<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 15:09:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6548" ref_strand="+" ref_description="SGN-M6548 C2_At1g08630 [cosii_markers]">
      <seq>cagctaattcataaaatttaagttgagtgaattgtctctctagcattgcttgaattgaagaatcagagaagagaagcttataaattcagtgaagatggtggtaagaactgtggatcttcgctcagacaccgtcactagaccaactgaagccatgcggaacgcaatggcgaatgctgaagtggatgatgatgtcttaggttatgatccaacagcccaacgccttgaagcagagatggcaaggataacgggcaaggaagcaggattatttgttccttctggcactatgggtaaccttatcagtgtgctgactcattgccaaatcaggggcagtgagattattctcggtgattattcccatatccatatttatgaaaatggaggcatttccacccttggaggtgttcatccaaggacagtgaagaacaatgaagatggtacgatggatcttgatctgattgaagctgcgattcgagatcctagctttgaaatatgttacccaaccactaggctgatctgcttggagaattcgcaagctcactcagggggcagatgcctttctgcggagtacacagacaaagttggagagctagcaaagaagtatggtctgaagctccacattgatggagctcgtatattcaatgcatcagttgcacttggagtgcctgttcataggcttgtacaggcagctgattcagtttcggtatgcttatcaaaaggtcttggtgctccagttggatctgtgattgttggttcgaagagcttcatttgcagggccaaaatcctgaggaagactctaggcggtggaatgaggcaaattggagtcctttgcgctgctgcttttaccgctttacaagagaatcttgttaagctggaaggagatcacagaaaggctaagattttggctgcggaacttaacaaaatcaaagggcttaaagttgatgttgccactgtagagaccaacattgtatattgcgacatactgaaggggtcaaggatcagtgaagcagagttggtcaagactttggaacaatatggtttacttatactaccagaaggcccactgagagtcagatttgttctacaccaccagatttcagaaagtgatgtacactatgcagtgtcttgcattcagcgagctttagcaggagtggctgaagaaaatggtgacaagtaaccggataaatcggtttcagacatgatctctttctgttagaaactgttccaaatgtttacatgggagagagaccagtttcattttcaaattttagtcaaatctttaaacttctcatttcatgtccttttaatgatcaaaagactttgtttgttcttcatatgtttgttgttggactagtttgtcctaatgatttagtaagaaatgaatgttggctcaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="28540" stop="22100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28240" g_stop="28219" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28218" i_stop="27615" i_length="604">
            <donor d_prob="0.892" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27614" g_stop="27553" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="84" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27552" i_stop="26367" i_length="1186">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26366" g_stop="25914" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="537" r_length="453" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25913" i_stop="25477" i_length="437">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25476" g_stop="25365" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="649" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25364" i_stop="24848" i_length="517">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24847" g_stop="24797" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="700" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24796" i_stop="24580" i_length="217">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.532" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24579" g_stop="24508" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="772" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="24507" i_stop="24436" i_length="72">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24435" g_stop="24303" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="905" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24302" i_stop="24228" i_length="75">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24227" g_stop="24169" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="906" r_stop="964" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="24168" i_stop="23520" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="23519" g_stop="23419" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="965" r_stop="1065" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="23418" i_stop="22813" i_length="606">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="22812" g_stop="22746" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1066" r_stop="1132" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="22745" i_stop="22660" i_length="86">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="22659" g_stop="22403" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1133" r_stop="1389" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1390" polyA_stop="1416"/>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-M6548" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1389</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28240" e_stop="28219"/>
          <exon e_start="27614" e_stop="27553"/>
          <exon e_start="26366" e_stop="25914"/>
          <exon e_start="25476" e_stop="25365"/>
          <exon e_start="24847" e_stop="24797"/>
          <exon e_start="24579" e_stop="24508"/>
          <exon e_start="24435" e_stop="24303"/>
          <exon e_start="24227" e_stop="24169"/>
          <exon e_start="23519" e_stop="23419"/>
          <exon e_start="22812" e_stop="22746"/>
          <exon e_start="22659" e_stop="22403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTAATTCATAAAATTTAAGGTAAATTAAAACTGAAAAAAGCTATAAACTTGCTATATTTCTTCAGTGACAAAATCTTGAAATTTTGTTCAGTAACAAAATCTTTGATAAAATCCAAAAAATTAAAATAAATTTGCATGCATGTAATTAAATGTGCTTATTTGCTGTCTCATACTCAGACCTAACAGGTGTTTTGATGATGTTTTTTGTTCATGTGATTGTGCTTGTGTTTCACTGTTTTTTTCCCTTTTTTTTGTTGTTTTGTATCACTGTAATCAGTCCAAAATTTGGTATCTTTAAAGTTTTCAGCTTTTTGTGATTGTTGGGGTTGTGGGGTTTGTTTTTTTAGGAAAAAGATTGAATTTTTATGCAAAATTCCAAATCTTGATTACTGAGCTTTGTTAGTAATTGTTTGTATGTATGTGTAGTAGTGCTATTTCTCTTTGATTCTTGAAATTTGTGGGTTAGAAGACAGACACCCATTGAGTTGGGAAGTGAAAAAAAATGTAGATTTTTTTTTTGTTGATTTTGGGTTTTTTATGCTTCTTTGTATGTGATTTTCTTGTTTGTTGAAAGGATTTGATGTTTTTGTTGTGAGGATTAACTTGTGGAATTTGGTTTGCAGTTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAAGTATGAACTTTTTTTCATATCTCTATTTACTTTTAGTATTTATGTTTGTGTTAGGCCTGTATAATGTTCTGAGTATCTGAAAGGGTTTTGAAATGTAATACTACCTCCATCTGTTCTCTTTTCGAGATTTAAACTATGTGAACATTGACCGACATTTTAAAATGTTCTTATTTTCGTTAGAATTGCAACTGATGATTGTTTTCATATAGTATCTGAATATCAAAATTTTAATTTTAAAAATATACACAATGTAATCCCGCAAGTGGAATGTGGGGAGGGTAGATAGAGTCCATAGAGACATTGTTTCTGATAGACCCTATATTGAGTTGATTTAATCTAATTTAGCTTCGAAGATTAGTCAATTTGACCCTCGAAAAGGGAAAATCGACACTTACTTTGCAATCGAGGGAGTACTAATATATAATGTCACATATTCTTGTAAGATTTTGGGCTCTCTATTCTTTAACTTAAGGATTTGAGTTAAATGCGCATATTGATGGTGTGACCTATCTGTATACATCATTTATCTTTCTTTTTTTTTTTTTTATGTAAAGAGAATGAAACTTAGTTTTATCTTGCTAATCTCAGAGAAGGTTACTCACACCAACATGGTTTATTTATTTAGTTACCAGAGAGACTTTTTTGTGTGTGGGAATTTAAAGAATATTAGGGGTGTGCTTCCACACTATTCAAGAAAGAATGAGCATTTCCAGTTTATCTAGTTTGTAGACGATTTTAGCCAACTCCAATTAGTTTGGGATTGAGGCTTAGTGAGTGACAGTTGGTTGTAGAATATTCTTTTTGGTGGCAAAGCCAGGATTTTCCAGCAAAGGGGTGTCTAGTGTCACTCCTCGAACGAGGGTGTCTCTGCTACTAATTCCTTTACCATTTGTAAACAAATTTCTTCTTGAGACAGGTTTACTTATTGCATAGTGAGTGATAAAACTCTCTTTTTGTTAATTGGTGACGTAGTTCATCCACCATATTGTTTGAGAGCCTATAGGTCTGTTTCCTGAAATTCCAGCTAATAGTCTTTTTTGTCGGGTGTCGATGTTTTGCTGCTGAAAAAGCTGTTTGCAATTTGTTTTATTTTTCTTACATGGGCATACTAAAAGCTAGACAGGTGGCCATTGAAGAATGAAATTATTAATTTATATGGGACATGTTGATTGTTTCTGTTTTCTAGTTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCAGTAAGAATATTCTCTCACTATTAACTCTTTTTACGGCAACCCTCATAATCATGCTTTATCTGGTAATGCTATTGGATTTGTGCTAGTTTTTGTTAGAGCTGTATATATTTAGTATATCGTCGACCATACAACAACAACTATGCTTCAGTTCCAAGCAAGTGGGGATCGGTAATATGAATCTTCACCGACCATGTCACTTTGTTTAAGCCCATATCAGTCCAATATTTATAAAATCATTAGTTCTTCTTGCATTAGAAGTTCTGTACATGTTAATTGGCATAAATCTCTAGCAAGTTTTAAAGACTCCTAGCAAACATTAGCTATAAACCATGTTTAAATTTTATATAGATCTTTTTCTTCACATTGCTTTAGTCAGTTTTGAGTATTGTCTCTCTTTATAATGCAAGTTCTTAACCAACAACACTCTATGAGTGCAGCTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTTGTGAGTACACAATTTTTTGACTTGTTAGGAAACAACCTGTTGTTTGGAGTCTGTCAATAATGCTACCTTGATTTGGATGGATTTTCAAATTAGAGTGATTTTCAGTAGTTTCTATAAAGTATATGCTTATAATGCTATATGAAACAAGTAGCACCTTTGTGAATTGAGATCTCATGGGACTTGAAAGATAAATAAAGAGCTAAATTTGATCTAGGATAGGTTAAAATGATAAATATTGGATTCAAATAAATGACGAATGTGCAACATAGCTAGGTGCACATTTTTATTCTAGACGCATATTTGTGCACAATAGCTTAAGTGTCTGCTTTGTCTTTTGACAGATTTAATAGTCATCGGTTCTTTTATATGGACATATGACTTGATGGAATTTTGAGTTTTATAGGAGTCTAAATGTAGAGTTCTCCATAATTACTTTTAAGGGCTTCTACTTTTGTCTTTCTGTATGCCTTCTTTATTTTATGTTCATTCTGATTAACTGGGTTAATCTGTCATTTAGGCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCGGTAAGTGATATTATCCCCAAAAATCTAGATTACCCTTTCTCTTTATTGTCTCTAGTTATTTCTGATCCACTTATTGAGTAACGAAACAAATACATTTTATTCATAACATGGTATATTAAAGGAGAAACAAAGAGATGTTTTATGTTTAGCTTGTAATGTATGACAAGGTTTTTAGTGTATTTTTCCCGAATTTCTGCTCATTTAAGAGTCTGTGCAGGTATGCTTATCAAAAGGTCTTGGTGCTCCAGTTGGATCTGTGATTGTTGGTTCGAAGAGCTTCATTGCCAGGGTATGTATGCTTTTGCATAAAAAAAATTATTTGTTCCTTGCCAAATAGCTCATTGTTTCCTTCGTTTTTTAGGCCAAAATCCTGAGGAAGACTCTAGGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTACCGCTTTACAAGAGAATCTTGTTAAGCTGGAAGGAGATCACAGAAAGGCTAAGATTTTGGCTGGTAATATTTTCTCCATTTGATAAGTTTATTAACTAACTCTTTTCATTTGCCTAATGATTACCATTTACTTCTCAGCGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATTGTAAGTTGACTCATCAGAAATGATGCTTAATTTTCTTTTAATTTAAAAGATGATGCTTACTTTTGAGTTTCTTAACAGCTGATACGTGTTTCCGGAAATATGTGCAATTCAGTTAGATGAACCATTACCAAGATTCTGACTGAACCGGCATTTCTGCAAGAGGCTGATTCAAGCCATGGAAACAGCCTCTTGTAGAAAGCGGGGTAAGGCTGCGTATGATGTACCTTTGTCGTCCTCCCCTTCCCGAACCCCATGCATAGTGGAAGCTTTAGTGCACTGGGCTGCCCTTGATACATTACTGCTCTGACATCGATTAAAAAGCCAGCCCATCTAACCCCCTCTCCTCATAGACAACTACCTCACCTTGCTCGTAGCCCATCGGAGTTCAGACTTAATCCCCTAAAGAATAGATCAATCCAGCGATACAGAACTTCTCATGAGCCAGTTATCATGTTTCATTAACTCTTTTACATTCGGAAAACAACCTCCATAAAGCTGAGATCGAATTGCAAGAAGGAAATTTGGCTTCTGGATAGGGATGTCTTTCCTCTGGAAGGAATCTCTCCTCTCTAGTAGTCCACAGAGGGAAACCCCCATACCAATGTAAAATTTTCTTTCAGTTCCTTACGATTCCTTTTGTTATCATCAGGTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTACCAGAAGGCCCACTGAGGTACGCTTGCCTTTTTGTTCTTCAAATCTCCATCTAAGCACAGTTACACGTTTCCCTTGAGCGTTTATGCAGCTAAGCTCGTTTAGAGTTCAAGTAGTGAGAAATTACATAACATGCGTGTTCAAGAGGTACAAACACTTGAACTATCACATCCATAGTTGCACGAGATGTTGATGCATGTAAATATCTTTTCCTTTCTTGATGACAATGTTTAGTATAGTTGATGTTTCAAAAATGATGTTGAAGCAAACACTACTTTTGGAGGATTTGACATGCATCCACTGACTGACTTTTTTGAAGAATCCGTGCAATATAGTGTATAATTGAGATTGTTAGCATTTAATGATAGGCTCTTGTAGCGCCTTAACTGGTTTTTCAACTCAAAATCTGCTAGTAGTGCTCAAACTTGCATTTGTTGGTAAGATAGAAGATCGACAACGCTACAATATTTTTTGCCCCTAGTTTTGATATGTTTCAGAAGATTTGGCTGTCCATTCTCCTTTAATCGACTTATTTATGGAAAAATGCAAGAACTCCAAATATTGGTATCCTACAGCTCGTAAGAAACCTTCTGAGACTTAGAAATGTATGCCAATTCCACTGCAGAGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAGGTAAGAAGTTAAATAAGTCGAAGCATCTACGTTCACAAATGATCACCCACTCTTCGCTTACATTTTCTCTCGTTAAATATCTGCAGCGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGTTGTTGGACTAGTTTGTCCTAATGATTTAGTAAGAAATGAATGTTGGCTC</genome_strand>
        <mrna_strand>CAGCTAATTCATAAAATTTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCG.........................................................................................................................................................................................................................GTATGCTTATCAAAAGGTCTTGGTGCTCCAGTTGGATCTGTGATTGTTGGTTCGAAGAGCTTCATTTGCAGG........................................................................GCCAAAATCCTGAGGAAGACTCTAGGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTACCGCTTTACAAGAGAATCTTGTTAAGCTGGAAGGAGATCACAGAAAGGCTAAGATTTTGGCTG...........................................................................CGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTACCAGAAGGCCCACTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAG......................................................................................CGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGTTGTTGGACTAGTTTGTCCTAATGATTTAGTAAGAAATGAATGTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2276" ref_strand="+" ref_description="SGN-M2276 T1792 [cos_markers]">
      <seq>agatgtccgtcaaaggaatataaaaaggacaggtattgattacaatgctgaaattccctttgaaaagaagcctcctccaagtttctatgatgtcactgaggaagaccgtccagttgatcaacctaagtttccaactaccattgaggaactagaaggtgaaaggagagtcgataaggaagctcgcctaaggaagcacgatattgcgaggaacaaaattgcagagagacaggatgcccctacatccatattgcatgcgaacaaacttaatgatccagaagcagtgaggaagaggtcgaaactgaatcttccagcaccacagattccagatcatgaattggaggccatagcaaagataggtattgccagtgatctaattgggggagatgaactgtccgaagggaatgctgcaacgcgtgctcttcttgcaaattatgcccagacaccacaacatgctatgactcctatgcgaacacctcaaagaaccccttcaactaagcaagacgccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="43714" stop="42608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43414" g_stop="42908" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-M2276" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M2276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43414" e_stop="42908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGTCCGTCAAAGGAAGAGAAAAAGGAGAGGTATTGATTACAATGCTGAAATTCCCTTTGAAAAGAAGCCTCCTCCAGGTTTCTATGATGTCACTGAGGAAGACCGTCCAGTTGATCAACCTAAGTTTCCAACTACCATTGAGGAACTAGAAGGTGAAAGGAGAGTCGATAAGGAAGCTCGCCTAAGGAAGCAGGATATTGCGAGGAACAAAATTGCAGAGAGACAGGATGCCCCTACATCCATATTGCATGCGAACAAACTTAATGATCCAGAAGCAGTGAGGAAGAGGTCGAAACTGAATCTTCCAGCACCACAGATTCCAGATCATGAATTGGAGGCCATAGCAAAGATAGGTATTGCCAGTGATCTAATTGGGGGAGATGAACTGTCCGAAGGGAATGCTGCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAACATGCTATGACTCCTATGCGAACACCTCAAAGAACCCCTTCAACTAAGCAAGACGCCAT</genome_strand>
        <mrna_strand>AGATGTCCGTCAAAGGAATATAAAAAGGACAGGTATTGATTACAATGCTGAAATTCCCTTTGAAAAGAAGCCTCCTCCAAGTTTCTATGATGTCACTGAGGAAGACCGTCCAGTTGATCAACCTAAGTTTCCAACTACCATTGAGGAACTAGAAGGTGAAAGGAGAGTCGATAAGGAAGCTCGCCTAAGGAAGCACGATATTGCGAGGAACAAAATTGCAGAGAGACAGGATGCCCCTACATCCATATTGCATGCGAACAAACTTAATGATCCAGAAGCAGTGAGGAAGAGGTCGAAACTGAATCTTCCAGCACCACAGATTCCAGATCATGAATTGGAGGCCATAGCAAAGATAGGTATTGCCAGTGATCTAATTGGGGGAGATGAACTGTCCGAAGGGAATGCTGCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAACATGCTATGACTCCTATGCGAACACCTCAAAGAACCCCTTCAACTAAGCAAGACGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6549" ref_strand="+" ref_description="SGN-M6549 C2_At1g08640 [cosii_markers]">
      <seq>gaaaaccctaatccctttagcagagaagaaagaaggagtagctcaaaaatggtgtttacaatatcatcaaaccctgttcagtttacacatactacttctttaaatgctcgacccaattgttatctcaaagcttctgttccagtttcaaatttatcgttttctttcttcagacatgaatacatcaggttttctgtaaaatctcgcctgaataaaaggatggtctgtgctgctgcttcagctgctggaagttctagttctagcgatgactcaaatccttatgaggttctgggtgtaaaccctattgagggatttgacatggttaaggcagcatatgcaaggagaaggaaagatgctgagcggaggggtgatgaagcaacgcttgctcagttggagaaggcttatgacaaaatcatgatgtcacagttaacaaaaaggaagcagggtgtcacttttggctcgtttaaggtatctaaagaggtacgatatgctgataagcagcctattttgccatggggtccacggttcaccaaatctgatgacaaagatatcaaaatcaacttggcaatttcagctgtatttatagcttgggtttttataaatcgtaatgctgagtggaagcctttacagtttttggccttcgcctttgtatataggatatttgagaaattaaaagcatttgagcctccaactcccacgtttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="51336" stop="47410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51036" g_stop="50867" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586">
            <donor d_prob="0.737" d_score="1.00"/>
            <acceptor a_prob="0.601" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="282" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50062" g_stop="49958" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="387" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49846" g_stop="49769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="465" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49406" g_stop="49351" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="521" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49350" i_stop="48971" i_length="380">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48970" g_stop="48913" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="579" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48912" i_stop="47832" i_length="1081">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47831" g_stop="47710" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="701" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-M6549" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51036" e_stop="50867"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="50062" e_stop="49958"/>
          <exon e_start="49846" e_stop="49769"/>
          <exon e_start="49406" e_stop="49351"/>
          <exon e_start="48970" e_stop="48913"/>
          <exon e_start="47831" e_stop="47710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAGGTAATTTTCTGTTGTTGTTTTGTTATGTATGGATTAGTTACATACTGTACATTGCAATATGAATACTACCCATAATGCCTAATTCATGTTTTATGATTTGTTTTTGTGGTTTTGGGTTGGAATTGCTGAAATTTGAATTGGGTTTTTTGTAAAAAGTTGGGTAGGATATGGAAGTGAGGTTTAACTGAAAAGGGTTCTTCATAGAAACTTTTTAATTGAGCTAACGGAAGTGGGATTTTCATGTTGTTGAAATTGGGGAATGTATGGATATGGACGATTAATATAAATGACCCTGCAGCTAATTAGAGATTGATGGGTAGTTGATTGGTTGATATATTGATTATACGTAACTGTAAAATGACAATGGGGAGTCTTTTGGAGGTTAAAGTTGGGGTCTTTTTTACTACTCTATTATGATTGCATTTCCTACTTAAAAAGATTGAGGTGTAGTGTAGTTGGTTGAGTATTGATTGATCATAACTGTAAAATGGCAACGGGGGGAGTGGTGGAGATTAGAGTTGTAGTATTTTTACTCCTTGATTATGATTGCATTTCCTCCTTCTAGCAATTGACTGTGTGTGATCAGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTAATTTAGAGTTATCTCATTTGGACAAGAGAAATGTTTATAAAGTTCAGCTCCTCTAGTGAGGGGTGTGCATCTCTGGTCCTTTGTGCTAAACTGTTTTGTACAGGTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGGTAGTTAGTGCTTAGCAATCTATCTATCTCTAACTCGCTTTCGTTCTTCATATATTTGATTGTTGTTAGGAGTAAGCACTCAATGCAAGCCTTTTAAACTTTTTGTTTCAGTTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAGGTATTATTTTTTGGTTTCAAAGCTAGCTAAAATCTTAGTAGCATGCAGTTTTAGGCAATGTTTGTTCACTCTTGGGGTTTTGTAAATATTTTGTATTTTCTGTTCATATAATGTAATTGAGGTGGGGGTGGATTTTGATTAGGATACTTATAGTCATTTTATTCTTTTTTCTTTACTATTCGCACAAATTTTCCCCATCTTTTACTATATGAAAATAGAATTGCTCTTCTATCCCTGGATTAATTGCAAGAATTTTCTTAGTAATTTTATTTATGATATTCTATATGTATAAGATTTGGCTGTTTAGCTTTGTTTAGGCGCAGATACTGATTTCTCTTATAAGTTTGTTATTTTTAATTTAGGTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACGGTACGTATTCTGCCAATAATGCTTTCATGACAATAGCTCTCTGAAATTAGATAGTTCTCTTGCTTGCAACTATGCGTAATTGACAATTATTTTTCAATGATTCAAAAATTAGTATAAATTACATTTGCTGAATTTAGTTGGCTGTTGTGTAATTAACACATACATGCATTAACATCTTTACCACACATATAGGTAAATGCCTTACTGACTCAACCAAAGCTATTTGTATGCAAATATTTCAGTATGCTATTAGTTTCTCTTCCCCTTCCGGTCCTTGTCCCTCGAAACATCTTTGCTTTACATTTACTGGTAGGAAATTCATGCAGCAGATTATGTAATTTTTACCCTTTTCAGTTATTAATTTTAATGCATGCTTTCAGGTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTTGTAAGTAGTAAAATATTCATCCTTCCATTCCAATCTGGTTTTCTTGTTTGCCTTTTAGGATGCTAGTTTACAAATTGTTGTAGTAAAATCATGGATAAATTCGTATTTAAGTATGATTTAGAAAATTCAGAAATTATATGAAAAATTCTGACATTGGAAGTATTTTCATCTCAAAATACAAAAATAGATATGGTTGACTTGAAAAGTCACAATCTTTTGAAACAGAGAGTAGTTATTCCGTCTTCTACAAGGGCCTCCTTTTGATTTTTTTTCTACGTTAATGTATCTATTTCTTTCTCTAGGTGATCTGCCTACCCTCTTACAATTTAAGTGTTACTTTTTATAATTGAATAGTTTATATGTGCTTATTTGAATCATTATGGATCCTTGGATGTTTCATAATAGTCATGTATGGAAAGTACAGCCGCGGCTACTCAAAATATTGGTTTCCATTCAAGCATGGCTTGAACCCAACATAAAGTGCATGAAAGCTTACTGATGCTTCAACCCATATCTACCTCTGTCCACTTCTATGAGTTCTTTTTCAAGTTCTGCACTTTTATTCTTTTGGTAATGAATGAGTTCTATGGTCAACCTTGGGGGTCTTTCAAGGGTTACTGGAACTAATATATAATGTAACCAATCATCGGAAATTTGTGCCTGAAGAAGTTTTTAGCGCCTAAGAATTTGTGCTTGAAGGTTTTCCTTTAGCTGAACCTCCTTTGTTTAAGACTTCAATCTCTTTGGTGATATGCTCTGTTTCTAAGTACTTGATACCAAAAGAAGAGACTCTGTATTGCAACGAGTAATGCTTCATAAGTGCAAGATAAGTAGATAGCAGCAGTAATTCACCGGATCTTCCGTCTACAAAAATAGAAGAGGTGTATGTTAAGGTTCGCTTCATGAAAGCAAGAAAGGAAGCAAGTTCGACCTTGCCAGAAAAAAAGAAAGATAACAGAAATAATTTTGTTAATCATTGTCATCGCTCTCTGTTAAATGCAGTTCTCACTCTCGATTTAATGAAATATTAATCTCGATTCTCCTAATGGTACTCTGTTGTTTTATGTATTATCTTTTGCAGATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTGAGCCTCCAACTCCCACGTTTAC</genome_strand>
        <mrna_strand>GAAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAG..........................................................................................................GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAG...............................................................................................................TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACG............................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTGAGCCTCCAACTCCCACGTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6549-2" ref_strand="+" ref_description="SGN-M6549-2 C2_At1g08640-2 [cosii_markers]">
      <seq>gaaaaaccctaatccctttagcagagaagagagtgttggaagctcaaaaatggtgtttacaatatcatcaaacccagttcagtttacacatagtacttctttaatttctcgacccaatcgttatctgaaaagttctgttccagtttcaaatttatcattttcttgcttcagacatgagtacatcaggttttccgtaaaatctcaactgaataaaaggatggtctgtgctgctgcttcagctgctggaagttctagttcgagtgatgactcaaatccttatgaggttctgggtgtaaaccctattgagggatttgacatggttaaggcagcatatgcaagaagaaggaaagatgctgagcggaggggtgatgaagcaactcttgctcagttggagaaggcttatgacaaaatcatgatgtcacagttaacgaaaaggaagcagggtgtcacctttggctcttttaaggtatctaaagaggtacgatatgctgataagcagcctattgtgccatggggtccacggttcaccaaatctgatgacaaagatatcaagatcaacttggcaatttcagctgtatttatagcttgggtttttataaatcgtaatgctgagtggaagcctttacagtttttggccttcgcctttgtatataggatatttgagaaattaaaagcatttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0008H22-IXPQj/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0008H22.1" temp_strand="-" temp_description="C04HBa0008H22.1  CU104691.12 htgs_phase:3 submitted_to_sgn_as:C04HBa0008H22 sequenced_by:sanger upload_account_name:uk">
        <position start="51337" stop="47430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51037" g_stop="50867" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586">
            <donor d_prob="0.737" d_score="0.90"/>
            <acceptor a_prob="0.601" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50280" g_stop="50169" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="283" r_length="112" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50062" g_stop="49958" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="388" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111">
            <donor d_prob="0.955" d_score="0.96"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49846" g_stop="49769" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="466" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362">
            <donor d_prob="0.897" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49406" g_stop="49351" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="522" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49350" i_stop="48971" i_length="380">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48970" g_stop="48913" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="580" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48912" i_stop="47832" i_length="1081">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47831" g_stop="47730" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="682" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0008H22.1" gen_strand="-" ref_id="SGN-M6549-2" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0008H22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6549-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51037" e_stop="50867"/>
          <exon e_start="50280" e_stop="50169"/>
          <exon e_start="50062" e_stop="49958"/>
          <exon e_start="49846" e_stop="49769"/>
          <exon e_start="49406" e_stop="49351"/>
          <exon e_start="48970" e_stop="48913"/>
          <exon e_start="47831" e_stop="47730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAGGTAATTTTCTGTTGTTGTTTTGTTATGTATGGATTAGTTACATACTGTACATTGCAATATGAATACTACCCATAATGCCTAATTCATGTTTTATGATTTGTTTTTGTGGTTTTGGGTTGGAATTGCTGAAATTTGAATTGGGTTTTTTGTAAAAAGTTGGGTAGGATATGGAAGTGAGGTTTAACTGAAAAGGGTTCTTCATAGAAACTTTTTAATTGAGCTAACGGAAGTGGGATTTTCATGTTGTTGAAATTGGGGAATGTATGGATATGGACGATTAATATAAATGACCCTGCAGCTAATTAGAGATTGATGGGTAGTTGATTGGTTGATATATTGATTATACGTAACTGTAAAATGACAATGGGGAGTCTTTTGGAGGTTAAAGTTGGGGTCTTTTTTACTACTCTATTATGATTGCATTTCCTACTTAAAAAGATTGAGGTGTAGTGTAGTTGGTTGAGTATTGATTGATCATAACTGTAAAATGGCAACGGGGGGAGTGGTGGAGATTAGAGTTGTAGTATTTTTACTCCTTGATTATGATTGCATTTCCTCCTTCTAGCAATTGACTGTGTGTGATCAGACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAGGTAATTTAGAGTTATCTCATTTGGACAAGAGAAATGTTTATAAAGTTCAGCTCCTCTAGTGAGGGGTGTGCATCTCTGGTCCTTTGTGCTAAACTGTTTTGTACAGGTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAGGTAGTTAGTGCTTAGCAATCTATCTATCTCTAACTCGCTTTCGTTCTTCATATATTTGATTGTTGTTAGGAGTAAGCACTCAATGCAAGCCTTTTAAACTTTTTGTTTCAGTTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAGGTATTATTTTTTGGTTTCAAAGCTAGCTAAAATCTTAGTAGCATGCAGTTTTAGGCAATGTTTGTTCACTCTTGGGGTTTTGTAAATATTTTGTATTTTCTGTTCATATAATGTAATTGAGGTGGGGGTGGATTTTGATTAGGATACTTATAGTCATTTTATTCTTTTTTCTTTACTATTCGCACAAATTTTCCCCATCTTTTACTATATGAAAATAGAATTGCTCTTCTATCCCTGGATTAATTGCAAGAATTTTCTTAGTAATTTTATTTATGATATTCTATATGTATAAGATTTGGCTGTTTAGCTTTGTTTAGGCGCAGATACTGATTTCTCTTATAAGTTTGTTATTTTTAATTTAGGTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACGGTACGTATTCTGCCAATAATGCTTTCATGACAATAGCTCTCTGAAATTAGATAGTTCTCTTGCTTGCAACTATGCGTAATTGACAATTATTTTTCAATGATTCAAAAATTAGTATAAATTACATTTGCTGAATTTAGTTGGCTGTTGTGTAATTAACACATACATGCATTAACATCTTTACCACACATATAGGTAAATGCCTTACTGACTCAACCAAAGCTATTTGTATGCAAATATTTCAGTATGCTATTAGTTTCTCTTCCCCTTCCGGTCCTTGTCCCTCGAAACATCTTTGCTTTACATTTACTGGTAGGAAATTCATGCAGCAGATTATGTAATTTTTACCCTTTTCAGTTATTAATTTTAATGCATGCTTTCAGGTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTTGTAAGTAGTAAAATATTCATCCTTCCATTCCAATCTGGTTTTCTTGTTTGCCTTTTAGGATGCTAGTTTACAAATTGTTGTAGTAAAATCATGGATAAATTCGTATTTAAGTATGATTTAGAAAATTCAGAAATTATATGAAAAATTCTGACATTGGAAGTATTTTCATCTCAAAATACAAAAATAGATATGGTTGACTTGAAAAGTCACAATCTTTTGAAACAGAGAGTAGTTATTCCGTCTTCTACAAGGGCCTCCTTTTGATTTTTTTTCTACGTTAATGTATCTATTTCTTTCTCTAGGTGATCTGCCTACCCTCTTACAATTTAAGTGTTACTTTTTATAATTGAATAGTTTATATGTGCTTATTTGAATCATTATGGATCCTTGGATGTTTCATAATAGTCATGTATGGAAAGTACAGCCGCGGCTACTCAAAATATTGGTTTCCATTCAAGCATGGCTTGAACCCAACATAAAGTGCATGAAAGCTTACTGATGCTTCAACCCATATCTACCTCTGTCCACTTCTATGAGTTCTTTTTCAAGTTCTGCACTTTTATTCTTTTGGTAATGAATGAGTTCTATGGTCAACCTTGGGGGTCTTTCAAGGGTTACTGGAACTAATATATAATGTAACCAATCATCGGAAATTTGTGCCTGAAGAAGTTTTTAGCGCCTAAGAATTTGTGCTTGAAGGTTTTCCTTTAGCTGAACCTCCTTTGTTTAAGACTTCAATCTCTTTGGTGATATGCTCTGTTTCTAAGTACTTGATACCAAAAGAAGAGACTCTGTATTGCAACGAGTAATGCTTCATAAGTGCAAGATAAGTAGATAGCAGCAGTAATTCACCGGATCTTCCGTCTACAAAAATAGAAGAGGTGTATGTTAAGGTTCGCTTCATGAAAGCAAGAAAGGAAGCAAGTTCGACCTTGCCAGAAAAAAAGAAAGATAACAGAAATAATTTTGTTAATCATTGTCATCGCTCTCTGTTAAATGCAGTTCTCACTCTCGATTTAATGAAATATTAATCTCGATTCTCCTAATGGTACTCTGTTGTTTTATGTATTATCTTTTGCAGATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTGAG</genome_strand>
        <mrna_strand>GAAAAACCCTAATCCCTTTAGCAGAGAAGAGAGTGTTGGAAGCTCAAAAATGGTGTTTACAATATCATCAAACCCAGTTCAGTTTACACATAGTACTTCTTTAATTTCTCGACCCAATCGTTATCTGAAAAGTTCTGTTCCAGTTTCAAATTTATCATTTTCTTGCTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAGTACATCAGGTTTTCCGTAAAATCTCAACTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCGAGTGATGACTCAAATCCTTATGAG..........................................................................................................GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGAAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACTCTTGCTCAG...............................................................................................................TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACGAAAAGGAAGCAGGGTGTCACCTTTGGCTCTTTTAAG..........................................................................................................................................................................................................................................................................................................................................................................GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTGTGCCATGGGGTCCACG............................................................................................................................................................................................................................................................................................................................................................................................GTTCACCAAATCTGATGACAAAGATATCAAGATCAACTTGGCAATTTCAGCTGTATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="28240" PGL_stop="22403"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28240" e_stop="28219"/>
            <exon e_start="27614" e_stop="27553"/>
            <exon e_start="26366" e_stop="25914"/>
            <exon e_start="25476" e_stop="25365"/>
            <exon e_start="24847" e_stop="24797"/>
            <exon e_start="24579" e_stop="24508"/>
            <exon e_start="24435" e_stop="24303"/>
            <exon e_start="24227" e_stop="24169"/>
            <exon e_start="23519" e_stop="23419"/>
            <exon e_start="22812" e_stop="22746"/>
            <exon e_start="22659" e_stop="22403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.892" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.578" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.532" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.972"/>
          <exon-intron don_prob="0.994" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.917" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28240" e_stop="28219" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.892" acc_prob="0.990">
            <gDNA_intron_boundary i_start="28218" i_stop="27615" i_length="604"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27614" e_stop="27553" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="27552" i_stop="26367" i_length="1186"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26366" e_stop="25914" e_length="453"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.578">
            <gDNA_intron_boundary i_start="25913" i_stop="25477" i_length="437"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25476" e_stop="25365" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25364" i_stop="24848" i_length="517"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24847" e_stop="24797" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.532">
            <gDNA_intron_boundary i_start="24796" i_stop="24580" i_length="217"/>
          </intron>
          <exon e_serial="6" e_score="0.972">
            <gDNA_exon_boundary e_start="24579" e_stop="24508" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24507" i_stop="24436" i_length="72"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="24435" e_stop="24303" e_length="133"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.989">
            <gDNA_intron_boundary i_start="24302" i_stop="24228" i_length="75"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24227" e_stop="24169" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="24168" i_stop="23520" i_length="649"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="23519" e_stop="23419" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.978" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23418" i_stop="22813" i_length="606"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="22812" e_stop="22746" e_length="67"/>
          </exon>
          <intron i_serial="10" don_prob="0.981" acc_prob="0.917">
            <gDNA_intron_boundary i_start="22745" i_stop="22660" i_length="86"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="22659" e_stop="22403" e_length="257"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28240" stop="28219"/>
              <exon start="27614" stop="27553"/>
              <exon start="26366" stop="25914"/>
              <exon start="25476" stop="25365"/>
              <exon start="24847" stop="24797"/>
              <exon start="24579" stop="24508"/>
              <exon start="24435" stop="24303"/>
              <exon start="24227" stop="24169"/>
              <exon start="23519" stop="23419"/>
              <exon start="22812" stop="22746"/>
              <exon start="22659" stop="22403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6548" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCTAATTCATAAAATTTAAG : TTGAGTGAATTGTCTCTCTAGCATTGCTTGAATTGAAGAATCAGAGAAGAGAAGCTTATAAA : TTCAGTGAAGATGGTGGTAAGAACTGTGGATCTTCGCTCAGACACCGTCACTAGACCAACTGAAGCCATGCGGAACGCAATGGCGAATGCTGAAGTGGATGATGATGTCTTAGGTTATGATCCAACAGCCCAACGCCTTGAAGCAGAGATGGCAAGGATAACGGGCAAGGAAGCAGGATTATTTGTTCCTTCTGGCACTATGGGTAACCTTATCAGTGTGCTGACTCATTGCCAAATCAGGGGCAGTGAGATTATTCTCGGTGATTATTCCCATATCCATATTTATGAAAATGGAGGCATTTCCACCCTTGGAGGTGTTCATCCAAGGACAGTGAAGAACAATGAAGATGGTACGATGGATCTTGATCTGATTGAAGCTGCGATTCGAGATCCTAGCTTTGAAATATGTTACCCAACCACTAGGCTGATCTGCTTGGAGAATTCGCAAGCTCA : CTCAGGGGGCAGATGCCTTTCTGCGGAGTACACAGACAAAGTTGGAGAGCTAGCAAAGAAGTATGGTCTGAAGCTCCACATTGATGGAGCTCGTATATTCAATGCATCAGTT : GCACTTGGAGTGCCTGTTCATAGGCTTGTACAGGCAGCTGATTCAGTTTCG : GTATGCTTATCAAAAGGTCTTGGTGCTCCAGTTGGATCTGTGATTGTTGGTTCGAAGAGCTTCATTGCCAGG : GCCAAAATCCTGAGGAAGACTCTAGGCGGTGGAATGAGGCAAATTGGAGTCCTTTGCGCTGCTGCTTTTACCGCTTTACAAGAGAATCTTGTTAAGCTGGAAGGAGATCACAGAAAGGCTAAGATTTTGGCTG : CGGAACTTAACAAAATCAAAGGGCTTAAAGTTGATGTTGCCACTGTAGAGACCAACATT : GTATATTGCGACATACTGAAGGGGTCAAGGATCAGTGAAGCAGAGTTGGTCAAGACTTTGGAACAATATGGTTTACTTATACTACCAGAAGGCCCACTGAG : AGTCAGATTTGTTCTACACCACCAGATTTCAGAAAGTGATGTACACTATGCAGTGTCTTGCATTCAG : CGAGCTTTAGCAGGAGTGGCTGAAGAAAATGGTGACAAGTAACCGGATAAATCGGTTTCAGACATGATCTCTTTCTGTTAGAAACTGTTCCAAATGTTTACATGGGAGAGAGACCAGTTTCATTTTCAAATTTTAGTCAAATCTTTAAACTTCTCATTTCATGTCCTTTTAATGATCAAAAGACTTTGTTTGTTCTTCATATGTTTGTTGTTGGACTAGTTTGTCCTAATGATTTAGTAAGAAATGAATGTTGGCTC</gDNA_template>
            <first_frame> Q  L  I  H  K  I  *   : V  E  *  I  V  S  L  A  L  L  E  L  K  N  Q  R  R  E  A  Y  K  :  F  S  E  D  G  G  K  N  C  G  S  S  L  R  H  R  H  *  T  N  *  S  H  A  E  R  N  G  E  C  *  S  G  *  *  C  L  R  L  *  S  N  S  P  T  P  *  S  R  D  G  K  D  N  G  Q  G  S  R  I  I  C  S  F  W  H  Y  G  *  P  Y  Q  C  A  D  S  L  P  N  Q  G  Q  *  D  Y  S  R  *  L  F  P  Y  P  Y  L  *  K  W  R  H  F  H  P  W  R  C  S  S  K  D  S  E  E  Q  *  R  W  Y  D  G  S  *  S  D  *  S  C  D  S  R  S  *  L  *  N  M  L  P  N  H  *  A  D  L  L  G  E  F  A  S  S  :  L  R  G  Q  M  P  F  C  G  V  H  R  Q  S  W  R  A  S  K  E  V  W  S  E  A  P  H  *  W  S  S  Y  I  Q  C  I  S   : C  T  W  S  A  C  S  *  A  C  T  G  S  *  F  S  F   : G  M  L  I  K  R  S  W  C  S  S  W  I  C  D  C  W  F  E  E  L  H  C  Q   : G  Q  N  P  E  E  D  S  R  R  W  N  E  A  N  W  S  P  L  R  C  C  F  Y  R  F  T  R  E  S  C  *  A  G  R  R  S  Q  K  G  *  D  F  G  C :   G  T  *  Q  N  Q  R  A  *  S  *  C  C  H  C  R  D  Q  H   : C  I  L  R  H  T  E  G  V  K  D  Q  *  S  R  V  G  Q  D  F  G  T  I  W  F  T  Y  T  T  R  R  P  T  E  :  S  Q  I  C  S  T  P  P  D  F  R  K  *  C  T  L  C  S  V  L  H  S   : A  S  F  S  R  S  G  *  R  K  W  *  Q  V  T  G  *  I  G  F  R  H  D  L  F  L  L  E  T  V  P  N  V  Y  M  G  E  R  P  V  S  F  S  N  F  S  Q  I  F  K  L  L  I  S  C  P  F  N  D  Q  K  T  L  F  V  L  H  M  F  V  V  G  L  V  C  P  N  D  L  V  R  N  E  C  W  L </first_frame>
            <second_frame>  S  *  F  I  K  F  K  :  L  S  E  L  S  L  *  H  C  L  N  *  R  I  R  E  E  K  L  I  N :   S  V  K  M  V  V  R  T  V  D  L  R  S  D  T  V  T  R  P  T  E  A  M  R  N  A  M  A  N  A  E  V  D  D  D  V  L  G  Y  D  P  T  A  Q  R  L  E  A  E  M  A  R  I  T  G  K  E  A  G  L  F  V  P  S  G  T  M  G  N  L  I  S  V  L  T  H  C  Q  I  R  G  S  E  I  I  L  G  D  Y  S  H  I  H  I  Y  E  N  G  G  I  S  T  L  G  G  V  H  P  R  T  V  K  N  N  E  D  G  T  M  D  L  D  L  I  E  A  A  I  R  D  P  S  F  E  I  C  Y  P  T  T  R  L  I  C  L  E  N  S  Q  A  H :   S  G  G  R  C  L  S  A  E  Y  T  D  K  V  G  E  L  A  K  K  Y  G  L  K  L  H  I  D  G  A  R  I  F  N  A  S  V  :  A  L  G  V  P  V  H  R  L  V  Q  A  A  D  S  V  S  :  V  C  L  S  K  G  L  G  A  P  V  G  S  V  I  V  G  S  K  S  F  I  A  R  :  A  K  I  L  R  K  T  L  G  G  G  M  R  Q  I  G  V  L  C  A  A  A  F  T  A  L  Q  E  N  L  V  K  L  E  G  D  H  R  K  A  K  I  L  A   : A  E  L  N  K  I  K  G  L  K  V  D  V  A  T  V  E  T  N  I  :  V  Y  C  D  I  L  K  G  S  R  I  S  E  A  E  L  V  K  T  L  E  Q  Y  G  L  L  I  L  P  E  G  P  L  R :   V  R  F  V  L  H  H  Q  I  S  E  S  D  V  H  Y  A  V  S  C  I  Q  :  R  A  L  A  G  V  A  E  E  N  G  D  K  *  P  D  K  S  V  S  D  M  I  S  F  C  *  K  L  F  Q  M  F  T  W  E  R  D  Q  F  H  F  Q  I  L  V  K  S  L  N  F  S  F  H  V  L  L  M  I  K  R  L  C  L  F  F  I  C  L  L  L  D  *  F  V  L  M  I  *  *  E  M  N  V  G   </second_frame>
            <third_frame>   A  N  S  *  N  L  S :   *  V  N  C  L  S  S  I  A  *  I  E  E  S  E  K  R  S  L  *   : I  Q  *  R  W  W  *  E  L  W  I  F  A  Q  T  P  S  L  D  Q  L  K  P  C  G  T  Q  W  R  M  L  K  W  M  M  M  S  *  V  M  I  Q  Q  P  N  A  L  K  Q  R  W  Q  G  *  R  A  R  K  Q  D  Y  L  F  L  L  A  L  W  V  T  L  S  V  C  *  L  I  A  K  S  G  A  V  R  L  F  S  V  I  I  P  I  S  I  F  M  K  M  E  A  F  P  P  L  E  V  F  I  Q  G  Q  *  R  T  M  K  M  V  R  W  I  L  I  *  L  K  L  R  F  E  I  L  A  L  K  Y  V  T  Q  P  L  G  *  S  A  W  R  I  R  K  L   : T  Q  G  A  D  A  F  L  R  S  T  Q  T  K  L  E  S  *  Q  R  S  M  V  *  S  S  T  L  M  E  L  V  Y  S  M  H  Q  L :   H  L  E  C  L  F  I  G  L  Y  R  Q  L  I  Q  F  R :   Y  A  Y  Q  K  V  L  V  L  Q  L  D  L  *  L  L  V  R  R  A  S  L  P  G :   P  K  S  *  G  R  L  *  A  V  E  *  G  K  L  E  S  F  A  L  L  L  L  P  L  Y  K  R  I  L  L  S  W  K  E  I  T  E  R  L  R  F  W  L  :  R  N  L  T  K  S  K  G  L  K  L  M  L  P  L  *  R  P  T  L :   Y  I  A  T  Y  *  R  G  Q  G  S  V  K  Q  S  W  S  R  L  W  N  N  M  V  Y  L  Y  Y  Q  K  A  H  *   : E  S  D  L  F  Y  T  T  R  F  Q  K  V  M  Y  T  M  Q  C  L  A  F  S :   E  L  *  Q  E  W  L  K  K  M  V  T  S  N  R  I  N  R  F  Q  T  *  S  L  S  V  R  N  C  S  K  C  L  H  G  R  E  T  S  F  I  F  K  F  *  S  N  L  *  T  S  H  F  M  S  F  *  *  S  K  D  F  V  C  S  S  Y  V  C  C  W  T  S  L  S  *  *  F  S  K  K  *  M  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27578" stop="27553"/>
                    <exon start="26366" stop="25914"/>
                    <exon start="25476" stop="25365"/>
                    <exon start="24847" stop="24797"/>
                    <exon start="24579" stop="24508"/>
                    <exon start="24435" stop="24303"/>
                    <exon start="24227" stop="24169"/>
                    <exon start="23519" stop="23419"/>
                    <exon start="22812" stop="22746"/>
                    <exon start="22659" stop="22618"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIREEKLINSVKMVVRTVDLRSDTVTRPTEAMRNAMANAEVDDDVLGYDPTAQRLEAEMARITGKEAGLFVPSGTMGNLISVLTHCQIRGSEIILGDYSHIHIYENGGISTLGGVHPRTVKNNEDGTMDLDLIEAAIRDPSFEICYPTTRLICLENSQAHSGGRCLSAEYTDKVGELAKKYGLKLHIDGARIFNASVALGVPVHRLVQAADSVSVCLSKGLGAPVGSVIVGSKSFIARAKILRKTLGGGMRQIGVLCAAAFTALQENLVKLEGDHRKAKILAAELNKIKGLKVDVATVETNIVYCDILKGSRISEAELVKTLEQYGLLILPEGPLRVRFVLHHQISESDVHYAVSCIQRALAGVAEENGDK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22609" stop="22403"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGFRHDLFLLETVPNVYMGERPVSFSNFSQIFKLLISCPFNDQKTLFVLHMFVVGLVCPNDLVRNECWL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="43414" PGL_stop="42908"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43414" e_stop="42908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="43414" e_stop="42908" e_length="507"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43414" stop="42908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2276" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATGTCCGTCAAAGGAAGAGAAAAAGGAGAGGTATTGATTACAATGCTGAAATTCCCTTTGAAAAGAAGCCTCCTCCAGGTTTCTATGATGTCACTGAGGAAGACCGTCCAGTTGATCAACCTAAGTTTCCAACTACCATTGAGGAACTAGAAGGTGAAAGGAGAGTCGATAAGGAAGCTCGCCTAAGGAAGCAGGATATTGCGAGGAACAAAATTGCAGAGAGACAGGATGCCCCTACATCCATATTGCATGCGAACAAACTTAATGATCCAGAAGCAGTGAGGAAGAGGTCGAAACTGAATCTTCCAGCACCACAGATTCCAGATCATGAATTGGAGGCCATAGCAAAGATAGGTATTGCCAGTGATCTAATTGGGGGAGATGAACTGTCCGAAGGGAATGCTGCAACGCGTGCTCTTCTTGCAAATTATGCCCAGACACCACAACATGCTATGACTCCTATGCGAACACCTCAAAGAACCCCTTCAACTAAGCAAGACGCCAT</gDNA_template>
            <first_frame> R  C  P  S  K  E  E  K  K  E  R  Y  *  L  Q  C  *  N  S  L  *  K  E  A  S  S  R  F  L  *  C  H  *  G  R  P  S  S  *  S  T  *  V  S  N  Y  H  *  G  T  R  R  *  K  E  S  R  *  G  S  S  P  K  E  A  G  Y  C  E  E  Q  N  C  R  E  T  G  C  P  Y  I  H  I  A  C  E  Q  T  *  *  S  R  S  S  E  E  E  V  E  T  E  S  S  S  T  T  D  S  R  S  *  I  G  G  H  S  K  D  R  Y  C  Q  *  S  N  W  G  R  *  T  V  R  R  E  C  C  N  A  C  S  S  C  K  L  C  P  D  T  T  T  C  Y  D  S  Y  A  N  T  S  K  N  P  F  N  *  A  R  R  H </first_frame>
            <second_frame>  D  V  R  Q  R  K  R  K  R  R  G  I  D  Y  N  A  E  I  P  F  E  K  K  P  P  P  G  F  Y  D  V  T  E  E  D  R  P  V  D  Q  P  K  F  P  T  T  I  E  E  L  E  G  E  R  R  V  D  K  E  A  R  L  R  K  Q  D  I  A  R  N  K  I  A  E  R  Q  D  A  P  T  S  I  L  H  A  N  K  L  N  D  P  E  A  V  R  K  R  S  K  L  N  L  P  A  P  Q  I  P  D  H  E  L  E  A  I  A  K  I  G  I  A  S  D  L  I  G  G  D  E  L  S  E  G  N  A  A  T  R  A  L  L  A  N  Y  A  Q  T  P  Q  H  A  M  T  P  M  R  T  P  Q  R  T  P  S  T  K  Q  D  A   </second_frame>
            <third_frame>   M  S  V  K  G  R  E  K  G  E  V  L  I  T  M  L  K  F  P  L  K  R  S  L  L  Q  V  S  M  M  S  L  R  K  T  V  Q  L  I  N  L  S  F  Q  L  P  L  R  N  *  K  V  K  G  E  S  I  R  K  L  A  *  G  S  R  I  L  R  G  T  K  L  Q  R  D  R  M  P  L  H  P  Y  C  M  R  T  N  L  M  I  Q  K  Q  *  G  R  G  R  N  *  I  F  Q  H  H  R  F  Q  I  M  N  W  R  P  *  Q  R  *  V  L  P  V  I  *  L  G  E  M  N  C  P  K  G  M  L  Q  R  V  L  F  L  Q  I  M  P  R  H  H  N  M  L  *  L  L  C  E  H  L  K  E  P  L  Q  L  S  K  T  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43413" stop="42910"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVRQRKRKRRGIDYNAEIPFEKKPPPGFYDVTEEDRPVDQPKFPTTIEELEGERRVDKEARLRKQDIARNKIAERQDAPTSILHANKLNDPEAVRKRSKLNLPAPQIPDHELEAIAKIGIASDLIGGDELSEGNAATRALLANYAQTPQHAMTPMRTPQRTPSTKQDA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="51037" PGL_stop="47710"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51037" e_stop="50867"/>
            <exon e_start="50280" e_stop="50169"/>
            <exon e_start="50062" e_stop="49958"/>
            <exon e_start="49846" e_stop="49769"/>
            <exon e_start="49406" e_stop="49351"/>
            <exon e_start="48970" e_stop="48913"/>
            <exon e_start="47831" e_stop="47710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.737" acc_prob="0.601" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.897" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51037" e_stop="50867" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.737" acc_prob="0.601">
            <gDNA_intron_boundary i_start="50866" i_stop="50281" i_length="586"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50280" e_stop="50169" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50168" i_stop="50063" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50062" e_stop="49958" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.949">
            <gDNA_intron_boundary i_start="49957" i_stop="49847" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49846" e_stop="49769" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.897" acc_prob="0.991">
            <gDNA_intron_boundary i_start="49768" i_stop="49407" i_length="362"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49406" e_stop="49351" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="49350" i_stop="48971" i_length="380"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="48970" e_stop="48913" e_length="58"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.985">
            <gDNA_intron_boundary i_start="48912" i_stop="47832" i_length="1081"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47831" e_stop="47710" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51037" stop="50867"/>
              <exon start="50280" stop="50169"/>
              <exon start="50062" stop="49958"/>
              <exon start="49846" stop="49769"/>
              <exon start="49406" stop="49351"/>
              <exon start="48970" stop="48913"/>
              <exon start="47831" stop="47730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6549-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51036" stop="50867"/>
              <exon start="50280" stop="50169"/>
              <exon start="50062" stop="49958"/>
              <exon start="49846" stop="49769"/>
              <exon start="49406" stop="49351"/>
              <exon start="48970" stop="48913"/>
              <exon start="47831" stop="47710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6549" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAACCCTAATCCCTTTAGCAGAGAAGAAAGAAGGAGTAGCTCAAAAATGGTGTTTACAATATCATCAAACCCTGTTCAGTTTACACATACTACTTCTTTAAATGCTCGACCCAATTGTTATCTCAAAGCTTCTGTTCCAGTTTCAAATTTATCGTTTTCTTTCTTCAG : ACATGAATACATCAGGTTTTCTGTAAAATCTCGCCTGAATAAAAGGATGGTCTGTGCTGCTGCTTCAGCTGCTGGAAGTTCTAGTTCTAGCGATGACTCAAATCCTTATGAG : GTTCTGGGTGTAAACCCTATTGAGGGATTTGACATGGTTAAGGCAGCATATGCAAGGAGAAGGAAAGATGCTGAGCGGAGGGGTGATGAAGCAACGCTTGCTCAG : TTGGAGAAGGCTTATGACAAAATCATGATGTCACAGTTAACAAAAAGGAAGCAGGGTGTCACTTTTGGCTCGTTTAAG : GTATCTAAAGAGGTACGATATGCTGATAAGCAGCCTATTTTGCCATGGGGTCCACG : GTTCACCAAATCTGATGACAAAGATATCAAAATCAACTTGGCAATTTCAGCTGTATTT : ATAGCTTGGGTTTTTATAAATCGTAATGCTGAGTGGAAGCCTTTACAGTTTTTGGCCTTCGCCTTTGTATATAGGATATTTGAGAAATTAAAAGCATTTGAGCCTCCAACTCCCACGTTTAC</gDNA_template>
            <first_frame> G  K  P  *  S  L  *  Q  R  R  K  K  E  *  L  K  N  G  V  Y  N  I  I  K  P  C  S  V  Y  T  Y  Y  F  F  K  C  S  T  Q  L  L  S  Q  S  F  C  S  S  F  K  F  I  V  F  F  L  Q  :  T  *  I  H  Q  V  F  C  K  I  S  P  E  *  K  D  G  L  C  C  C  F  S  C  W  K  F  *  F  *  R  *  L  K  S  L  *   : G  S  G  C  K  P  Y  *  G  I  *  H  G  *  G  S  I  C  K  E  K  E  R  C  *  A  E  G  *  *  S  N  A  C  S   : V  G  E  G  L  *  Q  N  H  D  V  T  V  N  K  K  E  A  G  C  H  F  W  L  V  *   : G  I  *  R  G  T  I  C  *  *  A  A  Y  F  A  M  G  S  T  :  V  H  Q  I  *  *  Q  R  Y  Q  N  Q  L  G  N  F  S  C  I   : Y  S  L  G  F  Y  K  S  *  C  *  V  E  A  F  T  V  F  G  L  R  L  C  I  *  D  I  *  E  I  K  S  I  *  A  S  N  S  H  V  Y </first_frame>
            <second_frame>  E  N  P  N  P  F  S  R  E  E  R  R  S  S  S  K  M  V  F  T  I  S  S  N  P  V  Q  F  T  H  T  T  S  L  N  A  R  P  N  C  Y  L  K  A  S  V  P  V  S  N  L  S  F  S  F  F  R :   H  E  Y  I  R  F  S  V  K  S  R  L  N  K  R  M  V  C  A  A  A  S  A  A  G  S  S  S  S  S  D  D  S  N  P  Y  E  :  V  L  G  V  N  P  I  E  G  F  D  M  V  K  A  A  Y  A  R  R  R  K  D  A  E  R  R  G  D  E  A  T  L  A  Q  :  L  E  K  A  Y  D  K  I  M  M  S  Q  L  T  K  R  K  Q  G  V  T  F  G  S  F  K  :  V  S  K  E  V  R  Y  A  D  K  Q  P  I  L  P  W  G  P  R :   F  T  K  S  D  D  K  D  I  K  I  N  L  A  I  S  A  V  F  :  I  A  W  V  F  I  N  R  N  A  E  W  K  P  L  Q  F  L  A  F  A  F  V  Y  R  I  F  E  K  L  K  A  F  E  P  P  T  P  T  F   </second_frame>
            <third_frame>   K  T  L  I  P  L  A  E  K  K  E  G  V  A  Q  K  W  C  L  Q  Y  H  Q  T  L  F  S  L  H  I  L  L  L  *  M  L  D  P  I  V  I  S  K  L  L  F  Q  F  Q  I  Y  R  F  L  S  S   : D  M  N  T  S  G  F  L  *  N  L  A  *  I  K  G  W  S  V  L  L  L  Q  L  L  E  V  L  V  L  A  M  T  Q  I  L  M  R :   F  W  V  *  T  L  L  R  D  L  T  W  L  R  Q  H  M  Q  G  E  G  K  M  L  S  G  G  V  M  K  Q  R  L  L  S :   W  R  R  L  M  T  K  S  *  C  H  S  *  Q  K  G  S  R  V  S  L  L  A  R  L  R :   Y  L  K  R  Y  D  M  L  I  S  S  L  F  C  H  G  V  H   : G  S  P  N  L  M  T  K  I  S  K  S  T  W  Q  F  Q  L  Y  L :   *  L  G  F  L  *  I  V  M  L  S  G  S  L  Y  S  F  W  P  S  P  L  Y  I  G  Y  L  R  N  *  K  H  L  S  L  Q  L  P  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0008H22.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51036" stop="50867"/>
                    <exon start="50280" stop="50169"/>
                    <exon start="50062" stop="49958"/>
                    <exon start="49846" stop="49769"/>
                    <exon start="49406" stop="49351"/>
                    <exon start="48970" stop="48913"/>
                    <exon start="47831" stop="47712"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENPNPFSREERRSSSKMVFTISSNPVQFTHTTSLNARPNCYLKASVPVSNLSFSFFRHEYIRFSVKSRLNKRMVCAAASAAGSSSSSDDSNPYEVLGVNPIEGFDMVKAAYARRRKDAERRGDEATLAQLEKAYDKIMMSQLTKRKQGVTFGSFKVSKEVRYADKQPILPWGPRFTKSDDKDIKINLAISAVFIAWVFINRNAEWKPLQFLAFAFVYRIFEKLKAFEPPTPTF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 4 chains have been computed
$ 
$ memory statistics:
$ 9024 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2256 bytes was the average size of a spliced alignment
$ 8392 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2797 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 4 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 15:09:42
-->
