<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 15:30:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7024" ref_strand="+" ref_description="SGN-M7024 C2_At1g71430 [cosii_markers]">
      <seq>aataacactcatttttcaaatatcttgctgagtctttaccgggtgccgctctgccgccgccagctgccgcttgttcattatagcatataggagatcatcagttgcttgcccttggttctgatatgcagtcaaacagcaaagatctgcttcacttggagactgaaggcttgtccttggaatcaaaacttctcttttgcactagtgatggcggatctcaatctctaaatttgaaacctgacgaccttcctgataacaagcctaacaagcctgaaatctcttctgtaccgagaagccaagttctaacaaaggtcaaggattttttgggagtatttttggaaaacaatagaaaagtggagcttgaagcaaagaagaatcctgagaaatatgatatcgaagctcttaccggtgaagaatctgaatacatagagatggacttaatgttgggtgttgctgaacttcacacacaggaggctgtatcagctgctgaatctgcaatagcaagttaccaaccagtaatcgatctggataccaatgatacgacagaatctgaagacactagcgatgaggatgacattgaggataccaacaaaagtgatgatgatgatgatgatgatgatgatggaggttcttctctaggaaaagaatctaagcttacagaaaaggattctcctaagaaagcattgaagaggaagcgacagcctgtaaatcgagctaacatagttgagctctcttagcgctaaggacattaattgtagcttatttttggtgagaaattcagaacatagttataagcgtgcttctcttccatgttcctataaaacttgttttagttctactctttattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0002G01-BY1cP/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0002G01.1" temp_strand="+" temp_description="C04HBa0002G01.1  CU459048.6 htgs_phase:3 submitted_to_sgn_as:C04HBa0002G01 sequenced_by:sanger upload_account_name:uk">
        <position start="65728" stop="69032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66028" g_stop="66110" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66111" i_stop="67965" i_length="1855">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67966" g_stop="68737" g_length="772"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="855" r_length="772" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0002G01.1" gen_strand="+" ref_id="SGN-M7024" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0002G01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66028" e_stop="66110"/>
          <exon e_start="67966" e_stop="68737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACACTCATTTTTCAAATATCTTGCTGAGTCTTTCCCGGCTGCCGCTCTGCCGCCGCCAGCTGCCGCTTGTTCATTATAGGTAAGTTTTGTCATTTATTTTCTCATAAGGAACAAATTAAATCTTCTGAAAGAACCCCAAGTATATACACGCAATAACTGAATTGAATCTAATTCGAAACGATATTTCTGCTTGTTCAAACCATGAATTCGAAGTAGTTAGAGAGGCTATAGTTGAGATGATAGTTACAGAAGAACTATCTTTTAACTTTTTAGACTGTTGTTAGACTCATTAAGTTATTATGTGATGTGATTTGGTGGTTGTTAATGCTATTGATTATGCCAAGTGACTTTACTGTTTGAGTCTTCGAGATTTAATGCTAAACATAGTATGTGAAAAGAGTCTGCTTTATGAGAAATGGTTCTTTTACCATTCAAAATCAGCTCTTTGAGGAACCGCTGCCACTGATTTAATGGACTAGTTAACCCGCTAAGCCTAGTATGTGAAAAGAGCCTGCTTTGGGTTTTATTTTATATATTTTTGGGCTTGACTATTTTCAAGGTCCCTGTTTATTATCCTGATTAGGTTGCAATCTAGTGGGGTTTTGCGAAGGTTATTTAGCGGTCCATGTTCGGAGGCAAAGGGCGTGGTGCTCTTAACTTGAATGCCTAGAGCAGGGAAATTTGGTGTACACTGATTTAAATATAGAAAAATAGTACAAAACGTAAAATCAAATGCTACAGAAAAAAAGTAGCTCTGGAGAATTTCACACTGGATTTAAAGGAGTAAAGAAACTGAACATATGTTAGCAATTGATAAATGGTATGCAACAATGAAGGTAGTCCTAAGTGGTTATTTCTATTCACTTTGGTGGTACAGGGCAGGATATATACAAGATATAGGTTGTTTAGATGGGGAGTTTCTATTGCAACTGTGTGCCTTCTATGTTTGGTAAGACGATAAAACTCTAGAGCACCTGTTTTCAAATGCCCATACTCAACTAATTTATGGGCAAAGCTGTTACACTGGATGAATATACACAGGGAGGCATAGGGATGGACACAAGAACTGGAATGGGCTATCAGTCATGCTAATGGGAAGATGGCCAGTGCCCGAGGTTACTGGTAGGGGATGTTTATTCTATCTGGCTAGAAAGGAATCAAAGAGTGTTTCAAAACAAGAGAATTGTTGAAGAAGTCTGCAGGATATTACTAGAGGTGCATTGTTGAGGCTGCTGCCAAAACAAAAGTTTCCTACTGCAACACGATGTTTACCCTTAAAAACAGTGCAGACTACAGAAATGATTTTTTCTCATGTGTCGTAGAACAGGAGGTACAGATAGAGAATAGGGGGGAAGGAGGTTTAGCTGAGATACTGATGGTTTGGTGTTGGTTGTATTTGATACATATCCCATACTTGTACATTTCTGTATTTTCCAAAAAAAAGATAAAATCTAGCTGGTTAGTTGTTCAGAAAATGGTAAATTGCTGGAAGAATGTTTATAAGGTCTTTGCTCATTCTTTTTGTGTCATCTAGTTTCCTTGTGGACTTGTTGGAAATAGCAAATTCATGTAAATAAGCAGAAATAGCCCAAAATAATTGCAAAATATGAAATTATTCTTGGATTTTGTTAGCTCTATAGCTTAGAAAGAGGCTACAAATCCTTTTTATGTGAGCTTAACTGATCTATCCTTGTAAAGTTTGCATCTTCTTGATGCCTTGAATTGAATCTACTTCATCAAAAAAAAAAAATATATGAAAACTTAAACTTGTAGAAGAAGTCATTAGTTGTTCTTAAAAGCATTTATGATTGTGAATTTGTTTGTCCACACTTGATATACTTCCGTTGCCTTGCATTCTCAATTAGATGTTTTCTTATTCCTGCACTTTGGATTTATGATTATATCAGAAATCTAATTTAACGATTAACATGCAGCATATAGGAGATCATCAGTTGCTTGCCCTTGGTTCTGATATGCAGTCAAACAGCAAAGATCTGCTTCACTTGGAGACTGAAGGCTTGTCCTTGGAATCAAAACTTCTCTTTTGCACTAGTGATGGCGGATCTCAATCTCTAAATTTGAAACCTGACGACCTTCCTGATAACAAGCCTAACAAGCCTGAAATCTCTTCTGTACCGAGAAGCCAAGTTCTAACAAAGGTCAAGGATTTTTTGGGAGTATTTTTGGAAAACAATAGAAAAGTGGAGCTTGAAGCAAAGAAGAATCCTGAGAAATATGATATCGAAGCTCTTACCGGTGAAGAATCTGAATACATAGAGATGGACTTAATGTTGGGTGTTGCTGAACTTCACACACAGGAGGCTGTATCAGCTGCTGAATCTGCAATAGCAAGTTACCAACCAGTAATCGATCTGGATACCAATGATACGACAGAATCTGAAGACACTAGCGATGAGGATGACATTGAGGATACCAACAAAAGTGATGATGATGATGATGATGATGATGATGGAGGTTCTTCTCTAGGAAAAGAATCTAAGCTTACAGAAAAGGATTCTCCTAAGAAAGCATTGAAGAGGAAGCGACAGCCTGTAAATCGAGCTAACATAGTTGAGCTCTCTTAGCGCTAAGGACATTAATTGTAGCTTATTTTTGGTGAGAAATTCAGAACATAGTTATAAGCGTGCTTCTCTTCCATGTTCCTATAAAACTTGTTTTAGTTCTACTCTTTATTAATCAAGTGTA</genome_strand>
        <mrna_strand>AATAACACTCATTTTTCAAATATCTTGCTGAGTCTTTACCGGGTGCCGCTCTGCCGCCGCCAGCTGCCGCTTGTTCATTATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATAGGAGATCATCAGTTGCTTGCCCTTGGTTCTGATATGCAGTCAAACAGCAAAGATCTGCTTCACTTGGAGACTGAAGGCTTGTCCTTGGAATCAAAACTTCTCTTTTGCACTAGTGATGGCGGATCTCAATCTCTAAATTTGAAACCTGACGACCTTCCTGATAACAAGCCTAACAAGCCTGAAATCTCTTCTGTACCGAGAAGCCAAGTTCTAACAAAGGTCAAGGATTTTTTGGGAGTATTTTTGGAAAACAATAGAAAAGTGGAGCTTGAAGCAAAGAAGAATCCTGAGAAATATGATATCGAAGCTCTTACCGGTGAAGAATCTGAATACATAGAGATGGACTTAATGTTGGGTGTTGCTGAACTTCACACACAGGAGGCTGTATCAGCTGCTGAATCTGCAATAGCAAGTTACCAACCAGTAATCGATCTGGATACCAATGATACGACAGAATCTGAAGACACTAGCGATGAGGATGACATTGAGGATACCAACAAAAGTGATGATGATGATGATGATGATGATGATGGAGGTTCTTCTCTAGGAAAAGAATCTAAGCTTACAGAAAAGGATTCTCCTAAGAAAGCATTGAAGAGGAAGCGACAGCCTGTAAATCGAGCTAACATAGTTGAGCTCTCTTAGCGCTAAGGACATTAATTGTAGCTTATTTTTGGTGAGAAATTCAGAACATAGTTATAAGCGTGCTTCTCTTCCATGTTCCTATAAAACTTGTTTTAGTTCTACTCTTTATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="66028" PGL_stop="68737"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66028" e_stop="66110"/>
            <exon e_start="67966" e_stop="68737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.940" e_score="0.976"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="66028" e_stop="66110" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.940">
            <gDNA_intron_boundary i_start="66111" i_stop="67965" i_length="1855"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="67966" e_stop="68737" e_length="772"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66028" stop="66110"/>
              <exon start="67966" stop="68737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAACACTCATTTTTCAAATATCTTGCTGAGTCTTTCCCGGCTGCCGCTCTGCCGCCGCCAGCTGCCGCTTGTTCATTATAG : CATATAGGAGATCATCAGTTGCTTGCCCTTGGTTCTGATATGCAGTCAAACAGCAAAGATCTGCTTCACTTGGAGACTGAAGGCTTGTCCTTGGAATCAAAACTTCTCTTTTGCACTAGTGATGGCGGATCTCAATCTCTAAATTTGAAACCTGACGACCTTCCTGATAACAAGCCTAACAAGCCTGAAATCTCTTCTGTACCGAGAAGCCAAGTTCTAACAAAGGTCAAGGATTTTTTGGGAGTATTTTTGGAAAACAATAGAAAAGTGGAGCTTGAAGCAAAGAAGAATCCTGAGAAATATGATATCGAAGCTCTTACCGGTGAAGAATCTGAATACATAGAGATGGACTTAATGTTGGGTGTTGCTGAACTTCACACACAGGAGGCTGTATCAGCTGCTGAATCTGCAATAGCAAGTTACCAACCAGTAATCGATCTGGATACCAATGATACGACAGAATCTGAAGACACTAGCGATGAGGATGACATTGAGGATACCAACAAAAGTGATGATGATGATGATGATGATGATGATGGAGGTTCTTCTCTAGGAAAAGAATCTAAGCTTACAGAAAAGGATTCTCCTAAGAAAGCATTGAAGAGGAAGCGACAGCCTGTAAATCGAGCTAACATAGTTGAGCTCTCTTAGCGCTAAGGACATTAATTGTAGCTTATTTTTGGTGAGAAATTCAGAACATAGTTATAAGCGTGCTTCTCTTCCATGTTCCTATAAAACTTGTTTTAGTTCTACTCTTTATTAATCAAGTGTA</gDNA_template>
            <first_frame> N  N  T  H  F  S  N  I  L  L  S  L  S  R  L  P  L  C  R  R  Q  L  P  L  V  H  Y  S :   I  *  E  I  I  S  C  L  P  L  V  L  I  C  S  Q  T  A  K  I  C  F  T  W  R  L  K  A  C  P  W  N  Q  N  F  S  F  A  L  V  M  A  D  L  N  L  *  I  *  N  L  T  T  F  L  I  T  S  L  T  S  L  K  S  L  L  Y  R  E  A  K  F  *  Q  R  S  R  I  F  W  E  Y  F  W  K  T  I  E  K  W  S  L  K  Q  R  R  I  L  R  N  M  I  S  K  L  L  P  V  K  N  L  N  T  *  R  W  T  *  C  W  V  L  L  N  F  T  H  R  R  L  Y  Q  L  L  N  L  Q  *  Q  V  T  N  Q  *  S  I  W  I  P  M  I  R  Q  N  L  K  T  L  A  M  R  M  T  L  R  I  P  T  K  V  M  M  M  M  M  M  M  M  M  E  V  L  L  *  E  K  N  L  S  L  Q  K  R  I  L  L  R  K  H  *  R  G  S  D  S  L  *  I  E  L  T  *  L  S  S  L  S  A  K  D  I  N  C  S  L  F  L  V  R  N  S  E  H  S  Y  K  R  A  S  L  P  C  S  Y  K  T  C  F  S  S  T  L  Y  *  S  S  V </first_frame>
            <second_frame>  I  T  L  I  F  Q  I  S  C  *  V  F  P  G  C  R  S  A  A  A  S  C  R  L  F  I  I   : A  Y  R  R  S  S  V  A  C  P  W  F  *  Y  A  V  K  Q  Q  R  S  A  S  L  G  D  *  R  L  V  L  G  I  K  T  S  L  L  H  *  *  W  R  I  S  I  S  K  F  E  T  *  R  P  S  *  *  Q  A  *  Q  A  *  N  L  F  C  T  E  K  P  S  S  N  K  G  Q  G  F  F  G  S  I  F  G  K  Q  *  K  S  G  A  *  S  K  E  E  S  *  E  I  *  Y  R  S  S  Y  R  *  R  I  *  I  H  R  D  G  L  N  V  G  C  C  *  T  S  H  T  G  G  C  I  S  C  *  I  C  N  S  K  L  P  T  S  N  R  S  G  Y  Q  *  Y  D  R  I  *  R  H  *  R  *  G  *  H  *  G  Y  Q  Q  K  *  *  *  *  *  *  *  *  *  W  R  F  F  S  R  K  R  I  *  A  Y  R  K  G  F  S  *  E  S  I  E  E  E  A  T  A  C  K  S  S  *  H  S  *  A  L  L  A  L  R  T  L  I  V  A  Y  F  W  *  E  I  Q  N  I  V  I  S  V  L  L  F  H  V  P  I  K  L  V  L  V  L  L  F  I  N  Q  V   </second_frame>
            <third_frame>   *  H  S  F  F  K  Y  L  A  E  S  F  P  A  A  A  L  P  P  P  A  A  A  C  S  L  *  :  H  I  G  D  H  Q  L  L  A  L  G  S  D  M  Q  S  N  S  K  D  L  L  H  L  E  T  E  G  L  S  L  E  S  K  L  L  F  C  T  S  D  G  G  S  Q  S  L  N  L  K  P  D  D  L  P  D  N  K  P  N  K  P  E  I  S  S  V  P  R  S  Q  V  L  T  K  V  K  D  F  L  G  V  F  L  E  N  N  R  K  V  E  L  E  A  K  K  N  P  E  K  Y  D  I  E  A  L  T  G  E  E  S  E  Y  I  E  M  D  L  M  L  G  V  A  E  L  H  T  Q  E  A  V  S  A  A  E  S  A  I  A  S  Y  Q  P  V  I  D  L  D  T  N  D  T  T  E  S  E  D  T  S  D  E  D  D  I  E  D  T  N  K  S  D  D  D  D  D  D  D  D  D  G  G  S  S  L  G  K  E  S  K  L  T  E  K  D  S  P  K  K  A  L  K  R  K  R  Q  P  V  N  R  A  N  I  V  E  L  S  *  R  *  G  H  *  L  *  L  I  F  G  E  K  F  R  T  *  L  *  A  C  F  S  S  M  F  L  *  N  L  F  *  F  Y  S  L  L  I  K  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0002G01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67966" stop="68616"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HIGDHQLLALGSDMQSNSKDLLHLETEGLSLESKLLFCTSDGGSQSLNLKPDDLPDNKPNKPEISSVPRSQVLTKVKDFLGVFLENNRKVELEAKKNPEKYDIEALTGEESEYIEMDLMLGVAELHTQEAVSAAESAIASYQPVIDLDTNDTTESEDTSDEDDIEDTNKSDDDDDDDDDGGSSLGKESKLTEKDSPKKALKRKRQPVNRANIVELS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 13 chains have been computed
$ 
$ memory statistics:
$ 2280 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 5560 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5560 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 14 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 15:30:30
-->
