E N V I A L L S G F S A D P G G I S P L K M S L L L C S V A F L Q I Q E E Y L P - K C H . . . . . . 60031 GCCGGTCAACTCTGCAAACTTCTGGTTATGTATTTTCTTTACTGTGTTGACAACAGGTTC A G Q L C K L L V M Y F L Y C V D N R F P V N S A N F W L C I F F T V L T T G S C R S T L Q T S G Y V F S L L C - Q Q V . . . . . . 60091 ATCACCAAACAAAATATTGCTTTGACCACCAGCAGGCTACAAAGTAGGACAGCCACATGA I T K Q N I A L T T S R L Q S R T A T - S P N K I L L - P P A G Y K V G Q P H E H H Q T K Y C F D H Q Q A T K - D S H M . 60151 GAACACATAA E H I N T - R T H Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1+_PGL-9_AGS-1_PPS_1 (59833 60150) (frame '1'; 315 bp, 105 residues) 1 QQSDDIYLNQ RDAAFSAWWF TNATKIISGF NFSIRKNIIS THFSQLCSAQ WLFCRSRRNI 61 SLENVIAGQL CKLLVMYFLY CVDNRFITKQ NIALTTSRLQ SRTAT- AGS-2 (64504 64480,62535 62522,60528 60214,60126 59866) SCR (e 0.720 d 0.000 a 0.000,e 0.714 d 0.996 a 0.975,e 0.906 d 0.966 a 0.997,e 0.870) Exon 1 64504 64480 ( 25 n); score: 0.720 Intron 1 64479 62536 (1944 n); Pd: 0.000 Pa: 0.000 Exon 2 62535 62522 ( 14 n); score: 0.714 Intron 2 62521 60529 (1993 n); Pd: 0.996 Pa: 0.975 Exon 3 60528 60214 ( 315 n); score: 0.906 Intron 3 60213 60127 ( 87 n); Pd: 0.966 Pa: 0.997 Exon 4 60126 59866 ( 261 n); score: 0.870 PGS (60465 60214,60126 59866) SGN-E547325- PGS (60465 60214,60126 59866) SGN-E547326+ PGS (60465 60214,60126 59866) SGN-E546670+ PGS (64504 64480,62535 62522,60528 60214,60126 59994) SGN-E553956+ 3-phase translation of AGS-2 (-strand): . . . : . : . . 64504 TGTTAATTTGACAAATAATATATTT : AGCTTGAACAAACG : CAAGCTGCAAATGGAATAAGC C - F D K - Y I : - L E Q T : Q A A N G I S V N L T N N I F : S L N K R : K L Q M E - A L I - Q I I Y L : A - T N : A S C K W N K . . . . . . 60507 CAGATATCATTCAGTACTGAAGAAAGGATCTCTCCAAAGAAACCTATCACACTTACAGAA Q I S F S T E E R I S P K K P I T L T E R Y H S V L K K G S L Q R N L S H L Q K P D I I Q Y - R K D L S K E T Y H T Y R . . . . . . 60447 GTGGCAAAACAGAGAGAGTTGAGCGGAACACTAGAAAGTGATTCAGATAGCAATATGAAG V A K Q R E L S G T L E S D S D S N M K W Q N R E S - A E H - K V I Q I A I - R S G K T E R V E R N T R K - F R - Q Y E . . . . . . 60387 AAGCAGCTTTCAGATGCAAAGAGCAAGGAACTCAGTGGAAATGACATATTTGGCCCTCCC K Q L S D A K S K E L S G N D I F G P P S S F Q M Q R A R N S V E M T Y L A L P E A A F R C K E Q G T Q W K - H I W P S . . . . . . 60327 GCAGAAATTCCTCCTAGATCTTTGGCTGCTGCCCGATCCATAGAGTCAAAAGAAAGCAAA A E I P P R S L A A A R S I E S K E S K Q K F L L D L W L L P D P - S Q K K A K R R N S S - I F G C C P I H R V K R K Q . . . . . . : 60267 GACATGGGTGAACCTGCTCCACGACTTGTACGTACGTCTGTCAAGGTTTCTAAT : CCTGCT D M G E P A P R L V R T S V K V S N : P A T W V N L L H D L Y V R L S R F L I : L L R H G - T C S T T C T Y V C Q G F - : S C . . . . . . 60120 GGTGGTCAAAGCAATATTTTGTTTGGTGATGAACCTGTTGTCAACACAGTAAAGAAAATA G G Q S N I L F G D E P V V N T V K K I V V K A I F C L V M N L L S T Q - R K Y W W S K Q Y F V W - - T C C Q H S K E N . . . . . . 60060 CATAACCAGAAGTTTGCAGAGTTGACCGGCAATGACATTTTCAAGGGAGATATTCCTCCT H N Q K F A E L T G N D I F K G D I P P I T R S L Q S - P A M T F S R E I F L L T - P E V C R V D R Q - H F Q G R Y S S . . . . . . 60000 GGATCTGCAGAAAAGCCACTGAGCAGAGCAAAGCTGAGAGAAATGAGTGGAAATGATATT G S A E K P L S R A K L R E M S G N D I D L Q K S H - A E Q S - E K - V E M I F W I C R K A T E Q S K A E R N E W K - Y . . . . . . 59940 TTTTCTGATGGAAAAGTTGAATCCAGAGATTATTTTGGTGGCGTTCGTAAACCACCAGGC F S D G K V E S R D Y F G G V R K P P G F L M E K L N P E I I L V A F V N H Q A F F - W K S - I Q R L F W W R S - T T R . . 59880 GGAGAAAGCAGCATC G E S S I E K A A R R K Q H Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-9_AGS-2_PPS_1 (62533 62522,60528 60214,60126 59866) (frame '1'; 588 bp, 196 residues) 1 LEQTQAANGI SQISFSTEER ISPKKPITLT EVAKQRELSG TLESDSDSNM KKQLSDAKSK 61 ELSGNDIFGP PAEIPPRSLA AARSIESKES KDMGEPAPRL VRTSVKVSNP AGGQSNILFG 121 DEPVVNTVKK IHNQKFAELT GNDIFKGDIP PGSAEKPLSR AKLREMSGND IFSDGKVESR 181 DYFGGVRKPP GGESSI AGS-3 (62856 62671,62595 62522,60787 60652,60528 60291) SCR (e 1.000 d 1.000 a 0.987,e 1.000 d 0.996 a 0.903,e 1.000 d 0.999 a 0.975,e 1.000) Exon 1 62856 62671 ( 186 n); score: 1.000 Intron 1 62670 62596 ( 75 n); Pd: 1.000 Pa: 0.987 Exon 2 62595 62522 ( 74 n); score: 1.000 Intron 2 62521 60788 (1734 n); Pd: 0.996 Pa: 0.903 Exon 3 60787 60652 ( 136 n); score: 1.000 Intron 3 60651 60529 ( 123 n); Pd: 0.999 Pa: 0.975 Exon 4 60528 60291 ( 238 n); score: 1.000 PGS (62796 62671,62595 62522,60787 60652,60528 60291) SGN-E324699+ PGS (62856 62671,62595 62522,60787 60652,60528 60336) SGN-E304630+ PGS (60749 60652,60528 60338) SGN-E338305+ 3-phase translation of AGS-3 (-strand): . . . . . . 62856 TTTGTTTTATAAGATAAAGCAAAGACTTCCCATTTTCAAATTTCAGCTAAAATGGAGAGA F V L - D K A K T S H F Q I S A K M E R L F Y K I K Q R L P I F K F Q L K W R E C F I R - S K D F P F S N F S - N G E . . . . . . 62796 GCAACACCTGTACGGAAGCCTAACACCTCTGCCGCCGATCTGCTCACCTGGTCTGAAGTT A T P V R K P N T S A A D L L T W S E V Q H L Y G S L T P L P P I C S P G L K F S N T C T E A - H L C R R S A H L V - S . . . . . . 62736 CCGCCGGCGAACAACTCAGCTTCTGCCTCCGGCAATGCATCTCGCTCCGGCGCTCGTTCT P P A N N S A S A S G N A S R S G A R S R R R T T Q L L P P A M H L A P A L V L S A G E Q L S F C L R Q C I S L R R S F . : . . . . . 62676 CATCAG : CCTTCTGATGGAATCAGTAAGGTTCTGTTTGGAGGTCAAATTACTGAAGAGGAA H Q : P S D G I S K V L F G G Q I T E E E I S : L L M E S V R F C L E V K L L K R K S S : A F - W N Q - G S V W R S N Y - R G . . : . . . . 62541 GCTGAGAGCTTGAACAAACG : TAAACCATGTTCAGGGTACAAACTGAAGGAGATGAATGGC A E S L N K R : K P C S G Y K L K E M N G L R A - T N : V N H V Q G T N - R R - M A S - E L E Q T : - T M F R V Q T E G D E W . . . . . . 60747 AGCAAAATCTTTTCTGCTGATGGTGAAGATGATGCATCTGAATCAGGAGCTGTTAATGGT S K I F S A D G E D D A S E S G A V N G A K S F L L M V K M M H L N Q E L L M V Q Q N L F C - W - R - C I - I R S C - W . . . . : . . 60687 AACTTCAACAACAGGACATCTGTCCGCATTGTTCAG : CAAGCTGCAAATGGAATAAGCCAG N F N N R T S V R I V Q : Q A A N G I S Q T S T T G H L S A L F S : K L Q M E - A R - L Q Q Q D I C P H C S : A S C K W N K P . . . . . . 60504 ATATCATTCAGTACTGAAGAAAGGATCTCTCCAAAGAAACCTATCACACTTACAGAAGTG I S F S T E E R I S P K K P I T L T E V Y H S V L K K G S L Q R N L S H L Q K W D I I Q Y - R K D L S K E T Y H T Y R S . . . . . . 60444 GCAAAACAGAGAGAGTTGAGCGGAACACTAGAAAGTGATTCAGATAGCAATATGAAGAAG A K Q R E L S G T L E S D S D S N M K K Q N R E S - A E H - K V I Q I A I - R S G K T E R V E R N T R K - F R - Q Y E E . . . . . . 60384 CAGCTTTCAGATGCAAAGAGCAAGGAACTCAGTGGAAATGACATATTTGGCCCTCCCGCA Q L S D A K S K E L S G N D I F G P P A S F Q M Q R A R N S V E M T Y L A L P Q A A F R C K E Q G T Q W K - H I W P S R . . . . 60324 GAAATTCCTCCTAGATCTTTGGCTGCTGCCCGAT E I P P R S L A A A R K F L L D L W L L P D R N S S - I F G C C P Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-9_AGS-3_PPS_1 (62844 62671,62595 62522,60787 60652,60528 60292) (frame '1'; 621 bp, 207 residues) 1 DKAKTSHFQI SAKMERATPV RKPNTSAADL LTWSEVPPAN NSASASGNAS RSGARSHQPS 61 DGISKVLFGG QITEEEAESL NKRKPCSGYK LKEMNGSKIF SADGEDDASE SGAVNGNFNN 121 RTSVRIVQQA ANGISQISFS TEERISPKKP ITLTEVAKQR ELSGTLESDS DSNMKKQLSD 181 AKSKELSGND IFGPPAEIPP RSLAAAR AGS-4 (65330 64099) SCR (e 0.969) Exon 1 65330 64099 (1232 n); score: 0.969 PGS (64579 64099) SGN-E208613+ PGS (64655 64247) SGN-E289962+ PGS (65056 64387) SGN-E391540+ PGS (65013 64431) SGN-E267707+ PGS (65056 64507) SGN-E205808+ PGS (65056 64604) SGN-E202657+ PGS (65330 64725) SGN-E273497- PGS (65057 64725) SGN-E273387- 3-phase translation of AGS-4 (-strand): . . . . . . 65330 CAGAGTCTATGATACGCCGGAAGCGTAATAGACCAATCAATTCCAAATATAAAATTCCTT Q S L - Y A G S V I D Q S I P N I K F L R V Y D T P E A - - T N Q F Q I - N S L E S M I R R K R N R P I N S K Y K I P . . . . . . 65270 GAAGAAGGAAGGAGCAAATGATCAATATGGTCATGATAATGAGGCAAGTGCTATAAAAGA E E G R S K - S I W S - - - G K C Y K R K K E G A N D Q Y G H D N E A S A I K E - R R K E Q M I N M V M I M R Q V L - K . . . . . . 65210 GCACATTGACATAACAATTCATAAAATCTTGAAAAAGGTTCAGGTACCTGAAATAATGAA A H - H N N S - N L E K G S G T - N N E H I D I T I H K I L K K V Q V P E I M K S T L T - Q F I K S - K R F R Y L K - - . . . . . . 65150 AAATGAAGAGATCTCGATAAGTTATGTCTTGTTGGAATCGATATCAAATAACCGTCGACG K - R D L D K L C L V G I D I K - P S T N E E I S I S Y V L L E S I S N N R R R K M K R S R - V M S C W N R Y Q I T V D . . . . . . 65090 GTATCTTTGATATGAGGTAGCGCTCAATGATATAATCTTGAATTCAAATCTGTCATATAG V S L I - G S A Q - Y N L E F K S V I - Y L - Y E V A L N D I I L N S N L S Y S G I F D M R - R S M I - S - I Q I C H I . . . . . . 65030 TGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACT C E Q I N G W P S K M H N S S I F C F T V N R - M V G Q V K C T I Q V Y F V S L V - T D K W L A K - N A Q F K Y I L F H . . . . . . 64970 TAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTAC - K S D I L D W - S I N Q G I M S V G Y R K V T F W T G S P - I K V - C Q W G T L E K - H F G L V V H K S R Y N V S G V . . . . . . 64910 AAATAAATTATTATGCGATAGTATAACTGTAAGATATCAAATACGATTTGTGCCTTGGGG K - I I M R - Y N C K I S N T I C A L G N K L L C D S I T V R Y Q I R F V P W G Q I N Y Y A I V - L - D I K Y D L C L G . . . . . . 64850 CATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATG H K G L S Q K S - H - W R C F L L W W M I K V Y R K N P D I S G D V F S F G G - A - R F I A K I L T L V E M F S P L V D . . . . . . 64790 AAATGAGGTTTGTTTTGATCTGGCAACATATGAAAACTTGAATGCATGTAAATGAATAAT K - G L F - S G N I - K L E C M - M N N N E V C F D L A T Y E N L N A C K - I I E M R F V L I W Q H M K T - M H V N E - . . . . . . 64730 TTTAATGTCTAGCTAGACAATGAATGTTATATGAAAATCCTTGAAACAATCGAGGTGTCT F N V - L D N E C Y M K I L E T I E V S L M S S - T M N V I - K S L K Q S R C L F - C L A R Q - M L Y E N P - N N R G V . . . . . . 64670 GAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGA E A Y K S L K E T F P I K L Q E S L Y G K H I R V - K K L F Q - S F K N P Y M D - S I - E F E R N F S N K A S R I L I W . . . . . . 64610 TTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTT L K - S R K K K G T K E - S - L S L Y F - N S Q G R K R V Q K N D P N C P C I F I E I V K E E K G Y K R M I L I V L V F . . . . . . 64550 TATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAA Y E K V L V R Q N F V L T Y R L L I - Q M K R S W - D K I L S - P T D C - F D K L - K G L G K T K F C L D L Q I V N L T . . . . . . 64490 ATAATATATTTGTCTAACAGTGCACATACACTGAAAATTTTTGATGCAATTTTATGTGGA I I Y L S N S A H T L K I F D A I L C G - Y I C L T V H I H - K F L M Q F Y V D N N I F V - Q C T Y T E N F - C N F M W . . . . . . 64430 TATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGGCATAAATGATGATTC Y I A F I E Y P N D Y E I T W H K - - F I S H S L S T P M I M R S L G I N D D S I Y R I H - V P Q - L - D H L A - M M I . . . . . . 64370 AGTTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAA S L I S K E G - R V S W - - N S I L V Q V - S Q K K D E E F L G D E T L S W C N Q F D L K R R M K S F L V M K L Y L G A . . . . . . 64310 TCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATT S G H - C I L L T I F D Q I F V L Q - I Q G T S A S Y - Q Y L T R Y L F C S K F I R A L V H L T N N I - P D I C F A V N . . . . . . 64250 TACTGGCAAGATTCAGTTTCTCCCCGATAAAAGGACATTGAAATGGTGTTGAGCACATGA Y W Q D S V S P R - K D I E M V L S T - T G K I Q F L P D K R T L K W C - A H D L L A R F S F S P I K G H - N G V E H M . . . . . . 64190 TTGAATATCCTCGAAGGACCATAGTTATGTGTTTATTCTATCCCGAGGAATCCAAGACAA L N I L E G P - L C V Y S I P R N P R Q - I S S K D H S Y V F I L S R G I Q D K I E Y P R R T I V M C L F Y P E E S K T . . . . 64130 AATTGATTGATTACGCAGATGCAGAATATTTA N - L I T Q M Q N I I D - L R R C R I F K L I D Y A D A E Y L Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-9_AGS-4_PPS_1 (65278 65081) (frame '2'; 195 bp, 65 residues) 1 NSLKKEGAND QYGHDNEASA IKEHIDITIH KILKKVQVPE IMKNEEISIS YVLLESISNN 61 RRRYL- 3-phase translation of AGS-4 (+strand): . . . . . . 64099 TAAATATTCTGCATCTGCGTAATCAATCAATTTTGTCTTGGATTCCTCGGGATAGAATAA - I F C I C V I N Q F C L G F L G I E - K Y S A S A - S I N F V L D S S G - N K N I L H L R N Q S I L S W I P R D R I . . . . . . 64159 ACACATAACTATGGTCCTTCGAGGATATTCAATCATGTGCTCAACACCATTTCAATGTCC T H N Y G P S R I F N H V L N T I S M S H I T M V L R G Y S I M C S T P F Q C P N T - L W S F E D I Q S C A Q H H F N V . . . . . . 64219 TTTTATCGGGGAGAAACTGAATCTTGCCAGTAAATTTACTGCAAAACAAATATCTGGTCA F Y R G E T E S C Q - I Y C K T N I W S F I G E K L N L A S K F T A K Q I S G Q L L S G R N - I L P V N L L Q N K Y L V . . . . . . 64279 AATATTGTTAGTAAGATGCACTAGTGCCCTGATTGCACCAAGATAGAGTTTCATCACCAA N I V S K M H - C P D C T K I E F H H Q I L L V R C T S A L I A P R - S F I T K K Y C - - D A L V P - L H Q D R V S S P . . . . . . 64339 GAAACTCTTCATCCTTCTTTTGAGATCAAACTGAATCATCATTTATGCCAAGTGATCTCA E T L H P S F E I K L N H H L C Q V I S K L F I L L L R S N - I I I Y A K - S H R N S S S F F - D Q T E S S F M P S D L . . . . . . 64399 TAATCATTGGGGTACTCAATGAATGCGATATATCCACATAAAATTGCATCAAAAATTTTC - S L G Y S M N A I Y P H K I A S K I F N H W G T Q - M R Y I H I K L H Q K F S I I I G V L N E C D I S T - N C I K N F . . . . . . 64459 AGTGTATGTGCACTGTTAGACAAATATATTATTTGTCAAATTAACAATCTGTAGGTCAAG S V C A L L D K Y I I C Q I N N L - V K V Y V H C - T N I L F V K L T I C R S R Q C M C T V R Q I Y Y L S N - Q S V G Q . . . . . . 64519 ACAAAATTTTGTCTTACCAAGACCTTTTCATAAAAATACAAGGACAATTAGGATCATTCT T K F C L T K T F S - K Y K D N - D H S Q N F V L P R P F H K N T R T I R I I L D K I L S Y Q D L F I K I Q G Q L G S F . . . . . . 64579 TTTGTACCCTTTTTCTTCCTTGACTATTTCAATCCATATAAGGATTCTTGAAGCTTTATT F V P F F F L D Y F N P Y K D S - S F I L Y P F S S L T I S I H I R I L E A L L F C T L F L P - L F Q S I - G F L K L Y . . . . . . 64639 GGAAAAGTTTCTTTCAAACTCTTATATGCTTCAGACACCTCGATTGTTTCAAGGATTTTC G K V S F K L L Y A S D T S I V S R I F E K F L S N S Y M L Q T P R L F Q G F S W K S F F Q T L I C F R H L D C F K D F . . . . . . 64699 ATATAACATTCATTGTCTAGCTAGACATTAAAATTATTCATTTACATGCATTCAAGTTTT I - H S L S S - T L K L F I Y M H S S F Y N I H C L A R H - N Y S F T C I Q V F H I T F I V - L D I K I I H L H A F K F . . . . . . 64759 CATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCAC H M L P D Q N K P H F I H Q R R K H L H I C C Q I K T N L I S S T K G E N I S T S Y V A R S K Q T S F H P P K E K T S P . . . . . . 64819 TAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAATCGTATTTGATATC - C Q D F C D K P L C P K A Q I V F D I N V R I F A I N L Y A P R H K S Y L I S L M S G F L R - T F M P Q G T N R I - Y . . . . . . 64879 TTACAGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTT L Q L Y Y R I I I Y L Y P T D I I P - F Y S Y T I A - - F I C T P L T L Y L D L L T V I L S H N N L F V P H - H Y T L I . . . . . . 64939 ATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGC M D Y Q S K M S L F - V K Q N I L E L C W T T S P K C H F S K - N K I Y L N C A Y G L P V Q N V T F L S E T K Y T - I V . . . . . . 64999 ATTTTACTTGGCCAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATTA I L L G Q P F I C S H Y M T D L N S R L F Y L A N H L S V H T I - Q I - I Q D Y H F T W P T I Y L F T L Y D R F E F K I . . . . . . 65059 TATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCA Y H - A L P H I K D T V D G Y L I S I P I I E R Y L I S K I P S T V I - Y R F Q I S L S A T S Y Q R Y R R R L F D I D S . . . . . . 65119 ACAAGACATAACTTATCGAGATCTCTTCATTTTTCATTATTTCAGGTACCTGAACCTTTT T R H N L S R S L H F S L F Q V P E P F Q D I T Y R D L F I F H Y F R Y L N L F N K T - L I E I S S F F I I S G T - T F . . . . . . 65179 TCAAGATTTTATGAATTGTTATGTCAATGTGCTCTTTTATAGCACTTGCCTCATTATCAT S R F Y E L L C Q C A L L - H L P H Y H Q D F M N C Y V N V L F Y S T C L I I M F K I L - I V M S M C S F I A L A S L S . . . . . . 65239 GACCATATTGATCATTTGCTCCTTCCTTCTTCAAGGAATTTTATATTTGGAATTGATTGG D H I D H L L L P S S R N F I F G I D W T I L I I C S F L L Q G I L Y L E L I G - P Y - S F A P S F F K E F Y I W N - L . . . . 65299 TCTATTACGCTTCCGGCGTATCATAGACTCTG S I T L P A Y H R L L L R F R R I I D S V Y Y A S G V S - T L Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1+_PGL-9_AGS-4_PPS_1 (64478 64729) (frame '2'; 249 bp, 83 residues) 1 TNILFVKLTI CRSRQNFVLP RPFHKNTRTI RIILLYPFSS LTISIHIRIL EALLEKFLSN 61 SYMLQTPRLF QGFSYNIHCL ARH- >C04HBa0077O05.1+_PGL-9_AGS-4_PPS_2 (65108 65329) (frame '2'; 222 bp, 74 residues) 1 YRFQQDITYR DLFIFHYFRY LNLFQDFMNC YVNVLFYSTC LIIMTILIIC SFLLQGILYL 61 ELIGLLRFRR IIDS PGL 10 (+ strand): 66707 71559 AGS-1 (66707 67539,69283 69298,71520 71559) SCR (e 0.932 d 0.000 a 0.000,e 0.750 d 0.855 a 0.000,e 0.757) Exon 1 66707 67539 ( 833 n); score: 0.932 Intron 1 67540 69282 (1743 n); Pd: 0.000 Pa: 0.000 Exon 2 69283 69298 ( 16 n); score: 0.750 Intron 2 69299 71519 (2221 n); Pd: 0.855 Pa: 0.000 Exon 3 71520 71559 ( 40 n); score: 0.757 PGS (66707 67345) SGN-E542836+ PGS (66733 67074) SGN-E204533+ PGS (66762 67519) SGN-E354965- PGS (67452 67539,69283 69298,71520 71559) SGN-E260587+ PGS (67452 67539,69283 69298,71520 71559) SGN-E260602+ PGS (67452 67539,69283 69298,71520 71559) SGN-E263280+ PGS (67452 67539,69283 69298,71520 71559) SGN-E261435+ PGS (67452 67539,69283 69298,71520 71556) SGN-E250041+ PGS (67452 67539,69283 69298,71520 71556) SGN-E259955+ PGS (67452 67539,69283 69298,71520 71556) SGN-E260221+ PGS (67452 67539,69283 69298,71520 71556) SGN-E255405+ PGS (67452 67539,69283 69298,71520 71556) SGN-E375221+ PGS (67452 67539,69283 69298,71520 71556) SGN-E251501+ PGS (67452 67539,69283 69298,71520 71556) SGN-E256408+ PGS (67452 67539) SGN-E261191+ 3-phase translation of AGS-1 (+strand): . . . . . . 66707 TTTATTTCCTCTCAAATCTCCCGTAGAGATGAGAAGTGACATGTATCCAACCCATAATTA F I S S Q I S R R D E K - H V S N P - L L F P L K S P V E M R S D M Y P T H N Y Y F L S N L P - R - E V T C I Q P I I . . . . . . 66767 TTTTATCACATCTGGACCCATTCTCTTATAGAATGATCGAGCATTCACGATACTCATTAC F Y H I W T H S L I E - S S I H D T H Y F I T S G P I L L - N D R A F T I L I T I L S H L D P F S Y R M I E H S R Y S L . . . . . . 66827 AAGTCACATTCTCTTCAAGGATTGGACTAATTATTTATATGTACTTCATAAATTTGCATT K S H S L Q G L D - L F I C T S - I C I S H I L F K D W T N Y L Y V L H K F A L Q V T F S S R I G L I I Y M Y F I N L H . . . . . . 66887 ATAAGCACATTGTCATGACTTTAAAATTCATCATATTTCCATGACACACCTCAACATCAC I S T L S - L - N S S Y F H D T P Q H H - A H C H D F K I H H I S M T H L N I T Y K H I V M T L K F I I F P - H T S T S . . . . . . 66947 TTTGAAAGATTAAGTGTACCATCACTTTATCTTGTATCATGATAGAGGATTTATAAATTT F E R L S V P S L Y L V S - - R I Y K F L K D - V Y H H F I L Y H D R G F I N L L - K I K C T I T L S C I M I E D L - I . . . . . . 67007 GTCAAATTATTGGGTCGACAACATTCACAAGTCTAATGACCTTTCATACCATTTTGATAA V K L L G R Q H S Q V - - P F I P F - - S N Y W V D N I H K S N D L S Y H F D N C Q I I G S T T F T S L M T F H T I L I . . . . . . 67067 TAAAAATTGCCTTCACATTTTGAAGGACTATTTGAAGAACTCATAATGTTCCTTTTATCA - K L P S H F E G L F E E L I M F L L S K N C L H I L K D Y L K N S - C S F Y H I K I A F T F - R T I - R T H N V P F I . . . . . . 67127 TTACCACAATGATGACTATTATAATTATGTCCCTTCACGCCCTTATTCATATCATTAATC L P Q - - L L - L C P F T P L F I S L I Y H N D D Y Y N Y V P S R P Y S Y H - S I T T M M T I I I M S L H A L I H I I N . . . . . . 67187 ATTTGTCATCTTTCAGACTAACATTCACTGCTACCACATTCATATGATTGAATGGAGCAA I C H L S D - H S L L P H S Y D - M E Q F V I F Q T N I H C Y H I H M I E W S K H L S S F R L T F T A T T F I - L N G A . . . . . . 67247 GTTAACAGGCGGATATCAGAGTTATTACATGTTGCTACCACATTCTTTTCAAGGAATGAA V N R R I S E L L H V A T T F F S R N E L T G G Y Q S Y Y M L L P H S F Q G M K S - Q A D I R V I T C C Y H I L F K E - . . . . . . 67307 GCAAATTCAATAAAACGAATTTCAAGACTTTTCATCAAAGCCTAGTCATCATTATATCAT A N S I K R I S R L F I K A - S S L Y H Q I Q - N E F Q D F S S K P S H H Y I I S K F N K T N F K T F H Q S L V I I I S . . . . . . 67367 CATTATGGTGCATTGACTCAAACTCAATGTCTTATCCATATAAGGCGTTTTACGCCATAA H Y G A L T Q T Q C L I H I R R F T P - I M V H - L K L N V L S I - G V L R H N S L W C I D S N S M S Y P Y K A F Y A I . . . . . . 67427 TTCTATGAGACTTGAACCCAATCACGGTGCATCGAAACTCAAATTGATGTCTTACCCTTT F Y E T - T Q S R C I E T Q I D V L P F S M R L E P N H G A S K L K L M S Y P F I L - D L N P I T V H R N S N - C L T L . . . . . . : 67487 TGGTGCGATAGAACTTGAATCTATCGTCTTATCCTCAAATATTTTTCATTATG : AGTGCAA W C D R T - I Y R L I L K Y F S L - : V Q G A I E L E S I V L S S N I F H Y : E C K L V R - N L N L S S Y P Q I F F I M : S A . : . . . . 69290 ACAAATGAG : TCTTTTTTAAATTAATTTAGACACCTTCTTTTCAGTTCTA T N E : S F L N - F R H L L F S S Q M S : L F - I N L D T F F S V L N K - : V F F K L I - T P S F Q F Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (67352 67452,67529 67633,69290 69298,71520 71556) SCR (e 0.822 d 0.000 a 0.000,e 0.821 d 0.580 a 0.000,e 0.889 d 0.855 a 0.000,e 0.757) Exon 1 67352 67452 ( 101 n); score: 0.822 Intron 1 67453 67528 ( 76 n); Pd: 0.000 Pa: 0.000 Exon 2 67529 67633 ( 105 n); score: 0.821 Intron 2 67634 69289 (1656 n); Pd: 0.580 Pa: 0.000 Exon 3 69290 69298 ( 9 n); score: 0.889 Intron 3 69299 71519 (2221 n); Pd: 0.855 Pa: 0.000 Exon 4 71520 71556 ( 37 n); score: 0.757 PGS (67352 67452,67529 67633,69290 69298,71520 71556) SGN-E248730+ PGS (67352 67452,67529 67612) SGN-E254688+ PGS (67352 67452,67529 67612) SGN-E250127+ 3-phase translation of AGS-2 (+strand): . . . . . . 67352 TCATCATTATATCATCATTATGGTGCATTGACTCAAACTCAATGTCTTATCCATATAAGG S S L Y H H Y G A L T Q T Q C L I H I R H H Y I I I M V H - L K L N V L S I - G I I I S S L W C I D S N S M S Y P Y K . . . . . : . 67412 CGTTTTACGCCATAATTCTATGAGACTTGAACCCAATCACG : TTTTCATTATGGTGCATCC R F T P - F Y E T - T Q S R : F H Y G A S V L R H N S M R L E P N H : V F I M V H P A F Y A I I L - D L N P I T : F S L W C I . . . . . . 67548 GGACTTTAACCTGATGTCTTACCCTTTTGGTGCGATGAAACTTGAATTCATCGTCTTACC G L - P D V L P F W C D E T - I H R L T D F N L M S Y P F G A M K L E F I V L P R T L T - C L T L L V R - N L N S S S Y . . . : . : . . 67608 CTTAACCAACGGTATAATAAATCGAA : ACAAATGAG : TCTTTTTTAAATTAATTTAGACACC L N Q R Y N K S K : Q M S : L F - I N L D T L T N G I I N R : N K - : V F F K L I - T P P - P T V - - I E : T N E : S F L N - F R H . . 71545 TTCTTTTCAGTT F F S V S F Q L L F S Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (67580 67965) SCR (e 0.929) Exon 1 67580 67965 ( 386 n); score: 0.929 PGS (67580 67965) SGN-E338242- PGS (67620 67965) SGN-E548779- PGS (67659 67955) SGN-E301830- 3-phase translation of AGS-3 (+strand): . . . . . . 67580 CGATGAAACTTGAATTCATCGTCTTACCCTTAACCAACGGTATAATAAATCGAAGTACAA R - N L N S S S Y P - P T V - - I E V Q D E T - I H R L T L N Q R Y N K S K Y N M K L E F I V L P L T N G I I N R S T . . . . . . 67640 CATGACTCATCCTTTGAGTCTTTCAAAACAATCAAAATAACATTCAAATTCATGCTATTA H D S S F E S F K T I K I T F K F M L L M T H P L S L S K Q S K - H S N S C Y - T - L I L - V F Q N N Q N N I Q I H A I . . . . . . 67700 AAATTTTATACCTTCTTCTATTTAAGAAATTTTGTATAGCATGTCATATTCAACCAATAG K F Y T F F Y L R N F V - H V I F N Q - N F I P S S I - E I L Y S M S Y S T N S K I L Y L L L F K K F C I A C H I Q P I . . . . . . 67760 TAGTATATGTCTTCGATTCCTGATAATTGTTAGTGACTGAATACTATTTTATTCTAAATC - Y M S S I P D N C - - L N T I L F - I S I C L R F L I I V S D - I L F Y S K S V V Y V F D S - - L L V T E Y Y F I L N . . . . . . 67820 ATAAAAATATTCTAGAAAATACATACCTGATTTTATGCATATAATACCTTGATTCTTATA I K I F - K I H T - F Y A Y N T L I L I - K Y S R K Y I P D F M H I I P - F L - H K N I L E N T Y L I L C I - Y L D S Y . . . . . . 67880 ACGAGATCAACCAAAAACATGAGTTAAAGAAAAAGTAAAACTCAATCTTAATTGGCTAGA T R S T K N M S - R K S K T Q S - L A R R D Q P K T - V K E K V K L N L N W L E N E I N Q K H E L K K K - N S I L I G - . . . 67940 GACTCGTGCTGATAACGTGTTATAAA D S C - - R V I T R A D N V L - R L V L I T C Y K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (-strand): . . . . . . 67965 TTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTACTTTTTCTT F I T R Y Q H E S L A N - D - V L L F L L - H V I S T S L - P I K I E F Y F F F Y N T L S A R V S S Q L R L S F T F S . . . . . . 67905 TAACTCATGTTTTTGGTTGATCTCGTTATAAGAATCAAGGTATTATATGCATAAAATCAG - L M F L V D L V I R I K V L Y A - N Q N S C F W L I S L - E S R Y Y M H K I R L T H V F G - S R Y K N Q G I I C I K S . . . . . . 67845 GTATGTATTTTCTAGAATATTTTTATGATTTAGAATAAAATAGTATTCAGTCACTAACAA V C I F - N I F M I - N K I V F S H - Q Y V F S R I F L - F R I K - Y S V T N N G M Y F L E Y F Y D L E - N S I Q S L T . . . . . . 67785 TTATCAGGAATCGAAGACATATACTACTATTGGTTGAATATGACATGCTATACAAAATTT L S G I E D I Y Y Y W L N M T C Y T K F Y Q E S K T Y T T I G - I - H A I Q N F I I R N R R H I L L L V E Y D M L Y K I . . . . . . 67725 CTTAAATAGAAGAAGGTATAAAATTTTAATAGCATGAATTTGAATGTTATTTTGATTGTT L K - K K V - N F N S M N L N V I L I V L N R R R Y K I L I A - I - M L F - L F S - I E E G I K F - - H E F E C Y F D C . . . . . . 67665 TTGAAAGACTCAAAGGATGAGTCATGTTGTACTTCGATTTATTATACCGTTGGTTAAGGG L K D S K D E S C C T S I Y Y T V G - G - K T Q R M S H V V L R F I I P L V K G F E R L K G - V M L Y F D L L Y R W L R . . . 67605 TAAGACGATGAATTCAAGTTTCATCG - D D E F K F H K T M N S S F I V R R - I Q V S S Maximal non-overlapping open reading frames (>= 64 codons): none PGL 11 (+ strand): 79083 84391 AGS-1 (79083 79107,80052 80062,81093 81593,83889 83926) SCR (e 0.720 d 0.498 a 0.976,e 0.545 d 0.808 a 0.000,e 0.896 d 0.512 a 0.000,e 0.711) Exon 1 79083 79107 ( 25 n); score: 0.720 Intron 1 79108 80051 ( 944 n); Pd: 0.498 Pa: 0.976 Exon 2 80052 80062 ( 11 n); score: 0.545 Intron 2 80063 81092 (1030 n); Pd: 0.808 Pa: 0.000 Exon 3 81093 81593 ( 501 n); score: 0.896 Intron 3 81594 83888 (2295 n); Pd: 0.512 Pa: 0.000 Exon 4 83889 83926 ( 38 n); score: 0.711 PGS (79083 79107,80052 80062,81093 81417) SGN-E389613+ PGS (81088 81387) SGN-E271645+ PGS (81166 81607) SGN-E211090- PGS (81166 81387) SGN-E370622+ PGS (81172 81606) SGN-E206285+ PGS (81172 81433) SGN-E206496+ PGS (81187 81607) SGN-E205772- PGS (81257 81593,83889 83926) SGN-E243194+ 3-phase translation of AGS-1 (+strand): . . . : . : . . 79083 CCCAACAATATTAGATGGAGCTAAA : ATCCCCTCAAC : TCTAACCTGGTTCAATCATCGATT P N N I R W S - : N P L N : S N L V Q S S I P T I L D G A K : I P S T : L T W F N H R L Q Q Y - M E L K : S P Q : L - P G S I I D . . . . . . 81117 ATCGAATCACTAACCTGACTCCATCATTGAATCTGACGCTGATACCACTTGTTAGGATCG I E S L T - L H H - I - R - Y H L L G S S N H - P D S I I E S D A D T T C - D R Y R I T N L T P S L N L T L I P L V R I . . . . . . 81177 AAAATAAGTAGGTGTAAATGCGGAAGCTAGCAAAGCAAATCTCGAAAGATCACGAGTAAG K I S R C K C G S - Q S K S R K I T S K K - V G V N A E A S K A N L E R S R V R E N K - V - M R K L A K Q I S K D H E - . . . . . . 81237 AAGACAACGAGAAATATACCAAAAGACACAAAGATTTAACGTGGTTCAGTCAATCGACCT K T T R N I P K D T K I - R G S V N R P R Q R E I Y Q K T Q R F N V V Q S I D L E D N E K Y T K R H K D L T W F S Q S T . . . . . . 81297 ACATCCACAAAGGAGATGAGCAATTCACTATAAATATGATAGTACAATATACAGAGAGAA T S T K E M S N S L - I - - Y N I Q R E H P Q R R - A I H Y K Y D S T I Y R E K Y I H K G D E Q F T I N M I V Q Y T E R . . . . . . 81357 ACAACCTCAACCAATTCACTCGTAATATATGGGAGGTTCACACAAGTCATAACGTATCAA T T S T N S L V I Y G R F T Q V I T Y Q Q P Q P I H S - Y M G G S H K S - R I K N N L N Q F T R N I W E V H T S H N V S . . . . . . 81417 GCTTGTGAACCATAAATTCTCCCCCTAACCAAAACTCTCAAAGCCTTTAAGAATATATTG A C E P - I L P L T K T L K A F K N I L L V N H K F S P - P K L S K P L R I Y C S L - T I N S P P N Q N S Q S L - E Y I . . . . . . 81477 TGAATGTTGATTAAGTTAGAAATAACATGTCTCTCTTTATAAAGTCCTAAACCTTTTCCT - M L I K L E I T C L S L - S P K P F P E C - L S - K - H V S L Y K V L N L F L V N V D - V R N N M S L F I K S - T F S . . . . . . : 81537 ACCGGAAAAAGGATTAGTCAATCCAAAACATTTTCCTAAAAGGAAAACCTATGTATG : CAA T G K R I S Q S K T F S - K E N L C M : Q P E K G L V N P K H F P K R K T Y V C : N Y R K K D - S I Q N I F L K G K P M Y : A . . . . 83892 TCCAAACTCTTTGGACTCAACAAAGAAAGATTATT S K L F G L N K E R L P N S L D S T K K D Y I Q T L W T Q Q R K I I Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (81025 81048,81166 81391,81528 81607,81720 81771,82129 82149,84364 84391) SCR (e 0.750 d 0.000 a 0.000,e 0.880 d 0.131 a 0.000,e 0.856 d 0.813 a 0.000,e 0.635 d 0.000 a 0.998,e 0.571 d 0.000 a 0.000,e 0.714) Exon 1 81025 81048 ( 24 n); score: 0.750 Intron 1 81049 81165 ( 117 n); Pd: 0.000 Pa: 0.000 Exon 2 81166 81391 ( 226 n); score: 0.880 Intron 2 81392 81527 ( 136 n); Pd: 0.131 Pa: 0.000 Exon 3 81528 81607 ( 80 n); score: 0.856 Intron 3 81608 81719 ( 112 n); Pd: 0.813 Pa: 0.000 Exon 4 81720 81771 ( 52 n); score: 0.635 Intron 4 81772 82128 ( 357 n); Pd: 0.000 Pa: 0.998 Exon 5 82129 82149 ( 21 n); score: 0.571 Intron 5 82150 84363 (2214 n); Pd: 0.000 Pa: 0.000 Exon 6 84364 84391 ( 28 n); score: 0.714 PGS (81025 81048,81166 81282) SGN-E544264- PGS (81175 81391,81528 81607,81720 81771,82129 82149,84364 84391) SGN-E543331- 3-phase translation of AGS-2 (+strand): . . . : . . . 81025 GATCGAAAATAAGTAGGTGTGTAA : TGTTAGGATCGAAAATAAGTAGGTGTAAATGCGGAA D R K - V G V - : C - D R K - V G V N A E I E N K - V C N : V R I E N K - V - M R K S K I S R C V : M L G S K I S R C K C G . . . . . . 81202 GCTAGCAAAGCAAATCTCGAAAGATCACGAGTAAGAAGACAACGAGAAATATACCAAAAG A S K A N L E R S R V R R Q R E I Y Q K L A K Q I S K D H E - E D N E K Y T K R S - Q S K S R K I T S K K T T R N I P K . . . . . . 81262 ACACAAAGATTTAACGTGGTTCAGTCAATCGACCTACATCCACAAAGGAGATGAGCAATT T Q R F N V V Q S I D L H P Q R R - A I H K D L T W F S Q S T Y I H K G D E Q F D T K I - R G S V N R P T S T K E M S N . . . . . . 81322 CACTATAAATATGATAGTACAATATACAGAGAGAAACAACCTCAACCAATTCACTCGTAA H Y K Y D S T I Y R E K Q P Q P I H S - T I N M I V Q Y T E R N N L N Q F T R N S L - I - - Y N I Q R E T T S T N S L V . : . . . . . 81382 TATATGGGAG : CCTTTTCCTACCGGAAAAAGGATTAGTCAATCCAAAACATTTTCCTAAAA Y M G : A F S Y R K K D - S I Q N I F L K I W E : P F P T G K R I S Q S K T F S - K I Y G S : L F L P E K G L V N P K H F P K . . . : . . . 81578 GGAAAACCTATGTATGGTAAGAAGTTTAGG : AAAAAATGACTTTTAAAATTAAAGTTATGA G K P M Y G K K F R : K K - L L K L K L - E N L C M V R S L G : K N D F - N - S Y D R K T Y V W - E V - : E K M T F K I K V M . . . : . . : . 81750 TTAAACAAATTACAATTTCAGA : AGGTGGATCTAGGATTTAAAG : TCATTAATTTATTCACA L N K L Q F Q : K V D L G F K : V I N L F T - T N Y N F R : R W I - D L K : S L I Y S H I K Q I T I S E : G G S R I - S : H - F I H . . 84381 TTTACGATTGA F T I L R L I Y D - Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1+_PGL-11_AGS-2_PPS_1 (81236 81391,81528 81575) (frame '2'; 201 bp, 67 residues) 1 EDNEKYTKRH KDLTWFSQST YIHKGDEQFT INMIVQYTER NNLNQFTRNI WEPFPTGKRI 61 SQSKTFS- PGL 12 (- strand): 87189 86232 AGS-1 (87189 87167,87062 87010,86908 86830,86734 86232) SCR (e 1.000 d 0.961 a 0.827,e 1.000 d 0.994 a 0.997,e 1.000 d 0.993 a 0.714,e 0.998) Exon 1 87189 87167 ( 23 n); score: 1.000 Intron 1 87166 87063 ( 104 n); Pd: 0.961 Pa: 0.827 Exon 2 87062 87010 ( 53 n); score: 1.000 Intron 2 87009 86909 ( 101 n); Pd: 0.994 Pa: 0.997 Exon 3 86908 86830 ( 79 n); score: 1.000 Intron 3 86829 86735 ( 95 n); Pd: 0.993 Pa: 0.714 Exon 4 86734 86232 ( 503 n); score: 0.998 PGS (87189 87167,87062 87010,86908 86830,86734 86232) SGN-E540407- PGS (86681 86232) SGN-E288286- 3-phase translation of AGS-1 (-strand): . . . : . . . 87189 GAGAACAACAACGATTAGGAATG : GCACGCTTATTTTTTCACAAGCCACGGTTTGGAATCC E N N N D - E W : H A Y F F T S H G L E S R T T T I R N : G T L I F S Q A T V W N P E Q Q R L G M : A R L F F H K P R F G I . . : . . . . 87025 TTGACGAATGTACAAA : TGCTACTAGTGTTGATGTTGAAGAACACCTGTATAGGCTTGCTA L T N V Q : M L L V L M L K N T C I G L L - R M Y K : C Y - C - C - R T P V - A C - L D E C T N : A T S V D V E E H L Y R L A . . . . : . . 86864 AGGATGCTGGCATTACTGTTGTTACATCCTCACAG : CGCCCTGCTTTAATACCTTTCCATT R M L A L L L L H P H S : A L L - Y L S I G C W H Y C C Y I L T : A P C F N T F P F K D A G I T V V T S S Q : R P A L I P F H . . . . . . 86709 CTGTGGAATTACGGTTGATTGATGGTGAAGGCAAGTGGCAGCTGCGTTCAATTAAGATGG L W N Y G - L M V K A S G S C V Q L R W C G I T V D - W - R Q V A A A F N - D G S V E L R L I D G E G K W Q L R S I K M . . . . . . 86649 ATGAGGAGGGGGAAGACGAACCAAATGAATACACACAACAATTGTGAGTACGATGATGTA M R R G K T N Q M N T H N N C E Y D D V - G G G R R T K - I H T T I V S T M M Y D E E G E D E P N E Y T Q Q L - V R - C . . . . . . 86589 TTCCAATGTTGTGAAAACGTTCATAGAGCCAAAAATAATGAATGAATTATGAATGTAATA F Q C C E N V H R A K N N E - I M N V I S N V V K T F I E P K I M N E L - M - - I P M L - K R S - S Q K - - M N Y E C N . . . . . . 86529 GTTTGCAGTTAGATTGAGGGTAGGAAACTATATAGTTAGGGTATACAAAAACTATTTTAA V C S - I E G R K L Y S - G I Q K L F - F A V R L R V G N Y I V R V Y K N Y F K S L Q L D - G - E T I - L G Y T K T I L . . . . . . 86469 GTTGTTTCTTGTAATATTTCATATAGTTAACTGTGTATAGCGCCTAGTTCCCGTCGTTGT V V S C N I S Y S - L C I A P S S R R C L F L V I F H I V N C V - R L V P V V V S C F L - Y F I - L T V Y S A - F P S L . . . . . . 86409 AAAAGGTTTAGGCATAATCTTTCCGGTCAGCTCTCCGTGAATAAAAATGGCAGGTAGAAA K R F R H N L S G Q L S V N K N G R - K K G L G I I F P V S S P - I K M A G R K - K V - A - S F R S A L R E - K W Q V E . . . . . . 86349 AGGAGGCTGACAGATTAATTTACTTATATTATCTTCTACATTTTACAATGTATTTTGATG R R L T D - F T Y I I F Y I L Q C I L M G G - Q I N L L I L S S T F Y N V F - - K E A D R L I Y L Y Y L L H F T M Y F D . . . . . . 86289 ATATTTTTCTGTTTAAATATACCAAAAATTTAATGGAGTGTATATTTTTGCCCTCTCT I F F C L N I P K I - W S V Y F C P L Y F S V - I Y Q K F N G V Y I F A L S D I F L F K Y T K N L M E C I F L P S Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-12_AGS-1_PPS_1 (87187 87167,87062 87010,86908 86830,86734 86603) (frame '0'; 282 bp, 94 residues) 1 EQQRLGMARL FFHKPRFGIL DECTNATSVD VEEHLYRLAK DAGITVVTSS QRPALIPFHS 61 VELRLIDGEG KWQLRSIKMD EEGEDEPNEY TQQL- PGL 13 (- strand): 126482 123119 AGS-1 (126482 126039,124384 124226,123321 123119) SCR (e 0.900 d 0.000 a 0.000,e 0.821 d 0.000 a 0.026,e 0.704) Exon 1 126482 126039 ( 444 n); score: 0.900 Intron 1 126038 124385 (1654 n); Pd: 0.000 Pa: 0.000 Exon 2 124384 124226 ( 159 n); score: 0.821 Intron 2 124225 123322 ( 904 n); Pd: 0.000 Pa: 0.026 Exon 3 123321 123119 ( 203 n); score: 0.704 PGS (126176 126039,124384 124226,123321 123119) SGN-E332610+ PGS (126176 126039,124384 124226,123321 123119) SGN-E334018+ PGS (126482 126112) SGN-E247860+ 3-phase translation of AGS-1 (-strand): . . . . . . 126482 TATATATATATGAATTAGATCTGCACCGTGACAGTGCTATCTACAATTACAAAAACTCAA Y I Y M N - I C T V T V L S T I T K T Q I Y I - I R S A P - Q C Y L Q L Q K L N Y I Y E L D L H R D S A I Y N Y K N S . . . . . . 126422 CCATGCTTAGGACTACAGCTTCACAAAGAACCTATCATATCAACTAGTGATTCAGTCTCC P C L G L Q L H K E P I I S T S D S V S H A - D Y S F T K N L S Y Q L V I Q S P T M L R T T A S Q R T Y H I N - - F S L . . . . . . 126362 TCTACATAGTTTTCTTTACACCAAAAAAGGAACAAAAGAATACAATTCATCTTGACTTTC S T - F S L H Q K R N K R I Q F I L T F L H S F L Y T K K G T K E Y N S S - L S L Y I V F F T P K K E Q K N T I H L D F . . . . . . 126302 TGCACAGGATTGCTTTTGTCTTAAAAAATTCTGTAGTTCCTCTCTTTCCAAATTGTCCAC C T G L L L S - K I L - F L S F Q I V H A Q D C F C L K K F C S S S L S K L S T L H R I A F V L K N S V V P L F P N C P . . . . . . 126242 CATATACAAGCTGGGACAAGTTCCCACCACTTCTTTTGTCCCACTGCACCTCCATTTTAG H I Q A G T S S H H F F C P T A P P F - I Y K L G Q V P T T S F V P L H L H F S P Y T S W D K F P P L L L S H C T S I L . . . . . . 126182 TTCCAACATTTCAATGAATCACAACTTGTTGCTGGCGTAGACCATCTTAGTCCTATCAAG F Q H F N E S Q L V A G V D H L S P I K S N I S M N H N L L L A - T I L V L S S V P T F Q - I T T C C W R R P S - S Y Q . . . . . . 126122 TACAAAAAAAGTTGCCACAATTGTCCAGTTATGGGACAATGTAGAAACAGATGGCAATTG Y K K S C H N C P V M G Q C R N R W Q L T K K V A T I V Q L W D N V E T D G N C V Q K K L P Q L S S Y G T M - K Q M A I . . . : . . . 126062 TTTTCTCCGGCTGCACCACACATA : AAGTATCTAGAACACAGTTGGAATCCCCTTCTTTGA F S P A A P H I : K Y L E H S W N P L L - F L R L H H T - : S I - N T V G I P F F E V F S G C T T H : K V S R T Q L E S P S L . . . . . . 124348 AGTTTATCCTGTGTGAGGCAAGTCTCTCTTGGTATTAGCCAAGAAAAGTATACCACCCTA S L S C V R Q V S L G I S Q E K Y T T L V Y P V - G K S L L V L A K K S I P P - K F I L C E A S L S W Y - P R K V Y H P . . . . . . 124288 AAAGGAGCCTTTATCTCCAAATGGATCTCCATGGTCACTGAGTTTATTAGCTGAGTTTGT K G A F I S K W I S M V T E F I S - V C K E P L S P N G S P W S L S L L A E F V K R S L Y L Q M D L H G H - V Y - L S L . : . . . . . 124228 TAG : ATGAGAACATCAACTCTTCGATTCTAATGATTCGTCAATTGTTTACTGGTGGGCTTC - : M R T S T L R F - - F V N C L L V G F R : - E H Q L F D S N D S S I V Y W W A S L : D E N I N S S I L M I R Q L F T G G L . . . . . . 123264 CATATAAGTTAATCTACAGTATTTTTGAACCCTTGGAATGATTCCAAGGTCTTTCAACAA H I S - S T V F L N P W N D S K V F Q Q I - V N L Q Y F - T L G M I P R S F N N P Y K L I Y S I F E P L E - F Q G L S T . . . . . . 123204 CTCTTTCCAGCTCCCAGTTATGCAGTAGCCTTCTAAAAGTAATATCCCATCCTTGTACTC L F P A P S Y A V A F - K - Y P I L V L S F Q L P V M Q - P S K S N I P S L Y S T L S S S Q L C S S L L K V I S H P C T . . . 123144 CTTTTGCTGATTCCAGACTAATATCT L L L I P D - Y F C - F Q T N I P F A D S R L I S Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-13_AGS-1_PPS_1 (126372 126166) (frame '0'; 204 bp, 68 residues) 1 FSLLYIVFFT PKKEQKNTIH LDFLHRIAFV LKNSVVPLFP NCPPYTSWDK FPPLLLSHCT 61 SILVPTFQ- PGL 14 (- strand): 127916 127528 AGS-1 (127916 127528) SCR (e 1.000) Exon 1 127916 127528 ( 389 n); score: 1.000 PGS (127916 127528) SGN-E337650+ 3-phase translation of AGS-1 (-strand): . . . . . . 127916 TGCATTGTGTCTTCATAATCCTGTGAACCGTCATGCCAAAAGCCTTTGGAGAAGAGCACA C I V S S - S C E P S C Q K P L E K S T A L C L H N P V N R H A K S L W R R A Q H C V F I I L - T V M P K A F G E E H . . . . . . 127856 GGCATATGACATGCTTGGTTTAGCTAAGGAGAGCTTATTAGATGCTATTCTGTTTATAAA G I - H A W F S - G E L I R C Y S V Y K A Y D M L G L A K E S L L D A I L F I N R H M T C L V - L R R A Y - M L F C L - . . . . . . 127796 TGAGTGTTCACAATCAAATGATCCTGATCTGTCTTTAAGGCAAAACAAGGTTCCTGATTA - V F T I K - S - S V F K A K Q G S - L E C S Q S N D P D L S L R Q N K V P D Y M S V H N Q M I L I C L - G K T R F L I . . . . . . 127736 TGCTGAGCGTTTGGTAAAAAAGCAGATGCGTGCAGCTTGGTTATTTAGAGAGGCTGCTAT C - A F G K K A D A C S L V I - R G C Y A E R L V K K Q M R A A W L F R E A A I M L S V W - K S R C V Q L G Y L E R L L . . . . . . 127676 TAAACATGGTGGAGTTCAATGTGAGGGTGATGCTGGAGACATGTGTGGCCAGGAAACTGA - T W W S S M - G - C W R H V W P G N - K H G G V Q C E G D A G D M C G Q E T D L N M V E F N V R V M L E T C V A R K L . . . . . . 127616 TGATTCAGAATGGGAGACAGCAAGTGAAAGTGAAATTGGAAATGAGGAGAGAGATGAAAT - F R M G D S K - K - N W K - G E R - N D S E W E T A S E S E I G N E E R D E I M I Q N G R Q Q V K V K L E M R R E M K . . . 127556 TGGCGATGATATTTGTGGATGGGAAAATG W R - Y L W M G K G D D I C G W E N L A M I F V D G K M Maximal non-overlapping open reading frames (>= 64 codons): >C04HBa0077O05.1-_PGL-14_AGS-1_PPS_1 (127915 127529) (frame '2'; 387 bp, 129 residues) 1 ALCLHNPVNR HAKSLWRRAQ AYDMLGLAKE SLLDAILFIN ECSQSNDPDL SLRQNKVPDY 61 AERLVKKQMR AAWLFREAAI KHGGVQCEGD AGDMCGQETD DSEWETASES EIGNEERDEI 121 GDDICGWEN 3-phase translation of AGS-1 (+strand): . . . . . . 127528 CATTTTCCCATCCACAAATATCATCGCCAATTTCATCTCTCTCCTCATTTCCAATTTCAC H F P I H K Y H R Q F H L S P H F Q F H I F P S T N I I A N F I S L L I S N F T F S H P Q I S S P I S S L S S F P I S . . . . . . 127588 TTTCACTTGCTGTCTCCCATTCTGAATCATCAGTTTCCTGGCCACACATGTCTCCAGCAT F H L L S P I L N H Q F P G H T C L Q H F T C C L P F - I I S F L A T H V S S I L S L A V S H S E S S V S W P H M S P A . . . . . . 127648 CACCCTCACATTGAACTCCACCATGTTTAATAGCAGCCTCTCTAAATAACCAAGCTGCAC H P H I E L H H V - - Q P L - I T K L H T L T L N S T M F N S S L S K - P S C T S P S H - T P P C L I A A S L N N Q A A . . . . . . 127708 GCATCTGCTTTTTTACCAAACGCTCAGCATAATCAGGAACCTTGTTTTGCCTTAAAGACA A S A F L P N A Q H N Q E P C F A L K T H L L F Y Q T L S I I R N L V L P - R Q R I C F F T K R S A - S G T L F C L K D . . . . . . 127768 GATCAGGATCATTTGATTGTGAACACTCATTTATAAACAGAATAGCATCTAATAAGCTCT D Q D H L I V N T H L - T E - H L I S S I R I I - L - T L I Y K Q N S I - - A L R S G S F D C E H S F I N R I A S N K L . . . . . . 127828 CCTTAGCTAAACCAAGCATGTCATATGCCTGTGCTCTTCTCCAAAGGCTTTTGGCATGAC P - L N Q A C H M P V L F S K G F W H D L S - T K H V I C L C S S P K A F G M T S L A K P S M S Y A C A L L Q R L L A - . . . 127888 GGTTCACAGGATTATGAAGACACAATGCA G S Q D Y E D T M V H R I M K T Q C R F T G L - R H N A Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Tue Jul 25 15:24:35 2006