<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 15:51:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316570" ref_strand="+" ref_description="SGN-U316570        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, gene model | chr3:5513331-5516942 FORWARD | Aliases: MYA6.8(evalue: 1e-127, score=453) genbank/nr: gi|9279710|dbj|BAB01267.1| gb|AAB63649.1~gene_id:MYA6.8~strong similarity to unknown protein [Arabidopsis thaliana](evalue: 1e-125, score=453)">
      <seq>gagaataataatataataataaaattgtggaggtcggttgggttgggtgaaaaaccctaaaagtagatttggagatcagatctgaaattgttgaatggattcaagcaggagggcggtagagtcgtattggaggtcacggatgatcgatggagcgacctctgatgaagataaagtgacgcctgtttacaaattggaggagatttgtgagttgcttagatcctcacattcctctattgttaaagaagtatctgaattcatcctcaaacgtctccaacacaaatccccaattgtcaagcaaaaggctctcagagtgatcaaatatgctgtcggaaaatcttgtccagaattcacaagggagatgcaaagaaattcagtcgctatacgccagttaattcactacaaaggtcaacccgaccctttgaaggctgatgcactcaataaagcagtccgtgaaacagcgcaggaagcattatctgctctattttcttcacaagacactaaacctcccacagaaaatctaaatcttggtggcagaatacaaggctttggtaataccagttatgaaattcatgatgataagaggtctttcctcagtgacgttgttggtgctacaattaaacaaggacttaatactcttacacaatctcctcctctcaaaaagaatgatactggaacttatacaagtccaaatcttcagagctcattgacaactcaacctgacacttctcacaatcatacttctcgcttttcaacaaatcctgcttctgcaacttggactcacactgaaacaacaaccaagccacattctgctgaaaagacccgagaagacaggttattagaaactattgcaacctccggtggagttcgtctgcagccaactcgggatgcacttcaggtcttccttctcgaggcttcaaaattagatgccttggctttgactcatgcccttgagtcaaagctgcaatcaccttcgtggcaggttcgtgtgaaagcaatctgtgtcctcgaggccatcttgaggaaaaaagatgatgctcactttggtactatggcatcttatttcactgaaaatagagatgttgtggtaaaatgctatgaatctccccaagcatcattaagagaaaaagcaaacaaagtcttaagtcttctgaatgatggacaaacagctgatgctgtggctcatgtagataggtcagcaaatgcttgtaaccctgttgtccagatgcctgacttgatagacacagacaattctgattatctgtttggaacagataatttaacaaatatgcagagtagtgaaggaataaagattgcatccacctctgccacccctctgatggatgatctatttggagacaaatcgggcagcagctttagttccagccaaaagaaaaatgatgatgacccctttgctgatgtttcttttcacatcagtaatgagaaagcgcctgaagctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="69624" stop="72825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69924" g_stop="70224" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70225" i_stop="70308" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70309" g_stop="70986" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="979" r_length="678" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70987" i_stop="71150" i_length="164">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71151" g_stop="71306" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="980" r_stop="1135" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71307" i_stop="72200" i_length="894">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72201" g_stop="72525" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1136" r_stop="1460" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-U316570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69924" e_stop="70224"/>
          <exon e_start="70309" e_stop="70986"/>
          <exon e_start="71151" e_stop="71306"/>
          <exon e_start="72201" e_stop="72525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATAATAATATAATAATAAAATTGTGGAGGTCGGTTGGGTTGGGTGAAAAACCCTAAAAGTAGATTTGGAGATCAGATCTGAAATTGTTGAATGGATTCAAGCAGGAGGGCGGTAGAGTCGTATTGGAGGTCACGGATGATCGATGGAGCGACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAGATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAATCCCCAATTGTCAAGCAAAAGGTAACACATATCTTCTATTCCCTCTTTATTTCTTTGTTACATACAACCTTGTTTATTTATTTATTTATTTATGTATGTATGCAGGCTCTCAGAGTGATCAAATATGCTGTCGGAAAATCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTACAAAGGTCAACCCGACCCTTTGAAGGCTGATGCACTCAATAAAGCAGTCCGTGAAACAGCGCAGGAAGCATTATCTGCTCTATTTTCTTCACAAGACACTAAACCTCCCACAGAAAATCTAAATCTTGGTGGCAGAATACAAGGCTTTGGTAATACCAGTTATGAAATTCATGATGATAAGAGGTCTTTCCTCAGTGACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATACAAGTCCAAATCTTCAGAGCTCATTGACAACTCAACCTGACACTTCTCACAATCATACTTCTCGCTTTTCAACAAATCCTGCTTCTGCAACTTGGACTCACACTGAAACAACAACCAAGCCACATTCTGCTGAAAAGACCCGAGAAGACAGGTTATTAGAAACTATTGCAACCTCCGGTGGAGTTCGTCTGCAGCCAACTCGGGATGCACTTCAGGTCTTCCTTCTCGAGGCTTCAAAATTAGATGCCTTGGCTTTGACTCATGCCCTTGAGTCAAAGCTGCAATCACCTTCGTGGCAGGTTTGTCTGTTGCTTAGAATTTCAAAAGTTGCTCAGATACTCACGCATTTATCTTCTTTATTTGACACTGCAAACTTTTTTTTTATTTGAACTGATAGACTCTGCTAATTAATGTTGATCTCAAACTAGTTCACATATTTTTACTTGGTCTTCTTTTATGCCAGGTTCGTGTGAAAGCAATCTGTGTCCTCGAGGCCATCTTGAGGAAAAAAGATGATGCTCACTTTGGTACTATGGCATCTTATTTCACTGAAAATAGAGATGTTGTGGTAAAATGCTATGAATCTCCCCAAGCATCATTAAGAGAAAAAGCAAACAAAGTAAGATTTCCAAGATGAACACTCTGCATTTATTTGCCGTCCTCTTATAGAAATGAAGAAACACATACACAAATATTAGTGCAAAGATTAATGTTTTTTTAAAGAGAAGACATGGAGAGAAAGACACCGAGGGAGAGAAAAAAAGAAACTCCAATTTGCATTTATCACATGGTGCTCTAATATTATGTTCACACTTATATTCTTCTAGGTTTTATAGGTCCCTGCTTCTATGCCTTCTAGTTTCATTTTCAAAATCTGCATGTATACTTGATAATTGTATATCTTTCACATAGTGGGTAACTATAAGTTTAAAGGTTGATTGCCATTGATCAGATTTGTAGCTTAGGTTATATATTATAAGGTGGGTATACACTCAAATCTCATCGTTCTGCTCAGAAAAAACTAGAGAAAATGGAGCTCGTCGCACCGGGCATGCCTAGTGCGGGTTACCTCTCCTATGTAGTTTGCGAGGTATTGCATAAGAGCGGGGTTTTACCTTGTGCACACCCAACGTGTAGCGGCTGCGGGTTTCCCTTGTCATAAAAAAAGTAGAGAAATGATACAGAAAACTGTTAATCCAGTGGAACAATTAAAGGTGATGATACCTAATTTATTTGACCAAAAAATATAAAATTCTAGGTAAAAGAGATGACTAGGAGAACAAATTATCTCATGATCCTCCATGTCATGCACCATTGTGATTCTGACATCAGATCCATAAAGGTGTGAATGGCGGGCATTTAAACAAGTCTCTTGCAGAGTTTGGGTTATACATCTCAGCTTCAGAAGGAAAAGGAAAAAAACATTTAATGTGCATATTTTGGCATCTTGCAACAAATGTATGATTGCATTATGTATCTTCCCTAGTTGAAGTCATGTGATGAATATGGGCAGGTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATC</genome_strand>
        <mrna_strand>GAGAATAATAATATAATAATAAAATTGTGGAGGTCGGTTGGGTTGGGTGAAAAACCCTAAAAGTAGATTTGGAGATCAGATCTGAAATTGTTGAATGGATTCAAGCAGGAGGGCGGTAGAGTCGTATTGGAGGTCACGGATGATCGATGGAGCGACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAGATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAATCCCCAATTGTCAAGCAAAAG....................................................................................GCTCTCAGAGTGATCAAATATGCTGTCGGAAAATCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTACAAAGGTCAACCCGACCCTTTGAAGGCTGATGCACTCAATAAAGCAGTCCGTGAAACAGCGCAGGAAGCATTATCTGCTCTATTTTCTTCACAAGACACTAAACCTCCCACAGAAAATCTAAATCTTGGTGGCAGAATACAAGGCTTTGGTAATACCAGTTATGAAATTCATGATGATAAGAGGTCTTTCCTCAGTGACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATACAAGTCCAAATCTTCAGAGCTCATTGACAACTCAACCTGACACTTCTCACAATCATACTTCTCGCTTTTCAACAAATCCTGCTTCTGCAACTTGGACTCACACTGAAACAACAACCAAGCCACATTCTGCTGAAAAGACCCGAGAAGACAGGTTATTAGAAACTATTGCAACCTCCGGTGGAGTTCGTCTGCAGCCAACTCGGGATGCACTTCAGGTCTTCCTTCTCGAGGCTTCAAAATTAGATGCCTTGGCTTTGACTCATGCCCTTGAGTCAAAGCTGCAATCACCTTCGTGGCAG....................................................................................................................................................................GTTCGTGTGAAAGCAATCTGTGTCCTCGAGGCCATCTTGAGGAAAAAAGATGATGCTCACTTTGGTACTATGGCATCTTATTTCACTGAAAATAGAGATGTTGTGGTAAAATGCTATGAATCTCCCCAAGCATCATTAAGAGAAAAAGCAAACAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316571" ref_strand="+" ref_description="SGN-U316571        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, gene model | chr3:5513331-5516942 FORWARD | Aliases: MYA6.8(evalue: 2e-58, score=223) genbank/nr: gi|18401075|ref|NP_566540.1| expressed protein [Arabidopsis thaliana] gi|13430666|gb|AAK25955.1| unknown protein [Arabidopsis thaliana] gi|14532838|gb|AAK64101.1| unknown protein [Arabidopsis thaliana](evalue: 1e-56, score=223)">
      <seq>tcccccgggctgagaattcgcacgaggatggntcttatttcactgaaaataagatgttgggtaaatgctatgaatctcccagctattaaagaaaaagcaaacaaagtcttaagtcttctgaatgatggacaaacagctgatgctgtggctcatgtagataggtcagcaaatgcttgtaaccctgttgtccagatgcctgacttgatagacacagacaattctgattatctgtttggaacagataatttaacaaatatgcagagtagtgaaggaataaagattgcatccacctctgccacccctctgatggatgatctatttggagacaaatcgggcagcagctttagttccagccaaaagaaaaatgatgatgacccctttgctgatgtttcttttcacatcagtaatgagaaagcgcctgaagctgatctcttttctggaatgacggttgacaaatcagatgctactgaaatccattcggtgaataatagaaatggacctgaactgtttgatatctttggttccagtgttgaagttcctcgggagcccaataattctagaaaggatgttcctgatttaatgaatagtctctctttgaatgggaatgagtcatccatggagcagaatggcagctcaggggcaaccccctatcagaatatatttcaagagcccactattgacccttgtcatcacgcttctaatgatgtcatgaatagcatactttcctcccaggctggtggagttaatgcaaatcccatgtttcctttgggttctatgcagtataacttgcctcctggcttcgtgttgaatccatcatttgctcctcaggctctaaactataatgctatgggaaacatttttgctcagcagcaactccttgcaacgctttccagttatcagcaattagggagcatgcactcatccactagtgctagtcatgctgctgattctgctgaagtttatggttcagctctccccgatatcttcaatgctagcatttctaagcaaactcctacttccttgatgaacacttcgaagaaagaagatacaaaggcattcgattttatctcggatcatttggctgcagctcgtgatccaaagagggtgatttgaatggtaatcattcaaagcaaataagaatacattgcttataatatgtagtagctatacacaatttgaagcacgaatttaatctgtaaagttcctttaagagcagtgctgtcagtgtgaaaagaccaactattttttttcttcttttctgcccaataatgagtattagctttacctgatgaacaaatgtttggatgtcattgccttcggaaatggagtgctgcaagggttttagaggtgttgtattctgatattacgataattattggatgacgttctttggtgtctctcatgttattcttttattcccatctctgttgtaaaactaaaactctataatatgagaaatatggcaaattatgacaagaaataaatgaaaggtaaattgtgatttattttttgaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="70920" stop="75139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71219" g_stop="71306" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="105" r_length="79" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71307" i_stop="72200" i_length="894">
            <donor d_prob="0.952" d_score="0.88"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72201" g_stop="73166" g_length="966"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="1071" r_length="966" r_score="0.999"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73167" i_stop="74396" i_length="1230">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74397" g_stop="74836" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1072" r_stop="1511" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1513" polyA_stop="1527"/>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-U316571" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1494</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71219" e_stop="71306"/>
          <exon e_start="72201" e_stop="73166"/>
          <exon e_start="74397" e_stop="74836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGCATCTTATTTCACTGAAAATAGAGATGTTGTGGTAAAATGCTATGAATCTCCCCAAGCATCATTAAGAGAAAAAGCAAACAAAGTAAGATTTCCAAGATGAACACTCTGCATTTATTTGCCGTCCTCTTATAGAAATGAAGAAACACATACACAAATATTAGTGCAAAGATTAATGTTTTTTTAAAGAGAAGACATGGAGAGAAAGACACCGAGGGAGAGAAAAAAAGAAACTCCAATTTGCATTTATCACATGGTGCTCTAATATTATGTTCACACTTATATTCTTCTAGGTTTTATAGGTCCCTGCTTCTATGCCTTCTAGTTTCATTTTCAAAATCTGCATGTATACTTGATAATTGTATATCTTTCACATAGTGGGTAACTATAAGTTTAAAGGTTGATTGCCATTGATCAGATTTGTAGCTTAGGTTATATATTATAAGGTGGGTATACACTCAAATCTCATCGTTCTGCTCAGAAAAAACTAGAGAAAATGGAGCTCGTCGCACCGGGCATGCCTAGTGCGGGTTACCTCTCCTATGTAGTTTGCGAGGTATTGCATAAGAGCGGGGTTTTACCTTGTGCACACCCAACGTGTAGCGGCTGCGGGTTTCCCTTGTCATAAAAAAAGTAGAGAAATGATACAGAAAACTGTTAATCCAGTGGAACAATTAAAGGTGATGATACCTAATTTATTTGACCAAAAAATATAAAATTCTAGGTAAAAGAGATGACTAGGAGAACAAATTATCTCATGATCCTCCATGTCATGCACCATTGTGATTCTGACATCAGATCCATAAAGGTGTGAATGGCGGGCATTTAAACAAGTCTCTTGCAGAGTTTGGGTTATACATCTCAGCTTCAGAAGGAAAAGGAAAAAAACATTTAATGTGCATATTTTGGCATCTTGCAACAAATGTATGATTGCATTATGTATCTTCCCTAGTTGAAGTCATGTGATGAATATGGGCAGGTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATCTCTTTTCTGGAATGACGGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCTTGTCATCACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCAAATCCCATGTTTCCTTTGGGTTCTATGCAGTATAACTTGCCTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGGTACAAAGGCATTCGATTTTATCTCGGTAAGTTTGGGTCTTGTGCACCTCCATTTTCTGTTATTGTTTTGAATCTGCATTAAATTGCGACTGCCTTTAGGTGCCCCTGACATTAAAGGTTGCCATTAACAATTCTTTATCTATGCTCTTCCAAACCTCCAAAAATAAAAAAAGAGGTGGTCCTACGCCTTTGTTCTTGTGGTGATATGGAAGTTGTCTGCATTTTATAATGGGGAAAGGGTCAGAAATGTCCATAAACTATGTGAAAGGAACAAAATTGTCCTTTATTTATAGTTTGGCTAAAAAATGGTCTTACCTTTAATACTTCTATTCAAATATGCCCTTGCAGTCCAGAAATGTCCCATAGTTACAAAATGGGTCAAAAATGCCCTTTTCCGAATAAATACATCATTTTTTTCTTTTTAAACATCTTCTTTCTAATTAAAATATTATTAATGAACACTATTCTTGTTTTCATTGATAAAAATGTAGGAGATATTATTTTTCTTTTTATTCTCATTTTGTCAATTAAAATAAAATAACTTTAGGTACCTTTGACAAATAATAATATGTGTCATATATAGAGCATCATATTATATCTCCATCATTCATTTATTTTTATATAACACTAAAAAATAATGATGATAAAATAAGAAACATTTTTATTTTTTTCTGAACTGAAGTAAGATAAAGAATTGCTAATTTTTTTTATAAAACATTATTAGAAAAAGATTATGTTAGAGAAAAGACAGAGAGCCAGTACTGGAGCTCTGCCGAATTTTTAAAAGGACACTTTAACTTTGTAACTGTCCTATTACCTCACTAAACAATTTTGAATAGATATAATCACATCATTTTTTTTGTCCATTTGACATAGAAAGTGGTGTGCTCATGAGCAGTCTAAAATAACTAATATAATTTTATTTTTACAAGTATTTTATTATAAAGTATATTTTCTTGTTCATTATAATCTTCATTCATTGAACAATAAGGACATTTTTGGACAAAATATTGACGGCATTAACATTTTTGGACCAAGGCATTTTTGAGCCTTTTCCCTTTTATAATCTGCTTATCCTTTTCTTTTAATATGTTATAGATGCATGCCTCATTCTAGAGCTTCTGTATTTCATTTATTTTTGTGTATGTTGTAAGTTTGTGAACGGCAGGGCACTTGAAAAGACTAGATGACTTCATTTTAGGACCTGTTTTGTGACTCTTGTATGTAACTTTGTTCCCATGGTGTTTTTTTTGCAGGATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTAGCTTTACCTGATGAACAAATGTTTGGATGTCATTGCCTTCGGAAATGGAGTGCTGCAAGGGTTTTAGAGGTGTTGTATTCTGATATTACGATAATTATTGGATGACGTTCTTTGGTGTCTCTCATGTTATTCTTTTATTCCCATCTCTGTTGTAAAACTAAAACTCTATAATATGAGAAATATGGCAAATTATGACAAGAAATAAATGAAAGGTAAATTGTGATTTATTTTTT</genome_strand>
        <mrna_strand>GATGG-NTCTTATTTCACTGAAAATA-AGATGTTG-GGTAAA-TGCTATGAATCT-CCC-AGC-T-ATTAA-AGAAAAAGCAAACAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATCTCTTTTCTGGAATGACGGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCTTGTCATCACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCAAATCCCATGTTTCCTTTGGGTTCTATGCAGTATAACTTGCCTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGATACAAAGGCATTCGATTTTATCTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTAGCTTTACCTGATGAACAAATGTTTGGATGTCATTGCCTTCGGAAATGGAGTGCTGCAAGGGTTTTAGAGGTGTTGTATTCTGATATTACGATAATTATTGGATGACGTTCTTTGGTGTCTCTCATGTTATTCTTTTATTCCCATCTCTGTTGTAAAACTAAAACTCTATAATATGAGAAATATGGCAAATTATGACAAGAAATAAATGAAAGGTAAATTGTGATTTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335736" ref_strand="+" ref_description="SGN-U335736        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>agcggctgcgggtttcccttgtcataaaaaaagtagagaaatgatacagagaactgttaatccagtggaacaattaaaggtgatgatacctaatttatttgaccaaaaaatataaaattctaggtaaaagagatgactaggagaacaaattatctcatgatcctccatgtcatgcaccattgtgattctgacatcagatccataaaggtgtgaatggcgggcatttaaacaagtctcttgcagagtttgggttatacatctcagcttcagaaggaaaaggaaaaaaacatttaatgtgcatattttggcatcttgcaacaaatgtatgattgcattatgtatcttccctagttgaagtcatgtgatgaatatgggcaggtcttaagtcttctgaatgatggacaaacagctgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="+" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="71523" stop="72538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71823" g_stop="72238" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="+" ref_id="SGN-U335736" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71823" e_stop="72238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGCTGCGGGTTTCCCTTGTCATAAAAAAAGTAGAGAAATGATACAGAAAACTGTTAATCCAGTGGAACAATTAAAGGTGATGATACCTAATTTATTTGACCAAAAAATATAAAATTCTAGGTAAAAGAGATGACTAGGAGAACAAATTATCTCATGATCCTCCATGTCATGCACCATTGTGATTCTGACATCAGATCCATAAAGGTGTGAATGGCGGGCATTTAAACAAGTCTCTTGCAGAGTTTGGGTTATACATCTCAGCTTCAGAAGGAAAAGGAAAAAAACATTTAATGTGCATATTTTGGCATCTTGCAACAAATGTATGATTGCATTATGTATCTTCCCTAGTTGAAGTCATGTGATGAATATGGGCAGGTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGC</genome_strand>
        <mrna_strand>AGCGGCTGCGGGTTTCCCTTGTCATAAAAAAAGTAGAGAAATGATACAGAGAACTGTTAATCCAGTGGAACAATTAAAGGTGATGATACCTAATTTATTTGACCAAAAAATATAAAATTCTAGGTAAAAGAGATGACTAGGAGAACAAATTATCTCATGATCCTCCATGTCATGCACCATTGTGATTCTGACATCAGATCCATAAAGGTGTGAATGGCGGGCATTTAAACAAGTCTCTTGCAGAGTTTGGGTTATACATCTCAGCTTCAGAAGGAAAAGGAAAAAAACATTTAATGTGCATATTTTGGCATCTTGCAACAAATGTATGATTGCATTATGTATCTTCCCTAGTTGAAGTCATGTGATGAATATGGGCAGGTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322023" ref_strand="+" ref_description="SGN-U322023        Tomato 200607 #1 [4 ESTs aligned] genbank/nr: gi|47900689|gb|AAT39288.1| putative transposase [Solanum demissum] (evalue: 6e-17, score=91.3)">
      <seq>tattatcctactatttcatccgtattaataaatatttgtgctctttcaattcaattttctaaatataaaaaaatagatcactttagagttgcaattgaaggtatgattgaaaaatttaaaaaatatttttttcctattcctcaagtttttttaacggctactttacttcatcctgcttataaattacaaggtgtgaaaggccttgtcgacactttttatgaaactttagaagttttaccggaagaaactccagattgtgaaacgtgtaagtatagcataaaaatagaagcaaaaattttgtatgaaaaatatagaactagtgaaaattttgaaggagaagttgctcaaacttctaatgttgagattgatttgtcagttccaatttcatgttatatgcgaggtattcttggtcttaattctactaaccgtgatgattttgaagaatatcttaatcaatctttagaaaacttggaaatcaaagatggcaatgaagatttattaggatggtggagtaggcgaaccgatgcatttccaactttgagcaaaatggttcgtgatgttctatctattcaagcttcatcagttgcatcagaggctgctctcagtgcggcaagatttcaaattagttatcatagacattcattggcggaagacagtttggaaacaacagttttatttagagactggtccaatgtcggaaggaggaataacaatttgccaaagttaagtaaaaaacaagcaagttggatcaaaacactaattgaatgcagtgattatgaattagagacacaagaatttctagcaagtttgctaacaccggaggatatcaccatcgatatgatgcgacaattagataaattttaaaggagaaaacaaatatttttagattacattcgagaactaattgaaacagaacccttctagaaggtggctgcgtannatttagtactcatctaatatctgtaacaatattagttttacgtataaaacttattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="-" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="78051" stop="76448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77751" g_stop="76748" g_length="1004"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="998" r_length="998" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="-" ref_id="SGN-U322023" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>1004</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77751" e_stop="76748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATACTACTATTTCATCCGTATTAATAAATATTTGTGCTCTTACAATTCAATTTTGTAAATATTAAAAAATAGATAAATTTAGAGTTGCAATTAAAGATATGATTGAAAATTTTAAAAAATATTTCTTTCCTATTCCTCAAGTTTTTTTTAACGGCTACTTTACTTCATCCTGCTTATATATTACAAGGTGTGCAAGGCCCTGTTGACACTTTTTATGAAATTTTAGAAATTTTATCGAAAGAAATTTCAAATTGTCAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAACTGTTGTATGAAAAATATAGAACTACGGAAAATTTTCAAGGAGAAGTTGGTCAAACTTCTAATGTTGAGATTAATTTTTCACTTCCAATTTCAACTTATATGTGAGGTATTCTTGGTCTTAATTTTATTAACCGTGATGATTTTGAAGAATATTTTAATCAATCTTTAGAAATATTGGAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGGTGAACCGATGCATTTCCAACTTTGATCTAAATGGTTCGTGATGTTCTAGCTATTCAAGCTTCATCAGTTGCATCGGTGGCTGCTTTCAGTGCGGCAAGGTTTCAAATTGGTTATCATAGACATTCATTGGCGGAAGACAGTTTTGAAACAACAATTTTATTTAGAGACTGATGCAATGCCGAAAGGAGGAATAACAATTTGCCAAAGTCAAGTAAAAAACAAGCAAGTTGGATCAAAACACAAACTGAATGCAGTGATGATGAATTAGAGGCACAAGTATTTCTAGCAAGTTTGCCAACACCGGAGGATATCACCATCGATATGATGTGACAATTAAAATTAAATTTTAAAGGAGAAAACAAATATTTTTAGATTATATTCGAGAACTAATTGAAAGAGAACTCTTCCTAGAAGGTGGCTATGTAATATTAGTTACTCATCTAATATATGTAACAAATATTATTATTACGTATGAGAACTTATTGAA</genome_strand>
        <mrna_strand>TATTATCCTACTATTTCATCCGTATTAATAAATATTTGTGCTCTTTCAATTCAATTTTCTAAATATAAAAAAATAGATCACTTTAGAGTTGCAATTGAAGGTATGATTGAAAAATTTAAAAAATATTTTTTTCCTATTCCTCAAG-TTTTTTTAACGGCTACTTTACTTCATCCTGCTTATAAATTACAAGGTGTGAAAGGCCTTGTCGACACTTTTTATGAAACTTTAGAAGTTTTACCGGAAGAAACTCCAGATTGTGAAACGTGTAAGTATAGCATAAAAATAGAAGCAAAAATTTTGTATGAAAAATATAGAACTAGTGAAAATTTTGAAGGAGAAGTTGCTCAAACTTCTAATGTTGAGATTGATTTGTCAGTTCCAATTTCATGTTATATGCGAGGTATTCTTGGTCTTAATTCTACTAACCGTGATGATTTTGAAGAATATCTTAATCAATCTTTAGAAAACTTGGAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGGCGAACCGATGCATTTCCAACTTTGAGCAAAATGGTTCGTGATGTTCTATCTATTCAAGCTTCATCAGTTGCATCAGAGGCTGCTCTCAGTGCGGCAAGATTTCAAATTAGTTATCATAGACATTCATTGGCGGAAGACAGTTTGGAAACAACAGTTTTATTTAGAGACTGGTCCAATGTCGGAAGGAGGAATAACAATTTGCCAAAGTTAAGTAAAAAACAAGCAAGTTGGATCAAAACACTAATTGAATGCAGTGATTATGAATTAGAGACACAAGAATTTCTAGCAAGTTTGCTAACACCGGAGGATATCACCATCGATATGATGCGACAATT-AGA-TAAATTTTAAAGGAGAAAACAAATATTTTTAGATTACATTCGAGAACTAATTGAAACAGAACCCTT-CTAGAAGGTGGCTGCGTANNATTTAGTACTCATCTAATATCTGTAAC-AATATTAGTTTTACGTAT-AAAACTTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337507" ref_strand="+" ref_description="SGN-U337507        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|18568261|gb|AAL75993.1| putative transposase [Zea mays](evalue: 1e-08, score=62.8)">
      <seq>tggaattctctttacgaaatgctttcggttgcttataaatatagaagacccatacaaatggtttttaatgccataatgctgacccattagatagaatttgtgatgaagattgggaagaaactaaagaacgattacaatttttaagacttttttatgatgctactaccatgttttcgggaatttattatcctactatttcatccgtattaataaatatttgtgctctttcaattcgattttgtaaatataaaaaaatagataaatttagagttgcaattgaaggtatgattgaaacattttaaaaatatttttttcctattcctcaagcttttttaacggctactttacttcatcctgcttataaattacaaggtgtgcaaggccttgttgacactttttataaaaagttagaaattttaccggaagaaattttaaattgtcaagcgtgtagtctagcataaaagtagaagcaaaagttttgtatgaaaaatatagaactattgaaaattttcaaggagaagttggtcaaacatctaatgttgagattgattcgtcacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="-" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="78234" stop="77071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77934" g_stop="77371" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="-" ref_id="SGN-U337507" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77934" e_stop="77371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCTCTTTATGAAATGATTCCGGTTGCTTACATATATAGAAGACCCATACAAATGGTTTTTAATGCTCATAATGCTGACCTATTAGATAGAATTTGTGATGAAGATTGGGAAGAAACTAATGAACTATTACAATTTTTAAGACTTTTTTATGATGCTACTACCATGTTTTCTGGAATTTATTATACTACTATTTCATCCGTATTAATAAATATTTGTGCTCTTACAATTCAATTTTGTAAATATTAAAAAATAGATAAATTTAGAGTTGCAATTAAAGATATGATTGAAAATTTTAAAAAATATTTCTTTCCTATTCCTCAAGTTTTTTTTAACGGCTACTTTACTTCATCCTGCTTATATATTACAAGGTGTGCAAGGCCCTGTTGACACTTTTTATGAAATTTTAGAAATTTTATCGAAAGAAATTTCAAATTGTCAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAACTGTTGTATGAAAAATATAGAACTACGGAAAATTTTCAAGGAGAAGTTGGTCAAACTTCTAATGTTGAGATTAATTTTTCACTTCC</genome_strand>
        <mrna_strand>TGGAATTCTCTTTACGAAATGCTTTCGGTTGCTTATAAATATAGAAGACCCATACAAATGGTTTTTAATGC-CATAATGCTGACCCATTAGATAGAATTTGTGATGAAGATTGGGAAGAAACTAAAGAACGATTACAATTTTTAAGACTTTTTTATGATGCTACTACCATGTTTTCGGGAATTTATTATCCTACTATTTCATCCGTATTAATAAATATTTGTGCTCTTTCAATTCGATTTTGTAAATATAAAAAAATAGATAAATTTAGAGTTGCAATTGAAGGTATGATTGAAACATTTTAAAAATATTTTTTTCCTATTCCTCAAG-CTTTTTTAACGGCTACTTTACTTCATCCTGCTTATAAATTACAAGGTGTGCAAGGCCTTGTTGACACTTTTTATAAAAAGTTAGAAATTTTACCGGAAGAAATTTTAAATTGTCAAGCGTGT-AGTCTAGCATAAAAGTAGAAGCAAAAGTTTTGTATGAAAAATATAGAACTATTGAAAATTTTCAAGGAGAAGTTGGTCAAACATCTAATGTTGAGATTGATTCGTCACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337508" ref_strand="+" ref_description="SGN-U337508        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|18568261|gb|AAL75993.1| putative transposase [Zea mays](evalue: 2e-07, score=60.1)">
      <seq>caaatgttttttaatgcttataatgctgaccagttagatagaatttgtgatgaagactgggaagaaactaaagaactattacagtttttaagacttttttatgatgctactaccatgttttctagaatttattatcctactatttcatccgtattaataaatatttgtgctcttacaattcaattttgtaaatataaaaaaatagataaatttagagttgcaattgaaggtatggttgaaaaattttaaaaatatttttttactattcgtcaagttttttttaccggctactttacttcatcccgcttataaattacaaggtttgcaagaccttgttgacacattttatgaaacttaagaaattttaccggaagaaatttcaaattgtcaaacgtgttgagtctagcataacagtagaagcaaagctgaaaaatataaaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0006E18-jodnU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0006E18.1" temp_strand="-" temp_description="C04HBa0006E18.1  CT990638.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0006E18 sequenced_by:sanger upload_account_name:uk">
        <position start="78180" stop="77184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77880" g_stop="77437" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0006E18.1" gen_strand="-" ref_id="SGN-U337508" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0006E18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77880" e_stop="77437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGGTTTTTAATGCTCATAATGCTGACCTATTAGATAGAATTTGTGATGAAGATTGGGAAGAAACTAATGAACTATTACAATTTTTAAGACTTTTTTATGATGCTACTACCATGTTTTCTGGAATTTATTATACTACTATTTCATCCGTATTAATAAATATTTGTGCTCTTACAATTCAATTTTGTAAATATTAAAAAATAGATAAATTTAGAGTTGCAATTAAAGATATGATTGAAAATTTTAAAAAATATTTCTTTCCTATTCCTCAAGTTTTTTTTAACGGCTACTTTACTTCATCCTGCTTATATATTACAAGGTGTGCAAGGCCCTGTTGACACTTTTTATGAAATTTTAGAAATTTTATCGAAAGAAATTTCAAATTGTCAAACGTG-TAAGTCTAGCATAAAAGTAGAAGCAAAACTGTTGTATGAAAAATATAG</genome_strand>
        <mrna_strand>CAAATGTTTTTTAATGCTTATAATGCTGACCAGTTAGATAGAATTTGTGATGAAGACTGGGAAGAAACTAAAGAACTATTACAGTTTTTAAGACTTTTTTATGATGCTACTACCATGTTTTCTAGAATTTATTATCCTACTATTTCATCCGTATTAATAAATATTTGTGCTCTTACAATTCAATTTTGTAAATATAAAAAAATAGATAAATTTAGAGTTGCAATTGAAGGTATGGTTGAAAAATTTTAAAAATATTTTTTTACTATTCGTCAAGTTTTTTTTACCGGCTACTTTACTTCATCCCGCTTATAAATTACAAGGTTTGCAAGACCTTGTTGACACATTTTATGAAACTTAAGAAATTTTACCGGAAGAAATTTCAAATTGTCAAACGTGTTGAGTCTAGCATAACAGTAGAAGCAAAGCTGAAAAAT-ATAAAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="69924" PGL_stop="74836"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69924" e_stop="70224"/>
            <exon e_start="70309" e_stop="70986"/>
            <exon e_start="71151" e_stop="71306"/>
            <exon e_start="72201" e_stop="73166"/>
            <exon e_start="74397" e_stop="74836"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="0.999"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69924" e_stop="70224" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70225" i_stop="70308" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70309" e_stop="70986" e_length="678"/>
          </exon>
          <intron i_serial="2" don_prob="0.917" acc_prob="0.995">
            <gDNA_intron_boundary i_start="70987" i_stop="71150" i_length="164"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71151" e_stop="71306" e_length="156"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.995">
            <gDNA_intron_boundary i_start="71307" i_stop="72200" i_length="894"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="72201" e_stop="73166" e_length="966"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73167" i_stop="74396" i_length="1230"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74397" e_stop="74836" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69924" stop="70224"/>
              <exon start="70309" stop="70986"/>
              <exon start="71151" stop="71306"/>
              <exon start="72201" stop="72525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71219" stop="71306"/>
              <exon start="72201" stop="73166"/>
              <exon start="74397" stop="74836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316571" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAATAATAATATAATAATAAAATTGTGGAGGTCGGTTGGGTTGGGTGAAAAACCCTAAAAGTAGATTTGGAGATCAGATCTGAAATTGTTGAATGGATTCAAGCAGGAGGGCGGTAGAGTCGTATTGGAGGTCACGGATGATCGATGGAGCGACCTCTGATGAAGATAAAGTGACGCCTGTTTACAAATTGGAGGAGATTTGTGAGTTGCTTAGATCCTCACATTCCTCTATTGTTAAAGAAGTATCTGAATTCATCCTCAAACGTCTCCAACACAAATCCCCAATTGTCAAGCAAAAG : GCTCTCAGAGTGATCAAATATGCTGTCGGAAAATCTTGTCCAGAATTCACAAGGGAGATGCAAAGAAATTCAGTCGCTATACGCCAGTTAATTCACTACAAAGGTCAACCCGACCCTTTGAAGGCTGATGCACTCAATAAAGCAGTCCGTGAAACAGCGCAGGAAGCATTATCTGCTCTATTTTCTTCACAAGACACTAAACCTCCCACAGAAAATCTAAATCTTGGTGGCAGAATACAAGGCTTTGGTAATACCAGTTATGAAATTCATGATGATAAGAGGTCTTTCCTCAGTGACGTTGTTGGTGCTACAATTAAACAAGGACTTAATACTCTTACACAATCTCCTCCTCTCAAAAAGAATGATACTGGAACTTATACAAGTCCAAATCTTCAGAGCTCATTGACAACTCAACCTGACACTTCTCACAATCATACTTCTCGCTTTTCAACAAATCCTGCTTCTGCAACTTGGACTCACACTGAAACAACAACCAAGCCACATTCTGCTGAAAAGACCCGAGAAGACAGGTTATTAGAAACTATTGCAACCTCCGGTGGAGTTCGTCTGCAGCCAACTCGGGATGCACTTCAGGTCTTCCTTCTCGAGGCTTCAAAATTAGATGCCTTGGCTTTGACTCATGCCCTTGAGTCAAAGCTGCAATCACCTTCGTGGCAG : GTTCGTGTGAAAGCAATCTGTGTCCTCGAGGCCATCTTGAGGAAAAAAGATGATGCTCACTTTGGTACTATGGCATCTTATTTCACTGAAAATAGAGATGTTGTGGTAAAATGCTATGAATCTCCCCAAGCATCATTAAGAGAAAAAGCAAACAAA : GTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGCTGTGGCTCATGTAGATAGGTCAGCAAATGCTTGTAACCCTGTTGTCCAGATGCCTGACTTGATAGACACAGACAATTCTGATTATCTGTTTGGAACAGATAATTTAACAAATATGCAGAGTAGTGAAGGAATAAAGATTGCATCCACCTCTGCCACCCCTCTGATGGATGATCTATTTGGAGACAAATCGGGCAGCAGCTTTAGTTCCAGCCAAAAGAAAAATGATGATGACCCCTTTGCTGATGTTTCTTTTCACATCAGTAATGAGAAAGCGCCTGAAGCTGATCTCTTTTCTGGAATGACGGTTGACAAATCAGATGCTACTGAAATCCATTCGGTGAATAATAGAAATGGACCTGAACTGTTTGATATCTTTGGTTCCAGTGTTGAAGTTCCTCGGGAGCCCAATAATTCTAGAAAGGATGTTCCTGATTTAATGAATAGTCTCTCTTTGAATGGGAATGAGTCATCCATGGAGCAGAATGGCAGCTCAGGGGCAACCCCCTATCAGAATATATTTCAAGAGCCCACTATTGACCCTTGTCATCACGCTTCTAATGATGTCATGAATAGCATACTTTCCTCCCAGGCTGGTGGAGTTAATGCAAATCCCATGTTTCCTTTGGGTTCTATGCAGTATAACTTGCCTCCTGGCTTCGTGTTGAATCCATCATTTGCTCCTCAGGCTCTAAACTATAATGCTATGGGAAACATTTTTGCTCAGCAGCAACTCCTTGCAACGCTTTCCAGTTATCAGCAATTAGGGAGCATGCACTCATCCACTAGTGCTAGTCATGCTGCTGATTCTGCTGAAGTTTATGGTTCAGCTCTCCCCGATATCTTCAATGCTAGCATTTCTAAGCAAACTCCTACTTCCTTGATGAACACTTCGAAGAAAGAAGGTACAAAGGCATTCGATTTTATCTCG : GATCATTTGGCTGCAGCTCGTGATCCAAAGAGGGTGATTTGAATGGTAATCATTCAAAGCAAATAAGAATACATTGCTTATAATATGTAGTAGCTATACACAATTTGAAGCACGAATTTAATCTGTAAAGTTCCTTTAAGAGCAGTGCTGTCAGTGTGAAAAGACCAACTATTTTTTTTCTTCTTTTCTGCCCAATAATGAGTATTAGCTTTACCTGATGAACAAATGTTTGGATGTCATTGCCTTCGGAAATGGAGTGCTGCAAGGGTTTTAGAGGTGTTGTATTCTGATATTACGATAATTATTGGATGACGTTCTTTGGTGTCTCTCATGTTATTCTTTTATTCCCATCTCTGTTGTAAAACTAAAACTCTATAATATGAGAAATATGGCAAATTATGACAAGAAATAAATGAAAGGTAAATTGTGATTTATTTTTT</gDNA_template>
            <first_frame> E  N  N  N  I  I  I  K  L  W  R  S  V  G  L  G  E  K  P  *  K  *  I  W  R  S  D  L  K  L  L  N  G  F  K  Q  E  G  G  R  V  V  L  E  V  T  D  D  R  W  S  D  L  *  *  R  *  S  D  A  C  L  Q  I  G  G  D  L  *  V  A  *  I  L  T  F  L  Y  C  *  R  S  I  *  I  H  P  Q  T  S  P  T  Q  I  P  N  C  Q  A  K   : G  S  Q  S  D  Q  I  C  C  R  K  I  L  S  R  I  H  K  G  D  A  K  K  F  S  R  Y  T  P  V  N  S  L  Q  R  S  T  R  P  F  E  G  *  C  T  Q  *  S  S  P  *  N  S  A  G  S  I  I  C  S  I  F  F  T  R  H  *  T  S  H  R  K  S  K  S  W  W  Q  N  T  R  L  W  *  Y  Q  L  *  N  S  *  *  *  E  V  F  P  Q  *  R  C  W  C  Y  N  *  T  R  T  *  Y  S  Y  T  I  S  S  S  Q  K  E  *  Y  W  N  L  Y  K  S  K  S  S  E  L  I  D  N  S  T  *  H  F  S  Q  S  Y  F  S  L  F  N  K  S  C  F  C  N  L  D  S  H  *  N  N  N  Q  A  T  F  C  *  K  D  P  R  R  Q  V  I  R  N  Y  C  N  L  R  W  S  S  S  A  A  N  S  G  C  T  S  G  L  P  S  R  G  F  K  I  R  C  L  G  F  D  S  C  P  *  V  K  A  A  I  T  F  V  A   : G  S  C  E  S  N  L  C  P  R  G  H  L  E  E  K  R  *  C  S  L  W  Y  Y  G  I  L  F  H  *  K  *  R  C  C  G  K  M  L  *  I  S  P  S  I  I  K  R  K  S  K  Q   : S  L  K  S  S  E  *  W  T  N  S  *  C  C  G  S  C  R  *  V  S  K  C  L  *  P  C  C  P  D  A  *  L  D  R  H  R  Q  F  *  L  S  V  W  N  R  *  F  N  K  Y  A  E  *  *  R  N  K  D  C  I  H  L  C  H  P  S  D  G  *  S  I  W  R  Q  I  G  Q  Q  L  *  F  Q  P  K  E  K  *  *  *  P  L  C  *  C  F  F  S  H  Q  *  *  E  S  A  *  S  *  S  L  F  W  N  D  G  *  Q  I  R  C  Y  *  N  P  F  G  E  *  *  K  W  T  *  T  V  *  Y  L  W  F  Q  C  *  S  S  S  G  A  Q  *  F  *  K  G  C  S  *  F  N  E  *  S  L  F  E  W  E  *  V  I  H  G  A  E  W  Q  L  R  G  N  P  L  S  E  Y  I  S  R  A  H  Y  *  P  L  S  S  R  F  *  *  C  H  E  *  H  T  F  L  P  G  W  W  S  *  C  K  S  H  V  S  F  G  F  Y  A  V  *  L  A  S  W  L  R  V  E  S  I  I  C  S  S  G  S  K  L  *  C  Y  G  K  H  F  C  S  A  A  T  P  C  N  A  F  Q  L  S  A  I  R  E  H  A  L  I  H  *  C  *  S  C  C  *  F  C  *  S  L  W  F  S  S  P  R  Y  L  Q  C  *  H  F  *  A  N  S  Y  F  L  D  E  H  F  E  E  R  R  Y  K  G  I  R  F  Y  L   : G  S  F  G  C  S  S  *  S  K  E  G  D  L  N  G  N  H  S  K  Q  I  R  I  H  C  L  *  Y  V  V  A  I  H  N  L  K  H  E  F  N  L  *  S  S  F  K  S  S  A  V  S  V  K  R  P  T  I  F  F  L  L  F  C  P  I  M  S  I  S  F  T  *  *  T  N  V  W  M  S  L  P  S  E  M  E  C  C  K  G  F  R  G  V  V  F  *  Y  Y  D  N  Y  W  M  T  F  F  G  V  S  H  V  I  L  L  F  P  S  L  L  *  N  *  N  S  I  I  *  E  I  W  Q  I  M  T  R  N  K  *  K  V  N  C  D  L  F  F </first_frame>
            <second_frame>  R  I  I  I  *  *  *  N  C  G  G  R  L  G  W  V  K  N  P  K  S  R  F  G  D  Q  I  *  N  C  *  M  D  S  S  R  R  A  V  E  S  Y  W  R  S  R  M  I  D  G  A  T  S  D  E  D  K  V  T  P  V  Y  K  L  E  E  I  C  E  L  L  R  S  S  H  S  S  I  V  K  E  V  S  E  F  I  L  K  R  L  Q  H  K  S  P  I  V  K  Q  K  :  A  L  R  V  I  K  Y  A  V  G  K  S  C  P  E  F  T  R  E  M  Q  R  N  S  V  A  I  R  Q  L  I  H  Y  K  G  Q  P  D  P  L  K  A  D  A  L  N  K  A  V  R  E  T  A  Q  E  A  L  S  A  L  F  S  S  Q  D  T  K  P  P  T  E  N  L  N  L  G  G  R  I  Q  G  F  G  N  T  S  Y  E  I  H  D  D  K  R  S  F  L  S  D  V  V  G  A  T  I  K  Q  G  L  N  T  L  T  Q  S  P  P  L  K  K  N  D  T  G  T  Y  T  S  P  N  L  Q  S  S  L  T  T  Q  P  D  T  S  H  N  H  T  S  R  F  S  T  N  P  A  S  A  T  W  T  H  T  E  T  T  T  K  P  H  S  A  E  K  T  R  E  D  R  L  L  E  T  I  A  T  S  G  G  V  R  L  Q  P  T  R  D  A  L  Q  V  F  L  L  E  A  S  K  L  D  A  L  A  L  T  H  A  L  E  S  K  L  Q  S  P  S  W  Q  :  V  R  V  K  A  I  C  V  L  E  A  I  L  R  K  K  D  D  A  H  F  G  T  M  A  S  Y  F  T  E  N  R  D  V  V  V  K  C  Y  E  S  P  Q  A  S  L  R  E  K  A  N  K  :  V  L  S  L  L  N  D  G  Q  T  A  D  A  V  A  H  V  D  R  S  A  N  A  C  N  P  V  V  Q  M  P  D  L  I  D  T  D  N  S  D  Y  L  F  G  T  D  N  L  T  N  M  Q  S  S  E  G  I  K  I  A  S  T  S  A  T  P  L  M  D  D  L  F  G  D  K  S  G  S  S  F  S  S  S  Q  K  K  N  D  D  D  P  F  A  D  V  S  F  H  I  S  N  E  K  A  P  E  A  D  L  F  S  G  M  T  V  D  K  S  D  A  T  E  I  H  S  V  N  N  R  N  G  P  E  L  F  D  I  F  G  S  S  V  E  V  P  R  E  P  N  N  S  R  K  D  V  P  D  L  M  N  S  L  S  L  N  G  N  E  S  S  M  E  Q  N  G  S  S  G  A  T  P  Y  Q  N  I  F  Q  E  P  T  I  D  P  C  H  H  A  S  N  D  V  M  N  S  I  L  S  S  Q  A  G  G  V  N  A  N  P  M  F  P  L  G  S  M  Q  Y  N  L  P  P  G  F  V  L  N  P  S  F  A  P  Q  A  L  N  Y  N  A  M  G  N  I  F  A  Q  Q  Q  L  L  A  T  L  S  S  Y  Q  Q  L  G  S  M  H  S  S  T  S  A  S  H  A  A  D  S  A  E  V  Y  G  S  A  L  P  D  I  F  N  A  S  I  S  K  Q  T  P  T  S  L  M  N  T  S  K  K  E  G  T  K  A  F  D  F  I  S  :  D  H  L  A  A  A  R  D  P  K  R  V  I  *  M  V  I  I  Q  S  K  *  E  Y  I  A  Y  N  M  *  *  L  Y  T  I  *  S  T  N  L  I  C  K  V  P  L  R  A  V  L  S  V  *  K  D  Q  L  F  F  F  F  F  S  A  Q  *  *  V  L  A  L  P  D  E  Q  M  F  G  C  H  C  L  R  K  W  S  A  A  R  V  L  E  V  L  Y  S  D  I  T  I  I  I  G  *  R  S  L  V  S  L  M  L  F  F  Y  S  H  L  C  C  K  T  K  T  L  *  Y  E  K  Y  G  K  L  *  Q  E  I  N  E  R  *  I  V  I  Y  F   </second_frame>
            <third_frame>   E  *  *  Y  N  N  K  I  V  E  V  G  W  V  G  *  K  T  L  K  V  D  L  E  I  R  S  E  I  V  E  W  I  Q  A  G  G  R  *  S  R  I  G  G  H  G  *  S  M  E  R  P  L  M  K  I  K  *  R  L  F  T  N  W  R  R  F  V  S  C  L  D  P  H  I  P  L  L  L  K  K  Y  L  N  S  S  S  N  V  S  N  T  N  P  Q  L  S  S  K  R :   L  S  E  *  S  N  M  L  S  E  N  L  V  Q  N  S  Q  G  R  C  K  E  I  Q  S  L  Y  A  S  *  F  T  T  K  V  N  P  T  L  *  R  L  M  H  S  I  K  Q  S  V  K  Q  R  R  K  H  Y  L  L  Y  F  L  H  K  T  L  N  L  P  Q  K  I  *  I  L  V  A  E  Y  K  A  L  V  I  P  V  M  K  F  M  M  I  R  G  L  S  S  V  T  L  L  V  L  Q  L  N  K  D  L  I  L  L  H  N  L  L  L  S  K  R  M  I  L  E  L  I  Q  V  Q  I  F  R  A  H  *  Q  L  N  L  T  L  L  T  I  I  L  L  A  F  Q  Q  I  L  L  L  Q  L  G  L  T  L  K  Q  Q  P  S  H  I  L  L  K  R  P  E  K  T  G  Y  *  K  L  L  Q  P  P  V  E  F  V  C  S  Q  L  G  M  H  F  R  S  S  F  S  R  L  Q  N  *  M  P  W  L  *  L  M  P  L  S  Q  S  C  N  H  L  R  G  R :   F  V  *  K  Q  S  V  S  S  R  P  S  *  G  K  K  M  M  L  T  L  V  L  W  H  L  I  S  L  K  I  E  M  L  W  *  N  A  M  N  L  P  K  H  H  *  E  K  K  Q  T  K :   S  *  V  F  *  M  M  D  K  Q  L  M  L  W  L  M  *  I  G  Q  Q  M  L  V  T  L  L  S  R  C  L  T  *  *  T  Q  T  I  L  I  I  C  L  E  Q  I  I  *  Q  I  C  R  V  V  K  E  *  R  L  H  P  P  L  P  P  L  *  W  M  I  Y  L  E  T  N  R  A  A  A  L  V  P  A  K  R  K  M  M  M  T  P  L  L  M  F  L  F  T  S  V  M  R  K  R  L  K  L  I  S  F  L  E  *  R  L  T  N  Q  M  L  L  K  S  I  R  *  I  I  E  M  D  L  N  C  L  I  S  L  V  P  V  L  K  F  L  G  S  P  I  I  L  E  R  M  F  L  I  *  *  I  V  S  L  *  M  G  M  S  H  P  W  S  R  M  A  A  Q  G  Q  P  P  I  R  I  Y  F  K  S  P  L  L  T  L  V  I  T  L  L  M  M  S  *  I  A  Y  F  P  P  R  L  V  E  L  M  Q  I  P  C  F  L  W  V  L  C  S  I  T  C  L  L  A  S  C  *  I  H  H  L  L  L  R  L  *  T  I  M  L  W  E  T  F  L  L  S  S  N  S  L  Q  R  F  P  V  I  S  N  *  G  A  C  T  H  P  L  V  L  V  M  L  L  I  L  L  K  F  M  V  Q  L  S  P  I  S  S  M  L  A  F  L  S  K  L  L  L  P  *  *  T  L  R  R  K  K  V  Q  R  H  S  I  L  S  R :   I  I  W  L  Q  L  V  I  Q  R  G  *  F  E  W  *  S  F  K  A  N  K  N  T  L  L  I  I  C  S  S  Y  T  Q  F  E  A  R  I  *  S  V  K  F  L  *  E  Q  C  C  Q  C  E  K  T  N  Y  F  F  S  S  F  L  P  N  N  E  Y  *  L  Y  L  M  N  K  C  L  D  V  I  A  F  G  N  G  V  L  Q  G  F  *  R  C  C  I  L  I  L  R  *  L  L  D  D  V  L  W  C  L  S  C  Y  S  F  I  P  I  S  V  V  K  L  K  L  Y  N  M  R  N  M  A  N  Y  D  K  K  *  M  K  G  K  L  *  F  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0006E18.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70018" stop="70224"/>
                    <exon start="70309" stop="70986"/>
                    <exon start="71151" stop="71306"/>
                    <exon start="72201" stop="73166"/>
                    <exon start="74397" stop="74438"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2046</number_coding_nucleotides>
                  <number_encoded_amino_acids>682</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHSSIVKEVSEFILKRLQHKSPIVKQKALRVIKYAVGKSCPEFTREMQRNSVAIRQLIHYKGQPDPLKADALNKAVRETAQEALSALFSSQDTKPPTENLNLGGRIQGFGNTSYEIHDDKRSFLSDVVGATIKQGLNTLTQSPPLKKNDTGTYTSPNLQSSLTTQPDTSHNHTSRFSTNPASATWTHTETTTKPHSAEKTREDRLLETIATSGGVRLQPTRDALQVFLLEASKLDALALTHALESKLQSPSWQVRVKAICVLEAILRKKDDAHFGTMASYFTENRDVVVKCYESPQASLREKANKVLSLLNDGQTADAVAHVDRSANACNPVVQMPDLIDTDNSDYLFGTDNLTNMQSSEGIKIASTSATPLMDDLFGDKSGSSFSSSQKKNDDDPFADVSFHISNEKAPEADLFSGMTVDKSDATEIHSVNNRNGPELFDIFGSSVEVPREPNNSRKDVPDLMNSLSLNGNESSMEQNGSSGATPYQNIFQEPTIDPCHHASNDVMNSILSSQAGGVNANPMFPLGSMQYNLPPGFVLNPSFAPQALNYNAMGNIFAQQQLLATLSSYQQLGSMHSSTSASHAADSAEVYGSALPDIFNASISKQTPTSLMNTSKKEGTKAFDFISDHLAAARDPKRVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71823" e_stop="72238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="71823" e_stop="72238" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71823" stop="72238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335736" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCGGCTGCGGGTTTCCCTTGTCATAAAAAAAGTAGAGAAATGATACAGAAAACTGTTAATCCAGTGGAACAATTAAAGGTGATGATACCTAATTTATTTGACCAAAAAATATAAAATTCTAGGTAAAAGAGATGACTAGGAGAACAAATTATCTCATGATCCTCCATGTCATGCACCATTGTGATTCTGACATCAGATCCATAAAGGTGTGAATGGCGGGCATTTAAACAAGTCTCTTGCAGAGTTTGGGTTATACATCTCAGCTTCAGAAGGAAAAGGAAAAAAACATTTAATGTGCATATTTTGGCATCTTGCAACAAATGTATGATTGCATTATGTATCTTCCCTAGTTGAAGTCATGTGATGAATATGGGCAGGTCTTAAGTCTTCTGAATGATGGACAAACAGCTGATGC</gDNA_template>
            <first_frame> S  G  C  G  F  P  L  S  *  K  K  *  R  N  D  T  E  N  C  *  S  S  G  T  I  K  G  D  D  T  *  F  I  *  P  K  N  I  K  F  *  V  K  E  M  T  R  R  T  N  Y  L  M  I  L  H  V  M  H  H  C  D  S  D  I  R  S  I  K  V  *  M  A  G  I  *  T  S  L  L  Q  S  L  G  Y  T  S  Q  L  Q  K  E  K  E  K  N  I  *  C  A  Y  F  G  I  L  Q  Q  M  Y  D  C  I  M  Y  L  P  *  L  K  S  C  D  E  Y  G  Q  V  L  S  L  L  N  D  G  Q  T  A  D   </first_frame>
            <second_frame>  A  A  A  G  F  P  C  H  K  K  S  R  E  M  I  Q  K  T  V  N  P  V  E  Q  L  K  V  M  I  P  N  L  F  D  Q  K  I  *  N  S  R  *  K  R  *  L  G  E  Q  I  I  S  *  S  S  M  S  C  T  I  V  I  L  T  S  D  P  *  R  C  E  W  R  A  F  K  Q  V  S  C  R  V  W  V  I  H  L  S  F  R  R  K  R  K  K  T  F  N  V  H  I  L  A  S  C  N  K  C  M  I  A  L  C  I  F  P  S  *  S  H  V  M  N  M  G  R  S  *  V  F  *  M  M  D  K  Q  L  M  </second_frame>
            <third_frame>   R  L  R  V  S  L  V  I  K  K  V  E  K  *  Y  R  K  L  L  I  Q  W  N  N  *  R  *  *  Y  L  I  Y  L  T  K  K  Y  K  I  L  G  K  R  D  D  *  E  N  K  L  S  H  D  P  P  C  H  A  P  L  *  F  *  H  Q  I  H  K  G  V  N  G  G  H  L  N  K  S  L  A  E  F  G  L  Y  I  S  A  S  E  G  K  G  K  K  H  L  M  C  I  F  W  H  L  A  T  N  V  *  L  H  Y  V  S  S  L  V  E  V  M  *  *  I  W  A  G  L  K  S  S  E  *  W  T  N  S  *  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0006E18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="77934" PGL_stop="76748"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77934" e_stop="76748"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="77934" e_stop="76748" e_length="1187"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77934" stop="77371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77880" stop="77437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77751" stop="76748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAATTCTCTTTATGAAATGATTCCGGTTGCTTACATATATAGAAGACCCATACAAATGGTTTTTAATGCTCATAATGCTGACCTATTAGATAGAATTTGTGATGAAGATTGGGAAGAAACTAATGAACTATTACAATTTTTAAGACTTTTTTATGATGCTACTACCATGTTTTCTGGAATTTATTATACTACTATTTCATCCGTATTAATAAATATTTGTGCTCTTACAATTCAATTTTGTAAATATTAAAAAATAGATAAATTTAGAGTTGCAATTAAAGATATGATTGAAAATTTTAAAAAATATTTCTTTCCTATTCCTCAAGTTTTTTTTAACGGCTACTTTACTTCATCCTGCTTATATATTACAAGGTGTGCAAGGCCCTGTTGACACTTTTTATGAAATTTTAGAAATTTTATCGAAAGAAATTTCAAATTGTCAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAACTGTTGTATGAAAAATATAGAACTACGGAAAATTTTCAAGGAGAAGTTGGTCAAACTTCTAATGTTGAGATTAATTTTTCACTTCCAATTTCAACTTATATGTGAGGTATTCTTGGTCTTAATTTTATTAACCGTGATGATTTTGAAGAATATTTTAATCAATCTTTAGAAATATTGGAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGGTGAACCGATGCATTTCCAACTTTGATCTAAATGGTTCGTGATGTTCTAGCTATTCAAGCTTCATCAGTTGCATCGGTGGCTGCTTTCAGTGCGGCAAGGTTTCAAATTGGTTATCATAGACATTCATTGGCGGAAGACAGTTTTGAAACAACAATTTTATTTAGAGACTGATGCAATGCCGAAAGGAGGAATAACAATTTGCCAAAGTCAAGTAAAAAACAAGCAAGTTGGATCAAAACACAAACTGAATGCAGTGATGATGAATTAGAGGCACAAGTATTTCTAGCAAGTTTGCCAACACCGGAGGATATCACCATCGATATGATGTGACAATTAAAATTAAATTTTAAAGGAGAAAACAAATATTTTTAGATTATATTCGAGAACTAATTGAAAGAGAACTCTTCCTAGAAGGTGGCTATGTAATATTAGTTACTCATCTAATATATGTAACAAATATTATTATTACGTATGAGAACTTATTGAA</gDNA_template>
            <first_frame> W  N  S  L  Y  E  M  I  P  V  A  Y  I  Y  R  R  P  I  Q  M  V  F  N  A  H  N  A  D  L  L  D  R  I  C  D  E  D  W  E  E  T  N  E  L  L  Q  F  L  R  L  F  Y  D  A  T  T  M  F  S  G  I  Y  Y  T  T  I  S  S  V  L  I  N  I  C  A  L  T  I  Q  F  C  K  Y  *  K  I  D  K  F  R  V  A  I  K  D  M  I  E  N  F  K  K  Y  F  F  P  I  P  Q  V  F  F  N  G  Y  F  T  S  S  C  L  Y  I  T  R  C  A  R  P  C  *  H  F  L  *  N  F  R  N  F  I  E  R  N  F  K  L  S  N  V  *  V  *  H  K  S  R  S  K  T  V  V  *  K  I  *  N  Y  G  K  F  S  R  R  S  W  S  N  F  *  C  *  D  *  F  F  T  S  N  F  N  L  Y  V  R  Y  S  W  S  *  F  Y  *  P  *  *  F  *  R  I  F  *  S  I  F  R  N  I  G  N  Q  R  W  Q  *  R  F  I  R  M  V  E  *  V  N  R  C  I  S  N  F  D  L  N  G  S  *  C  S  S  Y  S  S  F  I  S  C  I  G  G  C  F  Q  C  G  K  V  S  N  W  L  S  *  T  F  I  G  G  R  Q  F  *  N  N  N  F  I  *  R  L  M  Q  C  R  K  E  E  *  Q  F  A  K  V  K  *  K  T  S  K  L  D  Q  N  T  N  *  M  Q  *  *  *  I  R  G  T  S  I  S  S  K  F  A  N  T  G  G  Y  H  H  R  Y  D  V  T  I  K  I  K  F  *  R  R  K  Q  I  F  L  D  Y  I  R  E  L  I  E  R  E  L  F  L  E  G  G  Y  V  I  L  V  T  H  L  I  Y  V  T  N  I  I  I  T  Y  E  N  L  L   </first_frame>
            <second_frame>  G  I  L  F  M  K  *  F  R  L  L  T  Y  I  E  D  P  Y  K  W  F  L  M  L  I  M  L  T  Y  *  I  E  F  V  M  K  I  G  K  K  L  M  N  Y  Y  N  F  *  D  F  F  M  M  L  L  P  C  F  L  E  F  I  I  L  L  F  H  P  Y  *  *  I  F  V  L  L  Q  F  N  F  V  N  I  K  K  *  I  N  L  E  L  Q  L  K  I  *  L  K  I  L  K  N  I  S  F  L  F  L  K  F  F  L  T  A  T  L  L  H  P  A  Y  I  L  Q  G  V  Q  G  P  V  D  T  F  Y  E  I  L  E  I  L  S  K  E  I  S  N  C  Q  T  C  K  S  S  I  K  V  E  A  K  L  L  Y  E  K  Y  R  T  T  E  N  F  Q  G  E  V  G  Q  T  S  N  V  E  I  N  F  S  L  P  I  S  T  Y  M  *  G  I  L  G  L  N  F  I  N  R  D  D  F  E  E  Y  F  N  Q  S  L  E  I  L  E  I  K  D  G  N  E  D  L  L  G  W  W  S  R  *  T  D  A  F  P  T  L  I  *  M  V  R  D  V  L  A  I  Q  A  S  S  V  A  S  V  A  A  F  S  A  A  R  F  Q  I  G  Y  H  R  H  S  L  A  E  D  S  F  E  T  T  I  L  F  R  D  *  C  N  A  E  R  R  N  N  N  L  P  K  S  S  K  K  Q  A  S  W  I  K  T  Q  T  E  C  S  D  D  E  L  E  A  Q  V  F  L  A  S  L  P  T  P  E  D  I  T  I  D  M  M  *  Q  L  K  L  N  F  K  G  E  N  K  Y  F  *  I  I  F  E  N  *  L  K  E  N  S  S  *  K  V  A  M  *  Y  *  L  L  I  *  Y  M  *  Q  I  L  L  L  R  M  R  T  Y  *  </second_frame>
            <third_frame>   E  F  S  L  *  N  D  S  G  C  L  H  I  *  K  T  H  T  N  G  F  *  C  S  *  C  *  P  I  R  *  N  L  *  *  R  L  G  R  N  *  *  T  I  T  I  F  K  T  F  L  *  C  Y  Y  H  V  F  W  N  L  L  Y  Y  Y  F  I  R  I  N  K  Y  L  C  S  Y  N  S  I  L  *  I  L  K  N  R  *  I  *  S  C  N  *  R  Y  D  *  K  F  *  K  I  F  L  S  Y  S  S  S  F  F  *  R  L  L  Y  F  I  L  L  I  Y  Y  K  V  C  K  A  L  L  T  L  F  M  K  F  *  K  F  Y  R  K  K  F  Q  I  V  K  R  V  S  L  A  *  K  *  K  Q  N  C  C  M  K  N  I  E  L  R  K  I  F  K  E  K  L  V  K  L  L  M  L  R  L  I  F  H  F  Q  F  Q  L  I  C  E  V  F  L  V  L  I  L  L  T  V  M  I  L  K  N  I  L  I  N  L  *  K  Y  W  K  S  K  M  A  M  K  I  Y  *  D  G  G  V  G  E  P  M  H  F  Q  L  *  S  K  W  F  V  M  F  *  L  F  K  L  H  Q  L  H  R  W  L  L  S  V  R  Q  G  F  K  L  V  I  I  D  I  H  W  R  K  T  V  L  K  Q  Q  F  Y  L  E  T  D  A  M  P  K  G  G  I  T  I  C  Q  S  Q  V  K  N  K  Q  V  G  S  K  H  K  L  N  A  V  M  M  N  *  R  H  K  Y  F  *  Q  V  C  Q  H  R  R  I  S  P  S  I  *  C  D  N  *  N  *  I  L  K  E  K  T  N  I  F  R  L  Y  S  R  T  N  *  K  R  T  L  P  R  R  W  L  C  N  I  S  Y  S  S  N  I  C  N  K  Y  Y  Y  Y  V  *  E  L  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0006E18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77645" stop="77352"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKILKNISFLFLKFFLTATLLHPAYILQGVQGPVDTFYEILEILSKEISNCQTCKSSIKVEAKLLYEKYRTTENFQGEVGQTSNVEINFSLPISTYM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0006E18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77934" stop="77683"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WNSLYEMIPVAYIYRRPIQMVFNAHNADLLDRICDEDWEETNELLQFLRLFYDATTMFSGIYYTTISSVLINICALTIQFCKY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0006E18.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77185" stop="76967"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFKLHQLHRWLLSVRQGFKLVIIDIHWRKTVLKQQFYLETDAMPKGGITICQSQVKNKQVGSKHKLNAVMMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 35 chains have been computed
$ 
$ memory statistics:
$ 12208 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2034 bytes was the average size of a spliced alignment
$ 6920 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3460 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 43 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 15:52:39
-->
