<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 17:29:35"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729949" ref_strand="+" ref_description="SGN-E729949 [LA22CD07]">
      <seq>cttgatttcttccattaatggagatggaaacggttcccaacggcagttcgccgtcatccaccaccaccactaccagcgctgccgtcactacaaacgccgcatccgcagcggcggtggctgctgccatctcacctaacgcaccttcgtcaaaactgaaccagctgtccgaatcgctcaaattggagcaccagttccttcgtgttccctttgagcattacaagaaggcgatccgcgctaatcatcgtattgttgagaaggaactctccgctgttattaatggagtttcagatgctgctgaatctgaaatgtcccgtgatgatgctgtacatcaccttaattcacttgtatccagattgcaaggcctcaaaagaaagtcggaagaggggagtcgaacagagaacctgcaagcgcaaagatgcagagcacggctagatcatctagaatctgctgatccagaaaatttatcagactggcataacacccgtttgaagtggatactggtggattacatgctgcggatgtcatattataacactgctgtaaagcttgctgaaagcagcaatatccaggatcttgttgacgttgatgtctttcatgaagcaaaaaaggtcattgatgctctccaaaacaaggaggtaactcctgctttagcctggtgtgctgataacaaatccaggctaaagaaatcaaagagcaaatttgaattccagttgagactgcaagagttcatagagttggtaaaatctgaaaacatgaatgcgggccattacatatgctccgaaatatctttcaccttggggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="1988" stop="10842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2288" g_stop="2661" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2662" i_stop="3334" i_length="673">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.543" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3335" g_stop="3529" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="569" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3530" i_stop="6232" i_length="2703">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6233" g_stop="6355" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="692" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6356" i_stop="10433" i_length="4078">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10434" g_stop="10542" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="802" r_length="110" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E729949" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2288" e_stop="2661"/>
          <exon e_start="3335" e_stop="3529"/>
          <exon e_start="6233" e_stop="6355"/>
          <exon e_start="10434" e_stop="10542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTTCTTCCATTAATGGAGATGGAAACGGTTCCCAACGGCAGTTCGCCGTCATCCACCACCACCACTACCAGCGCTGCCGTCACTACAAACGCCGCATCCGCAGCGGCGGTGGCTGCTGCCATCTCACCTAACGCACCTTCGTCAAAACTGAACCAGCTGTCCGAATCGCTCAAATTGGAGCACCAGTTCCTTCGTGTTCCCTTTGAGCATTACAAGAAGGCGATCCGCGCTAATCATCGTATTGTTGAGAAGGAACTCTCCGCTGTTATTAATGGAGTTTCAGATGCTGCTGAATCTGAAATGTCCCGTGATGATGCTGTACATCACCTTAATTCACTTGTATCCAGATTGCAAGGCCTCAAAAGAAAGGTACTTAGAGTAGATCAATTACGATATTCTGTTTGTTTACTGTGTAAGTTTTGATTATGGAAGCTAGACTTCTATAATTAGGTGTGGTATTCTGTTCAGTTACTGTGTAGGATTGAAAGGTATCGAAATTTCCCCTATCCATTGTGTATATATCATATTCAATTAGTGAATAATGAAGGAAGTACCCAAAAATGTGTCTGTAACTGTTTATCACACTTTGACTGTATAAGATTGGATATTGGATGACGGAATCAAAACTTTCCTCTATATATTTTGTGTGCGTGTGTAAGAGAGAGAGAGCATGAAGTGATAAATCTTGTAAAGTTGATTACATTCCAACATGTAGCTTTGAAATTCTTCAGATGTGATTTTTGACCAGTTCAAATTAGGTAAAGGTGGGTTTATATTGTGAGAACAATCATTTTATTGTATAAGATTGGATAAATTAAACGAAGCTTCTATAGGTGTGTATGTGTGTGTTTGATTTATATGTTCTTTGTTGAATTTTGGTTCCTAAAATGTATCCCACTTACTCATTTAGTTAGTCGGTTGGTGACTAATATGTTTGAAAAGCTAAAACAACCCAACACGAAGCTTTTTGAAAGCTTCAGTAATCCTTTTAATCAGTTAAAAATGATGTATCATAATGGTTTTGTATTGTGAGAACAATTAGTCGGAAGAGGGGAGTCGAACAGAGAACCTGCAAGCGCAAAGATGCAGAGCACGGCTAGATCATCTAGAATCTGCTGATCCAGAAAATTTATCAGACTGGCATAACACCCGTTTGAAGCGGATACTGGTGGATTACATGCTGCGGATGTCATATTATAACACTGCTGTAAAGCTTGCTGAAAGCAGCAATATCCAGGTGGGTTTTCTTTGTTCGTTTACCGTTTATTATGTGGTATTATTTATCATGGTTAAAGGGTCATGTTGTTCCAGTTTTTTGAGTCACACAAGCTCCCCTTGTTTGACAAGTTTCTTGGATCTAGCATATAACTATACTTAAGACGTCGGTTGTTTAATGTTTGGTGTACGTCTTAGTATATGGCTGATTTTGGTCTTTTGATTTATGAATTGTTTCCCTGATTAAAAAAAACAACAACTATATTTCGTTTTTTTATCTTAACTTTCAATGGTTGTTTGTTGTTTAGGAGGTACAATTTAGAAGTGTGTTTGCCAACCATCAAGGGAATAGGACTGGTAAAGAAATAGAACTATATTGTATTACTTTTCTTAGATGGAGGATTATCATTTATGTTTGGATGTTTGGTGGGATTAGGAGGAAGTGAATAGATATGTAAGTTCCTCTTGATCTATTTTTGAGAAATTAAATCCTCTTTAAATCTTTTCTGGAGGGGTATCAAACTTCACATTTACTTCCTTATCGAACAGGAGACCAATGTGTATTGCCTCTTCTTCATCTTTCTCCTTTTCACATCTACCAAACATAATTTTGAAAACAAGTTCATTCTTCATGAATGTATACGAATGTTTCTTCATTGATCTCTGTACATTTTACGTTTAGTTTCTACTAGTTCTCTCTGTGAGCAGTCCCTTCGGGTTACAATAATAAAATTCTTAGTACTTTTGAGAAGGGAAGAATTCCTTCTGGCTTTCTCCGGTTTTCATAAGTAAATGTAATTTATTGTACTTTTCTTAGTTTCTTGTTTTTCTGTGGTTTTGTATCGTCTTTTCCCCTTATTGGGTGACGATTGATGCGATAGGTGGATTTGGGAAGGGCAATACTAGCTCTTGTTTTTATTTAACTGACTAATGTCGGGCAGAAGGACTACAAGTGCCTACTTACCTATAAATTATAATAATGATACAAGAACTACGCCTCAATCCCAAGCGAGTTAGGATCAGCTATTTGAATGTTCACTGTCCGTATAGCTCCATTTAAGTCCATCTCAGTCCAAAGTAATTGGAGTAATAATTTAACGAAAGAAAAGAGGAGAAAGACAAAAAAAATTGAAGGCACAACAATGCAACTTTGCATTGGAAGGATTGATATTTTGCTTCATCTGTTATGGAACAACCGAAGAAGAAGGAAAAGCTTTTTTATCTTTCCTTCTCCGAGAACCGTAGCGTGTTTGATATTGAACAAAAGTTGACATAGGTTATTTTGCACATGATGTTCCATTGATTCATTTTTTCCTTCTCTTTGTTGTCAATATGCACTACTTTTCTCAGGTTAGGATGCTGCTTCTGCTCCCAACCTTAAGTAATTATCTTGAATATGTTTGTCTTTTTGGGTCGGATACATTACCGCTGACAAGTGTTTCTGGATGTAGTTGCCTTGTTCTTCCAAAGTATTCCAGCTCTGTGGAAGATTTAAGGCATTAAAATAGATTCAGACCTAGCTTATCAGGATTCAGGAAAAAGGATTTCCATGTATATTTCATTTTTCTAAGTTGCCCATTATATATGTTAGATAGTTTTTTTGAAAAATGTCCATTTTGTGGTAATATATCTGTTATCTTTCTACATATCATGTACGAGTCTACATTTATAAGTATAAGGAAAACCTTTTTAAAAAAATAAACATAGAAATAATGAGGCTTTCTTGCCAAGATCGAAACTTATAGGGAAATTGGGACGGCAAGCTGGAATATGCTTTTTGCAAGTCATGAGAAAACAGAGTTGATCTGGGGACATTTCATCCATTGGGGAGAGGTCACAACTAGGAAGGTCTAAAGAAGGAATTCAACGATAGGGTGGTTGAGTGGTTTTGCTCTCTGGTTTTTCTGCCTATAGAAAGTACATTATAGCAATGGTGCCAACACCTTTTTCAAATGGTTCATAGCACTCACAAAATTTGTTCGTGGTGCCAAACTATAATCTGTTTGCCTGTAGGGTGCACAAGGATATTAAGTGAGCATGATTGGCATGCATAATCCATTTAGTCCTGCTTTTTCTTTACCAAAAAGAATCCCGTAGTCCTGCTTTGTTGTGTTTACTGTGACAATTTCTACCACTCAATCATCATAAATATAAAAATGTATTTTCTAAACTAGAAGCCACTATTTTTGAACTTTTTACTCAAGAATTGGTAATTCGTGCTTCCATAATATTTTTAGAGTATTTTGGGTTATTGTCGTATGGTTTCAACCAATATTCCATTTTGGTATTTAAATGAATTTCTGATGAGAATCAACTATCATTTTGATTGCAATTTCACCTCTCTTTGTTGTACACCTTGTATACGATTACTCCCATCACTTCAACAAACTGTTAATTTCATGTTTTCATCAGTGAGGCAATATTTCCTATAGTTGAGAACTTTGATGTGACCTCATTATAACATTTAAGATAGACATTTAAAACCTAATCCATACAGGATCTGGAGGCTCAAGCCGTGTAGTTAAATTTTAATACAACTTTTAGGTGATGCTGGTTCTTGCACTTGGTTTAATCTATCTTTATGATGTGTTTACTTGAATAATGCAGTAACTATGTCGGCTACCCAAATTGATGCTTCTTTTTGTAGAGTCGATTGTGCTTGTGAATTTCTTTAGCTGCAAAATTTTTTAGCCGTTGTGATTAAGTATGGTCTTTTCTATTCTAGGATCTTGTTGACGTTGATGTCTTTCATGAAGCAAAAAAGGTCATTGATGCTCTCCAAAACAAGGAGGTAACTCCTGCTTTAGCCTGGTGTGCTGATAACAAATCCAGGCTAAAGAAATCAAAGGTACGATTATTTCTGTTTCTTTGAGCTTGTCTTTAATATTCTTATTACTGCTTTAACAATTCTATGTTTGTATTGTAATCAGCGACAAAAGTGATATTTTCTTCATGTGGCTAACCACTAATTCTGGTTTCAAGAAGATGTTATTCAATTCTGTAGCTCAAATGTGAGAAAATATGAAAAAGTCTCAGATCAGCCTCTTATCATGTTTACCGGGTTGAGTGGATCTCCTTCTGATTAATTTGATGGACATAAAGTTCAATTAGTGTATGTTAGACACAGATAGCATTCGATGACTGCAGACATTTTGGGCTGCCAATGTGCAGAACATAGATAAAAGTTAGTGAAAGGGTGAAAACCTATGTGAAGCCTGATGGTTTTTCAATTGAGAAAGGCATCCCATTGTGTTTGATGGGTTTTTAGCGTTTGTGAAGCTTCAGATATCCCTTTTTGAAACCAATAGAGTGAACAGAAGTTCTGCTTGGGTCTACTTGTTTCACTTCATGGTTTTTGAATGAAGGTAATCTCAAGCACACCTTCAGCAAAAAAAAGGTATCTCGAGCATCATATGCTTAAAGTGGATTATGAGTTTTGAACTTTTGTGCGTTGCTTTTCATGGGTTAAAGAAACTTCTCTGGAAATCCCACTGTTAATAAAAACCTTATCAAGAGGAAATTTCTCTGGACAAATCAGTCTAGCTTATGCCGTAGGAAGATTATAAGATGGACGCACATCAATTGAGATTTTCGTTCTTCACCTTTCTCATCTGCAATGGATTTCAGAGATTAATTGTACTATCCTTGCTTTGCTGTAAAGATTGGGATGTCCGTTCTGGACTGCATCTTCTGCGAGATAAAGGAAACCTTGATTTGACCATCACCTCTTGGGTTGTTCATGTGTCATGGATTCCAGAATAAATGGCAGCTGTGTCATGCATGCTTTTGCTGTATGGATTAGGTTGTTCTTTCAAATCCTTCCTCTGCTGAGATCATGGAAACTTTAATATGGGTATAGTTAGGGAAGACTGTCAGAAAGCTGCCAGTGGGCAAATAATTTCATTAAGTTGAGTTGCAGAAATTTACGTCGCGAAAAGAGGTAGATGAAGAGTGTTCTCTTGTGGAAGGCTATGAATTGCTTCTTAGATTGAGTGGTCACTCAGACCAGAAAATATTGTTCTTTCTTTATTAGTAGGGTATATTTCTGAATCATGAAAGCTAAATAATCACTGTAATGCTTTTGCGAAGATGGAAACCGTGATGAATTGATGAATGTAGTAATGGATGCATATGTCTCAATTGCCTGATGAGGAGCTACATAATCATCAGAATACATTCTCTGGAAGTCCTGAAAAAGGGAGGAATGTCAAATGTGTTTTCTTTTTACCAACGGAATAAGAATGAATTACTAAAAGGGTTTCTTGTAGAAGTTCCTCCGATAAGGGAGGAAAATTTATTGACAATTGGAATCACAAATGATGTGTTGATATATCTGTAATTTCTCATTGCATTCTTGATTAACACGAAAAAGGGGAGCCTGGTGCACAAAGTTTCCCCTATGCATGGGTCCATGGAAGGGCCATCTCGATCAACATACTGATTAGAAATTCTTGAGCTTGAACTCGCAAAATCTAAACCCGGTTGATATGTGCAGTGTGCTTGTGTACTGAACCAAAAAAAAAAGTTCAGTGGGCTAGTGGAAGTCATAATAACAACCTTTTTCCATATGTTCATTGAGAAAGATCAAAGTGACGAAGAGAATAATACTTCTTCACCTTTCTGTGGAGTGTCTTAAAATGTCTCTTCTACTTTGAGCTGACAATGCAAAAGGTCGTATGCAGCTAGCTGACGATGCCTGATTGATACTTGATTTTTTTACTCAAGGGACTTGTAACTCAAGAAAATGTGCAATGTGCTGTGCATTGAGCATCTAAATGGATCTTAAGTTCTGTTATTTGAAGAAATGATATCCATTTGTTGTGTTATTTGAAGCTTGAAGCAACATCAATCTGTACTGCCAACCCCTTGGCTTGAACAACATAGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGCGTAATTGACAAAAGAGTTTAATGCAATCCTGGGTGGGTCACTATCTGTTCGGTGATACTTTAAGCAGATGGATCTTCTTGACCTGGTATATTGTATATTGTGTGTAGAATAGATTTTAAGAGTTGTCTAACAGCAGTCCATCCATGGTGCCACTGATTCCAGTTTCCTTTTTGATCATTGCATCAGATGTGAAGCATACTCACGAGGAAAATTAAGTATTCATATTCTTGGATATTTTGAAGTCAGTCAGAGGTAGTCTTGTCCAATATAATACATCAAGTGTGAAACATGGCATGGAAGCATAAATTAGCATGCATGCCAGCAGAATTGAGCTATCATATTCTTGGATATTGTGAAGTCAGTTAGAGTGGGGGGTAATCTTTGACCAATATTGAGGGTATGATGGCGTTGGGATTCAATTCTAACTTGGTAAAGCATACATGAGTTCTGCATCTGCCCTCTTGAGTGTAGCATAGTCCATCAGATTGTTATGAGATCCACAGATAAAATGATATGGTTTGGGGTTTATAACCTTTTTTGTCGGTATAGTAGGTATATTGATGTAAAAATAGCATAAAAAAGGGTTTGGGGGTATATCACTATCTTTTTGCATTACCTCATTTACACAGTTCTGGAATAGGCATGAACTGCTTGCGTGATGTAAGCTTTAGGTTTGTCATTTTGTTAATGTCTTGTGTTTAAAGCAGCGGCTCAATGGGTAGAGCACTTGATCTTCTCTTATCAATATAACAGTTTTATGCGTGATACAGTTTTATGATTTACTTCTTGCTTCAGGAGATCAAAGCTTAAAAATGGTATCTGACATTGGATGATGCTCATCAAATGCATTGATTGCTGTTCCAATACAATGCCTTTTGATTTTAAATGATGATGATTGTAGTAGTGATAGCAGAGTTGTTAAGGCATAACGACAGTAGTAATACCAATAGCCATTGCACTTTAGACTAGTAGTGCAAAGCATATTGGCGGCGTAACAACTTTGGTGGAGGCTAATTGTGAATCCTGTTGTTGTTTTGATTGAGATGGTTAATCATAGTACATTCTTTTTCTGTAAGGATTTTCTGGAGTTGTTGAGTAGAGAGGAGGGGCAGATTGTCTGGTTGGGTCTTGTTACGTTTCTTGTATCCCTGTGTACCTTCTTGGTCCTGTTTCAATGATATTTTACCTTATAAATATGAGAGAGGGTGTAGGTTCAAATAGTTTTAATTCATTTTATTGAGATGTAACTGGATGGTTACTTGGAATTTGTGTTTATATTTGTCCTGGATATGAAGTTGTATGAGCTGTGAGCTTGTAATACGGAAATCCATCCCCTTTTTGTTGGATGAAGTTGCTACAGACAGTCATGCACTCAGTGGTCTCTTATCTCTGTTTGTGGCATACTTTGGGATGAGAAGTCAGATGTATCTACAAAGTTTGCTCTTCCCTTTATACCAGGCTTCATTCAAGTCTTACATGTCAGAAGGATAAATGATCATGAAACTTGTCAAATAAAAAGGATGAATGGTCATGAAAGTAATTTTGTTAGTTGACTAGGTCCTGTGAGTCTCTAAGTTAGGCTCTGTTCATGAATAGATGTTGGATTGCTTCTGCAGAACGTTGTCAAAACTTACATGTCATTGAGCTAAAACCGAGTAAAGTATCTGTGTATTTACTCCACCTGTGCCAATTTATTTGACATGTTTTGCTATATCAATGATTAGTTTGACCCTTTTCTGAAACTACACTCTTGATTAATTATTTTTGATTAAAATGTAGATAGTACAAAGATATACAAAAAGATGCATAAGTTGCAATTTTTCTTATTTCAAAATGGTGAAAAGGCAGAACATGTCAAGCATTTGAAGATGGGAGGATTTTTTTTCAACTCCAATTTAGGAGTTAATCTTTGGATTGAGTGTTCCCTAAGGATTTTGGTATTAGTACTGCGTTTTGGATCATTGTGCTGCAAATGCAAGGTGCTGATTGCTTCTATTGTTGACAGAGCAAATTTGAATTCCAGTTGAGACTGCAAGAGTTCATAGAGTTGGTAAGATCTGAAAACATG-ATGCGGGCCATTACATATGCTCGGAAATATCTTTCACCTTGGGGTT</genome_strand>
        <mrna_strand>CTTGATTTCTTCCATTAATGGAGATGGAAACGGTTCCCAACGGCAGTTCGCCGTCATCCACCACCACCACTACCAGCGCTGCCGTCACTACAAACGCCGCATCCGCAGCGGCGGTGGCTGCTGCCATCTCACCTAACGCACCTTCGTCAAAACTGAACCAGCTGTCCGAATCGCTCAAATTGGAGCACCAGTTCCTTCGTGTTCCCTTTGAGCATTACAAGAAGGCGATCCGCGCTAATCATCGTATTGTTGAGAAGGAACTCTCCGCTGTTATTAATGGAGTTTCAGATGCTGCTGAATCTGAAATGTCCCGTGATGATGCTGTACATCACCTTAATTCACTTGTATCCAGATTGCAAGGCCTCAAAAGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAAGAGGGGAGTCGAACAGAGAACCTGCAAGCGCAAAGATGCAGAGCACGGCTAGATCATCTAGAATCTGCTGATCCAGAAAATTTATCAGACTGGCATAACACCCGTTTGAAGTGGATACTGGTGGATTACATGCTGCGGATGTCATATTATAACACTGCTGTAAAGCTTGCTGAAAGCAGCAATATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTGTTGACGTTGATGTCTTTCATGAAGCAAAAAAGGTCATTGATGCTCTCCAAAACAAGGAGGTAACTCCTGCTTTAGCCTGGTGTGCTGATAACAAATCCAGGCTAAAGAAATCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAATTTGAATTCCAGTTGAGACTGCAAGAGTTCATAGAGTTGGTAAAATCTGAAAACATGAATGCGGGCCATTACATATGCTCCGAAATATCTTTCACCTTGGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698173" ref_strand="+" ref_description="SGN-E698173 [FA05CA01]">
      <seq>cttgatttcttccattaatggagatggaaacggttcccaacggcagttcgccgtcatccaccaccaccactaccagcgctgccgtcactacaaacgccgcatccgcagcggcggtggctgctgccatctcacctaacgcaccttcgtcaaaactgaaccagctgtccgaatcgctcaaattggagcaccagttccttcgtgttccctttgagcattacaagaaggcgatccgcgctaatcatcgtattgttgagaaggaactctccgctgttattaatggagtttcagatgctgctgaatctgaaatgtcccgtgatgatgctgtacatcaccttaattcacttgtatccagattgcaaggcctcaaaagaaagtcggaagaggggagtcgaacagagaacctgcaagcgcaaagatgcagagcacggctagatcatctagaatctgctgatccagaaaatttatcagactggcataacacccgtttgaagcggatactggtggattacatgctgcggatgtcatattataacactgctgtaaagcttgctgaaagcagcaatatccaggatcttgttgacgttgatgtctttcatgaagcaaaaaaggtcattgatgctctccaaaacaaggaggtaactcctgctttagcctggtgtgctgataacaaatccaggctaaagaaatcaaagagcaaatttgaattccagttgagactgcaagagttcatagagttggtaagatctgaaaacatgatgcgggccattacatatgctcggaaatatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="1988" stop="10830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2288" g_stop="2661" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2662" i_stop="3334" i_length="673">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.543" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3335" g_stop="3529" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="569" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3530" i_stop="6232" i_length="2703">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6233" g_stop="6355" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="692" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6356" i_stop="10433" i_length="4078">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10434" g_stop="10530" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="789" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E698173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2288" e_stop="2661"/>
          <exon e_start="3335" e_stop="3529"/>
          <exon e_start="6233" e_stop="6355"/>
          <exon e_start="10434" e_stop="10530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTTCTTCCATTAATGGAGATGGAAACGGTTCCCAACGGCAGTTCGCCGTCATCCACCACCACCACTACCAGCGCTGCCGTCACTACAAACGCCGCATCCGCAGCGGCGGTGGCTGCTGCCATCTCACCTAACGCACCTTCGTCAAAACTGAACCAGCTGTCCGAATCGCTCAAATTGGAGCACCAGTTCCTTCGTGTTCCCTTTGAGCATTACAAGAAGGCGATCCGCGCTAATCATCGTATTGTTGAGAAGGAACTCTCCGCTGTTATTAATGGAGTTTCAGATGCTGCTGAATCTGAAATGTCCCGTGATGATGCTGTACATCACCTTAATTCACTTGTATCCAGATTGCAAGGCCTCAAAAGAAAGGTACTTAGAGTAGATCAATTACGATATTCTGTTTGTTTACTGTGTAAGTTTTGATTATGGAAGCTAGACTTCTATAATTAGGTGTGGTATTCTGTTCAGTTACTGTGTAGGATTGAAAGGTATCGAAATTTCCCCTATCCATTGTGTATATATCATATTCAATTAGTGAATAATGAAGGAAGTACCCAAAAATGTGTCTGTAACTGTTTATCACACTTTGACTGTATAAGATTGGATATTGGATGACGGAATCAAAACTTTCCTCTATATATTTTGTGTGCGTGTGTAAGAGAGAGAGAGCATGAAGTGATAAATCTTGTAAAGTTGATTACATTCCAACATGTAGCTTTGAAATTCTTCAGATGTGATTTTTGACCAGTTCAAATTAGGTAAAGGTGGGTTTATATTGTGAGAACAATCATTTTATTGTATAAGATTGGATAAATTAAACGAAGCTTCTATAGGTGTGTATGTGTGTGTTTGATTTATATGTTCTTTGTTGAATTTTGGTTCCTAAAATGTATCCCACTTACTCATTTAGTTAGTCGGTTGGTGACTAATATGTTTGAAAAGCTAAAACAACCCAACACGAAGCTTTTTGAAAGCTTCAGTAATCCTTTTAATCAGTTAAAAATGATGTATCATAATGGTTTTGTATTGTGAGAACAATTAGTCGGAAGAGGGGAGTCGAACAGAGAACCTGCAAGCGCAAAGATGCAGAGCACGGCTAGATCATCTAGAATCTGCTGATCCAGAAAATTTATCAGACTGGCATAACACCCGTTTGAAGCGGATACTGGTGGATTACATGCTGCGGATGTCATATTATAACACTGCTGTAAAGCTTGCTGAAAGCAGCAATATCCAGGTGGGTTTTCTTTGTTCGTTTACCGTTTATTATGTGGTATTATTTATCATGGTTAAAGGGTCATGTTGTTCCAGTTTTTTGAGTCACACAAGCTCCCCTTGTTTGACAAGTTTCTTGGATCTAGCATATAACTATACTTAAGACGTCGGTTGTTTAATGTTTGGTGTACGTCTTAGTATATGGCTGATTTTGGTCTTTTGATTTATGAATTGTTTCCCTGATTAAAAAAAACAACAACTATATTTCGTTTTTTTATCTTAACTTTCAATGGTTGTTTGTTGTTTAGGAGGTACAATTTAGAAGTGTGTTTGCCAACCATCAAGGGAATAGGACTGGTAAAGAAATAGAACTATATTGTATTACTTTTCTTAGATGGAGGATTATCATTTATGTTTGGATGTTTGGTGGGATTAGGAGGAAGTGAATAGATATGTAAGTTCCTCTTGATCTATTTTTGAGAAATTAAATCCTCTTTAAATCTTTTCTGGAGGGGTATCAAACTTCACATTTACTTCCTTATCGAACAGGAGACCAATGTGTATTGCCTCTTCTTCATCTTTCTCCTTTTCACATCTACCAAACATAATTTTGAAAACAAGTTCATTCTTCATGAATGTATACGAATGTTTCTTCATTGATCTCTGTACATTTTACGTTTAGTTTCTACTAGTTCTCTCTGTGAGCAGTCCCTTCGGGTTACAATAATAAAATTCTTAGTACTTTTGAGAAGGGAAGAATTCCTTCTGGCTTTCTCCGGTTTTCATAAGTAAATGTAATTTATTGTACTTTTCTTAGTTTCTTGTTTTTCTGTGGTTTTGTATCGTCTTTTCCCCTTATTGGGTGACGATTGATGCGATAGGTGGATTTGGGAAGGGCAATACTAGCTCTTGTTTTTATTTAACTGACTAATGTCGGGCAGAAGGACTACAAGTGCCTACTTACCTATAAATTATAATAATGATACAAGAACTACGCCTCAATCCCAAGCGAGTTAGGATCAGCTATTTGAATGTTCACTGTCCGTATAGCTCCATTTAAGTCCATCTCAGTCCAAAGTAATTGGAGTAATAATTTAACGAAAGAAAAGAGGAGAAAGACAAAAAAAATTGAAGGCACAACAATGCAACTTTGCATTGGAAGGATTGATATTTTGCTTCATCTGTTATGGAACAACCGAAGAAGAAGGAAAAGCTTTTTTATCTTTCCTTCTCCGAGAACCGTAGCGTGTTTGATATTGAACAAAAGTTGACATAGGTTATTTTGCACATGATGTTCCATTGATTCATTTTTTCCTTCTCTTTGTTGTCAATATGCACTACTTTTCTCAGGTTAGGATGCTGCTTCTGCTCCCAACCTTAAGTAATTATCTTGAATATGTTTGTCTTTTTGGGTCGGATACATTACCGCTGACAAGTGTTTCTGGATGTAGTTGCCTTGTTCTTCCAAAGTATTCCAGCTCTGTGGAAGATTTAAGGCATTAAAATAGATTCAGACCTAGCTTATCAGGATTCAGGAAAAAGGATTTCCATGTATATTTCATTTTTCTAAGTTGCCCATTATATATGTTAGATAGTTTTTTTGAAAAATGTCCATTTTGTGGTAATATATCTGTTATCTTTCTACATATCATGTACGAGTCTACATTTATAAGTATAAGGAAAACCTTTTTAAAAAAATAAACATAGAAATAATGAGGCTTTCTTGCCAAGATCGAAACTTATAGGGAAATTGGGACGGCAAGCTGGAATATGCTTTTTGCAAGTCATGAGAAAACAGAGTTGATCTGGGGACATTTCATCCATTGGGGAGAGGTCACAACTAGGAAGGTCTAAAGAAGGAATTCAACGATAGGGTGGTTGAGTGGTTTTGCTCTCTGGTTTTTCTGCCTATAGAAAGTACATTATAGCAATGGTGCCAACACCTTTTTCAAATGGTTCATAGCACTCACAAAATTTGTTCGTGGTGCCAAACTATAATCTGTTTGCCTGTAGGGTGCACAAGGATATTAAGTGAGCATGATTGGCATGCATAATCCATTTAGTCCTGCTTTTTCTTTACCAAAAAGAATCCCGTAGTCCTGCTTTGTTGTGTTTACTGTGACAATTTCTACCACTCAATCATCATAAATATAAAAATGTATTTTCTAAACTAGAAGCCACTATTTTTGAACTTTTTACTCAAGAATTGGTAATTCGTGCTTCCATAATATTTTTAGAGTATTTTGGGTTATTGTCGTATGGTTTCAACCAATATTCCATTTTGGTATTTAAATGAATTTCTGATGAGAATCAACTATCATTTTGATTGCAATTTCACCTCTCTTTGTTGTACACCTTGTATACGATTACTCCCATCACTTCAACAAACTGTTAATTTCATGTTTTCATCAGTGAGGCAATATTTCCTATAGTTGAGAACTTTGATGTGACCTCATTATAACATTTAAGATAGACATTTAAAACCTAATCCATACAGGATCTGGAGGCTCAAGCCGTGTAGTTAAATTTTAATACAACTTTTAGGTGATGCTGGTTCTTGCACTTGGTTTAATCTATCTTTATGATGTGTTTACTTGAATAATGCAGTAACTATGTCGGCTACCCAAATTGATGCTTCTTTTTGTAGAGTCGATTGTGCTTGTGAATTTCTTTAGCTGCAAAATTTTTTAGCCGTTGTGATTAAGTATGGTCTTTTCTATTCTAGGATCTTGTTGACGTTGATGTCTTTCATGAAGCAAAAAAGGTCATTGATGCTCTCCAAAACAAGGAGGTAACTCCTGCTTTAGCCTGGTGTGCTGATAACAAATCCAGGCTAAAGAAATCAAAGGTACGATTATTTCTGTTTCTTTGAGCTTGTCTTTAATATTCTTATTACTGCTTTAACAATTCTATGTTTGTATTGTAATCAGCGACAAAAGTGATATTTTCTTCATGTGGCTAACCACTAATTCTGGTTTCAAGAAGATGTTATTCAATTCTGTAGCTCAAATGTGAGAAAATATGAAAAAGTCTCAGATCAGCCTCTTATCATGTTTACCGGGTTGAGTGGATCTCCTTCTGATTAATTTGATGGACATAAAGTTCAATTAGTGTATGTTAGACACAGATAGCATTCGATGACTGCAGACATTTTGGGCTGCCAATGTGCAGAACATAGATAAAAGTTAGTGAAAGGGTGAAAACCTATGTGAAGCCTGATGGTTTTTCAATTGAGAAAGGCATCCCATTGTGTTTGATGGGTTTTTAGCGTTTGTGAAGCTTCAGATATCCCTTTTTGAAACCAATAGAGTGAACAGAAGTTCTGCTTGGGTCTACTTGTTTCACTTCATGGTTTTTGAATGAAGGTAATCTCAAGCACACCTTCAGCAAAAAAAAGGTATCTCGAGCATCATATGCTTAAAGTGGATTATGAGTTTTGAACTTTTGTGCGTTGCTTTTCATGGGTTAAAGAAACTTCTCTGGAAATCCCACTGTTAATAAAAACCTTATCAAGAGGAAATTTCTCTGGACAAATCAGTCTAGCTTATGCCGTAGGAAGATTATAAGATGGACGCACATCAATTGAGATTTTCGTTCTTCACCTTTCTCATCTGCAATGGATTTCAGAGATTAATTGTACTATCCTTGCTTTGCTGTAAAGATTGGGATGTCCGTTCTGGACTGCATCTTCTGCGAGATAAAGGAAACCTTGATTTGACCATCACCTCTTGGGTTGTTCATGTGTCATGGATTCCAGAATAAATGGCAGCTGTGTCATGCATGCTTTTGCTGTATGGATTAGGTTGTTCTTTCAAATCCTTCCTCTGCTGAGATCATGGAAACTTTAATATGGGTATAGTTAGGGAAGACTGTCAGAAAGCTGCCAGTGGGCAAATAATTTCATTAAGTTGAGTTGCAGAAATTTACGTCGCGAAAAGAGGTAGATGAAGAGTGTTCTCTTGTGGAAGGCTATGAATTGCTTCTTAGATTGAGTGGTCACTCAGACCAGAAAATATTGTTCTTTCTTTATTAGTAGGGTATATTTCTGAATCATGAAAGCTAAATAATCACTGTAATGCTTTTGCGAAGATGGAAACCGTGATGAATTGATGAATGTAGTAATGGATGCATATGTCTCAATTGCCTGATGAGGAGCTACATAATCATCAGAATACATTCTCTGGAAGTCCTGAAAAAGGGAGGAATGTCAAATGTGTTTTCTTTTTACCAACGGAATAAGAATGAATTACTAAAAGGGTTTCTTGTAGAAGTTCCTCCGATAAGGGAGGAAAATTTATTGACAATTGGAATCACAAATGATGTGTTGATATATCTGTAATTTCTCATTGCATTCTTGATTAACACGAAAAAGGGGAGCCTGGTGCACAAAGTTTCCCCTATGCATGGGTCCATGGAAGGGCCATCTCGATCAACATACTGATTAGAAATTCTTGAGCTTGAACTCGCAAAATCTAAACCCGGTTGATATGTGCAGTGTGCTTGTGTACTGAACCAAAAAAAAAAGTTCAGTGGGCTAGTGGAAGTCATAATAACAACCTTTTTCCATATGTTCATTGAGAAAGATCAAAGTGACGAAGAGAATAATACTTCTTCACCTTTCTGTGGAGTGTCTTAAAATGTCTCTTCTACTTTGAGCTGACAATGCAAAAGGTCGTATGCAGCTAGCTGACGATGCCTGATTGATACTTGATTTTTTTACTCAAGGGACTTGTAACTCAAGAAAATGTGCAATGTGCTGTGCATTGAGCATCTAAATGGATCTTAAGTTCTGTTATTTGAAGAAATGATATCCATTTGTTGTGTTATTTGAAGCTTGAAGCAACATCAATCTGTACTGCCAACCCCTTGGCTTGAACAACATAGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGCGTAATTGACAAAAGAGTTTAATGCAATCCTGGGTGGGTCACTATCTGTTCGGTGATACTTTAAGCAGATGGATCTTCTTGACCTGGTATATTGTATATTGTGTGTAGAATAGATTTTAAGAGTTGTCTAACAGCAGTCCATCCATGGTGCCACTGATTCCAGTTTCCTTTTTGATCATTGCATCAGATGTGAAGCATACTCACGAGGAAAATTAAGTATTCATATTCTTGGATATTTTGAAGTCAGTCAGAGGTAGTCTTGTCCAATATAATACATCAAGTGTGAAACATGGCATGGAAGCATAAATTAGCATGCATGCCAGCAGAATTGAGCTATCATATTCTTGGATATTGTGAAGTCAGTTAGAGTGGGGGGTAATCTTTGACCAATATTGAGGGTATGATGGCGTTGGGATTCAATTCTAACTTGGTAAAGCATACATGAGTTCTGCATCTGCCCTCTTGAGTGTAGCATAGTCCATCAGATTGTTATGAGATCCACAGATAAAATGATATGGTTTGGGGTTTATAACCTTTTTTGTCGGTATAGTAGGTATATTGATGTAAAAATAGCATAAAAAAGGGTTTGGGGGTATATCACTATCTTTTTGCATTACCTCATTTACACAGTTCTGGAATAGGCATGAACTGCTTGCGTGATGTAAGCTTTAGGTTTGTCATTTTGTTAATGTCTTGTGTTTAAAGCAGCGGCTCAATGGGTAGAGCACTTGATCTTCTCTTATCAATATAACAGTTTTATGCGTGATACAGTTTTATGATTTACTTCTTGCTTCAGGAGATCAAAGCTTAAAAATGGTATCTGACATTGGATGATGCTCATCAAATGCATTGATTGCTGTTCCAATACAATGCCTTTTGATTTTAAATGATGATGATTGTAGTAGTGATAGCAGAGTTGTTAAGGCATAACGACAGTAGTAATACCAATAGCCATTGCACTTTAGACTAGTAGTGCAAAGCATATTGGCGGCGTAACAACTTTGGTGGAGGCTAATTGTGAATCCTGTTGTTGTTTTGATTGAGATGGTTAATCATAGTACATTCTTTTTCTGTAAGGATTTTCTGGAGTTGTTGAGTAGAGAGGAGGGGCAGATTGTCTGGTTGGGTCTTGTTACGTTTCTTGTATCCCTGTGTACCTTCTTGGTCCTGTTTCAATGATATTTTACCTTATAAATATGAGAGAGGGTGTAGGTTCAAATAGTTTTAATTCATTTTATTGAGATGTAACTGGATGGTTACTTGGAATTTGTGTTTATATTTGTCCTGGATATGAAGTTGTATGAGCTGTGAGCTTGTAATACGGAAATCCATCCCCTTTTTGTTGGATGAAGTTGCTACAGACAGTCATGCACTCAGTGGTCTCTTATCTCTGTTTGTGGCATACTTTGGGATGAGAAGTCAGATGTATCTACAAAGTTTGCTCTTCCCTTTATACCAGGCTTCATTCAAGTCTTACATGTCAGAAGGATAAATGATCATGAAACTTGTCAAATAAAAAGGATGAATGGTCATGAAAGTAATTTTGTTAGTTGACTAGGTCCTGTGAGTCTCTAAGTTAGGCTCTGTTCATGAATAGATGTTGGATTGCTTCTGCAGAACGTTGTCAAAACTTACATGTCATTGAGCTAAAACCGAGTAAAGTATCTGTGTATTTACTCCACCTGTGCCAATTTATTTGACATGTTTTGCTATATCAATGATTAGTTTGACCCTTTTCTGAAACTACACTCTTGATTAATTATTTTTGATTAAAATGTAGATAGTACAAAGATATACAAAAAGATGCATAAGTTGCAATTTTTCTTATTTCAAAATGGTGAAAAGGCAGAACATGTCAAGCATTTGAAGATGGGAGGATTTTTTTTCAACTCCAATTTAGGAGTTAATCTTTGGATTGAGTGTTCCCTAAGGATTTTGGTATTAGTACTGCGTTTTGGATCATTGTGCTGCAAATGCAAGGTGCTGATTGCTTCTATTGTTGACAGAGCAAATTTGAATTCCAGTTGAGACTGCAAGAGTTCATAGAGTTGGTAAGATCTGAAAACATGATGCGGGCCATTACATATGCTCGGAAATATCTTT</genome_strand>
        <mrna_strand>CTTGATTTCTTCCATTAATGGAGATGGAAACGGTTCCCAACGGCAGTTCGCCGTCATCCACCACCACCACTACCAGCGCTGCCGTCACTACAAACGCCGCATCCGCAGCGGCGGTGGCTGCTGCCATCTCACCTAACGCACCTTCGTCAAAACTGAACCAGCTGTCCGAATCGCTCAAATTGGAGCACCAGTTCCTTCGTGTTCCCTTTGAGCATTACAAGAAGGCGATCCGCGCTAATCATCGTATTGTTGAGAAGGAACTCTCCGCTGTTATTAATGGAGTTTCAGATGCTGCTGAATCTGAAATGTCCCGTGATGATGCTGTACATCACCTTAATTCACTTGTATCCAGATTGCAAGGCCTCAAAAGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAAGAGGGGAGTCGAACAGAGAACCTGCAAGCGCAAAGATGCAGAGCACGGCTAGATCATCTAGAATCTGCTGATCCAGAAAATTTATCAGACTGGCATAACACCCGTTTGAAGCGGATACTGGTGGATTACATGCTGCGGATGTCATATTATAACACTGCTGTAAAGCTTGCTGAAAGCAGCAATATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTGTTGACGTTGATGTCTTTCATGAAGCAAAAAAGGTCATTGATGCTCTCCAAAACAAGGAGGTAACTCCTGCTTTAGCCTGGTGTGCTGATAACAAATCCAGGCTAAAGAAATCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAATTTGAATTCCAGTTGAGACTGCAAGAGTTCATAGAGTTGGTAAGATCTGAAAACATGATGCGGGCCATTACATATGCTCGGAAATATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323408" ref_strand="+" ref_description="SGN-E323408 [cTOC-7-I15]">
      <seq>cttccattaatggagatggaaacggttcccaacggcggttcgccgtcatccaccaccaccactaccagcgctgccgtcactacaaacgccgcatccgcagcggcggtggctgctgccatctcacctaacgcaccttcgtcaaaactgaaccagctgtccgaatcgctcaaattggagcaccagttccttcgtgttccctttgagcattacaagaaggcgatccgcgctaatcatcgtattgttgagaaggaactctccgctgttattaatggagtttcagatgctgctgaatctgaaatgtcccgtgatgatgctgtacatcaccttaattcacttgtatccagattgcaaggcctcaaaagaaagtcggaagaggggagtcgaacagagaacctgcaagcgcaaagatgcagagcacggctagatcatctagaatctgctgatccagaaaatttatcagactggcataacacccgtttgaagcggatactggtggattacatgctgcggatgtcatattataacactgctgtaaagcttgctgaaagcagcaatatccaggatcttggtgacgttgatgtctttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="1996" stop="6560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2296" g_stop="2661" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2662" i_stop="3334" i_length="673">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.543" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3335" g_stop="3529" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="561" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3530" i_stop="6232" i_length="2703">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6233" g_stop="6260" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="589" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E323408" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2296" e_stop="2661"/>
          <exon e_start="3335" e_stop="3529"/>
          <exon e_start="6233" e_stop="6260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCATTAATGGAGATGGAAACGGTTCCCAACGGCAGTTCGCCGTCATCCACCACCACCACTACCAGCGCTGCCGTCACTACAAACGCCGCATCCGCAGCGGCGGTGGCTGCTGCCATCTCACCTAACGCACCTTCGTCAAAACTGAACCAGCTGTCCGAATCGCTCAAATTGGAGCACCAGTTCCTTCGTGTTCCCTTTGAGCATTACAAGAAGGCGATCCGCGCTAATCATCGTATTGTTGAGAAGGAACTCTCCGCTGTTATTAATGGAGTTTCAGATGCTGCTGAATCTGAAATGTCCCGTGATGATGCTGTACATCACCTTAATTCACTTGTATCCAGATTGCAAGGCCTCAAAAGAAAGGTACTTAGAGTAGATCAATTACGATATTCTGTTTGTTTACTGTGTAAGTTTTGATTATGGAAGCTAGACTTCTATAATTAGGTGTGGTATTCTGTTCAGTTACTGTGTAGGATTGAAAGGTATCGAAATTTCCCCTATCCATTGTGTATATATCATATTCAATTAGTGAATAATGAAGGAAGTACCCAAAAATGTGTCTGTAACTGTTTATCACACTTTGACTGTATAAGATTGGATATTGGATGACGGAATCAAAACTTTCCTCTATATATTTTGTGTGCGTGTGTAAGAGAGAGAGAGCATGAAGTGATAAATCTTGTAAAGTTGATTACATTCCAACATGTAGCTTTGAAATTCTTCAGATGTGATTTTTGACCAGTTCAAATTAGGTAAAGGTGGGTTTATATTGTGAGAACAATCATTTTATTGTATAAGATTGGATAAATTAAACGAAGCTTCTATAGGTGTGTATGTGTGTGTTTGATTTATATGTTCTTTGTTGAATTTTGGTTCCTAAAATGTATCCCACTTACTCATTTAGTTAGTCGGTTGGTGACTAATATGTTTGAAAAGCTAAAACAACCCAACACGAAGCTTTTTGAAAGCTTCAGTAATCCTTTTAATCAGTTAAAAATGATGTATCATAATGGTTTTGTATTGTGAGAACAATTAGTCGGAAGAGGGGAGTCGAACAGAGAACCTGCAAGCGCAAAGATGCAGAGCACGGCTAGATCATCTAGAATCTGCTGATCCAGAAAATTTATCAGACTGGCATAACACCCGTTTGAAGCGGATACTGGTGGATTACATGCTGCGGATGTCATATTATAACACTGCTGTAAAGCTTGCTGAAAGCAGCAATATCCAGGTGGGTTTTCTTTGTTCGTTTACCGTTTATTATGTGGTATTATTTATCATGGTTAAAGGGTCATGTTGTTCCAGTTTTTTGAGTCACACAAGCTCCCCTTGTTTGACAAGTTTCTTGGATCTAGCATATAACTATACTTAAGACGTCGGTTGTTTAATGTTTGGTGTACGTCTTAGTATATGGCTGATTTTGGTCTTTTGATTTATGAATTGTTTCCCTGATTAAAAAAAACAACAACTATATTTCGTTTTTTTATCTTAACTTTCAATGGTTGTTTGTTGTTTAGGAGGTACAATTTAGAAGTGTGTTTGCCAACCATCAAGGGAATAGGACTGGTAAAGAAATAGAACTATATTGTATTACTTTTCTTAGATGGAGGATTATCATTTATGTTTGGATGTTTGGTGGGATTAGGAGGAAGTGAATAGATATGTAAGTTCCTCTTGATCTATTTTTGAGAAATTAAATCCTCTTTAAATCTTTTCTGGAGGGGTATCAAACTTCACATTTACTTCCTTATCGAACAGGAGACCAATGTGTATTGCCTCTTCTTCATCTTTCTCCTTTTCACATCTACCAAACATAATTTTGAAAACAAGTTCATTCTTCATGAATGTATACGAATGTTTCTTCATTGATCTCTGTACATTTTACGTTTAGTTTCTACTAGTTCTCTCTGTGAGCAGTCCCTTCGGGTTACAATAATAAAATTCTTAGTACTTTTGAGAAGGGAAGAATTCCTTCTGGCTTTCTCCGGTTTTCATAAGTAAATGTAATTTATTGTACTTTTCTTAGTTTCTTGTTTTTCTGTGGTTTTGTATCGTCTTTTCCCCTTATTGGGTGACGATTGATGCGATAGGTGGATTTGGGAAGGGCAATACTAGCTCTTGTTTTTATTTAACTGACTAATGTCGGGCAGAAGGACTACAAGTGCCTACTTACCTATAAATTATAATAATGATACAAGAACTACGCCTCAATCCCAAGCGAGTTAGGATCAGCTATTTGAATGTTCACTGTCCGTATAGCTCCATTTAAGTCCATCTCAGTCCAAAGTAATTGGAGTAATAATTTAACGAAAGAAAAGAGGAGAAAGACAAAAAAAATTGAAGGCACAACAATGCAACTTTGCATTGGAAGGATTGATATTTTGCTTCATCTGTTATGGAACAACCGAAGAAGAAGGAAAAGCTTTTTTATCTTTCCTTCTCCGAGAACCGTAGCGTGTTTGATATTGAACAAAAGTTGACATAGGTTATTTTGCACATGATGTTCCATTGATTCATTTTTTCCTTCTCTTTGTTGTCAATATGCACTACTTTTCTCAGGTTAGGATGCTGCTTCTGCTCCCAACCTTAAGTAATTATCTTGAATATGTTTGTCTTTTTGGGTCGGATACATTACCGCTGACAAGTGTTTCTGGATGTAGTTGCCTTGTTCTTCCAAAGTATTCCAGCTCTGTGGAAGATTTAAGGCATTAAAATAGATTCAGACCTAGCTTATCAGGATTCAGGAAAAAGGATTTCCATGTATATTTCATTTTTCTAAGTTGCCCATTATATATGTTAGATAGTTTTTTTGAAAAATGTCCATTTTGTGGTAATATATCTGTTATCTTTCTACATATCATGTACGAGTCTACATTTATAAGTATAAGGAAAACCTTTTTAAAAAAATAAACATAGAAATAATGAGGCTTTCTTGCCAAGATCGAAACTTATAGGGAAATTGGGACGGCAAGCTGGAATATGCTTTTTGCAAGTCATGAGAAAACAGAGTTGATCTGGGGACATTTCATCCATTGGGGAGAGGTCACAACTAGGAAGGTCTAAAGAAGGAATTCAACGATAGGGTGGTTGAGTGGTTTTGCTCTCTGGTTTTTCTGCCTATAGAAAGTACATTATAGCAATGGTGCCAACACCTTTTTCAAATGGTTCATAGCACTCACAAAATTTGTTCGTGGTGCCAAACTATAATCTGTTTGCCTGTAGGGTGCACAAGGATATTAAGTGAGCATGATTGGCATGCATAATCCATTTAGTCCTGCTTTTTCTTTACCAAAAAGAATCCCGTAGTCCTGCTTTGTTGTGTTTACTGTGACAATTTCTACCACTCAATCATCATAAATATAAAAATGTATTTTCTAAACTAGAAGCCACTATTTTTGAACTTTTTACTCAAGAATTGGTAATTCGTGCTTCCATAATATTTTTAGAGTATTTTGGGTTATTGTCGTATGGTTTCAACCAATATTCCATTTTGGTATTTAAATGAATTTCTGATGAGAATCAACTATCATTTTGATTGCAATTTCACCTCTCTTTGTTGTACACCTTGTATACGATTACTCCCATCACTTCAACAAACTGTTAATTTCATGTTTTCATCAGTGAGGCAATATTTCCTATAGTTGAGAACTTTGATGTGACCTCATTATAACATTTAAGATAGACATTTAAAACCTAATCCATACAGGATCTGGAGGCTCAAGCCGTGTAGTTAAATTTTAATACAACTTTTAGGTGATGCTGGTTCTTGCACTTGGTTTAATCTATCTTTATGATGTGTTTACTTGAATAATGCAGTAACTATGTCGGCTACCCAAATTGATGCTTCTTTTTGTAGAGTCGATTGTGCTTGTGAATTTCTTTAGCTGCAAAATTTTTTAGCCGTTGTGATTAAGTATGGTCTTTTCTATTCTAGGATCTTGTTGACGTTGATGTCTTTCATG</genome_strand>
        <mrna_strand>CTTCCATTAATGGAGATGGAAACGGTTCCCAACGGCGGTTCGCCGTCATCCACCACCACCACTACCAGCGCTGCCGTCACTACAAACGCCGCATCCGCAGCGGCGGTGGCTGCTGCCATCTCACCTAACGCACCTTCGTCAAAACTGAACCAGCTGTCCGAATCGCTCAAATTGGAGCACCAGTTCCTTCGTGTTCCCTTTGAGCATTACAAGAAGGCGATCCGCGCTAATCATCGTATTGTTGAGAAGGAACTCTCCGCTGTTATTAATGGAGTTTCAGATGCTGCTGAATCTGAAATGTCCCGTGATGATGCTGTACATCACCTTAATTCACTTGTATCCAGATTGCAAGGCCTCAAAAGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAAGAGGGGAGTCGAACAGAGAACCTGCAAGCGCAAAGATGCAGAGCACGGCTAGATCATCTAGAATCTGCTGATCCAGAAAATTTATCAGACTGGCATAACACCCGTTTGAAGCGGATACTGGTGGATTACATGCTGCGGATGTCATATTATAACACTGCTGTAAAGCTTGCTGAAAGCAGCAATATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTGGTGACGTTGATGTCTTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703438" ref_strand="+" ref_description="SGN-E703438 [FA21CA06]">
      <seq>ggaaacggttcccaacggcagttcgccgtcatccaccaccaccactaccagcgctgccgtcactacaaacgccgcatccgcagcggcggtggctgctgccatctcacctaacgcaccttcgtcaaaactgaaccagctgtccgaatcgctcaaattggagcaccagttccttcgtgttccctttgagcattacaagaaggcgatccgcgctaatcatcgtattgttgagaaggaactctccgctgttattaatggagtttcagatgctgctgaatctgaaatgtcccgtgatgatgctgtacatcaccttaattcacttgtatccagattgcaaggcctcaaaagaaagtcggaagaggggagtcgaacagagaacctgcaagcgcaaagatgcagagcacggctagatcatctagaatctgctgatccagaaaatttatcagactggcataacacccgtttgaagcggatactggtggattacatgctgcggatgtcatattataacactgctgtaaagcttgctgaaagcagcaatatccaggatcttgttgacgttgatgtctttcatgaagcaaaaaaggtcattgatgctctccaaaacaaggaggtaactcctgctttagcctggtgtgctgataacaaatccaggctaaagaaatcaaagagcaaatttgaattccagttgagactgcaagagttcatagagttggtaagatctgaaaacatgatgcgggccattacatatgctcggaaatatctttcaccttggggttctacccacatgaaagagttgcagcggggccttggcgacacttgcttttcagagtaatactgaatgtaacaacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="2013" stop="10916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2313" g_stop="2661" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2662" i_stop="3334" i_length="673">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.543" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3335" g_stop="3529" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="544" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3530" i_stop="6232" i_length="2703">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6233" g_stop="6355" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="667" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6356" i_stop="10433" i_length="4078">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10434" g_stop="10616" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="852" r_length="185" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E703438" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2313" e_stop="2661"/>
          <exon e_start="3335" e_stop="3529"/>
          <exon e_start="6233" e_stop="6355"/>
          <exon e_start="10434" e_stop="10616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACGGTTCCCAACGGCAGTTCGCCGTCATCCACCACCACCACTACCAGCGCTGCCGTCACTACAAACGCCGCATCCGCAGCGGCGGTGGCTGCTGCCATCTCACCTAACGCACCTTCGTCAAAACTGAACCAGCTGTCCGAATCGCTCAAATTGGAGCACCAGTTCCTTCGTGTTCCCTTTGAGCATTACAAGAAGGCGATCCGCGCTAATCATCGTATTGTTGAGAAGGAACTCTCCGCTGTTATTAATGGAGTTTCAGATGCTGCTGAATCTGAAATGTCCCGTGATGATGCTGTACATCACCTTAATTCACTTGTATCCAGATTGCAAGGCCTCAAAAGAAAGGTACTTAGAGTAGATCAATTACGATATTCTGTTTGTTTACTGTGTAAGTTTTGATTATGGAAGCTAGACTTCTATAATTAGGTGTGGTATTCTGTTCAGTTACTGTGTAGGATTGAAAGGTATCGAAATTTCCCCTATCCATTGTGTATATATCATATTCAATTAGTGAATAATGAAGGAAGTACCCAAAAATGTGTCTGTAACTGTTTATCACACTTTGACTGTATAAGATTGGATATTGGATGACGGAATCAAAACTTTCCTCTATATATTTTGTGTGCGTGTGTAAGAGAGAGAGAGCATGAAGTGATAAATCTTGTAAAGTTGATTACATTCCAACATGTAGCTTTGAAATTCTTCAGATGTGATTTTTGACCAGTTCAAATTAGGTAAAGGTGGGTTTATATTGTGAGAACAATCATTTTATTGTATAAGATTGGATAAATTAAACGAAGCTTCTATAGGTGTGTATGTGTGTGTTTGATTTATATGTTCTTTGTTGAATTTTGGTTCCTAAAATGTATCCCACTTACTCATTTAGTTAGTCGGTTGGTGACTAATATGTTTGAAAAGCTAAAACAACCCAACACGAAGCTTTTTGAAAGCTTCAGTAATCCTTTTAATCAGTTAAAAATGATGTATCATAATGGTTTTGTATTGTGAGAACAATTAGTCGGAAGAGGGGAGTCGAACAGAGAACCTGCAAGCGCAAAGATGCAGAGCACGGCTAGATCATCTAGAATCTGCTGATCCAGAAAATTTATCAGACTGGCATAACACCCGTTTGAAGCGGATACTGGTGGATTACATGCTGCGGATGTCATATTATAACACTGCTGTAAAGCTTGCTGAAAGCAGCAATATCCAGGTGGGTTTTCTTTGTTCGTTTACCGTTTATTATGTGGTATTATTTATCATGGTTAAAGGGTCATGTTGTTCCAGTTTTTTGAGTCACACAAGCTCCCCTTGTTTGACAAGTTTCTTGGATCTAGCATATAACTATACTTAAGACGTCGGTTGTTTAATGTTTGGTGTACGTCTTAGTATATGGCTGATTTTGGTCTTTTGATTTATGAATTGTTTCCCTGATTAAAAAAAACAACAACTATATTTCGTTTTTTTATCTTAACTTTCAATGGTTGTTTGTTGTTTAGGAGGTACAATTTAGAAGTGTGTTTGCCAACCATCAAGGGAATAGGACTGGTAAAGAAATAGAACTATATTGTATTACTTTTCTTAGATGGAGGATTATCATTTATGTTTGGATGTTTGGTGGGATTAGGAGGAAGTGAATAGATATGTAAGTTCCTCTTGATCTATTTTTGAGAAATTAAATCCTCTTTAAATCTTTTCTGGAGGGGTATCAAACTTCACATTTACTTCCTTATCGAACAGGAGACCAATGTGTATTGCCTCTTCTTCATCTTTCTCCTTTTCACATCTACCAAACATAATTTTGAAAACAAGTTCATTCTTCATGAATGTATACGAATGTTTCTTCATTGATCTCTGTACATTTTACGTTTAGTTTCTACTAGTTCTCTCTGTGAGCAGTCCCTTCGGGTTACAATAATAAAATTCTTAGTACTTTTGAGAAGGGAAGAATTCCTTCTGGCTTTCTCCGGTTTTCATAAGTAAATGTAATTTATTGTACTTTTCTTAGTTTCTTGTTTTTCTGTGGTTTTGTATCGTCTTTTCCCCTTATTGGGTGACGATTGATGCGATAGGTGGATTTGGGAAGGGCAATACTAGCTCTTGTTTTTATTTAACTGACTAATGTCGGGCAGAAGGACTACAAGTGCCTACTTACCTATAAATTATAATAATGATACAAGAACTACGCCTCAATCCCAAGCGAGTTAGGATCAGCTATTTGAATGTTCACTGTCCGTATAGCTCCATTTAAGTCCATCTCAGTCCAAAGTAATTGGAGTAATAATTTAACGAAAGAAAAGAGGAGAAAGACAAAAAAAATTGAAGGCACAACAATGCAACTTTGCATTGGAAGGATTGATATTTTGCTTCATCTGTTATGGAACAACCGAAGAAGAAGGAAAAGCTTTTTTATCTTTCCTTCTCCGAGAACCGTAGCGTGTTTGATATTGAACAAAAGTTGACATAGGTTATTTTGCACATGATGTTCCATTGATTCATTTTTTCCTTCTCTTTGTTGTCAATATGCACTACTTTTCTCAGGTTAGGATGCTGCTTCTGCTCCCAACCTTAAGTAATTATCTTGAATATGTTTGTCTTTTTGGGTCGGATACATTACCGCTGACAAGTGTTTCTGGATGTAGTTGCCTTGTTCTTCCAAAGTATTCCAGCTCTGTGGAAGATTTAAGGCATTAAAATAGATTCAGACCTAGCTTATCAGGATTCAGGAAAAAGGATTTCCATGTATATTTCATTTTTCTAAGTTGCCCATTATATATGTTAGATAGTTTTTTTGAAAAATGTCCATTTTGTGGTAATATATCTGTTATCTTTCTACATATCATGTACGAGTCTACATTTATAAGTATAAGGAAAACCTTTTTAAAAAAATAAACATAGAAATAATGAGGCTTTCTTGCCAAGATCGAAACTTATAGGGAAATTGGGACGGCAAGCTGGAATATGCTTTTTGCAAGTCATGAGAAAACAGAGTTGATCTGGGGACATTTCATCCATTGGGGAGAGGTCACAACTAGGAAGGTCTAAAGAAGGAATTCAACGATAGGGTGGTTGAGTGGTTTTGCTCTCTGGTTTTTCTGCCTATAGAAAGTACATTATAGCAATGGTGCCAACACCTTTTTCAAATGGTTCATAGCACTCACAAAATTTGTTCGTGGTGCCAAACTATAATCTGTTTGCCTGTAGGGTGCACAAGGATATTAAGTGAGCATGATTGGCATGCATAATCCATTTAGTCCTGCTTTTTCTTTACCAAAAAGAATCCCGTAGTCCTGCTTTGTTGTGTTTACTGTGACAATTTCTACCACTCAATCATCATAAATATAAAAATGTATTTTCTAAACTAGAAGCCACTATTTTTGAACTTTTTACTCAAGAATTGGTAATTCGTGCTTCCATAATATTTTTAGAGTATTTTGGGTTATTGTCGTATGGTTTCAACCAATATTCCATTTTGGTATTTAAATGAATTTCTGATGAGAATCAACTATCATTTTGATTGCAATTTCACCTCTCTTTGTTGTACACCTTGTATACGATTACTCCCATCACTTCAACAAACTGTTAATTTCATGTTTTCATCAGTGAGGCAATATTTCCTATAGTTGAGAACTTTGATGTGACCTCATTATAACATTTAAGATAGACATTTAAAACCTAATCCATACAGGATCTGGAGGCTCAAGCCGTGTAGTTAAATTTTAATACAACTTTTAGGTGATGCTGGTTCTTGCACTTGGTTTAATCTATCTTTATGATGTGTTTACTTGAATAATGCAGTAACTATGTCGGCTACCCAAATTGATGCTTCTTTTTGTAGAGTCGATTGTGCTTGTGAATTTCTTTAGCTGCAAAATTTTTTAGCCGTTGTGATTAAGTATGGTCTTTTCTATTCTAGGATCTTGTTGACGTTGATGTCTTTCATGAAGCAAAAAAGGTCATTGATGCTCTCCAAAACAAGGAGGTAACTCCTGCTTTAGCCTGGTGTGCTGATAACAAATCCAGGCTAAAGAAATCAAAGGTACGATTATTTCTGTTTCTTTGAGCTTGTCTTTAATATTCTTATTACTGCTTTAACAATTCTATGTTTGTATTGTAATCAGCGACAAAAGTGATATTTTCTTCATGTGGCTAACCACTAATTCTGGTTTCAAGAAGATGTTATTCAATTCTGTAGCTCAAATGTGAGAAAATATGAAAAAGTCTCAGATCAGCCTCTTATCATGTTTACCGGGTTGAGTGGATCTCCTTCTGATTAATTTGATGGACATAAAGTTCAATTAGTGTATGTTAGACACAGATAGCATTCGATGACTGCAGACATTTTGGGCTGCCAATGTGCAGAACATAGATAAAAGTTAGTGAAAGGGTGAAAACCTATGTGAAGCCTGATGGTTTTTCAATTGAGAAAGGCATCCCATTGTGTTTGATGGGTTTTTAGCGTTTGTGAAGCTTCAGATATCCCTTTTTGAAACCAATAGAGTGAACAGAAGTTCTGCTTGGGTCTACTTGTTTCACTTCATGGTTTTTGAATGAAGGTAATCTCAAGCACACCTTCAGCAAAAAAAAGGTATCTCGAGCATCATATGCTTAAAGTGGATTATGAGTTTTGAACTTTTGTGCGTTGCTTTTCATGGGTTAAAGAAACTTCTCTGGAAATCCCACTGTTAATAAAAACCTTATCAAGAGGAAATTTCTCTGGACAAATCAGTCTAGCTTATGCCGTAGGAAGATTATAAGATGGACGCACATCAATTGAGATTTTCGTTCTTCACCTTTCTCATCTGCAATGGATTTCAGAGATTAATTGTACTATCCTTGCTTTGCTGTAAAGATTGGGATGTCCGTTCTGGACTGCATCTTCTGCGAGATAAAGGAAACCTTGATTTGACCATCACCTCTTGGGTTGTTCATGTGTCATGGATTCCAGAATAAATGGCAGCTGTGTCATGCATGCTTTTGCTGTATGGATTAGGTTGTTCTTTCAAATCCTTCCTCTGCTGAGATCATGGAAACTTTAATATGGGTATAGTTAGGGAAGACTGTCAGAAAGCTGCCAGTGGGCAAATAATTTCATTAAGTTGAGTTGCAGAAATTTACGTCGCGAAAAGAGGTAGATGAAGAGTGTTCTCTTGTGGAAGGCTATGAATTGCTTCTTAGATTGAGTGGTCACTCAGACCAGAAAATATTGTTCTTTCTTTATTAGTAGGGTATATTTCTGAATCATGAAAGCTAAATAATCACTGTAATGCTTTTGCGAAGATGGAAACCGTGATGAATTGATGAATGTAGTAATGGATGCATATGTCTCAATTGCCTGATGAGGAGCTACATAATCATCAGAATACATTCTCTGGAAGTCCTGAAAAAGGGAGGAATGTCAAATGTGTTTTCTTTTTACCAACGGAATAAGAATGAATTACTAAAAGGGTTTCTTGTAGAAGTTCCTCCGATAAGGGAGGAAAATTTATTGACAATTGGAATCACAAATGATGTGTTGATATATCTGTAATTTCTCATTGCATTCTTGATTAACACGAAAAAGGGGAGCCTGGTGCACAAAGTTTCCCCTATGCATGGGTCCATGGAAGGGCCATCTCGATCAACATACTGATTAGAAATTCTTGAGCTTGAACTCGCAAAATCTAAACCCGGTTGATATGTGCAGTGTGCTTGTGTACTGAACCAAAAAAAAAAGTTCAGTGGGCTAGTGGAAGTCATAATAACAACCTTTTTCCATATGTTCATTGAGAAAGATCAAAGTGACGAAGAGAATAATACTTCTTCACCTTTCTGTGGAGTGTCTTAAAATGTCTCTTCTACTTTGAGCTGACAATGCAAAAGGTCGTATGCAGCTAGCTGACGATGCCTGATTGATACTTGATTTTTTTACTCAAGGGACTTGTAACTCAAGAAAATGTGCAATGTGCTGTGCATTGAGCATCTAAATGGATCTTAAGTTCTGTTATTTGAAGAAATGATATCCATTTGTTGTGTTATTTGAAGCTTGAAGCAACATCAATCTGTACTGCCAACCCCTTGGCTTGAACAACATAGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGCGTAATTGACAAAAGAGTTTAATGCAATCCTGGGTGGGTCACTATCTGTTCGGTGATACTTTAAGCAGATGGATCTTCTTGACCTGGTATATTGTATATTGTGTGTAGAATAGATTTTAAGAGTTGTCTAACAGCAGTCCATCCATGGTGCCACTGATTCCAGTTTCCTTTTTGATCATTGCATCAGATGTGAAGCATACTCACGAGGAAAATTAAGTATTCATATTCTTGGATATTTTGAAGTCAGTCAGAGGTAGTCTTGTCCAATATAATACATCAAGTGTGAAACATGGCATGGAAGCATAAATTAGCATGCATGCCAGCAGAATTGAGCTATCATATTCTTGGATATTGTGAAGTCAGTTAGAGTGGGGGGTAATCTTTGACCAATATTGAGGGTATGATGGCGTTGGGATTCAATTCTAACTTGGTAAAGCATACATGAGTTCTGCATCTGCCCTCTTGAGTGTAGCATAGTCCATCAGATTGTTATGAGATCCACAGATAAAATGATATGGTTTGGGGTTTATAACCTTTTTTGTCGGTATAGTAGGTATATTGATGTAAAAATAGCATAAAAAAGGGTTTGGGGGTATATCACTATCTTTTTGCATTACCTCATTTACACAGTTCTGGAATAGGCATGAACTGCTTGCGTGATGTAAGCTTTAGGTTTGTCATTTTGTTAATGTCTTGTGTTTAAAGCAGCGGCTCAATGGGTAGAGCACTTGATCTTCTCTTATCAATATAACAGTTTTATGCGTGATACAGTTTTATGATTTACTTCTTGCTTCAGGAGATCAAAGCTTAAAAATGGTATCTGACATTGGATGATGCTCATCAAATGCATTGATTGCTGTTCCAATACAATGCCTTTTGATTTTAAATGATGATGATTGTAGTAGTGATAGCAGAGTTGTTAAGGCATAACGACAGTAGTAATACCAATAGCCATTGCACTTTAGACTAGTAGTGCAAAGCATATTGGCGGCGTAACAACTTTGGTGGAGGCTAATTGTGAATCCTGTTGTTGTTTTGATTGAGATGGTTAATCATAGTACATTCTTTTTCTGTAAGGATTTTCTGGAGTTGTTGAGTAGAGAGGAGGGGCAGATTGTCTGGTTGGGTCTTGTTACGTTTCTTGTATCCCTGTGTACCTTCTTGGTCCTGTTTCAATGATATTTTACCTTATAAATATGAGAGAGGGTGTAGGTTCAAATAGTTTTAATTCATTTTATTGAGATGTAACTGGATGGTTACTTGGAATTTGTGTTTATATTTGTCCTGGATATGAAGTTGTATGAGCTGTGAGCTTGTAATACGGAAATCCATCCCCTTTTTGTTGGATGAAGTTGCTACAGACAGTCATGCACTCAGTGGTCTCTTATCTCTGTTTGTGGCATACTTTGGGATGAGAAGTCAGATGTATCTACAAAGTTTGCTCTTCCCTTTATACCAGGCTTCATTCAAGTCTTACATGTCAGAAGGATAAATGATCATGAAACTTGTCAAATAAAAAGGATGAATGGTCATGAAAGTAATTTTGTTAGTTGACTAGGTCCTGTGAGTCTCTAAGTTAGGCTCTGTTCATGAATAGATGTTGGATTGCTTCTGCAGAACGTTGTCAAAACTTACATGTCATTGAGCTAAAACCGAGTAAAGTATCTGTGTATTTACTCCACCTGTGCCAATTTATTTGACATGTTTTGCTATATCAATGATTAGTTTGACCCTTTTCTGAAACTACACTCTTGATTAATTATTTTTGATTAAAATGTAGATAGTACAAAGATATACAAAAAGATGCATAAGTTGCAATTTTTCTTATTTCAAAATGGTGAAAAGGCAGAACATGTCAAGCATTTGAAGATGGGAGGATTTTTTTTCAACTCCAATTTAGGAGTTAATCTTTGGATTGAGTGTTCCCTAAGGATTTTGGTATTAGTACTGCGTTTTGGATCATTGTGCTGCAAATGCAAGGTGCTGATTGCTTCTATTGTTGACAGAGCAAATTTGAATTCCAGTTGAGACTGCAAGAGTTCATAGAGTTGGTAAGATCTGAAAACATGATGCGGGCCATTACATATGCTCGGAAATATCTTTCACCTTGGGGTTCTACCCACATGAAAGAGTTGCAGC-GGGTCTTGGCGACACTTGCTTTCAAGAGTAATACTGAATGT-ACAACTTAC</genome_strand>
        <mrna_strand>GGAAACGGTTCCCAACGGCAGTTCGCCGTCATCCACCACCACCACTACCAGCGCTGCCGTCACTACAAACGCCGCATCCGCAGCGGCGGTGGCTGCTGCCATCTCACCTAACGCACCTTCGTCAAAACTGAACCAGCTGTCCGAATCGCTCAAATTGGAGCACCAGTTCCTTCGTGTTCCCTTTGAGCATTACAAGAAGGCGATCCGCGCTAATCATCGTATTGTTGAGAAGGAACTCTCCGCTGTTATTAATGGAGTTTCAGATGCTGCTGAATCTGAAATGTCCCGTGATGATGCTGTACATCACCTTAATTCACTTGTATCCAGATTGCAAGGCCTCAAAAGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAAGAGGGGAGTCGAACAGAGAACCTGCAAGCGCAAAGATGCAGAGCACGGCTAGATCATCTAGAATCTGCTGATCCAGAAAATTTATCAGACTGGCATAACACCCGTTTGAAGCGGATACTGGTGGATTACATGCTGCGGATGTCATATTATAACACTGCTGTAAAGCTTGCTGAAAGCAGCAATATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTGTTGACGTTGATGTCTTTCATGAAGCAAAAAAGGTCATTGATGCTCTCCAAAACAAGGAGGTAACTCCTGCTTTAGCCTGGTGTGCTGATAACAAATCCAGGCTAAAGAAATCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAATTTGAATTCCAGTTGAGACTGCAAGAGTTCATAGAGTTGGTAAGATCTGAAAACATGATGCGGGCCATTACATATGCTCGGAAATATCTTTCACCTTGGGGTTCTACCCACATGAAAGAGTTGCAGCGGGGCCTTGGCGACACTTGCTTTTCAGAGTAATACTGAATGTAACAACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202057" ref_strand="+" ref_description="SGN-E202057 [cLEC-7-D18]">
      <seq>attagtcggaagaggggagtcgaacagagaacctgcaagcgcaaagatgcagagcacggctagatcatctagaatctgctgatccagaaaatttatcagactggcataacacccgtttgaagcggatactggtggattacatgctgcggatgtcatattataacactgctgtaaagcttgctgaaagcagcaatatccaggatcttgttgacgttgatgtctttcatgaagcaaaaaaggtcattgatgctctccaaaacaaggaggtaactcctgctttagcctggtgtgctgataacaaatccaggctaaagaaatcaaagagcaaatttgaattccagttgagactgcaagagttcatagagttggtaagatctgaaaacatgatgcgggccattacatatgctcggaaatatctttcaccttggggttctacccacatgaaagagttgcagcgggtcttggcgacacttgctttcaagaagaatactgaatgtacaacttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="3030" stop="10917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3330" g_stop="3529" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3530" i_stop="6232" i_length="2703">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6233" g_stop="6355" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="323" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6356" i_stop="10433" i_length="4078">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10434" g_stop="10617" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="507" r_length="184" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E202057" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3330" e_stop="3529"/>
          <exon e_start="6233" e_stop="6355"/>
          <exon e_start="10434" e_stop="10617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTCGGAAGAGGGGAGTCGAACAGAGAACCTGCAAGCGCAAAGATGCAGAGCACGGCTAGATCATCTAGAATCTGCTGATCCAGAAAATTTATCAGACTGGCATAACACCCGTTTGAAGCGGATACTGGTGGATTACATGCTGCGGATGTCATATTATAACACTGCTGTAAAGCTTGCTGAAAGCAGCAATATCCAGGTGGGTTTTCTTTGTTCGTTTACCGTTTATTATGTGGTATTATTTATCATGGTTAAAGGGTCATGTTGTTCCAGTTTTTTGAGTCACACAAGCTCCCCTTGTTTGACAAGTTTCTTGGATCTAGCATATAACTATACTTAAGACGTCGGTTGTTTAATGTTTGGTGTACGTCTTAGTATATGGCTGATTTTGGTCTTTTGATTTATGAATTGTTTCCCTGATTAAAAAAAACAACAACTATATTTCGTTTTTTTATCTTAACTTTCAATGGTTGTTTGTTGTTTAGGAGGTACAATTTAGAAGTGTGTTTGCCAACCATCAAGGGAATAGGACTGGTAAAGAAATAGAACTATATTGTATTACTTTTCTTAGATGGAGGATTATCATTTATGTTTGGATGTTTGGTGGGATTAGGAGGAAGTGAATAGATATGTAAGTTCCTCTTGATCTATTTTTGAGAAATTAAATCCTCTTTAAATCTTTTCTGGAGGGGTATCAAACTTCACATTTACTTCCTTATCGAACAGGAGACCAATGTGTATTGCCTCTTCTTCATCTTTCTCCTTTTCACATCTACCAAACATAATTTTGAAAACAAGTTCATTCTTCATGAATGTATACGAATGTTTCTTCATTGATCTCTGTACATTTTACGTTTAGTTTCTACTAGTTCTCTCTGTGAGCAGTCCCTTCGGGTTACAATAATAAAATTCTTAGTACTTTTGAGAAGGGAAGAATTCCTTCTGGCTTTCTCCGGTTTTCATAAGTAAATGTAATTTATTGTACTTTTCTTAGTTTCTTGTTTTTCTGTGGTTTTGTATCGTCTTTTCCCCTTATTGGGTGACGATTGATGCGATAGGTGGATTTGGGAAGGGCAATACTAGCTCTTGTTTTTATTTAACTGACTAATGTCGGGCAGAAGGACTACAAGTGCCTACTTACCTATAAATTATAATAATGATACAAGAACTACGCCTCAATCCCAAGCGAGTTAGGATCAGCTATTTGAATGTTCACTGTCCGTATAGCTCCATTTAAGTCCATCTCAGTCCAAAGTAATTGGAGTAATAATTTAACGAAAGAAAAGAGGAGAAAGACAAAAAAAATTGAAGGCACAACAATGCAACTTTGCATTGGAAGGATTGATATTTTGCTTCATCTGTTATGGAACAACCGAAGAAGAAGGAAAAGCTTTTTTATCTTTCCTTCTCCGAGAACCGTAGCGTGTTTGATATTGAACAAAAGTTGACATAGGTTATTTTGCACATGATGTTCCATTGATTCATTTTTTCCTTCTCTTTGTTGTCAATATGCACTACTTTTCTCAGGTTAGGATGCTGCTTCTGCTCCCAACCTTAAGTAATTATCTTGAATATGTTTGTCTTTTTGGGTCGGATACATTACCGCTGACAAGTGTTTCTGGATGTAGTTGCCTTGTTCTTCCAAAGTATTCCAGCTCTGTGGAAGATTTAAGGCATTAAAATAGATTCAGACCTAGCTTATCAGGATTCAGGAAAAAGGATTTCCATGTATATTTCATTTTTCTAAGTTGCCCATTATATATGTTAGATAGTTTTTTTGAAAAATGTCCATTTTGTGGTAATATATCTGTTATCTTTCTACATATCATGTACGAGTCTACATTTATAAGTATAAGGAAAACCTTTTTAAAAAAATAAACATAGAAATAATGAGGCTTTCTTGCCAAGATCGAAACTTATAGGGAAATTGGGACGGCAAGCTGGAATATGCTTTTTGCAAGTCATGAGAAAACAGAGTTGATCTGGGGACATTTCATCCATTGGGGAGAGGTCACAACTAGGAAGGTCTAAAGAAGGAATTCAACGATAGGGTGGTTGAGTGGTTTTGCTCTCTGGTTTTTCTGCCTATAGAAAGTACATTATAGCAATGGTGCCAACACCTTTTTCAAATGGTTCATAGCACTCACAAAATTTGTTCGTGGTGCCAAACTATAATCTGTTTGCCTGTAGGGTGCACAAGGATATTAAGTGAGCATGATTGGCATGCATAATCCATTTAGTCCTGCTTTTTCTTTACCAAAAAGAATCCCGTAGTCCTGCTTTGTTGTGTTTACTGTGACAATTTCTACCACTCAATCATCATAAATATAAAAATGTATTTTCTAAACTAGAAGCCACTATTTTTGAACTTTTTACTCAAGAATTGGTAATTCGTGCTTCCATAATATTTTTAGAGTATTTTGGGTTATTGTCGTATGGTTTCAACCAATATTCCATTTTGGTATTTAAATGAATTTCTGATGAGAATCAACTATCATTTTGATTGCAATTTCACCTCTCTTTGTTGTACACCTTGTATACGATTACTCCCATCACTTCAACAAACTGTTAATTTCATGTTTTCATCAGTGAGGCAATATTTCCTATAGTTGAGAACTTTGATGTGACCTCATTATAACATTTAAGATAGACATTTAAAACCTAATCCATACAGGATCTGGAGGCTCAAGCCGTGTAGTTAAATTTTAATACAACTTTTAGGTGATGCTGGTTCTTGCACTTGGTTTAATCTATCTTTATGATGTGTTTACTTGAATAATGCAGTAACTATGTCGGCTACCCAAATTGATGCTTCTTTTTGTAGAGTCGATTGTGCTTGTGAATTTCTTTAGCTGCAAAATTTTTTAGCCGTTGTGATTAAGTATGGTCTTTTCTATTCTAGGATCTTGTTGACGTTGATGTCTTTCATGAAGCAAAAAAGGTCATTGATGCTCTCCAAAACAAGGAGGTAACTCCTGCTTTAGCCTGGTGTGCTGATAACAAATCCAGGCTAAAGAAATCAAAGGTACGATTATTTCTGTTTCTTTGAGCTTGTCTTTAATATTCTTATTACTGCTTTAACAATTCTATGTTTGTATTGTAATCAGCGACAAAAGTGATATTTTCTTCATGTGGCTAACCACTAATTCTGGTTTCAAGAAGATGTTATTCAATTCTGTAGCTCAAATGTGAGAAAATATGAAAAAGTCTCAGATCAGCCTCTTATCATGTTTACCGGGTTGAGTGGATCTCCTTCTGATTAATTTGATGGACATAAAGTTCAATTAGTGTATGTTAGACACAGATAGCATTCGATGACTGCAGACATTTTGGGCTGCCAATGTGCAGAACATAGATAAAAGTTAGTGAAAGGGTGAAAACCTATGTGAAGCCTGATGGTTTTTCAATTGAGAAAGGCATCCCATTGTGTTTGATGGGTTTTTAGCGTTTGTGAAGCTTCAGATATCCCTTTTTGAAACCAATAGAGTGAACAGAAGTTCTGCTTGGGTCTACTTGTTTCACTTCATGGTTTTTGAATGAAGGTAATCTCAAGCACACCTTCAGCAAAAAAAAGGTATCTCGAGCATCATATGCTTAAAGTGGATTATGAGTTTTGAACTTTTGTGCGTTGCTTTTCATGGGTTAAAGAAACTTCTCTGGAAATCCCACTGTTAATAAAAACCTTATCAAGAGGAAATTTCTCTGGACAAATCAGTCTAGCTTATGCCGTAGGAAGATTATAAGATGGACGCACATCAATTGAGATTTTCGTTCTTCACCTTTCTCATCTGCAATGGATTTCAGAGATTAATTGTACTATCCTTGCTTTGCTGTAAAGATTGGGATGTCCGTTCTGGACTGCATCTTCTGCGAGATAAAGGAAACCTTGATTTGACCATCACCTCTTGGGTTGTTCATGTGTCATGGATTCCAGAATAAATGGCAGCTGTGTCATGCATGCTTTTGCTGTATGGATTAGGTTGTTCTTTCAAATCCTTCCTCTGCTGAGATCATGGAAACTTTAATATGGGTATAGTTAGGGAAGACTGTCAGAAAGCTGCCAGTGGGCAAATAATTTCATTAAGTTGAGTTGCAGAAATTTACGTCGCGAAAAGAGGTAGATGAAGAGTGTTCTCTTGTGGAAGGCTATGAATTGCTTCTTAGATTGAGTGGTCACTCAGACCAGAAAATATTGTTCTTTCTTTATTAGTAGGGTATATTTCTGAATCATGAAAGCTAAATAATCACTGTAATGCTTTTGCGAAGATGGAAACCGTGATGAATTGATGAATGTAGTAATGGATGCATATGTCTCAATTGCCTGATGAGGAGCTACATAATCATCAGAATACATTCTCTGGAAGTCCTGAAAAAGGGAGGAATGTCAAATGTGTTTTCTTTTTACCAACGGAATAAGAATGAATTACTAAAAGGGTTTCTTGTAGAAGTTCCTCCGATAAGGGAGGAAAATTTATTGACAATTGGAATCACAAATGATGTGTTGATATATCTGTAATTTCTCATTGCATTCTTGATTAACACGAAAAAGGGGAGCCTGGTGCACAAAGTTTCCCCTATGCATGGGTCCATGGAAGGGCCATCTCGATCAACATACTGATTAGAAATTCTTGAGCTTGAACTCGCAAAATCTAAACCCGGTTGATATGTGCAGTGTGCTTGTGTACTGAACCAAAAAAAAAAGTTCAGTGGGCTAGTGGAAGTCATAATAACAACCTTTTTCCATATGTTCATTGAGAAAGATCAAAGTGACGAAGAGAATAATACTTCTTCACCTTTCTGTGGAGTGTCTTAAAATGTCTCTTCTACTTTGAGCTGACAATGCAAAAGGTCGTATGCAGCTAGCTGACGATGCCTGATTGATACTTGATTTTTTTACTCAAGGGACTTGTAACTCAAGAAAATGTGCAATGTGCTGTGCATTGAGCATCTAAATGGATCTTAAGTTCTGTTATTTGAAGAAATGATATCCATTTGTTGTGTTATTTGAAGCTTGAAGCAACATCAATCTGTACTGCCAACCCCTTGGCTTGAACAACATAGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGCGTAATTGACAAAAGAGTTTAATGCAATCCTGGGTGGGTCACTATCTGTTCGGTGATACTTTAAGCAGATGGATCTTCTTGACCTGGTATATTGTATATTGTGTGTAGAATAGATTTTAAGAGTTGTCTAACAGCAGTCCATCCATGGTGCCACTGATTCCAGTTTCCTTTTTGATCATTGCATCAGATGTGAAGCATACTCACGAGGAAAATTAAGTATTCATATTCTTGGATATTTTGAAGTCAGTCAGAGGTAGTCTTGTCCAATATAATACATCAAGTGTGAAACATGGCATGGAAGCATAAATTAGCATGCATGCCAGCAGAATTGAGCTATCATATTCTTGGATATTGTGAAGTCAGTTAGAGTGGGGGGTAATCTTTGACCAATATTGAGGGTATGATGGCGTTGGGATTCAATTCTAACTTGGTAAAGCATACATGAGTTCTGCATCTGCCCTCTTGAGTGTAGCATAGTCCATCAGATTGTTATGAGATCCACAGATAAAATGATATGGTTTGGGGTTTATAACCTTTTTTGTCGGTATAGTAGGTATATTGATGTAAAAATAGCATAAAAAAGGGTTTGGGGGTATATCACTATCTTTTTGCATTACCTCATTTACACAGTTCTGGAATAGGCATGAACTGCTTGCGTGATGTAAGCTTTAGGTTTGTCATTTTGTTAATGTCTTGTGTTTAAAGCAGCGGCTCAATGGGTAGAGCACTTGATCTTCTCTTATCAATATAACAGTTTTATGCGTGATACAGTTTTATGATTTACTTCTTGCTTCAGGAGATCAAAGCTTAAAAATGGTATCTGACATTGGATGATGCTCATCAAATGCATTGATTGCTGTTCCAATACAATGCCTTTTGATTTTAAATGATGATGATTGTAGTAGTGATAGCAGAGTTGTTAAGGCATAACGACAGTAGTAATACCAATAGCCATTGCACTTTAGACTAGTAGTGCAAAGCATATTGGCGGCGTAACAACTTTGGTGGAGGCTAATTGTGAATCCTGTTGTTGTTTTGATTGAGATGGTTAATCATAGTACATTCTTTTTCTGTAAGGATTTTCTGGAGTTGTTGAGTAGAGAGGAGGGGCAGATTGTCTGGTTGGGTCTTGTTACGTTTCTTGTATCCCTGTGTACCTTCTTGGTCCTGTTTCAATGATATTTTACCTTATAAATATGAGAGAGGGTGTAGGTTCAAATAGTTTTAATTCATTTTATTGAGATGTAACTGGATGGTTACTTGGAATTTGTGTTTATATTTGTCCTGGATATGAAGTTGTATGAGCTGTGAGCTTGTAATACGGAAATCCATCCCCTTTTTGTTGGATGAAGTTGCTACAGACAGTCATGCACTCAGTGGTCTCTTATCTCTGTTTGTGGCATACTTTGGGATGAGAAGTCAGATGTATCTACAAAGTTTGCTCTTCCCTTTATACCAGGCTTCATTCAAGTCTTACATGTCAGAAGGATAAATGATCATGAAACTTGTCAAATAAAAAGGATGAATGGTCATGAAAGTAATTTTGTTAGTTGACTAGGTCCTGTGAGTCTCTAAGTTAGGCTCTGTTCATGAATAGATGTTGGATTGCTTCTGCAGAACGTTGTCAAAACTTACATGTCATTGAGCTAAAACCGAGTAAAGTATCTGTGTATTTACTCCACCTGTGCCAATTTATTTGACATGTTTTGCTATATCAATGATTAGTTTGACCCTTTTCTGAAACTACACTCTTGATTAATTATTTTTGATTAAAATGTAGATAGTACAAAGATATACAAAAAGATGCATAAGTTGCAATTTTTCTTATTTCAAAATGGTGAAAAGGCAGAACATGTCAAGCATTTGAAGATGGGAGGATTTTTTTTCAACTCCAATTTAGGAGTTAATCTTTGGATTGAGTGTTCCCTAAGGATTTTGGTATTAGTACTGCGTTTTGGATCATTGTGCTGCAAATGCAAGGTGCTGATTGCTTCTATTGTTGACAGAGCAAATTTGAATTCCAGTTGAGACTGCAAGAGTTCATAGAGTTGGTAAGATCTGAAAACATGATGCGGGCCATTACATATGCTCGGAAATATCTTTCACCTTGGGGTTCTACCCACATGAAAGAGTTGCAGCGGGTCTTGGCGACACTTGCTTTCAAGAGTAATACTGAATGTACAACTTACA</genome_strand>
        <mrna_strand>ATTAGTCGGAAGAGGGGAGTCGAACAGAGAACCTGCAAGCGCAAAGATGCAGAGCACGGCTAGATCATCTAGAATCTGCTGATCCAGAAAATTTATCAGACTGGCATAACACCCGTTTGAAGCGGATACTGGTGGATTACATGCTGCGGATGTCATATTATAACACTGCTGTAAAGCTTGCTGAAAGCAGCAATATCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTGTTGACGTTGATGTCTTTCATGAAGCAAAAAAGGTCATTGATGCTCTCCAAAACAAGGAGGTAACTCCTGCTTTAGCCTGGTGTGCTGATAACAAATCCAGGCTAAAGAAATCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAATTTGAATTCCAGTTGAGACTGCAAGAGTTCATAGAGTTGGTAAGATCTGAAAACATGATGCGGGCCATTACATATGCTCGGAAATATCTTTCACCTTGGGGTTCTACCCACATGAAAGAGTTGCAGCGGGTCTTGGCGACACTTGCTTTCAAGAAGAATACTGAATGTACAACTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219847" ref_strand="+" ref_description="SGN-E219847 [cLEL-24-I19](-)">
      <seq>ggcagtgatcaactcccccatgacttcatgttttgggggccattggatatatgggaaccccccagtttgcaagcagaaaattcataatgatgtggaccttaaaaggaggtttttatttgtacagcatatcagttgcatttgaatgcccccgtaatcctaaaaatgctttttacacacccctggccccacaaatcagttgcatttagtaaaagattttaaggacctgttggctagtgggcagttgtagttggtggcacatgtgggggcattcaagggggtggttttacagtccatgaagttgatagaaacttagctatgtcagagttaaagctctagcctagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="11602" stop="54041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11902" g_stop="12252" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12253" i_stop="12377" i_length="125">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12378" g_stop="12397" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="371" r_length="20" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12398" i_stop="12650" i_length="253">
            <donor d_prob="0.942" d_score="0.00"/>
            <acceptor a_prob="0.666" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12651" g_stop="12672" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="393" r_length="22" r_score="0.545"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E219847" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11902" e_stop="12252"/>
          <exon e_start="12378" e_stop="12397"/>
          <exon e_start="12651" e_stop="12672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGTGATCAACTCCCCCATGACTTCATGTTTTGGGGACAATTGTATATATGGGAACCCCCAAGTCTGCAAGCAGAAAATTCATAATGATGTGAACTTTAAAAGGAGTTTTTGATTTGTACAGCATATCAGTTGCATTTGAATGCACCTGTAATCCTAAAGATGCTTTTCACACACCCCTGCCCACACAACTCAGTTGCATTTAGTAGAAGATCTGAAGTACCTGTTGGCTAGTGGTCAGTTGTAGTTGGTGGCACATGTGGGGGCATTCAAGGGTGTGGTTTAACAGTCAATGAAGTTGATAGAAACTTAGCTATGTCAGAGTTAAAGCTCTAGCATAGAAAAAAAATTAAGGTGTTCTCTTTTCATTTGCCTAAGCTTTGATAAGTAGAGTTGTTAAAGTATATGTGTTGGTTGGAGGTAACAAATAATTGGTTTGTCGTTGCAACTTGGTTTAAATATCGATATTATTGGAGAAAAAAAAAAAAAAAAAAAGGTAACCCAACTGTTACTTGTGACCTAATCAGGTCCAATGATGAATAAAACACTCATCTTTCAAACACCATTTACACTAATTCTCGAGTGTTTACAAGTGTTATTAGAGGATGTGTTTGGTACGAAGAAAAGTGTTTACCACGAAAAATATTTTGAACCGAAGTTCTATAAATCATAAACACTGCATTAAAACGTTCGATCCAGATGCAATGGTATATCATTAGATGGTTTAATTTTGGGATATATAATATCAGGAAGCATATGTATAGCATAAAA</genome_strand>
        <mrna_strand>GGCAGTGATCAACTCCCCCATGACTTCATGTTTTGGGGGCCATTGGATATATGGGAACCCCCCAGTTTGCAAGCAGAAAATTCATAATGATGTGGACCTTAAAAGGAGGTTTTTATTTGTACAGCATATCAGTTGCATTTGAATGCCCCCGTAATCCTAAAAATGCTTTTTACACACCCCTGGCCCCACAAATCAGTTGCATTTAGTAAAAGATTTTAAGGACCTGTTGGCTAGTGGGCAGTTGTAGTTGGTGGCACATGTGGGGGCATTCAAGGGGGTGGTTTTACAGTCCATGAAGTTGATAGAAACTTAGCTATGTCAGAGTTAAAGCTCTAGCCTAGAAAAAAAAAA.............................................................................................................................AAAAAAAAAAAAAAAAAAAA.............................................................................................................................................................................................................................................................AAACCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219895" ref_strand="+" ref_description="SGN-E219895 [cLEL-24-I19](-)">
      <seq>ttcatgttttgggggcaattgtatatatgggaaccccccagtctgcaagcagaaaattcataatgatgtgaactttaaaaagagttttttttttgtacagcatatcagttgcctttgaatgcccctgtaatcctaaaaatgcttttcacacacccctgcccccccaaatcagttgcatttagtaaaaaatcttaagtacctgttggctaatggtcagttgtagttggtggcccatgtgggggcattcaagggtgtggttttacagtcaatgaagttgataaaaacttagctatgtcaaagttaaagctctagcatagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="11626" stop="12696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11926" g_stop="12249" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12250" i_stop="12377" i_length="128">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12378" g_stop="12397" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="344" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="345" polyA_stop="369"/>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E219895" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11926" e_stop="12249"/>
          <exon e_start="12378" e_stop="12397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGTTTTGGGGACAATTGTATATATGGGAACCCCCAAGTCTGCAAGCAGAAAATTCATAATGATGTGAACTTTAAAAGGAGTTTTTGATTTGTACAGCATATCAGTTGCATTTGAATGCACCTGTAATCCTAAAGATGCTTTTCACACACCCCTGCCCACACAACTCAGTTGCATTTAGTAGAAGATCTGAAGTACCTGTTGGCTAGTGGTCAGTTGTAGTTGGTGGCACATGTGGGGGCATTCAAGGGTGTGGTTTAACAGTCAATGAAGTTGATAGAAACTTAGCTATGTCAGAGTTAAAGCTCTAGCATAGAAAAAAAATTAAGGTGTTCTCTTTTCATTTGCCTAAGCTTTGATAAGTAGAGTTGTTAAAGTATATGTGTTGGTTGGAGGTAACAAATAATTGGTTTGTCGTTGCAACTTGGTTTAAATATCGATATTATTGGAGAAAAAAAAAAAAAAAAAAAG</genome_strand>
        <mrna_strand>TTCATGTTTTGGGGGCAATTGTATATATGGGAACCCCCCAGTCTGCAAGCAGAAAATTCATAATGATGTGAACTTTAAAAAGAGTTTTTTTTTTGTACAGCATATCAGTTGCCTTTGAATGCCCCTGTAATCCTAAAAATGCTTTTCACACACCCCTGCCCCCCCAAATCAGTTGCATTTAGTAAAAAATCTTAAGTACCTGTTGGCTAATGGTCAGTTGTAGTTGGTGGCCCATGTGGGGGCATTCAAGGGTGTGGTTTTACAGTCAATGAAGTTGATAAAAACTTAGCTATGTCAAAGTTAAAGCTCTAGCATAGAAAAAAA................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699192" ref_strand="+" ref_description="SGN-E699192 [FA09AA11]">
      <seq>cgatgaattgtatgatgaaatcaaatcttttcttcaaaacctgaaaccccatttcgttttctttgattttgctcattgggttactgaaatagcattagaaattggggatatcaacactatttgttataaacttacttcccctgctacatcagctatttcattgattcgatctccggaaaagagtgttttcatggcatcaactgcagctgaaaaagttaggccaccaccaggttacccttctactactgtggtgttgcacgaacacgaagctaagttgctagagtttctgtttcaagaatatggcaagggagtgacaatatatgaacggttgacaaagggaatgacgctatgcgatgcaatagctttgaaaacatgtcgagagattgaaggaacatttggtgactacatcgccacacaatttaaaaaaccagtcctttacactggacctgttcttcctgatcctgaaaaggggcctttagcagaacatggattatcgaattggctcgagaagtttgaaccaggatcggtggtgttctgtgcatttggaagccaattgattctcgaaaagaagcagtttcaagaacttgttttaggccttgaactaacaggtctgccatttctggtagttcttaagccacctgaaggaacaaattcagtagaagaagccctgcctgagggattcaaagaaagggttcaagaaaaaggattggttcttgcttgttgggtgcctcagttgaagattttaactcacaaatcagttggttgttttgtgtcacactgtggttatggatcaatgtgggaatctttagcattgtgtgattgtcaattagtacttttgccaagtgctaatgatcaaactttaagtgctaggatgatggaacaagatcttaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="18680" stop="12822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18381" g_stop="18152" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18151" i_stop="13785" i_length="4367">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13784" g_stop="13122" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="893" r_length="663" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E699192" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18381" e_stop="18152"/>
          <exon e_start="13784" e_stop="13122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGAATTGTATGATGAAATCAAATCTTTTCTTCAAAACCTGAAACCCCATTTCGTTTTCTTTGATTTTGCTCATTGGGTTACTGAAATAGCATTAGAAATTGGGGATATCAACACTATTTGTTATAAACTTACTTCCCCTGCTACATCAGCTATTTCATTGATTCGATCTCCGGAAAAGAGTGTTTTCATGGCATCAACTGCAGCTGAAAAAGTTAGGCCACCACCAGGTTATCCTTCTGCCCCCCTCACTCTCTTTTTTTCTGGAAAAATTTCAAAAAACAGCTATAGTTTGAGGTTTAATTAATAATCATAGTGATAGTTTGGATAGCAATTTTTCGTGATCTATATATAAGTTACGTATTCAAGCTGTGAAAGCAGTTACTAATGTTTGTATTAGGTAGACTAGACTGTCTACATCACATATTTTGTGGTGCATTCTTCACCCAAACTCGCGTTAGTGGGATGATTTTCGCACCGAACTATCCTATTTGAAGCAATTAGATGTCCAATTCGAGCCTATATGACATGACTGATCAATAGATCCACCTTTATCATATAGTTCATACATCTATAGCTTTTGATTAATTGCATTTATGTGGAGACAATAGTTACAACCACCATAGAGAGTTTGTATTTGTATTAGAAATATGTTAAATATGTATAAACATTGATTACAACTCCAATAATTAAATGAGCTATGGTTTTTAATTGCAAAATACAAAATTCATGAACTTTAAATTTTGGTCTTAGCTCTACATGTGAGTCGATTCTTATAAGCTTGGGTTTTCTGAACATGACTCATTTGACAACTCAATACATGGATGTCATAAATCTATTGACATTAAAAAGGTAATCTCTTTTTACAATAAGCTAATGGAAAATGGTCAAAAATACCCTTAAACTATCTGAAATAGCTCATATATACCCTCAAACTATATTTTGGCTCAAAAATACCCTTTCCGTCAAACTATTGGGTCAAAAATGTCCTTCTAATTAACGGAAATTGTTAAATGCCATGTGGATGCCAACATAGAATAAAAGGAAAAGGGTCAAAAGTACCCTTAAACTATCCGAAATAGCTCATATTTACCCTTAAGCTATATTTCGGTTCAAAAACTACCCTTCCTGTCAAACTTTTGGGTCAAAAGTGACCTTCTTATTAGCGAAAGTTGTTAAATTCCACATGGCCACATTGACTAAAGCCCTAAATCTTAATTACTCATTTTTCTCTCATTTCATTATTTTCCAGAAACGATTTCACCCCTTCTCCCTCATTTCGCGGCTAAGGTTTATAGTTTTCTTCATTGCTGGGTTTCAAAGTGGATATTCGTGGTTATAGGTTAGTAAACTTTTTTCTGATTTTATTGTGTTTACAACCACAAAAATCCACTTTGAAACTCATCACCCAAGAAAGTTATGAAACCTTGGCCGCAAAATGACGGGAAAGTTGTGAAATTCTATCTATCATACTTTGAAATCATAACTGTAATAAAATAAAAAAAAATATTTACTAACCTACAACCATGAATATCCACTTTGAAACTCAGCCCCGAAGAAAGCTACGAAGCCTTAGCTGTGAAATTAGGGGAAAGTTGTGAAATCCTAACTATCATACTTTGAAATTGTAAACATAATAAAATAAGAAAAAATATTTACTAACCTACAAGTGTGAATATCCACTTTGAAACCCAACCACGAAGAAACGTATGAAACCCTAGCCGCGAAATGGTGGAGAACGGGTGAATATATCATTTCTGAAATAATGAAATGAGGGGAGAAATAATTAGGATTTAGGAATTTAGTCTATGTGGCAGTAGAACCTTATTGACATGCAATGTGGCATCCACATGACATTTAACAACTTCTGTTAATAAGAAGGGTACTTTTGATCCAATAGTTTGCCGGGAAGGGTGGTTTTAAGCCGAAATATAGTTTAAGGGTATATATGAGCTATTTTGGATAGTTTAAGGGTATTTTTGACCCTTTGTATTTAGTCTGCGTGGCAGTGGAGTCATATTGGCATGCAATGTGGCATCCATATGGCATCCACGTGGCATTTAACAATTTCCGTTAATAAGAAATGTTTTTTTGACCCAATAGAATGACGAGAAGGGTAGTTTTGAGCCGAAATAAAGTTTAAGGGTATATTTGAGCTATTTCGAATAGTTCAGGGGTATTTTTGAGCCTTTTCCGTTAAGCTAGTTATGTAAAGATTGTTTGTTTGTTCATATAAACAATGTATTTAAGAATCTTTTATTTCTCATCAAGATGATTTGATTCTTTCGTTTGCATCTTCTTGATGCCTTGAAATGAATCTACTTACTTCATCCAAAAAAATGATTTGAGTCGGTCATTTCAGTATTAAACAAGCATGATATTCTTCATTGACCTAACATATTGCTCGAGCTTTTCAAAAATATTGTCTCATCTAAGAGACTAAGACCGTCTCCAACTTTACTCTATTTTAGTCTCTATCTCTATATTTGAAAAGTAAAATAGAGAATGCTCTCTCCAAATACTTTCTATTTTACCCTCTACTCTCCTATTTTTAGAGAGTTGAATAGTAGTTATCCAACTTTGGAGGATTACTATTCATACTCTCTATTTTTGTTTTAGAATATTGTATTATTACATCTATTATTTTGTGATTAACATATTATTTTCATATAAGGATATTAATTAAATCTCTAATATTCATAATTTGTTGAAAATGTAATATAACATTTTAAAAAATATATTATTTAGTATATATTACTTTCATCCCGAATAAATACATTTCAAATATTTTTTTAAAATTTTCATCACTTGAATGAATATAATTTGATATTATTATTAATAAATACTATGAAGAATGCACAAAATTTAATGAAAAAGTGAAATTTAAATAATAAATACAACACATAACGGACTAATTTAAATACAAGATACAGTACAACGCAATACATAACACAATTATTTTAAAGATCACAATAATAATTTAATAATCCGGTAGGTCCTTTCCAAACTTAACAATATTCCCAAAAAAATTGATGAATGATCCAGATAAGTTGTGATTGCGGTTGTGCTTGTTGTTGTTTTCTCCAGTTATTCGTAGTTGTTCTTTAGAAATTTAGAATAAAATATAAATCTATATTATATAAAGAATGTGAAATAAAATAAAATTTTATATTAATGTAAATTATATAGGGTGATTATTTGGAAAAAAGAAATAAAGGATTTAAAAGATAAATAATAATATTATATCGTAGAAGATTCTTTTTAGAAAGTAAAGTAAAGAATTGAGTTAGAGTAGGTTGTCTAAACAAAACAGAGAAATTTATATTTGGTGGAGAGTTAAATAGAAGAGGGTAGGGTTGGAGATCCCAAGGCAAAAAAAAATGGCAGATTCCATACACTCAAAGCTCCAAATAGTGATGTTCCCATGGCTTGCTTTTGGCCATTTAATCCCATTTCTCAGCCTCTCCAATGAACTTGCTAAAAAGGGTCACAGAATCTCATTCTTGTTACCCAAAAATGCTGAAATTAAACTTCAAAAATTCAATCTTTACCCTAATCTCATCACTTTCCACCCACTCAAAATCCCTCATATCCATGGCCTTCCATATGGAGCTGAAACTACAGCTGATGTGCCTAGAGCTTTGGAAACTCTACTAGCAGCAGCTATGGATGAATTGTATGATGAAATCAAATCTTTTCTTCGAAATCTAAAACCCCATTTCGTTTTCTTTGATTTTGCTCATTGGGTTCCTGAAATAGCAACAGAAATTGGGGGTATCAAGACTTTATGTTATAAAACCGTTTGCCCTGCTACATCAGCTTATTCATTGGTTCGATCACCGGAAAAGAGTGTTTTTATGGCATCAACTGCAGCTGAAAAAGTTAGGCCACCACCAGGTTATCCTTCTGCCCTCCTCCCTCTTTTTTTTTCCGGAGAATTTTCGAATATAGCTATAGCTTGAGGCTTAATTAACAATCCTAGTGATAATTTGGATAATTATTAATGCAGCTCGGGTTTGTGAGATTCGCTCTGTGTCAATAATACAACAGTTTCTGAATACAAAGTGAATTAATTTTTCGTGACTACACAGAAACATAATTTGAAAAGTCAATCCTTTACACAGGACCTGTTCTTCCTGAGCCTGAAAAGGGGCCTTTAGGAGAACATCAATTATCGAGTTGTCTCGAGAAATTCGATCTAGGATCAGTAGTTTCTGTACATTTGGGAGGTAATTGAAACTTGAAAAGAGGCAATTTTAAGAACTTGTCTTAGGCCTTGAACTAACTGATCTACCATTTCTTGTTGTTGTTAAACCACCTGAATCCCTTGACATAAGAAAATTGTGTGTGTGATAACAAGTTAACGGGGTTTTAAAATTTGTTTTTGCTCACAAGGTTGAAATGCAGCTATCTTTTGAACCCTTTATATAAAAACCTGACCAGGCAACTGCTTCCAGCTTGTTCGAAAAACAAAGGGGAAACTGTCACGCTTGTAACTTTAGTACCTACATTATGCATCATATAGTGCCACAATTTGCTAGTAAATTTGCAACTTTATTATGCTCTCTAAAAATGTGTTCAATTGGTGGATCTCCAGGTTACCCTTCTACTACTGTGGTGTTGCACGAACACGAAGCTAAGTTGCTAGAGTTTCTGTTTCAAGAATATGGCAAGGGAGTGACAATATATGAACGGTTGACAAAGGGAATGACGCTATGCGATGCAATAGCTTTGAAAACATGTCGAGAGATTGAAGGAACATTTGGTGACTACATCGCCACACAATTTAAAAAACCAGTCCTTTACACTGGACCTGTTCTTCCTGATCCTGAAAAGGGGCCTTTAGCAGAACATGGATTATCGAATTGGCTCGAGAAGTTCGAACCAGGATCGGTGGTGTTCTGTGCATTTGGAAGCCAATTGATTCTCGAAAAGAAGCAGTTTCAAGAACTTGTTTTAGGCCTTGAACTAACAGGTCTGCCATTTCTGGTAGTTCTTAAGCCACCTGAAGGAACAAATTCAGTAGAAGAAGCCCTGCCTGAGGGATTCAAAGAAAGGGTTCAAGAAAAAGGATTGGTTCTTGCTTGTTGGGTGCCTCAGTTGAAGATTTTAACTCACAAATCAGTTGGTTGTTTTGTGTCACACTGTGGTTATGGATCAATGTGGGAATCTTTAGCATTGTGTGATTGTCAATTAGTACTTTTGCCAAGTGCTAATGATCAAACTTTAAGTGCTAGGATGATGGAACAAGATCTTAAGG</genome_strand>
        <mrna_strand>CGATGAATTGTATGATGAAATCAAATCTTTTCTTCAAAACCTGAAACCCCATTTCGTTTTCTTTGATTTTGCTCATTGGGTTACTGAAATAGCATTAGAAATTGGGGATATCAACACTATTTGTTATAAACTTACTTCCCCTGCTACATCAGCTATTTCATTGATTCGATCTCCGGAAAAGAGTGTTTTCATGGCATCAACTGCAGCTGAAAAAGTTAGGCCACCACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCCTTCTACTACTGTGGTGTTGCACGAACACGAAGCTAAGTTGCTAGAGTTTCTGTTTCAAGAATATGGCAAGGGAGTGACAATATATGAACGGTTGACAAAGGGAATGACGCTATGCGATGCAATAGCTTTGAAAACATGTCGAGAGATTGAAGGAACATTTGGTGACTACATCGCCACACAATTTAAAAAACCAGTCCTTTACACTGGACCTGTTCTTCCTGATCCTGAAAAGGGGCCTTTAGCAGAACATGGATTATCGAATTGGCTCGAGAAGTTTGAACCAGGATCGGTGGTGTTCTGTGCATTTGGAAGCCAATTGATTCTCGAAAAGAAGCAGTTTCAAGAACTTGTTTTAGGCCTTGAACTAACAGGTCTGCCATTTCTGGTAGTTCTTAAGCCACCTGAAGGAACAAATTCAGTAGAAGAAGCCCTGCCTGAGGGATTCAAAGAAAGGGTTCAAGAAAAAGGATTGGTTCTTGCTTGTTGGGTGCCTCAGTTGAAGATTTTAACTCACAAATCAGTTGGTTGTTTTGTGTCACACTGTGGTTATGGATCAATGTGGGAATCTTTAGCATTGTGTGATTGTCAATTAGTACTTTTGCCAAGTGCTAATGATCAAACTTTAAGTGCTAGGATGATGGAACAAGATCTTAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703389" ref_strand="+" ref_description="SGN-E703389 [FA21BD12]">
      <seq>ctcaaatcaaacttcaaaatctcaatctttaccctaatctcatcactttccacacactcaaaatccctcatatccatggccttccatatggagctgaaactacagctgatgtgcctagatctttggaaactctactagcaacagctatggatgaattgtatgatgaaatcaaatcttttcttcaaaacctgaaaccccatttcgttttctttgattttgctcattgggttactgaaatagcattagaaattggggatatcaacactatttgttataaacttacttcccctgctacatcagctatttcattgattcgatctccggaaaagagtgttttcatggcatcaactgcagctgaaaaagttaggccaccaccaggttacccttctactactgtggtgttgcacgaacacgaagctaagttgctagagtttctgtttcaagaatatggcaagggagtgacaatatatgaacggttgacaaagggaatgacgctatgcgatgcaatagctttgaaaacatgtcgagagattgaaggaacatttggtgactacatcgccacacaatttaaaaaaccagtcctttacactggacctgttcttcctgatcctgaaaaggggcctttagcagaacatggattatcgaattggctcgagaagtttgaaccaggatcggtggtgttctgtgcatttggaagccaattgattctcgaaaagaagcagtttcaagaacttgttttaggccttgaactaacaggtctgccatttctggtagttcttaagccacctgaaggaacaaattcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="18829" stop="13058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18529" g_stop="18152" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18151" i_stop="13785" i_length="4367">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13784" g_stop="13358" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="805" r_length="427" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E703389" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18529" e_stop="18152"/>
          <exon e_start="13784" e_stop="13358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAATCAAACTTCAAAATCTCAATCTTTACCCTAATCTCATCACTTTCCACACACTCAAAATCCCTCATATCCATGGCCTTCCATATGGAGCTGAAACTACAGCTGATGTGCCTAGATCTTTGGAAACTCTACTAGCAACAGCTATGGATGAATTGTATGATGAAATCAAATCTTTTCTTCAAAACCTGAAACCCCATTTCGTTTTCTTTGATTTTGCTCATTGGGTTACTGAAATAGCATTAGAAATTGGGGATATCAACACTATTTGTTATAAACTTACTTCCCCTGCTACATCAGCTATTTCATTGATTCGATCTCCGGAAAAGAGTGTTTTCATGGCATCAACTGCAGCTGAAAAAGTTAGGCCACCACCAGGTTATCCTTCTGCCCCCCTCACTCTCTTTTTTTCTGGAAAAATTTCAAAAAACAGCTATAGTTTGAGGTTTAATTAATAATCATAGTGATAGTTTGGATAGCAATTTTTCGTGATCTATATATAAGTTACGTATTCAAGCTGTGAAAGCAGTTACTAATGTTTGTATTAGGTAGACTAGACTGTCTACATCACATATTTTGTGGTGCATTCTTCACCCAAACTCGCGTTAGTGGGATGATTTTCGCACCGAACTATCCTATTTGAAGCAATTAGATGTCCAATTCGAGCCTATATGACATGACTGATCAATAGATCCACCTTTATCATATAGTTCATACATCTATAGCTTTTGATTAATTGCATTTATGTGGAGACAATAGTTACAACCACCATAGAGAGTTTGTATTTGTATTAGAAATATGTTAAATATGTATAAACATTGATTACAACTCCAATAATTAAATGAGCTATGGTTTTTAATTGCAAAATACAAAATTCATGAACTTTAAATTTTGGTCTTAGCTCTACATGTGAGTCGATTCTTATAAGCTTGGGTTTTCTGAACATGACTCATTTGACAACTCAATACATGGATGTCATAAATCTATTGACATTAAAAAGGTAATCTCTTTTTACAATAAGCTAATGGAAAATGGTCAAAAATACCCTTAAACTATCTGAAATAGCTCATATATACCCTCAAACTATATTTTGGCTCAAAAATACCCTTTCCGTCAAACTATTGGGTCAAAAATGTCCTTCTAATTAACGGAAATTGTTAAATGCCATGTGGATGCCAACATAGAATAAAAGGAAAAGGGTCAAAAGTACCCTTAAACTATCCGAAATAGCTCATATTTACCCTTAAGCTATATTTCGGTTCAAAAACTACCCTTCCTGTCAAACTTTTGGGTCAAAAGTGACCTTCTTATTAGCGAAAGTTGTTAAATTCCACATGGCCACATTGACTAAAGCCCTAAATCTTAATTACTCATTTTTCTCTCATTTCATTATTTTCCAGAAACGATTTCACCCCTTCTCCCTCATTTCGCGGCTAAGGTTTATAGTTTTCTTCATTGCTGGGTTTCAAAGTGGATATTCGTGGTTATAGGTTAGTAAACTTTTTTCTGATTTTATTGTGTTTACAACCACAAAAATCCACTTTGAAACTCATCACCCAAGAAAGTTATGAAACCTTGGCCGCAAAATGACGGGAAAGTTGTGAAATTCTATCTATCATACTTTGAAATCATAACTGTAATAAAATAAAAAAAAATATTTACTAACCTACAACCATGAATATCCACTTTGAAACTCAGCCCCGAAGAAAGCTACGAAGCCTTAGCTGTGAAATTAGGGGAAAGTTGTGAAATCCTAACTATCATACTTTGAAATTGTAAACATAATAAAATAAGAAAAAATATTTACTAACCTACAAGTGTGAATATCCACTTTGAAACCCAACCACGAAGAAACGTATGAAACCCTAGCCGCGAAATGGTGGAGAACGGGTGAATATATCATTTCTGAAATAATGAAATGAGGGGAGAAATAATTAGGATTTAGGAATTTAGTCTATGTGGCAGTAGAACCTTATTGACATGCAATGTGGCATCCACATGACATTTAACAACTTCTGTTAATAAGAAGGGTACTTTTGATCCAATAGTTTGCCGGGAAGGGTGGTTTTAAGCCGAAATATAGTTTAAGGGTATATATGAGCTATTTTGGATAGTTTAAGGGTATTTTTGACCCTTTGTATTTAGTCTGCGTGGCAGTGGAGTCATATTGGCATGCAATGTGGCATCCATATGGCATCCACGTGGCATTTAACAATTTCCGTTAATAAGAAATGTTTTTTTGACCCAATAGAATGACGAGAAGGGTAGTTTTGAGCCGAAATAAAGTTTAAGGGTATATTTGAGCTATTTCGAATAGTTCAGGGGTATTTTTGAGCCTTTTCCGTTAAGCTAGTTATGTAAAGATTGTTTGTTTGTTCATATAAACAATGTATTTAAGAATCTTTTATTTCTCATCAAGATGATTTGATTCTTTCGTTTGCATCTTCTTGATGCCTTGAAATGAATCTACTTACTTCATCCAAAAAAATGATTTGAGTCGGTCATTTCAGTATTAAACAAGCATGATATTCTTCATTGACCTAACATATTGCTCGAGCTTTTCAAAAATATTGTCTCATCTAAGAGACTAAGACCGTCTCCAACTTTACTCTATTTTAGTCTCTATCTCTATATTTGAAAAGTAAAATAGAGAATGCTCTCTCCAAATACTTTCTATTTTACCCTCTACTCTCCTATTTTTAGAGAGTTGAATAGTAGTTATCCAACTTTGGAGGATTACTATTCATACTCTCTATTTTTGTTTTAGAATATTGTATTATTACATCTATTATTTTGTGATTAACATATTATTTTCATATAAGGATATTAATTAAATCTCTAATATTCATAATTTGTTGAAAATGTAATATAACATTTTAAAAAATATATTATTTAGTATATATTACTTTCATCCCGAATAAATACATTTCAAATATTTTTTTAAAATTTTCATCACTTGAATGAATATAATTTGATATTATTATTAATAAATACTATGAAGAATGCACAAAATTTAATGAAAAAGTGAAATTTAAATAATAAATACAACACATAACGGACTAATTTAAATACAAGATACAGTACAACGCAATACATAACACAATTATTTTAAAGATCACAATAATAATTTAATAATCCGGTAGGTCCTTTCCAAACTTAACAATATTCCCAAAAAAATTGATGAATGATCCAGATAAGTTGTGATTGCGGTTGTGCTTGTTGTTGTTTTCTCCAGTTATTCGTAGTTGTTCTTTAGAAATTTAGAATAAAATATAAATCTATATTATATAAAGAATGTGAAATAAAATAAAATTTTATATTAATGTAAATTATATAGGGTGATTATTTGGAAAAAAGAAATAAAGGATTTAAAAGATAAATAATAATATTATATCGTAGAAGATTCTTTTTAGAAAGTAAAGTAAAGAATTGAGTTAGAGTAGGTTGTCTAAACAAAACAGAGAAATTTATATTTGGTGGAGAGTTAAATAGAAGAGGGTAGGGTTGGAGATCCCAAGGCAAAAAAAAATGGCAGATTCCATACACTCAAAGCTCCAAATAGTGATGTTCCCATGGCTTGCTTTTGGCCATTTAATCCCATTTCTCAGCCTCTCCAATGAACTTGCTAAAAAGGGTCACAGAATCTCATTCTTGTTACCCAAAAATGCTGAAATTAAACTTCAAAAATTCAATCTTTACCCTAATCTCATCACTTTCCACCCACTCAAAATCCCTCATATCCATGGCCTTCCATATGGAGCTGAAACTACAGCTGATGTGCCTAGAGCTTTGGAAACTCTACTAGCAGCAGCTATGGATGAATTGTATGATGAAATCAAATCTTTTCTTCGAAATCTAAAACCCCATTTCGTTTTCTTTGATTTTGCTCATTGGGTTCCTGAAATAGCAACAGAAATTGGGGGTATCAAGACTTTATGTTATAAAACCGTTTGCCCTGCTACATCAGCTTATTCATTGGTTCGATCACCGGAAAAGAGTGTTTTTATGGCATCAACTGCAGCTGAAAAAGTTAGGCCACCACCAGGTTATCCTTCTGCCCTCCTCCCTCTTTTTTTTTCCGGAGAATTTTCGAATATAGCTATAGCTTGAGGCTTAATTAACAATCCTAGTGATAATTTGGATAATTATTAATGCAGCTCGGGTTTGTGAGATTCGCTCTGTGTCAATAATACAACAGTTTCTGAATACAAAGTGAATTAATTTTTCGTGACTACACAGAAACATAATTTGAAAAGTCAATCCTTTACACAGGACCTGTTCTTCCTGAGCCTGAAAAGGGGCCTTTAGGAGAACATCAATTATCGAGTTGTCTCGAGAAATTCGATCTAGGATCAGTAGTTTCTGTACATTTGGGAGGTAATTGAAACTTGAAAAGAGGCAATTTTAAGAACTTGTCTTAGGCCTTGAACTAACTGATCTACCATTTCTTGTTGTTGTTAAACCACCTGAATCCCTTGACATAAGAAAATTGTGTGTGTGATAACAAGTTAACGGGGTTTTAAAATTTGTTTTTGCTCACAAGGTTGAAATGCAGCTATCTTTTGAACCCTTTATATAAAAACCTGACCAGGCAACTGCTTCCAGCTTGTTCGAAAAACAAAGGGGAAACTGTCACGCTTGTAACTTTAGTACCTACATTATGCATCATATAGTGCCACAATTTGCTAGTAAATTTGCAACTTTATTATGCTCTCTAAAAATGTGTTCAATTGGTGGATCTCCAGGTTACCCTTCTACTACTGTGGTGTTGCACGAACACGAAGCTAAGTTGCTAGAGTTTCTGTTTCAAGAATATGGCAAGGGAGTGACAATATATGAACGGTTGACAAAGGGAATGACGCTATGCGATGCAATAGCTTTGAAAACATGTCGAGAGATTGAAGGAACATTTGGTGACTACATCGCCACACAATTTAAAAAACCAGTCCTTTACACTGGACCTGTTCTTCCTGATCCTGAAAAGGGGCCTTTAGCAGAACATGGATTATCGAATTGGCTCGAGAAGTTCGAACCAGGATCGGTGGTGTTCTGTGCATTTGGAAGCCAATTGATTCTCGAAAAGAAGCAGTTTCAAGAACTTGTTTTAGGCCTTGAACTAACAGGTCTGCCATTTCTGGTAGTTCTTAAGCCACCTGAAGGAACAAATTCAGT</genome_strand>
        <mrna_strand>CTCAAATCAAACTTCAAAATCTCAATCTTTACCCTAATCTCATCACTTTCCACACACTCAAAATCCCTCATATCCATGGCCTTCCATATGGAGCTGAAACTACAGCTGATGTGCCTAGATCTTTGGAAACTCTACTAGCAACAGCTATGGATGAATTGTATGATGAAATCAAATCTTTTCTTCAAAACCTGAAACCCCATTTCGTTTTCTTTGATTTTGCTCATTGGGTTACTGAAATAGCATTAGAAATTGGGGATATCAACACTATTTGTTATAAACTTACTTCCCCTGCTACATCAGCTATTTCATTGATTCGATCTCCGGAAAAGAGTGTTTTCATGGCATCAACTGCAGCTGAAAAAGTTAGGCCACCACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCCTTCTACTACTGTGGTGTTGCACGAACACGAAGCTAAGTTGCTAGAGTTTCTGTTTCAAGAATATGGCAAGGGAGTGACAATATATGAACGGTTGACAAAGGGAATGACGCTATGCGATGCAATAGCTTTGAAAACATGTCGAGAGATTGAAGGAACATTTGGTGACTACATCGCCACACAATTTAAAAAACCAGTCCTTTACACTGGACCTGTTCTTCCTGATCCTGAAAAGGGGCCTTTAGCAGAACATGGATTATCGAATTGGCTCGAGAAGTTTGAACCAGGATCGGTGGTGTTCTGTGCATTTGGAAGCCAATTGATTCTCGAAAAGAAGCAGTTTCAAGAACTTGTTTTAGGCCTTGAACTAACAGGTCTGCCATTTCTGGTAGTTCTTAAGCCACCTGAAGGAACAAATTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322433" ref_strand="+" ref_description="SGN-E322433 [cTOB-26-E13]">
      <seq>ttcaatagggttcttcttcgtttaacatcgttgtctctaccaaacaatctaatgggtgacaagaagaaggctggcgctctattcgtgagacttgtttcaactgctggaactggatttttctatgtgaagaagaagaccaaaacacttataacaaatcagacgaagcttgaatttagaaagtttgatcctcgtgtgaattgtcatgttctgttcaaggaagaaaaaatgaagtgatgcaaactccaaacatgggccaaatcttcttttaactgttagctttcatttttgcagcagccagtagtgaaattagacaataggacttttggctgacttgttctacaacaacagtttgtttttatttatgcaatactctgaattcgttcgtgatcatgttgaatgaaacatagttgttgatcatatgactgcaaagaaaagatttgatttgatcatacgatttcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="19601" stop="21899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19901" g_stop="19930" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19931" i_stop="21167" i_length="1237">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21168" g_stop="21599" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="462" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E322433" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19901" e_stop="19930"/>
          <exon e_start="21168" e_stop="21599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATAGGGTTCTTCTTCGTTTAACATCGGTGAGTTTTCTCCTATGAATCCTCTTGTTTTCGTTTATAGTTTGATTTGAATTCTCCTTTTTGTGCTTGATATTTGCTTGTATCTTCCCCCAATTTTGAAATTGATGTGCGATTCTAGCGTGTTAGATACATTTATTCGTCTTAATTGAGATTCATTCACCTGGAATGTGTGAATTCGGTTTGTTTTTTGGTGCTTTCTAGTTTCTCCGGTAGCTGATTCGATATAGTAAGATTTAGTGGTTTAGTGTGTGAAGAAAATGTAAACTTTTGTGGTGAGAATTTGGTGGTGGATATAGCTGTTGTACGTGCTGCTGTAGCGGCGGTTTTCTTAGTGTGTTTCTCAAAGATGAAGAAGAGCAACTAAAACTTGAAAACTATGGAGTAAACTCTTAACAGTAGAACTATAATATCTGCAGATTGCTTGTATCGTAAAGAAAAATGTAATCTTTAGCATTGTGTAGTTGAAATAATATTCACTGTTAAACAAGGTACCTCTTAAGTTCGAGCCTTGAGTATGAGGTTGCCCTTTTCCCGAGTGAAGTAATGAGTTTGAGGATGGGTATGTTAACATGTGAGGAGCTTTCGCCGCTAGCTGTTTGTGGAAATGCTAAAACAAACCGGGCTCTTTCTATATATACTACAATGATTGTACATCTTTGTGATTGTTTACTATAATGCTGGTGTTGTTTTGTTATATTGTGTGTGTTTTTATATGTGGTCATGGGAGTGAAGAATTGAAGAATTTCTCAAACGTGTTTCTGTGCATGTTTGGATATACTGTCCATGTGTTTTGGAATGAAAAACGATAATTGACTAAGCTGTAAAATTTCTTGGTCATCAATGTGATAAGTAGCTTTATTTGTGTTTTTGCATAAACCTAGTATTTAAGTGGTGAAGGGTAAAAGGGTGTGCCTGTTATGCCGAGTTCCAAAGGTTTATGGTAGGTCCTAAGGGTTGGCATTAGACAGATTTTTCTGTGAGAGGGTTCATGTATTCGACCTTAACTTGTTTGGGATAGAGGCATAGTTGTTAGTTGTTATTGGTGTTAGTATCAAGTATCAACATTTGAGTAGCTCCTCTAGCCACTGAGCCTAGTGCCTGTCCAACCTAAACCATTGAGAACGACCATCTCCAAACTGAAGATTCTTTATTAGTGTAAACTCATCTGTGATAATCGTTAGTTTTTCAGCCTTCAGCTCTATATATCTGGAAAACTAAAACTTTATTCTCTTTTCAGTTGTCTCTACCAAACAATCTAATGGGTGACAAGAAGAAGGCTGGCGCTCTATTCGTGAGACTTGTTTCAACTGCTGGAACTGGATTTTTCTATGTGAAGAAGAAGACCAAAACACTTATAACAAATCAGACGAAGCTTGAATTTAGAAAGTTTGATCCTCGTGTGAATTGTCATGTTCTGTTCAAGGAAGAAAAAATGAAGTGATGCAAACTCCAAACATGGGCCAAATCTTCTTTTAACTGTTAGCTTTCATTTTTGCAGCAGCCAGTAGTGAAATTAGACAATAGGACTTTTGGCTGACTTGTTCTACAACAACAGTTTGTTTTTATTTATGCAATACTCTGAATTCGTTCGTGATCATGTTGAATGAAACATAGTTGTTGATCATATGACTGCAAAGAAAAGATTTGATTTGATCATACGATTTCAAAG</genome_strand>
        <mrna_strand>TTCAATAGGGTTCTTCTTCGTTTAACATCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTCTACCAAACAATCTAATGGGTGACAAGAAGAAGGCTGGCGCTCTATTCGTGAGACTTGTTTCAACTGCTGGAACTGGATTTTTCTATGTGAAGAAGAAGACCAAAACACTTATAACAAATCAGACGAAGCTTGAATTTAGAAAGTTTGATCCTCGTGTGAATTGTCATGTTCTGTTCAAGGAAGAAAAAATGAAGTGATGCAAACTCCAAACATGGGCCAAATCTTCTTTTAACTGTTAGCTTTCATTTTTGCAGCAGCCAGTAGTGAAATTAGACAATAGGACTTTTGGCTGACTTGTTCTACAACAACAGTTTGTTTTTATTTATGCAATACTCTGAATTCGTTCGTGATCATGTTGAATGAAACATAGTTGTTGATCATATGACTGCAAAGAAAAGATTTGATTTGATCATACGATTTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322434" ref_strand="+" ref_description="SGN-E322434 [cTOB-26-E15]">
      <seq>ttccatagggttcttcttcgtttaacatcgttgtctctaccaaacaatctaatgggtgacaagaagaaggctggcgctctattcgtgagacttgtttcaactgctggaactggatttttctatgtgaagaagaagaccaaaacacttataacaaatcagacgaagcttgaatttagaaagtttgatcctcgtgtgaattgtcatgttctgttcaaggaagaaaaaatgaagtgatgcaaactccaaacatgggccaaatcttcttttaactgttagctttcatttttgcagcagccagtagtgaaattagacaataggacttttggctgacttgttctacaacaacagtttgtttttatttatgcaatactctgaattcgttcgtgatcatgttgaatgaaacatagttgttgatcatatgactgcaaagaaaagatttgatttgatcatacgatttcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="19601" stop="21899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19901" g_stop="19930" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19931" i_stop="21167" i_length="1237">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21168" g_stop="21599" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="462" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E322434" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19901" e_stop="19930"/>
          <exon e_start="21168" e_stop="21599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATAGGGTTCTTCTTCGTTTAACATCGGTGAGTTTTCTCCTATGAATCCTCTTGTTTTCGTTTATAGTTTGATTTGAATTCTCCTTTTTGTGCTTGATATTTGCTTGTATCTTCCCCCAATTTTGAAATTGATGTGCGATTCTAGCGTGTTAGATACATTTATTCGTCTTAATTGAGATTCATTCACCTGGAATGTGTGAATTCGGTTTGTTTTTTGGTGCTTTCTAGTTTCTCCGGTAGCTGATTCGATATAGTAAGATTTAGTGGTTTAGTGTGTGAAGAAAATGTAAACTTTTGTGGTGAGAATTTGGTGGTGGATATAGCTGTTGTACGTGCTGCTGTAGCGGCGGTTTTCTTAGTGTGTTTCTCAAAGATGAAGAAGAGCAACTAAAACTTGAAAACTATGGAGTAAACTCTTAACAGTAGAACTATAATATCTGCAGATTGCTTGTATCGTAAAGAAAAATGTAATCTTTAGCATTGTGTAGTTGAAATAATATTCACTGTTAAACAAGGTACCTCTTAAGTTCGAGCCTTGAGTATGAGGTTGCCCTTTTCCCGAGTGAAGTAATGAGTTTGAGGATGGGTATGTTAACATGTGAGGAGCTTTCGCCGCTAGCTGTTTGTGGAAATGCTAAAACAAACCGGGCTCTTTCTATATATACTACAATGATTGTACATCTTTGTGATTGTTTACTATAATGCTGGTGTTGTTTTGTTATATTGTGTGTGTTTTTATATGTGGTCATGGGAGTGAAGAATTGAAGAATTTCTCAAACGTGTTTCTGTGCATGTTTGGATATACTGTCCATGTGTTTTGGAATGAAAAACGATAATTGACTAAGCTGTAAAATTTCTTGGTCATCAATGTGATAAGTAGCTTTATTTGTGTTTTTGCATAAACCTAGTATTTAAGTGGTGAAGGGTAAAAGGGTGTGCCTGTTATGCCGAGTTCCAAAGGTTTATGGTAGGTCCTAAGGGTTGGCATTAGACAGATTTTTCTGTGAGAGGGTTCATGTATTCGACCTTAACTTGTTTGGGATAGAGGCATAGTTGTTAGTTGTTATTGGTGTTAGTATCAAGTATCAACATTTGAGTAGCTCCTCTAGCCACTGAGCCTAGTGCCTGTCCAACCTAAACCATTGAGAACGACCATCTCCAAACTGAAGATTCTTTATTAGTGTAAACTCATCTGTGATAATCGTTAGTTTTTCAGCCTTCAGCTCTATATATCTGGAAAACTAAAACTTTATTCTCTTTTCAGTTGTCTCTACCAAACAATCTAATGGGTGACAAGAAGAAGGCTGGCGCTCTATTCGTGAGACTTGTTTCAACTGCTGGAACTGGATTTTTCTATGTGAAGAAGAAGACCAAAACACTTATAACAAATCAGACGAAGCTTGAATTTAGAAAGTTTGATCCTCGTGTGAATTGTCATGTTCTGTTCAAGGAAGAAAAAATGAAGTGATGCAAACTCCAAACATGGGCCAAATCTTCTTTTAACTGTTAGCTTTCATTTTTGCAGCAGCCAGTAGTGAAATTAGACAATAGGACTTTTGGCTGACTTGTTCTACAACAACAGTTTGTTTTTATTTATGCAATACTCTGAATTCGTTCGTGATCATGTTGAATGAAACATAGTTGTTGATCATATGACTGCAAAGAAAAGATTTGATTTGATCATACGATTTCAAAG</genome_strand>
        <mrna_strand>TTCCATAGGGTTCTTCTTCGTTTAACATCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTCTACCAAACAATCTAATGGGTGACAAGAAGAAGGCTGGCGCTCTATTCGTGAGACTTGTTTCAACTGCTGGAACTGGATTTTTCTATGTGAAGAAGAAGACCAAAACACTTATAACAAATCAGACGAAGCTTGAATTTAGAAAGTTTGATCCTCGTGTGAATTGTCATGTTCTGTTCAAGGAAGAAAAAATGAAGTGATGCAAACTCCAAACATGGGCCAAATCTTCTTTTAACTGTTAGCTTTCATTTTTGCAGCAGCCAGTAGTGAAATTAGACAATAGGACTTTTGGCTGACTTGTTCTACAACAACAGTTTGTTTTTATTTATGCAATACTCTGAATTCGTTCGTGATCATGTTGAATGAAACATAGTTGTTGATCATATGACTGCAAAGAAAAGATTTGATTTGATCATACGATTTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308584" ref_strand="+" ref_description="SGN-E308584 [cLEY-21-E16]">
      <seq>ttcaatagggttcttcttcgtttaacatcggggtctctaccaaacaatctaatgggtgacaagaagaaggctggcgctctattcgtgagacttgtttcaactgctggaactggatttttctatgtgaagaagaagaccaaaacacttataacaaatcagacgaagcttgaatttagaaagtttgatcctcgtgtgaattgtcatgttctgttcaaggaagaaaaaatgaagtgatgcaaactccaaacatgggccaaatcttcttttaactgttagctttcatttttgcagcagccagtagtgaaattagacaataggacttttggctgacttgttctacaacaacagtttgtttttatttatgcaatactctgaattcgttcgtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="19601" stop="21824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19901" g_stop="19930" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19931" i_stop="21167" i_length="1237">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21168" g_stop="21523" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="386" r_length="356" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="417"/>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E308584" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19901" e_stop="19930"/>
          <exon e_start="21168" e_stop="21523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATAGGGTTCTTCTTCGTTTAACATCGGTGAGTTTTCTCCTATGAATCCTCTTGTTTTCGTTTATAGTTTGATTTGAATTCTCCTTTTTGTGCTTGATATTTGCTTGTATCTTCCCCCAATTTTGAAATTGATGTGCGATTCTAGCGTGTTAGATACATTTATTCGTCTTAATTGAGATTCATTCACCTGGAATGTGTGAATTCGGTTTGTTTTTTGGTGCTTTCTAGTTTCTCCGGTAGCTGATTCGATATAGTAAGATTTAGTGGTTTAGTGTGTGAAGAAAATGTAAACTTTTGTGGTGAGAATTTGGTGGTGGATATAGCTGTTGTACGTGCTGCTGTAGCGGCGGTTTTCTTAGTGTGTTTCTCAAAGATGAAGAAGAGCAACTAAAACTTGAAAACTATGGAGTAAACTCTTAACAGTAGAACTATAATATCTGCAGATTGCTTGTATCGTAAAGAAAAATGTAATCTTTAGCATTGTGTAGTTGAAATAATATTCACTGTTAAACAAGGTACCTCTTAAGTTCGAGCCTTGAGTATGAGGTTGCCCTTTTCCCGAGTGAAGTAATGAGTTTGAGGATGGGTATGTTAACATGTGAGGAGCTTTCGCCGCTAGCTGTTTGTGGAAATGCTAAAACAAACCGGGCTCTTTCTATATATACTACAATGATTGTACATCTTTGTGATTGTTTACTATAATGCTGGTGTTGTTTTGTTATATTGTGTGTGTTTTTATATGTGGTCATGGGAGTGAAGAATTGAAGAATTTCTCAAACGTGTTTCTGTGCATGTTTGGATATACTGTCCATGTGTTTTGGAATGAAAAACGATAATTGACTAAGCTGTAAAATTTCTTGGTCATCAATGTGATAAGTAGCTTTATTTGTGTTTTTGCATAAACCTAGTATTTAAGTGGTGAAGGGTAAAAGGGTGTGCCTGTTATGCCGAGTTCCAAAGGTTTATGGTAGGTCCTAAGGGTTGGCATTAGACAGATTTTTCTGTGAGAGGGTTCATGTATTCGACCTTAACTTGTTTGGGATAGAGGCATAGTTGTTAGTTGTTATTGGTGTTAGTATCAAGTATCAACATTTGAGTAGCTCCTCTAGCCACTGAGCCTAGTGCCTGTCCAACCTAAACCATTGAGAACGACCATCTCCAAACTGAAGATTCTTTATTAGTGTAAACTCATCTGTGATAATCGTTAGTTTTTCAGCCTTCAGCTCTATATATCTGGAAAACTAAAACTTTATTCTCTTTTCAGTTGTCTCTACCAAACAATCTAATGGGTGACAAGAAGAAGGCTGGCGCTCTATTCGTGAGACTTGTTTCAACTGCTGGAACTGGATTTTTCTATGTGAAGAAGAAGACCAAAACACTTATAACAAATCAGACGAAGCTTGAATTTAGAAAGTTTGATCCTCGTGTGAATTGTCATGTTCTGTTCAAGGAAGAAAAAATGAAGTGATGCAAACTCCAAACATGGGCCAAATCTTCTTTTAACTGTTAGCTTTCATTTTTGCAGCAGCCAGTAGTGAAATTAGACAATAGGACTTTTGGCTGACTTGTTCTACAACAACAGTTTGTTTTTATTTATGCAATACTCTGAATTCGTTCGTG</genome_strand>
        <mrna_strand>TTCAATAGGGTTCTTCTTCGTTTAACATCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCTCTACCAAACAATCTAATGGGTGACAAGAAGAAGGCTGGCGCTCTATTCGTGAGACTTGTTTCAACTGCTGGAACTGGATTTTTCTATGTGAAGAAGAAGACCAAAACACTTATAACAAATCAGACGAAGCTTGAATTTAGAAAGTTTGATCCTCGTGTGAATTGTCATGTTCTGTTCAAGGAAGAAAAAATGAAGTGATGCAAACTCCAAACATGGGCCAAATCTTCTTTTAACTGTTAGCTTTCATTTTTGCAGCAGCCAGTAGTGAAATTAGACAATAGGACTTTTGGCTGACTTGTTCTACAACAACAGTTTGTTTTTATTTATGCAATACTCTGAATTCGTTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540855" ref_strand="+" ref_description="SGN-E540855 [TUS-61-F13]">
      <seq>gtgaattgtcatgttctgttcaaggaagaaaaaatgaagtgatgcaaactccaaacatgggccaaatcttcttttaactgttagctttcatttttgcagcagccagtagtgaaattagacaataggacttttggctgacttgttctacaacaacagtttgtttttatttatgcaatactctgaattcgttcgtgatcatgttgaatgaaacatagttgttgatcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="21030" stop="21856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21330" g_stop="21573" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E540855" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21330" e_stop="21573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTGTCATGTTCTGTTCAAGGAAGAAAAAATGAAGTGATGCAAACTCCAAACATGGGCCAAATCTTCTTTTAACTGTTAGCTTTCATTTTTGCAGCAGCCAGTAGTGAAATTAGACAATAGGACTTTTGGCTGACTTGTTCTACAACAACAGTTTGTTTTTATTTATGCAATACTCTGAATTCGTTCGTGATCATGTTGAATGAAACATAGTTGTTGATCATATGACTGCAAAGAAAAGA</genome_strand>
        <mrna_strand>GTGAATTGTCATGTTCTGTTCAAGGAAGAAAAAATGAAGTGATGCAAACTCCAAACATGGGCCAAATCTTCTTTTAACTGTTAGCTTTCATTTTTGCAGCAGCCAGTAGTGAAATTAGACAATAGGACTTTTGGCTGACTTGTTCTACAACAACAGTTTGTTTTTATTTATGCAATACTCTGAATTCGTTCGTGATCATGTTGAATGAAACATAGTTGTTGATCAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548453" ref_strand="+" ref_description="SGN-E548453 [TUS-61-F13](-)">
      <seq>gtgaattgtcatgttctgttcaaggaagaaaaaatgaagtgatgcaaactccaaacatgggccaaatcttcttttaactgttagctttcatttttgcagcagccagtagtgaaattagacaataggacttttggctgacttgttctacaacaacagtttgtttttatttatgcaatactctgaattcgttcgtgatcatgttgaatgaaacatagttgttgatcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="21030" stop="21856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21330" g_stop="21573" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E548453" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21330" e_stop="21573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTGTCATGTTCTGTTCAAGGAAGAAAAAATGAAGTGATGCAAACTCCAAACATGGGCCAAATCTTCTTTTAACTGTTAGCTTTCATTTTTGCAGCAGCCAGTAGTGAAATTAGACAATAGGACTTTTGGCTGACTTGTTCTACAACAACAGTTTGTTTTTATTTATGCAATACTCTGAATTCGTTCGTGATCATGTTGAATGAAACATAGTTGTTGATCATATGACTGCAAAGAAAAGA</genome_strand>
        <mrna_strand>GTGAATTGTCATGTTCTGTTCAAGGAAGAAAAAATGAAGTGATGCAAACTCCAAACATGGGCCAAATCTTCTTTTAACTGTTAGCTTTCATTTTTGCAGCAGCCAGTAGTGAAATTAGACAATAGGACTTTTGGCTGACTTGTTCTACAACAACAGTTTGTTTTTATTTATGCAATACTCTGAATTCGTTCGTGATCATGTTGAATGAAACATAGTTGTTGATCAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289895" ref_strand="+" ref_description="SGN-E289895 [cLET-9-G4]">
      <seq>atgttctgttcaaggaagaaaaaatgaagtgatgcaaactccaaacatgggccaaatcttcttttaactgttagctttcatttttgcagcagccagtagtgaaattagacaataggacttttggctgacttgttctacaacaacagtttgtttttatttatgcaatactctgaattcgttcgtgatcatgttgaatgaaacatagttgttgatcnnaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="21040" stop="21853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21340" g_stop="21573" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E289895" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21340" e_stop="21573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTCTGTTCAAGGAAGAAAAAATGAAGTGATGCAAACTCCAAACATGGGCCAAATCTTCTTTTAACTGTTAGCTTTCATTTTTGCAGCAGCCAGTAGTGAAATTAGACAATAGGACTTTTGGCTGACTTGTTCTACAACAACAGTTTGTTTTTATTTATGCAATACTCTGAATTCGTTCGTGATCATGTTGAATGAAACATAGTTGTTGATCATATGACTGCAAAGAAAAGA</genome_strand>
        <mrna_strand>ATGTTCTGTTCAAGGAAGAAAAAATGAAGTGATGCAAACTCCAAACATGGGCCAAATCTTCTTTTAACTGTTAGCTTTCATTTTTGCAGCAGCCAGTAGTGAAATTAGACAATAGGACTTTTGGCTGACTTGTTCTACAACAACAGTTTGTTTTTATTTATGCAATACTCTGAATTCGTTCGTGATCATGTTGAATGAAACATAGTTGTTGATCNNAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218467" ref_strand="+" ref_description="SGN-E218467 [cLEL-18-J14](-)">
      <seq>tatcagctagctattgcaaagaagcaaactaaccaaccagaagaaacagaggaggacgaagaaagcgctgatcccaacccagctccaagcaaaaatccaactctttctcatgaaaagacagactttcctcaaggtactcctcaacgagtatcctttccccttggcgccaaacgtccaagatgatgtcttatgcttgatcagctttagtcacaagagcctttgtaaccgcctgcctatgtatttaatcgaaggcattgtatacttgttgtttgaacatgaagtatgaaactttaagatccttctgtaacacagtcagtattagtttaaatgctctccttccagtatttattagacacaattagcagagagttgagctgtaaaatgaagaattaccttggcattatcaatagttttccaacatattcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="22425" stop="21400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22125" g_stop="21701" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="441"/>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E218467" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22125" e_stop="21701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAGCTAGCTATTGCAAAGAAGCAAACTAACCAACCAGAAGAAACAGAGGAGGACGAAGAAAGCGCTGATCCCAACCCAGCTCCAAGCAAAAATCCAACTCTTTCTCATGAAAAGACAGACTTACCTCAAGGTACTCCTCAACGAGTATCCTTTCCCCTTGGCGCCAAACGTCCAAGATGATGTCTTATGCTTGATCAGCTTTAGTCACAAGAGCCTTTGTAACCGCCTGCCTATGTATTTAATCGAAGGCATTGTATACTTGTTGTTTGAACATGAAGTATGAAACTTTAAGATCCTTCTGTAACACAGTCAGTATTAGTTTAAATGCTCTCCTTCCAGTATTTATTAGACACAATTAGCAGAGAGTTGAGCTGTAAAATGAAGAATTACCTTGGCATTATCAATAGTTTTCCAACATATTC</genome_strand>
        <mrna_strand>TATCAGCTAGCTATTGCAAAGAAGCAAACTAACCAACCAGAAGAAACAGAGGAGGACGAAGAAAGCGCTGATCCCAACCCAGCTCCAAGCAAAAATCCAACTCTTTCTCATGAAAAGACAGACTTTCCTCAAGGTACTCCTCAACGAGTATCCTTTCCCCTTGGCGCCAAACGTCCAAGATGATGTCTTATGCTTGATCAGCTTTAGTCACAAGAGCCTTTGTAACCGCCTGCCTATGTATTTAATCGAAGGCATTGTATACTTGTTGTTTGAACATGAAGTATGAAACTTTAAGATCCTTCTGTAACACAGTCAGTATTAGTTTAAATGCTCTCCTTCCAGTATTTATTAGACACAATTAGCAGAGAGTTGAGCTGTAAAATGAAGAATTACCTTGGCATTATCAATAGTTTTCCAACATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218610" ref_strand="+" ref_description="SGN-E218610 [cLEL-18-J14](-)">
      <seq>atcagctagctattgcaaagaagcaaactaaccatccagaagaaacagaggaggacgaagaaagcgctgatcccaacccagctccaagcaaaaatccaactctttctcatgaaaagacagacttacctcaaggtactcctcaacgagtatcctttccccttggcgccaaacgtccaagatgatgtcttatgcttgatcagctttagtcacaagagcctttgtaaccgcctgcctatgtatttaatcgaaggcattgtatacttgttgtttgaacatgaagtatgaaactttaagatccttctgtaacacagtcagtattagtttaaatgctctccttccagtatttattagacacaattagcagagagttgagctgtaaaatgaagaattaccttggcattatcaatagttttccaacatattcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="22424" stop="21400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22124" g_stop="21701" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="440"/>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E218610" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22124" e_stop="21701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGCTAGCTATTGCAAAGAAGCAAACTAACCAACCAGAAGAAACAGAGGAGGACGAAGAAAGCGCTGATCCCAACCCAGCTCCAAGCAAAAATCCAACTCTTTCTCATGAAAAGACAGACTTACCTCAAGGTACTCCTCAACGAGTATCCTTTCCCCTTGGCGCCAAACGTCCAAGATGATGTCTTATGCTTGATCAGCTTTAGTCACAAGAGCCTTTGTAACCGCCTGCCTATGTATTTAATCGAAGGCATTGTATACTTGTTGTTTGAACATGAAGTATGAAACTTTAAGATCCTTCTGTAACACAGTCAGTATTAGTTTAAATGCTCTCCTTCCAGTATTTATTAGACACAATTAGCAGAGAGTTGAGCTGTAAAATGAAGAATTACCTTGGCATTATCAATAGTTTTCCAACATATTC</genome_strand>
        <mrna_strand>ATCAGCTAGCTATTGCAAAGAAGCAAACTAACCATCCAGAAGAAACAGAGGAGGACGAAGAAAGCGCTGATCCCAACCCAGCTCCAAGCAAAAATCCAACTCTTTCTCATGAAAAGACAGACTTACCTCAAGGTACTCCTCAACGAGTATCCTTTCCCCTTGGCGCCAAACGTCCAAGATGATGTCTTATGCTTGATCAGCTTTAGTCACAAGAGCCTTTGTAACCGCCTGCCTATGTATTTAATCGAAGGCATTGTATACTTGTTGTTTGAACATGAAGTATGAAACTTTAAGATCCTTCTGTAACACAGTCAGTATTAGTTTAAATGCTCTCCTTCCAGTATTTATTAGACACAATTAGCAGAGAGTTGAGCTGTAAAATGAAGAATTACCTTGGCATTATCAATAGTTTTCCAACATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219331" ref_strand="+" ref_description="SGN-E219331 [cLEL-11-O2](-)">
      <seq>atgtatttaatcgaaggcattgtatacttgttgtttgaacatgaagtatgaaactttaagatccttctgtaacacagtcagtattagtttaaatgctctccttccagtatttattagacacaatttagcagagagttgagctgtaaaatgaagaattaccttggcattatcaatagttttccaacatattcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="22190" stop="21400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21890" g_stop="21701" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="192" polyA_stop="207"/>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E219331" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>190</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21890" e_stop="21701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTATTTAATCGAAGGCATTGTATACTTGTTGTTTGAACATGAAGTATGAAACTTTAAGATCCTTCTGTAACACAGTCAGTATTAGTTTAAATGCTCTCCTTCCAGTATTTATTAGACACAA-TTAGCAGAGAGTTGAGCTGTAAAATGAAGAATTACCTTGGCATTATCAATAGTTTTCCAACATATTC</genome_strand>
        <mrna_strand>ATGTATTTAATCGAAGGCATTGTATACTTGTTGTTTGAACATGAAGTATGAAACTTTAAGATCCTTCTGTAACACAGTCAGTATTAGTTTAAATGCTCTCCTTCCAGTATTTATTAGACACAATTTAGCAGAGAGTTGAGCTGTAAAATGAAGAATTACCTTGGCATTATCAATAGTTTTCCAACATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314195" ref_strand="+" ref_description="SGN-E314195 [cTOA-21-L16]">
      <seq>cttcgtttaatctttgcctattgctcgaattgtggtgaatcttcggttgaaccttgaaagaaatggctgaaggtggagaagaggacttgccaagggatgcaaagattgtcaaaacgctgctaaaatcaatgggtgttgatgactacgagcctcgagttgtgcatcaatttttggaattgtggtatcgctatgttgttgatgtactgacggatgctcaagtctactcagagcatgcagggaaggcttccattgactctgatgacatcaagcttgccattcagtcaaaagttaatttcagcttctcacaacccccgccgcgtgaggtcctactggagttggctaggaacagaaacaagattccattgccgaaatcaattgctgggtctggagtaccactccctcctgaacaagatacactgatcaaccctaactatcagctagctattgcaaagaagcaaactaaccaaccagaagaaacagaggaggacgaagaaagcgctgatcccaacccagctccaagcaaaaatccaactctttctcatgaaaagacagacttacctcaaggtactcctcaacgagtatcctttccccttggcgccaaacgtccaagatgatgtcttatgcttgatcagctttagtcacaagagcctttgtaaccgcctgcctatgtatttaatcgaaggcattgtatacttgntgtttgaacatgaagtatgaaactttaagatccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="28600" stop="21524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28300" g_stop="28256" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28255" i_stop="26977" i_length="1279">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26976" g_stop="26699" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="323" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26698" i_stop="22234" i_length="4465">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22233" g_stop="21824" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="733" r_length="410" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E314195" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28300" e_stop="28256"/>
          <exon e_start="26976" e_stop="26699"/>
          <exon e_start="22233" e_stop="21824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGTTTAATCTTTGCCTATTGCTCGAATTGTGGTGAATCTTCGGTAAGTATTCGTATTTGAGGTTCCTTTTTTAGTACTGAATTTGGGGGATTTGTAATTTTGAGTTAGGGTTAAGCTGGCCCTGTATGGAGGTGGAGGTTTATGGTCTTGAATCTTTTGTACTTGAAGGAGGGTTAAAAGGGGTTCAAGACCACCCATTTTTATGGTAATTGGGTGTATTTTGCCCTTTTTTTGAGTTCTATAGCTTCATTAACATTGTTAACTGCTTCTTATGTGATAAAATGGCTCAAATTAACCCTGTGATGATGTACTATTTGGCCTCTTAGTATTGGGTTTGAAGTTATTTGTTTTTTTAGTGTTTTTAGTATGTGATTCTAATAATGGAATTTGTGGAGTTGAAATTGGTTGAATTATACTAGTAGTTTTATTCGTTTGCTTGCTGATATGGTCTATTTTTACCTGTCATGATGTGCTATTCGGTCTTTAAATATGGGATGGAAGTCATAACTTATTAAGTATTTTTACTGTTTCATTCTAATAATTGAATTGTGCGGAGTTGAAATTCGTTGACTTAAAGTAGCACCTTTATTCGATTGCTTGCTGGTATGGACTCTTGGTGTTTTTTTTTCTTGTCCCAGTTATATGGTGTTTTATTTTCTATTAGTTAGTAATAAGAAGCTGAAAAGATTGCTTATTAGCAAGGGAAATGTATGATAGTTTGTGAGGAATGTGTGTTATAATTCTTGTTCAATGCTTCCTTTTTTGAAACTAGAAAATAATTGTAATACTTGTCTCTGATTTTCATTCCCTAGCTCTCCCGTAATGGTTTTATATCTGAAATTTAAGGGTATCCAATGTTGTTGTGTTCCTCCATCTAATAAATTTCGAAACTATTATGGTTCCATTATCACTGCTCTTGAAGTGGAGAAAGGGATCTAATTAATTCCATTTAATGTACTTATTAAACTGTGTTTGAATGTTTCTTTGACCTCAACAGGATTCAATTAGACAGATGGAATTTGGTATTGTTTTATATTTTTAGTTTTATTTTTGTTTTTTCCTTTTCATAGTGCTCTTACTTTATACCTCTAAATATTTTCCGGATTGCTCTTTTGCGTGTATGGAGAAAAGCTGTTTGATGAATGTCTTTCTACATAAGCTCTCACTCTGATGCTTTTCAGAATGTTTGCTATTATGTTTTACAATTTCATGATTTCAACTTGTAGTGCATCACATCTCCATCTCTATCTGGTTTCTGCAACTCTATATTGACACTACTGACGTGTATGAAATGATGCTGATGGTTAATGTTTCTTTTTAGGTTGAACCTTGAAAGAAATGGCTGAAGGTGGAGAAGAGGACTTGCCAAGGGATGCAAAGATTGTCAAAACGCTGCTAAAATCAATGGGTGTTGATGACTACGAGCCTCGAGTTGTGCATCAATTTTTGGAATTGTGGTATCGCTATGTTGTTGATGTACTGACGGATGCTCAAGTCTACTCAGAGCATGCAGGGAAGGCTTCCATTGACTCTGATGACATCAAGCTTGCCATTCAGTCAAAAGTTAATTTCAGCTTCTCACAACCCCCGCCGCGTGAGGTACCAAGTCTTTACTAAATCTTTCATTTTTGTGCTGGTGTTTCATTCTTCCAAGAATGAACTCATATCTTTCTTAGAGACCTTTTAGGTGTATGATGAAACTGATAACCTTTAGCCCTCTCTTGTCTAAGAAAGATAAGTAAAATGGAGTTTCTGAATCAAAGAATTATATGATGTAACTAAATTTTTTGTCTTGGAGTCTTAGGTTGTTCTCTTGTAACGTGTTTCAGAACTTCGGTTGTCATTCGACATAATTATATATTTTAAAGTTATAACTGAAAACAGTGAAAAGGTATCAAACTAATAGGTCATAGTTTGGAAAGTTATCTATTTCAAAATAAAAAAATACATGTCATAGTCTGGTGCTATCATATGTGGTTTATTACCGTGACTGAGAAAAGTTGAACAGCAGGTATTGGTGGCTGAATGCTAGGGTAGTGGTATAGAGATTTTCAGCCTTGTGCAGAACAGAAGATGCTGAAGGTTCTACAGGAATTTTTTTAGGTTGTGAATGGGTTCTGGCATTTTGATTACTTAACAGTTGCTGTTTGTTAGTTGACTAATTCAGAGTATCACAGGATTGGTTAAAAAGTAAAATAAACACTTTTAATCTGCATAGAATTTTCTAGAGTAAAGTCACCAGGTTAAAAATTATCTGTATAGAATTTCCTAGAATAAAGTTACCAAGTTCAAAAAATCTGCATAAGATTTCCTAGACTAATCACACCATTAGAAGGCTGCATAGACACTTCAAAATAAGCAACGACAACTTGACCAATACTGATTCAATCCGAGCTTTTCTTTTTTCTTTTTTTAATTTAAAGGTCCATTGATCATGGAGGTGCAAAAAGTTACAATTTGAGCTTGGCATCCCAAACTTTGTACATGATCATAGAGATGAGACTAACACTCTATTCCTACGCAAAACAAGTGACAATTATTTGAGAGATCAAGGAGGATCATATATGATGTGGCAAGTTTTGCCGGTTTATTCTTAAATGTTGGTAAGCTCCATTTATCCGTATGGACCAGACCTCTTATGTTACTGGGAAGTTCACAGAAGAGATTGAAGGTCTTCACTCCTGCAACTTTATGACTTAGCACTGCTAGTCTGTCCGCCGGTCTATTAGCTTCTCGAAAATAATGGTTGATATTGAAGTCATGATCTTCAATCATCTTCAGGATCTCTTTTATTTGGTTGTAGATTTTCGAAGGAGGTTTCCACTCTTTTCTGGAGCACTTGGCTAGTATCAGGGAATCTGTTTCACCTATCGCCATATCAAAACCTTTGCCAGCACACCATTTCAGTCCAAAACCATAGCCTCAGCTTCTGCCTTCTGCAATGTTGCTAGTTCCAGCTCCTAAGGATATAATGTAGGCAAAAATGAAGTTCCCCTCTTGATCTCTGATGATTCCCCCTCCTCCACACTGCCCCTCTGCAGCTACCAACGCTATTGAGTGTGACTCTGAAAGAAGGAGGTTTGATCCATGCAACTGGAATACTTGTATTGTATTGGACAACCGCATCACAAGCTTGACAAATACTGCTCTAGTTGTCTCTAATTTTGACTGTTACTCCTGATAACATGCACAATACAATTTGTGATATTAGTACTAGTTCTATAAAGTGAGGGCCTAGTCCCCTCAAATTTGTTGCTACAACTTGACTTCCATAGCTCCCAACAAATAGTAGGATGTAGGTTCTTGGAAATGAAATTGGTGATAGGGCTGTTGGATTTGTGGTTCCACCAACTTCGTAGGATCATGTTGAGGTTGTCACTTCTAAATCCAATGTCCAGGACCCTGCAAACTTTCTCCAGATCTTCTTAGCTAGGTCACCTTGACAGAACAAATGTTTGATATCTTTATGCTCAACTCTTGTGTTAGAAAGGCTGCAACAGTAACATTGTGGGTTGAGGGCAATCCCAAGTCTTACAACCTTGTCGTCGGTCGATAGCTTGTTGCTGATAGTTCTCCACAAAAGGAAGGACATGTTAAAAGAAACATCTTTTTTCCATAGGTTGCAATAGATTGGATTTGGATCTCTTTTTTACCTGATAGACCTCCAAGTTGAACCAATGCTAAATTTCCCCGAGTTAGATAGGCTCCAGATGGATTTTTCATTGATATTGCTATCAATCTTGATCTCTATGGAGTTGAGCACCGTTTTGTTGATCTCAGGGAGCTGACTATTGAGATAGTTCCAGCTCCAAAAATATGAATAAAGACCTCATTCAGCAAAAAGCATTCGCTGCAAAGTCCAATGCCCAATTGCTGTACAGTAGAGTTGTATTTTACTAGTTATACCAGATACTCTATTTCACAGGCAACTAGCAGACTATGCACGACTTCTCTTGCCAACATGCTATATCTGTTAATTCTTTGGTTATGATGGGAATGACTCTTATTTCAAGGAAGAATACAATTGTTGAACATCTTCTCCAGATATTTCTTTCTCTGCTGATGGATGAGTCTTCTCAAGTTCGTTTGAATATTATTAGTAAGCTAAAACACGTGAACCAGGGGATTCAAATTGATCAGCTCTCCCAATTCTTTCTGCTAGTTCTTGTTTAACTTACAAGGATAGACACTGGATGGTTCAGCTTGCAATAATATAGTTCATCCCTCTATTGCGGAGTCAGTTGGGTCTTCACTTTTGCAATGACAGACTTGCTGCTCTTCTCTATGCTATACCAGTTCACTACCTAGTTGGATTAAAGCATTTTATCAAAGGATTTTATCCTCATATCCTGGCTATTTGCGCACTATCCAAGTCTATTTTAGGTATCCATTTACATATTTCTTCCTTAATGAGTCCGAAGGAAAGAAAGGGCACCTACAATGCAAATAAAAATTGAATGCAAGGCTATGGAAGGCTACTGCTCACCAGTGGCTCTCAGTGCTCGGTGGATTCGACTGGACTAGCAACAATCTGCTTCCTCCAGATATGTTGCTGTTGTTTACTTAGTATACCCTGGAAGGTCGAAGGTTCCTCCAGACATTATGTTCATTGGATGACTCCGCACATGCTAGTTTTCATCTGAAGAACTATATTATGATCCTCAATGGGGTTGTTTCTTTTCTTGGATTGGTAATGTGGCACAGTCTATCTCAGGTATTAACGGGTTCATTTATAACTTGTGTTTTGCTGGGGTGTTCTTTCGAGCGATACAGTATAACTGGCTAGGTGAATTTTGGTGCATCACTAGCTTTTTTTAGTCAAGTTGCTCATGATACTATAAATGTGAAAGAAGGGGCCTCTTAGGATACTCGAAACTGTTATGAAATCACTGAGACACTGAACAGACATAATTATTTCAGTACCATGATAATTTTAGTGGATGCAGCGTTAGCATTATGGAGATTATTCATTCCCTCTTATTCACTATGATGAAATTAGTAGAAGAAAGATATGCCAAGATATATATCTGCTTTTGAGAAATGAGGAAGAAATGTGTTCGCTGTCATGCTAGAAGAAATGACCATTACTGGTGCAAGGTTTGATATTGCCAGAATTATCCTGGCACTCATCATGTTAGTGTGGGGCCCCATTGAGAAGAAGTCCAATAGAATTACAAACAATGAATTATATTAGTGAAGGTTCAGCAGTGTATTATGTTCCTATGGTGGCAGATTGTGCCTTGAGACTTCCTTGGCATGAATTTGATTCTGGTGATGTATTCACCATGCACAACGAAGCTGAGAAAACTCATGAGTATGAATTCCCTGTCTTGAACCTTGAGGACAAGGTTATTATTGAGGGCGCGAGTATTATTTTGGACTTTACTAAGGGTTGGGTCTGGAAAGCATGGACATCAACTTGGGCCTGCATATAAATTAAGATGCAGTACTAGGTCTGACAACCCAGTAAAAGATTAGAGATTATGATGAGGGGAGCCTGGTCGACTACACATGACTTGGGCTATAAAAGGAAAGCAACCACAGATGGCGGGGCATTGAAGAACTTGTATCTTTATTTTCTTGGCTAAAGTTTTAGCAGTCTGGAACTTCTCTTTTCTGTTTCATCTTGTACTGCAGTACTAGAATTCATCTGTAGCTTTTTCAGTAAAGATGGATCCATTACACAGAGCTAGCTTCATCTAACATATGACTTGACACCTTGATGAATTGAAAATTTGATTTAATCATCAACTAGCATGCACTTGGTTGTTCATGGAGTTCAGTTGACCATCTAGCTCCAACTAAATCCAGTTAGTACTGCCCATTGCATGTATGTATGTTTTTCTCTTTCGGATATGGCAGAGTGAAACCCCCTCACCCACCCCAAAAAAATGAAAACAATTGCCTAGGAGTCCTTTAGGAAACTGCTTGTTGTGACTTGAACTCTTCATCTTTTTGGTTGGAAAGGAAGTGCTCTATCTACTGGAGCAATCTCACTCATCTTCCCTGCTCAAATTTTTACTTTTCTGCATTTCAGAAATTATAATATTCTCTTGTTTATCAGGTCCTACTGGAGTTGGCTAGGAACAGAAACAAGATTCCATTGCCGAAATCAATTGCTGGGTCTGGAGTACCACTCCCTCCTGAACAAGATACACTGATCAACCCTAACTATCAGCTAGCTATTGCAAAGAAGCAAACTAACCAACCAGAAGAAACAGAGGAGGACGAAGAAAGCGCTGATCCCAACCCAGCTCCAAGCAAAAATCCAACTCTTTCTCATGAAAAGACAGACTTACCTCAAGGTACTCCTCAACGAGTATCCTTTCCCCTTGGCGCCAAACGTCCAAGATGATGTCTTATGCTTGATCAGCTTTAGTCACAAGAGCCTTTGTAACCGCCTGCCTATGTATTTAATCGAAGGCATTGTATACTTGTTGTTTGAACATGAAGTATGAAACTTTAAGATCCTTC</genome_strand>
        <mrna_strand>CTTCGTTTAATCTTTGCCTATTGCTCGAATTGTGGTGAATCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACCTTGAAAGAAATGGCTGAAGGTGGAGAAGAGGACTTGCCAAGGGATGCAAAGATTGTCAAAACGCTGCTAAAATCAATGGGTGTTGATGACTACGAGCCTCGAGTTGTGCATCAATTTTTGGAATTGTGGTATCGCTATGTTGTTGATGTACTGACGGATGCTCAAGTCTACTCAGAGCATGCAGGGAAGGCTTCCATTGACTCTGATGACATCAAGCTTGCCATTCAGTCAAAAGTTAATTTCAGCTTCTCACAACCCCCGCCGCGTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTACTGGAGTTGGCTAGGAACAGAAACAAGATTCCATTGCCGAAATCAATTGCTGGGTCTGGAGTACCACTCCCTCCTGAACAAGATACACTGATCAACCCTAACTATCAGCTAGCTATTGCAAAGAAGCAAACTAACCAACCAGAAGAAACAGAGGAGGACGAAGAAAGCGCTGATCCCAACCCAGCTCCAAGCAAAAATCCAACTCTTTCTCATGAAAAGACAGACTTACCTCAAGGTACTCCTCAACGAGTATCCTTTCCCCTTGGCGCCAAACGTCCAAGATGATGTCTTATGCTTGATCAGCTTTAGTCACAAGAGCCTTTGTAACCGCCTGCCTATGTATTTAATCGAAGGCATTGTATACTTGNTGTTTGAACATGAAGTATGAAACTTTAAGATCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313320" ref_strand="+" ref_description="SGN-E313320 [cTOA-13-C14]">
      <seq>tcagtgctttttggttcttcgtttaatctttgcctattgctcgaattgtggtgaatcttcggttgaaccttgaaagaaatggctgaaggtggagaagaggacttgccaagggatgcaaagattgtcaaaacgctgctaaaatcaatgggtgttgatgactacgagcctcgagttgtgcatcaatttttggaattgtggtatcgctatgttgttgatgtactgacggatgctcaagtctactcagagcatgcagggaaggcttccattgactctgatgacatcaagcttgccattcagtcaaaagttaatttcagcttctcacaacccccgccgcgtgaggtcctactggagttggctaggaacagaaacaagattccattgccgaaatcaattgctgggtctggagtaccactccctgctgaacaagatacactgatcaaccctaactatcagctagctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="28616" stop="21811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28316" g_stop="28256" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28255" i_stop="26977" i_length="1279">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26976" g_stop="26699" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="339" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26698" i_stop="22234" i_length="4465">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22233" g_stop="22111" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="462" r_length="123" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E313320" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28316" e_stop="28256"/>
          <exon e_start="26976" e_stop="26699"/>
          <exon e_start="22233" e_stop="22111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTGCTTTTTGGTTCTTCGTTTAATCTTTGCCTATTGCTCGAATTGTGGTGAATCTTCGGTAAGTATTCGTATTTGAGGTTCCTTTTTTAGTACTGAATTTGGGGGATTTGTAATTTTGAGTTAGGGTTAAGCTGGCCCTGTATGGAGGTGGAGGTTTATGGTCTTGAATCTTTTGTACTTGAAGGAGGGTTAAAAGGGGTTCAAGACCACCCATTTTTATGGTAATTGGGTGTATTTTGCCCTTTTTTTGAGTTCTATAGCTTCATTAACATTGTTAACTGCTTCTTATGTGATAAAATGGCTCAAATTAACCCTGTGATGATGTACTATTTGGCCTCTTAGTATTGGGTTTGAAGTTATTTGTTTTTTTAGTGTTTTTAGTATGTGATTCTAATAATGGAATTTGTGGAGTTGAAATTGGTTGAATTATACTAGTAGTTTTATTCGTTTGCTTGCTGATATGGTCTATTTTTACCTGTCATGATGTGCTATTCGGTCTTTAAATATGGGATGGAAGTCATAACTTATTAAGTATTTTTACTGTTTCATTCTAATAATTGAATTGTGCGGAGTTGAAATTCGTTGACTTAAAGTAGCACCTTTATTCGATTGCTTGCTGGTATGGACTCTTGGTGTTTTTTTTTCTTGTCCCAGTTATATGGTGTTTTATTTTCTATTAGTTAGTAATAAGAAGCTGAAAAGATTGCTTATTAGCAAGGGAAATGTATGATAGTTTGTGAGGAATGTGTGTTATAATTCTTGTTCAATGCTTCCTTTTTTGAAACTAGAAAATAATTGTAATACTTGTCTCTGATTTTCATTCCCTAGCTCTCCCGTAATGGTTTTATATCTGAAATTTAAGGGTATCCAATGTTGTTGTGTTCCTCCATCTAATAAATTTCGAAACTATTATGGTTCCATTATCACTGCTCTTGAAGTGGAGAAAGGGATCTAATTAATTCCATTTAATGTACTTATTAAACTGTGTTTGAATGTTTCTTTGACCTCAACAGGATTCAATTAGACAGATGGAATTTGGTATTGTTTTATATTTTTAGTTTTATTTTTGTTTTTTCCTTTTCATAGTGCTCTTACTTTATACCTCTAAATATTTTCCGGATTGCTCTTTTGCGTGTATGGAGAAAAGCTGTTTGATGAATGTCTTTCTACATAAGCTCTCACTCTGATGCTTTTCAGAATGTTTGCTATTATGTTTTACAATTTCATGATTTCAACTTGTAGTGCATCACATCTCCATCTCTATCTGGTTTCTGCAACTCTATATTGACACTACTGACGTGTATGAAATGATGCTGATGGTTAATGTTTCTTTTTAGGTTGAACCTTGAAAGAAATGGCTGAAGGTGGAGAAGAGGACTTGCCAAGGGATGCAAAGATTGTCAAAACGCTGCTAAAATCAATGGGTGTTGATGACTACGAGCCTCGAGTTGTGCATCAATTTTTGGAATTGTGGTATCGCTATGTTGTTGATGTACTGACGGATGCTCAAGTCTACTCAGAGCATGCAGGGAAGGCTTCCATTGACTCTGATGACATCAAGCTTGCCATTCAGTCAAAAGTTAATTTCAGCTTCTCACAACCCCCGCCGCGTGAGGTACCAAGTCTTTACTAAATCTTTCATTTTTGTGCTGGTGTTTCATTCTTCCAAGAATGAACTCATATCTTTCTTAGAGACCTTTTAGGTGTATGATGAAACTGATAACCTTTAGCCCTCTCTTGTCTAAGAAAGATAAGTAAAATGGAGTTTCTGAATCAAAGAATTATATGATGTAACTAAATTTTTTGTCTTGGAGTCTTAGGTTGTTCTCTTGTAACGTGTTTCAGAACTTCGGTTGTCATTCGACATAATTATATATTTTAAAGTTATAACTGAAAACAGTGAAAAGGTATCAAACTAATAGGTCATAGTTTGGAAAGTTATCTATTTCAAAATAAAAAAATACATGTCATAGTCTGGTGCTATCATATGTGGTTTATTACCGTGACTGAGAAAAGTTGAACAGCAGGTATTGGTGGCTGAATGCTAGGGTAGTGGTATAGAGATTTTCAGCCTTGTGCAGAACAGAAGATGCTGAAGGTTCTACAGGAATTTTTTTAGGTTGTGAATGGGTTCTGGCATTTTGATTACTTAACAGTTGCTGTTTGTTAGTTGACTAATTCAGAGTATCACAGGATTGGTTAAAAAGTAAAATAAACACTTTTAATCTGCATAGAATTTTCTAGAGTAAAGTCACCAGGTTAAAAATTATCTGTATAGAATTTCCTAGAATAAAGTTACCAAGTTCAAAAAATCTGCATAAGATTTCCTAGACTAATCACACCATTAGAAGGCTGCATAGACACTTCAAAATAAGCAACGACAACTTGACCAATACTGATTCAATCCGAGCTTTTCTTTTTTCTTTTTTTAATTTAAAGGTCCATTGATCATGGAGGTGCAAAAAGTTACAATTTGAGCTTGGCATCCCAAACTTTGTACATGATCATAGAGATGAGACTAACACTCTATTCCTACGCAAAACAAGTGACAATTATTTGAGAGATCAAGGAGGATCATATATGATGTGGCAAGTTTTGCCGGTTTATTCTTAAATGTTGGTAAGCTCCATTTATCCGTATGGACCAGACCTCTTATGTTACTGGGAAGTTCACAGAAGAGATTGAAGGTCTTCACTCCTGCAACTTTATGACTTAGCACTGCTAGTCTGTCCGCCGGTCTATTAGCTTCTCGAAAATAATGGTTGATATTGAAGTCATGATCTTCAATCATCTTCAGGATCTCTTTTATTTGGTTGTAGATTTTCGAAGGAGGTTTCCACTCTTTTCTGGAGCACTTGGCTAGTATCAGGGAATCTGTTTCACCTATCGCCATATCAAAACCTTTGCCAGCACACCATTTCAGTCCAAAACCATAGCCTCAGCTTCTGCCTTCTGCAATGTTGCTAGTTCCAGCTCCTAAGGATATAATGTAGGCAAAAATGAAGTTCCCCTCTTGATCTCTGATGATTCCCCCTCCTCCACACTGCCCCTCTGCAGCTACCAACGCTATTGAGTGTGACTCTGAAAGAAGGAGGTTTGATCCATGCAACTGGAATACTTGTATTGTATTGGACAACCGCATCACAAGCTTGACAAATACTGCTCTAGTTGTCTCTAATTTTGACTGTTACTCCTGATAACATGCACAATACAATTTGTGATATTAGTACTAGTTCTATAAAGTGAGGGCCTAGTCCCCTCAAATTTGTTGCTACAACTTGACTTCCATAGCTCCCAACAAATAGTAGGATGTAGGTTCTTGGAAATGAAATTGGTGATAGGGCTGTTGGATTTGTGGTTCCACCAACTTCGTAGGATCATGTTGAGGTTGTCACTTCTAAATCCAATGTCCAGGACCCTGCAAACTTTCTCCAGATCTTCTTAGCTAGGTCACCTTGACAGAACAAATGTTTGATATCTTTATGCTCAACTCTTGTGTTAGAAAGGCTGCAACAGTAACATTGTGGGTTGAGGGCAATCCCAAGTCTTACAACCTTGTCGTCGGTCGATAGCTTGTTGCTGATAGTTCTCCACAAAAGGAAGGACATGTTAAAAGAAACATCTTTTTTCCATAGGTTGCAATAGATTGGATTTGGATCTCTTTTTTACCTGATAGACCTCCAAGTTGAACCAATGCTAAATTTCCCCGAGTTAGATAGGCTCCAGATGGATTTTTCATTGATATTGCTATCAATCTTGATCTCTATGGAGTTGAGCACCGTTTTGTTGATCTCAGGGAGCTGACTATTGAGATAGTTCCAGCTCCAAAAATATGAATAAAGACCTCATTCAGCAAAAAGCATTCGCTGCAAAGTCCAATGCCCAATTGCTGTACAGTAGAGTTGTATTTTACTAGTTATACCAGATACTCTATTTCACAGGCAACTAGCAGACTATGCACGACTTCTCTTGCCAACATGCTATATCTGTTAATTCTTTGGTTATGATGGGAATGACTCTTATTTCAAGGAAGAATACAATTGTTGAACATCTTCTCCAGATATTTCTTTCTCTGCTGATGGATGAGTCTTCTCAAGTTCGTTTGAATATTATTAGTAAGCTAAAACACGTGAACCAGGGGATTCAAATTGATCAGCTCTCCCAATTCTTTCTGCTAGTTCTTGTTTAACTTACAAGGATAGACACTGGATGGTTCAGCTTGCAATAATATAGTTCATCCCTCTATTGCGGAGTCAGTTGGGTCTTCACTTTTGCAATGACAGACTTGCTGCTCTTCTCTATGCTATACCAGTTCACTACCTAGTTGGATTAAAGCATTTTATCAAAGGATTTTATCCTCATATCCTGGCTATTTGCGCACTATCCAAGTCTATTTTAGGTATCCATTTACATATTTCTTCCTTAATGAGTCCGAAGGAAAGAAAGGGCACCTACAATGCAAATAAAAATTGAATGCAAGGCTATGGAAGGCTACTGCTCACCAGTGGCTCTCAGTGCTCGGTGGATTCGACTGGACTAGCAACAATCTGCTTCCTCCAGATATGTTGCTGTTGTTTACTTAGTATACCCTGGAAGGTCGAAGGTTCCTCCAGACATTATGTTCATTGGATGACTCCGCACATGCTAGTTTTCATCTGAAGAACTATATTATGATCCTCAATGGGGTTGTTTCTTTTCTTGGATTGGTAATGTGGCACAGTCTATCTCAGGTATTAACGGGTTCATTTATAACTTGTGTTTTGCTGGGGTGTTCTTTCGAGCGATACAGTATAACTGGCTAGGTGAATTTTGGTGCATCACTAGCTTTTTTTAGTCAAGTTGCTCATGATACTATAAATGTGAAAGAAGGGGCCTCTTAGGATACTCGAAACTGTTATGAAATCACTGAGACACTGAACAGACATAATTATTTCAGTACCATGATAATTTTAGTGGATGCAGCGTTAGCATTATGGAGATTATTCATTCCCTCTTATTCACTATGATGAAATTAGTAGAAGAAAGATATGCCAAGATATATATCTGCTTTTGAGAAATGAGGAAGAAATGTGTTCGCTGTCATGCTAGAAGAAATGACCATTACTGGTGCAAGGTTTGATATTGCCAGAATTATCCTGGCACTCATCATGTTAGTGTGGGGCCCCATTGAGAAGAAGTCCAATAGAATTACAAACAATGAATTATATTAGTGAAGGTTCAGCAGTGTATTATGTTCCTATGGTGGCAGATTGTGCCTTGAGACTTCCTTGGCATGAATTTGATTCTGGTGATGTATTCACCATGCACAACGAAGCTGAGAAAACTCATGAGTATGAATTCCCTGTCTTGAACCTTGAGGACAAGGTTATTATTGAGGGCGCGAGTATTATTTTGGACTTTACTAAGGGTTGGGTCTGGAAAGCATGGACATCAACTTGGGCCTGCATATAAATTAAGATGCAGTACTAGGTCTGACAACCCAGTAAAAGATTAGAGATTATGATGAGGGGAGCCTGGTCGACTACACATGACTTGGGCTATAAAAGGAAAGCAACCACAGATGGCGGGGCATTGAAGAACTTGTATCTTTATTTTCTTGGCTAAAGTTTTAGCAGTCTGGAACTTCTCTTTTCTGTTTCATCTTGTACTGCAGTACTAGAATTCATCTGTAGCTTTTTCAGTAAAGATGGATCCATTACACAGAGCTAGCTTCATCTAACATATGACTTGACACCTTGATGAATTGAAAATTTGATTTAATCATCAACTAGCATGCACTTGGTTGTTCATGGAGTTCAGTTGACCATCTAGCTCCAACTAAATCCAGTTAGTACTGCCCATTGCATGTATGTATGTTTTTCTCTTTCGGATATGGCAGAGTGAAACCCCCTCACCCACCCCAAAAAAATGAAAACAATTGCCTAGGAGTCCTTTAGGAAACTGCTTGTTGTGACTTGAACTCTTCATCTTTTTGGTTGGAAAGGAAGTGCTCTATCTACTGGAGCAATCTCACTCATCTTCCCTGCTCAAATTTTTACTTTTCTGCATTTCAGAAATTATAATATTCTCTTGTTTATCAGGTCCTACTGGAGTTGGCTAGGAACAGAAACAAGATTCCATTGCCGAAATCAATTGCTGGGTCTGGAGTACCACTCCCTCCTGAACAAGATACACTGATCAACCCTAACTATCAGCTAGCTATT</genome_strand>
        <mrna_strand>TCAGTGCTTTTTGGTTCTTCGTTTAATCTTTGCCTATTGCTCGAATTGTGGTGAATCTTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACCTTGAAAGAAATGGCTGAAGGTGGAGAAGAGGACTTGCCAAGGGATGCAAAGATTGTCAAAACGCTGCTAAAATCAATGGGTGTTGATGACTACGAGCCTCGAGTTGTGCATCAATTTTTGGAATTGTGGTATCGCTATGTTGTTGATGTACTGACGGATGCTCAAGTCTACTCAGAGCATGCAGGGAAGGCTTCCATTGACTCTGATGACATCAAGCTTGCCATTCAGTCAAAAGTTAATTTCAGCTTCTCACAACCCCCGCCGCGTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTACTGGAGTTGGCTAGGAACAGAAACAAGATTCCATTGCCGAAATCAATTGCTGGGTCTGGAGTACCACTCCCTGCTGAACAAGATACACTGATCAACCCTAACTATCAGCTAGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735482" ref_strand="+" ref_description="SGN-E735482 [LC01DB08]">
      <seq>cgtttatattgaaggtcttcactcctgcaactttatgactcaacattgctagcctgtccgccggtctattagcttctcgaaaataatggttgatattcaagtcatgatcttcaatcatcttaccgatctcttctatttggttgtacattttcgaaggaggtttccacccttttctggagcacttggctagtatcagggaatctgtttcacctatcgccatatcaaaacctttgccagcacaccatttcagtccaaaaccatagcctcagcttctgccttctgcaatgttgctagttccagctcctaaggatataatgtaggcaaaaatgaagttcccctcttgatctctgatgattccccctcctccacactgcccctctgcagctaccaacgctattgagtgtgactctgaaagaaggaggtttgatccatgcaactggaatacttgtattgtattggacaaccgcatcacaagcttgacaaatactgctctagttgtctctaattttgactgttactcctgataacatgcacaatacaatttgtgatattagtactagttctataaagtgagggcctagtcccctcaaatttgttgctacaacttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="25935" stop="24731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25640" g_stop="25031" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E735482" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25640" e_stop="25031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGATTGAAGGTCTTCACTCCTGCAACTTTATGACTTAGCACTGCTAGTCTGTCCGCCGGTCTATTAGCTTCTCGAAAATAATGGTTGATATTGAAGTCATGATCTTCAATCATCTTCAGGATCTCTTTTATTTGGTTGTAGATTTTCGAAGGAGGTTTCCACTCTTTTCTGGAGCACTTGGCTAGTATCAGGGAATCTGTTTCACCTATCGCCATATCAAAACCTTTGCCAGCACACCATTTCAGTCCAAAACCATAGCCTCAGCTTCTGCCTTCTGCAATGTTGCTAGTTCCAGCTCCTAAGGATATAATGTAGGCAAAAATGAAGTTCCCCTCTTGATCTCTGATGATTCCCCCTCCTCCACACTGCCCCTCTGCAGCTACCAACGCTATTGAGTGTGACTCTGAAAGAAGGAGGTTTGATCCATGCAACTGGAATACTTGTATTGTATTGGACAACCGCATCACAAGCTTGACAAATACTGCTCTAGTTGTCTCTAATTTTGACTGTTACTCCTGATAACATGCACAATACAATTTGTGATATTAGTACTAGTTCTATAAAGTGAGGGCCTAGTCCCCTCAAATTTGTTGCTACAACTTGAC</genome_strand>
        <mrna_strand>CGTTTATATTGAAGGTCTTCACTCCTGCAACTTTATGACTCAACATTGCTAGCCTGTCCGCCGGTCTATTAGCTTCTCGAAAATAATGGTTGATATTCAAGTCATGATCTTCAATCATCTTACCGATCTCTTCTATTTGGTTGTACATTTTCGAAGGAGGTTTCCACCCTTTTCTGGAGCACTTGGCTAGTATCAGGGAATCTGTTTCACCTATCGCCATATCAAAACCTTTGCCAGCACACCATTTCAGTCCAAAACCATAGCCTCAGCTTCTGCCTTCTGCAATGTTGCTAGTTCCAGCTCCTAAGGATATAATGTAGGCAAAAATGAAGTTCCCCTCTTGATCTCTGATGATTCCCCCTCCTCCACACTGCCCCTCTGCAGCTACCAACGCTATTGAGTGTGACTCTGAAAGAAGGAGGTTTGATCCATGCAACTGGAATACTTGTATTGTATTGGACAACCGCATCACAAGCTTGACAAATACTGCTCTAGTTGTCTCTAATTTTGACTGTTACTCCTGATAACATGCACAATACAATTTGTGATATTAGTACTAGTTCTATAAAGTGAGGGCCTAGTCCCCTCAAATTTGTTGCTACAACTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215509" ref_strand="+" ref_description="SGN-E215509 [cLEL-20-I22](-)">
      <seq>tgtttgtttaaactgcatagagtatgctctcataaagtataagggcatgctagtgttggaagctcctgacttgaaacatcaagggctttgcaagtgcgccgattggtgatagatgattaatgaaaaactagattccagtagttcataacttcgctccacgcttgttccctctttagctgtaccaagtccatatttcttatttatttgttctagtgccgatttttggtggttgcaaatacagtttttcttgaagaggtttagtatggctagtcccacagcccatgtggatcagctttttgctccttctattattcttttgtggattagactcttcttttagtggcatgtgaatcatggtagttctgtattgactgtgtaatgatatatggcttccctatttctgtcagcctttctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="40458" stop="39443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40158" g_stop="39744" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="432"/>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E215509" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40158" e_stop="39744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTGTTTGAACTGCATAGAGTATGCTCTCATGAAGTATAAGGGCATGCTAGTGTTGGAAGCTCCTGACTTGAAACATCAAGGGCTTTGCAAGTGCGCCGATTGGTGATAGATGATTAATGAAAAACTAGATTCCAGTAGTTCATAACTTCGCTCCACGCTTGTTCCCTCTTTAGCTGTACCAAGTCCATATTTCTTATTTATTTGTTCTAGTGCCGATTTTTGGTGGTTGCAAATACAGTTTTTCTTGAAGAGGTTTAGTATGGCTAGTCCCACAGCCCATGTGGATCAGCTTTTTGCTCCTTCTATTATTCTTTTGTGGATTAGACTCTTCTTTTAGTGGCATGTGAATCATGGTAGTTCTGTATTGACTGTGTAATGATATATGGCTTCCCTATTTCTGTCAGCCTTTCTA</genome_strand>
        <mrna_strand>TGTTTGTTTAAACTGCATAGAGTATGCTCTCATAAAGTATAAGGGCATGCTAGTGTTGGAAGCTCCTGACTTGAAACATCAAGGGCTTTGCAAGTGCGCCGATTGGTGATAGATGATTAATGAAAAACTAGATTCCAGTAGTTCATAACTTCGCTCCACGCTTGTTCCCTCTTTAGCTGTACCAAGTCCATATTTCTTATTTATTTGTTCTAGTGCCGATTTTTGGTGGTTGCAAATACAGTTTTTCTTGAAGAGGTTTAGTATGGCTAGTCCCACAGCCCATGTGGATCAGCTTTTTGCTCCTTCTATTATTCTTTTGTGGATTAGACTCTTCTTTTAGTGGCATGTGAATCATGGTAGTTCTGTATTGACTGTGTAATGATATATGGCTTCCCTATTTCTGTCAGCCTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354904" ref_strand="+" ref_description="SGN-E354904 [cTOS-19-C11]">
      <seq>gcaaagagttagtttgcacggaacagtcaagtgggacaagcttatccgtgtgtgtcaccaagatgttattatgagatagccgaggaggaaatgtttgtttgaactgcatagagtatgctctcatgaagtataagggcatgctagtgttggaagctcctgacttgaaacatcaagggctttgcaagtgcgccgattggtgatagatgattaatgaaaaactagattccagtagttcataacttcgctccacgcttgttccctctttagctgtaccaagtccatatttcttatttatttgttctagtgccgatttttggtggttgcaaatacagtttttcttgaagaggtttagtatggctagtcccacagcccatgtggatcagctttttgctcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="40549" stop="39557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40249" g_stop="39857" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="394" polyA_stop="407"/>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E354904" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40249" e_stop="39857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGAGTTAGTTTGCACGGAACAGTCAAGTGGGACAAGCTTATCCGTGTGTGTCACCAAGATGTTATTATGAGATAGCCGAGGAGGAAATGTTTGTTTGAACTGCATAGAGTATGCTCTCATGAAGTATAAGGGCATGCTAGTGTTGGAAGCTCCTGACTTGAAACATCAAGGGCTTTGCAAGTGCGCCGATTGGTGATAGATGATTAATGAAAAACTAGATTCCAGTAGTTCATAACTTCGCTCCACGCTTGTTCCCTCTTTAGCTGTACCAAGTCCATATTTCTTATTTATTTGTTCTAGTGCCGATTTTTGGTGGTTGCAAATACAGTTTTTCTTGAAGAGGTTTAGTATGGCTAGTCCCACAGCCCATGTGGATCAGCTTTTTGCTC</genome_strand>
        <mrna_strand>GCAAAGAGTTAGTTTGCACGGAACAGTCAAGTGGGACAAGCTTATCCGTGTGTGTCACCAAGATGTTATTATGAGATAGCCGAGGAGGAAATGTTTGTTTGAACTGCATAGAGTATGCTCTCATGAAGTATAAGGGCATGCTAGTGTTGGAAGCTCCTGACTTGAAACATCAAGGGCTTTGCAAGTGCGCCGATTGGTGATAGATGATTAATGAAAAACTAGATTCCAGTAGTTCATAACTTCGCTCCACGCTTGTTCCCTCTTTAGCTGTACCAAGTCCATATTTCTTATTTATTTGTTCTAGTGCCGATTTTTGGTGGTTGCAAATACAGTTTTTCTTGAAGAGGTTTAGTATGGCTAGTCCCACAGCCCATGTGGATCAGCTTTTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739901" ref_strand="+" ref_description="SGN-E739901 [LC19BB08]">
      <seq>ctaggaatgagatgcaattcttttatgaggagcagttgcatagaatggaatgcatggcccaagagccagtgctttttgaggatattttgtgtcaaatagttgacatggtcagtccagagaatgaaagctattttacattacgtgatttgaagggaagcaggctctccggtagtgtttttaacatactttttaacctcaataagttcatggcttttgaaacccgcgaccccttcctaattcgtcaggagcgtgagaacccaaatctgactgaatgggatcgcttcgctcacagagaatatattaggctctcaatggaggaagatgcagaggatgcctccaatggaagtgcagatgtctgggatgaatcacttgaggctcccttctgagttctagtctgtgagatagaatgccaggtgtgcctattagcaaatcttgtttcaagctggctattgagttgcaaagagttagtttgcacggaacagtcaagtgggacaagcttatccgtgtgtgtcaccaagatgttattatgagatagccgaggaggaaatgtttgtttgaactgcatagagtatgctctcatgaagtataagggcatgctagtgttggaagctcctgacttgaaacatcaagggctttgcaagtgcgccgattggtgatagatgattaatgaaaaactagattccagtagttcataacttcgctccacgcttgttccctctttagctgtaccaagtccatatttcttatttatttgttctagtgccgatttttggtggttgcaaatacagtttttcctgaagaggtttagtatggctagtcccacagcccatgtggatcagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="42861" stop="39563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42561" g_stop="42443" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42442" i_stop="41362" i_length="1081">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41361" g_stop="41236" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="245" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41235" i_stop="41142" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41141" g_stop="40978" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="409" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40977" i_stop="40297" i_length="681">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.458" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40296" g_stop="39863" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="843" r_length="434" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E739901" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42561" e_stop="42443"/>
          <exon e_start="41361" e_stop="41236"/>
          <exon e_start="41141" e_stop="40978"/>
          <exon e_start="40296" e_stop="39863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGGAATGAGATGCAATTCTTTTATGAGGAGCAGTTGCATAGAATGGAATGCATGGCCCAAGAGCCAGTGCTTTTTGAGGATATTTTGTGTCAAATAGTTGACATGGTCAGTCCAGAGGTAAATTTGGAACTTTTCACGTTTCCAATCCTTTCTTATCTTGTGTCCTTTCCATGTTGTAATTATTGTTCCATAATCATCTGATCTGTATGTATAATTGCAATGCTTGGACAATTTTTCATACCAAGTTAAACTTTGTGAGTAAGATTTGTCTATATAATCCCTTTGGGTGGGGCGAGAGGTTGTTTTAATTGTTGTTAGATTTGTGTTTCCATTAATGTTTGTTGGTATTAAGTTAAGATTTGTCTATATAATCCCTTTGGGTGGGGTGAGAGCTTTTTTAATTGTTGTTAGATTTGTGTTTCGTTAGTGTTTGTTGGTATTAAGTCACTGTCTTATTGATACACCCACTTTTTTTGTCTGGGTGTTCGGCTGTTTGCTGTATGTTTTCTTTAATTTGTTTAGAGGATTTGTATGTTAATATTTTTTTTTACTCTGGGTATGTTGTTTGTTGTATATAATAATACTAAATGTAGAGAATCTCAAAATCATTAGTACTGACTACTACCCTAATTGGTTTTAAAGACACATTAATTGAGTATTGAAATGAAATGAGGCCCAGATGGAGCAGAATGAATTTTGAGGATTCATATATTCAACTCCGACTATTCAGAAACTGAGGTGTAGTAGTTGTTGCTATTGTTGCCTTTATGAAAATACAAAGTAAATTCTGTGTATATAAGAATACGAAATATCTATGTGAGAGTTTCTCTAACCTAAAATCATCACTATGATCTATGTGATGATATAACGTCTAACCACGCTGCTATAGACGCCATATACTTTTTTGGGGTATGGAACCTACTACTAAGTGGATCCACTAGTCTATGCTAAATAATTAAGGAATCATCTAAAAAGTATGACCCTTAAACCCACGTTGGCTGCATAATTAATGGGGGTTGTGAGTTGTCTGAACTCTTCCCCATATCAAGTTAGTCATGGTTAACGACTAACTTGAATTTGTTAGATTGTTTGACAAGGTGTACTATATGTTTAAAAAAAAACATGTAGTTTTAATTTGTATCATCTGCTCTTTTTTCCAAGTACAATAACAGATATAATTCAAGTTTCTTTGTTGCAGAATGAAAGCTATTTTACATTACGTGATTTGAAGGGAAGCAGGCTCTCCGGTAGTGTTTTTAACATACTTTTTAACCTCAATAAGTTCATGGCTTTTGAAACCCGCGACCCCTTCCTAATTCGTCAGGTAATTGAAAGGCTAATATATAGTTTATAATGTAGTTCCGGTGTTGCTTGGCTGTTGTTACCAACGGTTGACATGAGTTTATTCTTGTTTCCAGGAGCGTGAGAACCCAAATCTGACTGAATGGGATCGCTTCGCTCACAGAGAATATATTAGGCTCTCAATGGAGGAAGATGCAGAGGATGCCTCCAATGGAAGTGCAGATGTCTGGGATGAATCACTTGAGGCTCCCTTCTGAGTTCTAGTCTGTGAGATAGAATGGTATGGAGAATGCAGTTACTTAGAATAACCTAAGGCTGCATCTACATACATCGATAGTTCTGCCACCCATTATTTTTTCTCATGCCATGTCTCCATCTCTGATCATGCTGTAAAACACTTTGTTCACCGTTGATGCATATTTATTTATGTGGAAGAAAGTCTTATAGTAGCTACTGAGAGTTTGTTGACATTACATAACCGTAGCTGTAAGATGCACGTTTATGGAGTTGCATATACTGTTAAAGCATGCTGTTATAGTAGAAATAGATGCTTTTGCTAAATTACAGGAATATAGGAGAAAAATAAATACTCATGACTGAGCATCAGTATCAAATGCTCTCAAATTACTGAAAATTCATGAAGCAGAATGGTTTGTCATTCGTCACCCAAGGTAATGTGAATTCACTTATAAAAGAGAGATTTTAGGTGGCTCAGGATAGTATCCACATTTTCTTGATTTTTCAGTCGACACAAGGTACATCTATTGTGTTCATGCCACATTCAGGATGCAGTTAGTTTATGTGGCATGTAGAAATTTTTATGACCTGGCCTCTTCCTGCTTGTAGATATATTACCGCTTCTTATTTGATATGTGAGTTAATGTTGGAAATGGCCTCGCACGATTTAATATTGTTTTCTCCATTTGTCAAGCAGCCTGACCTTATGCTGTTCTTTCTTCAGCCAGGTGTGCCTATTAGCAAATCTTGTTTCAAGCTGGCTATTGAGTTGCAAAGAGTTAGTTTGCACGGAACAGTCAAGTGGGACAAGCTTATCCGTGTGTGTCACCAAGATGTTATTATGAGATAGCCGAGGAGGAAATGTTTGTTTGAACTGCATAGAGTATGCTCTCATGAAGTATAAGGGCATGCTAGTGTTGGAAGCTCCTGACTTGAAACATCAAGGGCTTTGCAAGTGCGCCGATTGGTGATAGATGATTAATGAAAAACTAGATTCCAGTAGTTCATAACTTCGCTCCACGCTTGTTCCCTCTTTAGCTGTACCAAGTCCATATTTCTTATTTATTTGTTCTAGTGCCGATTTTTGGTGGTTGCAAATACAGTTTTTCTTGAAGAGGTTTAGTATGGCTAGTCCCACAGCCCATGTGGATCAGCTTT</genome_strand>
        <mrna_strand>CTAGGAATGAGATGCAATTCTTTTATGAGGAGCAGTTGCATAGAATGGAATGCATGGCCCAAGAGCCAGTGCTTTTTGAGGATATTTTGTGTCAAATAGTTGACATGGTCAGTCCAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAAGCTATTTTACATTACGTGATTTGAAGGGAAGCAGGCTCTCCGGTAGTGTTTTTAACATACTTTTTAACCTCAATAAGTTCATGGCTTTTGAAACCCGCGACCCCTTCCTAATTCGTCAG..............................................................................................GAGCGTGAGAACCCAAATCTGACTGAATGGGATCGCTTCGCTCACAGAGAATATATTAGGCTCTCAATGGAGGAAGATGCAGAGGATGCCTCCAATGGAAGTGCAGATGTCTGGGATGAATCACTTGAGGCTCCCTTCTGAGTTCTAGTCTGTGAGATAGAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGTGTGCCTATTAGCAAATCTTGTTTCAAGCTGGCTATTGAGTTGCAAAGAGTTAGTTTGCACGGAACAGTCAAGTGGGACAAGCTTATCCGTGTGTGTCACCAAGATGTTATTATGAGATAGCCGAGGAGGAAATGTTTGTTTGAACTGCATAGAGTATGCTCTCATGAAGTATAAGGGCATGCTAGTGTTGGAAGCTCCTGACTTGAAACATCAAGGGCTTTGCAAGTGCGCCGATTGGTGATAGATGATTAATGAAAAACTAGATTCCAGTAGTTCATAACTTCGCTCCACGCTTGTTCCCTCTTTAGCTGTACCAAGTCCATATTTCTTATTTATTTGTTCTAGTGCCGATTTTTGGTGGTTGCAAATACAGTTTTTCCTGAAGAGGTTTAGTATGGCTAGTCCCACAGCCCATGTGGATCAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257552" ref_strand="+" ref_description="SGN-E257552 [cLEG-45-E16](-)">
      <seq>caagatgttattatgagatagccgaggaggaaatgtttgtttgaaatgcatagagtatgctctcatgaagtataagggcatgttagtgttggaagctcctgacttgaaacatcaagggctttgcaagtgcgccgattggtgatagatgattaaggaaaaattagattccagtagttcataacttcgctccacgcttgttccctctttagcggtaccaagtccatatttcttatttaatggttctagtgccgatttttggtggttgcaaatacagtttttcttgaagaggtttagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="40491" stop="39596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40191" g_stop="39896" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E257552" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40191" e_stop="39896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATGTTATTATGAGATAGCCGAGGAGGAAATGTTTGTTTGAACTGCATAGAGTATGCTCTCATGAAGTATAAGGGCATGCTAGTGTTGGAAGCTCCTGACTTGAAACATCAAGGGCTTTGCAAGTGCGCCGATTGGTGATAGATGATTAATGAAAAACTAGATTCCAGTAGTTCATAACTTCGCTCCACGCTTGTTCCCTCTTTAGCTGTACCAAGTCCATATTTCTTATTTATTTGTTCTAGTGCCGATTTTTGGTGGTTGCAAATACAGTTTTTCTTGAAGAGGTTTAGTA</genome_strand>
        <mrna_strand>CAAGATGTTATTATGAGATAGCCGAGGAGGAAATGTTTGTTTGAAATGCATAGAGTATGCTCTCATGAAGTATAAGGGCATGTTAGTGTTGGAAGCTCCTGACTTGAAACATCAAGGGCTTTGCAAGTGCGCCGATTGGTGATAGATGATTAAGGAAAAATTAGATTCCAGTAGTTCATAACTTCGCTCCACGCTTGTTCCCTCTTTAGCGGTACCAAGTCCATATTTCTTATTTAATGGTTCTAGTGCCGATTTTTGGTGGTTGCAAATACAGTTTTTCTTGAAGAGGTTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355088" ref_strand="+" ref_description="SGN-E355088 [cTOS-18-O2]">
      <seq>gcaaagagttagtttgcacggaacagtcaagtgggacaagcttatccgtgtgtgtcaccaagatgttattatgagatagccgaggaggaaatgtttgtttgaactgcatagagtatgctctcatgaagtataagggcatgctagtgttggaagctcctgacttgaaacatcaagggctttgcaagtgcgccgattggtgatagatgattaatgaaaaactagattccagtagttcataacttcgctccacgcttgttccctctttagctgtacccaagtccatatttcttattatttgttctagtgccgatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="40549" stop="39634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40249" g_stop="39934" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E355088" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40249" e_stop="39934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGAGTTAGTTTGCACGGAACAGTCAAGTGGGACAAGCTTATCCGTGTGTGTCACCAAGATGTTATTATGAGATAGCCGAGGAGGAAATGTTTGTTTGAACTGCATAGAGTATGCTCTCATGAAGTATAAGGGCATGCTAGTGTTGGAAGCTCCTGACTTGAAACATCAAGGGCTTTGCAAGTGCGCCGATTGGTGATAGATGATTAATGAAAAACTAGATTCCAGTAGTTCATAACTTCGCTCCACGCTTGTTCCCTCTTTAGCTGTA-CCAAGTCCATATTTCTTATTTATTTGTTCTAGTGCCGATTTTTG</genome_strand>
        <mrna_strand>GCAAAGAGTTAGTTTGCACGGAACAGTCAAGTGGGACAAGCTTATCCGTGTGTGTCACCAAGATGTTATTATGAGATAGCCGAGGAGGAAATGTTTGTTTGAACTGCATAGAGTATGCTCTCATGAAGTATAAGGGCATGCTAGTGTTGGAAGCTCCTGACTTGAAACATCAAGGGCTTTGCAAGTGCGCCGATTGGTGATAGATGATTAATGAAAAACTAGATTCCAGTAGTTCATAACTTCGCTCCACGCTTGTTCCCTCTTTAGCTGTACCCAAGTCCATATTTCTTA-TTATTTGTTCTAGTGCCGATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376526" ref_strand="+" ref_description="SGN-E376526 [TUS-17-F23](-)">
      <seq>tggggttataactaggaatgagatgcaattcttttatgaggagcagttgcatagaatggaatgcatggcccaagagccagtgctttttgaggatattttgtgtcaaatagttgacatggtcagtccaaagaatgaaagctattttacattacgtgatttgaagggaagcaggctctccggtagtgtttttaacatactttttaacctcaataagttcatggcttttgaaacccgcgaccccttcctaattcgtcaggagcgtgagaacccaaatttgactgaatgggatcgcttcgctcacaaagaatatattaggctttcaatggaggaaaatgcaaaggatgcctccaatggaagtgcagatgtttgggatgaatcacttgaggctcccttttgagttttagtttgtgagatagaatggtatggagaatgcagttacttagaataacctaaggctgcatttacatacatcgatagttttgccacccattattttttttcatgccatgtttccatctctgatcatgctgtaaaacactttgttccccgttgatgcatatttatttatgtggaagaaagttttatagttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="42872" stop="40510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42572" g_stop="42443" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42442" i_stop="41362" i_length="1081">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41361" g_stop="41236" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="256" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41235" i_stop="41142" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41141" g_stop="40812" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="586" r_length="330" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="618"/>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E376526" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42572" e_stop="42443"/>
          <exon e_start="41361" e_stop="41236"/>
          <exon e_start="41141" e_stop="40812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTTATAACTAGGAATGAGATGCAATTCTTTTATGAGGAGCAGTTGCATAGAATGGAATGCATGGCCCAAGAGCCAGTGCTTTTTGAGGATATTTTGTGTCAAATAGTTGACATGGTCAGTCCAGAGGTAAATTTGGAACTTTTCACGTTTCCAATCCTTTCTTATCTTGTGTCCTTTCCATGTTGTAATTATTGTTCCATAATCATCTGATCTGTATGTATAATTGCAATGCTTGGACAATTTTTCATACCAAGTTAAACTTTGTGAGTAAGATTTGTCTATATAATCCCTTTGGGTGGGGCGAGAGGTTGTTTTAATTGTTGTTAGATTTGTGTTTCCATTAATGTTTGTTGGTATTAAGTTAAGATTTGTCTATATAATCCCTTTGGGTGGGGTGAGAGCTTTTTTAATTGTTGTTAGATTTGTGTTTCGTTAGTGTTTGTTGGTATTAAGTCACTGTCTTATTGATACACCCACTTTTTTTGTCTGGGTGTTCGGCTGTTTGCTGTATGTTTTCTTTAATTTGTTTAGAGGATTTGTATGTTAATATTTTTTTTTACTCTGGGTATGTTGTTTGTTGTATATAATAATACTAAATGTAGAGAATCTCAAAATCATTAGTACTGACTACTACCCTAATTGGTTTTAAAGACACATTAATTGAGTATTGAAATGAAATGAGGCCCAGATGGAGCAGAATGAATTTTGAGGATTCATATATTCAACTCCGACTATTCAGAAACTGAGGTGTAGTAGTTGTTGCTATTGTTGCCTTTATGAAAATACAAAGTAAATTCTGTGTATATAAGAATACGAAATATCTATGTGAGAGTTTCTCTAACCTAAAATCATCACTATGATCTATGTGATGATATAACGTCTAACCACGCTGCTATAGACGCCATATACTTTTTTGGGGTATGGAACCTACTACTAAGTGGATCCACTAGTCTATGCTAAATAATTAAGGAATCATCTAAAAAGTATGACCCTTAAACCCACGTTGGCTGCATAATTAATGGGGGTTGTGAGTTGTCTGAACTCTTCCCCATATCAAGTTAGTCATGGTTAACGACTAACTTGAATTTGTTAGATTGTTTGACAAGGTGTACTATATGTTTAAAAAAAAACATGTAGTTTTAATTTGTATCATCTGCTCTTTTTTCCAAGTACAATAACAGATATAATTCAAGTTTCTTTGTTGCAGAATGAAAGCTATTTTACATTACGTGATTTGAAGGGAAGCAGGCTCTCCGGTAGTGTTTTTAACATACTTTTTAACCTCAATAAGTTCATGGCTTTTGAAACCCGCGACCCCTTCCTAATTCGTCAGGTAATTGAAAGGCTAATATATAGTTTATAATGTAGTTCCGGTGTTGCTTGGCTGTTGTTACCAACGGTTGACATGAGTTTATTCTTGTTTCCAGGAGCGTGAGAACCCAAATCTGACTGAATGGGATCGCTTCGCTCACAGAGAATATATTAGGCTCTCAATGGAGGAAGATGCAGAGGATGCCTCCAATGGAAGTGCAGATGTCTGGGATGAATCACTTGAGGCTCCCTTCTGAGTTCTAGTCTGTGAGATAGAATGGTATGGAGAATGCAGTTACTTAGAATAACCTAAGGCTGCATCTACATACATCGATAGTTCTGCCACCCATTATTTTTTCTCATGCCATGTCTCCATCTCTGATCATGCTGTAAAACACTTTGTTCACCGTTGATGCATATTTATTTATGTGGAAGAAAGTCTTATA</genome_strand>
        <mrna_strand>TGGGGTTATAACTAGGAATGAGATGCAATTCTTTTATGAGGAGCAGTTGCATAGAATGGAATGCATGGCCCAAGAGCCAGTGCTTTTTGAGGATATTTTGTGTCAAATAGTTGACATGGTCAGTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAAGCTATTTTACATTACGTGATTTGAAGGGAAGCAGGCTCTCCGGTAGTGTTTTTAACATACTTTTTAACCTCAATAAGTTCATGGCTTTTGAAACCCGCGACCCCTTCCTAATTCGTCAG..............................................................................................GAGCGTGAGAACCCAAATTTGACTGAATGGGATCGCTTCGCTCACAAAGAATATATTAGGCTTTCAATGGAGGAAAATGCAAAGGATGCCTCCAATGGAAGTGCAGATGTTTGGGATGAATCACTTGAGGCTCCCTTTTGAGTTTTAGTTTGTGAGATAGAATGGTATGGAGAATGCAGTTACTTAGAATAACCTAAGGCTGCATTTACATACATCGATAGTTTTGCCACCCATTATTTTTTTTCATGCCATGTTTCCATCTCTGATCATGCTGTAAAACACTTTGTTCCCCGTTGATGCATATTTATTTATGTGGAAGAAAGTTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708951" ref_strand="+" ref_description="SGN-E708951 [FA42AH07]">
      <seq>cgattattttattacgtaaatcgatcgggtaatggccgtcttaccctcaaggagctgagacgttctgaccttattgctgcaatgcaacatgcggatgaagaagatgacattaacaaggtcctaaggtacttctcgtatgaacatttttacgtgatatattgcaagttttgggagcttgacaccgatcatgattttctcattgataaagagaacctcattcgatatggcaaccacgcccttacgtacaggattgttgatagaatattttctcaggttcctaggaagttcaccagtaaagttgaagggaagatgggctacgaagattttgtttactttatattgtcagaggaggataaatcatcagagcctagtcttgaatactggttcaaatgcatagatatggatggaaatggggttataactaggaatgagatgcaattcttttatgaggagcagttgcatagaatggaatgcatggcccaagagccagtgctttttgaggatattttgtgtcaaatagttgacatggtcagtccagagaatgaaagctattttacattacgtgatttgaagggaagcaggctctccggtagtgtttttaacatactttttaacctcaataagttcatggcttttgaaacccgcgaccccttcctaattcgtcaggagcgtgagaacccaaatctgactgaatgggatcgcttcgctcacagagaatatattaggctctcaatggaggaagatgcagaggatgcctccaatggaagtgcagatgtctgggatgaatcacttgaggctcccttctgagttctagtctgtgagatagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="45608" stop="40678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45309" g_stop="45185" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45184" i_stop="44319" i_length="866">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.713" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44318" g_stop="44171" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="273" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44170" i_stop="44041" i_length="130">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44040" g_stop="43931" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="383" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43930" i_stop="42600" i_length="1331">
            <donor d_prob="0.784" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42599" g_stop="42443" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="540" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42442" i_stop="41362" i_length="1081">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41361" g_stop="41236" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="666" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41235" i_stop="41142" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41141" g_stop="40978" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="830" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E708951" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45309" e_stop="45185"/>
          <exon e_start="44318" e_stop="44171"/>
          <exon e_start="44040" e_stop="43931"/>
          <exon e_start="42599" e_stop="42443"/>
          <exon e_start="41361" e_stop="41236"/>
          <exon e_start="41141" e_stop="40978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATATTTTATTACGTAAATCGATCGGGTAATGGCCGTCTTACCCTCAAGGAGCTGAGACGTTCTGACCTTATTGCTGCAATGCAACATGCGGATGAAGAAGATGACATTAACAAGGTCCTAAGGTAATCCTTGCTTATAATATGGACTTGTAATAAATGCAAAATTTATTTGTGAGAAGTTCAAGAGACTCAGTTCTTTTACATCATTTGATATCATTTATTCAATATAGTTTCACCATGTAAATATTCAAATGTCTTTTCGGTTTACTTTAATTACAAGCATGTTTATGGGACACTGATTGTAGGAAATCATACGCTACAGGATGTGTCAAAAACAGATACGCGGAAAAAGGCATTATATGCAACTAGAATTGCAATAAATGCAAAATTTATTTGTGAGAAATTTAAGGGACTCCGTTCTTTTTACATGATTTGATATTATTTATTCAATATAGTTTCACCATGTAACTTTTCAAATTTCTTTTCGGTTTAGTTTAATAACAAGCATTTTTATGAGATAGTGATTGTAGGAAATCATACTCCATAGGATGTGTCAAAAACAGATACACTGAAAAAGGCATTATATGCCACTAAAATTGCAAAATTCTTTTTGCCACCCAAGTCTTGGTCTAGTGTTAAGAGTGTAGTTTGTAGTGTGGGTTAAGAGTGCACTTCATGGGTTTGGATCGTTCCATGGATAAAAGTCTGACATTGAATTCTGGAAGGTAGAGGCACGGGCTCATTATCCGGCAAGTTTCGACCCGTGCACCATTAATACATGGAAATTTGTTGGTTATCAAAAAGATCAGACACTAGTTTGAAAAGTGGGTGCTAGAAAACTAATAAACTGTGTTTTTGTAGATTTCTTTAAAATATTGGATTTTTGCGGCAGATATTGAATACATTCATATATCTTGTTGAGTTTGTTACACTTAATCTAGCTTGACATTTTCTCCGTTAAGCTCTTGAGCACTTCATTTTTGCTACAGGTACTTCTCGTATGAACATTTTTACGTGATATATTGCAAGTTTTGGGAGCTTGACACCGATCATGATTTTCTCATTGATAAAGAGAACCTCATTCGATATGGCAACCACGCCCTTACGTACAGGATTGTTGATAGAATATTTTCTCAGGTCCGGGTCTTTCATGTACTGTTTGTTGTTTGCAGTTTTATCTTGCCTGTTTTGAGTTTGTAGCTCTTGTATTCTTAAAAATGCTTGCTCATCACTTCATAAGGAGTTCTATGCTTTAATTTGCTATCAGGTTCCTAGGAAGTTCACCAGTAAAGTTGAAGGGAAGATGGGCTACGAAGATTTTGTTTACTTTATATTGTCAGAGGAGGATAAATCATCAGAGCCTAGTCTTGAATACTGGTCAGTTTCTGAATTGACAGTCAACTTTCTTGCAATCTTTGCACTTTTAATGTGACTCAAGAGTTTGGTTTCTGCTGAGTGGAGATTATGTTACTGAGGAAATTTCCTTGTGAAGAAGCAATTTGTTATAACCACCCTTTCTAATAAATATTAGTGACTGGCGTTGATTGTGGATTCACTTCATGTATTGTGCTCTTCAATTCATTGACTCTGGAAGAATAGAGATGATGGTGGAATGTTTCATAAATTAGATATTTCTCTGGAATATACAATTGTCCGACATTTGGTTTTCGAAGATACCTGAAGGCGTTAGATAATGGCATTTAATAATAGTTCCTAACCATAGTATGTTTGAGTAACTTAGATATCATAATTCATAAGGATTCATAAGAGTTCCTTGCAAAAATGCCTACTAATGGGTGCTATTATATGCATATTTAGATTTTGAGATGCATGGAATAATCCTTATAGGGTGCAATGTTGGATTATGATTGAAGCACCTTTGGAACCAAATTGTTATAAGCTTGCAGATGACAATCCAAGCAATTTTTAGTACTCCATCCACCCCAATTTATGAGGCATACGTTCCCTTTCTCATCCCTTTTAAAAAGAATGTCACATACTTATTTTGAAGCATTTTTTTTAACAGGTTTGTGTTGAAGCAATTTAATTTTGAAATCTTCATTTTACCCTTTATAAGATGCTTTTTAGCCAAGCAAATGTCTAATTTTTGTTTTAGATCACAAGTTTCAAAAGTTTTTCTTTCTTATACATTGTGCTCAGTTGAATACCACTACATAAATTGGGAGGATTGGGCATGAGGATCCCAGCAAGTAATGTCATTAAGGGTAAATTGAAAGTTTAAAGTTAAATTGCTGCCGAACATAGAGAAGTGACATTTTTGGGACACACTCAAGGGGGAGTGATTTTCTTTTTTTTTTGATTGTATGTTCATTAATTATCCATAAAGTATCACACAACTTTTGAAGCAGATGATTTGATAACCAAGTAGGATTTTCTATATTTAATTACACTAAAAGCATTGTTGCAACTCTTTTGTTTGTTCACTGTTGAGTGTTGGTGAAACATTATGAAAAATGCACTTAGTTAAATAGCTGCTTCCGTGCTGCTGATCTTGGGTATTTCCTTGTATATTTGTTGCAACCATCAGGCAAACGCTCTTTGATGGGCGTTAGGCTGAGTAGAGTTGTTACAGATTGTTCAATTCACTTCAGAGAAGTAGTTTTTGGGAAGTGTATTGTTATATAATGTACGCACACATGCACTGTTGACACTGATTGTGTTTGTTTGTTATTTTCTTTCTTGATCAGGTTCAAATGCATAGATATGGATGGAAATGGGGTTATAACTAGGAATGAGATGCAATTCTTTTATGAGGAGCAGTTGCATAGAATGGAATGCATGGCCCAAGAGCCAGTGCTTTTTGAGGATATTTTGTGTCAAATAGTTGACATGGTCAGTCCAGAGGTAAATTTGGAACTTTTCACGTTTCCAATCCTTTCTTATCTTGTGTCCTTTCCATGTTGTAATTATTGTTCCATAATCATCTGATCTGTATGTATAATTGCAATGCTTGGACAATTTTTCATACCAAGTTAAACTTTGTGAGTAAGATTTGTCTATATAATCCCTTTGGGTGGGGCGAGAGGTTGTTTTAATTGTTGTTAGATTTGTGTTTCCATTAATGTTTGTTGGTATTAAGTTAAGATTTGTCTATATAATCCCTTTGGGTGGGGTGAGAGCTTTTTTAATTGTTGTTAGATTTGTGTTTCGTTAGTGTTTGTTGGTATTAAGTCACTGTCTTATTGATACACCCACTTTTTTTGTCTGGGTGTTCGGCTGTTTGCTGTATGTTTTCTTTAATTTGTTTAGAGGATTTGTATGTTAATATTTTTTTTTACTCTGGGTATGTTGTTTGTTGTATATAATAATACTAAATGTAGAGAATCTCAAAATCATTAGTACTGACTACTACCCTAATTGGTTTTAAAGACACATTAATTGAGTATTGAAATGAAATGAGGCCCAGATGGAGCAGAATGAATTTTGAGGATTCATATATTCAACTCCGACTATTCAGAAACTGAGGTGTAGTAGTTGTTGCTATTGTTGCCTTTATGAAAATACAAAGTAAATTCTGTGTATATAAGAATACGAAATATCTATGTGAGAGTTTCTCTAACCTAAAATCATCACTATGATCTATGTGATGATATAACGTCTAACCACGCTGCTATAGACGCCATATACTTTTTTGGGGTATGGAACCTACTACTAAGTGGATCCACTAGTCTATGCTAAATAATTAAGGAATCATCTAAAAAGTATGACCCTTAAACCCACGTTGGCTGCATAATTAATGGGGGTTGTGAGTTGTCTGAACTCTTCCCCATATCAAGTTAGTCATGGTTAACGACTAACTTGAATTTGTTAGATTGTTTGACAAGGTGTACTATATGTTTAAAAAAAAACATGTAGTTTTAATTTGTATCATCTGCTCTTTTTTCCAAGTACAATAACAGATATAATTCAAGTTTCTTTGTTGCAGAATGAAAGCTATTTTACATTACGTGATTTGAAGGGAAGCAGGCTCTCCGGTAGTGTTTTTAACATACTTTTTAACCTCAATAAGTTCATGGCTTTTGAAACCCGCGACCCCTTCCTAATTCGTCAGGTAATTGAAAGGCTAATATATAGTTTATAATGTAGTTCCGGTGTTGCTTGGCTGTTGTTACCAACGGTTGACATGAGTTTATTCTTGTTTCCAGGAGCGTGAGAACCCAAATCTGACTGAATGGGATCGCTTCGCTCACAGAGAATATATTAGGCTCTCAATGGAGGAAGATGCAGAGGATGCCTCCAATGGAAGTGCAGATGTCTGGGATGAATCACTTGAGGCTCCCTTCTGAGTTCTAGTCTGTGAGATAGAATG</genome_strand>
        <mrna_strand>CGATTATTTTATTACGTAAATCGATCGGGTAATGGCCGTCTTACCCTCAAGGAGCTGAGACGTTCTGACCTTATTGCTGCAATGCAACATGCGGATGAAGAAGATGACATTAACAAGGTCCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTCTCGTATGAACATTTTTACGTGATATATTGCAAGTTTTGGGAGCTTGACACCGATCATGATTTTCTCATTGATAAAGAGAACCTCATTCGATATGGCAACCACGCCCTTACGTACAGGATTGTTGATAGAATATTTTCTCAG..................................................................................................................................GTTCCTAGGAAGTTCACCAGTAAAGTTGAAGGGAAGATGGGCTACGAAGATTTTGTTTACTTTATATTGTCAGAGGAGGATAAATCATCAGAGCCTAGTCTTGAATACTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAATGCATAGATATGGATGGAAATGGGGTTATAACTAGGAATGAGATGCAATTCTTTTATGAGGAGCAGTTGCATAGAATGGAATGCATGGCCCAAGAGCCAGTGCTTTTTGAGGATATTTTGTGTCAAATAGTTGACATGGTCAGTCCAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAAGCTATTTTACATTACGTGATTTGAAGGGAAGCAGGCTCTCCGGTAGTGTTTTTAACATACTTTTTAACCTCAATAAGTTCATGGCTTTTGAAACCCGCGACCCCTTCCTAATTCGTCAG..............................................................................................GAGCGTGAGAACCCAAATCTGACTGAATGGGATCGCTTCGCTCACAGAGAATATATTAGGCTCTCAATGGAGGAAGATGCAGAGGATGCCTCCAATGGAAGTGCAGATGTCTGGGATGAATCACTTGAGGCTCCCTTCTGAGTTCTAGTCTGTGAGATAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244890" ref_strand="+" ref_description="SGN-E244890 [cLEF-2-D16]">
      <seq>tgacaccgatcatgattttctcattgataaagagaacctcattcgatatggcaaccacgcccttacgtacaggattgttgatagaatattttctcaggttcctaggaagttcaccagtaaagttgaagggaagatgggctacgaagattttgtttactttatattgtcagaggaggataaatcatcagagcctagtcttgaatactggttcaaatgcatagatatggatggaaatggggttataactaggaatgagatgcaattcttttatgaggagcagttgcatagaatggaatgcatggcccaagagccagtgctttttgaggatattttgtgtcaaatagttgacatggtcagtccagagaatgaaagctattttacattacgtgatttgaagggaagcaggctctccggtagtgtttttaacatactttttaacctcaataagttcatggcttttgaaacccgcgaccccttcctaattcgtcaggagcgtgagaacccaaatctgactgaatgggatcgcttcgctcacagagaatatattacgctctcaatggaggaagatgcagaggatgcctccaatggaagtgcagatgtctgggatgaatcacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="44567" stop="40714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44267" g_stop="44171" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44170" i_stop="44041" i_length="130">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44040" g_stop="43931" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="207" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43930" i_stop="42600" i_length="1331">
            <donor d_prob="0.784" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42599" g_stop="42443" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="364" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42442" i_stop="41362" i_length="1081">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41361" g_stop="41236" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="490" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41235" i_stop="41142" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41141" g_stop="41014" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="618" r_length="128" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E244890" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44267" e_stop="44171"/>
          <exon e_start="44040" e_stop="43931"/>
          <exon e_start="42599" e_stop="42443"/>
          <exon e_start="41361" e_stop="41236"/>
          <exon e_start="41141" e_stop="41014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACACCGATCATGATTTTCTCATTGATAAAGAGAACCTCATTCGATATGGCAACCACGCCCTTACGTACAGGATTGTTGATAGAATATTTTCTCAGGTCCGGGTCTTTCATGTACTGTTTGTTGTTTGCAGTTTTATCTTGCCTGTTTTGAGTTTGTAGCTCTTGTATTCTTAAAAATGCTTGCTCATCACTTCATAAGGAGTTCTATGCTTTAATTTGCTATCAGGTTCCTAGGAAGTTCACCAGTAAAGTTGAAGGGAAGATGGGCTACGAAGATTTTGTTTACTTTATATTGTCAGAGGAGGATAAATCATCAGAGCCTAGTCTTGAATACTGGTCAGTTTCTGAATTGACAGTCAACTTTCTTGCAATCTTTGCACTTTTAATGTGACTCAAGAGTTTGGTTTCTGCTGAGTGGAGATTATGTTACTGAGGAAATTTCCTTGTGAAGAAGCAATTTGTTATAACCACCCTTTCTAATAAATATTAGTGACTGGCGTTGATTGTGGATTCACTTCATGTATTGTGCTCTTCAATTCATTGACTCTGGAAGAATAGAGATGATGGTGGAATGTTTCATAAATTAGATATTTCTCTGGAATATACAATTGTCCGACATTTGGTTTTCGAAGATACCTGAAGGCGTTAGATAATGGCATTTAATAATAGTTCCTAACCATAGTATGTTTGAGTAACTTAGATATCATAATTCATAAGGATTCATAAGAGTTCCTTGCAAAAATGCCTACTAATGGGTGCTATTATATGCATATTTAGATTTTGAGATGCATGGAATAATCCTTATAGGGTGCAATGTTGGATTATGATTGAAGCACCTTTGGAACCAAATTGTTATAAGCTTGCAGATGACAATCCAAGCAATTTTTAGTACTCCATCCACCCCAATTTATGAGGCATACGTTCCCTTTCTCATCCCTTTTAAAAAGAATGTCACATACTTATTTTGAAGCATTTTTTTTAACAGGTTTGTGTTGAAGCAATTTAATTTTGAAATCTTCATTTTACCCTTTATAAGATGCTTTTTAGCCAAGCAAATGTCTAATTTTTGTTTTAGATCACAAGTTTCAAAAGTTTTTCTTTCTTATACATTGTGCTCAGTTGAATACCACTACATAAATTGGGAGGATTGGGCATGAGGATCCCAGCAAGTAATGTCATTAAGGGTAAATTGAAAGTTTAAAGTTAAATTGCTGCCGAACATAGAGAAGTGACATTTTTGGGACACACTCAAGGGGGAGTGATTTTCTTTTTTTTTTGATTGTATGTTCATTAATTATCCATAAAGTATCACACAACTTTTGAAGCAGATGATTTGATAACCAAGTAGGATTTTCTATATTTAATTACACTAAAAGCATTGTTGCAACTCTTTTGTTTGTTCACTGTTGAGTGTTGGTGAAACATTATGAAAAATGCACTTAGTTAAATAGCTGCTTCCGTGCTGCTGATCTTGGGTATTTCCTTGTATATTTGTTGCAACCATCAGGCAAACGCTCTTTGATGGGCGTTAGGCTGAGTAGAGTTGTTACAGATTGTTCAATTCACTTCAGAGAAGTAGTTTTTGGGAAGTGTATTGTTATATAATGTACGCACACATGCACTGTTGACACTGATTGTGTTTGTTTGTTATTTTCTTTCTTGATCAGGTTCAAATGCATAGATATGGATGGAAATGGGGTTATAACTAGGAATGAGATGCAATTCTTTTATGAGGAGCAGTTGCATAGAATGGAATGCATGGCCCAAGAGCCAGTGCTTTTTGAGGATATTTTGTGTCAAATAGTTGACATGGTCAGTCCAGAGGTAAATTTGGAACTTTTCACGTTTCCAATCCTTTCTTATCTTGTGTCCTTTCCATGTTGTAATTATTGTTCCATAATCATCTGATCTGTATGTATAATTGCAATGCTTGGACAATTTTTCATACCAAGTTAAACTTTGTGAGTAAGATTTGTCTATATAATCCCTTTGGGTGGGGCGAGAGGTTGTTTTAATTGTTGTTAGATTTGTGTTTCCATTAATGTTTGTTGGTATTAAGTTAAGATTTGTCTATATAATCCCTTTGGGTGGGGTGAGAGCTTTTTTAATTGTTGTTAGATTTGTGTTTCGTTAGTGTTTGTTGGTATTAAGTCACTGTCTTATTGATACACCCACTTTTTTTGTCTGGGTGTTCGGCTGTTTGCTGTATGTTTTCTTTAATTTGTTTAGAGGATTTGTATGTTAATATTTTTTTTTACTCTGGGTATGTTGTTTGTTGTATATAATAATACTAAATGTAGAGAATCTCAAAATCATTAGTACTGACTACTACCCTAATTGGTTTTAAAGACACATTAATTGAGTATTGAAATGAAATGAGGCCCAGATGGAGCAGAATGAATTTTGAGGATTCATATATTCAACTCCGACTATTCAGAAACTGAGGTGTAGTAGTTGTTGCTATTGTTGCCTTTATGAAAATACAAAGTAAATTCTGTGTATATAAGAATACGAAATATCTATGTGAGAGTTTCTCTAACCTAAAATCATCACTATGATCTATGTGATGATATAACGTCTAACCACGCTGCTATAGACGCCATATACTTTTTTGGGGTATGGAACCTACTACTAAGTGGATCCACTAGTCTATGCTAAATAATTAAGGAATCATCTAAAAAGTATGACCCTTAAACCCACGTTGGCTGCATAATTAATGGGGGTTGTGAGTTGTCTGAACTCTTCCCCATATCAAGTTAGTCATGGTTAACGACTAACTTGAATTTGTTAGATTGTTTGACAAGGTGTACTATATGTTTAAAAAAAAACATGTAGTTTTAATTTGTATCATCTGCTCTTTTTTCCAAGTACAATAACAGATATAATTCAAGTTTCTTTGTTGCAGAATGAAAGCTATTTTACATTACGTGATTTGAAGGGAAGCAGGCTCTCCGGTAGTGTTTTTAACATACTTTTTAACCTCAATAAGTTCATGGCTTTTGAAACCCGCGACCCCTTCCTAATTCGTCAGGTAATTGAAAGGCTAATATATAGTTTATAATGTAGTTCCGGTGTTGCTTGGCTGTTGTTACCAACGGTTGACATGAGTTTATTCTTGTTTCCAGGAGCGTGAGAACCCAAATCTGACTGAATGGGATCGCTTCGCTCACAGAGAATATATTAGGCTCTCAATGGAGGAAGATGCAGAGGATGCCTCCAATGGAAGTGCAGATGTCTGGGATGAATCACTTGA</genome_strand>
        <mrna_strand>TGACACCGATCATGATTTTCTCATTGATAAAGAGAACCTCATTCGATATGGCAACCACGCCCTTACGTACAGGATTGTTGATAGAATATTTTCTCAG..................................................................................................................................GTTCCTAGGAAGTTCACCAGTAAAGTTGAAGGGAAGATGGGCTACGAAGATTTTGTTTACTTTATATTGTCAGAGGAGGATAAATCATCAGAGCCTAGTCTTGAATACTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAATGCATAGATATGGATGGAAATGGGGTTATAACTAGGAATGAGATGCAATTCTTTTATGAGGAGCAGTTGCATAGAATGGAATGCATGGCCCAAGAGCCAGTGCTTTTTGAGGATATTTTGTGTCAAATAGTTGACATGGTCAGTCCAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAAGCTATTTTACATTACGTGATTTGAAGGGAAGCAGGCTCTCCGGTAGTGTTTTTAACATACTTTTTAACCTCAATAAGTTCATGGCTTTTGAAACCCGCGACCCCTTCCTAATTCGTCAG..............................................................................................GAGCGTGAGAACCCAAATCTGACTGAATGGGATCGCTTCGCTCACAGAGAATATATTACGCTCTCAATGGAGGAAGATGCAGAGGATGCCTCCAATGGAAGTGCAGATGTCTGGGATGAATCACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257551" ref_strand="+" ref_description="SGN-E257551 [cLEG-45-E16]">
      <seq>ttcccagcacacctgaatttcaagagcgttatgctgaaactgtagtatacagaatattttattacgtaaatctatcgggtaatggccgtcttaccctcaaggagctgagacgttctgaccttattgctgcaatgcaacatgcggatgaagaagatgacattaacaaggtcctaaggtacttctcgtatgaacatttttacgtgatatattgcaagttttgggagcttgacaccgatcatgattttctcatagacaaagagaacctcattcgatatggcaaccacgcccttacgtacaggattgttgatagaatattttctcaggttcctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="46126" stop="43867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45825" g_stop="45793" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45792" i_stop="45327" i_length="466">
            <donor d_prob="0.360" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45326" g_stop="45185" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="175" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45184" i_stop="44319" i_length="866">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.713" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44318" g_stop="44171" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="323" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44170" i_stop="44041" i_length="130">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44040" g_stop="44033" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="331" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E257551" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45825" e_stop="45793"/>
          <exon e_start="45326" e_stop="45185"/>
          <exon e_start="44318" e_stop="44171"/>
          <exon e_start="44040" e_stop="44033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGAGCACACCTGAATTTCAAGAGCGTTATGGTACCTTCTCAGTCTCACGTGCTGGATTCATTCTAATCTGCAGATCCATTTGTATTCTCTTGTTTCCTAAATGTTCCATTGTGTGTTGTATATTGTTTCTTTTGGGTCCATCTTTTATGTCATCTGATGCTTACATCATAAATGAACTTTTGAGATGGGTAGCAATTACAACATGTTTGACTTGCTTGTACTTGAAAAGCTGTTTCTTGTCGAAGACCTTTTAGGAAGATCTTTACAGGAATTCCTTTACTAAATAAGTATTCTACAACATCCCAGTTAATGTTTTTATTGAAGTCCTTGGGATTTTCATTACTTGCTCCCATTAAAGGAATCATCTTCCAATTAAATTTAGCCAACTTCTTTTGCTTCAATTTTCTGTCTTTTTATTTTTAGGACGAGTCTGCCTTCATTTTTCTTTCTGGCAGCAGACTATTTTCTTGACAGTCAATTTCGTTGCATTTGCCAGCTGAAACTGTAGTATACAGAATATTTTATTACGTAAATCGATCGGGTAATGGCCGTCTTACCCTCAAGGAGCTGAGACGTTCTGACCTTATTGCTGCAATGCAACATGCGGATGAAGAAGATGACATTAACAAGGTCCTAAGGTAATCCTTGCTTATAATATGGACTTGTAATAAATGCAAAATTTATTTGTGAGAAGTTCAAGAGACTCAGTTCTTTTACATCATTTGATATCATTTATTCAATATAGTTTCACCATGTAAATATTCAAATGTCTTTTCGGTTTACTTTAATTACAAGCATGTTTATGGGACACTGATTGTAGGAAATCATACGCTACAGGATGTGTCAAAAACAGATACGCGGAAAAAGGCATTATATGCAACTAGAATTGCAATAAATGCAAAATTTATTTGTGAGAAATTTAAGGGACTCCGTTCTTTTTACATGATTTGATATTATTTATTCAATATAGTTTCACCATGTAACTTTTCAAATTTCTTTTCGGTTTAGTTTAATAACAAGCATTTTTATGAGATAGTGATTGTAGGAAATCATACTCCATAGGATGTGTCAAAAACAGATACACTGAAAAAGGCATTATATGCCACTAAAATTGCAAAATTCTTTTTGCCACCCAAGTCTTGGTCTAGTGTTAAGAGTGTAGTTTGTAGTGTGGGTTAAGAGTGCACTTCATGGGTTTGGATCGTTCCATGGATAAAAGTCTGACATTGAATTCTGGAAGGTAGAGGCACGGGCTCATTATCCGGCAAGTTTCGACCCGTGCACCATTAATACATGGAAATTTGTTGGTTATCAAAAAGATCAGACACTAGTTTGAAAAGTGGGTGCTAGAAAACTAATAAACTGTGTTTTTGTAGATTTCTTTAAAATATTGGATTTTTGCGGCAGATATTGAATACATTCATATATCTTGTTGAGTTTGTTACACTTAATCTAGCTTGACATTTTCTCCGTTAAGCTCTTGAGCACTTCATTTTTGCTACAGGTACTTCTCGTATGAACATTTTTACGTGATATATTGCAAGTTTTGGGAGCTTGACACCGATCATGATTTTCTCATTGATAAAGAGAACCTCATTCGATATGGCAACCACGCCCTTACGTACAGGATTGTTGATAGAATATTTTCTCAGGTCCGGGTCTTTCATGTACTGTTTGTTGTTTGCAGTTTTATCTTGCCTGTTTTGAGTTTGTAGCTCTTGTATTCTTAAAAATGCTTGCTCATCACTTCATAAGGAGTTCTATGCTTTAATTTGCTATCAGGTTCCTAG</genome_strand>
        <mrna_strand>TTCCCAGCACACCTGAATTTCAAGAGCGTTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAACTGTAGTATACAGAATATTTTATTACGTAAATCTATCGGGTAATGGCCGTCTTACCCTCAAGGAGCTGAGACGTTCTGACCTTATTGCTGCAATGCAACATGCGGATGAAGAAGATGACATTAACAAGGTCCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTCTCGTATGAACATTTTTACGTGATATATTGCAAGTTTTGGGAGCTTGACACCGATCATGATTTTCTCATAGACAAAGAGAACCTCATTCGATATGGCAACCACGCCCTTACGTACAGGATTGTTGATAGAATATTTTCTCAG..................................................................................................................................GTTCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249492" ref_strand="+" ref_description="SGN-E249492 [cLEF-56-M12]">
      <seq>gatatagcaactcaaatgtacacaatcttgaagcagccggaccttagatacctcgtgcaggatgacttcaaacccattcttcgggaacttttggcaacacatccagggttggagttcttacagagcacacctgaatttcaagagcgttatgctgaaactgtagtatacagaatattttattacgtaaatcgatcgggtaatggccgtcttaccctcaaggagctgagacgttctgaccttattgctgcaatgcaacatgcggatgaagaagatgacattaacaaggtcctaaggtacttctcgtatgaacatttttacgtgatatattgcaagttttgggagcttgacaccgatcatgattttctcattgataaagagaacctcattcgatatggcaaccacgcccttacgtacaggattgttgatagaatattttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="46517" stop="43873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46217" g_stop="46158" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46157" i_stop="45884" i_length="274">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45883" g_stop="45793" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="151" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45792" i_stop="45327" i_length="466">
            <donor d_prob="0.360" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45326" g_stop="45185" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="293" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45184" i_stop="44319" i_length="866">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.713" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44318" g_stop="44173" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="439" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E249492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46217" e_stop="46158"/>
          <exon e_start="45883" e_stop="45793"/>
          <exon e_start="45326" e_stop="45185"/>
          <exon e_start="44318" e_stop="44173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATAGCAACTCAAATGTACACAATCTTGAAGCAGCCGGACCTTAGATACCTCGTGCAGGTGCTTTGTCTAGTTCCTGTTGATGATTAAAATTCCTTCTGATTTTCTGTGTCGTAATTCAGAAGATAATATGATTTTGGTTTGATTTATGATTCTGTGCGCACAAATCTTTTAAGGCACACTAAGGTTTTGTGGATTACTAGATTATCCTCTTCTTTTAAAATTATATGATGAGGATCCATATAGCTGTCCCCAACTTATTGGGACTCAGCGTAGTTGTTTGGAAAATAAATTGTCCTCTTCTTTCCAATGACTTCTATCAACTGGATTGCAGGATGACTTCAAACCCATTCTTCGGGAACTTTTGGCAACACATCCAGGGTTGGAGTTCTTACAGAGCACACCTGAATTTCAAGAGCGTTATGGTACCTTCTCAGTCTCACGTGCTGGATTCATTCTAATCTGCAGATCCATTTGTATTCTCTTGTTTCCTAAATGTTCCATTGTGTGTTGTATATTGTTTCTTTTGGGTCCATCTTTTATGTCATCTGATGCTTACATCATAAATGAACTTTTGAGATGGGTAGCAATTACAACATGTTTGACTTGCTTGTACTTGAAAAGCTGTTTCTTGTCGAAGACCTTTTAGGAAGATCTTTACAGGAATTCCTTTACTAAATAAGTATTCTACAACATCCCAGTTAATGTTTTTATTGAAGTCCTTGGGATTTTCATTACTTGCTCCCATTAAAGGAATCATCTTCCAATTAAATTTAGCCAACTTCTTTTGCTTCAATTTTCTGTCTTTTTATTTTTAGGACGAGTCTGCCTTCATTTTTCTTTCTGGCAGCAGACTATTTTCTTGACAGTCAATTTCGTTGCATTTGCCAGCTGAAACTGTAGTATACAGAATATTTTATTACGTAAATCGATCGGGTAATGGCCGTCTTACCCTCAAGGAGCTGAGACGTTCTGACCTTATTGCTGCAATGCAACATGCGGATGAAGAAGATGACATTAACAAGGTCCTAAGGTAATCCTTGCTTATAATATGGACTTGTAATAAATGCAAAATTTATTTGTGAGAAGTTCAAGAGACTCAGTTCTTTTACATCATTTGATATCATTTATTCAATATAGTTTCACCATGTAAATATTCAAATGTCTTTTCGGTTTACTTTAATTACAAGCATGTTTATGGGACACTGATTGTAGGAAATCATACGCTACAGGATGTGTCAAAAACAGATACGCGGAAAAAGGCATTATATGCAACTAGAATTGCAATAAATGCAAAATTTATTTGTGAGAAATTTAAGGGACTCCGTTCTTTTTACATGATTTGATATTATTTATTCAATATAGTTTCACCATGTAACTTTTCAAATTTCTTTTCGGTTTAGTTTAATAACAAGCATTTTTATGAGATAGTGATTGTAGGAAATCATACTCCATAGGATGTGTCAAAAACAGATACACTGAAAAAGGCATTATATGCCACTAAAATTGCAAAATTCTTTTTGCCACCCAAGTCTTGGTCTAGTGTTAAGAGTGTAGTTTGTAGTGTGGGTTAAGAGTGCACTTCATGGGTTTGGATCGTTCCATGGATAAAAGTCTGACATTGAATTCTGGAAGGTAGAGGCACGGGCTCATTATCCGGCAAGTTTCGACCCGTGCACCATTAATACATGGAAATTTGTTGGTTATCAAAAAGATCAGACACTAGTTTGAAAAGTGGGTGCTAGAAAACTAATAAACTGTGTTTTTGTAGATTTCTTTAAAATATTGGATTTTTGCGGCAGATATTGAATACATTCATATATCTTGTTGAGTTTGTTACACTTAATCTAGCTTGACATTTTCTCCGTTAAGCTCTTGAGCACTTCATTTTTGCTACAGGTACTTCTCGTATGAACATTTTTACGTGATATATTGCAAGTTTTGGGAGCTTGACACCGATCATGATTTTCTCATTGATAAAGAGAACCTCATTCGATATGGCAACCACGCCCTTACGTACAGGATTGTTGATAGAATATTTTCTC</genome_strand>
        <mrna_strand>GATATAGCAACTCAAATGTACACAATCTTGAAGCAGCCGGACCTTAGATACCTCGTGCAG..................................................................................................................................................................................................................................................................................GATGACTTCAAACCCATTCTTCGGGAACTTTTGGCAACACATCCAGGGTTGGAGTTCTTACAGAGCACACCTGAATTTCAAGAGCGTTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAACTGTAGTATACAGAATATTTTATTACGTAAATCGATCGGGTAATGGCCGTCTTACCCTCAAGGAGCTGAGACGTTCTGACCTTATTGCTGCAATGCAACATGCGGATGAAGAAGATGACATTAACAAGGTCCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTCTCGTATGAACATTTTTACGTGATATATTGCAAGTTTTGGGAGCTTGACACCGATCATGATTTTCTCATTGATAAAGAGAACCTCATTCGATATGGCAACCACGCCCTTACGTACAGGATTGTTGATAGAATATTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252865" ref_strand="+" ref_description="SGN-E252865 [cLEG-16-B17]">
      <seq>tgaaataattaatgagcctgcaaaagaactgataccacagttttactttcaaaatggtcgccctcctccaaatgaattgaaggaacgctgtttgtttaggataaaccagttcttttatggtcatactgatgggctacaaatgaatgagtttaaaccaattacaaagaaatatgcactgcttcttctccgctgtcctttttaagaagatcgatgttgacggcactggcgtcataaccagggatgcctttgttgattattggatacacgggaacatgttgacaaaagatatagcaactcaaatgtacacaatcttgaagcagccggaccttagatacctcgtgcaggatgacttcaaacccattcttcgggaacttttggcaacacatccagggttggagttctacagagcacacctgaatttcaagagcgttatgctgaaactgtagtatacagaatattttattacgtaaatcgatcgggtaatggccgtcttaccctcaaggagctgagacgttctgaccttattgctgcaatgcaacatgcggatgaagaagatgacattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="49682" stop="44896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49382" g_stop="49342" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49341" i_stop="49251" i_length="91">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49250" g_stop="49145" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="146" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49144" i_stop="46761" i_length="2384">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46760" g_stop="46661" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="238" r_length="92" r_score="0.920"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46660" i_stop="46264" i_length="397">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.096" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46263" g_stop="46158" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="344" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46157" i_stop="45884" i_length="274">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45883" g_stop="45793" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="434" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45792" i_stop="45327" i_length="466">
            <donor d_prob="0.360" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45326" g_stop="45196" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="565" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E252865" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49382" e_stop="49342"/>
          <exon e_start="49250" e_stop="49145"/>
          <exon e_start="46760" e_stop="46661"/>
          <exon e_start="46263" e_stop="46158"/>
          <exon e_start="45883" e_stop="45793"/>
          <exon e_start="45326" e_stop="45196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTAATTAATGAGCCTGCAAAAGAACTGATACCACAGGTATGGAATACCTAATTCTGATTGGATATTTTATTTGCAGACTGTTGAGATTGTAGTTGTGATGTTTTTTCGAAAATGCTTGTGATGGCAGTTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATGGTAAGTTGTACTTTACGAATTGATTCTATGAAGGCTTCTGAGATGATAATGGATATGCTTGCGACCTTCTGAATTGATACTTCTTGTTCTTTGACTAAATCCACTTCAAATGTTTTCTTTTGCATAAAAAATGGGGTGGGGATAGGGGTTGGTCGATCTGTGATGGGATTTTATTCACTAAACAGTACCAACTAATTGCTAGTTAAATACAAAATCGCTAAAATGAACTGTCTCCCTTTCAACTGAAATTCATCATAGTATATAGTGCTTTGAGTTTTAAACTATGTGCTTCAATTCTTCCTTCAAAGCAGCATGAATCCTTTTTTCCCATACCACCCACAAGATGCATATTTTTATTCCAGACGTTCTTAATGTACAGTCACAAGAATTAGTTGCAGCGACATTTGTGCCAGAAAATGTGGTAAGACACATTCAATGGACCACCTACCTTTGACATTCTTAAGCCAAAATTTCACCTGCGTTTGGACAAAATAGATACTTCCTCTTGCCTGCTTGTATATGGTGGACTATATGGAAAGAGAGAAATGATGGATGTTTTGAAATAGGGACAACAACCTTCAGGAAGTGAAGCTTAAATGTATTTTGTTCTGTTTTTGGTGTACAAGTGTCTACTCCAATGAGACTGAGTCAATTGTAGATGGTTTAGGGTCCATCTAGTTCCTGGTTTAGCAATGGAAGGACTTCAATCTTTTTTCTTGTTTTTGTAAATATGGTTTTTCAGTACTACCTAAGTACTGACTGAAATACAATGTTAGGAAAAAAAAAAGAGATCAACAATCATGAAACAAGAGAAGGAATAAAATGCACCAGGCATGATTTTGGACCGGTACAGGGTTATATAAAGCACTATTGACAGCATTATGATGAGATAAACAGGTCACCAATTAAGTACCTCTTTATACTTGTATATTTATAGTACTTTACCCTCTAAATACAAATTAACTTACGATGAAAACAATAGAAAAAATATGTTTCTTGTGGGTGGCATGGAAAGATAACTATCCCTCCCTTTGAGCTTGTGAAGGCATCTTACAATGTTCTAGGCATTACCCACTAAACTTCAAACAGGCTTAGGAATATGTTTCGAGTCCACATGACTTCAGTGTCTTACAGAAAATTCTGTTCCCCACCCTCATATATGTAACATCTACCCAGTCAATCTGTGACAAGTTTACTGCATTGCAATCCAGCCCAAGCAGTGTATTCTAAAGATTGCCCCGAAGAGACATGGAGATGTTGACTACGTTATCCATAATATGTGGAACTATTGACATAGATTTGTTATTTATGACAATGAGATACCATCTATCAAAAAAGTTAAAGAGTTTTTTTTTTTTTAAAAAACAATTCGGCCATAATTGAAATCCCTGAGAATTGGAAACCTTATTTATGCAGACCAAAATTCTATTCAGGAGCCCTCTTGTATGTTGTTAACAAAGCCAAACCGATAAGAAGTTTCTTTCTCTCTTTTTCTGTTTTGCCTAATGTTTCACATGCTTCAGTTATCACATTATTTTGCTCTTGGTGCTATGTTATGCTTTCCATATTATTGCTATGACTTAGTTGCTATATCTTATTGACTGCTGTATTCGCTTTTGTAACTGCTTTGTTATGAGTTACTTGAGTCGAGGGTCTTTCAGGAACCTCTCTATCTCTCAAAGTAGAGGTAAGGTCTCCAAACACACTACCCTCCGCCGACCTCACTTGTTGGAATACACCGGGTATGTTGTTGTTGTTTTCACTTTAACCTTTTCATGTCCTTCACATAGATTATTCTTTATCAACTTCTTTTATTTCATCGGAACCTTCACCTTTTGAGTGGCATCTCATTCAAGTTAGTCCCCTGGAAGAATATTATTTTTGGGTTAAAGACTGCAATGTGGAAGCACTACATTGGAATAGTTGCTGCATTTTTTTTAAAAAAAATAGTAATGTTGTATTCCTCAGCATTAAGGGTATGCTGGTGACCTACATAAATTTTACATAGAGGGGCTCGGAAGGCTAATTCCAAAAATCCTAACATATCTACTAGTTGCTCTTCCTCTATACATTCCTGTTTACACCAAAAATACAAATATACAATGCAATTTTCTTTGACTTTCTGTATGGAGTTTGATTTGTTCTCATAGCATCTTCCATTTCTTTCCTTCCATACTGACAACCATATGTATAGTTGCTGCATTTTATTGGAATTTTGGAACTAGAGCAAATTGTTAAATGCTGAAATTTTCAATATTATTTATAATTTGCAAGTGTTGGGGTTATGCTGTTGGAATGAAGACACCTGATTAAAGAGCCCTTTGTTTATTTGTTGTGTATTTGAGTTATAACTAAACATTAATTTATTTTTCATTGGTTGTTAGAGTTTAAACCAATTACAAAGGAAATATGCAAGCTGCCCTCGTTCTTCTCCGCTGTCCTTTTTAAGAAGATCGATGTTGACGGCACTGGCGTCATAACCAGGTACATGTTTCTGTCTTTTTGAGTATGAAGATGATTCATTTACTTTGTGGATACACATCCCAAATCGGAAGTCCCAAATTCTAAGTGCAATCCAATATCCATCATCTTAAAATTTGAATCTGAGATTCAGTCCATAATCCTACAATTCAAACAGAAATCTCAAAAAATTGTATTCAGGTTCTGATTTCTATTTTCCCCAAACTATGCCACCTGAATCGCCTTAGGGGTGTGTTATATTTGAAATGAATATTTAAGTGGCAGAAAGAGAGCCCATGAAATGAAACCAAATGTATCAGAGTCACATGCAATGTGCCTGAGGCATTTCTGAATTGATGTGAAATATTTCTGGAGCGCTTGAGGAGTGAGTTGAAATGCAATTTGCTTCGCATGACTGCAGGGATGCCTTTGTTGATTATTGGATACACGGGAACATGTTGACAAAAGATATAGCAACTCAAATGTACACAATCTTGAAGCAGCCGGACCTTAGATACCTCGTGCAGGTGCTTTGTCTAGTTCCTGTTGATGATTAAAATTCCTTCTGATTTTCTGTGTCGTAATTCAGAAGATAATATGATTTTGGTTTGATTTATGATTCTGTGCGCACAAATCTTTTAAGGCACACTAAGGTTTTGTGGATTACTAGATTATCCTCTTCTTTTAAAATTATATGATGAGGATCCATATAGCTGTCCCCAACTTATTGGGACTCAGCGTAGTTGTTTGGAAAATAAATTGTCCTCTTCTTTCCAATGACTTCTATCAACTGGATTGCAGGATGACTTCAAACCCATTCTTCGGGAACTTTTGGCAACACATCCAGGGTTGGAGTTCTTACAGAGCACACCTGAATTTCAAGAGCGTTATGGTACCTTCTCAGTCTCACGTGCTGGATTCATTCTAATCTGCAGATCCATTTGTATTCTCTTGTTTCCTAAATGTTCCATTGTGTGTTGTATATTGTTTCTTTTGGGTCCATCTTTTATGTCATCTGATGCTTACATCATAAATGAACTTTTGAGATGGGTAGCAATTACAACATGTTTGACTTGCTTGTACTTGAAAAGCTGTTTCTTGTCGAAGACCTTTTAGGAAGATCTTTACAGGAATTCCTTTACTAAATAAGTATTCTACAACATCCCAGTTAATGTTTTTATTGAAGTCCTTGGGATTTTCATTACTTGCTCCCATTAAAGGAATCATCTTCCAATTAAATTTAGCCAACTTCTTTTGCTTCAATTTTCTGTCTTTTTATTTTTAGGACGAGTCTGCCTTCATTTTTCTTTCTGGCAGCAGACTATTTTCTTGACAGTCAATTTCGTTGCATTTGCCAGCTGAAACTGTAGTATACAGAATATTTTATTACGTAAATCGATCGGGTAATGGCCGTCTTACCCTCAAGGAGCTGAGACGTTCTGACCTTATTGCTGCAATGCAACATGCGGATGAAGAAGATGACATTAAC</genome_strand>
        <mrna_strand>TGAAA-TAATTAATGAGCCTGCAAAAGAACTGATACCACAG...........................................................................................TTTTACTTTCAAAATGGTCGCCCTCCTCCAAATGAATTGAAGGAACGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTAAACCAATTACAAA-GAAATATGC-A-CTG----C-TTCTTCTCCGCTGTCCTTTTTAAGAAGATCGATGTTGACGGCACTGGCGTCATAACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCTTTGTTGATTATTGGATACACGGGAACATGTTGACAAAAGATATAGCAACTCAAATGTACACAATCTTGAAGCAGCCGGACCTTAGATACCTCGTGCAG..................................................................................................................................................................................................................................................................................GATGACTTCAAACCCATTCTTCGGGAACTTTTGGCAACACATCCAGGGTTGGAGTTC-TACAGAGCACACCTGAATTTCAAGAGCGTTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAACTGTAGTATACAGAATATTTTATTACGTAAATCGATCGGGTAATGGCCGTCTTACCCTCAAGGAGCTGAGACGTTCTGACCTTATTGCTGCAATGCAACATGCGGATGAAGAAGATGACATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321334" ref_strand="+" ref_description="SGN-E321334 [cTOB-23-N17]">
      <seq>gcgattcgcgatggatgtggattttaatggtgatgtagcgagtttggatgctgagcttttgcagttacctgagttgtctcctttggctattaaaacgaatccttttgttgccgagaagctatttgatcaatggctttcgcttcctgatactgccgctttggtgaaatctttgattaagaatgccaaaggtggcggtccattgaatgtgtctactacatcgtctgggacaaatgtcgtggcaactaattctttgccgtccatgtttcctgctggaagtacacctccactttctccaagaagctcatctggttcacctcgaatctcaaagcacagggctggaccctcttcattggggtctcctctgaaattaattaatgagcctgcaaaagaactgataccacagttttactttcaaaatggtcgcccccctccaaatgaattgaaggaacgctgtttgtttaggataaaccagttcttttatggtcatactgatgggctacaaatgaatgagtttaaaccaattacaaaggaaatatgcaagctgccctcgttcttctccgctgtcctttttaagaagatcgatgttgacggcactggcgtcataaccagggatgcctttgttgattattggatacacgggaacatgttgacaaaagatatagcaactcaaatgtacacaatcttgaagcagccggaccttagatacctcgtgcaggatgacttcaaacccattcttcgggaacttttggcacacatccagggttggagttcttacagagcacacctgaatttcaagaagcgtatgctgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="53863" stop="45487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53563" g_stop="53404" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53403" i_stop="49585" i_length="3819">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49584" g_stop="49342" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="403" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49341" i_stop="49251" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49250" g_stop="49145" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="509" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49144" i_stop="46761" i_length="2384">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46760" g_stop="46661" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="609" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46660" i_stop="46264" i_length="397">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.096" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46263" g_stop="46158" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="715" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46157" i_stop="45884" i_length="274">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45883" g_stop="45793" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="805" r_length="90" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E321334" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53563" e_stop="53404"/>
          <exon e_start="49584" e_stop="49342"/>
          <exon e_start="49250" e_stop="49145"/>
          <exon e_start="46760" e_stop="46661"/>
          <exon e_start="46263" e_stop="46158"/>
          <exon e_start="45883" e_stop="45793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATTCGCGATGGATGTGGATTTTAATGGTGATGTAGCGAGTTTGGATGCTGAGCTTTTGCAGTTACCTGAGTTGTCTCCTTTGGCTATTAAAACGAATCCTTTTGTTGCCGAGAAGCTATTTGATCAATGGCTTTCGCTTCCTGATACTGCCGCTTTGGTAATTTCCTTATTTTCTATTTTTGCGACTTTTTTTTTTTGTTGATGTAGTAGGAGTTAGCTGTCAAAATTTGAATTTGGATTTGCTTGTACCTAGGTATACTTATTCGGAGATGTGTCAACCTGTACTGTGTGGGAGTACTTATTGTTTTATAGGTTACCACTGGTTTGGCGGTGTGCTGTATAAGGAAAAAACTGATCTTGGTGTAATACCCTGCACTACTAATAAAATGATTGGCTTCCAGTATAAACTCTGCATTAATGACACCTTCAAAACTTATGGTGGAATGTAAATGTTGTTTTATGTGAGAGAAAATACGGGAACAATAGATGTATTTGCAATACTAGGATAAGAGTACATGAAGTGTCTAAAAATACCCTTAAAACTTTATTATTGAGATTGCTATTGCAATCTGACATAACAATATATGTAATATTATCCTATTTGAGGGCACTAGGTGATAAGACTTGGGGTTAGATTACCTGGTAGTTGTGCTAGTGGAAGGTATTATGTATGCGGTAGAATAGTTGAGGGGTGCAATAACGATCAAGCTGTCTTTACAACATGGTAAACTTCACATTAGAATCCGTATGAACTACCCATTCATTAGTTAGGTGGCTGTTTGGCATATCCTTTTATTTTTGTTGAAGCTACTTTATCGTTTTACCAAGAGGGTTTCTTATGCTGTGAGTATGCATTACTCAGAGCATCACTTTTTGGGGTTTTTTCCACTTTCATAGTTCAATTATATGCAGAATTCTGGGGGTTACATCTTTTAATAACTAGTGTAAATGACCTGGCTCACCAATTGGTACCGAAAGAGAGCGTCACTTCTCTAGAACATTACCTACAAATACAATTGTCTAGCTATGCCGAGAAAACTATGGTAGCAATCCATGAATTCTATAGTATTCACGTACAATCTCAGAGAATTTCTCTAATTCTCTCAGAGATGGGAAACCTACATTTGTCATTATCTTACTCCAAAGAAGGAATTGGACAGGTTATCTTTGTATTAACTATCAAGATAATTAGTTACCATTGGTAAATTTTTTTAAATTAAAATTAACTATCAAGATAATTGGAAGTGATCAAATCATGGTATCTTCATCCAGTTAGAATTTTCATTTGGTCGGTGAAGCTGTTGGGAACAGAACGTTTCTTTGGGTAAAAAACCTTAGTACTTTATCTAAAGTCTCCAAAATGTAAAAAGGAGCAGTGTTCTGATAAGTTCAGAGATGCTTCCTTATTCTTTGACCACTTCAGCTAGTGACAGCTTCTTTTAGAGTCCTTGAAATGACCAACTGGGCTCTGAAGTGATTAAGAAACCGGGAGAGAGGAAAGTAATGCAGGAACAGATGGTTTATGGGCTTGGCGGACTTCTCATACACCACTGCAAGTGATTACTACCTTTCCTGCAGTTTATGGATGGCAGTCCAACCAAAGCATACCACTTATAGTGGAGCTTTATCCTGATAAAAAATTTACCCTGATTTAAAAAGCTTTAGTGGGGCTTTAATTTTCTTGAAGATTCTCTTGATAGTTACCTTTCCACCATTTTTGTGGTAAGGTAAATAATTTTATTAACAATTTTGAGAACCTCGTATACAAGACATACCAAAAAAGGAGAACCTTGACCATCATATGGTTCTCAATAAAAGAGGTTCAATCCTCTACAAACATGAAGACCAAAAGGAAACTAGAGACAAAGAACTACTTTGCAGTTTTATAAAAGCTTGCTCCATTCCTTCAAAAAGGCCCCCTTATTTCTCTCTTTCCAGATAACCCACATGATGGCTGGGGGGCCACTCTCCTTCCCCTTGGGCCTTTCTTCCTTCTCATATGAGTCCAACTTTGAAAAACCTCCTTCATTGTGCTTGGCATCACCCATTGCATCCGAATTAAATTAAAGCACCATGACCTTCTCATTTCCCTTGGGAGCCTATACAATTGTTTACCCTAAACCTTCTAGAAGTAAGAAACGTCATAGTGCATGGTAACTTGTGAAGAAAATTTGGAACTTTCATTTTTGATGTAGTAAATTTACGTCATTAGTCTACAACAGGCAGAGTTTATTAACCAGTAAAATGCTGAAACAATGGAAATAGAAGGCTTTAAAACTTATTGGATGGAAAAAGATGAACTCTTGACATTCCAAAGGAAAAAAGTAGTCAGTAAAGTTAGGAGTCTTAAAAGGACAAGAAGTGTGCTATATCTTCAACTGTTACAACAACAACAACTTCCACAAGAAGTGGACCTCCAAATGCATCAACTGACACAGAGAATAAAACCAAATAAATAGTTCCAGATTGTTTGGTTAATGAACTGAATAAATTCCAAATGCATAAGCAAGTAGGTTCTATGTGATGATTGAAGGTGTTAAACTGCAATGAGATAGACTCCAAATTACTTAGATAAATTGTCTCGAAAAACCACTCTTATCAAAGGCTCGCTTAACACTGATGAGGAACAGAACATGTTGAGCGCTTCCTCCTTGCATCACGGGCACTTCAGTGTCATCGTCAATATTCAAGGCTACAAGTCATACTTTTCCTTGCCAATGAGCGTAATCATGAGGAGGTGGCACTGAACAATTGATATTTTACTTTATCGTAATCTTTTTTCAATTTCTTGTCCATATATTTGATATTTTTTATTACAAATTATTTGTCTTGGACTACACATGCATATTTTTATTTTTCCTCCATTTGTGCCTTTCTTCTTAGGCCCACGCTTTATTTGCGATTTGTGCTTAAAGCATCAATGGACCTTTGAGTTTTTTTGCGCTTTTCAACTTCGAAAACTTTTGGAAAATGTGTAATTTATAACCAGGAAAAGCAGTTTTAGCTAAGTATAGAACATAATGGAAGCAAAGCTATACGAATTATGGTTAAGCTTCTTTTTTTGTTGGAACACTTATATTAGGTCCTATGTTTTTCTAAAGTCGTTTTAGCATATGAGGGAAGGTCTGTCTGCCTATGTAGGTAAAAAGGTGATTTAGCGAATTTCTAGTTTTGGAGAACCTCTAACCTAACTTAGAAGACATTATTGAGTGTTGGAATGAATTGTGCTCATGTATAACAAAGCATATATAGGGTTTCTTATTGTTGACCTTGAATAGTTTGAGATCGACATGCAGTTTTTTTGGGTATAATACATAAATGTGCACTTTAACTTGGCTTCGAATCACATTTATGCCCTTCAACTTTGGGTGTGCACAAGTAGACACTTAAACTTGTATAAAGTTGTACAGATAAACACACATGTTCTATATGTCATCCTACATGTTATTTTTTGTCCTACGTGGTGTCCTACGTGTATTGTGCCATTTAGGACTCATGTGTTTATTTATTTAAAAGTTTGATAGTTAAAGTGTCTGTTTGTGCATTATGAAAGTTGGAGGTCAAAGTTAAACTTTGAAGCCATGTTTAGGGTCCAATATATATATATATTATGCCCTTTTTTTGGGTGAACTATAGAATTTTGATATGTTAATCCCTACCTACTAGTATGGAAGGATTACCAACCAAGAAAACATATACAGTTTTATGGCCTGACTTGTTAGACAAGTAGACCTTTGGATTAAATTATATTCTTAAAAAATCAAATTGCTTACTTAAGACTCGTAGATAGAGTGCGTTCACCATATAGAACTATAGAGAGGTACTTTATCGGTGACTTGTCTATCTCATCATAATGATATGCATAGTGCTTTTACCAAAACCATGTCTGGTGCATTTTATTCCTTTTCTCATTCTTTGTTATATTGCTGATTTCTATCCATTGGTAACAGAAAATATTTGTTTTCTCCACATGCAGGTGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGTGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGCTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTGCAAAAGAACTGATACCACAGGTATGGAATACCTAATTCTGATTGGATATTTTATTTGCAGACTGTTGAGATTGTAGTTGTGATGTTTTTTCGAAAATGCTTGTGATGGCAGTTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATGGTAAGTTGTACTTTACGAATTGATTCTATGAAGGCTTCTGAGATGATAATGGATATGCTTGCGACCTTCTGAATTGATACTTCTTGTTCTTTGACTAAATCCACTTCAAATGTTTTCTTTTGCATAAAAAATGGGGTGGGGATAGGGGTTGGTCGATCTGTGATGGGATTTTATTCACTAAACAGTACCAACTAATTGCTAGTTAAATACAAAATCGCTAAAATGAACTGTCTCCCTTTCAACTGAAATTCATCATAGTATATAGTGCTTTGAGTTTTAAACTATGTGCTTCAATTCTTCCTTCAAAGCAGCATGAATCCTTTTTTCCCATACCACCCACAAGATGCATATTTTTATTCCAGACGTTCTTAATGTACAGTCACAAGAATTAGTTGCAGCGACATTTGTGCCAGAAAATGTGGTAAGACACATTCAATGGACCACCTACCTTTGACATTCTTAAGCCAAAATTTCACCTGCGTTTGGACAAAATAGATACTTCCTCTTGCCTGCTTGTATATGGTGGACTATATGGAAAGAGAGAAATGATGGATGTTTTGAAATAGGGACAACAACCTTCAGGAAGTGAAGCTTAAATGTATTTTGTTCTGTTTTTGGTGTACAAGTGTCTACTCCAATGAGACTGAGTCAATTGTAGATGGTTTAGGGTCCATCTAGTTCCTGGTTTAGCAATGGAAGGACTTCAATCTTTTTTCTTGTTTTTGTAAATATGGTTTTTCAGTACTACCTAAGTACTGACTGAAATACAATGTTAGGAAAAAAAAAAGAGATCAACAATCATGAAACAAGAGAAGGAATAAAATGCACCAGGCATGATTTTGGACCGGTACAGGGTTATATAAAGCACTATTGACAGCATTATGATGAGATAAACAGGTCACCAATTAAGTACCTCTTTATACTTGTATATTTATAGTACTTTACCCTCTAAATACAAATTAACTTACGATGAAAACAATAGAAAAAATATGTTTCTTGTGGGTGGCATGGAAAGATAACTATCCCTCCCTTTGAGCTTGTGAAGGCATCTTACAATGTTCTAGGCATTACCCACTAAACTTCAAACAGGCTTAGGAATATGTTTCGAGTCCACATGACTTCAGTGTCTTACAGAAAATTCTGTTCCCCACCCTCATATATGTAACATCTACCCAGTCAATCTGTGACAAGTTTACTGCATTGCAATCCAGCCCAAGCAGTGTATTCTAAAGATTGCCCCGAAGAGACATGGAGATGTTGACTACGTTATCCATAATATGTGGAACTATTGACATAGATTTGTTATTTATGACAATGAGATACCATCTATCAAAAAAGTTAAAGAGTTTTTTTTTTTTTAAAAAACAATTCGGCCATAATTGAAATCCCTGAGAATTGGAAACCTTATTTATGCAGACCAAAATTCTATTCAGGAGCCCTCTTGTATGTTGTTAACAAAGCCAAACCGATAAGAAGTTTCTTTCTCTCTTTTTCTGTTTTGCCTAATGTTTCACATGCTTCAGTTATCACATTATTTTGCTCTTGGTGCTATGTTATGCTTTCCATATTATTGCTATGACTTAGTTGCTATATCTTATTGACTGCTGTATTCGCTTTTGTAACTGCTTTGTTATGAGTTACTTGAGTCGAGGGTCTTTCAGGAACCTCTCTATCTCTCAAAGTAGAGGTAAGGTCTCCAAACACACTACCCTCCGCCGACCTCACTTGTTGGAATACACCGGGTATGTTGTTGTTGTTTTCACTTTAACCTTTTCATGTCCTTCACATAGATTATTCTTTATCAACTTCTTTTATTTCATCGGAACCTTCACCTTTTGAGTGGCATCTCATTCAAGTTAGTCCCCTGGAAGAATATTATTTTTGGGTTAAAGACTGCAATGTGGAAGCACTACATTGGAATAGTTGCTGCATTTTTTTTAAAAAAAATAGTAATGTTGTATTCCTCAGCATTAAGGGTATGCTGGTGACCTACATAAATTTTACATAGAGGGGCTCGGAAGGCTAATTCCAAAAATCCTAACATATCTACTAGTTGCTCTTCCTCTATACATTCCTGTTTACACCAAAAATACAAATATACAATGCAATTTTCTTTGACTTTCTGTATGGAGTTTGATTTGTTCTCATAGCATCTTCCATTTCTTTCCTTCCATACTGACAACCATATGTATAGTTGCTGCATTTTATTGGAATTTTGGAACTAGAGCAAATTGTTAAATGCTGAAATTTTCAATATTATTTATAATTTGCAAGTGTTGGGGTTATGCTGTTGGAATGAAGACACCTGATTAAAGAGCCCTTTGTTTATTTGTTGTGTATTTGAGTTATAACTAAACATTAATTTATTTTTCATTGGTTGTTAGAGTTTAAACCAATTACAAAGGAAATATGCAAGCTGCCCTCGTTCTTCTCCGCTGTCCTTTTTAAGAAGATCGATGTTGACGGCACTGGCGTCATAACCAGGTACATGTTTCTGTCTTTTTGAGTATGAAGATGATTCATTTACTTTGTGGATACACATCCCAAATCGGAAGTCCCAAATTCTAAGTGCAATCCAATATCCATCATCTTAAAATTTGAATCTGAGATTCAGTCCATAATCCTACAATTCAAACAGAAATCTCAAAAAATTGTATTCAGGTTCTGATTTCTATTTTCCCCAAACTATGCCACCTGAATCGCCTTAGGGGTGTGTTATATTTGAAATGAATATTTAAGTGGCAGAAAGAGAGCCCATGAAATGAAACCAAATGTATCAGAGTCACATGCAATGTGCCTGAGGCATTTCTGAATTGATGTGAAATATTTCTGGAGCGCTTGAGGAGTGAGTTGAAATGCAATTTGCTTCGCATGACTGCAGGGATGCCTTTGTTGATTATTGGATACACGGGAACATGTTGACAAAAGATATAGCAACTCAAATGTACACAATCTTGAAGCAGCCGGACCTTAGATACCTCGTGCAGGTGCTTTGTCTAGTTCCTGTTGATGATTAAAATTCCTTCTGATTTTCTGTGTCGTAATTCAGAAGATAATATGATTTTGGTTTGATTTATGATTCTGTGCGCACAAATCTTTTAAGGCACACTAAGGTTTTGTGGATTACTAGATTATCCTCTTCTTTTAAAATTATATGATGAGGATCCATATAGCTGTCCCCAACTTATTGGGACTCAGCGTAGTTGTTTGGAAAATAAATTGTCCTCTTCTTTCCAATGACTTCTATCAACTGGATTGCAGGATGACTTCAAACCCATTCTTCGGGAACTTTTGGCAACACATCCAGGGTTGGAGTTCTTACAGAGCACACCTGAATTTCAAGAGCGTTATG</genome_strand>
        <mrna_strand>GCGATTCGCGATGGATGTGGATTTTAATGGTGATGTAGCGAGTTTGGATGCTGAGCTTTTGCAGTTACCTGAGTTGTCTCCTTTGGCTATTAAAACGAATCCTTTTGTTGCCGAGAAGCTATTTGATCAATGGCTTTCGCTTCCTGATACTGCCGCTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGTGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGCTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTGCAAAAGAACTGATACCACAG...........................................................................................TTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTAAACCAATTACAAAGGAAATATGCAAGCTGCCCTCGTTCTTCTCCGCTGTCCTTTTTAAGAAGATCGATGTTGACGGCACTGGCGTCATAACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCTTTGTTGATTATTGGATACACGGGAACATGTTGACAAAAGATATAGCAACTCAAATGTACACAATCTTGAAGCAGCCGGACCTTAGATACCTCGTGCAG..................................................................................................................................................................................................................................................................................GATGACTTCAAACCCATTCTTCGGGAACTTTTGGC-ACACATCCAGGGTTGGAGTTCTTACAGAGCACACCTGAATTTCAAGAAGCGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302392" ref_strand="+" ref_description="SGN-E302392 [cLEW-27-D10]">
      <seq>aatggctttcgcttcctgatactgccgctttggtgaaatctttgattaagaatgccaaaggtggcggtccattgaatgtgtctactacatcgtctgggacaaatgtcgtggcaactaattctttgccgtccatgtttcctgctggaagtacacctccactttctccaagaagctcatctggttcacctcgaatctcaaagcacagggctggaccctcttcattggggtctcctctgaaattaattaatgagcctgcaaaagaactgataccacagttttactttcaaaatggtcgcccccctccaaatgaattgaaggaacgctgtttgtttaggataaaccagttcttttatggtcatactgatgggctacaaatgaatgagtttaaaccaattacaaaggaaatatgcaagctgccctcgttcttctccgctgtcctttttaagaagatcgatgttgacggcactggcgtcataaccagggatgcctttgttgattattggatacacgggaacatgttgacaaaagatatagcaactcaaatgtacacaatcttgaagcagccggaccttagatacctcgtgcaggatgacttcaaacccattcttcgggaacttttggcaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="53735" stop="45543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53435" g_stop="53404" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53403" i_stop="49585" i_length="3819">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49584" g_stop="49342" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="275" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49341" i_stop="49251" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49250" g_stop="49145" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="381" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49144" i_stop="46761" i_length="2384">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46760" g_stop="46661" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="481" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46660" i_stop="46264" i_length="397">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.096" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46263" g_stop="46158" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="587" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46157" i_stop="45884" i_length="274">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45883" g_stop="45843" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="628" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E302392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53435" e_stop="53404"/>
          <exon e_start="49584" e_stop="49342"/>
          <exon e_start="49250" e_stop="49145"/>
          <exon e_start="46760" e_stop="46661"/>
          <exon e_start="46263" e_stop="46158"/>
          <exon e_start="45883" e_stop="45843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTTTCGCTTCCTGATACTGCCGCTTTGGTAATTTCCTTATTTTCTATTTTTGCGACTTTTTTTTTTTGTTGATGTAGTAGGAGTTAGCTGTCAAAATTTGAATTTGGATTTGCTTGTACCTAGGTATACTTATTCGGAGATGTGTCAACCTGTACTGTGTGGGAGTACTTATTGTTTTATAGGTTACCACTGGTTTGGCGGTGTGCTGTATAAGGAAAAAACTGATCTTGGTGTAATACCCTGCACTACTAATAAAATGATTGGCTTCCAGTATAAACTCTGCATTAATGACACCTTCAAAACTTATGGTGGAATGTAAATGTTGTTTTATGTGAGAGAAAATACGGGAACAATAGATGTATTTGCAATACTAGGATAAGAGTACATGAAGTGTCTAAAAATACCCTTAAAACTTTATTATTGAGATTGCTATTGCAATCTGACATAACAATATATGTAATATTATCCTATTTGAGGGCACTAGGTGATAAGACTTGGGGTTAGATTACCTGGTAGTTGTGCTAGTGGAAGGTATTATGTATGCGGTAGAATAGTTGAGGGGTGCAATAACGATCAAGCTGTCTTTACAACATGGTAAACTTCACATTAGAATCCGTATGAACTACCCATTCATTAGTTAGGTGGCTGTTTGGCATATCCTTTTATTTTTGTTGAAGCTACTTTATCGTTTTACCAAGAGGGTTTCTTATGCTGTGAGTATGCATTACTCAGAGCATCACTTTTTGGGGTTTTTTCCACTTTCATAGTTCAATTATATGCAGAATTCTGGGGGTTACATCTTTTAATAACTAGTGTAAATGACCTGGCTCACCAATTGGTACCGAAAGAGAGCGTCACTTCTCTAGAACATTACCTACAAATACAATTGTCTAGCTATGCCGAGAAAACTATGGTAGCAATCCATGAATTCTATAGTATTCACGTACAATCTCAGAGAATTTCTCTAATTCTCTCAGAGATGGGAAACCTACATTTGTCATTATCTTACTCCAAAGAAGGAATTGGACAGGTTATCTTTGTATTAACTATCAAGATAATTAGTTACCATTGGTAAATTTTTTTAAATTAAAATTAACTATCAAGATAATTGGAAGTGATCAAATCATGGTATCTTCATCCAGTTAGAATTTTCATTTGGTCGGTGAAGCTGTTGGGAACAGAACGTTTCTTTGGGTAAAAAACCTTAGTACTTTATCTAAAGTCTCCAAAATGTAAAAAGGAGCAGTGTTCTGATAAGTTCAGAGATGCTTCCTTATTCTTTGACCACTTCAGCTAGTGACAGCTTCTTTTAGAGTCCTTGAAATGACCAACTGGGCTCTGAAGTGATTAAGAAACCGGGAGAGAGGAAAGTAATGCAGGAACAGATGGTTTATGGGCTTGGCGGACTTCTCATACACCACTGCAAGTGATTACTACCTTTCCTGCAGTTTATGGATGGCAGTCCAACCAAAGCATACCACTTATAGTGGAGCTTTATCCTGATAAAAAATTTACCCTGATTTAAAAAGCTTTAGTGGGGCTTTAATTTTCTTGAAGATTCTCTTGATAGTTACCTTTCCACCATTTTTGTGGTAAGGTAAATAATTTTATTAACAATTTTGAGAACCTCGTATACAAGACATACCAAAAAAGGAGAACCTTGACCATCATATGGTTCTCAATAAAAGAGGTTCAATCCTCTACAAACATGAAGACCAAAAGGAAACTAGAGACAAAGAACTACTTTGCAGTTTTATAAAAGCTTGCTCCATTCCTTCAAAAAGGCCCCCTTATTTCTCTCTTTCCAGATAACCCACATGATGGCTGGGGGGCCACTCTCCTTCCCCTTGGGCCTTTCTTCCTTCTCATATGAGTCCAACTTTGAAAAACCTCCTTCATTGTGCTTGGCATCACCCATTGCATCCGAATTAAATTAAAGCACCATGACCTTCTCATTTCCCTTGGGAGCCTATACAATTGTTTACCCTAAACCTTCTAGAAGTAAGAAACGTCATAGTGCATGGTAACTTGTGAAGAAAATTTGGAACTTTCATTTTTGATGTAGTAAATTTACGTCATTAGTCTACAACAGGCAGAGTTTATTAACCAGTAAAATGCTGAAACAATGGAAATAGAAGGCTTTAAAACTTATTGGATGGAAAAAGATGAACTCTTGACATTCCAAAGGAAAAAAGTAGTCAGTAAAGTTAGGAGTCTTAAAAGGACAAGAAGTGTGCTATATCTTCAACTGTTACAACAACAACAACTTCCACAAGAAGTGGACCTCCAAATGCATCAACTGACACAGAGAATAAAACCAAATAAATAGTTCCAGATTGTTTGGTTAATGAACTGAATAAATTCCAAATGCATAAGCAAGTAGGTTCTATGTGATGATTGAAGGTGTTAAACTGCAATGAGATAGACTCCAAATTACTTAGATAAATTGTCTCGAAAAACCACTCTTATCAAAGGCTCGCTTAACACTGATGAGGAACAGAACATGTTGAGCGCTTCCTCCTTGCATCACGGGCACTTCAGTGTCATCGTCAATATTCAAGGCTACAAGTCATACTTTTCCTTGCCAATGAGCGTAATCATGAGGAGGTGGCACTGAACAATTGATATTTTACTTTATCGTAATCTTTTTTCAATTTCTTGTCCATATATTTGATATTTTTTATTACAAATTATTTGTCTTGGACTACACATGCATATTTTTATTTTTCCTCCATTTGTGCCTTTCTTCTTAGGCCCACGCTTTATTTGCGATTTGTGCTTAAAGCATCAATGGACCTTTGAGTTTTTTTGCGCTTTTCAACTTCGAAAACTTTTGGAAAATGTGTAATTTATAACCAGGAAAAGCAGTTTTAGCTAAGTATAGAACATAATGGAAGCAAAGCTATACGAATTATGGTTAAGCTTCTTTTTTTGTTGGAACACTTATATTAGGTCCTATGTTTTTCTAAAGTCGTTTTAGCATATGAGGGAAGGTCTGTCTGCCTATGTAGGTAAAAAGGTGATTTAGCGAATTTCTAGTTTTGGAGAACCTCTAACCTAACTTAGAAGACATTATTGAGTGTTGGAATGAATTGTGCTCATGTATAACAAAGCATATATAGGGTTTCTTATTGTTGACCTTGAATAGTTTGAGATCGACATGCAGTTTTTTTGGGTATAATACATAAATGTGCACTTTAACTTGGCTTCGAATCACATTTATGCCCTTCAACTTTGGGTGTGCACAAGTAGACACTTAAACTTGTATAAAGTTGTACAGATAAACACACATGTTCTATATGTCATCCTACATGTTATTTTTTGTCCTACGTGGTGTCCTACGTGTATTGTGCCATTTAGGACTCATGTGTTTATTTATTTAAAAGTTTGATAGTTAAAGTGTCTGTTTGTGCATTATGAAAGTTGGAGGTCAAAGTTAAACTTTGAAGCCATGTTTAGGGTCCAATATATATATATATTATGCCCTTTTTTTGGGTGAACTATAGAATTTTGATATGTTAATCCCTACCTACTAGTATGGAAGGATTACCAACCAAGAAAACATATACAGTTTTATGGCCTGACTTGTTAGACAAGTAGACCTTTGGATTAAATTATATTCTTAAAAAATCAAATTGCTTACTTAAGACTCGTAGATAGAGTGCGTTCACCATATAGAACTATAGAGAGGTACTTTATCGGTGACTTGTCTATCTCATCATAATGATATGCATAGTGCTTTTACCAAAACCATGTCTGGTGCATTTTATTCCTTTTCTCATTCTTTGTTATATTGCTGATTTCTATCCATTGGTAACAGAAAATATTTGTTTTCTCCACATGCAGGTGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGTGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGCTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTGCAAAAGAACTGATACCACAGGTATGGAATACCTAATTCTGATTGGATATTTTATTTGCAGACTGTTGAGATTGTAGTTGTGATGTTTTTTCGAAAATGCTTGTGATGGCAGTTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATGGTAAGTTGTACTTTACGAATTGATTCTATGAAGGCTTCTGAGATGATAATGGATATGCTTGCGACCTTCTGAATTGATACTTCTTGTTCTTTGACTAAATCCACTTCAAATGTTTTCTTTTGCATAAAAAATGGGGTGGGGATAGGGGTTGGTCGATCTGTGATGGGATTTTATTCACTAAACAGTACCAACTAATTGCTAGTTAAATACAAAATCGCTAAAATGAACTGTCTCCCTTTCAACTGAAATTCATCATAGTATATAGTGCTTTGAGTTTTAAACTATGTGCTTCAATTCTTCCTTCAAAGCAGCATGAATCCTTTTTTCCCATACCACCCACAAGATGCATATTTTTATTCCAGACGTTCTTAATGTACAGTCACAAGAATTAGTTGCAGCGACATTTGTGCCAGAAAATGTGGTAAGACACATTCAATGGACCACCTACCTTTGACATTCTTAAGCCAAAATTTCACCTGCGTTTGGACAAAATAGATACTTCCTCTTGCCTGCTTGTATATGGTGGACTATATGGAAAGAGAGAAATGATGGATGTTTTGAAATAGGGACAACAACCTTCAGGAAGTGAAGCTTAAATGTATTTTGTTCTGTTTTTGGTGTACAAGTGTCTACTCCAATGAGACTGAGTCAATTGTAGATGGTTTAGGGTCCATCTAGTTCCTGGTTTAGCAATGGAAGGACTTCAATCTTTTTTCTTGTTTTTGTAAATATGGTTTTTCAGTACTACCTAAGTACTGACTGAAATACAATGTTAGGAAAAAAAAAAGAGATCAACAATCATGAAACAAGAGAAGGAATAAAATGCACCAGGCATGATTTTGGACCGGTACAGGGTTATATAAAGCACTATTGACAGCATTATGATGAGATAAACAGGTCACCAATTAAGTACCTCTTTATACTTGTATATTTATAGTACTTTACCCTCTAAATACAAATTAACTTACGATGAAAACAATAGAAAAAATATGTTTCTTGTGGGTGGCATGGAAAGATAACTATCCCTCCCTTTGAGCTTGTGAAGGCATCTTACAATGTTCTAGGCATTACCCACTAAACTTCAAACAGGCTTAGGAATATGTTTCGAGTCCACATGACTTCAGTGTCTTACAGAAAATTCTGTTCCCCACCCTCATATATGTAACATCTACCCAGTCAATCTGTGACAAGTTTACTGCATTGCAATCCAGCCCAAGCAGTGTATTCTAAAGATTGCCCCGAAGAGACATGGAGATGTTGACTACGTTATCCATAATATGTGGAACTATTGACATAGATTTGTTATTTATGACAATGAGATACCATCTATCAAAAAAGTTAAAGAGTTTTTTTTTTTTTAAAAAACAATTCGGCCATAATTGAAATCCCTGAGAATTGGAAACCTTATTTATGCAGACCAAAATTCTATTCAGGAGCCCTCTTGTATGTTGTTAACAAAGCCAAACCGATAAGAAGTTTCTTTCTCTCTTTTTCTGTTTTGCCTAATGTTTCACATGCTTCAGTTATCACATTATTTTGCTCTTGGTGCTATGTTATGCTTTCCATATTATTGCTATGACTTAGTTGCTATATCTTATTGACTGCTGTATTCGCTTTTGTAACTGCTTTGTTATGAGTTACTTGAGTCGAGGGTCTTTCAGGAACCTCTCTATCTCTCAAAGTAGAGGTAAGGTCTCCAAACACACTACCCTCCGCCGACCTCACTTGTTGGAATACACCGGGTATGTTGTTGTTGTTTTCACTTTAACCTTTTCATGTCCTTCACATAGATTATTCTTTATCAACTTCTTTTATTTCATCGGAACCTTCACCTTTTGAGTGGCATCTCATTCAAGTTAGTCCCCTGGAAGAATATTATTTTTGGGTTAAAGACTGCAATGTGGAAGCACTACATTGGAATAGTTGCTGCATTTTTTTTAAAAAAAATAGTAATGTTGTATTCCTCAGCATTAAGGGTATGCTGGTGACCTACATAAATTTTACATAGAGGGGCTCGGAAGGCTAATTCCAAAAATCCTAACATATCTACTAGTTGCTCTTCCTCTATACATTCCTGTTTACACCAAAAATACAAATATACAATGCAATTTTCTTTGACTTTCTGTATGGAGTTTGATTTGTTCTCATAGCATCTTCCATTTCTTTCCTTCCATACTGACAACCATATGTATAGTTGCTGCATTTTATTGGAATTTTGGAACTAGAGCAAATTGTTAAATGCTGAAATTTTCAATATTATTTATAATTTGCAAGTGTTGGGGTTATGCTGTTGGAATGAAGACACCTGATTAAAGAGCCCTTTGTTTATTTGTTGTGTATTTGAGTTATAACTAAACATTAATTTATTTTTCATTGGTTGTTAGAGTTTAAACCAATTACAAAGGAAATATGCAAGCTGCCCTCGTTCTTCTCCGCTGTCCTTTTTAAGAAGATCGATGTTGACGGCACTGGCGTCATAACCAGGTACATGTTTCTGTCTTTTTGAGTATGAAGATGATTCATTTACTTTGTGGATACACATCCCAAATCGGAAGTCCCAAATTCTAAGTGCAATCCAATATCCATCATCTTAAAATTTGAATCTGAGATTCAGTCCATAATCCTACAATTCAAACAGAAATCTCAAAAAATTGTATTCAGGTTCTGATTTCTATTTTCCCCAAACTATGCCACCTGAATCGCCTTAGGGGTGTGTTATATTTGAAATGAATATTTAAGTGGCAGAAAGAGAGCCCATGAAATGAAACCAAATGTATCAGAGTCACATGCAATGTGCCTGAGGCATTTCTGAATTGATGTGAAATATTTCTGGAGCGCTTGAGGAGTGAGTTGAAATGCAATTTGCTTCGCATGACTGCAGGGATGCCTTTGTTGATTATTGGATACACGGGAACATGTTGACAAAAGATATAGCAACTCAAATGTACACAATCTTGAAGCAGCCGGACCTTAGATACCTCGTGCAGGTGCTTTGTCTAGTTCCTGTTGATGATTAAAATTCCTTCTGATTTTCTGTGTCGTAATTCAGAAGATAATATGATTTTGGTTTGATTTATGATTCTGTGCGCACAAATCTTTTAAGGCACACTAAGGTTTTGTGGATTACTAGATTATCCTCTTCTTTTAAAATTATATGATGAGGATCCATATAGCTGTCCCCAACTTATTGGGACTCAGCGTAGTTGTTTGGAAAATAAATTGTCCTCTTCTTTCCAATGACTTCTATCAACTGGATTGCAGGATGACTTCAAACCCATTCTTCGGGAACTTTTGGCAACACA</genome_strand>
        <mrna_strand>AATGGCTTTCGCTTCCTGATACTGCCGCTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGTGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGCTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTGCAAAAGAACTGATACCACAG...........................................................................................TTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTAAACCAATTACAAAGGAAATATGCAAGCTGCCCTCGTTCTTCTCCGCTGTCCTTTTTAAGAAGATCGATGTTGACGGCACTGGCGTCATAACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCTTTGTTGATTATTGGATACACGGGAACATGTTGACAAAAGATATAGCAACTCAAATGTACACAATCTTGAAGCAGCCGGACCTTAGATACCTCGTGCAG..................................................................................................................................................................................................................................................................................GATGACTTCAAACCCATTCTTCGGGAACTTTTGGCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325052" ref_strand="+" ref_description="SGN-E325052 [cTOC-13-J15]">
      <seq>tttttaagaagatcgatgttgacggcactggcgtcataaccagggatgcctttgttgattattggatacacgggaacatgttgacaaaagatatagcaactcaaatgtacacaatcttgaagcagccggaccttagatacctcgtgcaggatgacttcaaaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="47003" stop="45568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46703" g_stop="46661" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46660" i_stop="46264" i_length="397">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.096" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46263" g_stop="46158" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="149" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46157" i_stop="45884" i_length="274">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45883" g_stop="45868" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="165" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E325052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>165</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46703" e_stop="46661"/>
          <exon e_start="46263" e_stop="46158"/>
          <exon e_start="45883" e_stop="45868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAAGAAGATCGATGTTGACGGCACTGGCGTCATAACCAGGTACATGTTTCTGTCTTTTTGAGTATGAAGATGATTCATTTACTTTGTGGATACACATCCCAAATCGGAAGTCCCAAATTCTAAGTGCAATCCAATATCCATCATCTTAAAATTTGAATCTGAGATTCAGTCCATAATCCTACAATTCAAACAGAAATCTCAAAAAATTGTATTCAGGTTCTGATTTCTATTTTCCCCAAACTATGCCACCTGAATCGCCTTAGGGGTGTGTTATATTTGAAATGAATATTTAAGTGGCAGAAAGAGAGCCCATGAAATGAAACCAAATGTATCAGAGTCACATGCAATGTGCCTGAGGCATTTCTGAATTGATGTGAAATATTTCTGGAGCGCTTGAGGAGTGAGTTGAAATGCAATTTGCTTCGCATGACTGCAGGGATGCCTTTGTTGATTATTGGATACACGGGAACATGTTGACAAAAGATATAGCAACTCAAATGTACACAATCTTGAAGCAGCCGGACCTTAGATACCTCGTGCAGGTGCTTTGTCTAGTTCCTGTTGATGATTAAAATTCCTTCTGATTTTCTGTGTCGTAATTCAGAAGATAATATGATTTTGGTTTGATTTATGATTCTGTGCGCACAAATCTTTTAAGGCACACTAAGGTTTTGTGGATTACTAGATTATCCTCTTCTTTTAAAATTATATGATGAGGATCCATATAGCTGTCCCCAACTTATTGGGACTCAGCGTAGTTGTTTGGAAAATAAATTGTCCTCTTCTTTCCAATGACTTCTATCAACTGGATTGCAGGATGACTTCAAACCCA</genome_strand>
        <mrna_strand>TTTTTAAGAAGATCGATGTTGACGGCACTGGCGTCATAACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCTTTGTTGATTATTGGATACACGGGAACATGTTGACAAAAGATATAGCAACTCAAATGTACACAATCTTGAAGCAGCCGGACCTTAGATACCTCGTGCAG..................................................................................................................................................................................................................................................................................GATGACTTCAAACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578009" ref_strand="+" ref_description="SGN-E578009 [LE08CG05]">
      <seq>ttgatttgatttttgaaaaaaaaagaaaaaagaaaagaggtatcgcgattcgcgatggatgtggattttaatggtgatgtagcgagtttggatgctgagcttttgcagttacctgagttgtctcctttggctattaaaacgaatccttttgttgccgagaagctatttgatcaatggctttcgcttcctgatactgccgctttggtgaaatctttgattaagaatgccaaaggtggcggtccattgaatgtgtctactacatcgtctgggacaaatgtcgtggcaactaattctttgccgtccatgtttcctgctggaagtacacctccactttctccaagaagctcatctggttcacctcgaatctcaaagcacagggctggaccctcttcattggggtctcctctgaaattaattaatgagcctgcaaaagaactgataccacagttttactttcaaaatggtcgcccccctccaaatgaattgaaggaacgctgtttgtttaggataaaccagttcttttatggtcatactgatgggctacaaatgaatgagtttaaaccaattacaaaggaaatatgcaagctgccctcgttcttctccgctgtcctttttaagaagatcgatgttgacggcactggcgtcataaccagngatgcctttgttgattattggatacacgggaacatgttgacaaaagatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="53907" stop="45913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53607" g_stop="53404" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53403" i_stop="49585" i_length="3819">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49584" g_stop="49342" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="447" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49341" i_stop="49251" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49250" g_stop="49145" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="553" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49144" i_stop="46761" i_length="2384">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46760" g_stop="46661" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="653" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46660" i_stop="46264" i_length="397">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.096" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46263" g_stop="46213" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="704" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E578009" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53607" e_stop="53404"/>
          <exon e_start="49584" e_stop="49342"/>
          <exon e_start="49250" e_stop="49145"/>
          <exon e_start="46760" e_stop="46661"/>
          <exon e_start="46263" e_stop="46213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTGATTTTTGAAAAAAAAAGAAAAAAGAAAAGAGGTATCGCGATTCGCGATGGATGTGGATTTTAATGGTGATGTAGCGAGTTTGGATGCTGAGCTTTTGCAGTTACCTGAGTTGTCTCCTTTGGCTATTAAAACGAATCCTTTTGTTGCCGAGAAGCTATTTGATCAATGGCTTTCGCTTCCTGATACTGCCGCTTTGGTAATTTCCTTATTTTCTATTTTTGCGACTTTTTTTTTTTGTTGATGTAGTAGGAGTTAGCTGTCAAAATTTGAATTTGGATTTGCTTGTACCTAGGTATACTTATTCGGAGATGTGTCAACCTGTACTGTGTGGGAGTACTTATTGTTTTATAGGTTACCACTGGTTTGGCGGTGTGCTGTATAAGGAAAAAACTGATCTTGGTGTAATACCCTGCACTACTAATAAAATGATTGGCTTCCAGTATAAACTCTGCATTAATGACACCTTCAAAACTTATGGTGGAATGTAAATGTTGTTTTATGTGAGAGAAAATACGGGAACAATAGATGTATTTGCAATACTAGGATAAGAGTACATGAAGTGTCTAAAAATACCCTTAAAACTTTATTATTGAGATTGCTATTGCAATCTGACATAACAATATATGTAATATTATCCTATTTGAGGGCACTAGGTGATAAGACTTGGGGTTAGATTACCTGGTAGTTGTGCTAGTGGAAGGTATTATGTATGCGGTAGAATAGTTGAGGGGTGCAATAACGATCAAGCTGTCTTTACAACATGGTAAACTTCACATTAGAATCCGTATGAACTACCCATTCATTAGTTAGGTGGCTGTTTGGCATATCCTTTTATTTTTGTTGAAGCTACTTTATCGTTTTACCAAGAGGGTTTCTTATGCTGTGAGTATGCATTACTCAGAGCATCACTTTTTGGGGTTTTTTCCACTTTCATAGTTCAATTATATGCAGAATTCTGGGGGTTACATCTTTTAATAACTAGTGTAAATGACCTGGCTCACCAATTGGTACCGAAAGAGAGCGTCACTTCTCTAGAACATTACCTACAAATACAATTGTCTAGCTATGCCGAGAAAACTATGGTAGCAATCCATGAATTCTATAGTATTCACGTACAATCTCAGAGAATTTCTCTAATTCTCTCAGAGATGGGAAACCTACATTTGTCATTATCTTACTCCAAAGAAGGAATTGGACAGGTTATCTTTGTATTAACTATCAAGATAATTAGTTACCATTGGTAAATTTTTTTAAATTAAAATTAACTATCAAGATAATTGGAAGTGATCAAATCATGGTATCTTCATCCAGTTAGAATTTTCATTTGGTCGGTGAAGCTGTTGGGAACAGAACGTTTCTTTGGGTAAAAAACCTTAGTACTTTATCTAAAGTCTCCAAAATGTAAAAAGGAGCAGTGTTCTGATAAGTTCAGAGATGCTTCCTTATTCTTTGACCACTTCAGCTAGTGACAGCTTCTTTTAGAGTCCTTGAAATGACCAACTGGGCTCTGAAGTGATTAAGAAACCGGGAGAGAGGAAAGTAATGCAGGAACAGATGGTTTATGGGCTTGGCGGACTTCTCATACACCACTGCAAGTGATTACTACCTTTCCTGCAGTTTATGGATGGCAGTCCAACCAAAGCATACCACTTATAGTGGAGCTTTATCCTGATAAAAAATTTACCCTGATTTAAAAAGCTTTAGTGGGGCTTTAATTTTCTTGAAGATTCTCTTGATAGTTACCTTTCCACCATTTTTGTGGTAAGGTAAATAATTTTATTAACAATTTTGAGAACCTCGTATACAAGACATACCAAAAAAGGAGAACCTTGACCATCATATGGTTCTCAATAAAAGAGGTTCAATCCTCTACAAACATGAAGACCAAAAGGAAACTAGAGACAAAGAACTACTTTGCAGTTTTATAAAAGCTTGCTCCATTCCTTCAAAAAGGCCCCCTTATTTCTCTCTTTCCAGATAACCCACATGATGGCTGGGGGGCCACTCTCCTTCCCCTTGGGCCTTTCTTCCTTCTCATATGAGTCCAACTTTGAAAAACCTCCTTCATTGTGCTTGGCATCACCCATTGCATCCGAATTAAATTAAAGCACCATGACCTTCTCATTTCCCTTGGGAGCCTATACAATTGTTTACCCTAAACCTTCTAGAAGTAAGAAACGTCATAGTGCATGGTAACTTGTGAAGAAAATTTGGAACTTTCATTTTTGATGTAGTAAATTTACGTCATTAGTCTACAACAGGCAGAGTTTATTAACCAGTAAAATGCTGAAACAATGGAAATAGAAGGCTTTAAAACTTATTGGATGGAAAAAGATGAACTCTTGACATTCCAAAGGAAAAAAGTAGTCAGTAAAGTTAGGAGTCTTAAAAGGACAAGAAGTGTGCTATATCTTCAACTGTTACAACAACAACAACTTCCACAAGAAGTGGACCTCCAAATGCATCAACTGACACAGAGAATAAAACCAAATAAATAGTTCCAGATTGTTTGGTTAATGAACTGAATAAATTCCAAATGCATAAGCAAGTAGGTTCTATGTGATGATTGAAGGTGTTAAACTGCAATGAGATAGACTCCAAATTACTTAGATAAATTGTCTCGAAAAACCACTCTTATCAAAGGCTCGCTTAACACTGATGAGGAACAGAACATGTTGAGCGCTTCCTCCTTGCATCACGGGCACTTCAGTGTCATCGTCAATATTCAAGGCTACAAGTCATACTTTTCCTTGCCAATGAGCGTAATCATGAGGAGGTGGCACTGAACAATTGATATTTTACTTTATCGTAATCTTTTTTCAATTTCTTGTCCATATATTTGATATTTTTTATTACAAATTATTTGTCTTGGACTACACATGCATATTTTTATTTTTCCTCCATTTGTGCCTTTCTTCTTAGGCCCACGCTTTATTTGCGATTTGTGCTTAAAGCATCAATGGACCTTTGAGTTTTTTTGCGCTTTTCAACTTCGAAAACTTTTGGAAAATGTGTAATTTATAACCAGGAAAAGCAGTTTTAGCTAAGTATAGAACATAATGGAAGCAAAGCTATACGAATTATGGTTAAGCTTCTTTTTTTGTTGGAACACTTATATTAGGTCCTATGTTTTTCTAAAGTCGTTTTAGCATATGAGGGAAGGTCTGTCTGCCTATGTAGGTAAAAAGGTGATTTAGCGAATTTCTAGTTTTGGAGAACCTCTAACCTAACTTAGAAGACATTATTGAGTGTTGGAATGAATTGTGCTCATGTATAACAAAGCATATATAGGGTTTCTTATTGTTGACCTTGAATAGTTTGAGATCGACATGCAGTTTTTTTGGGTATAATACATAAATGTGCACTTTAACTTGGCTTCGAATCACATTTATGCCCTTCAACTTTGGGTGTGCACAAGTAGACACTTAAACTTGTATAAAGTTGTACAGATAAACACACATGTTCTATATGTCATCCTACATGTTATTTTTTGTCCTACGTGGTGTCCTACGTGTATTGTGCCATTTAGGACTCATGTGTTTATTTATTTAAAAGTTTGATAGTTAAAGTGTCTGTTTGTGCATTATGAAAGTTGGAGGTCAAAGTTAAACTTTGAAGCCATGTTTAGGGTCCAATATATATATATATTATGCCCTTTTTTTGGGTGAACTATAGAATTTTGATATGTTAATCCCTACCTACTAGTATGGAAGGATTACCAACCAAGAAAACATATACAGTTTTATGGCCTGACTTGTTAGACAAGTAGACCTTTGGATTAAATTATATTCTTAAAAAATCAAATTGCTTACTTAAGACTCGTAGATAGAGTGCGTTCACCATATAGAACTATAGAGAGGTACTTTATCGGTGACTTGTCTATCTCATCATAATGATATGCATAGTGCTTTTACCAAAACCATGTCTGGTGCATTTTATTCCTTTTCTCATTCTTTGTTATATTGCTGATTTCTATCCATTGGTAACAGAAAATATTTGTTTTCTCCACATGCAGGTGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGTGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGCTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTGCAAAAGAACTGATACCACAGGTATGGAATACCTAATTCTGATTGGATATTTTATTTGCAGACTGTTGAGATTGTAGTTGTGATGTTTTTTCGAAAATGCTTGTGATGGCAGTTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATGGTAAGTTGTACTTTACGAATTGATTCTATGAAGGCTTCTGAGATGATAATGGATATGCTTGCGACCTTCTGAATTGATACTTCTTGTTCTTTGACTAAATCCACTTCAAATGTTTTCTTTTGCATAAAAAATGGGGTGGGGATAGGGGTTGGTCGATCTGTGATGGGATTTTATTCACTAAACAGTACCAACTAATTGCTAGTTAAATACAAAATCGCTAAAATGAACTGTCTCCCTTTCAACTGAAATTCATCATAGTATATAGTGCTTTGAGTTTTAAACTATGTGCTTCAATTCTTCCTTCAAAGCAGCATGAATCCTTTTTTCCCATACCACCCACAAGATGCATATTTTTATTCCAGACGTTCTTAATGTACAGTCACAAGAATTAGTTGCAGCGACATTTGTGCCAGAAAATGTGGTAAGACACATTCAATGGACCACCTACCTTTGACATTCTTAAGCCAAAATTTCACCTGCGTTTGGACAAAATAGATACTTCCTCTTGCCTGCTTGTATATGGTGGACTATATGGAAAGAGAGAAATGATGGATGTTTTGAAATAGGGACAACAACCTTCAGGAAGTGAAGCTTAAATGTATTTTGTTCTGTTTTTGGTGTACAAGTGTCTACTCCAATGAGACTGAGTCAATTGTAGATGGTTTAGGGTCCATCTAGTTCCTGGTTTAGCAATGGAAGGACTTCAATCTTTTTTCTTGTTTTTGTAAATATGGTTTTTCAGTACTACCTAAGTACTGACTGAAATACAATGTTAGGAAAAAAAAAAGAGATCAACAATCATGAAACAAGAGAAGGAATAAAATGCACCAGGCATGATTTTGGACCGGTACAGGGTTATATAAAGCACTATTGACAGCATTATGATGAGATAAACAGGTCACCAATTAAGTACCTCTTTATACTTGTATATTTATAGTACTTTACCCTCTAAATACAAATTAACTTACGATGAAAACAATAGAAAAAATATGTTTCTTGTGGGTGGCATGGAAAGATAACTATCCCTCCCTTTGAGCTTGTGAAGGCATCTTACAATGTTCTAGGCATTACCCACTAAACTTCAAACAGGCTTAGGAATATGTTTCGAGTCCACATGACTTCAGTGTCTTACAGAAAATTCTGTTCCCCACCCTCATATATGTAACATCTACCCAGTCAATCTGTGACAAGTTTACTGCATTGCAATCCAGCCCAAGCAGTGTATTCTAAAGATTGCCCCGAAGAGACATGGAGATGTTGACTACGTTATCCATAATATGTGGAACTATTGACATAGATTTGTTATTTATGACAATGAGATACCATCTATCAAAAAAGTTAAAGAGTTTTTTTTTTTTTAAAAAACAATTCGGCCATAATTGAAATCCCTGAGAATTGGAAACCTTATTTATGCAGACCAAAATTCTATTCAGGAGCCCTCTTGTATGTTGTTAACAAAGCCAAACCGATAAGAAGTTTCTTTCTCTCTTTTTCTGTTTTGCCTAATGTTTCACATGCTTCAGTTATCACATTATTTTGCTCTTGGTGCTATGTTATGCTTTCCATATTATTGCTATGACTTAGTTGCTATATCTTATTGACTGCTGTATTCGCTTTTGTAACTGCTTTGTTATGAGTTACTTGAGTCGAGGGTCTTTCAGGAACCTCTCTATCTCTCAAAGTAGAGGTAAGGTCTCCAAACACACTACCCTCCGCCGACCTCACTTGTTGGAATACACCGGGTATGTTGTTGTTGTTTTCACTTTAACCTTTTCATGTCCTTCACATAGATTATTCTTTATCAACTTCTTTTATTTCATCGGAACCTTCACCTTTTGAGTGGCATCTCATTCAAGTTAGTCCCCTGGAAGAATATTATTTTTGGGTTAAAGACTGCAATGTGGAAGCACTACATTGGAATAGTTGCTGCATTTTTTTTAAAAAAAATAGTAATGTTGTATTCCTCAGCATTAAGGGTATGCTGGTGACCTACATAAATTTTACATAGAGGGGCTCGGAAGGCTAATTCCAAAAATCCTAACATATCTACTAGTTGCTCTTCCTCTATACATTCCTGTTTACACCAAAAATACAAATATACAATGCAATTTTCTTTGACTTTCTGTATGGAGTTTGATTTGTTCTCATAGCATCTTCCATTTCTTTCCTTCCATACTGACAACCATATGTATAGTTGCTGCATTTTATTGGAATTTTGGAACTAGAGCAAATTGTTAAATGCTGAAATTTTCAATATTATTTATAATTTGCAAGTGTTGGGGTTATGCTGTTGGAATGAAGACACCTGATTAAAGAGCCCTTTGTTTATTTGTTGTGTATTTGAGTTATAACTAAACATTAATTTATTTTTCATTGGTTGTTAGAGTTTAAACCAATTACAAAGGAAATATGCAAGCTGCCCTCGTTCTTCTCCGCTGTCCTTTTTAAGAAGATCGATGTTGACGGCACTGGCGTCATAACCAGGTACATGTTTCTGTCTTTTTGAGTATGAAGATGATTCATTTACTTTGTGGATACACATCCCAAATCGGAAGTCCCAAATTCTAAGTGCAATCCAATATCCATCATCTTAAAATTTGAATCTGAGATTCAGTCCATAATCCTACAATTCAAACAGAAATCTCAAAAAATTGTATTCAGGTTCTGATTTCTATTTTCCCCAAACTATGCCACCTGAATCGCCTTAGGGGTGTGTTATATTTGAAATGAATATTTAAGTGGCAGAAAGAGAGCCCATGAAATGAAACCAAATGTATCAGAGTCACATGCAATGTGCCTGAGGCATTTCTGAATTGATGTGAAATATTTCTGGAGCGCTTGAGGAGTGAGTTGAAATGCAATTTGCTTCGCATGACTGCAGGGATGCCTTTGTTGATTATTGGATACACGGGAACATGTTGACAAAAGATAT</genome_strand>
        <mrna_strand>TTGATTTGATTTTTGAAAAAAAAAGAAAAAAGAAAAGAGGTATCGCGATTCGCGATGGATGTGGATTTTAATGGTGATGTAGCGAGTTTGGATGCTGAGCTTTTGCAGTTACCTGAGTTGTCTCCTTTGGCTATTAAAACGAATCCTTTTGTTGCCGAGAAGCTATTTGATCAATGGCTTTCGCTTCCTGATACTGCCGCTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGTGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGCTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTGCAAAAGAACTGATACCACAG...........................................................................................TTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTAAACCAATTACAAAGGAAATATGCAAGCTGCCCTCGTTCTTCTCCGCTGTCCTTTTTAAGAAGATCGATGTTGACGGCACTGGCGTCATAACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................NGATGCCTTTGTTGATTATTGGATACACGGGAACATGTTGACAAAAGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252732" ref_strand="+" ref_description="SGN-E252732 [cLEG-16-B21]">
      <seq>aattaattaatgagccctgcaaaagaactgatcccacagttttactttcaaaatggtcgcccccctccaaatgaattgaaggaaccgctgtttgtttaggataaaccagttcttttatggtcatactgatgggctacaaatgaatgagtttaaaccaattacaaaggaaatatgcaactgctgttcttctccgctgtcctttttaagaagatcgatgttgacggcactggcgtcataaccagggatgcctttgttgattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="49679" stop="45945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49379" g_stop="49342" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49341" i_stop="49251" i_length="91">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49250" g_stop="49145" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="146" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49144" i_stop="46761" i_length="2384">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46760" g_stop="46661" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="242" r_length="96" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46660" i_stop="46264" i_length="397">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.096" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46263" g_stop="46245" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="261" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E252732" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49379" e_stop="49342"/>
          <exon e_start="49250" e_stop="49145"/>
          <exon e_start="46760" e_stop="46661"/>
          <exon e_start="46263" e_stop="46245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAATTAATGAG-CCTGCAAAAGAACTGATACCACAGGTATGGAATACCTAATTCTGATTGGATATTTTATTTGCAGACTGTTGAGATTGTAGTTGTGATGTTTTTTCGAAAATGCTTGTGATGGCAGTTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAA-CGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATGGTAAGTTGTACTTTACGAATTGATTCTATGAAGGCTTCTGAGATGATAATGGATATGCTTGCGACCTTCTGAATTGATACTTCTTGTTCTTTGACTAAATCCACTTCAAATGTTTTCTTTTGCATAAAAAATGGGGTGGGGATAGGGGTTGGTCGATCTGTGATGGGATTTTATTCACTAAACAGTACCAACTAATTGCTAGTTAAATACAAAATCGCTAAAATGAACTGTCTCCCTTTCAACTGAAATTCATCATAGTATATAGTGCTTTGAGTTTTAAACTATGTGCTTCAATTCTTCCTTCAAAGCAGCATGAATCCTTTTTTCCCATACCACCCACAAGATGCATATTTTTATTCCAGACGTTCTTAATGTACAGTCACAAGAATTAGTTGCAGCGACATTTGTGCCAGAAAATGTGGTAAGACACATTCAATGGACCACCTACCTTTGACATTCTTAAGCCAAAATTTCACCTGCGTTTGGACAAAATAGATACTTCCTCTTGCCTGCTTGTATATGGTGGACTATATGGAAAGAGAGAAATGATGGATGTTTTGAAATAGGGACAACAACCTTCAGGAAGTGAAGCTTAAATGTATTTTGTTCTGTTTTTGGTGTACAAGTGTCTACTCCAATGAGACTGAGTCAATTGTAGATGGTTTAGGGTCCATCTAGTTCCTGGTTTAGCAATGGAAGGACTTCAATCTTTTTTCTTGTTTTTGTAAATATGGTTTTTCAGTACTACCTAAGTACTGACTGAAATACAATGTTAGGAAAAAAAAAAGAGATCAACAATCATGAAACAAGAGAAGGAATAAAATGCACCAGGCATGATTTTGGACCGGTACAGGGTTATATAAAGCACTATTGACAGCATTATGATGAGATAAACAGGTCACCAATTAAGTACCTCTTTATACTTGTATATTTATAGTACTTTACCCTCTAAATACAAATTAACTTACGATGAAAACAATAGAAAAAATATGTTTCTTGTGGGTGGCATGGAAAGATAACTATCCCTCCCTTTGAGCTTGTGAAGGCATCTTACAATGTTCTAGGCATTACCCACTAAACTTCAAACAGGCTTAGGAATATGTTTCGAGTCCACATGACTTCAGTGTCTTACAGAAAATTCTGTTCCCCACCCTCATATATGTAACATCTACCCAGTCAATCTGTGACAAGTTTACTGCATTGCAATCCAGCCCAAGCAGTGTATTCTAAAGATTGCCCCGAAGAGACATGGAGATGTTGACTACGTTATCCATAATATGTGGAACTATTGACATAGATTTGTTATTTATGACAATGAGATACCATCTATCAAAAAAGTTAAAGAGTTTTTTTTTTTTTAAAAAACAATTCGGCCATAATTGAAATCCCTGAGAATTGGAAACCTTATTTATGCAGACCAAAATTCTATTCAGGAGCCCTCTTGTATGTTGTTAACAAAGCCAAACCGATAAGAAGTTTCTTTCTCTCTTTTTCTGTTTTGCCTAATGTTTCACATGCTTCAGTTATCACATTATTTTGCTCTTGGTGCTATGTTATGCTTTCCATATTATTGCTATGACTTAGTTGCTATATCTTATTGACTGCTGTATTCGCTTTTGTAACTGCTTTGTTATGAGTTACTTGAGTCGAGGGTCTTTCAGGAACCTCTCTATCTCTCAAAGTAGAGGTAAGGTCTCCAAACACACTACCCTCCGCCGACCTCACTTGTTGGAATACACCGGGTATGTTGTTGTTGTTTTCACTTTAACCTTTTCATGTCCTTCACATAGATTATTCTTTATCAACTTCTTTTATTTCATCGGAACCTTCACCTTTTGAGTGGCATCTCATTCAAGTTAGTCCCCTGGAAGAATATTATTTTTGGGTTAAAGACTGCAATGTGGAAGCACTACATTGGAATAGTTGCTGCATTTTTTTTAAAAAAAATAGTAATGTTGTATTCCTCAGCATTAAGGGTATGCTGGTGACCTACATAAATTTTACATAGAGGGGCTCGGAAGGCTAATTCCAAAAATCCTAACATATCTACTAGTTGCTCTTCCTCTATACATTCCTGTTTACACCAAAAATACAAATATACAATGCAATTTTCTTTGACTTTCTGTATGGAGTTTGATTTGTTCTCATAGCATCTTCCATTTCTTTCCTTCCATACTGACAACCATATGTATAGTTGCTGCATTTTATTGGAATTTTGGAACTAGAGCAAATTGTTAAATGCTGAAATTTTCAATATTATTTATAATTTGCAAGTGTTGGGGTTATGCTGTTGGAATGAAGACACCTGATTAAAGAGCCCTTTGTTTATTTGTTGTGTATTTGAGTTATAACTAAACATTAATTTATTTTTCATTGGTTGTTAGAGTTTAAACCAATTACAAAGGAAATATGCAAGCTGCCCTCGTTCTTCTCCGCTGTCCTTTTTAAGAAGATCGATGTTGACGGCACTGGCGTCATAACCAGGTACATGTTTCTGTCTTTTTGAGTATGAAGATGATTCATTTACTTTGTGGATACACATCCCAAATCGGAAGTCCCAAATTCTAAGTGCAATCCAATATCCATCATCTTAAAATTTGAATCTGAGATTCAGTCCATAATCCTACAATTCAAACAGAAATCTCAAAAAATTGTATTCAGGTTCTGATTTCTATTTTCCCCAAACTATGCCACCTGAATCGCCTTAGGGGTGTGTTATATTTGAAATGAATATTTAAGTGGCAGAAAGAGAGCCCATGAAATGAAACCAAATGTATCAGAGTCACATGCAATGTGCCTGAGGCATTTCTGAATTGATGTGAAATATTTCTGGAGCGCTTGAGGAGTGAGTTGAAATGCAATTTGCTTCGCATGACTGCAGGGATGCCTTTGTTGATTAT</genome_strand>
        <mrna_strand>AATTAATTAATGAGCCCTGCAAAAGAACTGATCCCACAG...........................................................................................TTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACCGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTAAACCAATTACAAAGGAAATATGCAA-CTG--CT-GTTCTTCTCCGCTGTCCTTTTTAAGAAGATCGATGTTGACGGCACTGGCGTCATAACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................GGATGCCTTTGTTGATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208409" ref_strand="+" ref_description="SGN-E208409 [cLEC-37-H23]">
      <seq>tttgatcaatggctttcgcttcctgatactgccgctttggtgaaatctttgattaagaatgccaaaggtggcggtccattgaatgtgtctactacatcgtctgggacaaatgtcgtggcaactaattctttgccgtccatgtttcctgctggaagtacacctccactttctccaagaagctcatctggttcacctcgaatctcaaagcacagggctggaccctcttcattggggtctcctctgaaattaattaatgagcctgcaaaagaactgataccacagttttactttcaaaatggtcgcccccctccaaatgaattgaaggaacgctgtttgtttaggataaaccagttcttttatggtcatactgatgggctacaaatgaatgagtttaaaccaattacaaaggaaatatgcaagctgccctcgttcttctccgctgtcctttttaagaagatcgatgttgacggcactggcgtcataaccagggatgcctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="53742" stop="46358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53442" g_stop="53404" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53403" i_stop="49585" i_length="3819">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49584" g_stop="49342" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="282" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49341" i_stop="49251" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49250" g_stop="49145" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="388" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49144" i_stop="46761" i_length="2384">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46760" g_stop="46661" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="488" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E208409" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53442" e_stop="53404"/>
          <exon e_start="49584" e_stop="49342"/>
          <exon e_start="49250" e_stop="49145"/>
          <exon e_start="46760" e_stop="46661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCAATGGCTTTCGCTTCCTGATACTGCCGCTTTGGTAATTTCCTTATTTTCTATTTTTGCGACTTTTTTTTTTTGTTGATGTAGTAGGAGTTAGCTGTCAAAATTTGAATTTGGATTTGCTTGTACCTAGGTATACTTATTCGGAGATGTGTCAACCTGTACTGTGTGGGAGTACTTATTGTTTTATAGGTTACCACTGGTTTGGCGGTGTGCTGTATAAGGAAAAAACTGATCTTGGTGTAATACCCTGCACTACTAATAAAATGATTGGCTTCCAGTATAAACTCTGCATTAATGACACCTTCAAAACTTATGGTGGAATGTAAATGTTGTTTTATGTGAGAGAAAATACGGGAACAATAGATGTATTTGCAATACTAGGATAAGAGTACATGAAGTGTCTAAAAATACCCTTAAAACTTTATTATTGAGATTGCTATTGCAATCTGACATAACAATATATGTAATATTATCCTATTTGAGGGCACTAGGTGATAAGACTTGGGGTTAGATTACCTGGTAGTTGTGCTAGTGGAAGGTATTATGTATGCGGTAGAATAGTTGAGGGGTGCAATAACGATCAAGCTGTCTTTACAACATGGTAAACTTCACATTAGAATCCGTATGAACTACCCATTCATTAGTTAGGTGGCTGTTTGGCATATCCTTTTATTTTTGTTGAAGCTACTTTATCGTTTTACCAAGAGGGTTTCTTATGCTGTGAGTATGCATTACTCAGAGCATCACTTTTTGGGGTTTTTTCCACTTTCATAGTTCAATTATATGCAGAATTCTGGGGGTTACATCTTTTAATAACTAGTGTAAATGACCTGGCTCACCAATTGGTACCGAAAGAGAGCGTCACTTCTCTAGAACATTACCTACAAATACAATTGTCTAGCTATGCCGAGAAAACTATGGTAGCAATCCATGAATTCTATAGTATTCACGTACAATCTCAGAGAATTTCTCTAATTCTCTCAGAGATGGGAAACCTACATTTGTCATTATCTTACTCCAAAGAAGGAATTGGACAGGTTATCTTTGTATTAACTATCAAGATAATTAGTTACCATTGGTAAATTTTTTTAAATTAAAATTAACTATCAAGATAATTGGAAGTGATCAAATCATGGTATCTTCATCCAGTTAGAATTTTCATTTGGTCGGTGAAGCTGTTGGGAACAGAACGTTTCTTTGGGTAAAAAACCTTAGTACTTTATCTAAAGTCTCCAAAATGTAAAAAGGAGCAGTGTTCTGATAAGTTCAGAGATGCTTCCTTATTCTTTGACCACTTCAGCTAGTGACAGCTTCTTTTAGAGTCCTTGAAATGACCAACTGGGCTCTGAAGTGATTAAGAAACCGGGAGAGAGGAAAGTAATGCAGGAACAGATGGTTTATGGGCTTGGCGGACTTCTCATACACCACTGCAAGTGATTACTACCTTTCCTGCAGTTTATGGATGGCAGTCCAACCAAAGCATACCACTTATAGTGGAGCTTTATCCTGATAAAAAATTTACCCTGATTTAAAAAGCTTTAGTGGGGCTTTAATTTTCTTGAAGATTCTCTTGATAGTTACCTTTCCACCATTTTTGTGGTAAGGTAAATAATTTTATTAACAATTTTGAGAACCTCGTATACAAGACATACCAAAAAAGGAGAACCTTGACCATCATATGGTTCTCAATAAAAGAGGTTCAATCCTCTACAAACATGAAGACCAAAAGGAAACTAGAGACAAAGAACTACTTTGCAGTTTTATAAAAGCTTGCTCCATTCCTTCAAAAAGGCCCCCTTATTTCTCTCTTTCCAGATAACCCACATGATGGCTGGGGGGCCACTCTCCTTCCCCTTGGGCCTTTCTTCCTTCTCATATGAGTCCAACTTTGAAAAACCTCCTTCATTGTGCTTGGCATCACCCATTGCATCCGAATTAAATTAAAGCACCATGACCTTCTCATTTCCCTTGGGAGCCTATACAATTGTTTACCCTAAACCTTCTAGAAGTAAGAAACGTCATAGTGCATGGTAACTTGTGAAGAAAATTTGGAACTTTCATTTTTGATGTAGTAAATTTACGTCATTAGTCTACAACAGGCAGAGTTTATTAACCAGTAAAATGCTGAAACAATGGAAATAGAAGGCTTTAAAACTTATTGGATGGAAAAAGATGAACTCTTGACATTCCAAAGGAAAAAAGTAGTCAGTAAAGTTAGGAGTCTTAAAAGGACAAGAAGTGTGCTATATCTTCAACTGTTACAACAACAACAACTTCCACAAGAAGTGGACCTCCAAATGCATCAACTGACACAGAGAATAAAACCAAATAAATAGTTCCAGATTGTTTGGTTAATGAACTGAATAAATTCCAAATGCATAAGCAAGTAGGTTCTATGTGATGATTGAAGGTGTTAAACTGCAATGAGATAGACTCCAAATTACTTAGATAAATTGTCTCGAAAAACCACTCTTATCAAAGGCTCGCTTAACACTGATGAGGAACAGAACATGTTGAGCGCTTCCTCCTTGCATCACGGGCACTTCAGTGTCATCGTCAATATTCAAGGCTACAAGTCATACTTTTCCTTGCCAATGAGCGTAATCATGAGGAGGTGGCACTGAACAATTGATATTTTACTTTATCGTAATCTTTTTTCAATTTCTTGTCCATATATTTGATATTTTTTATTACAAATTATTTGTCTTGGACTACACATGCATATTTTTATTTTTCCTCCATTTGTGCCTTTCTTCTTAGGCCCACGCTTTATTTGCGATTTGTGCTTAAAGCATCAATGGACCTTTGAGTTTTTTTGCGCTTTTCAACTTCGAAAACTTTTGGAAAATGTGTAATTTATAACCAGGAAAAGCAGTTTTAGCTAAGTATAGAACATAATGGAAGCAAAGCTATACGAATTATGGTTAAGCTTCTTTTTTTGTTGGAACACTTATATTAGGTCCTATGTTTTTCTAAAGTCGTTTTAGCATATGAGGGAAGGTCTGTCTGCCTATGTAGGTAAAAAGGTGATTTAGCGAATTTCTAGTTTTGGAGAACCTCTAACCTAACTTAGAAGACATTATTGAGTGTTGGAATGAATTGTGCTCATGTATAACAAAGCATATATAGGGTTTCTTATTGTTGACCTTGAATAGTTTGAGATCGACATGCAGTTTTTTTGGGTATAATACATAAATGTGCACTTTAACTTGGCTTCGAATCACATTTATGCCCTTCAACTTTGGGTGTGCACAAGTAGACACTTAAACTTGTATAAAGTTGTACAGATAAACACACATGTTCTATATGTCATCCTACATGTTATTTTTTGTCCTACGTGGTGTCCTACGTGTATTGTGCCATTTAGGACTCATGTGTTTATTTATTTAAAAGTTTGATAGTTAAAGTGTCTGTTTGTGCATTATGAAAGTTGGAGGTCAAAGTTAAACTTTGAAGCCATGTTTAGGGTCCAATATATATATATATTATGCCCTTTTTTTGGGTGAACTATAGAATTTTGATATGTTAATCCCTACCTACTAGTATGGAAGGATTACCAACCAAGAAAACATATACAGTTTTATGGCCTGACTTGTTAGACAAGTAGACCTTTGGATTAAATTATATTCTTAAAAAATCAAATTGCTTACTTAAGACTCGTAGATAGAGTGCGTTCACCATATAGAACTATAGAGAGGTACTTTATCGGTGACTTGTCTATCTCATCATAATGATATGCATAGTGCTTTTACCAAAACCATGTCTGGTGCATTTTATTCCTTTTCTCATTCTTTGTTATATTGCTGATTTCTATCCATTGGTAACAGAAAATATTTGTTTTCTCCACATGCAGGTGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGTGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGCTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTGCAAAAGAACTGATACCACAGGTATGGAATACCTAATTCTGATTGGATATTTTATTTGCAGACTGTTGAGATTGTAGTTGTGATGTTTTTTCGAAAATGCTTGTGATGGCAGTTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATGGTAAGTTGTACTTTACGAATTGATTCTATGAAGGCTTCTGAGATGATAATGGATATGCTTGCGACCTTCTGAATTGATACTTCTTGTTCTTTGACTAAATCCACTTCAAATGTTTTCTTTTGCATAAAAAATGGGGTGGGGATAGGGGTTGGTCGATCTGTGATGGGATTTTATTCACTAAACAGTACCAACTAATTGCTAGTTAAATACAAAATCGCTAAAATGAACTGTCTCCCTTTCAACTGAAATTCATCATAGTATATAGTGCTTTGAGTTTTAAACTATGTGCTTCAATTCTTCCTTCAAAGCAGCATGAATCCTTTTTTCCCATACCACCCACAAGATGCATATTTTTATTCCAGACGTTCTTAATGTACAGTCACAAGAATTAGTTGCAGCGACATTTGTGCCAGAAAATGTGGTAAGACACATTCAATGGACCACCTACCTTTGACATTCTTAAGCCAAAATTTCACCTGCGTTTGGACAAAATAGATACTTCCTCTTGCCTGCTTGTATATGGTGGACTATATGGAAAGAGAGAAATGATGGATGTTTTGAAATAGGGACAACAACCTTCAGGAAGTGAAGCTTAAATGTATTTTGTTCTGTTTTTGGTGTACAAGTGTCTACTCCAATGAGACTGAGTCAATTGTAGATGGTTTAGGGTCCATCTAGTTCCTGGTTTAGCAATGGAAGGACTTCAATCTTTTTTCTTGTTTTTGTAAATATGGTTTTTCAGTACTACCTAAGTACTGACTGAAATACAATGTTAGGAAAAAAAAAAGAGATCAACAATCATGAAACAAGAGAAGGAATAAAATGCACCAGGCATGATTTTGGACCGGTACAGGGTTATATAAAGCACTATTGACAGCATTATGATGAGATAAACAGGTCACCAATTAAGTACCTCTTTATACTTGTATATTTATAGTACTTTACCCTCTAAATACAAATTAACTTACGATGAAAACAATAGAAAAAATATGTTTCTTGTGGGTGGCATGGAAAGATAACTATCCCTCCCTTTGAGCTTGTGAAGGCATCTTACAATGTTCTAGGCATTACCCACTAAACTTCAAACAGGCTTAGGAATATGTTTCGAGTCCACATGACTTCAGTGTCTTACAGAAAATTCTGTTCCCCACCCTCATATATGTAACATCTACCCAGTCAATCTGTGACAAGTTTACTGCATTGCAATCCAGCCCAAGCAGTGTATTCTAAAGATTGCCCCGAAGAGACATGGAGATGTTGACTACGTTATCCATAATATGTGGAACTATTGACATAGATTTGTTATTTATGACAATGAGATACCATCTATCAAAAAAGTTAAAGAGTTTTTTTTTTTTTAAAAAACAATTCGGCCATAATTGAAATCCCTGAGAATTGGAAACCTTATTTATGCAGACCAAAATTCTATTCAGGAGCCCTCTTGTATGTTGTTAACAAAGCCAAACCGATAAGAAGTTTCTTTCTCTCTTTTTCTGTTTTGCCTAATGTTTCACATGCTTCAGTTATCACATTATTTTGCTCTTGGTGCTATGTTATGCTTTCCATATTATTGCTATGACTTAGTTGCTATATCTTATTGACTGCTGTATTCGCTTTTGTAACTGCTTTGTTATGAGTTACTTGAGTCGAGGGTCTTTCAGGAACCTCTCTATCTCTCAAAGTAGAGGTAAGGTCTCCAAACACACTACCCTCCGCCGACCTCACTTGTTGGAATACACCGGGTATGTTGTTGTTGTTTTCACTTTAACCTTTTCATGTCCTTCACATAGATTATTCTTTATCAACTTCTTTTATTTCATCGGAACCTTCACCTTTTGAGTGGCATCTCATTCAAGTTAGTCCCCTGGAAGAATATTATTTTTGGGTTAAAGACTGCAATGTGGAAGCACTACATTGGAATAGTTGCTGCATTTTTTTTAAAAAAAATAGTAATGTTGTATTCCTCAGCATTAAGGGTATGCTGGTGACCTACATAAATTTTACATAGAGGGGCTCGGAAGGCTAATTCCAAAAATCCTAACATATCTACTAGTTGCTCTTCCTCTATACATTCCTGTTTACACCAAAAATACAAATATACAATGCAATTTTCTTTGACTTTCTGTATGGAGTTTGATTTGTTCTCATAGCATCTTCCATTTCTTTCCTTCCATACTGACAACCATATGTATAGTTGCTGCATTTTATTGGAATTTTGGAACTAGAGCAAATTGTTAAATGCTGAAATTTTCAATATTATTTATAATTTGCAAGTGTTGGGGTTATGCTGTTGGAATGAAGACACCTGATTAAAGAGCCCTTTGTTTATTTGTTGTGTATTTGAGTTATAACTAAACATTAATTTATTTTTCATTGGTTGTTAGAGTTTAAACCAATTACAAAGGAAATATGCAAGCTGCCCTCGTTCTTCTCCGCTGTCCTTTTTAAGAAGATCGATGTTGACGGCACTGGCGTCATAACCAG</genome_strand>
        <mrna_strand>TTTGATCAATGGCTTTCGCTTCCTGATACTGCCGCTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGTGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGCTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTGCAAAAGAACTGATACCACAG...........................................................................................TTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTAAACCAATTACAAAGGAAATATGCAAGCTGCCCTCGTTCTTCTCCGCTGTCCTTTTTAAGAAGATCGATGTTGACGGCACTGGCGTCATAACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210505" ref_strand="+" ref_description="SGN-E210505 [cLEC-35-D23]">
      <seq>tttgatttgatttttgaaaaaaaaagaaaaaagaaaagaggtatcgcgattctttaaggaataggaatttaatggtgatgtagcgagtttggatgctgagcttttgcagttacctgagttgtctcctttggctattaaaacgaatccttttgttgccgagaagctatttgatcaatggctttcgcttcctgatactgccgctttggtgaaatctttgattaagaatgccaaaggtggcggtccattgaatgtgtctactacatcgtctgggacaaatgtcgtggcaactaattctttgccgtccatgtttcctgctggaagtacacctccactttctccaagaagctcatctggttcacctcgaatctcaaagcacagggctggaccctcttcattggggtctcctctgaaattaattaatgagcctgcaaaagaactgataccacagttttactttcaaaatggtcgcccccctccaaatgaattgaaggaacgctgtttgtttaggataaaccagttcttttatggtcatactgatgggctacaaatgaatgagtttaaaccaattacaaaggaaatatgcaagctgccctcgttcttctccgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="53908" stop="46407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53608" g_stop="53404" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53403" i_stop="49585" i_length="3819">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49584" g_stop="49342" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="448" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49341" i_stop="49251" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49250" g_stop="49145" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="554" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49144" i_stop="46761" i_length="2384">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46760" g_stop="46707" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="608" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E210505" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53608" e_stop="53404"/>
          <exon e_start="49584" e_stop="49342"/>
          <exon e_start="49250" e_stop="49145"/>
          <exon e_start="46760" e_stop="46707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTTGATTTTTGAAAAAAAAAGAAAAAAGAAAAGAGGTATCGCGATTCGCGATGGATGTGGATTTTAATGGTGATGTAGCGAGTTTGGATGCTGAGCTTTTGCAGTTACCTGAGTTGTCTCCTTTGGCTATTAAAACGAATCCTTTTGTTGCCGAGAAGCTATTTGATCAATGGCTTTCGCTTCCTGATACTGCCGCTTTGGTAATTTCCTTATTTTCTATTTTTGCGACTTTTTTTTTTTGTTGATGTAGTAGGAGTTAGCTGTCAAAATTTGAATTTGGATTTGCTTGTACCTAGGTATACTTATTCGGAGATGTGTCAACCTGTACTGTGTGGGAGTACTTATTGTTTTATAGGTTACCACTGGTTTGGCGGTGTGCTGTATAAGGAAAAAACTGATCTTGGTGTAATACCCTGCACTACTAATAAAATGATTGGCTTCCAGTATAAACTCTGCATTAATGACACCTTCAAAACTTATGGTGGAATGTAAATGTTGTTTTATGTGAGAGAAAATACGGGAACAATAGATGTATTTGCAATACTAGGATAAGAGTACATGAAGTGTCTAAAAATACCCTTAAAACTTTATTATTGAGATTGCTATTGCAATCTGACATAACAATATATGTAATATTATCCTATTTGAGGGCACTAGGTGATAAGACTTGGGGTTAGATTACCTGGTAGTTGTGCTAGTGGAAGGTATTATGTATGCGGTAGAATAGTTGAGGGGTGCAATAACGATCAAGCTGTCTTTACAACATGGTAAACTTCACATTAGAATCCGTATGAACTACCCATTCATTAGTTAGGTGGCTGTTTGGCATATCCTTTTATTTTTGTTGAAGCTACTTTATCGTTTTACCAAGAGGGTTTCTTATGCTGTGAGTATGCATTACTCAGAGCATCACTTTTTGGGGTTTTTTCCACTTTCATAGTTCAATTATATGCAGAATTCTGGGGGTTACATCTTTTAATAACTAGTGTAAATGACCTGGCTCACCAATTGGTACCGAAAGAGAGCGTCACTTCTCTAGAACATTACCTACAAATACAATTGTCTAGCTATGCCGAGAAAACTATGGTAGCAATCCATGAATTCTATAGTATTCACGTACAATCTCAGAGAATTTCTCTAATTCTCTCAGAGATGGGAAACCTACATTTGTCATTATCTTACTCCAAAGAAGGAATTGGACAGGTTATCTTTGTATTAACTATCAAGATAATTAGTTACCATTGGTAAATTTTTTTAAATTAAAATTAACTATCAAGATAATTGGAAGTGATCAAATCATGGTATCTTCATCCAGTTAGAATTTTCATTTGGTCGGTGAAGCTGTTGGGAACAGAACGTTTCTTTGGGTAAAAAACCTTAGTACTTTATCTAAAGTCTCCAAAATGTAAAAAGGAGCAGTGTTCTGATAAGTTCAGAGATGCTTCCTTATTCTTTGACCACTTCAGCTAGTGACAGCTTCTTTTAGAGTCCTTGAAATGACCAACTGGGCTCTGAAGTGATTAAGAAACCGGGAGAGAGGAAAGTAATGCAGGAACAGATGGTTTATGGGCTTGGCGGACTTCTCATACACCACTGCAAGTGATTACTACCTTTCCTGCAGTTTATGGATGGCAGTCCAACCAAAGCATACCACTTATAGTGGAGCTTTATCCTGATAAAAAATTTACCCTGATTTAAAAAGCTTTAGTGGGGCTTTAATTTTCTTGAAGATTCTCTTGATAGTTACCTTTCCACCATTTTTGTGGTAAGGTAAATAATTTTATTAACAATTTTGAGAACCTCGTATACAAGACATACCAAAAAAGGAGAACCTTGACCATCATATGGTTCTCAATAAAAGAGGTTCAATCCTCTACAAACATGAAGACCAAAAGGAAACTAGAGACAAAGAACTACTTTGCAGTTTTATAAAAGCTTGCTCCATTCCTTCAAAAAGGCCCCCTTATTTCTCTCTTTCCAGATAACCCACATGATGGCTGGGGGGCCACTCTCCTTCCCCTTGGGCCTTTCTTCCTTCTCATATGAGTCCAACTTTGAAAAACCTCCTTCATTGTGCTTGGCATCACCCATTGCATCCGAATTAAATTAAAGCACCATGACCTTCTCATTTCCCTTGGGAGCCTATACAATTGTTTACCCTAAACCTTCTAGAAGTAAGAAACGTCATAGTGCATGGTAACTTGTGAAGAAAATTTGGAACTTTCATTTTTGATGTAGTAAATTTACGTCATTAGTCTACAACAGGCAGAGTTTATTAACCAGTAAAATGCTGAAACAATGGAAATAGAAGGCTTTAAAACTTATTGGATGGAAAAAGATGAACTCTTGACATTCCAAAGGAAAAAAGTAGTCAGTAAAGTTAGGAGTCTTAAAAGGACAAGAAGTGTGCTATATCTTCAACTGTTACAACAACAACAACTTCCACAAGAAGTGGACCTCCAAATGCATCAACTGACACAGAGAATAAAACCAAATAAATAGTTCCAGATTGTTTGGTTAATGAACTGAATAAATTCCAAATGCATAAGCAAGTAGGTTCTATGTGATGATTGAAGGTGTTAAACTGCAATGAGATAGACTCCAAATTACTTAGATAAATTGTCTCGAAAAACCACTCTTATCAAAGGCTCGCTTAACACTGATGAGGAACAGAACATGTTGAGCGCTTCCTCCTTGCATCACGGGCACTTCAGTGTCATCGTCAATATTCAAGGCTACAAGTCATACTTTTCCTTGCCAATGAGCGTAATCATGAGGAGGTGGCACTGAACAATTGATATTTTACTTTATCGTAATCTTTTTTCAATTTCTTGTCCATATATTTGATATTTTTTATTACAAATTATTTGTCTTGGACTACACATGCATATTTTTATTTTTCCTCCATTTGTGCCTTTCTTCTTAGGCCCACGCTTTATTTGCGATTTGTGCTTAAAGCATCAATGGACCTTTGAGTTTTTTTGCGCTTTTCAACTTCGAAAACTTTTGGAAAATGTGTAATTTATAACCAGGAAAAGCAGTTTTAGCTAAGTATAGAACATAATGGAAGCAAAGCTATACGAATTATGGTTAAGCTTCTTTTTTTGTTGGAACACTTATATTAGGTCCTATGTTTTTCTAAAGTCGTTTTAGCATATGAGGGAAGGTCTGTCTGCCTATGTAGGTAAAAAGGTGATTTAGCGAATTTCTAGTTTTGGAGAACCTCTAACCTAACTTAGAAGACATTATTGAGTGTTGGAATGAATTGTGCTCATGTATAACAAAGCATATATAGGGTTTCTTATTGTTGACCTTGAATAGTTTGAGATCGACATGCAGTTTTTTTGGGTATAATACATAAATGTGCACTTTAACTTGGCTTCGAATCACATTTATGCCCTTCAACTTTGGGTGTGCACAAGTAGACACTTAAACTTGTATAAAGTTGTACAGATAAACACACATGTTCTATATGTCATCCTACATGTTATTTTTTGTCCTACGTGGTGTCCTACGTGTATTGTGCCATTTAGGACTCATGTGTTTATTTATTTAAAAGTTTGATAGTTAAAGTGTCTGTTTGTGCATTATGAAAGTTGGAGGTCAAAGTTAAACTTTGAAGCCATGTTTAGGGTCCAATATATATATATATTATGCCCTTTTTTTGGGTGAACTATAGAATTTTGATATGTTAATCCCTACCTACTAGTATGGAAGGATTACCAACCAAGAAAACATATACAGTTTTATGGCCTGACTTGTTAGACAAGTAGACCTTTGGATTAAATTATATTCTTAAAAAATCAAATTGCTTACTTAAGACTCGTAGATAGAGTGCGTTCACCATATAGAACTATAGAGAGGTACTTTATCGGTGACTTGTCTATCTCATCATAATGATATGCATAGTGCTTTTACCAAAACCATGTCTGGTGCATTTTATTCCTTTTCTCATTCTTTGTTATATTGCTGATTTCTATCCATTGGTAACAGAAAATATTTGTTTTCTCCACATGCAGGTGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGTGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGCTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTGCAAAAGAACTGATACCACAGGTATGGAATACCTAATTCTGATTGGATATTTTATTTGCAGACTGTTGAGATTGTAGTTGTGATGTTTTTTCGAAAATGCTTGTGATGGCAGTTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATGGTAAGTTGTACTTTACGAATTGATTCTATGAAGGCTTCTGAGATGATAATGGATATGCTTGCGACCTTCTGAATTGATACTTCTTGTTCTTTGACTAAATCCACTTCAAATGTTTTCTTTTGCATAAAAAATGGGGTGGGGATAGGGGTTGGTCGATCTGTGATGGGATTTTATTCACTAAACAGTACCAACTAATTGCTAGTTAAATACAAAATCGCTAAAATGAACTGTCTCCCTTTCAACTGAAATTCATCATAGTATATAGTGCTTTGAGTTTTAAACTATGTGCTTCAATTCTTCCTTCAAAGCAGCATGAATCCTTTTTTCCCATACCACCCACAAGATGCATATTTTTATTCCAGACGTTCTTAATGTACAGTCACAAGAATTAGTTGCAGCGACATTTGTGCCAGAAAATGTGGTAAGACACATTCAATGGACCACCTACCTTTGACATTCTTAAGCCAAAATTTCACCTGCGTTTGGACAAAATAGATACTTCCTCTTGCCTGCTTGTATATGGTGGACTATATGGAAAGAGAGAAATGATGGATGTTTTGAAATAGGGACAACAACCTTCAGGAAGTGAAGCTTAAATGTATTTTGTTCTGTTTTTGGTGTACAAGTGTCTACTCCAATGAGACTGAGTCAATTGTAGATGGTTTAGGGTCCATCTAGTTCCTGGTTTAGCAATGGAAGGACTTCAATCTTTTTTCTTGTTTTTGTAAATATGGTTTTTCAGTACTACCTAAGTACTGACTGAAATACAATGTTAGGAAAAAAAAAAGAGATCAACAATCATGAAACAAGAGAAGGAATAAAATGCACCAGGCATGATTTTGGACCGGTACAGGGTTATATAAAGCACTATTGACAGCATTATGATGAGATAAACAGGTCACCAATTAAGTACCTCTTTATACTTGTATATTTATAGTACTTTACCCTCTAAATACAAATTAACTTACGATGAAAACAATAGAAAAAATATGTTTCTTGTGGGTGGCATGGAAAGATAACTATCCCTCCCTTTGAGCTTGTGAAGGCATCTTACAATGTTCTAGGCATTACCCACTAAACTTCAAACAGGCTTAGGAATATGTTTCGAGTCCACATGACTTCAGTGTCTTACAGAAAATTCTGTTCCCCACCCTCATATATGTAACATCTACCCAGTCAATCTGTGACAAGTTTACTGCATTGCAATCCAGCCCAAGCAGTGTATTCTAAAGATTGCCCCGAAGAGACATGGAGATGTTGACTACGTTATCCATAATATGTGGAACTATTGACATAGATTTGTTATTTATGACAATGAGATACCATCTATCAAAAAAGTTAAAGAGTTTTTTTTTTTTTAAAAAACAATTCGGCCATAATTGAAATCCCTGAGAATTGGAAACCTTATTTATGCAGACCAAAATTCTATTCAGGAGCCCTCTTGTATGTTGTTAACAAAGCCAAACCGATAAGAAGTTTCTTTCTCTCTTTTTCTGTTTTGCCTAATGTTTCACATGCTTCAGTTATCACATTATTTTGCTCTTGGTGCTATGTTATGCTTTCCATATTATTGCTATGACTTAGTTGCTATATCTTATTGACTGCTGTATTCGCTTTTGTAACTGCTTTGTTATGAGTTACTTGAGTCGAGGGTCTTTCAGGAACCTCTCTATCTCTCAAAGTAGAGGTAAGGTCTCCAAACACACTACCCTCCGCCGACCTCACTTGTTGGAATACACCGGGTATGTTGTTGTTGTTTTCACTTTAACCTTTTCATGTCCTTCACATAGATTATTCTTTATCAACTTCTTTTATTTCATCGGAACCTTCACCTTTTGAGTGGCATCTCATTCAAGTTAGTCCCCTGGAAGAATATTATTTTTGGGTTAAAGACTGCAATGTGGAAGCACTACATTGGAATAGTTGCTGCATTTTTTTTAAAAAAAATAGTAATGTTGTATTCCTCAGCATTAAGGGTATGCTGGTGACCTACATAAATTTTACATAGAGGGGCTCGGAAGGCTAATTCCAAAAATCCTAACATATCTACTAGTTGCTCTTCCTCTATACATTCCTGTTTACACCAAAAATACAAATATACAATGCAATTTTCTTTGACTTTCTGTATGGAGTTTGATTTGTTCTCATAGCATCTTCCATTTCTTTCCTTCCATACTGACAACCATATGTATAGTTGCTGCATTTTATTGGAATTTTGGAACTAGAGCAAATTGTTAAATGCTGAAATTTTCAATATTATTTATAATTTGCAAGTGTTGGGGTTATGCTGTTGGAATGAAGACACCTGATTAAAGAGCCCTTTGTTTATTTGTTGTGTATTTGAGTTATAACTAAACATTAATTTATTTTTCATTGGTTGTTAGAGTTTAAACCAATTACAAAGGAAATATGCAAGCTGCCCTCGTTCTTCTCCGCTG</genome_strand>
        <mrna_strand>TTTGATTTGATTTTTGAAAAAAAAAGAAAAAAGAAAAGAGGTATCGCGATTCTTTAAGGAATAGGAATTTAATGGTGATGTAGCGAGTTTGGATGCTGAGCTTTTGCAGTTACCTGAGTTGTCTCCTTTGGCTATTAAAACGAATCCTTTTGTTGCCGAGAAGCTATTTGATCAATGGCTTTCGCTTCCTGATACTGCCGCTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGTGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGCTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTGCAAAAGAACTGATACCACAG...........................................................................................TTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTAAACCAATTACAAAGGAAATATGCAAGCTGCCCTCGTTCTTCTCCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362548" ref_strand="+" ref_description="SGN-E362548 [cLPP-1-A16]">
      <seq>ttaagaatgccaaaagtggcggtccagggaatgtgtttactacatcttctgggacaaatgtcgcggcaactaattctttgccgtccatgtttcctgctggaagtacacctccactttctccaagaagttcatctggttcacctcgaatctcaaagcacagggctggaccctcttcattggggtctcctctgaaattaattaatgagcctgcaaaagaactgataccacagttttactttcaaaatggtcgcccccctccaaatgaattgaaggaacgctgcttgtttaggataaaccagttcttttatggtcacacagatgggctacaaatgaatgagtttaaaccaattacaaaggaaatatgcgagctgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="49871" stop="46423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49571" g_stop="49342" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49341" i_stop="49251" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49250" g_stop="49145" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="336" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49144" i_stop="46761" i_length="2384">
            <donor d_prob="0.823" d_score="0.96"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46760" g_stop="46723" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="374" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E362548" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49571" e_stop="49342"/>
          <exon e_start="49250" e_stop="49145"/>
          <exon e_start="46760" e_stop="46723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGTGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGCTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTGCAAAAGAACTGATACCACAGGTATGGAATACCTAATTCTGATTGGATATTTTATTTGCAGACTGTTGAGATTGTAGTTGTGATGTTTTTTCGAAAATGCTTGTGATGGCAGTTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATGGTAAGTTGTACTTTACGAATTGATTCTATGAAGGCTTCTGAGATGATAATGGATATGCTTGCGACCTTCTGAATTGATACTTCTTGTTCTTTGACTAAATCCACTTCAAATGTTTTCTTTTGCATAAAAAATGGGGTGGGGATAGGGGTTGGTCGATCTGTGATGGGATTTTATTCACTAAACAGTACCAACTAATTGCTAGTTAAATACAAAATCGCTAAAATGAACTGTCTCCCTTTCAACTGAAATTCATCATAGTATATAGTGCTTTGAGTTTTAAACTATGTGCTTCAATTCTTCCTTCAAAGCAGCATGAATCCTTTTTTCCCATACCACCCACAAGATGCATATTTTTATTCCAGACGTTCTTAATGTACAGTCACAAGAATTAGTTGCAGCGACATTTGTGCCAGAAAATGTGGTAAGACACATTCAATGGACCACCTACCTTTGACATTCTTAAGCCAAAATTTCACCTGCGTTTGGACAAAATAGATACTTCCTCTTGCCTGCTTGTATATGGTGGACTATATGGAAAGAGAGAAATGATGGATGTTTTGAAATAGGGACAACAACCTTCAGGAAGTGAAGCTTAAATGTATTTTGTTCTGTTTTTGGTGTACAAGTGTCTACTCCAATGAGACTGAGTCAATTGTAGATGGTTTAGGGTCCATCTAGTTCCTGGTTTAGCAATGGAAGGACTTCAATCTTTTTTCTTGTTTTTGTAAATATGGTTTTTCAGTACTACCTAAGTACTGACTGAAATACAATGTTAGGAAAAAAAAAAGAGATCAACAATCATGAAACAAGAGAAGGAATAAAATGCACCAGGCATGATTTTGGACCGGTACAGGGTTATATAAAGCACTATTGACAGCATTATGATGAGATAAACAGGTCACCAATTAAGTACCTCTTTATACTTGTATATTTATAGTACTTTACCCTCTAAATACAAATTAACTTACGATGAAAACAATAGAAAAAATATGTTTCTTGTGGGTGGCATGGAAAGATAACTATCCCTCCCTTTGAGCTTGTGAAGGCATCTTACAATGTTCTAGGCATTACCCACTAAACTTCAAACAGGCTTAGGAATATGTTTCGAGTCCACATGACTTCAGTGTCTTACAGAAAATTCTGTTCCCCACCCTCATATATGTAACATCTACCCAGTCAATCTGTGACAAGTTTACTGCATTGCAATCCAGCCCAAGCAGTGTATTCTAAAGATTGCCCCGAAGAGACATGGAGATGTTGACTACGTTATCCATAATATGTGGAACTATTGACATAGATTTGTTATTTATGACAATGAGATACCATCTATCAAAAAAGTTAAAGAGTTTTTTTTTTTTTAAAAAACAATTCGGCCATAATTGAAATCCCTGAGAATTGGAAACCTTATTTATGCAGACCAAAATTCTATTCAGGAGCCCTCTTGTATGTTGTTAACAAAGCCAAACCGATAAGAAGTTTCTTTCTCTCTTTTTCTGTTTTGCCTAATGTTTCACATGCTTCAGTTATCACATTATTTTGCTCTTGGTGCTATGTTATGCTTTCCATATTATTGCTATGACTTAGTTGCTATATCTTATTGACTGCTGTATTCGCTTTTGTAACTGCTTTGTTATGAGTTACTTGAGTCGAGGGTCTTTCAGGAACCTCTCTATCTCTCAAAGTAGAGGTAAGGTCTCCAAACACACTACCCTCCGCCGACCTCACTTGTTGGAATACACCGGGTATGTTGTTGTTGTTTTCACTTTAACCTTTTCATGTCCTTCACATAGATTATTCTTTATCAACTTCTTTTATTTCATCGGAACCTTCACCTTTTGAGTGGCATCTCATTCAAGTTAGTCCCCTGGAAGAATATTATTTTTGGGTTAAAGACTGCAATGTGGAAGCACTACATTGGAATAGTTGCTGCATTTTTTTTAAAAAAAATAGTAATGTTGTATTCCTCAGCATTAAGGGTATGCTGGTGACCTACATAAATTTTACATAGAGGGGCTCGGAAGGCTAATTCCAAAAATCCTAACATATCTACTAGTTGCTCTTCCTCTATACATTCCTGTTTACACCAAAAATACAAATATACAATGCAATTTTCTTTGACTTTCTGTATGGAGTTTGATTTGTTCTCATAGCATCTTCCATTTCTTTCCTTCCATACTGACAACCATATGTATAGTTGCTGCATTTTATTGGAATTTTGGAACTAGAGCAAATTGTTAAATGCTGAAATTTTCAATATTATTTATAATTTGCAAGTGTTGGGGTTATGCTGTTGGAATGAAGACACCTGATTAAAGAGCCCTTTGTTTATTTGTTGTGTATTTGAGTTATAACTAAACATTAATTTATTTTTCATTGGTTGTTAGAGTTTAAACCAATTACAAAGGAAATATGCAAGCTGCCC</genome_strand>
        <mrna_strand>TTAAGAATGCCAAAAGTGGCGGTCCAGGGAATGTGTTTACTACATCTTCTGGGACAAATGTCGCGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGTTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTGCAAAAGAACTGATACCACAG...........................................................................................TTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACGCTGCTTGTTTAGGATAAACCAGTTCTTTTATGGTCACACAGATGGGCTACAAATGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTAAACCAATTACAAAGGAAATATGCGAGCTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376527" ref_strand="+" ref_description="SGN-E376527 [TUS-17-F23]">
      <seq>tttgatttgatttttgaaaaaaaaagaaaaaagaaaagaggtatcgcgattcgcgatggatgtggattttaatggtgatgtagcgagtttggatgctgagcttttgcagttacctgagttgtctcctttggctattaaaacgaatccttttgttgccgagaagctatttgatcaatggctttcgcttcctgatactgccgctttggtgaaatctttgattaagaatgccaaaggtggcggtccattgaatgtgtctactacatcgtctgggacaaatgtcgtggcaactaattctttgccgtccatgtttcctgctggaagtacacctccactttctccaagaagctcatctggttcacctcgaatctcaaagcacagggctggaccctcttcattggggtctcctctgaaattaattaatgagcctgcaaaagaactgataccacagttttactttcaaaatggtcgcccccctccaaatgaattgaaggaacgctgtttgtttaggataaaccagttcttttatggtcatactgatgggctacaaatgaatgagtttaaaccaattacaaaggaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="53908" stop="46435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53608" g_stop="53404" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53403" i_stop="49585" i_length="3819">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49584" g_stop="49342" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="448" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49341" i_stop="49251" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49250" g_stop="49145" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="554" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49144" i_stop="46761" i_length="2384">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46760" g_stop="46735" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="580" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E376527" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53608" e_stop="53404"/>
          <exon e_start="49584" e_stop="49342"/>
          <exon e_start="49250" e_stop="49145"/>
          <exon e_start="46760" e_stop="46735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTTGATTTTTGAAAAAAAAAGAAAAAAGAAAAGAGGTATCGCGATTCGCGATGGATGTGGATTTTAATGGTGATGTAGCGAGTTTGGATGCTGAGCTTTTGCAGTTACCTGAGTTGTCTCCTTTGGCTATTAAAACGAATCCTTTTGTTGCCGAGAAGCTATTTGATCAATGGCTTTCGCTTCCTGATACTGCCGCTTTGGTAATTTCCTTATTTTCTATTTTTGCGACTTTTTTTTTTTGTTGATGTAGTAGGAGTTAGCTGTCAAAATTTGAATTTGGATTTGCTTGTACCTAGGTATACTTATTCGGAGATGTGTCAACCTGTACTGTGTGGGAGTACTTATTGTTTTATAGGTTACCACTGGTTTGGCGGTGTGCTGTATAAGGAAAAAACTGATCTTGGTGTAATACCCTGCACTACTAATAAAATGATTGGCTTCCAGTATAAACTCTGCATTAATGACACCTTCAAAACTTATGGTGGAATGTAAATGTTGTTTTATGTGAGAGAAAATACGGGAACAATAGATGTATTTGCAATACTAGGATAAGAGTACATGAAGTGTCTAAAAATACCCTTAAAACTTTATTATTGAGATTGCTATTGCAATCTGACATAACAATATATGTAATATTATCCTATTTGAGGGCACTAGGTGATAAGACTTGGGGTTAGATTACCTGGTAGTTGTGCTAGTGGAAGGTATTATGTATGCGGTAGAATAGTTGAGGGGTGCAATAACGATCAAGCTGTCTTTACAACATGGTAAACTTCACATTAGAATCCGTATGAACTACCCATTCATTAGTTAGGTGGCTGTTTGGCATATCCTTTTATTTTTGTTGAAGCTACTTTATCGTTTTACCAAGAGGGTTTCTTATGCTGTGAGTATGCATTACTCAGAGCATCACTTTTTGGGGTTTTTTCCACTTTCATAGTTCAATTATATGCAGAATTCTGGGGGTTACATCTTTTAATAACTAGTGTAAATGACCTGGCTCACCAATTGGTACCGAAAGAGAGCGTCACTTCTCTAGAACATTACCTACAAATACAATTGTCTAGCTATGCCGAGAAAACTATGGTAGCAATCCATGAATTCTATAGTATTCACGTACAATCTCAGAGAATTTCTCTAATTCTCTCAGAGATGGGAAACCTACATTTGTCATTATCTTACTCCAAAGAAGGAATTGGACAGGTTATCTTTGTATTAACTATCAAGATAATTAGTTACCATTGGTAAATTTTTTTAAATTAAAATTAACTATCAAGATAATTGGAAGTGATCAAATCATGGTATCTTCATCCAGTTAGAATTTTCATTTGGTCGGTGAAGCTGTTGGGAACAGAACGTTTCTTTGGGTAAAAAACCTTAGTACTTTATCTAAAGTCTCCAAAATGTAAAAAGGAGCAGTGTTCTGATAAGTTCAGAGATGCTTCCTTATTCTTTGACCACTTCAGCTAGTGACAGCTTCTTTTAGAGTCCTTGAAATGACCAACTGGGCTCTGAAGTGATTAAGAAACCGGGAGAGAGGAAAGTAATGCAGGAACAGATGGTTTATGGGCTTGGCGGACTTCTCATACACCACTGCAAGTGATTACTACCTTTCCTGCAGTTTATGGATGGCAGTCCAACCAAAGCATACCACTTATAGTGGAGCTTTATCCTGATAAAAAATTTACCCTGATTTAAAAAGCTTTAGTGGGGCTTTAATTTTCTTGAAGATTCTCTTGATAGTTACCTTTCCACCATTTTTGTGGTAAGGTAAATAATTTTATTAACAATTTTGAGAACCTCGTATACAAGACATACCAAAAAAGGAGAACCTTGACCATCATATGGTTCTCAATAAAAGAGGTTCAATCCTCTACAAACATGAAGACCAAAAGGAAACTAGAGACAAAGAACTACTTTGCAGTTTTATAAAAGCTTGCTCCATTCCTTCAAAAAGGCCCCCTTATTTCTCTCTTTCCAGATAACCCACATGATGGCTGGGGGGCCACTCTCCTTCCCCTTGGGCCTTTCTTCCTTCTCATATGAGTCCAACTTTGAAAAACCTCCTTCATTGTGCTTGGCATCACCCATTGCATCCGAATTAAATTAAAGCACCATGACCTTCTCATTTCCCTTGGGAGCCTATACAATTGTTTACCCTAAACCTTCTAGAAGTAAGAAACGTCATAGTGCATGGTAACTTGTGAAGAAAATTTGGAACTTTCATTTTTGATGTAGTAAATTTACGTCATTAGTCTACAACAGGCAGAGTTTATTAACCAGTAAAATGCTGAAACAATGGAAATAGAAGGCTTTAAAACTTATTGGATGGAAAAAGATGAACTCTTGACATTCCAAAGGAAAAAAGTAGTCAGTAAAGTTAGGAGTCTTAAAAGGACAAGAAGTGTGCTATATCTTCAACTGTTACAACAACAACAACTTCCACAAGAAGTGGACCTCCAAATGCATCAACTGACACAGAGAATAAAACCAAATAAATAGTTCCAGATTGTTTGGTTAATGAACTGAATAAATTCCAAATGCATAAGCAAGTAGGTTCTATGTGATGATTGAAGGTGTTAAACTGCAATGAGATAGACTCCAAATTACTTAGATAAATTGTCTCGAAAAACCACTCTTATCAAAGGCTCGCTTAACACTGATGAGGAACAGAACATGTTGAGCGCTTCCTCCTTGCATCACGGGCACTTCAGTGTCATCGTCAATATTCAAGGCTACAAGTCATACTTTTCCTTGCCAATGAGCGTAATCATGAGGAGGTGGCACTGAACAATTGATATTTTACTTTATCGTAATCTTTTTTCAATTTCTTGTCCATATATTTGATATTTTTTATTACAAATTATTTGTCTTGGACTACACATGCATATTTTTATTTTTCCTCCATTTGTGCCTTTCTTCTTAGGCCCACGCTTTATTTGCGATTTGTGCTTAAAGCATCAATGGACCTTTGAGTTTTTTTGCGCTTTTCAACTTCGAAAACTTTTGGAAAATGTGTAATTTATAACCAGGAAAAGCAGTTTTAGCTAAGTATAGAACATAATGGAAGCAAAGCTATACGAATTATGGTTAAGCTTCTTTTTTTGTTGGAACACTTATATTAGGTCCTATGTTTTTCTAAAGTCGTTTTAGCATATGAGGGAAGGTCTGTCTGCCTATGTAGGTAAAAAGGTGATTTAGCGAATTTCTAGTTTTGGAGAACCTCTAACCTAACTTAGAAGACATTATTGAGTGTTGGAATGAATTGTGCTCATGTATAACAAAGCATATATAGGGTTTCTTATTGTTGACCTTGAATAGTTTGAGATCGACATGCAGTTTTTTTGGGTATAATACATAAATGTGCACTTTAACTTGGCTTCGAATCACATTTATGCCCTTCAACTTTGGGTGTGCACAAGTAGACACTTAAACTTGTATAAAGTTGTACAGATAAACACACATGTTCTATATGTCATCCTACATGTTATTTTTTGTCCTACGTGGTGTCCTACGTGTATTGTGCCATTTAGGACTCATGTGTTTATTTATTTAAAAGTTTGATAGTTAAAGTGTCTGTTTGTGCATTATGAAAGTTGGAGGTCAAAGTTAAACTTTGAAGCCATGTTTAGGGTCCAATATATATATATATTATGCCCTTTTTTTGGGTGAACTATAGAATTTTGATATGTTAATCCCTACCTACTAGTATGGAAGGATTACCAACCAAGAAAACATATACAGTTTTATGGCCTGACTTGTTAGACAAGTAGACCTTTGGATTAAATTATATTCTTAAAAAATCAAATTGCTTACTTAAGACTCGTAGATAGAGTGCGTTCACCATATAGAACTATAGAGAGGTACTTTATCGGTGACTTGTCTATCTCATCATAATGATATGCATAGTGCTTTTACCAAAACCATGTCTGGTGCATTTTATTCCTTTTCTCATTCTTTGTTATATTGCTGATTTCTATCCATTGGTAACAGAAAATATTTGTTTTCTCCACATGCAGGTGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGTGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGCTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTGCAAAAGAACTGATACCACAGGTATGGAATACCTAATTCTGATTGGATATTTTATTTGCAGACTGTTGAGATTGTAGTTGTGATGTTTTTTCGAAAATGCTTGTGATGGCAGTTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATGGTAAGTTGTACTTTACGAATTGATTCTATGAAGGCTTCTGAGATGATAATGGATATGCTTGCGACCTTCTGAATTGATACTTCTTGTTCTTTGACTAAATCCACTTCAAATGTTTTCTTTTGCATAAAAAATGGGGTGGGGATAGGGGTTGGTCGATCTGTGATGGGATTTTATTCACTAAACAGTACCAACTAATTGCTAGTTAAATACAAAATCGCTAAAATGAACTGTCTCCCTTTCAACTGAAATTCATCATAGTATATAGTGCTTTGAGTTTTAAACTATGTGCTTCAATTCTTCCTTCAAAGCAGCATGAATCCTTTTTTCCCATACCACCCACAAGATGCATATTTTTATTCCAGACGTTCTTAATGTACAGTCACAAGAATTAGTTGCAGCGACATTTGTGCCAGAAAATGTGGTAAGACACATTCAATGGACCACCTACCTTTGACATTCTTAAGCCAAAATTTCACCTGCGTTTGGACAAAATAGATACTTCCTCTTGCCTGCTTGTATATGGTGGACTATATGGAAAGAGAGAAATGATGGATGTTTTGAAATAGGGACAACAACCTTCAGGAAGTGAAGCTTAAATGTATTTTGTTCTGTTTTTGGTGTACAAGTGTCTACTCCAATGAGACTGAGTCAATTGTAGATGGTTTAGGGTCCATCTAGTTCCTGGTTTAGCAATGGAAGGACTTCAATCTTTTTTCTTGTTTTTGTAAATATGGTTTTTCAGTACTACCTAAGTACTGACTGAAATACAATGTTAGGAAAAAAAAAAGAGATCAACAATCATGAAACAAGAGAAGGAATAAAATGCACCAGGCATGATTTTGGACCGGTACAGGGTTATATAAAGCACTATTGACAGCATTATGATGAGATAAACAGGTCACCAATTAAGTACCTCTTTATACTTGTATATTTATAGTACTTTACCCTCTAAATACAAATTAACTTACGATGAAAACAATAGAAAAAATATGTTTCTTGTGGGTGGCATGGAAAGATAACTATCCCTCCCTTTGAGCTTGTGAAGGCATCTTACAATGTTCTAGGCATTACCCACTAAACTTCAAACAGGCTTAGGAATATGTTTCGAGTCCACATGACTTCAGTGTCTTACAGAAAATTCTGTTCCCCACCCTCATATATGTAACATCTACCCAGTCAATCTGTGACAAGTTTACTGCATTGCAATCCAGCCCAAGCAGTGTATTCTAAAGATTGCCCCGAAGAGACATGGAGATGTTGACTACGTTATCCATAATATGTGGAACTATTGACATAGATTTGTTATTTATGACAATGAGATACCATCTATCAAAAAAGTTAAAGAGTTTTTTTTTTTTTAAAAAACAATTCGGCCATAATTGAAATCCCTGAGAATTGGAAACCTTATTTATGCAGACCAAAATTCTATTCAGGAGCCCTCTTGTATGTTGTTAACAAAGCCAAACCGATAAGAAGTTTCTTTCTCTCTTTTTCTGTTTTGCCTAATGTTTCACATGCTTCAGTTATCACATTATTTTGCTCTTGGTGCTATGTTATGCTTTCCATATTATTGCTATGACTTAGTTGCTATATCTTATTGACTGCTGTATTCGCTTTTGTAACTGCTTTGTTATGAGTTACTTGAGTCGAGGGTCTTTCAGGAACCTCTCTATCTCTCAAAGTAGAGGTAAGGTCTCCAAACACACTACCCTCCGCCGACCTCACTTGTTGGAATACACCGGGTATGTTGTTGTTGTTTTCACTTTAACCTTTTCATGTCCTTCACATAGATTATTCTTTATCAACTTCTTTTATTTCATCGGAACCTTCACCTTTTGAGTGGCATCTCATTCAAGTTAGTCCCCTGGAAGAATATTATTTTTGGGTTAAAGACTGCAATGTGGAAGCACTACATTGGAATAGTTGCTGCATTTTTTTTAAAAAAAATAGTAATGTTGTATTCCTCAGCATTAAGGGTATGCTGGTGACCTACATAAATTTTACATAGAGGGGCTCGGAAGGCTAATTCCAAAAATCCTAACATATCTACTAGTTGCTCTTCCTCTATACATTCCTGTTTACACCAAAAATACAAATATACAATGCAATTTTCTTTGACTTTCTGTATGGAGTTTGATTTGTTCTCATAGCATCTTCCATTTCTTTCCTTCCATACTGACAACCATATGTATAGTTGCTGCATTTTATTGGAATTTTGGAACTAGAGCAAATTGTTAAATGCTGAAATTTTCAATATTATTTATAATTTGCAAGTGTTGGGGTTATGCTGTTGGAATGAAGACACCTGATTAAAGAGCCCTTTGTTTATTTGTTGTGTATTTGAGTTATAACTAAACATTAATTTATTTTTCATTGGTTGTTAGAGTTTAAACCAATTACAAAGGAAATA</genome_strand>
        <mrna_strand>TTTGATTTGATTTTTGAAAAAAAAAGAAAAAAGAAAAGAGGTATCGCGATTCGCGATGGATGTGGATTTTAATGGTGATGTAGCGAGTTTGGATGCTGAGCTTTTGCAGTTACCTGAGTTGTCTCCTTTGGCTATTAAAACGAATCCTTTTGTTGCCGAGAAGCTATTTGATCAATGGCTTTCGCTTCCTGATACTGCCGCTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGTGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGCTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTGCAAAAGAACTGATACCACAG...........................................................................................TTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTAAACCAATTACAAAGGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331062" ref_strand="+" ref_description="SGN-E331062 [cTOD-6-E4]">
      <seq>ggaattgaggttcgtttaggtgtttgaagatcttgcggttttggtttggttcgatttgatttgatttttgaaaaaaaaagaaaaaagaaaagaggtatcgcgattcgcgatggatgtggattttaatggtgatgtagcgagtttggatgctgagcttttgcagttacctgagttgtctcctttggctattaaaacgaatccttttgttgccgagaagctatttgatcaatggctttcgcttcctgatactgccgctttggtgaaatctttgattaagaatgccaaaggtggcggtccattgaatgtgtctactacatcgtctgggacaaatgtcgtggcaactaattctttgccgtccatgtttcctgctggaagtacacctccactttctccaagaagctcatctggttcacctcgaatctcaaagcacagggctggaccctcttcattggggtctcctctgaaattaattaatgagcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="53962" stop="49062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53662" g_stop="53404" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53403" i_stop="49585" i_length="3819">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49584" g_stop="49362" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="482" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E331062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53662" e_stop="53404"/>
          <exon e_start="49584" e_stop="49362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTGAGGTTCGTTTAGGTGTTTGAAGATCTTGCGGTTTTGGTTTGGTTCGATTTGATTTGATTTTTGAAAAAAAAAGAAAAAAGAAAAGAGGTATCGCGATTCGCGATGGATGTGGATTTTAATGGTGATGTAGCGAGTTTGGATGCTGAGCTTTTGCAGTTACCTGAGTTGTCTCCTTTGGCTATTAAAACGAATCCTTTTGTTGCCGAGAAGCTATTTGATCAATGGCTTTCGCTTCCTGATACTGCCGCTTTGGTAATTTCCTTATTTTCTATTTTTGCGACTTTTTTTTTTTGTTGATGTAGTAGGAGTTAGCTGTCAAAATTTGAATTTGGATTTGCTTGTACCTAGGTATACTTATTCGGAGATGTGTCAACCTGTACTGTGTGGGAGTACTTATTGTTTTATAGGTTACCACTGGTTTGGCGGTGTGCTGTATAAGGAAAAAACTGATCTTGGTGTAATACCCTGCACTACTAATAAAATGATTGGCTTCCAGTATAAACTCTGCATTAATGACACCTTCAAAACTTATGGTGGAATGTAAATGTTGTTTTATGTGAGAGAAAATACGGGAACAATAGATGTATTTGCAATACTAGGATAAGAGTACATGAAGTGTCTAAAAATACCCTTAAAACTTTATTATTGAGATTGCTATTGCAATCTGACATAACAATATATGTAATATTATCCTATTTGAGGGCACTAGGTGATAAGACTTGGGGTTAGATTACCTGGTAGTTGTGCTAGTGGAAGGTATTATGTATGCGGTAGAATAGTTGAGGGGTGCAATAACGATCAAGCTGTCTTTACAACATGGTAAACTTCACATTAGAATCCGTATGAACTACCCATTCATTAGTTAGGTGGCTGTTTGGCATATCCTTTTATTTTTGTTGAAGCTACTTTATCGTTTTACCAAGAGGGTTTCTTATGCTGTGAGTATGCATTACTCAGAGCATCACTTTTTGGGGTTTTTTCCACTTTCATAGTTCAATTATATGCAGAATTCTGGGGGTTACATCTTTTAATAACTAGTGTAAATGACCTGGCTCACCAATTGGTACCGAAAGAGAGCGTCACTTCTCTAGAACATTACCTACAAATACAATTGTCTAGCTATGCCGAGAAAACTATGGTAGCAATCCATGAATTCTATAGTATTCACGTACAATCTCAGAGAATTTCTCTAATTCTCTCAGAGATGGGAAACCTACATTTGTCATTATCTTACTCCAAAGAAGGAATTGGACAGGTTATCTTTGTATTAACTATCAAGATAATTAGTTACCATTGGTAAATTTTTTTAAATTAAAATTAACTATCAAGATAATTGGAAGTGATCAAATCATGGTATCTTCATCCAGTTAGAATTTTCATTTGGTCGGTGAAGCTGTTGGGAACAGAACGTTTCTTTGGGTAAAAAACCTTAGTACTTTATCTAAAGTCTCCAAAATGTAAAAAGGAGCAGTGTTCTGATAAGTTCAGAGATGCTTCCTTATTCTTTGACCACTTCAGCTAGTGACAGCTTCTTTTAGAGTCCTTGAAATGACCAACTGGGCTCTGAAGTGATTAAGAAACCGGGAGAGAGGAAAGTAATGCAGGAACAGATGGTTTATGGGCTTGGCGGACTTCTCATACACCACTGCAAGTGATTACTACCTTTCCTGCAGTTTATGGATGGCAGTCCAACCAAAGCATACCACTTATAGTGGAGCTTTATCCTGATAAAAAATTTACCCTGATTTAAAAAGCTTTAGTGGGGCTTTAATTTTCTTGAAGATTCTCTTGATAGTTACCTTTCCACCATTTTTGTGGTAAGGTAAATAATTTTATTAACAATTTTGAGAACCTCGTATACAAGACATACCAAAAAAGGAGAACCTTGACCATCATATGGTTCTCAATAAAAGAGGTTCAATCCTCTACAAACATGAAGACCAAAAGGAAACTAGAGACAAAGAACTACTTTGCAGTTTTATAAAAGCTTGCTCCATTCCTTCAAAAAGGCCCCCTTATTTCTCTCTTTCCAGATAACCCACATGATGGCTGGGGGGCCACTCTCCTTCCCCTTGGGCCTTTCTTCCTTCTCATATGAGTCCAACTTTGAAAAACCTCCTTCATTGTGCTTGGCATCACCCATTGCATCCGAATTAAATTAAAGCACCATGACCTTCTCATTTCCCTTGGGAGCCTATACAATTGTTTACCCTAAACCTTCTAGAAGTAAGAAACGTCATAGTGCATGGTAACTTGTGAAGAAAATTTGGAACTTTCATTTTTGATGTAGTAAATTTACGTCATTAGTCTACAACAGGCAGAGTTTATTAACCAGTAAAATGCTGAAACAATGGAAATAGAAGGCTTTAAAACTTATTGGATGGAAAAAGATGAACTCTTGACATTCCAAAGGAAAAAAGTAGTCAGTAAAGTTAGGAGTCTTAAAAGGACAAGAAGTGTGCTATATCTTCAACTGTTACAACAACAACAACTTCCACAAGAAGTGGACCTCCAAATGCATCAACTGACACAGAGAATAAAACCAAATAAATAGTTCCAGATTGTTTGGTTAATGAACTGAATAAATTCCAAATGCATAAGCAAGTAGGTTCTATGTGATGATTGAAGGTGTTAAACTGCAATGAGATAGACTCCAAATTACTTAGATAAATTGTCTCGAAAAACCACTCTTATCAAAGGCTCGCTTAACACTGATGAGGAACAGAACATGTTGAGCGCTTCCTCCTTGCATCACGGGCACTTCAGTGTCATCGTCAATATTCAAGGCTACAAGTCATACTTTTCCTTGCCAATGAGCGTAATCATGAGGAGGTGGCACTGAACAATTGATATTTTACTTTATCGTAATCTTTTTTCAATTTCTTGTCCATATATTTGATATTTTTTATTACAAATTATTTGTCTTGGACTACACATGCATATTTTTATTTTTCCTCCATTTGTGCCTTTCTTCTTAGGCCCACGCTTTATTTGCGATTTGTGCTTAAAGCATCAATGGACCTTTGAGTTTTTTTGCGCTTTTCAACTTCGAAAACTTTTGGAAAATGTGTAATTTATAACCAGGAAAAGCAGTTTTAGCTAAGTATAGAACATAATGGAAGCAAAGCTATACGAATTATGGTTAAGCTTCTTTTTTTGTTGGAACACTTATATTAGGTCCTATGTTTTTCTAAAGTCGTTTTAGCATATGAGGGAAGGTCTGTCTGCCTATGTAGGTAAAAAGGTGATTTAGCGAATTTCTAGTTTTGGAGAACCTCTAACCTAACTTAGAAGACATTATTGAGTGTTGGAATGAATTGTGCTCATGTATAACAAAGCATATATAGGGTTTCTTATTGTTGACCTTGAATAGTTTGAGATCGACATGCAGTTTTTTTGGGTATAATACATAAATGTGCACTTTAACTTGGCTTCGAATCACATTTATGCCCTTCAACTTTGGGTGTGCACAAGTAGACACTTAAACTTGTATAAAGTTGTACAGATAAACACACATGTTCTATATGTCATCCTACATGTTATTTTTTGTCCTACGTGGTGTCCTACGTGTATTGTGCCATTTAGGACTCATGTGTTTATTTATTTAAAAGTTTGATAGTTAAAGTGTCTGTTTGTGCATTATGAAAGTTGGAGGTCAAAGTTAAACTTTGAAGCCATGTTTAGGGTCCAATATATATATATATTATGCCCTTTTTTTGGGTGAACTATAGAATTTTGATATGTTAATCCCTACCTACTAGTATGGAAGGATTACCAACCAAGAAAACATATACAGTTTTATGGCCTGACTTGTTAGACAAGTAGACCTTTGGATTAAATTATATTCTTAAAAAATCAAATTGCTTACTTAAGACTCGTAGATAGAGTGCGTTCACCATATAGAACTATAGAGAGGTACTTTATCGGTGACTTGTCTATCTCATCATAATGATATGCATAGTGCTTTTACCAAAACCATGTCTGGTGCATTTTATTCCTTTTCTCATTCTTTGTTATATTGCTGATTTCTATCCATTGGTAACAGAAAATATTTGTTTTCTCCACATGCAGGTGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGTGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGCTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTG</genome_strand>
        <mrna_strand>GGAATTGAGGTTCGTTTAGGTGTTTGAAGATCTTGCGGTTTTGGTTTGGTTCGATTTGATTTGATTTTTGAAAAAAAAAGAAAAAAGAAAAGAGGTATCGCGATTCGCGATGGATGTGGATTTTAATGGTGATGTAGCGAGTTTGGATGCTGAGCTTTTGCAGTTACCTGAGTTGTCTCCTTTGGCTATTAAAACGAATCCTTTTGTTGCCGAGAAGCTATTTGATCAATGGCTTTCGCTTCCTGATACTGCCGCTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGTGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGCTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246123" ref_strand="+" ref_description="SGN-E246123 [cLEF-40-G4]">
      <seq>caatactttgcttccagggtttcgtttttctcctctgtagattctctcctctccgatctccgtcaattttcaatttcgtgaacttccgattcgcaaagatccggttacgtttttttggttttttttggttgtttggtggcggaaccctaattttatcgggatttggaagatttcatgcgatgcgaagaggaattgaggttcgtttaggtgtttgaagatcttgcggttttggtttggttcgatttgatttgatttttgaaaaaaaaagaaaaaagaaaagaggtatcgcgattcgcgatggatgtggattttaatggtgatgtagcgagtttggatgctgagcttttgcagttacctgagttgtctcctttggctattaaaacgaatccttttgttgccgagaagctatttgatcaatggctttcgcttcctgatactgccgctttggtgaaatctttgattaagaatgccaaaggtggcggtccattgaatgtgtctactacatcgtctgggacaaatgtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="54150" stop="49208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53850" g_stop="53404" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53403" i_stop="49585" i_length="3819">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49584" g_stop="49508" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="524" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E246123" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53850" e_stop="53404"/>
          <exon e_start="49584" e_stop="49508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATACTTTGCTTCCAGGGTTTCGTTTTTCTCCTCTGTAAATTCTCTCCTCTCCGATCTCCGTCAATTTTCAATTTCGTGAACTTCCGATTCGCAAAGATCCGGTTACGTTTTTTTGGTTTTTTTTGGTTGTTTGGTGGCGGAACCCTAATTTTATCGGGATTTGGAAGATTTCATGCGATGCGAAGAGGAATTGAGGTTCGTTTAGGTGTTTGAAGATCTTGCGGTTTTGGTTTGGTTCGATTTGATTTGATTTTTGAAAAAAAAAGAAAAAAGAAAAGAGGTATCGCGATTCGCGATGGATGTGGATTTTAATGGTGATGTAGCGAGTTTGGATGCTGAGCTTTTGCAGTTACCTGAGTTGTCTCCTTTGGCTATTAAAACGAATCCTTTTGTTGCCGAGAAGCTATTTGATCAATGGCTTTCGCTTCCTGATACTGCCGCTTTGGTAATTTCCTTATTTTCTATTTTTGCGACTTTTTTTTTTTGTTGATGTAGTAGGAGTTAGCTGTCAAAATTTGAATTTGGATTTGCTTGTACCTAGGTATACTTATTCGGAGATGTGTCAACCTGTACTGTGTGGGAGTACTTATTGTTTTATAGGTTACCACTGGTTTGGCGGTGTGCTGTATAAGGAAAAAACTGATCTTGGTGTAATACCCTGCACTACTAATAAAATGATTGGCTTCCAGTATAAACTCTGCATTAATGACACCTTCAAAACTTATGGTGGAATGTAAATGTTGTTTTATGTGAGAGAAAATACGGGAACAATAGATGTATTTGCAATACTAGGATAAGAGTACATGAAGTGTCTAAAAATACCCTTAAAACTTTATTATTGAGATTGCTATTGCAATCTGACATAACAATATATGTAATATTATCCTATTTGAGGGCACTAGGTGATAAGACTTGGGGTTAGATTACCTGGTAGTTGTGCTAGTGGAAGGTATTATGTATGCGGTAGAATAGTTGAGGGGTGCAATAACGATCAAGCTGTCTTTACAACATGGTAAACTTCACATTAGAATCCGTATGAACTACCCATTCATTAGTTAGGTGGCTGTTTGGCATATCCTTTTATTTTTGTTGAAGCTACTTTATCGTTTTACCAAGAGGGTTTCTTATGCTGTGAGTATGCATTACTCAGAGCATCACTTTTTGGGGTTTTTTCCACTTTCATAGTTCAATTATATGCAGAATTCTGGGGGTTACATCTTTTAATAACTAGTGTAAATGACCTGGCTCACCAATTGGTACCGAAAGAGAGCGTCACTTCTCTAGAACATTACCTACAAATACAATTGTCTAGCTATGCCGAGAAAACTATGGTAGCAATCCATGAATTCTATAGTATTCACGTACAATCTCAGAGAATTTCTCTAATTCTCTCAGAGATGGGAAACCTACATTTGTCATTATCTTACTCCAAAGAAGGAATTGGACAGGTTATCTTTGTATTAACTATCAAGATAATTAGTTACCATTGGTAAATTTTTTTAAATTAAAATTAACTATCAAGATAATTGGAAGTGATCAAATCATGGTATCTTCATCCAGTTAGAATTTTCATTTGGTCGGTGAAGCTGTTGGGAACAGAACGTTTCTTTGGGTAAAAAACCTTAGTACTTTATCTAAAGTCTCCAAAATGTAAAAAGGAGCAGTGTTCTGATAAGTTCAGAGATGCTTCCTTATTCTTTGACCACTTCAGCTAGTGACAGCTTCTTTTAGAGTCCTTGAAATGACCAACTGGGCTCTGAAGTGATTAAGAAACCGGGAGAGAGGAAAGTAATGCAGGAACAGATGGTTTATGGGCTTGGCGGACTTCTCATACACCACTGCAAGTGATTACTACCTTTCCTGCAGTTTATGGATGGCAGTCCAACCAAAGCATACCACTTATAGTGGAGCTTTATCCTGATAAAAAATTTACCCTGATTTAAAAAGCTTTAGTGGGGCTTTAATTTTCTTGAAGATTCTCTTGATAGTTACCTTTCCACCATTTTTGTGGTAAGGTAAATAATTTTATTAACAATTTTGAGAACCTCGTATACAAGACATACCAAAAAAGGAGAACCTTGACCATCATATGGTTCTCAATAAAAGAGGTTCAATCCTCTACAAACATGAAGACCAAAAGGAAACTAGAGACAAAGAACTACTTTGCAGTTTTATAAAAGCTTGCTCCATTCCTTCAAAAAGGCCCCCTTATTTCTCTCTTTCCAGATAACCCACATGATGGCTGGGGGGCCACTCTCCTTCCCCTTGGGCCTTTCTTCCTTCTCATATGAGTCCAACTTTGAAAAACCTCCTTCATTGTGCTTGGCATCACCCATTGCATCCGAATTAAATTAAAGCACCATGACCTTCTCATTTCCCTTGGGAGCCTATACAATTGTTTACCCTAAACCTTCTAGAAGTAAGAAACGTCATAGTGCATGGTAACTTGTGAAGAAAATTTGGAACTTTCATTTTTGATGTAGTAAATTTACGTCATTAGTCTACAACAGGCAGAGTTTATTAACCAGTAAAATGCTGAAACAATGGAAATAGAAGGCTTTAAAACTTATTGGATGGAAAAAGATGAACTCTTGACATTCCAAAGGAAAAAAGTAGTCAGTAAAGTTAGGAGTCTTAAAAGGACAAGAAGTGTGCTATATCTTCAACTGTTACAACAACAACAACTTCCACAAGAAGTGGACCTCCAAATGCATCAACTGACACAGAGAATAAAACCAAATAAATAGTTCCAGATTGTTTGGTTAATGAACTGAATAAATTCCAAATGCATAAGCAAGTAGGTTCTATGTGATGATTGAAGGTGTTAAACTGCAATGAGATAGACTCCAAATTACTTAGATAAATTGTCTCGAAAAACCACTCTTATCAAAGGCTCGCTTAACACTGATGAGGAACAGAACATGTTGAGCGCTTCCTCCTTGCATCACGGGCACTTCAGTGTCATCGTCAATATTCAAGGCTACAAGTCATACTTTTCCTTGCCAATGAGCGTAATCATGAGGAGGTGGCACTGAACAATTGATATTTTACTTTATCGTAATCTTTTTTCAATTTCTTGTCCATATATTTGATATTTTTTATTACAAATTATTTGTCTTGGACTACACATGCATATTTTTATTTTTCCTCCATTTGTGCCTTTCTTCTTAGGCCCACGCTTTATTTGCGATTTGTGCTTAAAGCATCAATGGACCTTTGAGTTTTTTTGCGCTTTTCAACTTCGAAAACTTTTGGAAAATGTGTAATTTATAACCAGGAAAAGCAGTTTTAGCTAAGTATAGAACATAATGGAAGCAAAGCTATACGAATTATGGTTAAGCTTCTTTTTTTGTTGGAACACTTATATTAGGTCCTATGTTTTTCTAAAGTCGTTTTAGCATATGAGGGAAGGTCTGTCTGCCTATGTAGGTAAAAAGGTGATTTAGCGAATTTCTAGTTTTGGAGAACCTCTAACCTAACTTAGAAGACATTATTGAGTGTTGGAATGAATTGTGCTCATGTATAACAAAGCATATATAGGGTTTCTTATTGTTGACCTTGAATAGTTTGAGATCGACATGCAGTTTTTTTGGGTATAATACATAAATGTGCACTTTAACTTGGCTTCGAATCACATTTATGCCCTTCAACTTTGGGTGTGCACAAGTAGACACTTAAACTTGTATAAAGTTGTACAGATAAACACACATGTTCTATATGTCATCCTACATGTTATTTTTTGTCCTACGTGGTGTCCTACGTGTATTGTGCCATTTAGGACTCATGTGTTTATTTATTTAAAAGTTTGATAGTTAAAGTGTCTGTTTGTGCATTATGAAAGTTGGAGGTCAAAGTTAAACTTTGAAGCCATGTTTAGGGTCCAATATATATATATATTATGCCCTTTTTTTGGGTGAACTATAGAATTTTGATATGTTAATCCCTACCTACTAGTATGGAAGGATTACCAACCAAGAAAACATATACAGTTTTATGGCCTGACTTGTTAGACAAGTAGACCTTTGGATTAAATTATATTCTTAAAAAATCAAATTGCTTACTTAAGACTCGTAGATAGAGTGCGTTCACCATATAGAACTATAGAGAGGTACTTTATCGGTGACTTGTCTATCTCATCATAATGATATGCATAGTGCTTTTACCAAAACCATGTCTGGTGCATTTTATTCCTTTTCTCATTCTTTGTTATATTGCTGATTTCTATCCATTGGTAACAGAAAATATTTGTTTTCTCCACATGCAGGTGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGT</genome_strand>
        <mrna_strand>CAATACTTTGCTTCCAGGGTTTCGTTTTTCTCCTCTGTAGATTCTCTCCTCTCCGATCTCCGTCAATTTTCAATTTCGTGAACTTCCGATTCGCAAAGATCCGGTTACGTTTTTTTGGTTTTTTTTGGTTGTTTGGTGGCGGAACCCTAATTTTATCGGGATTTGGAAGATTTCATGCGATGCGAAGAGGAATTGAGGTTCGTTTAGGTGTTTGAAGATCTTGCGGTTTTGGTTTGGTTCGATTTGATTTGATTTTTGAAAAAAAAAGAAAAAAGAAAAGAGGTATCGCGATTCGCGATGGATGTGGATTTTAATGGTGATGTAGCGAGTTTGGATGCTGAGCTTTTGCAGTTACCTGAGTTGTCTCCTTTGGCTATTAAAACGAATCCTTTTGTTGCCGAGAAGCTATTTGATCAATGGCTTTCGCTTCCTGATACTGCCGCTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340022" ref_strand="+" ref_description="SGN-E340022 [cTOF-3-G20]">
      <seq>aagaaccaaaggtactttttttttctttcttaattcaatttaaatatgatttgtctcgaatgtttatgtagccgactctaacttttttgagatcgaggcttagttgtattaagggggtttggaaagtcttgtattaactaactctaaacttgtttgggatcgaggcgtgattttttgttattgtgatttcgtgtttgagagactctcactgatacgactagactaaatgacgaggattattcttcctcatcaatgtccctttttctccaataatttgaagccaaaaagtgaatcttcaaagcataattttgttgtaagatgtagtattagcaatgaggagagtagagtaaatattagaaatcctcaaagggtgaaaatttctagtgaaaatagaggttcacatgatatgaaagtgttaaattggtcatgtaaagtaggcaaatatgatgaaacattgtatttacttgaatgtaaggtgaagagtggttataaacctgatgtgattctgtgtacaaagctgattaaggggtttttcaactcgaaaaattcggataaaggggtgaaagtaatgcaaattctggagcagtttggtgaaccagatgtgtttgcatataatgcacttgtaagtggattntgcaaaatgaacaagattgaagaagctaataagggtgttgaataggatgaaaactcatggatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="57969" stop="59267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58269" g_stop="58967" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E340022" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58269" e_stop="58967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACCAAAGGTACTTTTTTTTTCTTTCTTAATTCAATTTAAATATGATTTGTCTCGAATGTTTATGTAGCCGACTCTAACTTTTTTGAGATCGAGGCTTAGTTGTATTAAGGGGGTTTGGAAAGTCTTGTATTAACTAACTCTAAACTTGTTTGGGATCGAGGCGTGATTTTTTGTTATTGTGATTTCGTGTTTGAGAGACTCTCACTGATACGACTAGACTAAATGACGAGGATTATTCTTCCTCATCAATGTCCCTTTTTCTCCAATAATTTGAAGCCAAAAAGTGAATCTTCAAAGCATAATTTTGTTGTAAGATGTAGTATTAGCAATGAGGAGAGTAGAGTAAATATTAGAAATCCTCAAAGGGTGAAAATTTCTAGTGAAAATAGAGGTTCACATGATATGAAAGTGTTAAATTGGTCATGTAAAGTAGGCAAATATGATGAAACATTGTATTTACTTGAATGTAAGGTGAAGAGTGGTTATAAACCTGATGTGATTCTGTGTACAAAGCTGATTAAGGGGTTTTTCAACTCGAAAAATTCGGATAAAGGGGTGAAAGTAATGCAAATTCTGGAGCAGTTTGGTGAACCAGATGTGTTTGCATATAATGCACTTGTAAGTGGATTTTGCAAAATGAACAAGATTGAAGAAGCTAATAA-GGTGTTGAATAGGATGAAAACTCATGGATTTCC</genome_strand>
        <mrna_strand>AAGAACCAAAGGTACTTTTTTTTTCTTTCTTAATTCAATTTAAATATGATTTGTCTCGAATGTTTATGTAGCCGACTCTAACTTTTTTGAGATCGAGGCTTAGTTGTATTAAGGGGGTTTGGAAAGTCTTGTATTAACTAACTCTAAACTTGTTTGGGATCGAGGCGTGATTTTTTGTTATTGTGATTTCGTGTTTGAGAGACTCTCACTGATACGACTAGACTAAATGACGAGGATTATTCTTCCTCATCAATGTCCCTTTTTCTCCAATAATTTGAAGCCAAAAAGTGAATCTTCAAAGCATAATTTTGTTGTAAGATGTAGTATTAGCAATGAGGAGAGTAGAGTAAATATTAGAAATCCTCAAAGGGTGAAAATTTCTAGTGAAAATAGAGGTTCACATGATATGAAAGTGTTAAATTGGTCATGTAAAGTAGGCAAATATGATGAAACATTGTATTTACTTGAATGTAAGGTGAAGAGTGGTTATAAACCTGATGTGATTCTGTGTACAAAGCTGATTAAGGGGTTTTTCAACTCGAAAAATTCGGATAAAGGGGTGAAAGTAATGCAAATTCTGGAGCAGTTTGGTGAACCAGATGTGTTTGCATATAATGCACTTGTAAGTGGATTNTGCAAAATGAACAAGATTGAAGAAGCTAATAAGGGTGTTGAATAGGATGAAAACTCATGGATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730744" ref_strand="+" ref_description="SGN-E730744 [LA25AC06]">
      <seq>cccctaatccctaatttagcgatcggaaaatctcaattcaccggcgttacgatgtcatcgatgccttcaacgtcggcggcagctacttcatcgtcgtcgcaattcacctactcgaacggcacctactttccgacgccttttcatctccaacaacaacctcctcagccctacataggtgctgctcctccgcccgttcaacttcctgttccttccgtctatcctgctcctgctgctattcctggcgtttacactttgcctcagtttcaacaagctcaacagttgttccaaagagacgcacaaacaatcacacctgaagcacttgaaaatgtgaaagctgcacttgcgagcagtgaaattgagcacaaagctgaggccaagaagaaagctgtaccgcgtaaggcagcaggacatagttgggaagatcctactctggcagagtggcccgaaaatgattatcgtctattctgtggtgatctcgggaatgaggtgaatgatgatgtcctatcaaaagctttttcaaggtttccaacttttaatatggccaaggttgtaagagacaagcggactggtaagaccaggggatatggatttgtgagtttttccaatccattggatcttgctgcggcacttaaagaaatgaatggaaagtatgttggtaaccggcctattaaacttcgcaagagtaagtggcaagagagaattgactatgaggctgtggaaagtcacaagaaccgatcacataagaaaccaaagcaagcaaagaagggtatatttcacaagtgagcatagcatacatcaaccatgataagggactcagcagcaagatacttgaaatgtgtattaatcaatttctttacagtccttgcctgggaaagaaagaatcaagtatagtcccaggatgcatctatgtctgcaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="85407" stop="80218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85108" g_stop="84839" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84838" i_stop="84265" i_length="574">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84264" g_stop="84087" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="448" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84086" i_stop="83388" i_length="699">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.409" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83387" g_stop="83290" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="546" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83289" i_stop="81477" i_length="1813">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81476" g_stop="81380" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="643" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81379" i_stop="80906" i_length="474">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80905" g_stop="80820" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="729" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80819" i_stop="80710" i_length="110">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80709" g_stop="80518" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="920" r_length="191" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E730744" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>921</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85108" e_stop="84839"/>
          <exon e_start="84264" e_stop="84087"/>
          <exon e_start="83387" e_stop="83290"/>
          <exon e_start="81476" e_stop="81380"/>
          <exon e_start="80905" e_stop="80820"/>
          <exon e_start="80709" e_stop="80518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAAATCCCTAATTTAGCGATCGGAAAATCTCAATTCACCGGCGTTACGATGTCATCGATGCCTTCAACGTCGGCGGCAGCTACTTCATCGTCGTCGCAATTCACCTACTCGAACGGCACCTACTTTCCGACGCCTTTTCATCTCCAACAACAACCTCCTCAGCCCTACATAGGTGCTGCTCCTCCGCCCGTTCAACTTCCTGTTCCTTCCGTCTATCCTGCTCCTGCTGCTATTCCTGGCGTTTACACTTTGCCTCAGTTTCAACAAGTAAGTATTTCAAACATCAGCAAATATTTATGACCTAAAAATAAACGGAAGTTATAAACACTTATATCTGAATTTCGCTCTCTGTATATCCGTGAAAATTTGAAATTGGTTGTCAATCCTTGAGTTTTGATTGCGTTAGAGTCGGGCTAATATCCATAGAAAGGTTACTTTTATGTTAAGTTTGCATTTTTTCCATCTAAACAAGTTGCTTAATATGTAATTATAAGTGGTTTTTTCCTTGTTAGATTTTCTGATTGATTTGGATTTTAGAAATTAGAATTTGGCAGTAGTTTTGTAATATTTCCTGTGAAACTGTTGAGATAATTTCTTTTTAAAAATTAAATAAGGGTGTTGTCCAGACCAGCTTGCTTGTTGAGATCATTTTTGCTTCTGTATGTGTGAATATGTGCTTGATAAGATATCAAGACAGCCAATTATAAGCTTGTTAATTTCCTCTAGGAGGGGAACGGATGATAATTTCTGTAGAAACATTTGCAGATGGCCTTTGTACATAATTAGCTTTGCCATGGAAAACCTTTTGTCATGTTTGTAATATATGTATTCTTGTGGACAGGCTCAACAGTTGTTCCAAAGAGACGCACAAACAATCACACCTGAAGCACTTGAAAATGTGAAAGCTGCACTTGCGAGCAGTGAAATTGAGCACAAAGCTGAGGCCAAGAAGAAAGCTGTACCGCGTAAGGCAGCAGGACATAGTTGGGAAGATCCTACTCTGGCAGAGTGGCCCGAAAGTAAGCCTAATATCCTATTTCTTTTTCTTTCCTTGTCAGTCTATGCCTCACGCTTTTCAAGTCTATTTATTATTCTGTTTTTTGGTATTACTCTAGTTCTCTCTCCTTATAGTCTTTGAAGTTTTTGGCATCAATTGAAATGGATACACGTGTACTACCTTGTGCTGAAGGGTTTGGCATTATAAATTTGGTTCAAAGCGATCCGCCAGTCATACAATTTAAAATTTTAGGAAGAATTCAAGGACTTCAGATCTATTAGCCTAGGGTAAAGTGCTTAATATTATTGCAGAACTCTCTTGTCTGGATGATGTATGCTTGAAAACACACTTTATGAATTTTTGTTAGTTAAGTTGTGGAGAGTTTTTGTCTTCTCTTTTTAATTGCTTATCTTTTTCTGCCTTTCTGGAGGTCTTTAGTAAAAATAGAACTCTGCAAACTAATCTATCAGATGTTACTTGTTTTAGTATTATGATCCTTTTTTTTTTATAAGATATTTCAGTATTATGCTTTGTTGGTCCACTTTCATGGATTATGGCCTGCTGCTTATCGTTTTTATCATGCAGTTATCTATATATCTTCACTAATGATTCTCTTTGGCACTATGATGGCTGTTTGCACTTATTTGTTCCTTTGTTGTTAGAATCGGTGCAAATCCTAGATCAGCGGAATAACTAAGTTACCGTTCTGATGGTGTCACAGATGATTATCGTCTATTCTGTGGTGATCTCGGGAATGAGGTGAATGATGATGTCCTATCAAAAGCTTTTTCAAGGTTTCCAACTTTTAATATGGCCAAGGTATGTGCAGTTTATATTTTCCAATAATTTTACATGTTTATGTTTTTGATTGTTATACATGAGTACTGTCATGAAGGGAGAGAAAATTCTTTCTATATGCTTAGACAGCTACTGATAGTGTGGTACATTGAAAGTGGTGTGCATGCATTTAGTTTTGAGAGACTTCTCCTCAATTTTAACTGCGTTCTATTTCGACTTCAATAACTTTTTAGTAGTATCATTGTTGGATAAAAAATTGCATTCCTCAGCTTGTCACCGGTCCAGTAATCTCCTTCTCTTCTCCGGCATATAATCTCACTGGCGTCTCATTCTAGATTTGGGTAATATGCCCTATTCCTTTGAATTCAATTCTCACTCCCTTCGGAATGCTATTTCTCCCACCCTTCAATGAAATTCTTGCCCATTTTAGGTTATTTCGGGGTTCTGTCTCTTTCTTCCGTCCTTCTCCATCTTCCACAAAATTCCCCTACTGCCTTAAAAACCTTGTTTGACCACACGTGAAGAGGTAAACATACCAGTCTGATCCAGGTCTGTTCAATAGCTGCTGTAGATCGGATAGCACCTACAGTTGGTGTCCACCGTTGGAGTTGCAAGCTCTTTCTTCCACGACCAACTACATCTGAGTACATGTTCTGCAGCTTTTCATGTAGGCGAACTCAAAAAGGAATCAGTTTTTCCCCATGTCATAGATGTTCAGACCATGGGATTGGTTCCAGTTCGAATTAGCCATCTATTTCCGAGAGGGTCGGCCGGTCGGGATTTCAGACCCATTAGTACCTCACCATAAAGGCTCCTGCTCAAAGCCTCACAATGAGATAGTTTGGTTTAACCATCAATATGGATTATATCTCCATCTTGTTTGGTGGTTGCAGCATTTAACTGTTCAGCATAGGGAATTCCCTTGTCAATCAAAGTGGGGGTTTTGTTGGTTATCCTCGTGGCTCTATTCTCTATTTGTTATAGCCAAATCTCACCAACCTACATTTGATGCTGTTTCTGGAATAACTAATACTGCTGTCTTTTCCCTATACGCTGATTATACTTACATATCTCCCTCTATTGTTGAAATTTCTTGCACGGAAAAGCTGGGTAGATCATTCCTGACTTCCTGTCGTTTCCATCTGCAAACAGTACTGCCTTCAATTTTTAAAGCTTCTTTTAAAGTTCTGCACAGCCATTCGATTGTGTTCTGACTAAAACTTTGACCTGCTCATCTTTTTTCTTCCACATTCAATCCAGTCTTACCAGCTTTCTTTGTCAAAGGATTTGAATCCCAACACAAAATAGATTATGTTGTTTTCCATGATATGAGTCAAGGAGAGAGAAAGAAGGGGTTGATTGTTAACCTTCAACCTTTTTTTCTCAGTTACCCAAAAAAAAAGGGGGGGGGAGGGGAGGGGTTGATGATTAACATGTAAGGTGTTAAGTGAGGTATGGAAAGCAAAATTTTCCAGTGCCAAGTCCACCGAAAAGGGTGGTTCTTCCCTCCTAGGAAGTAGGAGATAGAAGTATCTCGGTATTCGTGTCTGGGAGCATTTTTTTACACTTTTTTTCTTCTCTTTTCTAACACATCAATTTTTTTCAAGAACAGCCTTTTGAAGATAAAGATAATGTGATCTAGATTTGCATCTTCCTATTTAGCTGTGGATTAAGTGTTCCTATCCATCATGGTTTCTATTCCTATGAATGTTACGTTCTATGAGAAGTATTTTATTTTATATTCTTGCTTGTTTTCGTGAAACTTCATTGTATAACTGTATGCTGTAGCTTACAAGGTTCAGTAATAAAGGGTGTCTACAATTCATGTTGACAGGTTGTAAGAGACAAGCGGACTGGTAAGACCAGGGGATATGGATTTGTGAGTTTTTCCAATCCATTGGATCTTGCTGCGGCACTTAAAGAAATGAATGGTAAGTTATCTGTTAATCATTATATGTGTAGTATCTTAGTCTCTTTTTATATAGTTTCTTGGTTCCCCTTTTCTTTGATATTTTTATGTCAACTGATTTAGATTCATAGAAAAAGTGTGCCCCCTATTGAGCCAGTGGTTTTGTATTTGAACGTGTAATCTCTCTCCCTCGCCCCCTCCCCTCCCCTCTCTGCACAGAAGAAGGAATAATGGAGGAATTAAGTAACAGAACTCTGTACTGAGGACACCATTTAGGACTGCTTTTGAAATCAGTTTAGGTAAAGAAAAAATTAGTGAGGAAATAACAACATCAACCAAACTTGTACGAGAGAATCTCAGAAGTCTGTTTTTTGTGGAGTTAGTGAAGTGGGAAGTTCATCAATGTCTTTAATGACGGTTGTTTTAGTTATTGAATCAGTATAATATTATACCTAGATGCCTACTAATGATGTGGGGAAATTCATGCTATTTTCAGGAAAGTATGTTGGTAACCGGCCTATTAAACTTCGCAAGAGTAAGTGGCAAGAGAGAATTGACTATGAGGCTGTGGAAAGTCACAAGGTGAGGTTTCTTCCGCGGTGATTGTCCTACTTATATTATATTACATCGGGACAGAGGCATTAACTGACTACTTTTTTTTTCTCTTTTGAATGTGTTGGATCTTGTGACAGAACCGATCACATAAGAAACCAAAGCAAGCAAAGAAGGGTATATTTCACAAGTGAGCATAGCATACATCAACCATGATAA-GGACTCAAGCAGCAAGATACTTGAAATGTGTATTAATCAATTTCTTTACCAGTCCTTGCCTGGGAAAGAAGGATCAAAGTATAGTCCAAGGATGCATCTATGTCTGCAATTTG</genome_strand>
        <mrna_strand>CCCCTAATCCCTAATTTAGCGATCGGAAAATCTCAATTCACCGGCGTTACGATGTCATCGATGCCTTCAACGTCGGCGGCAGCTACTTCATCGTCGTCGCAATTCACCTACTCGAACGGCACCTACTTTCCGACGCCTTTTCATCTCCAACAACAACCTCCTCAGCCCTACATAGGTGCTGCTCCTCCGCCCGTTCAACTTCCTGTTCCTTCCGTCTATCCTGCTCCTGCTGCTATTCCTGGCGTTTACACTTTGCCTCAGTTTCAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAACAGTTGTTCCAAAGAGACGCACAAACAATCACACCTGAAGCACTTGAAAATGTGAAAGCTGCACTTGCGAGCAGTGAAATTGAGCACAAAGCTGAGGCCAAGAAGAAAGCTGTACCGCGTAAGGCAGCAGGACATAGTTGGGAAGATCCTACTCTGGCAGAGTGGCCCGAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTATCGTCTATTCTGTGGTGATCTCGGGAATGAGGTGAATGATGATGTCCTATCAAAAGCTTTTTCAAGGTTTCCAACTTTTAATATGGCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAAGAGACAAGCGGACTGGTAAGACCAGGGGATATGGATTTGTGAGTTTTTCCAATCCATTGGATCTTGCTGCGGCACTTAAAGAAATGAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTATGTTGGTAACCGGCCTATTAAACTTCGCAAGAGTAAGTGGCAAGAGAGAATTGACTATGAGGCTGTGGAAAGTCACAAG..............................................................................................................AACCGATCACATAAGAAACCAAAGCAAGCAAAGAAGGGTATATTTCACAAGTGAGCATAGCATACATCAACCATGATAAGGGACTC-AGCAGCAAGATACTTGAAATGTGTATTAATCAATTTCTTTA-CAGTCCTTGCCTGGGAAAGAAAGAATCAAGTATAGTCCCAGGATGCATCTATGTCTGCAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724181" ref_strand="+" ref_description="SGN-E724181 [FC23BC10]">
      <seq>aaaatctcaattcaccggcgttacaatgtcatcgatgccttcaacgtcggcggcagctacttcatcgtcgtcgcaattcacctactcgaacggcacctactttccgacgccttttcatctccaacaacaacctcctcagccctacataggtgctgctcctccgcccgttcaacttcctgttccttccgtctatcctgctcctgctgctattcctggcgtttacactttgcctcagtttcaacaagctcaacagttgttccaaagagacgcacaaacaatcacacctgaagcacttgaaaatgtgaaagctgcacttgcgagcagtgaaattgagcacaaagctgaggccaagaaaaaagctgtaccgcgtaaggcagcaggacatagttgggaagatcctactctggcaaagtggcccgaaaatgattatcgtctattctgtggtgatctcgggaatgaggtgaatgatgatgtcctatcaaaagctttttcaaggtttccaacttttaatatggccaaggttgtaagagacaagcggactggtaagaccaggggatatggatttgtgagtttttccaatccattggatcttgctgcggcacttaaagaaatgaatggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="85382" stop="81076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85082" g_stop="84839" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84838" i_stop="84265" i_length="574">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84264" g_stop="84087" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="422" r_length="178" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84086" i_stop="83388" i_length="699">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.409" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83387" g_stop="83290" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="520" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83289" i_stop="81477" i_length="1813">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81476" g_stop="81380" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="617" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E724181" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85082" e_stop="84839"/>
          <exon e_start="84264" e_stop="84087"/>
          <exon e_start="83387" e_stop="83290"/>
          <exon e_start="81476" e_stop="81380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTCAATTCACCGGCGTTACGATGTCATCGATGCCTTCAACGTCGGCGGCAGCTACTTCATCGTCGTCGCAATTCACCTACTCGAACGGCACCTACTTTCCGACGCCTTTTCATCTCCAACAACAACCTCCTCAGCCCTACATAGGTGCTGCTCCTCCGCCCGTTCAACTTCCTGTTCCTTCCGTCTATCCTGCTCCTGCTGCTATTCCTGGCGTTTACACTTTGCCTCAGTTTCAACAAGTAAGTATTTCAAACATCAGCAAATATTTATGACCTAAAAATAAACGGAAGTTATAAACACTTATATCTGAATTTCGCTCTCTGTATATCCGTGAAAATTTGAAATTGGTTGTCAATCCTTGAGTTTTGATTGCGTTAGAGTCGGGCTAATATCCATAGAAAGGTTACTTTTATGTTAAGTTTGCATTTTTTCCATCTAAACAAGTTGCTTAATATGTAATTATAAGTGGTTTTTTCCTTGTTAGATTTTCTGATTGATTTGGATTTTAGAAATTAGAATTTGGCAGTAGTTTTGTAATATTTCCTGTGAAACTGTTGAGATAATTTCTTTTTAAAAATTAAATAAGGGTGTTGTCCAGACCAGCTTGCTTGTTGAGATCATTTTTGCTTCTGTATGTGTGAATATGTGCTTGATAAGATATCAAGACAGCCAATTATAAGCTTGTTAATTTCCTCTAGGAGGGGAACGGATGATAATTTCTGTAGAAACATTTGCAGATGGCCTTTGTACATAATTAGCTTTGCCATGGAAAACCTTTTGTCATGTTTGTAATATATGTATTCTTGTGGACAGGCTCAACAGTTGTTCCAAAGAGACGCACAAACAATCACACCTGAAGCACTTGAAAATGTGAAAGCTGCACTTGCGAGCAGTGAAATTGAGCACAAAGCTGAGGCCAAGAAGAAAGCTGTACCGCGTAAGGCAGCAGGACATAGTTGGGAAGATCCTACTCTGGCAGAGTGGCCCGAAAGTAAGCCTAATATCCTATTTCTTTTTCTTTCCTTGTCAGTCTATGCCTCACGCTTTTCAAGTCTATTTATTATTCTGTTTTTTGGTATTACTCTAGTTCTCTCTCCTTATAGTCTTTGAAGTTTTTGGCATCAATTGAAATGGATACACGTGTACTACCTTGTGCTGAAGGGTTTGGCATTATAAATTTGGTTCAAAGCGATCCGCCAGTCATACAATTTAAAATTTTAGGAAGAATTCAAGGACTTCAGATCTATTAGCCTAGGGTAAAGTGCTTAATATTATTGCAGAACTCTCTTGTCTGGATGATGTATGCTTGAAAACACACTTTATGAATTTTTGTTAGTTAAGTTGTGGAGAGTTTTTGTCTTCTCTTTTTAATTGCTTATCTTTTTCTGCCTTTCTGGAGGTCTTTAGTAAAAATAGAACTCTGCAAACTAATCTATCAGATGTTACTTGTTTTAGTATTATGATCCTTTTTTTTTTATAAGATATTTCAGTATTATGCTTTGTTGGTCCACTTTCATGGATTATGGCCTGCTGCTTATCGTTTTTATCATGCAGTTATCTATATATCTTCACTAATGATTCTCTTTGGCACTATGATGGCTGTTTGCACTTATTTGTTCCTTTGTTGTTAGAATCGGTGCAAATCCTAGATCAGCGGAATAACTAAGTTACCGTTCTGATGGTGTCACAGATGATTATCGTCTATTCTGTGGTGATCTCGGGAATGAGGTGAATGATGATGTCCTATCAAAAGCTTTTTCAAGGTTTCCAACTTTTAATATGGCCAAGGTATGTGCAGTTTATATTTTCCAATAATTTTACATGTTTATGTTTTTGATTGTTATACATGAGTACTGTCATGAAGGGAGAGAAAATTCTTTCTATATGCTTAGACAGCTACTGATAGTGTGGTACATTGAAAGTGGTGTGCATGCATTTAGTTTTGAGAGACTTCTCCTCAATTTTAACTGCGTTCTATTTCGACTTCAATAACTTTTTAGTAGTATCATTGTTGGATAAAAAATTGCATTCCTCAGCTTGTCACCGGTCCAGTAATCTCCTTCTCTTCTCCGGCATATAATCTCACTGGCGTCTCATTCTAGATTTGGGTAATATGCCCTATTCCTTTGAATTCAATTCTCACTCCCTTCGGAATGCTATTTCTCCCACCCTTCAATGAAATTCTTGCCCATTTTAGGTTATTTCGGGGTTCTGTCTCTTTCTTCCGTCCTTCTCCATCTTCCACAAAATTCCCCTACTGCCTTAAAAACCTTGTTTGACCACACGTGAAGAGGTAAACATACCAGTCTGATCCAGGTCTGTTCAATAGCTGCTGTAGATCGGATAGCACCTACAGTTGGTGTCCACCGTTGGAGTTGCAAGCTCTTTCTTCCACGACCAACTACATCTGAGTACATGTTCTGCAGCTTTTCATGTAGGCGAACTCAAAAAGGAATCAGTTTTTCCCCATGTCATAGATGTTCAGACCATGGGATTGGTTCCAGTTCGAATTAGCCATCTATTTCCGAGAGGGTCGGCCGGTCGGGATTTCAGACCCATTAGTACCTCACCATAAAGGCTCCTGCTCAAAGCCTCACAATGAGATAGTTTGGTTTAACCATCAATATGGATTATATCTCCATCTTGTTTGGTGGTTGCAGCATTTAACTGTTCAGCATAGGGAATTCCCTTGTCAATCAAAGTGGGGGTTTTGTTGGTTATCCTCGTGGCTCTATTCTCTATTTGTTATAGCCAAATCTCACCAACCTACATTTGATGCTGTTTCTGGAATAACTAATACTGCTGTCTTTTCCCTATACGCTGATTATACTTACATATCTCCCTCTATTGTTGAAATTTCTTGCACGGAAAAGCTGGGTAGATCATTCCTGACTTCCTGTCGTTTCCATCTGCAAACAGTACTGCCTTCAATTTTTAAAGCTTCTTTTAAAGTTCTGCACAGCCATTCGATTGTGTTCTGACTAAAACTTTGACCTGCTCATCTTTTTTCTTCCACATTCAATCCAGTCTTACCAGCTTTCTTTGTCAAAGGATTTGAATCCCAACACAAAATAGATTATGTTGTTTTCCATGATATGAGTCAAGGAGAGAGAAAGAAGGGGTTGATTGTTAACCTTCAACCTTTTTTTCTCAGTTACCCAAAAAAAAAGGGGGGGGGAGGGGAGGGGTTGATGATTAACATGTAAGGTGTTAAGTGAGGTATGGAAAGCAAAATTTTCCAGTGCCAAGTCCACCGAAAAGGGTGGTTCTTCCCTCCTAGGAAGTAGGAGATAGAAGTATCTCGGTATTCGTGTCTGGGAGCATTTTTTTACACTTTTTTTCTTCTCTTTTCTAACACATCAATTTTTTTCAAGAACAGCCTTTTGAAGATAAAGATAATGTGATCTAGATTTGCATCTTCCTATTTAGCTGTGGATTAAGTGTTCCTATCCATCATGGTTTCTATTCCTATGAATGTTACGTTCTATGAGAAGTATTTTATTTTATATTCTTGCTTGTTTTCGTGAAACTTCATTGTATAACTGTATGCTGTAGCTTACAAGGTTCAGTAATAAAGGGTGTCTACAATTCATGTTGACAGGTTGTAAGAGACAAGCGGACTGGTAAGACCAGGGGATATGGATTTGTGAGTTTTTCCAATCCATTGGATCTTGCTGCGGCACTTAAAGAAATGAATG</genome_strand>
        <mrna_strand>AAAATCTCAATTCACCGGCGTTACAATGTCATCGATGCCTTCAACGTCGGCGGCAGCTACTTCATCGTCGTCGCAATTCACCTACTCGAACGGCACCTACTTTCCGACGCCTTTTCATCTCCAACAACAACCTCCTCAGCCCTACATAGGTGCTGCTCCTCCGCCCGTTCAACTTCCTGTTCCTTCCGTCTATCCTGCTCCTGCTGCTATTCCTGGCGTTTACACTTTGCCTCAGTTTCAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAACAGTTGTTCCAAAGAGACGCACAAACAATCACACCTGAAGCACTTGAAAATGTGAAAGCTGCACTTGCGAGCAGTGAAATTGAGCACAAAGCTGAGGCCAAGAAAAAAGCTGTACCGCGTAAGGCAGCAGGACATAGTTGGGAAGATCCTACTCTGGCAAAGTGGCCCGAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTATCGTCTATTCTGTGGTGATCTCGGGAATGAGGTGAATGATGATGTCCTATCAAAAGCTTTTTCAAGGTTTCCAACTTTTAATATGGCCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAAGAGACAAGCGGACTGGTAAGACCAGGGGATATGGATTTGTGAGTTTTTCCAATCCATTGGATCTTGCTGCGGCACTTAAAGAAATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550040" ref_strand="+" ref_description="SGN-E550040 [TUS-5-M11]">
      <seq>gtaaccggcctattaaactttgcaagagcaagtggcaagagagaattgaccatgaggctgtggaaagtcacaagaaccgatcacataagaaaccaaagcaagcaaagaagggtatatttcacaagtgagcatacaccagccatgataaggactcaagcagcaagatacttgaaatgtgtattaatcaatttctttaccagtccctgcctgggaaagaaggatcaaagtatagtcccaggatgctgagaggcgatttcgatgtctgcaatttgttattttcacaatggtataatatccataagttgctggttgatgtctttcttcctcaagaactctggatgatccttttaacaaaccatacattgatagattgggagaaactaatttggtttcatactaacgttgataatgtatatgttggatattaaacctaatgtgggtgtaccaaagatgatttaagttcatatttagatagtggttccattacatacgttttgttttttcattaatagggtcgcggattaaattgtattataatatgagagagaaaaataccatttactttgctgctaaactatgtaaacatcatacaggatcttttggttacgttttttaagaaactaaaaatttcttatttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="98152" stop="96805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97852" g_stop="97779" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97778" i_stop="97673" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97672" g_stop="97098" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="649" r_length="575" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E550040" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97852" e_stop="97779"/>
          <exon e_start="97672" e_stop="97098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCGGCCTATTAAACTTTGCAAGAGCAAGTGGCAAGAGAGAATTGACCATGAGGCTGTGGAAAGTCACAAGGTGAGGTTTCTCCCGCGGTGATTGTGCTACTTATATTATATTACATCATGACAGTCGCATTAACTGACTATTTTTTTTTGGTTGAATGTGTTGGATCTTGTGACAGAACCGATCACATAAGAAACCAAAGCAAGCAAAGAAGGGTATATTTCACAAGTGAGCATACACCAGCCATGATAAGGACTCAAGCAGCAAGATACTTGAAATGTGTATTAATCAATTTCTTTACCAGTCCCTGCCTGGGAAAGAAGGATCAAAGTATAGTCCCAGGATGCTGAGAGGCGATTTCGATGTCTGCAATTTGTTATTTTCACAATGGTATAATATCCATAAGTTGCTGGTTGATGTCTTTCTTCCTCAAGAACTCTGGATGATCCTTTTAACAAACCATACATTGATAGATTGGGAGAAACTAATTTGGTTTCATACTAACGTTGATAATGTATATGTTGGATATTAAACCTAATGTGGGTGTACCAAAGATGATTTAAGTTCATATTTAGATAGTGGTTCCATTACATACGTTTTGTTTTTTCATTAATAGGGTCGCGGATTAAATTGTATTATAATATGAGAGAGAAAAATACCATTTACTTTGCTGCTAAACTATGTAAACATCATACAGGATCTTTTGGTTACGTTTTTTAAGAAACTAAAAATTTCTTATTTCAAAACTGAATT</genome_strand>
        <mrna_strand>GTAACCGGCCTATTAAACTTTGCAAGAGCAAGTGGCAAGAGAGAATTGACCATGAGGCTGTGGAAAGTCACAAG..........................................................................................................AACCGATCACATAAGAAACCAAAGCAAGCAAAGAAGGGTATATTTCACAAGTGAGCATACACCAGCCATGATAAGGACTCAAGCAGCAAGATACTTGAAATGTGTATTAATCAATTTCTTTACCAGTCCCTGCCTGGGAAAGAAGGATCAAAGTATAGTCCCAGGATGCTGAGAGGCGATTTCGATGTCTGCAATTTGTTATTTTCACAATGGTATAATATCCATAAGTTGCTGGTTGATGTCTTTCTTCCTCAAGAACTCTGGATGATCCTTTTAACAAACCATACATTGATAGATTGGGAGAAACTAATTTGGTTTCATACTAACGTTGATAATGTATATGTTGGATATTAAACCTAATGTGGGTGTACCAAAGATGATTTAAGTTCATATTTAGATAGTGGTTCCATTACATACGTTTTGTTTTTTCATTAATAGGGTCGCGGATTAAATTGTATTATAATATGAGAGAGAAAAATACCATTTACTTTGCTGCTAAACTATGTAAACATCATACAGGATCTTTTGGTTACGTTTTTTAAGAAACTAAAAATTTCTTATTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228143" ref_strand="+" ref_description="SGN-E228143 [cLED-2-N10]">
      <seq>taaccggcctattaaactttgcaagagcaagtggcaagagagaattgaccatgaggctgtggaaagtcacaagaaccgatcacataagaaaccaaagcaagcaaagaagggtatatttcacaagtgagcatacaccagccatgataaggactcaagcagcaagatacttgaaatgtgtattaatcaatttctttaccagtccctgcctgggaaagaaggatcaaagtatagtcccaggatgctgagaggcgatttcgatgtctgcaatttgttattttcacaatggtataatatccataagttgctggttgatgtctttcttcctcaagaactctggatgatccttttaacaaaccatacattgatagattgggagaaactaatttggtttcatactaacgttgataatgtatatgttggatattaaacctaatgtgggtgtaccaaagatgatttaagttcatatttagatagtggttccattacatacgttttgtgttttcattaatagggtcgcggattaaattgtattataatttgagagagaaaaataccatttactttgctgctaacttatgtaacatcatacaggatcttttgggtacgttttttaagaaactaaaaattttttatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="98151" stop="96805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97851" g_stop="97779" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97778" i_stop="97673" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97672" g_stop="97098" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="647" r_length="574" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E228143" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97851" e_stop="97779"/>
          <exon e_start="97672" e_stop="97098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACCGGCCTATTAAACTTTGCAAGAGCAAGTGGCAAGAGAGAATTGACCATGAGGCTGTGGAAAGTCACAAGGTGAGGTTTCTCCCGCGGTGATTGTGCTACTTATATTATATTACATCATGACAGTCGCATTAACTGACTATTTTTTTTTGGTTGAATGTGTTGGATCTTGTGACAGAACCGATCACATAAGAAACCAAAGCAAGCAAAGAAGGGTATATTTCACAAGTGAGCATACACCAGCCATGATAAGGACTCAAGCAGCAAGATACTTGAAATGTGTATTAATCAATTTCTTTACCAGTCCCTGCCTGGGAAAGAAGGATCAAAGTATAGTCCCAGGATGCTGAGAGGCGATTTCGATGTCTGCAATTTGTTATTTTCACAATGGTATAATATCCATAAGTTGCTGGTTGATGTCTTTCTTCCTCAAGAACTCTGGATGATCCTTTTAACAAACCATACATTGATAGATTGGGAGAAACTAATTTGGTTTCATACTAACGTTGATAATGTATATGTTGGATATTAAACCTAATGTGGGTGTACCAAAGATGATTTAAGTTCATATTTAGATAGTGGTTCCATTACATACGTTTTGTTTTTTCATTAATAGGGTCGCGGATTAAATTGTATTATAATATGAGAGAGAAAAATACCATTTACTTTGCTGCTAAACTATGTAAACATCATACAGGATCTTTTGGTTACGTTTTTTAAGAAACTAAAAATTTCTTATTTCAAAACTGAATT</genome_strand>
        <mrna_strand>TAACCGGCCTATTAAACTTTGCAAGAGCAAGTGGCAAGAGAGAATTGACCATGAGGCTGTGGAAAGTCACAAG..........................................................................................................AACCGATCACATAAGAAACCAAAGCAAGCAAAGAAGGGTATATTTCACAAGTGAGCATACACCAGCCATGATAAGGACTCAAGCAGCAAGATACTTGAAATGTGTATTAATCAATTTCTTTACCAGTCCCTGCCTGGGAAAGAAGGATCAAAGTATAGTCCCAGGATGCTGAGAGGCGATTTCGATGTCTGCAATTTGTTATTTTCACAATGGTATAATATCCATAAGTTGCTGGTTGATGTCTTTCTTCCTCAAGAACTCTGGATGATCCTTTTAACAAACCATACATTGATAGATTGGGAGAAACTAATTTGGTTTCATACTAACGTTGATAATGTATATGTTGGATATTAAACCTAATGTGGGTGTACCAAAGATGATTTAAGTTCATATTTAGATAGTGGTTCCATTACATACGTTTTGTGTTTTCATTAATAGGGTCGCGGATTAAATTGTATTATAATTTGAGAGAGAAAAATACCATTTACTTTGCTGCTAACTTATGT-AACATCATACAGGATCTTTTGGGTACGTTTTTTAAGAAACTAAAAATTTTTTATTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390052" ref_strand="+" ref_description="SGN-E390052 [TUS-4-M11]">
      <seq>gtaaccggcctattaaactttgcaagagcaagtggcaagagagaattgaccatgaggctgtggaaagtcacaagaaccgatcacataagaaaccaaagcaagcaaagaagggtatatttcacaagtgagcatacaccagccatgataaggactcaagcagcaagatacttgaaatgtgtattaatcaatttctttaccagtccctgcctgggaaagaaggatcaaagtatagtcccaggatgctgagaggcgatttcgatgtctgcaatttgttattttcacaatggtataatatccataagttgctggttgatgtctttcttcctcaagaactctggatgatccttttaacaaaccatacattgatagattgggagaaactaatttggtttcatactaacgttgataatgtatatgttggatattaaacctaatgtgggtgtaccaaagatgatttaagttcatatttagatagtggttccattacatacgttttgttttttcattaatagggtcgcggattaaattgtattataatatgagagagaaaaataccatttactttgctgctaaactatgtaaacatcatacaggatcttttggttacgttttttaagaaactaaaaatttcttatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="98152" stop="96805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97852" g_stop="97779" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97778" i_stop="97673" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97672" g_stop="97099" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="648" r_length="574" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E390052" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97852" e_stop="97779"/>
          <exon e_start="97672" e_stop="97099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCGGCCTATTAAACTTTGCAAGAGCAAGTGGCAAGAGAGAATTGACCATGAGGCTGTGGAAAGTCACAAGGTGAGGTTTCTCCCGCGGTGATTGTGCTACTTATATTATATTACATCATGACAGTCGCATTAACTGACTATTTTTTTTTGGTTGAATGTGTTGGATCTTGTGACAGAACCGATCACATAAGAAACCAAAGCAAGCAAAGAAGGGTATATTTCACAAGTGAGCATACACCAGCCATGATAAGGACTCAAGCAGCAAGATACTTGAAATGTGTATTAATCAATTTCTTTACCAGTCCCTGCCTGGGAAAGAAGGATCAAAGTATAGTCCCAGGATGCTGAGAGGCGATTTCGATGTCTGCAATTTGTTATTTTCACAATGGTATAATATCCATAAGTTGCTGGTTGATGTCTTTCTTCCTCAAGAACTCTGGATGATCCTTTTAACAAACCATACATTGATAGATTGGGAGAAACTAATTTGGTTTCATACTAACGTTGATAATGTATATGTTGGATATTAAACCTAATGTGGGTGTACCAAAGATGATTTAAGTTCATATTTAGATAGTGGTTCCATTACATACGTTTTGTTTTTTCATTAATAGGGTCGCGGATTAAATTGTATTATAATATGAGAGAGAAAAATACCATTTACTTTGCTGCTAAACTATGTAAACATCATACAGGATCTTTTGGTTACGTTTTTTAAGAAACTAAAAATTTCTTATTTCAAAACTGAAT</genome_strand>
        <mrna_strand>GTAACCGGCCTATTAAACTTTGCAAGAGCAAGTGGCAAGAGAGAATTGACCATGAGGCTGTGGAAAGTCACAAG..........................................................................................................AACCGATCACATAAGAAACCAAAGCAAGCAAAGAAGGGTATATTTCACAAGTGAGCATACACCAGCCATGATAAGGACTCAAGCAGCAAGATACTTGAAATGTGTATTAATCAATTTCTTTACCAGTCCCTGCCTGGGAAAGAAGGATCAAAGTATAGTCCCAGGATGCTGAGAGGCGATTTCGATGTCTGCAATTTGTTATTTTCACAATGGTATAATATCCATAAGTTGCTGGTTGATGTCTTTCTTCCTCAAGAACTCTGGATGATCCTTTTAACAAACCATACATTGATAGATTGGGAGAAACTAATTTGGTTTCATACTAACGTTGATAATGTATATGTTGGATATTAAACCTAATGTGGGTGTACCAAAGATGATTTAAGTTCATATTTAGATAGTGGTTCCATTACATACGTTTTGTTTTTTCATTAATAGGGTCGCGGATTAAATTGTATTATAATATGAGAGAGAAAAATACCATTTACTTTGCTGCTAAACTATGTAAACATCATACAGGATCTTTTGGTTACGTTTTTTAAGAAACTAAAAATTTCTTATTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375216" ref_strand="+" ref_description="SGN-E375216 [TUS-34-B15](-)">
      <seq>gatttgtgagtttttccaatccattggatcttgctgcggcacttaaaaaaatgaatggaaagtatgttggtaaccggcctattaaactttgcaagagcaagtggcaagagagaattgaccatgaggctgtggaaagtcacaagaaccgatcacataagaaaccaaagcaagcaaagaagggtatatttcacaagtgagcatacaccagccatgataaggactcaagcagcaagatacttgaaatgtgtattaatcaatttctttaccagtccctgcctgggaaagaaggatcaaagtatagtcccaggatgctgagaggcgatttcgatgtctgcaatttgttattttcacaatggtataatatccataagttgctggttgatgtctttcttcctcaagaactctggatgatccttttaacaaaccatacattgatagattgggagaaactaatttggtttcatactaacgttgataatgtatatgttggatattaaacctaatgtgggtgtaccaaagatgatttaagtttatatttagatagtggttccattacatacgttttgttttttcattaatagggtcgcggattaaattgtattataatatgagagagaaaaataccatttactttgctgctaaactatgtaaacatcatacaggatcttttggttacgttttttaagaaactaaaaatttcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="98690" stop="96813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98390" g_stop="98334" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98333" i_stop="97865" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97864" g_stop="97779" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="143" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97778" i_stop="97673" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97672" g_stop="97101" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="715" r_length="572" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E375216" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98390" e_stop="98334"/>
          <exon e_start="97864" e_stop="97779"/>
          <exon e_start="97672" e_stop="97101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGTGAGTTTTTCCAATCCATTGGATCTTGCTGCGGCACTTAAAAAAATGAATGGCAAGTTATCTGTTATTCATTATATGTGTAGTGTCTTAGTCTCTTTTTATATAGTTTCTTGGTTCCCCTTTTCTTTGATATCTTTATGTCAACTGATTTAGTTTCATAGTAAGTGTACCCTCTATTGAGACAATGGTTTTGTATTTGAACACTCCCTCGCCCCCTCCCCTCCCCTCTCCTCTCTCCACAAAAGAAGGAATAGGTGGAGGAAATAAGTAACAGAACTCTGTACTGAGGACACTATTTCGGACTGCTTATGAAATCAGTTTAGGTAAAGAAAAGATTAGTGAGGAAAATAACAACATCAACAAACTTGTATGAGAGAATTTCGGAAGTCTGTCTCTTTTTGGAGTTTGTGAAGTGGGAAGTTCATTAATGTCTTAAGTGGCAGTTGTTTTAGTTATTGAATTGGTATAATATTATACCTAAATGCCTACTAATGATGTGGAGAAATTCATGCTATTTTCAGGAAAGTATGTTGGTAACCGGCCTATTAAACTTTGCAAGAGCAAGTGGCAAGAGAGAATTGACCATGAGGCTGTGGAAAGTCACAAGGTGAGGTTTCTCCCGCGGTGATTGTGCTACTTATATTATATTACATCATGACAGTCGCATTAACTGACTATTTTTTTTTGGTTGAATGTGTTGGATCTTGTGACAGAACCGATCACATAAGAAACCAAAGCAAGCAAAGAAGGGTATATTTCACAAGTGAGCATACACCAGCCATGATAAGGACTCAAGCAGCAAGATACTTGAAATGTGTATTAATCAATTTCTTTACCAGTCCCTGCCTGGGAAAGAAGGATCAAAGTATAGTCCCAGGATGCTGAGAGGCGATTTCGATGTCTGCAATTTGTTATTTTCACAATGGTATAATATCCATAAGTTGCTGGTTGATGTCTTTCTTCCTCAAGAACTCTGGATGATCCTTTTAACAAACCATACATTGATAGATTGGGAGAAACTAATTTGGTTTCATACTAACGTTGATAATGTATATGTTGGATATTAAACCTAATGTGGGTGTACCAAAGATGATTTAAGTTCATATTTAGATAGTGGTTCCATTACATACGTTTTGTTTTTTCATTAATAGGGTCGCGGATTAAATTGTATTATAATATGAGAGAGAAAAATACCATTTACTTTGCTGCTAAACTATGTAAACATCATACAGGATCTTTTGGTTACGTTTTTTAAGAAACTAAAAATTTCTTATTTCAAAACTGA</genome_strand>
        <mrna_strand>GATTTGTGAGTTTTTCCAATCCATTGGATCTTGCTGCGGCACTTAAAAAAATGAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTATGTTGGTAACCGGCCTATTAAACTTTGCAAGAGCAAGTGGCAAGAGAGAATTGACCATGAGGCTGTGGAAAGTCACAAG..........................................................................................................AACCGATCACATAAGAAACCAAAGCAAGCAAAGAAGGGTATATTTCACAAGTGAGCATACACCAGCCATGATAAGGACTCAAGCAGCAAGATACTTGAAATGTGTATTAATCAATTTCTTTACCAGTCCCTGCCTGGGAAAGAAGGATCAAAGTATAGTCCCAGGATGCTGAGAGGCGATTTCGATGTCTGCAATTTGTTATTTTCACAATGGTATAATATCCATAAGTTGCTGGTTGATGTCTTTCTTCCTCAAGAACTCTGGATGATCCTTTTAACAAACCATACATTGATAGATTGGGAGAAACTAATTTGGTTTCATACTAACGTTGATAATGTATATGTTGGATATTAAACCTAATGTGGGTGTACCAAAGATGATTTAAGTTTATATTTAGATAGTGGTTCCATTACATACGTTTTGTTTTTTCATTAATAGGGTCGCGGATTAAATTGTATTATAATATGAGAGAGAAAAATACCATTTACTTTGCTGCTAAACTATGTAAACATCATACAGGATCTTTTGGTTACGTTTTTTAAGAAACTAAAAATTTCTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550371" ref_strand="+" ref_description="SGN-E550371 [TUS-5-M11](-)">
      <seq>gtaaccggcctattaaactttgcaagagcaagtggcaagagagaattgaccatgaggctgtggaaagtcacaagaaccgatcacataagaaaccaaagcaagcaaagaagggtatatttcacaagtgagcatacaccagccatgataaggactcaagcagcaagatacttgaaatgtgtattaatcaatttctttaccagtccctgcctgggaaagaaggatcaaagtatagtcccaggatgctgagaggcgatttcgatgtctgcaatttgttattttcacaatggtataatatccataagttgctggttgatgtctttcttcctcaagaactctggatgatccttttaacaaaccatacattgatagattgggagaaactaatttggtttcatactaacgttgataatgtatatgttggatattaaacctaatgtgggtgtaccaaagatgatttaagttcatatttagatagtggttccattacatacgttttgttttttcattaatagggtcgcggattaaattgtattataatatgagagagaaaaataccatttgctttgctgctaaactatgtaaacatcatgaaggatcttttgttacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="98152" stop="96837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97852" g_stop="97779" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97778" i_stop="97673" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97672" g_stop="97137" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="609" r_length="535" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E550371" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97852" e_stop="97779"/>
          <exon e_start="97672" e_stop="97137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCGGCCTATTAAACTTTGCAAGAGCAAGTGGCAAGAGAGAATTGACCATGAGGCTGTGGAAAGTCACAAGGTGAGGTTTCTCCCGCGGTGATTGTGCTACTTATATTATATTACATCATGACAGTCGCATTAACTGACTATTTTTTTTTGGTTGAATGTGTTGGATCTTGTGACAGAACCGATCACATAAGAAACCAAAGCAAGCAAAGAAGGGTATATTTCACAAGTGAGCATACACCAGCCATGATAAGGACTCAAGCAGCAAGATACTTGAAATGTGTATTAATCAATTTCTTTACCAGTCCCTGCCTGGGAAAGAAGGATCAAAGTATAGTCCCAGGATGCTGAGAGGCGATTTCGATGTCTGCAATTTGTTATTTTCACAATGGTATAATATCCATAAGTTGCTGGTTGATGTCTTTCTTCCTCAAGAACTCTGGATGATCCTTTTAACAAACCATACATTGATAGATTGGGAGAAACTAATTTGGTTTCATACTAACGTTGATAATGTATATGTTGGATATTAAACCTAATGTGGGTGTACCAAAGATGATTTAAGTTCATATTTAGATAGTGGTTCCATTACATACGTTTTGTTTTTTCATTAATAGGGTCGCGGATTAAATTGTATTATAATATGAGAGAGAAAAATACCATTTACTTTGCTGCTAAACTATGTAAACATCATACAGGATCTTTTGGTTACGTT</genome_strand>
        <mrna_strand>GTAACCGGCCTATTAAACTTTGCAAGAGCAAGTGGCAAGAGAGAATTGACCATGAGGCTGTGGAAAGTCACAAG..........................................................................................................AACCGATCACATAAGAAACCAAAGCAAGCAAAGAAGGGTATATTTCACAAGTGAGCATACACCAGCCATGATAAGGACTCAAGCAGCAAGATACTTGAAATGTGTATTAATCAATTTCTTTACCAGTCCCTGCCTGGGAAAGAAGGATCAAAGTATAGTCCCAGGATGCTGAGAGGCGATTTCGATGTCTGCAATTTGTTATTTTCACAATGGTATAATATCCATAAGTTGCTGGTTGATGTCTTTCTTCCTCAAGAACTCTGGATGATCCTTTTAACAAACCATACATTGATAGATTGGGAGAAACTAATTTGGTTTCATACTAACGTTGATAATGTATATGTTGGATATTAAACCTAATGTGGGTGTACCAAAGATGATTTAAGTTCATATTTAGATAGTGGTTCCATTACATACGTTTTGTTTTTTCATTAATAGGGTCGCGGATTAAATTGTATTATAATATGAGAGAGAAAAATACCATTTGCTTTGCTGCTAAACTATGTAAACATCATGAAGGATCTTTT-GTTACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389649" ref_strand="+" ref_description="SGN-E389649 [TUS-4-M11](-)">
      <seq>gtaaccggcctattaaactttgcaagagcaagtggcaagagagaattgaccatgaggctgtggaaagtcacaagaaccgatcacataagaaaccaaagcaagcaaagaagggtatatttcacaagtgagcatacaccagccatgataaggactcaagcagcaagatacttgaaatgtgtattaatcaatttctttaccagtccctgcctgggaaagaaggatcaaagtatagtcccaggatgctgagaggcgatttcgatgtctgcaatttgttattttcacaatggtataatatccataagttgctggttgatgtctttcttcctcaagaactctggatgatccttttaacaaaccatacattgatagattgggagaaactaatttggtttcatactaacgttgataatgtatatgttggatattaaacctaatgtgggtgtaccaaagatgatttaagttcatatttagatagtggttccattacatacgttttgttttttcattaatagggtcgcggattaaattgtattataatatgagagagaaaaataccatttactttgctgctaaactatgtaaacatcatacaggatcttttggttacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="98152" stop="96837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97852" g_stop="97779" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97778" i_stop="97673" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97672" g_stop="97137" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="610" r_length="536" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E389649" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97852" e_stop="97779"/>
          <exon e_start="97672" e_stop="97137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACCGGCCTATTAAACTTTGCAAGAGCAAGTGGCAAGAGAGAATTGACCATGAGGCTGTGGAAAGTCACAAGGTGAGGTTTCTCCCGCGGTGATTGTGCTACTTATATTATATTACATCATGACAGTCGCATTAACTGACTATTTTTTTTTGGTTGAATGTGTTGGATCTTGTGACAGAACCGATCACATAAGAAACCAAAGCAAGCAAAGAAGGGTATATTTCACAAGTGAGCATACACCAGCCATGATAAGGACTCAAGCAGCAAGATACTTGAAATGTGTATTAATCAATTTCTTTACCAGTCCCTGCCTGGGAAAGAAGGATCAAAGTATAGTCCCAGGATGCTGAGAGGCGATTTCGATGTCTGCAATTTGTTATTTTCACAATGGTATAATATCCATAAGTTGCTGGTTGATGTCTTTCTTCCTCAAGAACTCTGGATGATCCTTTTAACAAACCATACATTGATAGATTGGGAGAAACTAATTTGGTTTCATACTAACGTTGATAATGTATATGTTGGATATTAAACCTAATGTGGGTGTACCAAAGATGATTTAAGTTCATATTTAGATAGTGGTTCCATTACATACGTTTTGTTTTTTCATTAATAGGGTCGCGGATTAAATTGTATTATAATATGAGAGAGAAAAATACCATTTACTTTGCTGCTAAACTATGTAAACATCATACAGGATCTTTTGGTTACGTT</genome_strand>
        <mrna_strand>GTAACCGGCCTATTAAACTTTGCAAGAGCAAGTGGCAAGAGAGAATTGACCATGAGGCTGTGGAAAGTCACAAG..........................................................................................................AACCGATCACATAAGAAACCAAAGCAAGCAAAGAAGGGTATATTTCACAAGTGAGCATACACCAGCCATGATAAGGACTCAAGCAGCAAGATACTTGAAATGTGTATTAATCAATTTCTTTACCAGTCCCTGCCTGGGAAAGAAGGATCAAAGTATAGTCCCAGGATGCTGAGAGGCGATTTCGATGTCTGCAATTTGTTATTTTCACAATGGTATAATATCCATAAGTTGCTGGTTGATGTCTTTCTTCCTCAAGAACTCTGGATGATCCTTTTAACAAACCATACATTGATAGATTGGGAGAAACTAATTTGGTTTCATACTAACGTTGATAATGTATATGTTGGATATTAAACCTAATGTGGGTGTACCAAAGATGATTTAAGTTCATATTTAGATAGTGGTTCCATTACATACGTTTTGTTTTTTCATTAATAGGGTCGCGGATTAAATTGTATTATAATATGAGAGAGAAAAATACCATTTACTTTGCTGCTAAACTATGTAAACATCATACAGGATCTTTTGGTTACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746370" ref_strand="+" ref_description="SGN-E746370 [GI|47104274]">
      <seq>ccgaatttttcaatcacaagaattctcaaatccctaatttagcgatcgtaaaatctcaattcaccggcgttacgatgtcatcgatgccttcaacgtcggcggcagctacttcatcgtcgtcgcaattcacctactcgaatggcacctactttccgacgccttttcatctccaacaacatcctcctcagccctacataggtgctgctcctccgcccgttcaacttcctgttccttccgtctatcctgctcctgctgttattcctggcgtttacactttgcctcagtttcaacaagctcaacagttattccaaagagacgcacaaacaattacacctgaagcacttgaaaatgtgaaagctgcacttgcgagctgtgaaattgagcacaaagctgaggccaagaagaaagctgtaccgcgtaaggcagcaggacatagttgggaagatcctactctggcagagtggcccgagaatgattatcgtctattctgtggtgatctggggaatgaggtgaatgatgatgtcctatcaaaagccttttcaaggtttccaacttttaatatggctaaggttgtaagagacaagcggactggtaagaccaggggatatggatttgtgagtttttccaatccattggatcttgctgcggcacttaaaaaaatgaatggaaagtatgttggtaaccggcctattaaactttgcaagagcaagtggcaagagagaattgaccatgaggctgtggaaagtcacaagaaccgatcacataagaaaccaaagcaagcaaagaagggtatatttcacaagtgagcatacaccagccatgataaggactcaagcagcaagatacttgaaatgtgtattaatcaatttctttaccagtccctgcctgggaaagaaggatcaaagtatagtcccaggatgctgagaggcgatttcgatgtctgcaatttgttattttcacaatggtataatatccataagttgctggttgatgtctttcttcctcaagaactctggatgatccttttaacaaaccatacattgatagattgggagaaactaatttggtttcatactaacgttgataatgtatatgttggatattaaacctaatgtgggtgtaccaaagatgatttaagttcatatttagatagtggttccattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="102632" stop="96957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102332" g_stop="102040" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102039" i_stop="101211" i_length="829">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101210" g_stop="101033" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="471" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="100408" i_length="625">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100407" g_stop="100310" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="569" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100309" i_stop="98431" i_length="1879">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98430" g_stop="98334" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="666" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98333" i_stop="97865" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97864" g_stop="97779" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="752" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97778" i_stop="97673" i_length="106">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97672" g_stop="97260" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="1165" r_length="413" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1166" polyA_stop="1178"/>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E746370" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1165</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102332" e_stop="102040"/>
          <exon e_start="101210" e_stop="101033"/>
          <exon e_start="100407" e_stop="100310"/>
          <exon e_start="98430" e_stop="98334"/>
          <exon e_start="97864" e_stop="97779"/>
          <exon e_start="97672" e_stop="97260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAATTTTTCAATCACAAGAATTCTCAAATCCCTAATTTAGCGATCGTAAAATCTCAATTCACCGGCGTTACGATGTCATCGATGCCTTCAACGTCGGCGGCAGCTACTTCATCGTCGTCGCAATTCACCTACTCGAATGGCACCTACTTTCCGACGCCTTTTCATCTCCAACAACATCCTCCTCAGCCCTACATAGGTGCTGCTCCTCCGCCCGTTCAACTTCCTGTTCCTTCCGTCTATCCTGCTCCTGCTGTTATTCCTGGCGTTTACACTTTGCCTCAGTTTCAACAAGTAAGTATTTCAAATATCAGCAAACATTGATGACCTAAAAAAGGGACAATAAACGGAAGTTATAAACACTTATATCTGAATTTCGCTCTCGTGAAAATTTGAAATTGGTTGTCAATCCTTGAGTTTTGGTTGCGTTAGAGTCAGGCTAATATCCATAGAAAGTTTACTTTATGTTAAGTTTGCGTGGGACAGGGTAATCATGAAACCTTGGCCGATATATCTGGCGGCTCGTATTGTTTGTTGACCATAATTTATGAATTCAGTTATCATAGGGAGCATATGTTGAATATCTATAAAAAAACATTTTATGCTTGTTTCTTTCTCTTGTTTGAGACAAGTCGTGAATCTAGGATATTGTGGTCTTTTACAGTGAAAGAAGTTGGGACGAGGTTGTAAATAATAGATTACCTAGAGAAATCGGTTAAAGAAATTTCCACCCAAGATTTGCATTTTTTCTATCTAAACAAGTTGATTACATGTATTTATAAATTTTAGAAATTAGAATTTGGCTGTAGTTTTGTAATATTTCCTGTGAAATTGTTGAGATAATTTCTTTTCAGAAATTAAATAAGGGTGTTGTCCAGACCAGCTTGCTTGTTGAGATCATTTTTGCTTCCTGTGTGTGCGAGTAAGTGCTTGATAAGATATCATGACAGCCAATTATAAGCTTGTTAGTTTCCTCTAGGAGGGGAACAGACGACAATTTCTGTAGAAGTATTTGCAGATGGCCTTTGTAAATAACTAGCTTTCATGGTAAGCAAGCAAGCTTGTTTTGGAAAAAAGAAGGTACCTTTTGTCATGTTTGTAAAATATGTATTCTTGTGGACAGGCTCAACAGTTATTCCAAAGAGACGCACAAACAATTACACCTGAAGCACTTGAAAATGTGAAAGCTGCACTTGCGAGCTGTGAAATTGAGCACAAAGCTGAGGCCAAGAAGAAAGCTGTACCGCGTAAGGCAGCAGGACATAGTTGGGAAGATCCTACTCTGGCAGAGTGGCCCGAGAGTAAGCCTAATTTCATTTTTCTTTTTCTTTCCTCGTCTGTCTGTGCATCACGCTTTTCATGTCTATTTATTATTCTGTTTTTTTTGGGATTACTCTAGTTCTCTCTCCTTATTGTCTTCGAAGTTTTGGGCATCAATTGAAAAGGGTACTTGTGTAATACCTTGTGCTGAAGGGTTTGGCATTAAAAATTTGGTTCAAAGTGATCCGACAGTCGTACAATTTTGGAATTTTAGGAAGAATTCAAAGATTTCAGATCTATTAGCCTAGGGTGAAGTGCTAAACTCGCTTGTCTGGATGATGTATGCTTGAAAATACACTATATGAATTTGTGTAGTTAAGTTGTGGGAGTTTTTGTCTTCTCTTTTTAATTTCTTATCTTTTTATAATCGTTCTTTTTTTTATTTTTTTGATATTTTAATATTATGCTTTGTTGGTCCACTTTCATGGATTATGGCCTGGTGCCGATAGTTTTTACTACCCAATTATCTACTTATCTTCACTAGTGATTCTCTTTGGCACTTCATCCTGTGATGGCTGTTTGCACTTATTTGTTCCTTTGTTGTTAGTATTGGTGCAAATCCTAGAGCAGCGGAATAACTAAGTTACCGTTCTGATGGTGTCACAGATGATTATCGTCTATTCTGTGGTGATCTGGGGAATGAGGTGAATGATGATGTCCTATCAAAAGCCTTTTCAAGGTTTCCAACTTTTAATATGGCTAAGGTATATGCCGTTTATATTTTCCAATAAGTTTACGTGTTTATGTTTCTGATTGTTATACATGAGTACCGTCATGAAGGGAGAGAAAATTCTTTCCATATGCTTATACAGCTACTGATAGTGTGGGTACATCGAAAGTGATGTGCATGCATTTAGTTTTGAGAGACTTCTCCTCAATTTTAACTGCGTTCTATTTCGACTTCAATAACTTTTTAGTAGTATCATTGTTGGATAAAAAATTGTATTCCTCAGGTTGTCACCGGTTCAGTAATCTCCTTCTCTTCTCCGGCATAGAATCTCACCACTGTCTCATTCCAAATTTGGGTAATGTGCCCTATTCCTTTTAATTAGATTCTCACTCTCTTTGGAATGCTATTTCCCCAACCCTTCAATAAAACTCTCGCCCAGTTTAGGTTATTTCGGAGTTCTGTCTCCTCTTCCGTCCTTATCCATCCTCTACATAATTCCCCTACTGCCTTAAAAAAGCACATGTGCAGAGGTAAACATACCAGTCTGATCCAGGTCTGTTTGATAACTGCTGTAGATTGGATAGCACCTACAGTTGGTGTCCACCATTGGAGTTGCAAGCTCTGTTTCTTCCACGACCAACTACATCTGAGTACATGTTCTGCAGCTTTCATGTAGGCGAACTCAAAAAGGAATCAGTTTTTCCCCATGTAATAGATGGTTCAGACCATGGGATTGGTTCCAGTTCAAATTAGCCCATCTATGAATTTTCTAGAGGGTCGGGATTTCAGACCCATTAGATGATTTCAGACCCATTAGTACCTGACCATAAAGGATCCTGCTCAAAGCCTCACAATGAGATAGTTTGGTGTAACCATCAATATGGATTATATCTCCATCTTGTTTTGTGGTTGCAGCATCTGACCCTCTGGAGGTCCATTTATTTCTCCAGACTGTTCAGCATAGGAATTTCCTTATAAATCAAAGTGGGGTTTTTGTTGGTTATCCTCGTGGCTCTACAATAGATGAACCTATCTATTTGTTAGCCAAATCTCACCAACCTACATCGAATGCTGTTTCTGGAATAACTTATACTGCTCTGTCTTTTCCTTATACGCTGATTATACTTACATATCGCCCCCTATTGTTGAAATTCCTTGCACGGAAAAGCCGGGTAGATAGTTCCTGAGTTCCAGTCATTTCCATCTGCAAACAGTATTGACTTTGACTTTTGAAGCTTCTTTGAGAGTTCTGCACAGCCATTCTATTGTGTTCTGACTAAAACTTGACCTGCTCATCTTTTTTCTTCCACATTCAGTCCAGTCCTACCAGCTTTCTCCGCGAGAGAAGCTTCCCGAGTTGTCAAAGGATTTGAATCCCAACGCAAAATAGATTATGTTGTTTTCCATGAAGTGAGTGAAGGAGAGAGAAAGAAGGGGTTGAATGTTAACCCTCAACCCTTTTTTTTCTCAGTTTCAAAAAAAAAAGGGGGGGGGGGTGTTGATGATTAACATGTAAGGTGTTAACTGAAGTATAGGAAACAAAATTTTACGGTGCCAAGGCCACAGGAAAGGGTGGTTCTTCCCTCTTAGGAAGTAGGAGATAGATGTAACTTGGTATTCGTTTCTGGGAGCATTTTTTACACAATTTTTTCTTCTCTGTTTCGTAATACATCAATTTTTTTCAAGAACAGCCTTTTGAAGATAATGATAATGTGATCTAGATTTGCATCTTCCTATTTAGCTGTGGATTAAGTGTTCCTATCCATCATGATTTCTGTGCCTATGACTGTTACATTCTATGAGAAGTATTATATTTTATATTCTTTCTCGCTTTCGTGAAACTTTATTGCATAGTTGTATGCTGTAGCTTACAAGGTTCAGTAATAAAGGGTGTCTAACATGGATATTGACAGGTTGTAAGAGACAAGCGGACTGGTAAGACCAGGGGATATGGATTTGTGAGTTTTTCCAATCCATTGGATCTTGCTGCGGCACTTAAAAAAATGAATGGCAAGTTATCTGTTATTCATTATATGTGTAGTGTCTTAGTCTCTTTTTATATAGTTTCTTGGTTCCCCTTTTCTTTGATATCTTTATGTCAACTGATTTAGTTTCATAGTAAGTGTACCCTCTATTGAGACAATGGTTTTGTATTTGAACACTCCCTCGCCCCCTCCCCTCCCCTCTCCTCTCTCCACAAAAGAAGGAATAGGTGGAGGAAATAAGTAACAGAACTCTGTACTGAGGACACTATTTCGGACTGCTTATGAAATCAGTTTAGGTAAAGAAAAGATTAGTGAGGAAAATAACAACATCAACAAACTTGTATGAGAGAATTTCGGAAGTCTGTCTCTTTTTGGAGTTTGTGAAGTGGGAAGTTCATTAATGTCTTAAGTGGCAGTTGTTTTAGTTATTGAATTGGTATAATATTATACCTAAATGCCTACTAATGATGTGGAGAAATTCATGCTATTTTCAGGAAAGTATGTTGGTAACCGGCCTATTAAACTTTGCAAGAGCAAGTGGCAAGAGAGAATTGACCATGAGGCTGTGGAAAGTCACAAGGTGAGGTTTCTCCCGCGGTGATTGTGCTACTTATATTATATTACATCATGACAGTCGCATTAACTGACTATTTTTTTTTGGTTGAATGTGTTGGATCTTGTGACAGAACCGATCACATAAGAAACCAAAGCAAGCAAAGAAGGGTATATTTCACAAGTGAGCATACACCAGCCATGATAAGGACTCAAGCAGCAAGATACTTGAAATGTGTATTAATCAATTTCTTTACCAGTCCCTGCCTGGGAAAGAAGGATCAAAGTATAGTCCCAGGATGCTGAGAGGCGATTTCGATGTCTGCAATTTGTTATTTTCACAATGGTATAATATCCATAAGTTGCTGGTTGATGTCTTTCTTCCTCAAGAACTCTGGATGATCCTTTTAACAAACCATACATTGATAGATTGGGAGAAACTAATTTGGTTTCATACTAACGTTGATAATGTATATGTTGGATATTAAACCTAATGTGGGTGTACCAAAGATGATTTAAGTTCATATTTAGATAGTGGTTCCATTAC</genome_strand>
        <mrna_strand>CCGAATTTTTCAATCACAAGAATTCTCAAATCCCTAATTTAGCGATCGTAAAATCTCAATTCACCGGCGTTACGATGTCATCGATGCCTTCAACGTCGGCGGCAGCTACTTCATCGTCGTCGCAATTCACCTACTCGAATGGCACCTACTTTCCGACGCCTTTTCATCTCCAACAACATCCTCCTCAGCCCTACATAGGTGCTGCTCCTCCGCCCGTTCAACTTCCTGTTCCTTCCGTCTATCCTGCTCCTGCTGTTATTCCTGGCGTTTACACTTTGCCTCAGTTTCAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAACAGTTATTCCAAAGAGACGCACAAACAATTACACCTGAAGCACTTGAAAATGTGAAAGCTGCACTTGCGAGCTGTGAAATTGAGCACAAAGCTGAGGCCAAGAAGAAAGCTGTACCGCGTAAGGCAGCAGGACATAGTTGGGAAGATCCTACTCTGGCAGAGTGGCCCGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTATCGTCTATTCTGTGGTGATCTGGGGAATGAGGTGAATGATGATGTCCTATCAAAAGCCTTTTCAAGGTTTCCAACTTTTAATATGGCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAAGAGACAAGCGGACTGGTAAGACCAGGGGATATGGATTTGTGAGTTTTTCCAATCCATTGGATCTTGCTGCGGCACTTAAAAAAATGAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTATGTTGGTAACCGGCCTATTAAACTTTGCAAGAGCAAGTGGCAAGAGAGAATTGACCATGAGGCTGTGGAAAGTCACAAG..........................................................................................................AACCGATCACATAAGAAACCAAAGCAAGCAAAGAAGGGTATATTTCACAAGTGAGCATACACCAGCCATGATAAGGACTCAAGCAGCAAGATACTTGAAATGTGTATTAATCAATTTCTTTACCAGTCCCTGCCTGGGAAAGAAGGATCAAAGTATAGTCCCAGGATGCTGAGAGGCGATTTCGATGTCTGCAATTTGTTATTTTCACAATGGTATAATATCCATAAGTTGCTGGTTGATGTCTTTCTTCCTCAAGAACTCTGGATGATCCTTTTAACAAACCATACATTGATAGATTGGGAGAAACTAATTTGGTTTCATACTAACGTTGATAATGTATATGTTGGATATTAAACCTAATGTGGGTGTACCAAAGATGATTTAAGTTCATATTTAGATAGTGGTTCCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207611" ref_strand="+" ref_description="SGN-E207611 [cLEC-32-G10]">
      <seq>tcaacttcctgttccttccgtctatcctgctcctgctgttattcctggcgtttacactttgcctcagtttcaacaagctcaacagttattccaaagagacgcacaaacaattacacctgaagcacttgaaaatgtgaaagctgcacttgcgagctgtgaaattgagcacaaagctgaggccaagaagaaagctgtaccgcgtaaggcagcaggacatagttgggaagatcctactctggcagagtggcccgagaatgattatcgtctattctgtggtgatctggggaatgaggtgaatgatgatgtcctatcaaaagccttttcaaggtttccaacttttaatatggctaaggttgtaagagacaagcggactggtaagaccaggggatatggatttgtgagtttttccaatccattggatcttgctgcggcacttaaaaaaatgaatggaaagtatgttggtaaccggcctattaaactttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="102415" stop="97530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102115" g_stop="102040" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102039" i_stop="101211" i_length="829">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101210" g_stop="101033" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="254" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="100408" i_length="625">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100407" g_stop="100310" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="352" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100309" i_stop="98431" i_length="1879">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98430" g_stop="98334" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="449" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98333" i_stop="97865" i_length="469">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97864" g_stop="97830" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="484" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E207611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102115" e_stop="102040"/>
          <exon e_start="101210" e_stop="101033"/>
          <exon e_start="100407" e_stop="100310"/>
          <exon e_start="98430" e_stop="98334"/>
          <exon e_start="97864" e_stop="97830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTCCTGTTCCTTCCGTCTATCCTGCTCCTGCTGTTATTCCTGGCGTTTACACTTTGCCTCAGTTTCAACAAGTAAGTATTTCAAATATCAGCAAACATTGATGACCTAAAAAAGGGACAATAAACGGAAGTTATAAACACTTATATCTGAATTTCGCTCTCGTGAAAATTTGAAATTGGTTGTCAATCCTTGAGTTTTGGTTGCGTTAGAGTCAGGCTAATATCCATAGAAAGTTTACTTTATGTTAAGTTTGCGTGGGACAGGGTAATCATGAAACCTTGGCCGATATATCTGGCGGCTCGTATTGTTTGTTGACCATAATTTATGAATTCAGTTATCATAGGGAGCATATGTTGAATATCTATAAAAAAACATTTTATGCTTGTTTCTTTCTCTTGTTTGAGACAAGTCGTGAATCTAGGATATTGTGGTCTTTTACAGTGAAAGAAGTTGGGACGAGGTTGTAAATAATAGATTACCTAGAGAAATCGGTTAAAGAAATTTCCACCCAAGATTTGCATTTTTTCTATCTAAACAAGTTGATTACATGTATTTATAAATTTTAGAAATTAGAATTTGGCTGTAGTTTTGTAATATTTCCTGTGAAATTGTTGAGATAATTTCTTTTCAGAAATTAAATAAGGGTGTTGTCCAGACCAGCTTGCTTGTTGAGATCATTTTTGCTTCCTGTGTGTGCGAGTAAGTGCTTGATAAGATATCATGACAGCCAATTATAAGCTTGTTAGTTTCCTCTAGGAGGGGAACAGACGACAATTTCTGTAGAAGTATTTGCAGATGGCCTTTGTAAATAACTAGCTTTCATGGTAAGCAAGCAAGCTTGTTTTGGAAAAAAGAAGGTACCTTTTGTCATGTTTGTAAAATATGTATTCTTGTGGACAGGCTCAACAGTTATTCCAAAGAGACGCACAAACAATTACACCTGAAGCACTTGAAAATGTGAAAGCTGCACTTGCGAGCTGTGAAATTGAGCACAAAGCTGAGGCCAAGAAGAAAGCTGTACCGCGTAAGGCAGCAGGACATAGTTGGGAAGATCCTACTCTGGCAGAGTGGCCCGAGAGTAAGCCTAATTTCATTTTTCTTTTTCTTTCCTCGTCTGTCTGTGCATCACGCTTTTCATGTCTATTTATTATTCTGTTTTTTTTGGGATTACTCTAGTTCTCTCTCCTTATTGTCTTCGAAGTTTTGGGCATCAATTGAAAAGGGTACTTGTGTAATACCTTGTGCTGAAGGGTTTGGCATTAAAAATTTGGTTCAAAGTGATCCGACAGTCGTACAATTTTGGAATTTTAGGAAGAATTCAAAGATTTCAGATCTATTAGCCTAGGGTGAAGTGCTAAACTCGCTTGTCTGGATGATGTATGCTTGAAAATACACTATATGAATTTGTGTAGTTAAGTTGTGGGAGTTTTTGTCTTCTCTTTTTAATTTCTTATCTTTTTATAATCGTTCTTTTTTTTATTTTTTTGATATTTTAATATTATGCTTTGTTGGTCCACTTTCATGGATTATGGCCTGGTGCCGATAGTTTTTACTACCCAATTATCTACTTATCTTCACTAGTGATTCTCTTTGGCACTTCATCCTGTGATGGCTGTTTGCACTTATTTGTTCCTTTGTTGTTAGTATTGGTGCAAATCCTAGAGCAGCGGAATAACTAAGTTACCGTTCTGATGGTGTCACAGATGATTATCGTCTATTCTGTGGTGATCTGGGGAATGAGGTGAATGATGATGTCCTATCAAAAGCCTTTTCAAGGTTTCCAACTTTTAATATGGCTAAGGTATATGCCGTTTATATTTTCCAATAAGTTTACGTGTTTATGTTTCTGATTGTTATACATGAGTACCGTCATGAAGGGAGAGAAAATTCTTTCCATATGCTTATACAGCTACTGATAGTGTGGGTACATCGAAAGTGATGTGCATGCATTTAGTTTTGAGAGACTTCTCCTCAATTTTAACTGCGTTCTATTTCGACTTCAATAACTTTTTAGTAGTATCATTGTTGGATAAAAAATTGTATTCCTCAGGTTGTCACCGGTTCAGTAATCTCCTTCTCTTCTCCGGCATAGAATCTCACCACTGTCTCATTCCAAATTTGGGTAATGTGCCCTATTCCTTTTAATTAGATTCTCACTCTCTTTGGAATGCTATTTCCCCAACCCTTCAATAAAACTCTCGCCCAGTTTAGGTTATTTCGGAGTTCTGTCTCCTCTTCCGTCCTTATCCATCCTCTACATAATTCCCCTACTGCCTTAAAAAAGCACATGTGCAGAGGTAAACATACCAGTCTGATCCAGGTCTGTTTGATAACTGCTGTAGATTGGATAGCACCTACAGTTGGTGTCCACCATTGGAGTTGCAAGCTCTGTTTCTTCCACGACCAACTACATCTGAGTACATGTTCTGCAGCTTTCATGTAGGCGAACTCAAAAAGGAATCAGTTTTTCCCCATGTAATAGATGGTTCAGACCATGGGATTGGTTCCAGTTCAAATTAGCCCATCTATGAATTTTCTAGAGGGTCGGGATTTCAGACCCATTAGATGATTTCAGACCCATTAGTACCTGACCATAAAGGATCCTGCTCAAAGCCTCACAATGAGATAGTTTGGTGTAACCATCAATATGGATTATATCTCCATCTTGTTTTGTGGTTGCAGCATCTGACCCTCTGGAGGTCCATTTATTTCTCCAGACTGTTCAGCATAGGAATTTCCTTATAAATCAAAGTGGGGTTTTTGTTGGTTATCCTCGTGGCTCTACAATAGATGAACCTATCTATTTGTTAGCCAAATCTCACCAACCTACATCGAATGCTGTTTCTGGAATAACTTATACTGCTCTGTCTTTTCCTTATACGCTGATTATACTTACATATCGCCCCCTATTGTTGAAATTCCTTGCACGGAAAAGCCGGGTAGATAGTTCCTGAGTTCCAGTCATTTCCATCTGCAAACAGTATTGACTTTGACTTTTGAAGCTTCTTTGAGAGTTCTGCACAGCCATTCTATTGTGTTCTGACTAAAACTTGACCTGCTCATCTTTTTTCTTCCACATTCAGTCCAGTCCTACCAGCTTTCTCCGCGAGAGAAGCTTCCCGAGTTGTCAAAGGATTTGAATCCCAACGCAAAATAGATTATGTTGTTTTCCATGAAGTGAGTGAAGGAGAGAGAAAGAAGGGGTTGAATGTTAACCCTCAACCCTTTTTTTTCTCAGTTTCAAAAAAAAAAGGGGGGGGGGGTGTTGATGATTAACATGTAAGGTGTTAACTGAAGTATAGGAAACAAAATTTTACGGTGCCAAGGCCACAGGAAAGGGTGGTTCTTCCCTCTTAGGAAGTAGGAGATAGATGTAACTTGGTATTCGTTTCTGGGAGCATTTTTTACACAATTTTTTCTTCTCTGTTTCGTAATACATCAATTTTTTTCAAGAACAGCCTTTTGAAGATAATGATAATGTGATCTAGATTTGCATCTTCCTATTTAGCTGTGGATTAAGTGTTCCTATCCATCATGATTTCTGTGCCTATGACTGTTACATTCTATGAGAAGTATTATATTTTATATTCTTTCTCGCTTTCGTGAAACTTTATTGCATAGTTGTATGCTGTAGCTTACAAGGTTCAGTAATAAAGGGTGTCTAACATGGATATTGACAGGTTGTAAGAGACAAGCGGACTGGTAAGACCAGGGGATATGGATTTGTGAGTTTTTCCAATCCATTGGATCTTGCTGCGGCACTTAAAAAAATGAATGGCAAGTTATCTGTTATTCATTATATGTGTAGTGTCTTAGTCTCTTTTTATATAGTTTCTTGGTTCCCCTTTTCTTTGATATCTTTATGTCAACTGATTTAGTTTCATAGTAAGTGTACCCTCTATTGAGACAATGGTTTTGTATTTGAACACTCCCTCGCCCCCTCCCCTCCCCTCTCCTCTCTCCACAAAAGAAGGAATAGGTGGAGGAAATAAGTAACAGAACTCTGTACTGAGGACACTATTTCGGACTGCTTATGAAATCAGTTTAGGTAAAGAAAAGATTAGTGAGGAAAATAACAACATCAACAAACTTGTATGAGAGAATTTCGGAAGTCTGTCTCTTTTTGGAGTTTGTGAAGTGGGAAGTTCATTAATGTCTTAAGTGGCAGTTGTTTTAGTTATTGAATTGGTATAATATTATACCTAAATGCCTACTAATGATGTGGAGAAATTCATGCTATTTTCAGGAAAGTATGTTGGTAACCGGCCTATTAAACTTTGC</genome_strand>
        <mrna_strand>TCAACTTCCTGTTCCTTCCGTCTATCCTGCTCCTGCTGTTATTCCTGGCGTTTACACTTTGCCTCAGTTTCAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAACAGTTATTCCAAAGAGACGCACAAACAATTACACCTGAAGCACTTGAAAATGTGAAAGCTGCACTTGCGAGCTGTGAAATTGAGCACAAAGCTGAGGCCAAGAAGAAAGCTGTACCGCGTAAGGCAGCAGGACATAGTTGGGAAGATCCTACTCTGGCAGAGTGGCCCGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTATCGTCTATTCTGTGGTGATCTGGGGAATGAGGTGAATGATGATGTCCTATCAAAAGCCTTTTCAAGGTTTCCAACTTTTAATATGGCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAAGAGACAAGCGGACTGGTAAGACCAGGGGATATGGATTTGTGAGTTTTTCCAATCCATTGGATCTTGCTGCGGCACTTAAAAAAATGAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTATGTTGGTAACCGGCCTATTAAACTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305081" ref_strand="+" ref_description="SGN-E305081 [cLEY-18-C19]">
      <seq>gaatttttcaatcacaagaattctcaaatccctaatttagcgatcgtaaaatctcaattcaccggcgttacgatgtcatcgatgccttcaacgtcggcggcagctacttcatcgtcgtcgcaattcacctactcgaatggcacctactttccgacgccttttcatctccaacaacatcctcctcagccctacataggtgctgctcctccgcccgttcaacttcctgttccttccgtctatcctgctcctgctgttattcctggcgtttacactttgcctcagtttcaacaagctcaacagttattccaaagagacgcacaaacaattacacctgaagcacttgaaaatgtgaaagctgcacttgcgagctgtgaaattgagcacaaagctgaggccaagaagaaagctgtaccgcgtaaggcagcaggacatagttgggaagatcctactctggcagagtggcccgagaatgattatcgtctattctgtggtgatctggggaatgaggtgaatgatgatgtcctatcaaaagccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="102630" stop="69288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102330" g_stop="102040" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102039" i_stop="101211" i_length="829">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101210" g_stop="101033" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="469" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="100408" i_length="625">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100407" g_stop="100340" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="537" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E305081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102330" e_stop="102040"/>
          <exon e_start="101210" e_stop="101033"/>
          <exon e_start="100407" e_stop="100340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTTTCAATCACAAGAATTCTCAAATCCCTAATTTAGCGATCGTAAAATCTCAATTCACCGGCGTTACGATGTCATCGATGCCTTCAACGTCGGCGGCAGCTACTTCATCGTCGTCGCAATTCACCTACTCGAATGGCACCTACTTTCCGACGCCTTTTCATCTCCAACAACATCCTCCTCAGCCCTACATAGGTGCTGCTCCTCCGCCCGTTCAACTTCCTGTTCCTTCCGTCTATCCTGCTCCTGCTGTTATTCCTGGCGTTTACACTTTGCCTCAGTTTCAACAAGTAAGTATTTCAAATATCAGCAAACATTGATGACCTAAAAAAGGGACAATAAACGGAAGTTATAAACACTTATATCTGAATTTCGCTCTCGTGAAAATTTGAAATTGGTTGTCAATCCTTGAGTTTTGGTTGCGTTAGAGTCAGGCTAATATCCATAGAAAGTTTACTTTATGTTAAGTTTGCGTGGGACAGGGTAATCATGAAACCTTGGCCGATATATCTGGCGGCTCGTATTGTTTGTTGACCATAATTTATGAATTCAGTTATCATAGGGAGCATATGTTGAATATCTATAAAAAAACATTTTATGCTTGTTTCTTTCTCTTGTTTGAGACAAGTCGTGAATCTAGGATATTGTGGTCTTTTACAGTGAAAGAAGTTGGGACGAGGTTGTAAATAATAGATTACCTAGAGAAATCGGTTAAAGAAATTTCCACCCAAGATTTGCATTTTTTCTATCTAAACAAGTTGATTACATGTATTTATAAATTTTAGAAATTAGAATTTGGCTGTAGTTTTGTAATATTTCCTGTGAAATTGTTGAGATAATTTCTTTTCAGAAATTAAATAAGGGTGTTGTCCAGACCAGCTTGCTTGTTGAGATCATTTTTGCTTCCTGTGTGTGCGAGTAAGTGCTTGATAAGATATCATGACAGCCAATTATAAGCTTGTTAGTTTCCTCTAGGAGGGGAACAGACGACAATTTCTGTAGAAGTATTTGCAGATGGCCTTTGTAAATAACTAGCTTTCATGGTAAGCAAGCAAGCTTGTTTTGGAAAAAAGAAGGTACCTTTTGTCATGTTTGTAAAATATGTATTCTTGTGGACAGGCTCAACAGTTATTCCAAAGAGACGCACAAACAATTACACCTGAAGCACTTGAAAATGTGAAAGCTGCACTTGCGAGCTGTGAAATTGAGCACAAAGCTGAGGCCAAGAAGAAAGCTGTACCGCGTAAGGCAGCAGGACATAGTTGGGAAGATCCTACTCTGGCAGAGTGGCCCGAGAGTAAGCCTAATTTCATTTTTCTTTTTCTTTCCTCGTCTGTCTGTGCATCACGCTTTTCATGTCTATTTATTATTCTGTTTTTTTTGGGATTACTCTAGTTCTCTCTCCTTATTGTCTTCGAAGTTTTGGGCATCAATTGAAAAGGGTACTTGTGTAATACCTTGTGCTGAAGGGTTTGGCATTAAAAATTTGGTTCAAAGTGATCCGACAGTCGTACAATTTTGGAATTTTAGGAAGAATTCAAAGATTTCAGATCTATTAGCCTAGGGTGAAGTGCTAAACTCGCTTGTCTGGATGATGTATGCTTGAAAATACACTATATGAATTTGTGTAGTTAAGTTGTGGGAGTTTTTGTCTTCTCTTTTTAATTTCTTATCTTTTTATAATCGTTCTTTTTTTTATTTTTTTGATATTTTAATATTATGCTTTGTTGGTCCACTTTCATGGATTATGGCCTGGTGCCGATAGTTTTTACTACCCAATTATCTACTTATCTTCACTAGTGATTCTCTTTGGCACTTCATCCTGTGATGGCTGTTTGCACTTATTTGTTCCTTTGTTGTTAGTATTGGTGCAAATCCTAGAGCAGCGGAATAACTAAGTTACCGTTCTGATGGTGTCACAGATGATTATCGTCTATTCTGTGGTGATCTGGGGAATGAGGTGAATGATGATGTCCTATCAAAAGCCTTT</genome_strand>
        <mrna_strand>GAATTTTTCAATCACAAGAATTCTCAAATCCCTAATTTAGCGATCGTAAAATCTCAATTCACCGGCGTTACGATGTCATCGATGCCTTCAACGTCGGCGGCAGCTACTTCATCGTCGTCGCAATTCACCTACTCGAATGGCACCTACTTTCCGACGCCTTTTCATCTCCAACAACATCCTCCTCAGCCCTACATAGGTGCTGCTCCTCCGCCCGTTCAACTTCCTGTTCCTTCCGTCTATCCTGCTCCTGCTGTTATTCCTGGCGTTTACACTTTGCCTCAGTTTCAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAACAGTTATTCCAAAGAGACGCACAAACAATTACACCTGAAGCACTTGAAAATGTGAAAGCTGCACTTGCGAGCTGTGAAATTGAGCACAAAGCTGAGGCCAAGAAGAAAGCTGTACCGCGTAAGGCAGCAGGACATAGTTGGGAAGATCCTACTCTGGCAGAGTGGCCCGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTATCGTCTATTCTGTGGTGATCTGGGGAATGAGGTGAATGATGATGTCCTATCAAAAGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303756" ref_strand="+" ref_description="SGN-E303756 [cLEX-4-A6]">
      <seq>tccgttttttcgaatttttcaatcacaagaattctcaaatccctaatttagcgatcgtaaaatctcaattcaccggcgttacgatgtcatcgatgccttcaacgtcggcggcagctacttcatcgtcgtcgcaattcacctactcgaatggcacctactttccgacgccttttcatctccaacaacatcctcctcagccctacataggtgctgctcctccgcccgttcaacttcctgttccttccgtctatcctgctcctgctgttattcctggcgtttacactttgcctcagtttcaacaagctcaacagttattccaaagagacgcacaaacaattacacctgaagcacttgaaaatgtgaaagctgcacttgcgagctgtgaaattgagcacaaagctgaggccaagaagaaagctgtaccgcgtaaggcagcaggacatagttgggaagatcctactctggcagagtggcccgagaatgattatcgtctattctgtggtgatctggggaatgaggtgaatgatgatgtcctatcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="-" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="102641" stop="69294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102341" g_stop="102040" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102039" i_stop="101211" i_length="829">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101210" g_stop="101033" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="480" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101032" i_stop="100408" i_length="625">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.273" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100407" g_stop="100345" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="543" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="-" ref_id="SGN-E303756" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102341" e_stop="102040"/>
          <exon e_start="101210" e_stop="101033"/>
          <exon e_start="100407" e_stop="100345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTTTTTCCGAATTTTTCAATCACAAGAATTCTCAAATCCCTAATTTAGCGATCGTAAAATCTCAATTCACCGGCGTTACGATGTCATCGATGCCTTCAACGTCGGCGGCAGCTACTTCATCGTCGTCGCAATTCACCTACTCGAATGGCACCTACTTTCCGACGCCTTTTCATCTCCAACAACATCCTCCTCAGCCCTACATAGGTGCTGCTCCTCCGCCCGTTCAACTTCCTGTTCCTTCCGTCTATCCTGCTCCTGCTGTTATTCCTGGCGTTTACACTTTGCCTCAGTTTCAACAAGTAAGTATTTCAAATATCAGCAAACATTGATGACCTAAAAAAGGGACAATAAACGGAAGTTATAAACACTTATATCTGAATTTCGCTCTCGTGAAAATTTGAAATTGGTTGTCAATCCTTGAGTTTTGGTTGCGTTAGAGTCAGGCTAATATCCATAGAAAGTTTACTTTATGTTAAGTTTGCGTGGGACAGGGTAATCATGAAACCTTGGCCGATATATCTGGCGGCTCGTATTGTTTGTTGACCATAATTTATGAATTCAGTTATCATAGGGAGCATATGTTGAATATCTATAAAAAAACATTTTATGCTTGTTTCTTTCTCTTGTTTGAGACAAGTCGTGAATCTAGGATATTGTGGTCTTTTACAGTGAAAGAAGTTGGGACGAGGTTGTAAATAATAGATTACCTAGAGAAATCGGTTAAAGAAATTTCCACCCAAGATTTGCATTTTTTCTATCTAAACAAGTTGATTACATGTATTTATAAATTTTAGAAATTAGAATTTGGCTGTAGTTTTGTAATATTTCCTGTGAAATTGTTGAGATAATTTCTTTTCAGAAATTAAATAAGGGTGTTGTCCAGACCAGCTTGCTTGTTGAGATCATTTTTGCTTCCTGTGTGTGCGAGTAAGTGCTTGATAAGATATCATGACAGCCAATTATAAGCTTGTTAGTTTCCTCTAGGAGGGGAACAGACGACAATTTCTGTAGAAGTATTTGCAGATGGCCTTTGTAAATAACTAGCTTTCATGGTAAGCAAGCAAGCTTGTTTTGGAAAAAAGAAGGTACCTTTTGTCATGTTTGTAAAATATGTATTCTTGTGGACAGGCTCAACAGTTATTCCAAAGAGACGCACAAACAATTACACCTGAAGCACTTGAAAATGTGAAAGCTGCACTTGCGAGCTGTGAAATTGAGCACAAAGCTGAGGCCAAGAAGAAAGCTGTACCGCGTAAGGCAGCAGGACATAGTTGGGAAGATCCTACTCTGGCAGAGTGGCCCGAGAGTAAGCCTAATTTCATTTTTCTTTTTCTTTCCTCGTCTGTCTGTGCATCACGCTTTTCATGTCTATTTATTATTCTGTTTTTTTTGGGATTACTCTAGTTCTCTCTCCTTATTGTCTTCGAAGTTTTGGGCATCAATTGAAAAGGGTACTTGTGTAATACCTTGTGCTGAAGGGTTTGGCATTAAAAATTTGGTTCAAAGTGATCCGACAGTCGTACAATTTTGGAATTTTAGGAAGAATTCAAAGATTTCAGATCTATTAGCCTAGGGTGAAGTGCTAAACTCGCTTGTCTGGATGATGTATGCTTGAAAATACACTATATGAATTTGTGTAGTTAAGTTGTGGGAGTTTTTGTCTTCTCTTTTTAATTTCTTATCTTTTTATAATCGTTCTTTTTTTTATTTTTTTGATATTTTAATATTATGCTTTGTTGGTCCACTTTCATGGATTATGGCCTGGTGCCGATAGTTTTTACTACCCAATTATCTACTTATCTTCACTAGTGATTCTCTTTGGCACTTCATCCTGTGATGGCTGTTTGCACTTATTTGTTCCTTTGTTGTTAGTATTGGTGCAAATCCTAGAGCAGCGGAATAACTAAGTTACCGTTCTGATGGTGTCACAGATGATTATCGTCTATTCTGTGGTGATCTGGGGAATGAGGTGAATGATGATGTCCTATCAAAAG</genome_strand>
        <mrna_strand>TCCGTTTTTTCGAATTTTTCAATCACAAGAATTCTCAAATCCCTAATTTAGCGATCGTAAAATCTCAATTCACCGGCGTTACGATGTCATCGATGCCTTCAACGTCGGCGGCAGCTACTTCATCGTCGTCGCAATTCACCTACTCGAATGGCACCTACTTTCCGACGCCTTTTCATCTCCAACAACATCCTCCTCAGCCCTACATAGGTGCTGCTCCTCCGCCCGTTCAACTTCCTGTTCCTTCCGTCTATCCTGCTCCTGCTGTTATTCCTGGCGTTTACACTTTGCCTCAGTTTCAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAACAGTTATTCCAAAGAGACGCACAAACAATTACACCTGAAGCACTTGAAAATGTGAAAGCTGCACTTGCGAGCTGTGAAATTGAGCACAAAGCTGAGGCCAAGAAGAAAGCTGTACCGCGTAAGGCAGCAGGACATAGTTGGGAAGATCCTACTCTGGCAGAGTGGCCCGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTATCGTCTATTCTGTGGTGATCTGGGGAATGAGGTGAATGATGATGTCCTATCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335945" ref_strand="+" ref_description="SGN-E335945 [cTOE-6-E22]">
      <seq>ttagatcagtggatcaagaatattctggaggatggggaccgaacttgttagaccttggtaatggttgtgttgacaataggaaccttggtgatgctgagagatttggatttgaacctggtccaaagtttactctggaagcatttcagaagtatgctgatgactttaaggcccagtacttcaggcaaaatgaaggacaatgcccctgcttggagaacatcgagggtgaatattggcggatggtcgagaaacccactgaagagattgaggtgctttatggggctgacttggaaactggagtatttggaagtgggttccctaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="107608" stop="110678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107908" g_stop="107930" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107931" i_stop="108844" i_length="914">
            <donor d_prob="0.411" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108845" g_stop="108874" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="53" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108875" i_stop="110008" i_length="1134">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110009" g_stop="110221" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="266" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110222" i_stop="110321" i_length="100">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110322" g_stop="110378" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="323" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E335945" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107908" e_stop="107930"/>
          <exon e_start="108845" e_stop="108874"/>
          <exon e_start="110009" e_stop="110221"/>
          <exon e_start="110322" e_stop="110378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGATCAGTGGATCAAGAATATGTAAGTATATATGGTTCTGTTCTGAATTTCTAAGAAAGGTTATTTTGGTGATTTTACTGTGTATATGAATGAATGTTTTGATTAATTGGATAATTTTTGGTGAGTTGATGATCATTCTAAATTGATCATAGTTTTGATTAGGGTGTTTTACTGTTTAATTTTGTGATTTGATGTTTGTTATTATCTGTTGTCGCTTGTACTTTGATTATCGCACTGTTTAGTGTAGCTATTGTATTTTGCTGTGAAGGGTTTCGCTTTAGTTGTTTCTTTTTTGTTCTGCTTCTATGGAAACAACCTCTCTACCTTCCAAGGTAGGGGTATGGTTTGCGTATACTATAGTCATTGACTTCTTGTTTAATTTAGTTATTACTGAGTAATGAATTTGTGCTGTGGCTGAAAACTCTACTGGGTAAATTCCTTAAATAAATCTGTTGTATAGGAAACTTTGTTTTAATTCCATTATAATTCTTGAACGAACGACAACTTGCTTGGACCACATTGTTCAGGTCAGATGCAGAACACTGTTTGCATTTCACTGTTTTCGTAGATCTGTACTACTTTTGGAATCTGTGTCTGAAGTTGGAGGACTGATTCAAGAGTTTTCTTGTGTATTTATATGTATATATTTGTGCACAAGCATCAGCCACTCTTGAAAGGTTATCATATATTTGGTTGTTGTCCTTGCATGGATTTTAAACTTCACTTGGGAGGATTCATATGTTAGAAAAGATTCTCAGAGAAAAATCGTAATTATCAATTTGTGCATTCAGCTTTGGCCGTCTGATTTTTGTCTCAAGTAGCTATATATACTTCTTGAGTTTCCATATAAACCTTCGGTTTTCTTCCATATTTATGAAGGGAAGTCGAGAGTGCAGACTCTTGACTTGACTGACATGTATATTAATTTCTCGCAGTCTGGAGGATGGGGACCGAACTTGTTAGACATTGCATCAAAGAAGAAGATATGGACATTTCAGCAATTCCGCCTGGTTTTGAGTCACTTGCACCCTTCACCCTAAAACAGGTGGAAAATAATCGACTCAGGATTAATCAGTCATCCACAGCGAGTGAGTCAAAATCACATAGAAGTCAGGTAGAAACAAATATTGAAGGTAATGAAGATGTAAAGATGATGAAGTCACTTAGGCGTAAACCTGGGGTAAACTATGGGAAATATGAGAAAAGCTCAGAAGATGAATCTGGTTCTGATCAGGTTGAGTAGCTAGCCTATTACTTGCAAAAAAGTTTACTTCCGCACCTCTCATGTTCTCTTCCTCTTGTGCAGAATCCCTCTGTAAGGTCTTCACTTCCGAAAGGGGTCATCCGAGGATGTGAAGGGTGTCTCAACTGCCAAAGGGTCAGTATATGGAGTGAACTGATTTGTCTGTGTTTCATTTTATCAGCCTATTATGGGTATCTTAATTAAGCATTGGTAATTAAGATGAGATCAGCACTTAACACTCTTGTCACAAAACTGTTTAGCTGCCAATGGAGTTGAATTCACAAACATAAAGTTATAGGAGATATGAGACATTATAATAGAGAGTTGTAGGTCTATCACATGTATATGCTGTTTTAAAATTTCAAGCTTGGAACAGGTAACTGCGAGATGGCGGCCAGAGGAAGCTTCTAGGCCCGATCTTGGAGACGCTCCAGTGTTCTATCCAACTGAAAAGGTTCTATTTTAATTGGCTAATTAACTCCTTTCAGTATATCTATTTTAACACACCACACATTCACTTTTGTTATCCCATAATTTGAAGGAAGTTTTATGAGTCTTGCCTGGTCAAGTTTTCTCAACAACTTTTTCCAATCTCCAGGAATTTGAAGATACCCTGACGTATATGGCTAGCATACGCTCCAAAGCAGAGACATATGGAATTTGTCGCATAGTACCACCTGTTTCGTGGAAACCTCCATGCCCTCTTGAGGAAAAAAATGTATGGGAGAAATCCAAATTTGCTACCCGTATTCAGAGGATTGACAAACTTCAGAATCGAGATTCGATGAGAAGGATGTGGGAAGCTAATATTCATAAGAAGAAGAAAAGAAGAAGATGCTTAAAACCTGGAGTAGACCTTGGTAATGGTAGTGTTGACAATAGGAACCTTGGTGATGCTGAGAGATTTGGATTTGAACCTGGTCCAGAGTTTACTCTGGAAGCATTTCAGAAGTATGCTGATGACTTTAAGGCCCAGTACTTCAGGCAAAATGAAGGACAATGCCCCTCCTTGGAGAACATCGAGGGTGAATATTGGCGGATGGTCGAGAAACCCACTGAAGAGATTGAGGTGGCATTCATGTTGATTATCTTTTTTTACTTCTTATGGATTCCATCTAGGATGTATAACACTTCCCTCCTTTCTGTCTTCCTTTGTCATCATTTCCCAGGTGCTTTATGGGGCTGACTTGGAAACTGGAGTATTTGGAAGTGGGTTCCCTAAACAT</genome_strand>
        <mrna_strand>TTAGATCAGTGGATCAAGAATAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGAGGATGGGGACCGAACTTGTTAGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGTAATGGTTGTGTTGACAATAGGAACCTTGGTGATGCTGAGAGATTTGGATTTGAACCTGGTCCAAAGTTTACTCTGGAAGCATTTCAGAAGTATGCTGATGACTTTAAGGCCCAGTACTTCAGGCAAAATGAAGGACAATGCCCCTGCTTGGAGAACATCGAGGGTGAATATTGGCGGATGGTCGAGAAACCCACTGAAGAGATTGAG....................................................................................................GTGCTTTATGGGGCTGACTTGGAAACTGGAGTATTTGGAAGTGGGTTCCCTAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248142" ref_strand="+" ref_description="SGN-E248142 [cLEF-55-G19]">
      <seq>gttccctaaacatgaccatcaagttggctcttctgacaccaagtatctgaactcatggtggaacttgaataattttccaaggcttaccggttctgttcttacatatgagagcagtgatatatctggtgtcttggtgccgtggctgtacataggaatgtgcttttcatcgttctgttggcatgttgaagatcaccatttatactcattaaattacatgcatttcggggctccaaaaatgtggtatggtgtgcctggcgcagatgcatcaaagttggaggctgctatgaggaaacacttacctgatctctttgaagagcagccagatcttcttcacaagctggttacacaactatctccctccatattgaagtctgagggagtcccagtgtatcgttgtgtgcaaaatcctggagagtttgttttgaccttcccaagagcatatcatgctggtttcaattgtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="110066" stop="112147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110366" g_stop="110543" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110544" i_stop="111189" i_length="646">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111190" g_stop="111351" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="340" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111352" i_stop="111724" i_length="373">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111725" g_stop="111847" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="463" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E248142" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110366" e_stop="110543"/>
          <exon e_start="111190" e_stop="111351"/>
          <exon e_start="111725" e_stop="111847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCCTAAACATGACCATCAAGTTGGCTCTTCTGACACCAAGTATCTGAACTCAGGGTGGAACTTGAATAATTTTCCAAGGCTTACCGGTTCTGTTCTTACATATGAGAGCAGTGATATATCTGGTGTCTTGGTGCCGTGGCTGTACATAGGAATGTGCTTTTCATCGTTCTGTTGGGTAAGTGAAATAGTTCCCCTCAATTGCTTCATAATGTACTGTGGTAAACTGAAGTTTATTGGGTGCAATTACCTGAGCAACTCTTTCTGTGGACTGCGTAGATCTGCAGGTGCTTCTTTCTTTTTAATAGGTTGCTCTGACATGTTGAAAAATAATTAGCACTTACCTTTTTCATATGCATCTTTCCTACAATTTTGTTTTGAGCCCGTAAGCTTCTTTACTACAAAATCTTCCACTTATGCTAAAAAACTTCTAAATAATGTTTTTTTTTCAGAAAAAGAACTTGTAAAACCTTCAATAAGACTAGAAATATGCATAATTGCTGATCGAATAAATCTCCTGATCATGTTTATTGAACTATTGATGGGTGGTATTAGTGATTGCTTGATTGTGATTATTCCTTCCTCTTGCATTGCGGAGTAAAGGCAGTATTCTTGAGTTCATATTTTTGGAAAATAAGTACCATTTGTTATTGGGTCAGCTCTTGATAATCCTTTTCTCTTGAATTGGGTAACCCTAATTTAGTTAGCTTGAAATATATGATTTGGATGATCATTCTTTTCTTTAATAACCTGAAAATATAACAAACCTTGGGCTTTTCTCTTATTTACTAACCAATTCTCTTTTCTAAATTTTTACTCGACAGCATGTTGAAGATCACCATTTATACTCATTAAATTACATGCATTTCGGGGCTCCAAAAATGTGGTATGGTGTGCCTGGCGCAGATGCATCAAAGTTGGAGGCTGCTATGAGGAAACACTTACCTGATCTCTTTGAAGAGCAGCCAGATCTTCTTCACAAGCTGGTGAGCCCAATCTTCATTTTATCAAAAAAGTAATTGAATCCTAATTACTTGTCTCTTTGTTGGTAATCTTTGTTTAAAAATGACTTACTTTGCTGAAGAACCTCTACTACTGCCACGTCTTTTTAGGGTTGTGAGCTACAGGTGACATGTGATCCCATTCATAGTGTTGCAATGCTATAGGGTCCTCATTAAATTGAAGTGTAAACAAGAAACTGTCTTACTGTAAATCTTACTCTTCTTGTGGAAGATTTGTCTGATGAGTCATGTAGTAGATTGTTCTTTACAAATCTGACAGTTAATTTGCTTCATAGAAGTTGGAACATCTCCTTATAGGTGGCTTATTTTTTTAAATAATAACCTATTATTTATGCAGGTTACACAACTATCTCCCTCCATATTGAAGTCTGAGGGAGTCCCAGTGTATCGTTGTGTGCAAAATCCTGGAGAGTTTGTTTTGACCTTCCCAAGAGCATATCATGCTGGTTTCAATTGTGGC</genome_strand>
        <mrna_strand>GTTCCCTAAACATGACCATCAAGTTGGCTCTTCTGACACCAAGTATCTGAACTCATGGTGGAACTTGAATAATTTTCCAAGGCTTACCGGTTCTGTTCTTACATATGAGAGCAGTGATATATCTGGTGTCTTGGTGCCGTGGCTGTACATAGGAATGTGCTTTTCATCGTTCTGTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTTGAAGATCACCATTTATACTCATTAAATTACATGCATTTCGGGGCTCCAAAAATGTGGTATGGTGTGCCTGGCGCAGATGCATCAAAGTTGGAGGCTGCTATGAGGAAACACTTACCTGATCTCTTTGAAGAGCAGCCAGATCTTCTTCACAAGCTG.....................................................................................................................................................................................................................................................................................................................................................................................GTTACACAACTATCTCCCTCCATATTGAAGTCTGAGGGAGTCCCAGTGTATCGTTGTGTGCAAAATCCTGGAGAGTTTGTTTTGACCTTCCCAAGAGCATATCATGCTGGTTTCAATTGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211561" ref_strand="+" ref_description="SGN-E211561 [cLEC-67-I1]">
      <seq>cagatcttcttcacaagctggttacacaactatctccctccatattgaagtctgagggagtcccagtgtatcgttgtgtgcaaaatcctggagagtttgttttgaccttcccaagagcatatcatgctggtttcaattgtggcttcaattgtgctgaagcagtaaatgttgctcctgttgattggttaccccatgggcagaatgcgattgagcattaccgcgagcaaggacggaaaacttccatatcccatgataaactattattaggagcagctcgagatgcagtcaaagcgcactgggaacttaatttattgaggaagaatacctcaaataatttaagatggaaagatgtttgcggaaaagatggagttttgtcaaaagcattgaagaaccgagttgagatggagagagtcaggagggagtttctttgcaattcttcacaagcactaaagatggagagcacttttgatgctactaatgagagggaatgtagtgtgtgtttttttgatctacacctgtccgcagccggctgtcacaattgttcgcccgacaaatatgcatgcttgaaccatgcaaaacaactgtgtacttgttcctggggtgccaaatttttcctcttccgttatgacatcaatgaattaaatgtactagttgatgctttagaagggaaattgagtgcaatttatcgatgggcaagacaagatcttggattagctttgagttcttatgtaaataaagagcggcagttgcaggnattgctggtaattatctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="111032" stop="113096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111332" g_stop="111351" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111352" i_stop="111724" i_length="373">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111725" g_stop="112093" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="389" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112094" i_stop="112409" i_length="316">
            <donor d_prob="0.704" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112410" g_stop="112796" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="774" r_length="385" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E211561" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111332" e_stop="111351"/>
          <exon e_start="111725" e_stop="112093"/>
          <exon e_start="112410" e_stop="112796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCTTCTTCACAAGCTGGTGAGCCCAATCTTCATTTTATCAAAAAAGTAATTGAATCCTAATTACTTGTCTCTTTGTTGGTAATCTTTGTTTAAAAATGACTTACTTTGCTGAAGAACCTCTACTACTGCCACGTCTTTTTAGGGTTGTGAGCTACAGGTGACATGTGATCCCATTCATAGTGTTGCAATGCTATAGGGTCCTCATTAAATTGAAGTGTAAACAAGAAACTGTCTTACTGTAAATCTTACTCTTCTTGTGGAAGATTTGTCTGATGAGTCATGTAGTAGATTGTTCTTTACAAATCTGACAGTTAATTTGCTTCATAGAAGTTGGAACATCTCCTTATAGGTGGCTTATTTTTTTAAATAATAACCTATTATTTATGCAGGTTACACAACTATCTCCCTCCATATTGAAGTCTGAGGGAGTCCCAGTGTATCGTTGTGTGCAAAATCCTGGAGAGTTTGTTTTGACCTTCCCAAGAGCATATCATGCTGGTTTCAATTGTGGCTTCAATTGTGCTGAAGCAGTAAATGTTGCTCCTGTTGATTGGTTACCCCATGGGCAGAATGCGATTGAGCATTACCGCGAGCAAGGACGGAAAACTTCCATATCCCATGATAAACTATTATTAGGAGCAGCTCGAGATGCAGTCAAAGCGCACTGGGAACTTAATTTATTGAGGAAGAATACCTCAAATAATTTAAGATGGAAAGATGTTTGCGGAAAAGATGGAGTTTTGTCAAAAGCATTGAAGGTAGAATTTTTCGAATAGAATAGTTGCATTCTTTAGGCAAATGTGCACATAGTGACGCCCTTATTCTATCTATAGATAGTCCTTAATTCCTTTTCCATTTCCCTCTGTTTTTACTTTTGTTGCATTGAGGGTGTATTTTCCTATCTTCTTCCTTGTATTCTTTTTTTAAAATAGAAGGGTGGGGTGGGGGGTGATTGGGGTTAGACCGACACTTATAGGGGTTATCACACTGATACCACATTTAAGTTCTATGTTCATATAAATTATGTTACTAAGCCTAGTATACAACTTCACTGCTAAGTTATGTTTTGTGCAGAACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGCAAGTTGCAGGGATTGCTGGTAAATTATCTCTT</genome_strand>
        <mrna_strand>CAGATCTTCTTCACAAGCTG.....................................................................................................................................................................................................................................................................................................................................................................................GTTACACAACTATCTCCCTCCATATTGAAGTCTGAGGGAGTCCCAGTGTATCGTTGTGTGCAAAATCCTGGAGAGTTTGTTTTGACCTTCCCAAGAGCATATCATGCTGGTTTCAATTGTGGCTTCAATTGTGCTGAAGCAGTAAATGTTGCTCCTGTTGATTGGTTACCCCATGGGCAGAATGCGATTGAGCATTACCGCGAGCAAGGACGGAAAACTTCCATATCCCATGATAAACTATTATTAGGAGCAGCTCGAGATGCAGTCAAAGCGCACTGGGAACTTAATTTATTGAGGAAGAATACCTCAAATAATTTAAGATGGAAAGATGTTTGCGGAAAAGATGGAGTTTTGTCAAAAGCATTGAAG............................................................................................................................................................................................................................................................................................................................AACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGC-AGTTGCAGGNATTGCTGGT-AATTATCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248579" ref_strand="+" ref_description="SGN-E248579 [cLEF-58-A21]">
      <seq>aattgtgctgaagctttaaatgttgctcctgttgatgggttaccgggtgggctgaatgcgattgagcattaccgcgagcaaggacagaaaacttccatatcccatgataaactattattaggagcagctcgagatgcagtcaaagcgcactgggaacttaatttattgaggaagaattcctcaaataatttaagatggaaagatgtttgctgaaaagatggatttttgtcaaaagcattgaataaccgagttgatatggagagagtcaggagggactttctttgcaattcttcacaagcactaaagatggagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="111551" stop="112782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111851" g_stop="112093" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112094" i_stop="112409" i_length="316">
            <donor d_prob="0.704" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112410" g_stop="112482" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="316" r_length="73" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E248579" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111851" e_stop="112093"/>
          <exon e_start="112410" e_stop="112482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTGCTGAAGCAGTAAATGTTGCTCCTGTTGATTGGTTACCCCATGGGCAGAATGCGATTGAGCATTACCGCGAGCAAGGACGGAAAACTTCCATATCCCATGATAAACTATTATTAGGAGCAGCTCGAGATGCAGTCAAAGCGCACTGGGAACTTAATTTATTGAGGAAGAATACCTCAAATAATTTAAGATGGAAAGATGTTTGCGGAAAAGATGGAGTTTTGTCAAAAGCATTGAAGGTAGAATTTTTCGAATAGAATAGTTGCATTCTTTAGGCAAATGTGCACATAGTGACGCCCTTATTCTATCTATAGATAGTCCTTAATTCCTTTTCCATTTCCCTCTGTTTTTACTTTTGTTGCATTGAGGGTGTATTTTCCTATCTTCTTCCTTGTATTCTTTTTTTAAAATAGAAGGGTGGGGTGGGGGGTGATTGGGGTTAGACCGACACTTATAGGGGTTATCACACTGATACCACATTTAAGTTCTATGTTCATATAAATTATGTTACTAAGCCTAGTATACAACTTCACTGCTAAGTTATGTTTTGTGCAGAACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCA</genome_strand>
        <mrna_strand>AATTGTGCTGAAGCTTTAAATGTTGCTCCTGTTGATGGGTTACCGGGTGGGCTGAATGCGATTGAGCATTACCGCGAGCAAGGACAGAAAACTTCCATATCCCATGATAAACTATTATTAGGAGCAGCTCGAGATGCAGTCAAAGCGCACTGGGAACTTAATTTATTGAGGAAGAATTCCTCAAATAATTTAAGATGGAAAGATGTTTGCTGAAAAGATGGATTTTTGTCAAAAGCATTGAAT............................................................................................................................................................................................................................................................................................................................AACCGAGTTGATATGGAGAGAGTCAGGAGGGACTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398488" ref_strand="+" ref_description="SGN-E398488 [TUS-17-I2]">
      <seq>aaatgatggagttttgtcaaaagcattgaagaaccgagttgagatggagagagtcaggagggagtttctttgcaattcttcacaagcactaaagatggagagcacttttgatgctactaatgagagggaatgtagtgtgtgtttttttgatctacacctgtccgcagccggctgtcacaattgttcgcccgacaaatatgcatgcttgaaccatgcaaaacaactgtgtacttgttcctggggtgccaaatttttcctcttccgttatgacatcaatgaattaaatgtactagttgatgctttagaagggaaattgagtgcaatttatcgatgggcaagacaagatcttggattagctttgagttcttatgtaaataaagagcggcaagttgcagggattgctggtaaattatctcttaaacctgaggaatcagtgctaaaagaggcaagtgcaggaccctctatagcttccgtgaaaaaggaaaaagatgatggaacttcagcactcttgatgaaggccagcagcagtgctttttcaccgcataaagataaactatccagggagccattagcttcagaatcaatcaaggcgtcctctatgcctgacaatgcttctcatggaattgaggggggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="111764" stop="113312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112063" g_stop="112093" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112094" i_stop="112409" i_length="316">
            <donor d_prob="0.704" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112410" g_stop="113010" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="632" r_length="601" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E398488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112063" e_stop="112093"/>
          <exon e_start="112410" e_stop="113010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATGGAGTTTTGTCAAAAGCATTGAAGGTAGAATTTTTCGAATAGAATAGTTGCATTCTTTAGGCAAATGTGCACATAGTGACGCCCTTATTCTATCTATAGATAGTCCTTAATTCCTTTTCCATTTCCCTCTGTTTTTACTTTTGTTGCATTGAGGGTGTATTTTCCTATCTTCTTCCTTGTATTCTTTTTTTAAAATAGAAGGGTGGGGTGGGGGGTGATTGGGGTTAGACCGACACTTATAGGGGTTATCACACTGATACCACATTTAAGTTCTATGTTCATATAAATTATGTTACTAAGCCTAGTATACAACTTCACTGCTAAGTTATGTTTTGTGCAGAACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGCAAGTTGCAGGGATTGCTGGTAAATTATCTCTTAAACCTGAGGAATCAGTGCTAAAAGAGGCAAGTGCAGGACCCTCTATAGCTTCCGTGAAAAAGGAAAAAGATGATGGAACTTCAGCACTCTTGATGAAGGCCAGCAGCAGTGCTTTTTCACCGCATAAAGATAAACTATCCAGGGAGCCATTAGCTTCAGAATCAATCAAGGCGTCCTCTATGCCTGACAATGCTTCTCATGGAATTGAGGGGG</genome_strand>
        <mrna_strand>AAATGATGGAGTTTTGTCAAAAGCATTGAAG............................................................................................................................................................................................................................................................................................................................AACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGCAAGTTGCAGGGATTGCTGGTAAATTATCTCTTAAACCTGAGGAATCAGTGCTAAAAGAGGCAAGTGCAGGACCCTCTATAGCTTCCGTGAAAAAGGAAAAAGATGATGGAACTTCAGCACTCTTGATGAAGGCCAGCAGCAGTGCTTTTTCACCGCATAAAGATAAACTATCCAGGGAGCCATTAGCTTCAGAATCAATCAAGGCGTCCTCTATGCCTGACAATGCTTCTCATGGAATTGAGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379710" ref_strand="+" ref_description="SGN-E379710 [TUS-3-C16]">
      <seq>aaagatggagttttgtcaaaagcattgaagaaccgagttgagatggagagagtcaggagggagtttctttgcaattcttcacaagcactaaagatggagagcacttttgatgctactaatgagagggaatgtagtgtgtgtttttttgatctacacctgtccgcagccggctgtcacaattgttcgcccgacaaatatgcatgcttgaaccatgcaaaacaactgtgtacttgttcctggggtgccaaatttttcctcttccgttatgacatcaatgaattaaatgtactagttgatgctttagaagggaaattgagtgcaatttatcgatgggcaagacaagatcttggattagctttgagttcttatgtaaataaagagcggcaagttgcagggattgctggtaaattatctcttaaacctgaggaatcagtgctaaaagaggcaagtgcaggaccctctatagcttccgtgaaaaaggaaaaagatgatggaacttcagcactcttgatgaaggccagcagcagtgctttttcaccgcataaagataaactatccagggagccattagcttcagaatcaatcaaggcgtcctctatgcctgacaatgcttctcatggaattgagggggcacagaatggcttccagggcagaagtgatcctttaaggtgggtcctgtttatagaactccagttactcagctgtccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="111764" stop="113389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112064" g_stop="112093" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112094" i_stop="112409" i_length="316">
            <donor d_prob="0.704" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112410" g_stop="113089" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="709" r_length="679" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E379710" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112064" e_stop="112093"/>
          <exon e_start="112410" e_stop="113089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGGAGTTTTGTCAAAAGCATTGAAGGTAGAATTTTTCGAATAGAATAGTTGCATTCTTTAGGCAAATGTGCACATAGTGACGCCCTTATTCTATCTATAGATAGTCCTTAATTCCTTTTCCATTTCCCTCTGTTTTTACTTTTGTTGCATTGAGGGTGTATTTTCCTATCTTCTTCCTTGTATTCTTTTTTTAAAATAGAAGGGTGGGGTGGGGGGTGATTGGGGTTAGACCGACACTTATAGGGGTTATCACACTGATACCACATTTAAGTTCTATGTTCATATAAATTATGTTACTAAGCCTAGTATACAACTTCACTGCTAAGTTATGTTTTGTGCAGAACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGCAAGTTGCAGGGATTGCTGGTAAATTATCTCTTAAACCTGAGGAATCAGTGCTAAAAGAGGCAAGTGCAGGACCCTCTATAGCTTCCGTGAAAAAGGAAAAAGATGATGGAACTTCAGCACTCTTGATGAAGGCCAGCAGCAGTGCTTTTTCACCGCATAAAGATAAACTATCCAGGGAGCCATTAGCTTCAGAATCAATCAAGGCGTCCTCTATGCCTGACAATGCTTCTCATGGAATTGAGGGGGCACAGAATGGCTTCCAGGGCAGAAGTGAATCCTTAAAGGTGGGTCCTGTTTATAGAACTCCAGTTACTCAGCTGTCCGT</genome_strand>
        <mrna_strand>AAAGATGGAGTTTTGTCAAAAGCATTGAAG............................................................................................................................................................................................................................................................................................................................AACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGCAAGTTGCAGGGATTGCTGGTAAATTATCTCTTAAACCTGAGGAATCAGTGCTAAAAGAGGCAAGTGCAGGACCCTCTATAGCTTCCGTGAAAAAGGAAAAAGATGATGGAACTTCAGCACTCTTGATGAAGGCCAGCAGCAGTGCTTTTTCACCGCATAAAGATAAACTATCCAGGGAGCCATTAGCTTCAGAATCAATCAAGGCGTCCTCTATGCCTGACAATGCTTCTCATGGAATTGAGGGGGCACAGAATGGCTTCCAGGGCAGAAGTG-ATCCTTTAAGGTGGGTCCTGTTTATAGAACTCCAGTTACTCAGCTGTCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210474" ref_strand="+" ref_description="SGN-E210474 [cLEC-35-I22]">
      <seq>aaagatggagttttgtcaaaagcattgaagaaccgagttgagatggagagagtcaggagggagtttctttgcaattcttcacaagcactaaagatggagagcacttttgatgctactaatgagagggaatgtagtgtgtgtttttttgatctacacctgtccgcagccggctgtcacaattgttcgcccgacaaatatgcatgcttgaaccatgcaaaacaactgtgtacttgttcctggggtgccaaatttttcctcttccgttatgacatcaatgaattaaatgtactagttgatgctttagaagggaaattgagtgcaatttatcgatgggcaagacaagatcttggattagctttgagttcttatgtaaataaagagcggcaagttgcagggattgctggtaaattatctcttaaacctgaggaatcagtgctaaaagaggcaagtgcaggaccctctatagcttccgtgaaaaaggaaaaagatgatggaacttcagcactcttgatgaaggccagcagcagtgctttttcaccgcataaagataaactatccagggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0036C23-LQHEN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0036C23.1" temp_strand="+" temp_description="C04HBa0036C23.1  CT990637.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0036C23 sequenced_by:sanger upload_account_name:uk">
        <position start="111764" stop="113244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112064" g_stop="112093" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112094" i_stop="112409" i_length="316">
            <donor d_prob="0.704" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112410" g_stop="112944" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="565" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0036C23.1" gen_strand="+" ref_id="SGN-E210474" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0036C23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112064" e_stop="112093"/>
          <exon e_start="112410" e_stop="112944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGGAGTTTTGTCAAAAGCATTGAAGGTAGAATTTTTCGAATAGAATAGTTGCATTCTTTAGGCAAATGTGCACATAGTGACGCCCTTATTCTATCTATAGATAGTCCTTAATTCCTTTTCCATTTCCCTCTGTTTTTACTTTTGTTGCATTGAGGGTGTATTTTCCTATCTTCTTCCTTGTATTCTTTTTTTAAAATAGAAGGGTGGGGTGGGGGGTGATTGGGGTTAGACCGACACTTATAGGGGTTATCACACTGATACCACATTTAAGTTCTATGTTCATATAAATTATGTTACTAAGCCTAGTATACAACTTCACTGCTAAGTTATGTTTTGTGCAGAACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGCAAGTTGCAGGGATTGCTGGTAAATTATCTCTTAAACCTGAGGAATCAGTGCTAAAAGAGGCAAGTGCAGGACCCTCTATAGCTTCCGTGAAAAAGGAAAAAGATGATGGAACTTCAGCACTCTTGATGAAGGCCAGCAGCAGTGCTTTTTCACCGCATAAAGATAAACTATCCAGGGAGC</genome_strand>
        <mrna_strand>AAAGATGGAGTTTTGTCAAAAGCATTGAAG............................................................................................................................................................................................................................................................................................................................AACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGCAAGTTGCAGGGATTGCTGGTAAATTATCTCTTAAACCTGAGGAATCAGTGCTAAAAGAGGCAAGTGCAGGACCCTCTATAGCTTCCGTGAAAAAGGAAAAAGATGATGGAACTTCAGCACTCTTGATGAAGGCCAGCAGCAGTGCTTTTTCACCGCATAAAGATAAACTATCCAGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>63</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2288" PGL_stop="10617"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2288" e_stop="2661"/>
            <exon e_start="3335" e_stop="3529"/>
            <exon e_start="6233" e_stop="6355"/>
            <exon e_start="10434" e_stop="10616"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.543" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.898" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2288" e_stop="2661" e_length="374"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.543">
            <gDNA_intron_boundary i_start="2662" i_stop="3334" i_length="673"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3335" e_stop="3529" e_length="195"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="3530" i_stop="6232" i_length="2703"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6233" e_stop="6355" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.898">
            <gDNA_intron_boundary i_start="6356" i_stop="10433" i_length="4078"/>
          </intron>
          <exon e_serial="4" e_score="0.962">
            <gDNA_exon_boundary e_start="10434" e_stop="10616" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2288" stop="2661"/>
              <exon start="3335" stop="3529"/>
              <exon start="6233" stop="6355"/>
              <exon start="10434" stop="10542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2288" stop="2661"/>
              <exon start="3335" stop="3529"/>
              <exon start="6233" stop="6355"/>
              <exon start="10434" stop="10530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2296" stop="2661"/>
              <exon start="3335" stop="3529"/>
              <exon start="6233" stop="6260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2313" stop="2661"/>
              <exon start="3335" stop="3529"/>
              <exon start="6233" stop="6355"/>
              <exon start="10434" stop="10616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703438" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGATTTCTTCCATTAATGGAGATGGAAACGGTTCCCAACGGCAGTTCGCCGTCATCCACCACCACCACTACCAGCGCTGCCGTCACTACAAACGCCGCATCCGCAGCGGCGGTGGCTGCTGCCATCTCACCTAACGCACCTTCGTCAAAACTGAACCAGCTGTCCGAATCGCTCAAATTGGAGCACCAGTTCCTTCGTGTTCCCTTTGAGCATTACAAGAAGGCGATCCGCGCTAATCATCGTATTGTTGAGAAGGAACTCTCCGCTGTTATTAATGGAGTTTCAGATGCTGCTGAATCTGAAATGTCCCGTGATGATGCTGTACATCACCTTAATTCACTTGTATCCAGATTGCAAGGCCTCAAAAGAAAG : TCGGAAGAGGGGAGTCGAACAGAGAACCTGCAAGCGCAAAGATGCAGAGCACGGCTAGATCATCTAGAATCTGCTGATCCAGAAAATTTATCAGACTGGCATAACACCCGTTTGAAGCGGATACTGGTGGATTACATGCTGCGGATGTCATATTATAACACTGCTGTAAAGCTTGCTGAAAGCAGCAATATCCAG : GATCTTGTTGACGTTGATGTCTTTCATGAAGCAAAAAAGGTCATTGATGCTCTCCAAAACAAGGAGGTAACTCCTGCTTTAGCCTGGTGTGCTGATAACAAATCCAGGCTAAAGAAATCAAAG : AGCAAATTTGAATTCCAGTTGAGACTGCAAGAGTTCATAGAGTTGGTAAGATCTGAAAACATGATGCGGGCCATTACATATGCTCGGAAATATCTTTCACCTTGGGGTTCTACCCACATGAAAGAGTTGCAGCGGGTCTTGGCGACACTTGCTTTCAAGAGTAATACTGAATGTACAACTTAC</gDNA_template>
            <first_frame> L  D  F  F  H  *  W  R  W  K  R  F  P  T  A  V  R  R  H  P  P  P  P  L  P  A  L  P  S  L  Q  T  P  H  P  Q  R  R  W  L  L  P  S  H  L  T  H  L  R  Q  N  *  T  S  C  P  N  R  S  N  W  S  T  S  S  F  V  F  P  L  S  I  T  R  R  R  S  A  L  I  I  V  L  L  R  R  N  S  P  L  L  L  M  E  F  Q  M  L  L  N  L  K  C  P  V  M  M  L  Y  I  T  L  I  H  L  Y  P  D  C  K  A  S  K  E  S :   R  K  R  G  V  E  Q  R  T  C  K  R  K  D  A  E  H  G  *  I  I  *  N  L  L  I  Q  K  I  Y  Q  T  G  I  T  P  V  *  S  G  Y  W  W  I  T  C  C  G  C  H  I  I  T  L  L  *  S  L  L  K  A  A  I  S  R :   I  L  L  T  L  M  S  F  M  K  Q  K  R  S  L  M  L  S  K  T  R  R  *  L  L  L  *  P  G  V  L  I  T  N  P  G  *  R  N  Q  R :   A  N  L  N  S  S  *  D  C  K  S  S  *  S  W  *  D  L  K  T  *  C  G  P  L  H  M  L  G  N  I  F  H  L  G  V  L  P  T  *  K  S  C  S  G  S  W  R  H  L  L  S  R  V  I  L  N  V  Q  L   </first_frame>
            <second_frame>  L  I  S  S  I  N  G  D  G  N  G  S  Q  R  Q  F  A  V  I  H  H  H  H  Y  Q  R  C  R  H  Y  K  R  R  I  R  S  G  G  G  C  C  H  L  T  *  R  T  F  V  K  T  E  P  A  V  R  I  A  Q  I  G  A  P  V  P  S  C  S  L  *  A  L  Q  E  G  D  P  R  *  S  S  Y  C  *  E  G  T  L  R  C  Y  *  W  S  F  R  C  C  *  I  *  N  V  P  *  *  C  C  T  S  P  *  F  T  C  I  Q  I  A  R  P  Q  K  K   : V  G  R  G  E  S  N  R  E  P  A  S  A  K  M  Q  S  T  A  R  S  S  R  I  C  *  S  R  K  F  I  R  L  A  *  H  P  F  E  A  D  T  G  G  L  H  A  A  D  V  I  L  *  H  C  C  K  A  C  *  K  Q  Q  Y  P   : G  S  C  *  R  *  C  L  S  *  S  K  K  G  H  *  C  S  P  K  Q  G  G  N  S  C  F  S  L  V  C  *  *  Q  I  Q  A  K  E  I  K   : E  Q  I  *  I  P  V  E  T  A  R  V  H  R  V  G  K  I  *  K  H  D  A  G  H  Y  I  C  S  E  I  S  F  T  L  G  F  Y  P  H  E  R  V  A  A  G  L  G  D  T  C  F  Q  E  *  Y  *  M  Y  N  L  </second_frame>
            <third_frame>   *  F  L  P  L  M  E  M  E  T  V  P  N  G  S  S  P  S  S  T  T  T  T  T  S  A  A  V  T  T  N  A  A  S  A  A  A  V  A  A  A  I  S  P  N  A  P  S  S  K  L  N  Q  L  S  E  S  L  K  L  E  H  Q  F  L  R  V  P  F  E  H  Y  K  K  A  I  R  A  N  H  R  I  V  E  K  E  L  S  A  V  I  N  G  V  S  D  A  A  E  S  E  M  S  R  D  D  A  V  H  H  L  N  S  L  V  S  R  L  Q  G  L  K  R  K  :  S  E  E  G  S  R  T  E  N  L  Q  A  Q  R  C  R  A  R  L  D  H  L  E  S  A  D  P  E  N  L  S  D  W  H  N  T  R  L  K  R  I  L  V  D  Y  M  L  R  M  S  Y  Y  N  T  A  V  K  L  A  E  S  S  N  I  Q  :  D  L  V  D  V  D  V  F  H  E  A  K  K  V  I  D  A  L  Q  N  K  E  V  T  P  A  L  A  W  C  A  D  N  K  S  R  L  K  K  S  K  :  S  K  F  E  F  Q  L  R  L  Q  E  F  I  E  L  V  R  S  E  N  M  M  R  A  I  T  Y  A  R  K  Y  L  S  P  W  G  S  T  H  M  K  E  L  Q  R  V  L  A  T  L  A  F  K  S  N  T  E  C  T  T  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0036C23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2293" stop="2661"/>
                    <exon start="3335" stop="3529"/>
                    <exon start="6233" stop="6355"/>
                    <exon start="10434" stop="10616"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLPLMEMETVPNGSSPSSTTTTTSAAVTTNAASAAAVAAAISPNAPSSKLNQLSESLKLEHQFLRVPFEHYKKAIRANHRIVEKELSAVINGVSDAAESEMSRDDAVHHLNSLVSRLQGLKRKSEEGSRTENLQAQRCRARLDHLESADPENLSDWHNTRLKRILVDYMLRMSYYNTAVKLAESSNIQDLVDVDVFHEAKKVIDALQNKEVTPALAWCADNKSRLKKSKSKFEFQLRLQEFIELVRSENMMRAITYARKYLSPWGSTHMKELQRVLATLAFKSNTECTTY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3330" e_stop="3529"/>
            <exon e_start="6233" e_stop="6355"/>
            <exon e_start="10434" e_stop="10617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.898" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3330" e_stop="3529" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="3530" i_stop="6232" i_length="2703"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6233" e_stop="6355" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.898">
            <gDNA_intron_boundary i_start="6356" i_stop="10433" i_length="4078"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="10434" e_stop="10617" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3330" stop="3529"/>
              <exon start="6233" stop="6355"/>
              <exon start="10434" stop="10617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202057" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAGTCGGAAGAGGGGAGTCGAACAGAGAACCTGCAAGCGCAAAGATGCAGAGCACGGCTAGATCATCTAGAATCTGCTGATCCAGAAAATTTATCAGACTGGCATAACACCCGTTTGAAGCGGATACTGGTGGATTACATGCTGCGGATGTCATATTATAACACTGCTGTAAAGCTTGCTGAAAGCAGCAATATCCAG : GATCTTGTTGACGTTGATGTCTTTCATGAAGCAAAAAAGGTCATTGATGCTCTCCAAAACAAGGAGGTAACTCCTGCTTTAGCCTGGTGTGCTGATAACAAATCCAGGCTAAAGAAATCAAAG : AGCAAATTTGAATTCCAGTTGAGACTGCAAGAGTTCATAGAGTTGGTAAGATCTGAAAACATGATGCGGGCCATTACATATGCTCGGAAATATCTTTCACCTTGGGGTTCTACCCACATGAAAGAGTTGCAGCGGGTCTTGGCGACACTTGCTTTCAAGAGTAATACTGAATGTACAACTTACA</gDNA_template>
            <first_frame> I  S  R  K  R  G  V  E  Q  R  T  C  K  R  K  D  A  E  H  G  *  I  I  *  N  L  L  I  Q  K  I  Y  Q  T  G  I  T  P  V  *  S  G  Y  W  W  I  T  C  C  G  C  H  I  I  T  L  L  *  S  L  L  K  A  A  I  S  R :   I  L  L  T  L  M  S  F  M  K  Q  K  R  S  L  M  L  S  K  T  R  R  *  L  L  L  *  P  G  V  L  I  T  N  P  G  *  R  N  Q  R :   A  N  L  N  S  S  *  D  C  K  S  S  *  S  W  *  D  L  K  T  *  C  G  P  L  H  M  L  G  N  I  F  H  L  G  V  L  P  T  *  K  S  C  S  G  S  W  R  H  L  L  S  R  V  I  L  N  V  Q  L  T </first_frame>
            <second_frame>  L  V  G  R  G  E  S  N  R  E  P  A  S  A  K  M  Q  S  T  A  R  S  S  R  I  C  *  S  R  K  F  I  R  L  A  *  H  P  F  E  A  D  T  G  G  L  H  A  A  D  V  I  L  *  H  C  C  K  A  C  *  K  Q  Q  Y  P   : G  S  C  *  R  *  C  L  S  *  S  K  K  G  H  *  C  S  P  K  Q  G  G  N  S  C  F  S  L  V  C  *  *  Q  I  Q  A  K  E  I  K   : E  Q  I  *  I  P  V  E  T  A  R  V  H  R  V  G  K  I  *  K  H  D  A  G  H  Y  I  C  S  E  I  S  F  T  L  G  F  Y  P  H  E  R  V  A  A  G  L  G  D  T  C  F  Q  E  *  Y  *  M  Y  N  L   </second_frame>
            <third_frame>   *  S  E  E  G  S  R  T  E  N  L  Q  A  Q  R  C  R  A  R  L  D  H  L  E  S  A  D  P  E  N  L  S  D  W  H  N  T  R  L  K  R  I  L  V  D  Y  M  L  R  M  S  Y  Y  N  T  A  V  K  L  A  E  S  S  N  I  Q  :  D  L  V  D  V  D  V  F  H  E  A  K  K  V  I  D  A  L  Q  N  K  E  V  T  P  A  L  A  W  C  A  D  N  K  S  R  L  K  K  S  K  :  S  K  F  E  F  Q  L  R  L  Q  E  F  I  E  L  V  R  S  E  N  M  M  R  A  I  T  Y  A  R  K  Y  L  S  P  W  G  S  T  H  M  K  E  L  Q  R  V  L  A  T  L  A  F  K  S  N  T  E  C  T  T  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0036C23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3335" stop="3529"/>
                    <exon start="6233" stop="6355"/>
                    <exon start="10434" stop="10616"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEEGSRTENLQAQRCRARLDHLESADPENLSDWHNTRLKRILVDYMLRMSYYNTAVKLAESSNIQDLVDVDVFHEAKKVIDALQNKEVTPALAWCADNKSRLKKSKSKFEFQLRLQEFIELVRSENMMRAITYARKYLSPWGSTHMKELQRVLATLAFKSNTECTTY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="11902" PGL_stop="12672"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11902" e_stop="12252"/>
            <exon e_start="12378" e_stop="12397"/>
            <exon e_start="12651" e_stop="12672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.923"/>
          <exon-intron don_prob="0.942" acc_prob="0.666" e_score="0.950"/>
          <exon-only e_score="0.545"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="11902" e_stop="12252" e_length="351"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12253" i_stop="12377" i_length="125"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="12378" e_stop="12397" e_length="20"/>
          </exon>
          <intron i_serial="2" don_prob="0.942" acc_prob="0.666">
            <gDNA_intron_boundary i_start="12398" i_stop="12650" i_length="253"/>
          </intron>
          <exon e_serial="3" e_score="0.545">
            <gDNA_exon_boundary e_start="12651" e_stop="12672" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11902" stop="12252"/>
              <exon start="12378" stop="12397"/>
              <exon start="12651" stop="12672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219847" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCAGTGATCAACTCCCCCATGACTTCATGTTTTGGGGACAATTGTATATATGGGAACCCCCAAGTCTGCAAGCAGAAAATTCATAATGATGTGAACTTTAAAAGGAGTTTTTGATTTGTACAGCATATCAGTTGCATTTGAATGCACCTGTAATCCTAAAGATGCTTTTCACACACCCCTGCCCACACAACTCAGTTGCATTTAGTAGAAGATCTGAAGTACCTGTTGGCTAGTGGTCAGTTGTAGTTGGTGGCACATGTGGGGGCATTCAAGGGTGTGGTTTAACAGTCAATGAAGTTGATAGAAACTTAGCTATGTCAGAGTTAAAGCTCTAGCATAGAAAAAAAATT : AAAAAAAAAAAAAAAAAAAG : GAAGCATATGTATAGCATAAAA</gDNA_template>
            <first_frame> G  S  D  Q  L  P  H  D  F  M  F  W  G  Q  L  Y  I  W  E  P  P  S  L  Q  A  E  N  S  *  *  C  E  L  *  K  E  F  L  I  C  T  A  Y  Q  L  H  L  N  A  P  V  I  L  K  M  L  F  T  H  P  C  P  H  N  S  V  A  F  S  R  R  S  E  V  P  V  G  *  W  S  V  V  V  G  G  T  C  G  G  I  Q  G  C  G  L  T  V  N  E  V  D  R  N  L  A  M  S  E  L  K  L  *  H  R  K  K  I  :  K  K  K  K  K  K  R :   K  H  M  Y  S  I  K </first_frame>
            <second_frame>  A  V  I  N  S  P  M  T  S  C  F  G  D  N  C  I  Y  G  N  P  Q  V  C  K  Q  K  I  H  N  D  V  N  F  K  R  S  F  *  F  V  Q  H  I  S  C  I  *  M  H  L  *  S  *  R  C  F  S  H  T  P  A  H  T  T  Q  L  H  L  V  E  D  L  K  Y  L  L  A  S  G  Q  L  *  L  V  A  H  V  G  A  F  K  G  V  V  *  Q  S  M  K  L  I  E  T  *  L  C  Q  S  *  S  S  S  I  E  K  K  L :   K  K  K  K  K  K   : G  S  I  C  I  A  *   </second_frame>
            <third_frame>   Q  *  S  T  P  P  *  L  H  V  L  G  T  I  V  Y  M  G  T  P  K  S  A  S  R  K  F  I  M  M  *  T  L  K  G  V  F  D  L  Y  S  I  S  V  A  F  E  C  T  C  N  P  K  D  A  F  H  T  P  L  P  T  Q  L  S  C  I  *  *  K  I  *  S  T  C  W  L  V  V  S  C  S  W  W  H  M  W  G  H  S  R  V  W  F  N  S  Q  *  S  *  *  K  L  S  Y  V  R  V  K  A  L  A  *  K  K  N   : *  K  K  K  K  K  K  :  E  A  Y  V  *  H  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0036C23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11926" e_stop="12249"/>
            <exon e_start="12378" e_stop="12397"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.941"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="11926" e_stop="12249" e_length="324"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12250" i_stop="12377" i_length="128"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="12378" e_stop="12397" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11926" stop="12249"/>
              <exon start="12378" stop="12397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219895" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATGTTTTGGGGACAATTGTATATATGGGAACCCCCAAGTCTGCAAGCAGAAAATTCATAATGATGTGAACTTTAAAAGGAGTTTTTGATTTGTACAGCATATCAGTTGCATTTGAATGCACCTGTAATCCTAAAGATGCTTTTCACACACCCCTGCCCACACAACTCAGTTGCATTTAGTAGAAGATCTGAAGTACCTGTTGGCTAGTGGTCAGTTGTAGTTGGTGGCACATGTGGGGGCATTCAAGGGTGTGGTTTAACAGTCAATGAAGTTGATAGAAACTTAGCTATGTCAGAGTTAAAGCTCTAGCATAGAAAAAAA : AAAAAAAAAAAAAAAAAAAG</gDNA_template>
            <first_frame> F  M  F  W  G  Q  L  Y  I  W  E  P  P  S  L  Q  A  E  N  S  *  *  C  E  L  *  K  E  F  L  I  C  T  A  Y  Q  L  H  L  N  A  P  V  I  L  K  M  L  F  T  H  P  C  P  H  N  S  V  A  F  S  R  R  S  E  V  P  V  G  *  W  S  V  V  V  G  G  T  C  G  G  I  Q  G  C  G  L  T  V  N  E  V  D  R  N  L  A  M  S  E  L  K  L  *  H  R  K  K  :  K  K  K  K  K  K   </first_frame>
            <second_frame>  S  C  F  G  D  N  C  I  Y  G  N  P  Q  V  C  K  Q  K  I  H  N  D  V  N  F  K  R  S  F  *  F  V  Q  H  I  S  C  I  *  M  H  L  *  S  *  R  C  F  S  H  T  P  A  H  T  T  Q  L  H  L  V  E  D  L  K  Y  L  L  A  S  G  Q  L  *  L  V  A  H  V  G  A  F  K  G  V  V  *  Q  S  M  K  L  I  E  T  *  L  C  Q  S  *  S  S  S  I  E  K  K :   K  K  K  K  K  K  </second_frame>
            <third_frame>   H  V  L  G  T  I  V  Y  M  G  T  P  K  S  A  S  R  K  F  I  M  M  *  T  L  K  G  V  F  D  L  Y  S  I  S  V  A  F  E  C  T  C  N  P  K  D  A  F  H  T  P  L  P  T  Q  L  S  C  I  *  *  K  I  *  S  T  C  W  L  V  V  S  C  S  W  W  H  M  W  G  H  S  R  V  W  F  N  S  Q  *  S  *  *  K  L  S  Y  V  R  V  K  A  L  A  *  K  K   : K  K  K  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0036C23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="18529" PGL_stop="13122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18529" e_stop="18152"/>
            <exon e_start="13784" e_stop="13122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18529" e_stop="18152" e_length="378"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.990">
            <gDNA_intron_boundary i_start="18151" i_stop="13785" i_length="4367"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="13784" e_stop="13122" e_length="663"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18529" stop="18152"/>
              <exon start="13784" stop="13358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18381" stop="18152"/>
              <exon start="13784" stop="13122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699192" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAAATCAAACTTCAAAATCTCAATCTTTACCCTAATCTCATCACTTTCCACACACTCAAAATCCCTCATATCCATGGCCTTCCATATGGAGCTGAAACTACAGCTGATGTGCCTAGATCTTTGGAAACTCTACTAGCAACAGCTATGGATGAATTGTATGATGAAATCAAATCTTTTCTTCAAAACCTGAAACCCCATTTCGTTTTCTTTGATTTTGCTCATTGGGTTACTGAAATAGCATTAGAAATTGGGGATATCAACACTATTTGTTATAAACTTACTTCCCCTGCTACATCAGCTATTTCATTGATTCGATCTCCGGAAAAGAGTGTTTTCATGGCATCAACTGCAGCTGAAAAAGTTAGGCCACCACCAG : GTTACCCTTCTACTACTGTGGTGTTGCACGAACACGAAGCTAAGTTGCTAGAGTTTCTGTTTCAAGAATATGGCAAGGGAGTGACAATATATGAACGGTTGACAAAGGGAATGACGCTATGCGATGCAATAGCTTTGAAAACATGTCGAGAGATTGAAGGAACATTTGGTGACTACATCGCCACACAATTTAAAAAACCAGTCCTTTACACTGGACCTGTTCTTCCTGATCCTGAAAAGGGGCCTTTAGCAGAACATGGATTATCGAATTGGCTCGAGAAGTTCGAACCAGGATCGGTGGTGTTCTGTGCATTTGGAAGCCAATTGATTCTCGAAAAGAAGCAGTTTCAAGAACTTGTTTTAGGCCTTGAACTAACAGGTCTGCCATTTCTGGTAGTTCTTAAGCCACCTGAAGGAACAAATTCAGTAGAAGAAGCCCTGCCTGAGGGATTCAAAGAAAGGGTTCAAGAAAAAGGATTGGTTCTTGCTTGTTGGGTGCCTCAGTTGAAGATTTTAACTCACAAATCAGTTGGTTGTTTTGTGTCACACTGTGGTTATGGATCAATGTGGGAATCTTTAGCATTGTGTGATTGTCAATTAGTACTTTTGCCAAGTGCTAATGATCAAACTTTAAGTGCTAGGATGATGGAACAAGATCTTAAGG</gDNA_template>
            <first_frame> L  K  S  N  F  K  I  S  I  F  T  L  I  S  S  L  S  T  H  S  K  S  L  I  S  M  A  F  H  M  E  L  K  L  Q  L  M  C  L  D  L  W  K  L  Y  *  Q  Q  L  W  M  N  C  M  M  K  S  N  L  F  F  K  T  *  N  P  I  S  F  S  L  I  L  L  I  G  L  L  K  *  H  *  K  L  G  I  S  T  L  F  V  I  N  L  L  P  L  L  H  Q  L  F  H  *  F  D  L  R  K  R  V  F  S  W  H  Q  L  Q  L  K  K  L  G  H  H  Q  :  V  T  L  L  L  L  W  C  C  T  N  T  K  L  S  C  *  S  F  C  F  K  N  M  A  R  E  *  Q  Y  M  N  G  *  Q  R  E  *  R  Y  A  M  Q  *  L  *  K  H  V  E  R  L  K  E  H  L  V  T  T  S  P  H  N  L  K  N  Q  S  F  T  L  D  L  F  F  L  I  L  K  R  G  L  *  Q  N  M  D  Y  R  I  G  S  R  S  S  N  Q  D  R  W  C  S  V  H  L  E  A  N  *  F  S  K  R  S  S  F  K  N  L  F  *  A  L  N  *  Q  V  C  H  F  W  *  F  L  S  H  L  K  E  Q  I  Q  *  K  K  P  C  L  R  D  S  K  K  G  F  K  K  K  D  W  F  L  L  V  G  C  L  S  *  R  F  *  L  T  N  Q  L  V  V  L  C  H  T  V  V  M  D  Q  C  G  N  L  *  H  C  V  I  V  N  *  Y  F  C  Q  V  L  M  I  K  L  *  V  L  G  *  W  N  K  I  L  R </first_frame>
            <second_frame>  S  N  Q  T  S  K  S  Q  S  L  P  *  S  H  H  F  P  H  T  Q  N  P  S  Y  P  W  P  S  I  W  S  *  N  Y  S  *  C  A  *  I  F  G  N  S  T  S  N  S  Y  G  *  I  V  *  *  N  Q  I  F  S  S  K  P  E  T  P  F  R  F  L  *  F  C  S  L  G  Y  *  N  S  I  R  N  W  G  Y  Q  H  Y  L  L  *  T  Y  F  P  C  Y  I  S  Y  F  I  D  S  I  S  G  K  E  C  F  H  G  I  N  C  S  *  K  S  *  A  T  T  R :   L  P  F  Y  Y  C  G  V  A  R  T  R  S  *  V  A  R  V  S  V  S  R  I  W  Q  G  S  D  N  I  *  T  V  D  K  G  N  D  A  M  R  C  N  S  F  E  N  M  S  R  D  *  R  N  I  W  *  L  H  R  H  T  I  *  K  T  S  P  L  H  W  T  C  S  S  *  S  *  K  G  A  F  S  R  T  W  I  I  E  L  A  R  E  V  R  T  R  I  G  G  V  L  C  I  W  K  P  I  D  S  R  K  E  A  V  S  R  T  C  F  R  P  *  T  N  R  S  A  I  S  G  S  S  *  A  T  *  R  N  K  F  S  R  R  S  P  A  *  G  I  Q  R  K  G  S  R  K  R  I  G  S  C  L  L  G  A  S  V  E  D  F  N  S  Q  I  S  W  L  F  C  V  T  L  W  L  W  I  N  V  G  I  F  S  I  V  *  L  S  I  S  T  F  A  K  C  *  *  S  N  F  K  C  *  D  D  G  T  R  S  *   </second_frame>
            <third_frame>   Q  I  K  L  Q  N  L  N  L  Y  P  N  L  I  T  F  H  T  L  K  I  P  H  I  H  G  L  P  Y  G  A  E  T  T  A  D  V  P  R  S  L  E  T  L  L  A  T  A  M  D  E  L  Y  D  E  I  K  S  F  L  Q  N  L  K  P  H  F  V  F  F  D  F  A  H  W  V  T  E  I  A  L  E  I  G  D  I  N  T  I  C  Y  K  L  T  S  P  A  T  S  A  I  S  L  I  R  S  P  E  K  S  V  F  M  A  S  T  A  A  E  K  V  R  P  P  P   : G  Y  P  S  T  T  V  V  L  H  E  H  E  A  K  L  L  E  F  L  F  Q  E  Y  G  K  G  V  T  I  Y  E  R  L  T  K  G  M  T  L  C  D  A  I  A  L  K  T  C  R  E  I  E  G  T  F  G  D  Y  I  A  T  Q  F  K  K  P  V  L  Y  T  G  P  V  L  P  D  P  E  K  G  P  L  A  E  H  G  L  S  N  W  L  E  K  F  E  P  G  S  V  V  F  C  A  F  G  S  Q  L  I  L  E  K  K  Q  F  Q  E  L  V  L  G  L  E  L  T  G  L  P  F  L  V  V  L  K  P  P  E  G  T  N  S  V  E  E  A  L  P  E  G  F  K  E  R  V  Q  E  K  G  L  V  L  A  C  W  V  P  Q  L  K  I  L  T  H  K  S  V  G  C  F  V  S  H  C  G  Y  G  S  M  W  E  S  L  A  L  C  D  C  Q  L  V  L  L  P  S  A  N  D  Q  T  L  S  A  R  M  M  E  Q  D  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0036C23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18527" stop="18152"/>
                    <exon start="13784" stop="13123"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1038</number_coding_nucleotides>
                  <number_encoded_amino_acids>346</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIKLQNLNLYPNLITFHTLKIPHIHGLPYGAETTADVPRSLETLLATAMDELYDEIKSFLQNLKPHFVFFDFAHWVTEIALEIGDINTICYKLTSPATSAISLIRSPEKSVFMASTAAEKVRPPPGYPSTTVVLHEHEAKLLEFLFQEYGKGVTIYERLTKGMTLCDAIALKTCREIEGTFGDYIATQFKKPVLYTGPVLPDPEKGPLAEHGLSNWLEKFEPGSVVFCAFGSQLILEKKQFQELVLGLELTGLPFLVVLKPPEGTNSVEEALPEGFKERVQEKGLVLACWVPQLKILTHKSVGCFVSHCGYGSMWESLALCDCQLVLLPSANDQTLSARMMEQDLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="19901" PGL_stop="21599"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19901" e_stop="19930"/>
            <exon e_start="21168" e_stop="21599"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19901" e_stop="19930" e_length="30"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="19931" i_stop="21167" i_length="1237"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21168" e_stop="21599" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19901" stop="19930"/>
              <exon start="21168" stop="21599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19901" stop="19930"/>
              <exon start="21168" stop="21599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19901" stop="19930"/>
              <exon start="21168" stop="21523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21330" stop="21573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21330" stop="21573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21340" stop="21573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289895" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAATAGGGTTCTTCTTCGTTTAACATCG : TTGTCTCTACCAAACAATCTAATGGGTGACAAGAAGAAGGCTGGCGCTCTATTCGTGAGACTTGTTTCAACTGCTGGAACTGGATTTTTCTATGTGAAGAAGAAGACCAAAACACTTATAACAAATCAGACGAAGCTTGAATTTAGAAAGTTTGATCCTCGTGTGAATTGTCATGTTCTGTTCAAGGAAGAAAAAATGAAGTGATGCAAACTCCAAACATGGGCCAAATCTTCTTTTAACTGTTAGCTTTCATTTTTGCAGCAGCCAGTAGTGAAATTAGACAATAGGACTTTTGGCTGACTTGTTCTACAACAACAGTTTGTTTTTATTTATGCAATACTCTGAATTCGTTCGTGATCATGTTGAATGAAACATAGTTGTTGATCATATGACTGCAAAGAAAAGATTTGATTTGATCATACGATTTCAAAG</gDNA_template>
            <first_frame> F  N  R  V  L  L  R  L  T  S  :  L  S  L  P  N  N  L  M  G  D  K  K  K  A  G  A  L  F  V  R  L  V  S  T  A  G  T  G  F  F  Y  V  K  K  K  T  K  T  L  I  T  N  Q  T  K  L  E  F  R  K  F  D  P  R  V  N  C  H  V  L  F  K  E  E  K  M  K  *  C  K  L  Q  T  W  A  K  S  S  F  N  C  *  L  S  F  L  Q  Q  P  V  V  K  L  D  N  R  T  F  G  *  L  V  L  Q  Q  Q  F  V  F  I  Y  A  I  L  *  I  R  S  *  S  C  *  M  K  H  S  C  *  S  Y  D  C  K  E  K  I  *  F  D  H  T  I  S  K </first_frame>
            <second_frame>  S  I  G  F  F  F  V  *  H  R :   C  L  Y  Q  T  I  *  W  V  T  R  R  R  L  A  L  Y  S  *  D  L  F  Q  L  L  E  L  D  F  S  M  *  R  R  R  P  K  H  L  *  Q  I  R  R  S  L  N  L  E  S  L  I  L  V  *  I  V  M  F  C  S  R  K  K  K  *  S  D  A  N  S  K  H  G  P  N  L  L  L  T  V  S  F  H  F  C  S  S  Q  *  *  N  *  T  I  G  L  L  A  D  L  F  Y  N  N  S  L  F  L  F  M  Q  Y  S  E  F  V  R  D  H  V  E  *  N  I  V  V  D  H  M  T  A  K  K  R  F  D  L  I  I  R  F  Q   </second_frame>
            <third_frame>   Q  *  G  S  S  S  F  N  I   : V  V  S  T  K  Q  S  N  G  *  Q  E  E  G  W  R  S  I  R  E  T  C  F  N  C  W  N  W  I  F  L  C  E  E  E  D  Q  N  T  Y  N  K  S  D  E  A  *  I  *  K  V  *  S  S  C  E  L  S  C  S  V  Q  G  R  K  N  E  V  M  Q  T  P  N  M  G  Q  I  F  F  *  L  L  A  F  I  F  A  A  A  S  S  E  I  R  Q  *  D  F  W  L  T  C  S  T  T  T  V  C  F  Y  L  C  N  T  L  N  S  F  V  I  M  L  N  E  T  *  L  L  I  I  *  L  Q  R  K  D  L  I  *  S  Y  D  F  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0036C23.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19901" stop="19930"/>
                    <exon start="21168" stop="21371"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNRVLLRLTSLSLPNNLMGDKKKAGALFVRLVSTAGTGFFYVKKKTKTLITNQTKLEFRKFDPRVNCHVLFKEEKMK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="28316" PGL_stop="21701"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28316" e_stop="28256"/>
            <exon e_start="26976" e_stop="26699"/>
            <exon e_start="22233" e_stop="21701"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.743" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28316" e_stop="28256" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.743" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28255" i_stop="26977" i_length="1279"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26976" e_stop="26699" e_length="278"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26698" i_stop="22234" i_length="4465"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="22233" e_stop="21701" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28316" stop="28256"/>
              <exon start="26976" stop="26699"/>
              <exon start="22233" stop="22111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28300" stop="28256"/>
              <exon start="26976" stop="26699"/>
              <exon start="22233" stop="21824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22125" stop="21701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22124" stop="21701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21890" stop="21701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219331" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGTGCTTTTTGGTTCTTCGTTTAATCTTTGCCTATTGCTCGAATTGTGGTGAATCTTCG : GTTGAACCTTGAAAGAAATGGCTGAAGGTGGAGAAGAGGACTTGCCAAGGGATGCAAAGATTGTCAAAACGCTGCTAAAATCAATGGGTGTTGATGACTACGAGCCTCGAGTTGTGCATCAATTTTTGGAATTGTGGTATCGCTATGTTGTTGATGTACTGACGGATGCTCAAGTCTACTCAGAGCATGCAGGGAAGGCTTCCATTGACTCTGATGACATCAAGCTTGCCATTCAGTCAAAAGTTAATTTCAGCTTCTCACAACCCCCGCCGCGTGAG : GTCCTACTGGAGTTGGCTAGGAACAGAAACAAGATTCCATTGCCGAAATCAATTGCTGGGTCTGGAGTACCACTCCCTCCTGAACAAGATACACTGATCAACCCTAACTATCAGCTAGCTATTGCAAAGAAGCAAACTAACCAACCAGAAGAAACAGAGGAGGACGAAGAAAGCGCTGATCCCAACCCAGCTCCAAGCAAAAATCCAACTCTTTCTCATGAAAAGACAGACTTACCTCAAGGTACTCCTCAACGAGTATCCTTTCCCCTTGGCGCCAAACGTCCAAGATGATGTCTTATGCTTGATCAGCTTTAGTCACAAGAGCCTTTGTAACCGCCTGCCTATGTATTTAATCGAAGGCATTGTATACTTGTTGTTTGAACATGAAGTATGAAACTTTAAGATCCTTCTGTAACACAGTCAGTATTAGTTTAAATGCTCTCCTTCCAGTATTTATTAGACACAATTAGCAGAGAGTTGAGCTGTAAAATGAAGAATTACCTTGGCATTATCAATAGTTTTCCAACATATTC</gDNA_template>
            <first_frame> S  V  L  F  G  S  S  F  N  L  C  L  L  L  E  L  W  *  I  F   : G  *  T  L  K  E  M  A  E  G  G  E  E  D  L  P  R  D  A  K  I  V  K  T  L  L  K  S  M  G  V  D  D  Y  E  P  R  V  V  H  Q  F  L  E  L  W  Y  R  Y  V  V  D  V  L  T  D  A  Q  V  Y  S  E  H  A  G  K  A  S  I  D  S  D  D  I  K  L  A  I  Q  S  K  V  N  F  S  F  S  Q  P  P  P  R  E  :  V  L  L  E  L  A  R  N  R  N  K  I  P  L  P  K  S  I  A  G  S  G  V  P  L  P  P  E  Q  D  T  L  I  N  P  N  Y  Q  L  A  I  A  K  K  Q  T  N  Q  P  E  E  T  E  E  D  E  E  S  A  D  P  N  P  A  P  S  K  N  P  T  L  S  H  E  K  T  D  L  P  Q  G  T  P  Q  R  V  S  F  P  L  G  A  K  R  P  R  *  C  L  M  L  D  Q  L  *  S  Q  E  P  L  *  P  P  A  Y  V  F  N  R  R  H  C  I  L  V  V  *  T  *  S  M  K  L  *  D  P  S  V  T  Q  S  V  L  V  *  M  L  S  F  Q  Y  L  L  D  T  I  S  R  E  L  S  C  K  M  K  N  Y  L  G  I  I  N  S  F  P  T  Y   </first_frame>
            <second_frame>  Q  C  F  L  V  L  R  L  I  F  A  Y  C  S  N  C  G  E  S  S  :  V  E  P  *  K  K  W  L  K  V  E  K  R  T  C  Q  G  M  Q  R  L  S  K  R  C  *  N  Q  W  V  L  M  T  T  S  L  E  L  C  I  N  F  W  N  C  G  I  A  M  L  L  M  Y  *  R  M  L  K  S  T  Q  S  M  Q  G  R  L  P  L  T  L  M  T  S  S  L  P  F  S  Q  K  L  I  S  A  S  H  N  P  R  R  V  R :   S  Y  W  S  W  L  G  T  E  T  R  F  H  C  R  N  Q  L  L  G  L  E  Y  H  S  L  L  N  K  I  H  *  S  T  L  T  I  S  *  L  L  Q  R  S  K  L  T  N  Q  K  K  Q  R  R  T  K  K  A  L  I  P  T  Q  L  Q  A  K  I  Q  L  F  L  M  K  R  Q  T  Y  L  K  V  L  L  N  E  Y  P  F  P  L  A  P  N  V  Q  D  D  V  L  C  L  I  S  F  S  H  K  S  L  C  N  R  L  P  M  Y  L  I  E  G  I  V  Y  L  L  F  E  H  E  V  *  N  F  K  I  L  L  *  H  S  Q  Y  *  F  K  C  S  P  S  S  I  Y  *  T  Q  L  A  E  S  *  A  V  K  *  R  I  T  L  A  L  S  I  V  F  Q  H  I  </second_frame>
            <third_frame>   S  A  F  W  F  F  V  *  S  L  P  I  A  R  I  V  V  N  L  R :   L  N  L  E  R  N  G  *  R  W  R  R  G  L  A  K  G  C  K  D  C  Q  N  A  A  K  I  N  G  C  *  *  L  R  A  S  S  C  A  S  I  F  G  I  V  V  S  L  C  C  *  C  T  D  G  C  S  S  L  L  R  A  C  R  E  G  F  H  *  L  *  *  H  Q  A  C  H  S  V  K  S  *  F  Q  L  L  T  T  P  A  A  *   : G  P  T  G  V  G  *  E  Q  K  Q  D  S  I  A  E  I  N  C  W  V  W  S  T  T  P  S  *  T  R  Y  T  D  Q  P  *  L  S  A  S  Y  C  K  E  A  N  *  P  T  R  R  N  R  G  G  R  R  K  R  *  S  Q  P  S  S  K  Q  K  S  N  S  F  S  *  K  D  R  L  T  S  R  Y  S  S  T  S  I  L  S  P  W  R  Q  T  S  K  M  M  S  Y  A  *  S  A  L  V  T  R  A  F  V  T  A  C  L  C  I  *  S  K  A  L  Y  T  C  C  L  N  M  K  Y  E  T  L  R  S  F  C  N  T  V  S  I  S  L  N  A  L  L  P  V  F  I  R  H  N  *  Q  R  V  E  L  *  N  E  E  L  P  W  H  Y  Q  *  F  S  N  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0036C23.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26971" stop="26699"/>
                    <exon start="22233" stop="21943"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLKEMAEGGEEDLPRDAKIVKTLLKSMGVDDYEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKASIDSDDIKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPKSIAGSGVPLPPEQDTLINPNYQLAIAKKQTNQPEETEEDEESADPNPAPSKNPTLSHEKTDLPQGTPQRVSFPLGAKRPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25640" e_stop="25031"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="25640" e_stop="25031" e_length="610"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25640" stop="25031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735482" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGAGATTGAAGGTCTTCACTCCTGCAACTTTATGACTTAGCACTGCTAGTCTGTCCGCCGGTCTATTAGCTTCTCGAAAATAATGGTTGATATTGAAGTCATGATCTTCAATCATCTTCAGGATCTCTTTTATTTGGTTGTAGATTTTCGAAGGAGGTTTCCACTCTTTTCTGGAGCACTTGGCTAGTATCAGGGAATCTGTTTCACCTATCGCCATATCAAAACCTTTGCCAGCACACCATTTCAGTCCAAAACCATAGCCTCAGCTTCTGCCTTCTGCAATGTTGCTAGTTCCAGCTCCTAAGGATATAATGTAGGCAAAAATGAAGTTCCCCTCTTGATCTCTGATGATTCCCCCTCCTCCACACTGCCCCTCTGCAGCTACCAACGCTATTGAGTGTGACTCTGAAAGAAGGAGGTTTGATCCATGCAACTGGAATACTTGTATTGTATTGGACAACCGCATCACAAGCTTGACAAATACTGCTCTAGTTGTCTCTAATTTTGACTGTTACTCCTGATAACATGCACAATACAATTTGTGATATTAGTACTAGTTCTATAAAGTGAGGGCCTAGTCCCCTCAAATTTGTTGCTACAACTTGAC</gDNA_template>
            <first_frame> R  R  D  *  R  S  S  L  L  Q  L  Y  D  L  A  L  L  V  C  P  P  V  Y  *  L  L  E  N  N  G  *  Y  *  S  H  D  L  Q  S  S  S  G  S  L  L  F  G  C  R  F  S  K  E  V  S  T  L  F  W  S  T  W  L  V  S  G  N  L  F  H  L  S  P  Y  Q  N  L  C  Q  H  T  I  S  V  Q  N  H  S  L  S  F  C  L  L  Q  C  C  *  F  Q  L  L  R  I  *  C  R  Q  K  *  S  S  P  L  D  L  *  *  F  P  L  L  H  T  A  P  L  Q  L  P  T  L  L  S  V  T  L  K  E  G  G  L  I  H  A  T  G  I  L  V  L  Y  W  T  T  A  S  Q  A  *  Q  I  L  L  *  L  S  L  I  L  T  V  T  P  D  N  M  H  N  T  I  C  D  I  S  T  S  S  I  K  *  G  P  S  P  L  K  F  V  A  T  T  *  </first_frame>
            <second_frame>  E  E  I  E  G  L  H  S  C  N  F  M  T  *  H  C  *  S  V  R  R  S  I  S  F  S  K  I  M  V  D  I  E  V  M  I  F  N  H  L  Q  D  L  F  Y  L  V  V  D  F  R  R  R  F  P  L  F  S  G  A  L  G  *  Y  Q  G  I  C  F  T  Y  R  H  I  K  T  F  A  S  T  P  F  Q  S  K  T  I  A  S  A  S  A  F  C  N  V  A  S  S  S  S  *  G  Y  N  V  G  K  N  E  V  P  L  L  I  S  D  D  S  P  S  S  T  L  P  L  C  S  Y  Q  R  Y  *  V  *  L  *  K  K  E  V  *  S  M  Q  L  E  Y  L  Y  C  I  G  Q  P  H  H  K  L  D  K  Y  C  S  S  C  L  *  F  *  L  L  L  L  I  T  C  T  I  Q  F  V  I  L  V  L  V  L  *  S  E  G  L  V  P  S  N  L  L  L  Q  L  D </second_frame>
            <third_frame>   K  R  L  K  V  F  T  P  A  T  L  *  L  S  T  A  S  L  S  A  G  L  L  A  S  R  K  *  W  L  I  L  K  S  *  S  S  I  I  F  R  I  S  F  I  W  L  *  I  F  E  G  G  F  H  S  F  L  E  H  L  A  S  I  R  E  S  V  S  P  I  A  I  S  K  P  L  P  A  H  H  F  S  P  K  P  *  P  Q  L  L  P  S  A  M  L  L  V  P  A  P  K  D  I  M  *  A  K  M  K  F  P  S  *  S  L  M  I  P  P  P  P  H  C  P  S  A  A  T  N  A  I  E  C  D  S  E  R  R  R  F  D  P  C  N  W  N  T  C  I  V  L  D  N  R  I  T  S  L  T  N  T  A  L  V  V  S  N  F  D  C  Y  S  *  *  H  A  Q  Y  N  L  *  Y  *  Y  *  F  Y  K  V  R  A  *  S  P  Q  I  C  C  Y  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0036C23.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25541" stop="25347"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHDLQSSSGSLLFGCRFSKEVSTLFWSTWLVSGNLFHLSPYQNLCQHTISVQNHSLSFCLLQCC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="53850" PGL_stop="39744"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53850" e_stop="53404"/>
            <exon e_start="49584" e_stop="49342"/>
            <exon e_start="49250" e_stop="49145"/>
            <exon e_start="46760" e_stop="46661"/>
            <exon e_start="46263" e_stop="46158"/>
            <exon e_start="45883" e_stop="45793"/>
            <exon e_start="45326" e_stop="45185"/>
            <exon e_start="44318" e_stop="44171"/>
            <exon e_start="44040" e_stop="43931"/>
            <exon e_start="42599" e_stop="42443"/>
            <exon e_start="41361" e_stop="41236"/>
            <exon e_start="41141" e_stop="40978"/>
            <exon e_start="40296" e_stop="39744"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.096" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.360" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.713" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.784" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.458" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="53850" e_stop="53404" e_length="447"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53403" i_stop="49585" i_length="3819"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49584" e_stop="49342" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.979">
            <gDNA_intron_boundary i_start="49341" i_stop="49251" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49250" e_stop="49145" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.823" acc_prob="0.886">
            <gDNA_intron_boundary i_start="49144" i_stop="46761" i_length="2384"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46760" e_stop="46661" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.096">
            <gDNA_intron_boundary i_start="46660" i_stop="46264" i_length="397"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46263" e_stop="46158" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.989">
            <gDNA_intron_boundary i_start="46157" i_stop="45884" i_length="274"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45883" e_stop="45793" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.360" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45792" i_stop="45327" i_length="466"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45326" e_stop="45185" e_length="142"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.713">
            <gDNA_intron_boundary i_start="45184" i_stop="44319" i_length="866"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44318" e_stop="44171" e_length="148"/>
          </exon>
          <intron i_serial="8" don_prob="0.946" acc_prob="0.957">
            <gDNA_intron_boundary i_start="44170" i_stop="44041" i_length="130"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44040" e_stop="43931" e_length="110"/>
          </exon>
          <intron i_serial="9" don_prob="0.784" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43930" i_stop="42600" i_length="1331"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="42599" e_stop="42443" e_length="157"/>
          </exon>
          <intron i_serial="10" don_prob="0.987" acc_prob="0.972">
            <gDNA_intron_boundary i_start="42442" i_stop="41362" i_length="1081"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="41361" e_stop="41236" e_length="126"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="0.978">
            <gDNA_intron_boundary i_start="41235" i_stop="41142" i_length="94"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="41141" e_stop="40978" e_length="164"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.458">
            <gDNA_intron_boundary i_start="40977" i_stop="40297" i_length="681"/>
          </intron>
          <exon e_serial="13" e_score="0.998">
            <gDNA_exon_boundary e_start="40296" e_stop="39744" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53850" stop="53404"/>
              <exon start="49584" stop="49508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53662" stop="53404"/>
              <exon start="49584" stop="49362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53608" stop="53404"/>
              <exon start="49584" stop="49342"/>
              <exon start="49250" stop="49145"/>
              <exon start="46760" stop="46707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53608" stop="53404"/>
              <exon start="49584" stop="49342"/>
              <exon start="49250" stop="49145"/>
              <exon start="46760" stop="46735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53607" stop="53404"/>
              <exon start="49584" stop="49342"/>
              <exon start="49250" stop="49145"/>
              <exon start="46760" stop="46661"/>
              <exon start="46263" stop="46213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53563" stop="53404"/>
              <exon start="49584" stop="49342"/>
              <exon start="49250" stop="49145"/>
              <exon start="46760" stop="46661"/>
              <exon start="46263" stop="46158"/>
              <exon start="45883" stop="45793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53442" stop="53404"/>
              <exon start="49584" stop="49342"/>
              <exon start="49250" stop="49145"/>
              <exon start="46760" stop="46661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53435" stop="53404"/>
              <exon start="49584" stop="49342"/>
              <exon start="49250" stop="49145"/>
              <exon start="46760" stop="46661"/>
              <exon start="46263" stop="46158"/>
              <exon start="45883" stop="45843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49571" stop="49342"/>
              <exon start="49250" stop="49145"/>
              <exon start="46760" stop="46723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49382" stop="49342"/>
              <exon start="49250" stop="49145"/>
              <exon start="46760" stop="46661"/>
              <exon start="46263" stop="46158"/>
              <exon start="45883" stop="45793"/>
              <exon start="45326" stop="45196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49379" stop="49342"/>
              <exon start="49250" stop="49145"/>
              <exon start="46760" stop="46661"/>
              <exon start="46263" stop="46245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46703" stop="46661"/>
              <exon start="46263" stop="46158"/>
              <exon start="45883" stop="45868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46217" stop="46158"/>
              <exon start="45883" stop="45793"/>
              <exon start="45326" stop="45185"/>
              <exon start="44318" stop="44173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45825" stop="45793"/>
              <exon start="45326" stop="45185"/>
              <exon start="44318" stop="44171"/>
              <exon start="44040" stop="44033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45309" stop="45185"/>
              <exon start="44318" stop="44171"/>
              <exon start="44040" stop="43931"/>
              <exon start="42599" stop="42443"/>
              <exon start="41361" stop="41236"/>
              <exon start="41141" stop="40978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44267" stop="44171"/>
              <exon start="44040" stop="43931"/>
              <exon start="42599" stop="42443"/>
              <exon start="41361" stop="41236"/>
              <exon start="41141" stop="41014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42561" stop="42443"/>
              <exon start="41361" stop="41236"/>
              <exon start="41141" stop="40978"/>
              <exon start="40296" stop="39863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40249" stop="39857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40249" stop="39934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40191" stop="39896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40158" stop="39744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215509" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATACTTTGCTTCCAGGGTTTCGTTTTTCTCCTCTGTAAATTCTCTCCTCTCCGATCTCCGTCAATTTTCAATTTCGTGAACTTCCGATTCGCAAAGATCCGGTTACGTTTTTTTGGTTTTTTTTGGTTGTTTGGTGGCGGAACCCTAATTTTATCGGGATTTGGAAGATTTCATGCGATGCGAAGAGGAATTGAGGTTCGTTTAGGTGTTTGAAGATCTTGCGGTTTTGGTTTGGTTCGATTTGATTTGATTTTTGAAAAAAAAAGAAAAAAGAAAAGAGGTATCGCGATTCGCGATGGATGTGGATTTTAATGGTGATGTAGCGAGTTTGGATGCTGAGCTTTTGCAGTTACCTGAGTTGTCTCCTTTGGCTATTAAAACGAATCCTTTTGTTGCCGAGAAGCTATTTGATCAATGGCTTTCGCTTCCTGATACTGCCGCTTTG : GTGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGTGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGCTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTGCAAAAGAACTGATACCACAG : TTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATG : AGTTTAAACCAATTACAAAGGAAATATGCAAGCTGCCCTCGTTCTTCTCCGCTGTCCTTTTTAAGAAGATCGATGTTGACGGCACTGGCGTCATAACCAG : GGATGCCTTTGTTGATTATTGGATACACGGGAACATGTTGACAAAAGATATAGCAACTCAAATGTACACAATCTTGAAGCAGCCGGACCTTAGATACCTCGTGCAG : GATGACTTCAAACCCATTCTTCGGGAACTTTTGGCAACACATCCAGGGTTGGAGTTCTTACAGAGCACACCTGAATTTCAAGAGCGTTATG : CTGAAACTGTAGTATACAGAATATTTTATTACGTAAATCGATCGGGTAATGGCCGTCTTACCCTCAAGGAGCTGAGACGTTCTGACCTTATTGCTGCAATGCAACATGCGGATGAAGAAGATGACATTAACAAGGTCCTAAG : GTACTTCTCGTATGAACATTTTTACGTGATATATTGCAAGTTTTGGGAGCTTGACACCGATCATGATTTTCTCATTGATAAAGAGAACCTCATTCGATATGGCAACCACGCCCTTACGTACAGGATTGTTGATAGAATATTTTCTCAG : GTTCCTAGGAAGTTCACCAGTAAAGTTGAAGGGAAGATGGGCTACGAAGATTTTGTTTACTTTATATTGTCAGAGGAGGATAAATCATCAGAGCCTAGTCTTGAATACTG : GTTCAAATGCATAGATATGGATGGAAATGGGGTTATAACTAGGAATGAGATGCAATTCTTTTATGAGGAGCAGTTGCATAGAATGGAATGCATGGCCCAAGAGCCAGTGCTTTTTGAGGATATTTTGTGTCAAATAGTTGACATGGTCAGTCCAGAG : AATGAAAGCTATTTTACATTACGTGATTTGAAGGGAAGCAGGCTCTCCGGTAGTGTTTTTAACATACTTTTTAACCTCAATAAGTTCATGGCTTTTGAAACCCGCGACCCCTTCCTAATTCGTCAG : GAGCGTGAGAACCCAAATCTGACTGAATGGGATCGCTTCGCTCACAGAGAATATATTAGGCTCTCAATGGAGGAAGATGCAGAGGATGCCTCCAATGGAAGTGCAGATGTCTGGGATGAATCACTTGAGGCTCCCTTCTGAGTTCTAGTCTGTGAGATAGAATG : CCAGGTGTGCCTATTAGCAAATCTTGTTTCAAGCTGGCTATTGAGTTGCAAAGAGTTAGTTTGCACGGAACAGTCAAGTGGGACAAGCTTATCCGTGTGTGTCACCAAGATGTTATTATGAGATAGCCGAGGAGGAAATGTTTGTTTGAACTGCATAGAGTATGCTCTCATGAAGTATAAGGGCATGCTAGTGTTGGAAGCTCCTGACTTGAAACATCAAGGGCTTTGCAAGTGCGCCGATTGGTGATAGATGATTAATGAAAAACTAGATTCCAGTAGTTCATAACTTCGCTCCACGCTTGTTCCCTCTTTAGCTGTACCAAGTCCATATTTCTTATTTATTTGTTCTAGTGCCGATTTTTGGTGGTTGCAAATACAGTTTTTCTTGAAGAGGTTTAGTATGGCTAGTCCCACAGCCCATGTGGATCAGCTTTTTGCTCCTTCTATTATTCTTTTGTGGATTAGACTCTTCTTTTAGTGGCATGTGAATCATGGTAGTTCTGTATTGACTGTGTAATGATATATGGCTTCCCTATTTCTGTCAGCCTTTCTA</gDNA_template>
            <first_frame> Q  Y  F  A  S  R  V  S  F  F  S  S  V  N  S  L  L  S  D  L  R  Q  F  S  I  S  *  T  S  D  S  Q  R  S  G  Y  V  F  L  V  F  F  G  C  L  V  A  E  P  *  F  Y  R  D  L  E  D  F  M  R  C  E  E  E  L  R  F  V  *  V  F  E  D  L  A  V  L  V  W  F  D  L  I  *  F  L  K  K  K  E  K  R  K  E  V  S  R  F  A  M  D  V  D  F  N  G  D  V  A  S  L  D  A  E  L  L  Q  L  P  E  L  S  P  L  A  I  K  T  N  P  F  V  A  E  K  L  F  D  Q  W  L  S  L  P  D  T  A  A  L  :  V  K  S  L  I  K  N  A  K  G  G  G  P  L  N  V  S  T  T  S  S  G  T  N  V  V  A  T  N  S  L  P  S  M  F  P  A  G  S  T  P  P  L  S  P  R  S  S  S  G  S  P  R  I  S  K  H  R  A  G  P  S  S  L  G  S  P  L  K  L  I  N  E  P  A  K  E  L  I  P  Q  :  F  Y  F  Q  N  G  R  P  P  P  N  E  L  K  E  R  C  L  F  R  I  N  Q  F  F  Y  G  H  T  D  G  L  Q  M  N   : E  F  K  P  I  T  K  E  I  C  K  L  P  S  F  F  S  A  V  L  F  K  K  I  D  V  D  G  T  G  V  I  T  R :   D  A  F  V  D  Y  W  I  H  G  N  M  L  T  K  D  I  A  T  Q  M  Y  T  I  L  K  Q  P  D  L  R  Y  L  V  Q  :  D  D  F  K  P  I  L  R  E  L  L  A  T  H  P  G  L  E  F  L  Q  S  T  P  E  F  Q  E  R  Y   : A  E  T  V  V  Y  R  I  F  Y  Y  V  N  R  S  G  N  G  R  L  T  L  K  E  L  R  R  S  D  L  I  A  A  M  Q  H  A  D  E  E  D  D  I  N  K  V  L  R :   Y  F  S  Y  E  H  F  Y  V  I  Y  C  K  F  W  E  L  D  T  D  H  D  F  L  I  D  K  E  N  L  I  R  Y  G  N  H  A  L  T  Y  R  I  V  D  R  I  F  S  Q  :  V  P  R  K  F  T  S  K  V  E  G  K  M  G  Y  E  D  F  V  Y  F  I  L  S  E  E  D  K  S  S  E  P  S  L  E  Y  W :   F  K  C  I  D  M  D  G  N  G  V  I  T  R  N  E  M  Q  F  F  Y  E  E  Q  L  H  R  M  E  C  M  A  Q  E  P  V  L  F  E  D  I  L  C  Q  I  V  D  M  V  S  P  E  :  N  E  S  Y  F  T  L  R  D  L  K  G  S  R  L  S  G  S  V  F  N  I  L  F  N  L  N  K  F  M  A  F  E  T  R  D  P  F  L  I  R  Q  :  E  R  E  N  P  N  L  T  E  W  D  R  F  A  H  R  E  Y  I  R  L  S  M  E  E  D  A  E  D  A  S  N  G  S  A  D  V  W  D  E  S  L  E  A  P  F  *  V  L  V  C  E  I  E  C :   Q  V  C  L  L  A  N  L  V  S  S  W  L  L  S  C  K  E  L  V  C  T  E  Q  S  S  G  T  S  L  S  V  C  V  T  K  M  L  L  *  D  S  R  G  G  N  V  C  L  N  C  I  E  Y  A  L  M  K  Y  K  G  M  L  V  L  E  A  P  D  L  K  H  Q  G  L  C  K  C  A  D  W  *  *  M  I  N  E  K  L  D  S  S  S  S  *  L  R  S  T  L  V  P  S  L  A  V  P  S  P  Y  F  L  F  I  C  S  S  A  D  F  W  W  L  Q  I  Q  F  F  L  K  R  F  S  M  A  S  P  T  A  H  V  D  Q  L  F  A  P  S  I  I  L  L  W  I  R  L  F  F  *  W  H  V  N  H  G  S  S  V  L  T  V  *  *  Y  M  A  S  L  F  L  S  A  F  L </first_frame>
            <second_frame>  N  T  L  L  P  G  F  R  F  S  P  L  *  I  L  S  S  P  I  S  V  N  F  Q  F  R  E  L  P  I  R  K  D  P  V  T  F  F  W  F  F  L  V  V  W  W  R  N  P  N  F  I  G  I  W  K  I  S  C  D  A  K  R  N  *  G  S  F  R  C  L  K  I  L  R  F  W  F  G  S  I  *  F  D  F  *  K  K  K  K  K  E  K  R  Y  R  D  S  R  W  M  W  I  L  M  V  M  *  R  V  W  M  L  S  F  C  S  Y  L  S  C  L  L  W  L  L  K  R  I  L  L  L  P  R  S  Y  L  I  N  G  F  R  F  L  I  L  P  L  W :   *  N  L  *  L  R  M  P  K  V  A  V  H  *  M  C  L  L  H  R  L  G  Q  M  S  W  Q  L  I  L  C  R  P  C  F  L  L  E  V  H  L  H  F  L  Q  E  A  H  L  V  H  L  E  S  Q  S  T  G  L  D  P  L  H  W  G  L  L  *  N  *  L  M  S  L  Q  K  N  *  Y  H  S :   F  T  F  K  M  V  A  P  L  Q  M  N  *  R  N  A  V  C  L  G  *  T  S  S  F  M  V  I  L  M  G  Y  K  *  M  :  S  L  N  Q  L  Q  R  K  Y  A  S  C  P  R  S  S  P  L  S  F  L  R  R  S  M  L  T  A  L  A  S  *  P   : G  M  P  L  L  I  I  G  Y  T  G  T  C  *  Q  K  I  *  Q  L  K  C  T  Q  S  *  S  S  R  T  L  D  T  S  C  R :   M  T  S  N  P  F  F  G  N  F  W  Q  H  I  Q  G  W  S  S  Y  R  A  H  L  N  F  K  S  V  M  :  L  K  L  *  Y  T  E  Y  F  I  T  *  I  D  R  V  M  A  V  L  P  S  R  S  *  D  V  L  T  L  L  L  Q  C  N  M  R  M  K  K  M  T  L  T  R  S  *   : G  T  S  R  M  N  I  F  T  *  Y  I  A  S  F  G  S  L  T  P  I  M  I  F  S  L  I  K  R  T  S  F  D  M  A  T  T  P  L  R  T  G  L  L  I  E  Y  F  L  R :   F  L  G  S  S  P  V  K  L  K  G  R  W  A  T  K  I  L  F  T  L  Y  C  Q  R  R  I  N  H  Q  S  L  V  L  N  T   : G  S  N  A  *  I  W  M  E  M  G  L  *  L  G  M  R  C  N  S  F  M  R  S  S  C  I  E  W  N  A  W  P  K  S  Q  C  F  L  R  I  F  C  V  K  *  L  T  W  S  V  Q  R :   M  K  A  I  L  H  Y  V  I  *  R  E  A  G  S  P  V  V  F  L  T  Y  F  L  T  S  I  S  S  W  L  L  K  P  A  T  P  S  *  F  V  R :   S  V  R  T  Q  I  *  L  N  G  I  A  S  L  T  E  N  I  L  G  S  Q  W  R  K  M  Q  R  M  P  P  M  E  V  Q  M  S  G  M  N  H  L  R  L  P  S  E  F  *  S  V  R  *  N   : A  R  C  A  Y  *  Q  I  L  F  Q  A  G  Y  *  V  A  K  S  *  F  A  R  N  S  Q  V  G  Q  A  Y  P  C  V  S  P  R  C  Y  Y  E  I  A  E  E  E  M  F  V  *  T  A  *  S  M  L  S  *  S  I  R  A  C  *  C  W  K  L  L  T  *  N  I  K  G  F  A  S  A  P  I  G  D  R  *  L  M  K  N  *  I  P  V  V  H  N  F  A  P  R  L  F  P  L  *  L  Y  Q  V  H  I  S  Y  L  F  V  L  V  P  I  F  G  G  C  K  Y  S  F  S  *  R  G  L  V  W  L  V  P  Q  P  M  W  I  S  F  L  L  L  L  L  F  F  C  G  L  D  S  S  F  S  G  M  *  I  M  V  V  L  Y  *  L  C  N  D  I  W  L  P  Y  F  C  Q  P  F   </second_frame>
            <third_frame>   I  L  C  F  Q  G  F  V  F  L  L  C  K  F  S  P  L  R  S  P  S  I  F  N  F  V  N  F  R  F  A  K  I  R  L  R  F  F  G  F  F  W  L  F  G  G  G  T  L  I  L  S  G  F  G  R  F  H  A  M  R  R  G  I  E  V  R  L  G  V  *  R  S  C  G  F  G  L  V  R  F  D  L  I  F  E  K  K  R  K  K  K  R  G  I  A  I  R  D  G  C  G  F  *  W  *  C  S  E  F  G  C  *  A  F  A  V  T  *  V  V  S  F  G  Y  *  N  E  S  F  C  C  R  E  A  I  *  S  M  A  F  A  S  *  Y  C  R  F   : G  E  I  F  D  *  E  C  Q  R  W  R  S  I  E  C  V  Y  Y  I  V  W  D  K  C  R  G  N  *  F  F  A  V  H  V  S  C  W  K  Y  T  S  T  F  S  K  K  L  I  W  F  T  S  N  L  K  A  Q  G  W  T  L  F  I  G  V  S  S  E  I  N  *  *  A  C  K  R  T  D  T  T   : V  L  L  S  K  W  S  P  P  S  K  *  I  E  G  T  L  F  V  *  D  K  P  V  L  L  W  S  Y  *  W  A  T  N  E  * :   V  *  T  N  Y  K  G  N  M  Q  A  A  L  V  L  L  R  C  P  F  *  E  D  R  C  *  R  H  W  R  H  N  Q  :  G  C  L  C  *  L  L  D  T  R  E  H  V  D  K  R  Y  S  N  S  N  V  H  N  L  E  A  A  G  P  *  I  P  R  A   : G  *  L  Q  T  H  S  S  G  T  F  G  N  T  S  R  V  G  V  L  T  E  H  T  *  I  S  R  A  L  C :   *  N  C  S  I  Q  N  I  L  L  R  K  S  I  G  *  W  P  S  Y  P  Q  G  A  E  T  F  *  P  Y  C  C  N  A  T  C  G  *  R  R  *  H  *  Q  G  P  K  :  V  L  L  V  *  T  F  L  R  D  I  L  Q  V  L  G  A  *  H  R  S  *  F  S  H  *  *  R  E  P  H  S  I  W  Q  P  R  P  Y  V  Q  D  C  *  *  N  I  F  S   : G  S  *  E  V  H  Q  *  S  *  R  E  D  G  L  R  R  F  C  L  L  Y  I  V  R  G  G  *  I  I  R  A  *  S  *  I  L  :  V  Q  M  H  R  Y  G  W  K  W  G  Y  N  *  E  *  D  A  I  L  L  *  G  A  V  A  *  N  G  M  H  G  P  R  A  S  A  F  *  G  Y  F  V  S  N  S  *  H  G  Q  S  R   : E  *  K  L  F  Y  I  T  *  F  E  G  K  Q  A  L  R  *  C  F  *  H  T  F  *  P  Q  *  V  H  G  F  *  N  P  R  P  L  P  N  S  S   : G  A  *  E  P  K  S  D  *  M  G  S  L  R  S  Q  R  I  Y  *  A  L  N  G  G  R  C  R  G  C  L  Q  W  K  C  R  C  L  G  *  I  T  *  G  S  L  L  S  S  S  L  *  D  R  M  :  P  G  V  P  I  S  K  S  C  F  K  L  A  I  E  L  Q  R  V  S  L  H  G  T  V  K  W  D  K  L  I  R  V  C  H  Q  D  V  I  M  R  *  P  R  R  K  C  L  F  E  L  H  R  V  C  S  H  E  V  *  G  H  A  S  V  G  S  S  *  L  E  T  S  R  A  L  Q  V  R  R  L  V  I  D  D  *  *  K  T  R  F  Q  *  F  I  T  S  L  H  A  C  S  L  F  S  C  T  K  S  I  F  L  I  Y  L  F  *  C  R  F  L  V  V  A  N  T  V  F  L  E  E  V  *  Y  G  *  S  H  S  P  C  G  S  A  F  C  S  F  Y  Y  S  F  V  D  *  T  L  L  L  V  A  C  E  S  W  *  F  C  I  D  C  V  M  I  Y  G  F  P  I  S  V  S  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0036C23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53598" stop="53404"/>
                    <exon start="49584" stop="49342"/>
                    <exon start="49250" stop="49145"/>
                    <exon start="46760" stop="46661"/>
                    <exon start="46263" stop="46158"/>
                    <exon start="45883" stop="45793"/>
                    <exon start="45326" stop="45185"/>
                    <exon start="44318" stop="44171"/>
                    <exon start="44040" stop="43931"/>
                    <exon start="42599" stop="42443"/>
                    <exon start="41361" stop="41236"/>
                    <exon start="41141" stop="41001"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1662</number_coding_nucleotides>
                  <number_encoded_amino_acids>554</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLKKKEKRKEVSRFAMDVDFNGDVASLDAELLQLPELSPLAIKTNPFVAEKLFDQWLSLPDTAALVKSLIKNAKGGGPLNVSTTSSGTNVVATNSLPSMFPAGSTPPLSPRSSSGSPRISKHRAGPSSLGSPLKLINEPAKELIPQFYFQNGRPPPNELKERCLFRINQFFYGHTDGLQMNEFKPITKEICKLPSFFSAVLFKKIDVDGTGVITRDAFVDYWIHGNMLTKDIATQMYTILKQPDLRYLVQDDFKPILRELLATHPGLEFLQSTPEFQERYAETVVYRIFYYVNRSGNGRLTLKELRRSDLIAAMQHADEEDDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDMDGNGVITRNEMQFFYEEQLHRMECMAQEPVLFEDILCQIVDMVSPENESYFTLRDLKGSRLSGSVFNILFNLNKFMAFETRDPFLIRQERENPNLTEWDRFAHREYIRLSMEEDAEDASNGSADVWDESLEAPF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0036C23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53848" stop="53636"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILCFQGFVFLLCKFSPLRSPSIFNFVNFRFAKIRLRFFGFFWLFGGGTLILSGFGRFHAMRRGIEVRLGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53850" e_stop="53404"/>
            <exon e_start="49584" e_stop="49342"/>
            <exon e_start="49250" e_stop="49145"/>
            <exon e_start="46760" e_stop="46661"/>
            <exon e_start="46263" e_stop="46158"/>
            <exon e_start="45883" e_stop="45793"/>
            <exon e_start="45326" e_stop="45185"/>
            <exon e_start="44318" e_stop="44171"/>
            <exon e_start="44040" e_stop="43931"/>
            <exon e_start="42599" e_stop="42443"/>
            <exon e_start="41361" e_stop="41236"/>
            <exon e_start="41141" e_stop="40812"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.096" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.360" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.713" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.784" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="53850" e_stop="53404" e_length="447"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53403" i_stop="49585" i_length="3819"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49584" e_stop="49342" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.979">
            <gDNA_intron_boundary i_start="49341" i_stop="49251" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49250" e_stop="49145" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.823" acc_prob="0.886">
            <gDNA_intron_boundary i_start="49144" i_stop="46761" i_length="2384"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46760" e_stop="46661" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.096">
            <gDNA_intron_boundary i_start="46660" i_stop="46264" i_length="397"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46263" e_stop="46158" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.989">
            <gDNA_intron_boundary i_start="46157" i_stop="45884" i_length="274"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45883" e_stop="45793" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.360" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45792" i_stop="45327" i_length="466"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45326" e_stop="45185" e_length="142"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.713">
            <gDNA_intron_boundary i_start="45184" i_stop="44319" i_length="866"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44318" e_stop="44171" e_length="148"/>
          </exon>
          <intron i_serial="8" don_prob="0.946" acc_prob="0.957">
            <gDNA_intron_boundary i_start="44170" i_stop="44041" i_length="130"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44040" e_stop="43931" e_length="110"/>
          </exon>
          <intron i_serial="9" don_prob="0.784" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43930" i_stop="42600" i_length="1331"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="42599" e_stop="42443" e_length="157"/>
          </exon>
          <intron i_serial="10" don_prob="0.987" acc_prob="0.972">
            <gDNA_intron_boundary i_start="42442" i_stop="41362" i_length="1081"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="41361" e_stop="41236" e_length="126"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="0.978">
            <gDNA_intron_boundary i_start="41235" i_stop="41142" i_length="94"/>
          </intron>
          <exon e_serial="12" e_score="0.955">
            <gDNA_exon_boundary e_start="41141" e_stop="40812" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53850" stop="53404"/>
              <exon start="49584" stop="49508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53662" stop="53404"/>
              <exon start="49584" stop="49362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53608" stop="53404"/>
              <exon start="49584" stop="49342"/>
              <exon start="49250" stop="49145"/>
              <exon start="46760" stop="46707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53608" stop="53404"/>
              <exon start="49584" stop="49342"/>
              <exon start="49250" stop="49145"/>
              <exon start="46760" stop="46735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53607" stop="53404"/>
              <exon start="49584" stop="49342"/>
              <exon start="49250" stop="49145"/>
              <exon start="46760" stop="46661"/>
              <exon start="46263" stop="46213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53563" stop="53404"/>
              <exon start="49584" stop="49342"/>
              <exon start="49250" stop="49145"/>
              <exon start="46760" stop="46661"/>
              <exon start="46263" stop="46158"/>
              <exon start="45883" stop="45793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53442" stop="53404"/>
              <exon start="49584" stop="49342"/>
              <exon start="49250" stop="49145"/>
              <exon start="46760" stop="46661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53435" stop="53404"/>
              <exon start="49584" stop="49342"/>
              <exon start="49250" stop="49145"/>
              <exon start="46760" stop="46661"/>
              <exon start="46263" stop="46158"/>
              <exon start="45883" stop="45843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49571" stop="49342"/>
              <exon start="49250" stop="49145"/>
              <exon start="46760" stop="46723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49382" stop="49342"/>
              <exon start="49250" stop="49145"/>
              <exon start="46760" stop="46661"/>
              <exon start="46263" stop="46158"/>
              <exon start="45883" stop="45793"/>
              <exon start="45326" stop="45196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49379" stop="49342"/>
              <exon start="49250" stop="49145"/>
              <exon start="46760" stop="46661"/>
              <exon start="46263" stop="46245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46703" stop="46661"/>
              <exon start="46263" stop="46158"/>
              <exon start="45883" stop="45868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46217" stop="46158"/>
              <exon start="45883" stop="45793"/>
              <exon start="45326" stop="45185"/>
              <exon start="44318" stop="44173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45825" stop="45793"/>
              <exon start="45326" stop="45185"/>
              <exon start="44318" stop="44171"/>
              <exon start="44040" stop="44033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45309" stop="45185"/>
              <exon start="44318" stop="44171"/>
              <exon start="44040" stop="43931"/>
              <exon start="42599" stop="42443"/>
              <exon start="41361" stop="41236"/>
              <exon start="41141" stop="40978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44267" stop="44171"/>
              <exon start="44040" stop="43931"/>
              <exon start="42599" stop="42443"/>
              <exon start="41361" stop="41236"/>
              <exon start="41141" stop="41014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42572" stop="42443"/>
              <exon start="41361" stop="41236"/>
              <exon start="41141" stop="40812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376526" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATACTTTGCTTCCAGGGTTTCGTTTTTCTCCTCTGTAAATTCTCTCCTCTCCGATCTCCGTCAATTTTCAATTTCGTGAACTTCCGATTCGCAAAGATCCGGTTACGTTTTTTTGGTTTTTTTTGGTTGTTTGGTGGCGGAACCCTAATTTTATCGGGATTTGGAAGATTTCATGCGATGCGAAGAGGAATTGAGGTTCGTTTAGGTGTTTGAAGATCTTGCGGTTTTGGTTTGGTTCGATTTGATTTGATTTTTGAAAAAAAAAGAAAAAAGAAAAGAGGTATCGCGATTCGCGATGGATGTGGATTTTAATGGTGATGTAGCGAGTTTGGATGCTGAGCTTTTGCAGTTACCTGAGTTGTCTCCTTTGGCTATTAAAACGAATCCTTTTGTTGCCGAGAAGCTATTTGATCAATGGCTTTCGCTTCCTGATACTGCCGCTTTG : GTGAAATCTTTGATTAAGAATGCCAAAGGTGGCGGTCCATTGAATGTGTCTACTACATCGTCTGGGACAAATGTCGTGGCAACTAATTCTTTGCCGTCCATGTTTCCTGCTGGAAGTACACCTCCACTTTCTCCAAGAAGCTCATCTGGTTCACCTCGAATCTCAAAGCACAGGGCTGGACCCTCTTCATTGGGGTCTCCTCTGAAATTAATTAATGAGCCTGCAAAAGAACTGATACCACAG : TTTTACTTTCAAAATGGTCGCCCCCCTCCAAATGAATTGAAGGAACGCTGTTTGTTTAGGATAAACCAGTTCTTTTATGGTCATACTGATGGGCTACAAATGAATG : AGTTTAAACCAATTACAAAGGAAATATGCAAGCTGCCCTCGTTCTTCTCCGCTGTCCTTTTTAAGAAGATCGATGTTGACGGCACTGGCGTCATAACCAG : GGATGCCTTTGTTGATTATTGGATACACGGGAACATGTTGACAAAAGATATAGCAACTCAAATGTACACAATCTTGAAGCAGCCGGACCTTAGATACCTCGTGCAG : GATGACTTCAAACCCATTCTTCGGGAACTTTTGGCAACACATCCAGGGTTGGAGTTCTTACAGAGCACACCTGAATTTCAAGAGCGTTATG : CTGAAACTGTAGTATACAGAATATTTTATTACGTAAATCGATCGGGTAATGGCCGTCTTACCCTCAAGGAGCTGAGACGTTCTGACCTTATTGCTGCAATGCAACATGCGGATGAAGAAGATGACATTAACAAGGTCCTAAG : GTACTTCTCGTATGAACATTTTTACGTGATATATTGCAAGTTTTGGGAGCTTGACACCGATCATGATTTTCTCATTGATAAAGAGAACCTCATTCGATATGGCAACCACGCCCTTACGTACAGGATTGTTGATAGAATATTTTCTCAG : GTTCCTAGGAAGTTCACCAGTAAAGTTGAAGGGAAGATGGGCTACGAAGATTTTGTTTACTTTATATTGTCAGAGGAGGATAAATCATCAGAGCCTAGTCTTGAATACTG : GTTCAAATGCATAGATATGGATGGAAATGGGGTTATAACTAGGAATGAGATGCAATTCTTTTATGAGGAGCAGTTGCATAGAATGGAATGCATGGCCCAAGAGCCAGTGCTTTTTGAGGATATTTTGTGTCAAATAGTTGACATGGTCAGTCCAGAG : AATGAAAGCTATTTTACATTACGTGATTTGAAGGGAAGCAGGCTCTCCGGTAGTGTTTTTAACATACTTTTTAACCTCAATAAGTTCATGGCTTTTGAAACCCGCGACCCCTTCCTAATTCGTCAG : GAGCGTGAGAACCCAAATCTGACTGAATGGGATCGCTTCGCTCACAGAGAATATATTAGGCTCTCAATGGAGGAAGATGCAGAGGATGCCTCCAATGGAAGTGCAGATGTCTGGGATGAATCACTTGAGGCTCCCTTCTGAGTTCTAGTCTGTGAGATAGAATGGTATGGAGAATGCAGTTACTTAGAATAACCTAAGGCTGCATCTACATACATCGATAGTTCTGCCACCCATTATTTTTTCTCATGCCATGTCTCCATCTCTGATCATGCTGTAAAACACTTTGTTCACCGTTGATGCATATTTATTTATGTGGAAGAAAGTCTTATA</gDNA_template>
            <first_frame> Q  Y  F  A  S  R  V  S  F  F  S  S  V  N  S  L  L  S  D  L  R  Q  F  S  I  S  *  T  S  D  S  Q  R  S  G  Y  V  F  L  V  F  F  G  C  L  V  A  E  P  *  F  Y  R  D  L  E  D  F  M  R  C  E  E  E  L  R  F  V  *  V  F  E  D  L  A  V  L  V  W  F  D  L  I  *  F  L  K  K  K  E  K  R  K  E  V  S  R  F  A  M  D  V  D  F  N  G  D  V  A  S  L  D  A  E  L  L  Q  L  P  E  L  S  P  L  A  I  K  T  N  P  F  V  A  E  K  L  F  D  Q  W  L  S  L  P  D  T  A  A  L  :  V  K  S  L  I  K  N  A  K  G  G  G  P  L  N  V  S  T  T  S  S  G  T  N  V  V  A  T  N  S  L  P  S  M  F  P  A  G  S  T  P  P  L  S  P  R  S  S  S  G  S  P  R  I  S  K  H  R  A  G  P  S  S  L  G  S  P  L  K  L  I  N  E  P  A  K  E  L  I  P  Q  :  F  Y  F  Q  N  G  R  P  P  P  N  E  L  K  E  R  C  L  F  R  I  N  Q  F  F  Y  G  H  T  D  G  L  Q  M  N   : E  F  K  P  I  T  K  E  I  C  K  L  P  S  F  F  S  A  V  L  F  K  K  I  D  V  D  G  T  G  V  I  T  R :   D  A  F  V  D  Y  W  I  H  G  N  M  L  T  K  D  I  A  T  Q  M  Y  T  I  L  K  Q  P  D  L  R  Y  L  V  Q  :  D  D  F  K  P  I  L  R  E  L  L  A  T  H  P  G  L  E  F  L  Q  S  T  P  E  F  Q  E  R  Y   : A  E  T  V  V  Y  R  I  F  Y  Y  V  N  R  S  G  N  G  R  L  T  L  K  E  L  R  R  S  D  L  I  A  A  M  Q  H  A  D  E  E  D  D  I  N  K  V  L  R :   Y  F  S  Y  E  H  F  Y  V  I  Y  C  K  F  W  E  L  D  T  D  H  D  F  L  I  D  K  E  N  L  I  R  Y  G  N  H  A  L  T  Y  R  I  V  D  R  I  F  S  Q  :  V  P  R  K  F  T  S  K  V  E  G  K  M  G  Y  E  D  F  V  Y  F  I  L  S  E  E  D  K  S  S  E  P  S  L  E  Y  W :   F  K  C  I  D  M  D  G  N  G  V  I  T  R  N  E  M  Q  F  F  Y  E  E  Q  L  H  R  M  E  C  M  A  Q  E  P  V  L  F  E  D  I  L  C  Q  I  V  D  M  V  S  P  E  :  N  E  S  Y  F  T  L  R  D  L  K  G  S  R  L  S  G  S  V  F  N  I  L  F  N  L  N  K  F  M  A  F  E  T  R  D  P  F  L  I  R  Q  :  E  R  E  N  P  N  L  T  E  W  D  R  F  A  H  R  E  Y  I  R  L  S  M  E  E  D  A  E  D  A  S  N  G  S  A  D  V  W  D  E  S  L  E  A  P  F  *  V  L  V  C  E  I  E  W  Y  G  E  C  S  Y  L  E  *  P  K  A  A  S  T  Y  I  D  S  S  A  T  H  Y  F  F  S  C  H  V  S  I  S  D  H  A  V  K  H  F  V  H  R  *  C  I  F  I  Y  V  E  E  S  L  I </first_frame>
            <second_frame>  N  T  L  L  P  G  F  R  F  S  P  L  *  I  L  S  S  P  I  S  V  N  F  Q  F  R  E  L  P  I  R  K  D  P  V  T  F  F  W  F  F  L  V  V  W  W  R  N  P  N  F  I  G  I  W  K  I  S  C  D  A  K  R  N  *  G  S  F  R  C  L  K  I  L  R  F  W  F  G  S  I  *  F  D  F  *  K  K  K  K  K  E  K  R  Y  R  D  S  R  W  M  W  I  L  M  V  M  *  R  V  W  M  L  S  F  C  S  Y  L  S  C  L  L  W  L  L  K  R  I  L  L  L  P  R  S  Y  L  I  N  G  F  R  F  L  I  L  P  L  W :   *  N  L  *  L  R  M  P  K  V  A  V  H  *  M  C  L  L  H  R  L  G  Q  M  S  W  Q  L  I  L  C  R  P  C  F  L  L  E  V  H  L  H  F  L  Q  E  A  H  L  V  H  L  E  S  Q  S  T  G  L  D  P  L  H  W  G  L  L  *  N  *  L  M  S  L  Q  K  N  *  Y  H  S :   F  T  F  K  M  V  A  P  L  Q  M  N  *  R  N  A  V  C  L  G  *  T  S  S  F  M  V  I  L  M  G  Y  K  *  M  :  S  L  N  Q  L  Q  R  K  Y  A  S  C  P  R  S  S  P  L  S  F  L  R  R  S  M  L  T  A  L  A  S  *  P   : G  M  P  L  L  I  I  G  Y  T  G  T  C  *  Q  K  I  *  Q  L  K  C  T  Q  S  *  S  S  R  T  L  D  T  S  C  R :   M  T  S  N  P  F  F  G  N  F  W  Q  H  I  Q  G  W  S  S  Y  R  A  H  L  N  F  K  S  V  M  :  L  K  L  *  Y  T  E  Y  F  I  T  *  I  D  R  V  M  A  V  L  P  S  R  S  *  D  V  L  T  L  L  L  Q  C  N  M  R  M  K  K  M  T  L  T  R  S  *   : G  T  S  R  M  N  I  F  T  *  Y  I  A  S  F  G  S  L  T  P  I  M  I  F  S  L  I  K  R  T  S  F  D  M  A  T  T  P  L  R  T  G  L  L  I  E  Y  F  L  R :   F  L  G  S  S  P  V  K  L  K  G  R  W  A  T  K  I  L  F  T  L  Y  C  Q  R  R  I  N  H  Q  S  L  V  L  N  T   : G  S  N  A  *  I  W  M  E  M  G  L  *  L  G  M  R  C  N  S  F  M  R  S  S  C  I  E  W  N  A  W  P  K  S  Q  C  F  L  R  I  F  C  V  K  *  L  T  W  S  V  Q  R :   M  K  A  I  L  H  Y  V  I  *  R  E  A  G  S  P  V  V  F  L  T  Y  F  L  T  S  I  S  S  W  L  L  K  P  A  T  P  S  *  F  V  R :   S  V  R  T  Q  I  *  L  N  G  I  A  S  L  T  E  N  I  L  G  S  Q  W  R  K  M  Q  R  M  P  P  M  E  V  Q  M  S  G  M  N  H  L  R  L  P  S  E  F  *  S  V  R  *  N  G  M  E  N  A  V  T  *  N  N  L  R  L  H  L  H  T  S  I  V  L  P  P  I  I  F  S  H  A  M  S  P  S  L  I  M  L  *  N  T  L  F  T  V  D  A  Y  L  F  M  W  K  K  V  L   </second_frame>
            <third_frame>   I  L  C  F  Q  G  F  V  F  L  L  C  K  F  S  P  L  R  S  P  S  I  F  N  F  V  N  F  R  F  A  K  I  R  L  R  F  F  G  F  F  W  L  F  G  G  G  T  L  I  L  S  G  F  G  R  F  H  A  M  R  R  G  I  E  V  R  L  G  V  *  R  S  C  G  F  G  L  V  R  F  D  L  I  F  E  K  K  R  K  K  K  R  G  I  A  I  R  D  G  C  G  F  *  W  *  C  S  E  F  G  C  *  A  F  A  V  T  *  V  V  S  F  G  Y  *  N  E  S  F  C  C  R  E  A  I  *  S  M  A  F  A  S  *  Y  C  R  F   : G  E  I  F  D  *  E  C  Q  R  W  R  S  I  E  C  V  Y  Y  I  V  W  D  K  C  R  G  N  *  F  F  A  V  H  V  S  C  W  K  Y  T  S  T  F  S  K  K  L  I  W  F  T  S  N  L  K  A  Q  G  W  T  L  F  I  G  V  S  S  E  I  N  *  *  A  C  K  R  T  D  T  T   : V  L  L  S  K  W  S  P  P  S  K  *  I  E  G  T  L  F  V  *  D  K  P  V  L  L  W  S  Y  *  W  A  T  N  E  * :   V  *  T  N  Y  K  G  N  M  Q  A  A  L  V  L  L  R  C  P  F  *  E  D  R  C  *  R  H  W  R  H  N  Q  :  G  C  L  C  *  L  L  D  T  R  E  H  V  D  K  R  Y  S  N  S  N  V  H  N  L  E  A  A  G  P  *  I  P  R  A   : G  *  L  Q  T  H  S  S  G  T  F  G  N  T  S  R  V  G  V  L  T  E  H  T  *  I  S  R  A  L  C :   *  N  C  S  I  Q  N  I  L  L  R  K  S  I  G  *  W  P  S  Y  P  Q  G  A  E  T  F  *  P  Y  C  C  N  A  T  C  G  *  R  R  *  H  *  Q  G  P  K  :  V  L  L  V  *  T  F  L  R  D  I  L  Q  V  L  G  A  *  H  R  S  *  F  S  H  *  *  R  E  P  H  S  I  W  Q  P  R  P  Y  V  Q  D  C  *  *  N  I  F  S   : G  S  *  E  V  H  Q  *  S  *  R  E  D  G  L  R  R  F  C  L  L  Y  I  V  R  G  G  *  I  I  R  A  *  S  *  I  L  :  V  Q  M  H  R  Y  G  W  K  W  G  Y  N  *  E  *  D  A  I  L  L  *  G  A  V  A  *  N  G  M  H  G  P  R  A  S  A  F  *  G  Y  F  V  S  N  S  *  H  G  Q  S  R   : E  *  K  L  F  Y  I  T  *  F  E  G  K  Q  A  L  R  *  C  F  *  H  T  F  *  P  Q  *  V  H  G  F  *  N  P  R  P  L  P  N  S  S   : G  A  *  E  P  K  S  D  *  M  G  S  L  R  S  Q  R  I  Y  *  A  L  N  G  G  R  C  R  G  C  L  Q  W  K  C  R  C  L  G  *  I  T  *  G  S  L  L  S  S  S  L  *  D  R  M  V  W  R  M  Q  L  L  R  I  T  *  G  C  I  Y  I  H  R  *  F  C  H  P  L  F  F  L  M  P  C  L  H  L  *  S  C  C  K  T  L  C  S  P  L  M  H  I  Y  L  C  G  R  K  S  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0036C23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53598" stop="53404"/>
                    <exon start="49584" stop="49342"/>
                    <exon start="49250" stop="49145"/>
                    <exon start="46760" stop="46661"/>
                    <exon start="46263" stop="46158"/>
                    <exon start="45883" stop="45793"/>
                    <exon start="45326" stop="45185"/>
                    <exon start="44318" stop="44171"/>
                    <exon start="44040" stop="43931"/>
                    <exon start="42599" stop="42443"/>
                    <exon start="41361" stop="41236"/>
                    <exon start="41141" stop="41001"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1662</number_coding_nucleotides>
                  <number_encoded_amino_acids>554</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLKKKEKRKEVSRFAMDVDFNGDVASLDAELLQLPELSPLAIKTNPFVAEKLFDQWLSLPDTAALVKSLIKNAKGGGPLNVSTTSSGTNVVATNSLPSMFPAGSTPPLSPRSSSGSPRISKHRAGPSSLGSPLKLINEPAKELIPQFYFQNGRPPPNELKERCLFRINQFFYGHTDGLQMNEFKPITKEICKLPSFFSAVLFKKIDVDGTGVITRDAFVDYWIHGNMLTKDIATQMYTILKQPDLRYLVQDDFKPILRELLATHPGLEFLQSTPEFQERYAETVVYRIFYYVNRSGNGRLTLKELRRSDLIAAMQHADEEDDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDMDGNGVITRNEMQFFYEEQLHRMECMAQEPVLFEDILCQIVDMVSPENESYFTLRDLKGSRLSGSVFNILFNLNKFMAFETRDPFLIRQERENPNLTEWDRFAHREYIRLSMEEDAEDASNGSADVWDESLEAPF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0036C23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53848" stop="53636"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILCFQGFVFLLCKFSPLRSPSIFNFVNFRFAKIRLRFFGFFWLFGGGTLILSGFGRFHAMRRGIEVRLGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="58269" PGL_stop="58967"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58269" e_stop="58967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="58269" e_stop="58967" e_length="699"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58269" stop="58967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340022" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAACCAAAGGTACTTTTTTTTTCTTTCTTAATTCAATTTAAATATGATTTGTCTCGAATGTTTATGTAGCCGACTCTAACTTTTTTGAGATCGAGGCTTAGTTGTATTAAGGGGGTTTGGAAAGTCTTGTATTAACTAACTCTAAACTTGTTTGGGATCGAGGCGTGATTTTTTGTTATTGTGATTTCGTGTTTGAGAGACTCTCACTGATACGACTAGACTAAATGACGAGGATTATTCTTCCTCATCAATGTCCCTTTTTCTCCAATAATTTGAAGCCAAAAAGTGAATCTTCAAAGCATAATTTTGTTGTAAGATGTAGTATTAGCAATGAGGAGAGTAGAGTAAATATTAGAAATCCTCAAAGGGTGAAAATTTCTAGTGAAAATAGAGGTTCACATGATATGAAAGTGTTAAATTGGTCATGTAAAGTAGGCAAATATGATGAAACATTGTATTTACTTGAATGTAAGGTGAAGAGTGGTTATAAACCTGATGTGATTCTGTGTACAAAGCTGATTAAGGGGTTTTTCAACTCGAAAAATTCGGATAAAGGGGTGAAAGTAATGCAAATTCTGGAGCAGTTTGGTGAACCAGATGTGTTTGCATATAATGCACTTGTAAGTGGATTTTGCAAAATGAACAAGATTGAAGAAGCTAATAAGGTGTTGAATAGGATGAAAACTCATGGATTTCC</gDNA_template>
            <first_frame> K  N  Q  R  Y  F  F  F  L  S  *  F  N  L  N  M  I  C  L  E  C  L  C  S  R  L  *  L  F  *  D  R  G  L  V  V  L  R  G  F  G  K  S  C  I  N  *  L  *  T  C  L  G  S  R  R  D  F  L  L  L  *  F  R  V  *  E  T  L  T  D  T  T  R  L  N  D  E  D  Y  S  S  S  S  M  S  L  F  L  Q  *  F  E  A  K  K  *  I  F  K  A  *  F  C  C  K  M  *  Y  *  Q  *  G  E  *  S  K  Y  *  K  S  S  K  G  E  N  F  *  *  K  *  R  F  T  *  Y  E  S  V  K  L  V  M  *  S  R  Q  I  *  *  N  I  V  F  T  *  M  *  G  E  E  W  L  *  T  *  C  D  S  V  Y  K  A  D  *  G  V  F  Q  L  E  K  F  G  *  R  G  E  S  N  A  N  S  G  A  V  W  *  T  R  C  V  C  I  *  C  T  C  K  W  I  L  Q  N  E  Q  D  *  R  S  *  *  G  V  E  *  D  E  N  S  W  I  S </first_frame>
            <second_frame>  R  T  K  G  T  F  F  F  F  L  N  S  I  *  I  *  F  V  S  N  V  Y  V  A  D  S  N  F  F  E  I  E  A  *  L  Y  *  G  G  L  E  S  L  V  L  T  N  S  K  L  V  W  D  R  G  V  I  F  C  Y  C  D  F  V  F  E  R  L  S  L  I  R  L  D  *  M  T  R  I  I  L  P  H  Q  C  P  F  F  S  N  N  L  K  P  K  S  E  S  S  K  H  N  F  V  V  R  C  S  I  S  N  E  E  S  R  V  N  I  R  N  P  Q  R  V  K  I  S  S  E  N  R  G  S  H  D  M  K  V  L  N  W  S  C  K  V  G  K  Y  D  E  T  L  Y  L  L  E  C  K  V  K  S  G  Y  K  P  D  V  I  L  C  T  K  L  I  K  G  F  F  N  S  K  N  S  D  K  G  V  K  V  M  Q  I  L  E  Q  F  G  E  P  D  V  F  A  Y  N  A  L  V  S  G  F  C  K  M  N  K  I  E  E  A  N  K  V  L  N  R  M  K  T  H  G  F   </second_frame>
            <third_frame>   E  P  K  V  L  F  F  S  F  L  I  Q  F  K  Y  D  L  S  R  M  F  M  *  P  T  L  T  F  L  R  S  R  L  S  C  I  K  G  V  W  K  V  L  Y  *  L  T  L  N  L  F  G  I  E  A  *  F  F  V  I  V  I  S  C  L  R  D  S  H  *  Y  D  *  T  K  *  R  G  L  F  F  L  I  N  V  P  F  S  P  I  I  *  S  Q  K  V  N  L  Q  S  I  I  L  L  *  D  V  V  L  A  M  R  R  V  E  *  I  L  E  I  L  K  G  *  K  F  L  V  K  I  E  V  H  M  I  *  K  C  *  I  G  H  V  K  *  A  N  M  M  K  H  C  I  Y  L  N  V  R  *  R  V  V  I  N  L  M  *  F  C  V  Q  S  *  L  R  G  F  S  T  R  K  I  R  I  K  G  *  K  *  C  K  F  W  S  S  L  V  N  Q  M  C  L  H  I  M  H  L  *  V  D  F  A  K  *  T  R  L  K  K  L  I  R  C  *  I  G  *  K  L  M  D  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0036C23.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58495" stop="58965"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTRIILPHQCPFFSNNLKPKSESSKHNFVVRCSISNEESRVNIRNPQRVKISSENRGSHDMKVLNWSCKVGKYDETLYLLECKVKSGYKPDVILCTKLIKGFFNSKNSDKGVKVMQILEQFGEPDVFAYNALVSGFCKMNKIEEANKVLNRMKTHGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="85108" PGL_stop="80518"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85108" e_stop="84839"/>
            <exon e_start="84264" e_stop="84087"/>
            <exon e_start="83387" e_stop="83290"/>
            <exon e_start="81476" e_stop="81380"/>
            <exon e_start="80905" e_stop="80820"/>
            <exon e_start="80709" e_stop="80518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="0.987" acc_prob="0.409" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="85108" e_stop="84839" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="84838" i_stop="84265" i_length="574"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84264" e_stop="84087" e_length="178"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.409">
            <gDNA_intron_boundary i_start="84086" i_stop="83388" i_length="699"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83387" e_stop="83290" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.982">
            <gDNA_intron_boundary i_start="83289" i_stop="81477" i_length="1813"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81476" e_stop="81380" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="81379" i_stop="80906" i_length="474"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80905" e_stop="80820" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="80819" i_stop="80710" i_length="110"/>
          </intron>
          <exon e_serial="6" e_score="0.953">
            <gDNA_exon_boundary e_start="80709" e_stop="80518" e_length="192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85108" stop="84839"/>
              <exon start="84264" stop="84087"/>
              <exon start="83387" stop="83290"/>
              <exon start="81476" stop="81380"/>
              <exon start="80905" stop="80820"/>
              <exon start="80709" stop="80518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85082" stop="84839"/>
              <exon start="84264" stop="84087"/>
              <exon start="83387" stop="83290"/>
              <exon start="81476" stop="81380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724181" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCAAATCCCTAATTTAGCGATCGGAAAATCTCAATTCACCGGCGTTACGATGTCATCGATGCCTTCAACGTCGGCGGCAGCTACTTCATCGTCGTCGCAATTCACCTACTCGAACGGCACCTACTTTCCGACGCCTTTTCATCTCCAACAACAACCTCCTCAGCCCTACATAGGTGCTGCTCCTCCGCCCGTTCAACTTCCTGTTCCTTCCGTCTATCCTGCTCCTGCTGCTATTCCTGGCGTTTACACTTTGCCTCAGTTTCAACAA : GCTCAACAGTTGTTCCAAAGAGACGCACAAACAATCACACCTGAAGCACTTGAAAATGTGAAAGCTGCACTTGCGAGCAGTGAAATTGAGCACAAAGCTGAGGCCAAGAAGAAAGCTGTACCGCGTAAGGCAGCAGGACATAGTTGGGAAGATCCTACTCTGGCAGAGTGGCCCGAAA : ATGATTATCGTCTATTCTGTGGTGATCTCGGGAATGAGGTGAATGATGATGTCCTATCAAAAGCTTTTTCAAGGTTTCCAACTTTTAATATGGCCAAG : GTTGTAAGAGACAAGCGGACTGGTAAGACCAGGGGATATGGATTTGTGAGTTTTTCCAATCCATTGGATCTTGCTGCGGCACTTAAAGAAATGAATG : GAAAGTATGTTGGTAACCGGCCTATTAAACTTCGCAAGAGTAAGTGGCAAGAGAGAATTGACTATGAGGCTGTGGAAAGTCACAAG : AACCGATCACATAAGAAACCAAAGCAAGCAAAGAAGGGTATATTTCACAAGTGAGCATAGCATACATCAACCATGATAAGGACTCAAGCAGCAAGATACTTGAAATGTGTATTAATCAATTTCTTTACCAGTCCTTGCCTGGGAAAGAAGGATCAAAGTATAGTCCAAGGATGCATCTATGTCTGCAATTTG</gDNA_template>
            <first_frame> S  Q  I  P  N  L  A  I  G  K  S  Q  F  T  G  V  T  M  S  S  M  P  S  T  S  A  A  A  T  S  S  S  S  Q  F  T  Y  S  N  G  T  Y  F  P  T  P  F  H  L  Q  Q  Q  P  P  Q  P  Y  I  G  A  A  P  P  P  V  Q  L  P  V  P  S  V  Y  P  A  P  A  A  I  P  G  V  Y  T  L  P  Q  F  Q  Q  :  A  Q  Q  L  F  Q  R  D  A  Q  T  I  T  P  E  A  L  E  N  V  K  A  A  L  A  S  S  E  I  E  H  K  A  E  A  K  K  K  A  V  P  R  K  A  A  G  H  S  W  E  D  P  T  L  A  E  W  P  E   : N  D  Y  R  L  F  C  G  D  L  G  N  E  V  N  D  D  V  L  S  K  A  F  S  R  F  P  T  F  N  M  A  K  :  V  V  R  D  K  R  T  G  K  T  R  G  Y  G  F  V  S  F  S  N  P  L  D  L  A  A  A  L  K  E  M  N   : G  K  Y  V  G  N  R  P  I  K  L  R  K  S  K  W  Q  E  R  I  D  Y  E  A  V  E  S  H  K  :  N  R  S  H  K  K  P  K  Q  A  K  K  G  I  F  H  K  *  A  *  H  T  S  T  M  I  R  T  Q  A  A  R  Y  L  K  C  V  L  I  N  F  F  T  S  P  C  L  G  K  K  D  Q  S  I  V  Q  G  C  I  Y  V  C  N  L </first_frame>
            <second_frame>  P  K  S  L  I  *  R  S  E  N  L  N  S  P  A  L  R  C  H  R  C  L  Q  R  R  R  Q  L  L  H  R  R  R  N  S  P  T  R  T  A  P  T  F  R  R  L  F  I  S  N  N  N  L  L  S  P  T  *  V  L  L  L  R  P  F  N  F  L  F  L  P  S  I  L  L  L  L  L  F  L  A  F  T  L  C  L  S  F  N  K :   L  N  S  C  S  K  E  T  H  K  Q  S  H  L  K  H  L  K  M  *  K  L  H  L  R  A  V  K  L  S  T  K  L  R  P  R  R  K  L  Y  R  V  R  Q  Q  D  I  V  G  K  I  L  L  W  Q  S  G  P  K  :  M  I  I  V  Y  S  V  V  I  S  G  M  R  *  M  M  M  S  Y  Q  K  L  F  Q  G  F  Q  L  L  I  W  P  R :   L  *  E  T  S  G  L  V  R  P  G  D  M  D  L  *  V  F  P  I  H  W  I  L  L  R  H  L  K  K  *  M  :  E  S  M  L  V  T  G  L  L  N  F  A  R  V  S  G  K  R  E  L  T  M  R  L  W  K  V  T  R :   T  D  H  I  R  N  Q  S  K  Q  R  R  V  Y  F  T  S  E  H  S  I  H  Q  P  *  *  G  L  K  Q  Q  D  T  *  N  V  Y  *  S  I  S  L  P  V  L  A  W  E  R  R  I  K  V  *  S  K  D  A  S  M  S  A  I   </second_frame>
            <third_frame>   P  N  P  *  F  S  D  R  K  I  S  I  H  R  R  Y  D  V  I  D  A  F  N  V  G  G  S  Y  F  I  V  V  A  I  H  L  L  E  R  H  L  L  S  D  A  F  S  S  P  T  T  T  S  S  A  L  H  R  C  C  S  S  A  R  S  T  S  C  S  F  R  L  S  C  S  C  C  Y  S  W  R  L  H  F  A  S  V  S  T   : S  S  T  V  V  P  K  R  R  T  N  N  H  T  *  S  T  *  K  C  E  S  C  T  C  E  Q  *  N  *  A  Q  S  *  G  Q  E  E  S  C  T  A  *  G  S  R  T  *  L  G  R  S  Y  S  G  R  V  A  R  K :   *  L  S  S  I  L  W  *  S  R  E  *  G  E  *  *  C  P  I  K  S  F  F  K  V  S  N  F  *  Y  G  Q   : G  C  K  R  Q  A  D  W  *  D  Q  G  I  W  I  C  E  F  F  Q  S  I  G  S  C  C  G  T  *  R  N  E  W :   K  V  C  W  *  P  A  Y  *  T  S  Q  E  *  V  A  R  E  N  *  L  *  G  C  G  K  S  Q   : E  P  I  T  *  E  T  K  A  S  K  E  G  Y  I  S  Q  V  S  I  A  Y  I  N  H  D  K  D  S  S  S  K  I  L  E  M  C  I  N  Q  F  L  Y  Q  S  L  P  G  K  E  G  S  K  Y  S  P  R  M  H  L  C  L  Q  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0036C23.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85108" stop="84839"/>
                    <exon start="84264" stop="84087"/>
                    <exon start="83387" stop="83290"/>
                    <exon start="81476" stop="81380"/>
                    <exon start="80905" stop="80820"/>
                    <exon start="80709" stop="80656"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQIPNLAIGKSQFTGVTMSSMPSTSAAATSSSSQFTYSNGTYFPTPFHLQQQPPQPYIGAAPPPVQLPVPSVYPAPAAIPGVYTLPQFQQAQQLFQRDAQTITPEALENVKAALASSEIEHKAEAKKKAVPRKAAGHSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPTFNMAKVVRDKRTGKTRGYGFVSFSNPLDLAAALKEMNGKYVGNRPIKLRKSKWQERIDYEAVESHKNRSHKKPKQAKKGIFHK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="102341" PGL_stop="97098"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102341" e_stop="102040"/>
            <exon e_start="101210" e_stop="101033"/>
            <exon e_start="100407" e_stop="100310"/>
            <exon e_start="98430" e_stop="98334"/>
            <exon e_start="97864" e_stop="97779"/>
            <exon e_start="97672" e_stop="97098"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.273" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102341" e_stop="102040" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="102039" i_stop="101211" i_length="829"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101210" e_stop="101033" e_length="178"/>
          </exon>
          <intron i_serial="2" don_prob="0.943" acc_prob="0.273">
            <gDNA_intron_boundary i_start="101032" i_stop="100408" i_length="625"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100407" e_stop="100310" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.950">
            <gDNA_intron_boundary i_start="100309" i_stop="98431" i_length="1879"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98430" e_stop="98334" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="98333" i_stop="97865" i_length="469"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97864" e_stop="97779" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="97778" i_stop="97673" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="97672" e_stop="97098" e_length="575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102341" stop="102040"/>
              <exon start="101210" stop="101033"/>
              <exon start="100407" stop="100345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102332" stop="102040"/>
              <exon start="101210" stop="101033"/>
              <exon start="100407" stop="100310"/>
              <exon start="98430" stop="98334"/>
              <exon start="97864" stop="97779"/>
              <exon start="97672" stop="97260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102330" stop="102040"/>
              <exon start="101210" stop="101033"/>
              <exon start="100407" stop="100340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102115" stop="102040"/>
              <exon start="101210" stop="101033"/>
              <exon start="100407" stop="100310"/>
              <exon start="98430" stop="98334"/>
              <exon start="97864" stop="97830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98390" stop="98334"/>
              <exon start="97864" stop="97779"/>
              <exon start="97672" stop="97101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97852" stop="97779"/>
              <exon start="97672" stop="97098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97852" stop="97779"/>
              <exon start="97672" stop="97099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97852" stop="97779"/>
              <exon start="97672" stop="97137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97852" stop="97779"/>
              <exon start="97672" stop="97137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97851" stop="97779"/>
              <exon start="97672" stop="97098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228143" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCGTTTTTCCGAATTTTTCAATCACAAGAATTCTCAAATCCCTAATTTAGCGATCGTAAAATCTCAATTCACCGGCGTTACGATGTCATCGATGCCTTCAACGTCGGCGGCAGCTACTTCATCGTCGTCGCAATTCACCTACTCGAATGGCACCTACTTTCCGACGCCTTTTCATCTCCAACAACATCCTCCTCAGCCCTACATAGGTGCTGCTCCTCCGCCCGTTCAACTTCCTGTTCCTTCCGTCTATCCTGCTCCTGCTGTTATTCCTGGCGTTTACACTTTGCCTCAGTTTCAACAA : GCTCAACAGTTATTCCAAAGAGACGCACAAACAATTACACCTGAAGCACTTGAAAATGTGAAAGCTGCACTTGCGAGCTGTGAAATTGAGCACAAAGCTGAGGCCAAGAAGAAAGCTGTACCGCGTAAGGCAGCAGGACATAGTTGGGAAGATCCTACTCTGGCAGAGTGGCCCGAGA : ATGATTATCGTCTATTCTGTGGTGATCTGGGGAATGAGGTGAATGATGATGTCCTATCAAAAGCCTTTTCAAGGTTTCCAACTTTTAATATGGCTAAG : GTTGTAAGAGACAAGCGGACTGGTAAGACCAGGGGATATGGATTTGTGAGTTTTTCCAATCCATTGGATCTTGCTGCGGCACTTAAAAAAATGAATG : GAAAGTATGTTGGTAACCGGCCTATTAAACTTTGCAAGAGCAAGTGGCAAGAGAGAATTGACCATGAGGCTGTGGAAAGTCACAAG : AACCGATCACATAAGAAACCAAAGCAAGCAAAGAAGGGTATATTTCACAAGTGAGCATACACCAGCCATGATAAGGACTCAAGCAGCAAGATACTTGAAATGTGTATTAATCAATTTCTTTACCAGTCCCTGCCTGGGAAAGAAGGATCAAAGTATAGTCCCAGGATGCTGAGAGGCGATTTCGATGTCTGCAATTTGTTATTTTCACAATGGTATAATATCCATAAGTTGCTGGTTGATGTCTTTCTTCCTCAAGAACTCTGGATGATCCTTTTAACAAACCATACATTGATAGATTGGGAGAAACTAATTTGGTTTCATACTAACGTTGATAATGTATATGTTGGATATTAAACCTAATGTGGGTGTACCAAAGATGATTTAAGTTCATATTTAGATAGTGGTTCCATTACATACGTTTTGTTTTTTCATTAATAGGGTCGCGGATTAAATTGTATTATAATATGAGAGAGAAAAATACCATTTACTTTGCTGCTAAACTATGTAAACATCATACAGGATCTTTTGGTTACGTTTTTTAAGAAACTAAAAATTTCTTATTTCAAAACTGAATT</gDNA_template>
            <first_frame> S  V  F  P  N  F  S  I  T  R  I  L  K  S  L  I  *  R  S  *  N  L  N  S  P  A  L  R  C  H  R  C  L  Q  R  R  R  Q  L  L  H  R  R  R  N  S  P  T  R  M  A  P  T  F  R  R  L  F  I  S  N  N  I  L  L  S  P  T  *  V  L  L  L  R  P  F  N  F  L  F  L  P  S  I  L  L  L  L  L  F  L  A  F  T  L  C  L  S  F  N  K :   L  N  S  Y  S  K  E  T  H  K  Q  L  H  L  K  H  L  K  M  *  K  L  H  L  R  A  V  K  L  S  T  K  L  R  P  R  R  K  L  Y  R  V  R  Q  Q  D  I  V  G  K  I  L  L  W  Q  S  G  P  R  :  M  I  I  V  Y  S  V  V  I  W  G  M  R  *  M  M  M  S  Y  Q  K  P  F  Q  G  F  Q  L  L  I  W  L  R :   L  *  E  T  S  G  L  V  R  P  G  D  M  D  L  *  V  F  P  I  H  W  I  L  L  R  H  L  K  K  *  M  :  E  S  M  L  V  T  G  L  L  N  F  A  R  A  S  G  K  R  E  L  T  M  R  L  W  K  V  T  R :   T  D  H  I  R  N  Q  S  K  Q  R  R  V  Y  F  T  S  E  H  T  P  A  M  I  R  T  Q  A  A  R  Y  L  K  C  V  L  I  N  F  F  T  S  P  C  L  G  K  K  D  Q  S  I  V  P  G  C  *  E  A  I  S  M  S  A  I  C  Y  F  H  N  G  I  I  S  I  S  C  W  L  M  S  F  F  L  K  N  S  G  *  S  F  *  Q  T  I  H  *  *  I  G  R  N  *  F  G  F  I  L  T  L  I  M  Y  M  L  D  I  K  P  N  V  G  V  P  K  M  I  *  V  H  I  *  I  V  V  P  L  H  T  F  C  F  F  I  N  R  V  A  D  *  I  V  L  *  Y  E  R  E  K  Y  H  L  L  C  C  *  T  M  *  T  S  Y  R  I  F  W  L  R  F  L  R  N  *  K  F  L  I  S  K  L  N  </first_frame>
            <second_frame>  P  F  F  R  I  F  Q  S  Q  E  F  S  N  P  *  F  S  D  R  K  I  S  I  H  R  R  Y  D  V  I  D  A  F  N  V  G  G  S  Y  F  I  V  V  A  I  H  L  L  E  W  H  L  L  S  D  A  F  S  S  P  T  T  S  S  S  A  L  H  R  C  C  S  S  A  R  S  T  S  C  S  F  R  L  S  C  S  C  C  Y  S  W  R  L  H  F  A  S  V  S  T   : S  S  T  V  I  P  K  R  R  T  N  N  Y  T  *  S  T  *  K  C  E  S  C  T  C  E  L  *  N  *  A  Q  S  *  G  Q  E  E  S  C  T  A  *  G  S  R  T  *  L  G  R  S  Y  S  G  R  V  A  R  E :   *  L  S  S  I  L  W  *  S  G  E  *  G  E  *  *  C  P  I  K  S  L  F  K  V  S  N  F  *  Y  G  *   : G  C  K  R  Q  A  D  W  *  D  Q  G  I  W  I  C  E  F  F  Q  S  I  G  S  C  C  G  T  *  K  N  E  W :   K  V  C  W  *  P  A  Y  *  T  L  Q  E  Q  V  A  R  E  N  *  P  *  G  C  G  K  S  Q   : E  P  I  T  *  E  T  K  A  S  K  E  G  Y  I  S  Q  V  S  I  H  Q  P  *  *  G  L  K  Q  Q  D  T  *  N  V  Y  *  S  I  S  L  P  V  P  A  W  E  R  R  I  K  V  *  S  Q  D  A  E  R  R  F  R  C  L  Q  F  V  I  F  T  M  V  *  Y  P  *  V  A  G  *  C  L  S  S  S  R  T  L  D  D  P  F  N  K  P  Y  I  D  R  L  G  E  T  N  L  V  S  Y  *  R  *  *  C  I  C  W  I  L  N  L  M  W  V  Y  Q  R  *  F  K  F  I  F  R  *  W  F  H  Y  I  R  F  V  F  S  L  I  G  S  R  I  K  L  Y  Y  N  M  R  E  K  N  T  I  Y  F  A  A  K  L  C  K  H  H  T  G  S  F  G  Y  V  F  *  E  T  K  N  F  L  F  Q  N  *  I </second_frame>
            <third_frame>   R  F  S  E  F  F  N  H  K  N  S  Q  I  P  N  L  A  I  V  K  S  Q  F  T  G  V  T  M  S  S  M  P  S  T  S  A  A  A  T  S  S  S  S  Q  F  T  Y  S  N  G  T  Y  F  P  T  P  F  H  L  Q  Q  H  P  P  Q  P  Y  I  G  A  A  P  P  P  V  Q  L  P  V  P  S  V  Y  P  A  P  A  V  I  P  G  V  Y  T  L  P  Q  F  Q  Q  :  A  Q  Q  L  F  Q  R  D  A  Q  T  I  T  P  E  A  L  E  N  V  K  A  A  L  A  S  C  E  I  E  H  K  A  E  A  K  K  K  A  V  P  R  K  A  A  G  H  S  W  E  D  P  T  L  A  E  W  P  E   : N  D  Y  R  L  F  C  G  D  L  G  N  E  V  N  D  D  V  L  S  K  A  F  S  R  F  P  T  F  N  M  A  K  :  V  V  R  D  K  R  T  G  K  T  R  G  Y  G  F  V  S  F  S  N  P  L  D  L  A  A  A  L  K  K  M  N   : G  K  Y  V  G  N  R  P  I  K  L  C  K  S  K  W  Q  E  R  I  D  H  E  A  V  E  S  H  K  :  N  R  S  H  K  K  P  K  Q  A  K  K  G  I  F  H  K  *  A  Y  T  S  H  D  K  D  S  S  S  K  I  L  E  M  C  I  N  Q  F  L  Y  Q  S  L  P  G  K  E  G  S  K  Y  S  P  R  M  L  R  G  D  F  D  V  C  N  L  L  F  S  Q  W  Y  N  I  H  K  L  L  V  D  V  F  L  P  Q  E  L  W  M  I  L  L  T  N  H  T  L  I  D  W  E  K  L  I  W  F  H  T  N  V  D  N  V  Y  V  G  Y  *  T  *  C  G  C  T  K  D  D  L  S  S  Y  L  D  S  G  S  I  T  Y  V  L  F  F  H  *  *  G  R  G  L  N  C  I  I  I  *  E  R  K  I  P  F  T  L  L  L  N  Y  V  N  I  I  Q  D  L  L  V  T  F  F  K  K  L  K  I  S  Y  F  K  T  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0036C23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102339" stop="102040"/>
                    <exon start="101210" stop="101033"/>
                    <exon start="100407" stop="100310"/>
                    <exon start="98430" stop="98334"/>
                    <exon start="97864" stop="97779"/>
                    <exon start="97672" stop="97619"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFSEFFNHKNSQIPNLAIVKSQFTGVTMSSMPSTSAAATSSSSQFTYSNGTYFPTPFHLQQHPPQPYIGAAPPPVQLPVPSVYPAPAVIPGVYTLPQFQQAQQLFQRDAQTITPEALENVKAALASCEIEHKAEAKKKAVPRKAAGHSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPTFNMAKVVRDKRTGKTRGYGFVSFSNPLDLAAALKKMNGKYVGNRPIKLCKSKWQERIDHEAVESHKNRSHKKPKQAKKGIFHK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0036C23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97618" stop="97319"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYTSHDKDSSSKILEMCINQFLYQSLPGKEGSKYSPRMLRGDFDVCNLLFSQWYNIHKLLVDVFLPQELWMILLTNHTLIDWEKLIWFHTNVDNVYVGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="107908" PGL_stop="113089"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107908" e_stop="107930"/>
            <exon e_start="108845" e_stop="108874"/>
            <exon e_start="110009" e_stop="110221"/>
            <exon e_start="110322" e_stop="110543"/>
            <exon e_start="111190" e_stop="111351"/>
            <exon e_start="111725" e_stop="112093"/>
            <exon e_start="112410" e_stop="113089"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.411" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.986" e_score="0.986"/>
          <exon-intron don_prob="0.989" acc_prob="0.556" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.704" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107908" e_stop="107930" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.411" acc_prob="0.928">
            <gDNA_intron_boundary i_start="107931" i_stop="108844" i_length="914"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108845" e_stop="108874" e_length="30"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108875" i_stop="110008" i_length="1134"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="110009" e_stop="110221" e_length="213"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.986">
            <gDNA_intron_boundary i_start="110222" i_stop="110321" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="110322" e_stop="110543" e_length="222"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.556">
            <gDNA_intron_boundary i_start="110544" i_stop="111189" i_length="646"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111190" e_stop="111351" e_length="162"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="111352" i_stop="111724" i_length="373"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="111725" e_stop="112093" e_length="369"/>
          </exon>
          <intron i_serial="6" don_prob="0.704" acc_prob="0.992">
            <gDNA_intron_boundary i_start="112094" i_stop="112409" i_length="316"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="112410" e_stop="113089" e_length="680"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107908" stop="107930"/>
              <exon start="108845" stop="108874"/>
              <exon start="110009" stop="110221"/>
              <exon start="110322" stop="110378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110366" stop="110543"/>
              <exon start="111190" stop="111351"/>
              <exon start="111725" stop="111847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111332" stop="111351"/>
              <exon start="111725" stop="112093"/>
              <exon start="112410" stop="112796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111851" stop="112093"/>
              <exon start="112410" stop="112482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112063" stop="112093"/>
              <exon start="112410" stop="113010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112064" stop="112093"/>
              <exon start="112410" stop="113089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112064" stop="112093"/>
              <exon start="112410" stop="112944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210474" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGATCAGTGGATCAAGAATAT : TCTGGAGGATGGGGACCGAACTTGTTAGAC : CTTGGTAATGGTAGTGTTGACAATAGGAACCTTGGTGATGCTGAGAGATTTGGATTTGAACCTGGTCCAGAGTTTACTCTGGAAGCATTTCAGAAGTATGCTGATGACTTTAAGGCCCAGTACTTCAGGCAAAATGAAGGACAATGCCCCTCCTTGGAGAACATCGAGGGTGAATATTGGCGGATGGTCGAGAAACCCACTGAAGAGATTGAG : GTGCTTTATGGGGCTGACTTGGAAACTGGAGTATTTGGAAGTGGGTTCCCTAAACATGACCATCAAGTTGGCTCTTCTGACACCAAGTATCTGAACTCAGGGTGGAACTTGAATAATTTTCCAAGGCTTACCGGTTCTGTTCTTACATATGAGAGCAGTGATATATCTGGTGTCTTGGTGCCGTGGCTGTACATAGGAATGTGCTTTTCATCGTTCTGTTGG : CATGTTGAAGATCACCATTTATACTCATTAAATTACATGCATTTCGGGGCTCCAAAAATGTGGTATGGTGTGCCTGGCGCAGATGCATCAAAGTTGGAGGCTGCTATGAGGAAACACTTACCTGATCTCTTTGAAGAGCAGCCAGATCTTCTTCACAAGCTG : GTTACACAACTATCTCCCTCCATATTGAAGTCTGAGGGAGTCCCAGTGTATCGTTGTGTGCAAAATCCTGGAGAGTTTGTTTTGACCTTCCCAAGAGCATATCATGCTGGTTTCAATTGTGGCTTCAATTGTGCTGAAGCAGTAAATGTTGCTCCTGTTGATTGGTTACCCCATGGGCAGAATGCGATTGAGCATTACCGCGAGCAAGGACGGAAAACTTCCATATCCCATGATAAACTATTATTAGGAGCAGCTCGAGATGCAGTCAAAGCGCACTGGGAACTTAATTTATTGAGGAAGAATACCTCAAATAATTTAAGATGGAAAGATGTTTGCGGAAAAGATGGAGTTTTGTCAAAAGCATTGAAG : AACCGAGTTGAGATGGAGAGAGTCAGGAGGGAGTTTCTTTGCAATTCTTCACAAGCACTAAAGATGGAGAGCACTTTTGATGCTACTAATGAGAGGGAATGTAGTGTGTGTTTTTTTGATCTACACCTGTCCGCAGCCGGCTGTCACAATTGTTCGCCCGACAAATATGCATGCTTGAACCATGCAAAACAACTGTGTACTTGTTCCTGGGGTGCCAAATTTTTCCTCTTCCGTTATGACATCAATGAATTAAATGTACTAGTTGATGCTTTAGAAGGGAAATTGAGTGCAATTTATCGATGGGCAAGACAAGATCTTGGATTAGCTTTGAGTTCTTATGTAAATAAAGAGCGGCAAGTTGCAGGGATTGCTGGTAAATTATCTCTTAAACCTGAGGAATCAGTGCTAAAAGAGGCAAGTGCAGGACCCTCTATAGCTTCCGTGAAAAAGGAAAAAGATGATGGAACTTCAGCACTCTTGATGAAGGCCAGCAGCAGTGCTTTTTCACCGCATAAAGATAAACTATCCAGGGAGCCATTAGCTTCAGAATCAATCAAGGCGTCCTCTATGCCTGACAATGCTTCTCATGGAATTGAGGGGGCACAGAATGGCTTCCAGGGCAGAAGTGAATCCTTAAAGGTGGGTCCTGTTTATAGAACTCCAGTTACTCAGCTGTCCGT</gDNA_template>
            <first_frame> L  D  Q  W  I  K  N  I :   L  E  D  G  D  R  T  C  *  T :   L  V  M  V  V  L  T  I  G  T  L  V  M  L  R  D  L  D  L  N  L  V  Q  S  L  L  W  K  H  F  R  S  M  L  M  T  L  R  P  S  T  S  G  K  M  K  D  N  A  P  P  W  R  T  S  R  V  N  I  G  G  W  S  R  N  P  L  K  R  L  R :   C  F  M  G  L  T  W  K  L  E  Y  L  E  V  G  S  L  N  M  T  I  K  L  A  L  L  T  P  S  I  *  T  Q  G  G  T  *  I  I  F  Q  G  L  P  V  L  F  L  H  M  R  A  V  I  Y  L  V  S  W  C  R  G  C  T  *  E  C  A  F  H  R  S  V  G :   M  L  K  I  T  I  Y  T  H  *  I  T  C  I  S  G  L  Q  K  C  G  M  V  C  L  A  Q  M  H  Q  S  W  R  L  L  *  G  N  T  Y  L  I  S  L  K  S  S  Q  I  F  F  T  S  W :   L  H  N  Y  L  P  P  Y  *  S  L  R  E  S  Q  C  I  V  V  C  K  I  L  E  S  L  F  *  P  S  Q  E  H  I  M  L  V  S  I  V  A  S  I  V  L  K  Q  *  M  L  L  L  L  I  G  Y  P  M  G  R  M  R  L  S  I  T  A  S  K  D  G  K  L  P  Y  P  M  I  N  Y  Y  *  E  Q  L  E  M  Q  S  K  R  T  G  N  L  I  Y  *  G  R  I  P  Q  I  I  *  D  G  K  M  F  A  E  K  M  E  F  C  Q  K  H  *  R :   T  E  L  R  W  R  E  S  G  G  S  F  F  A  I  L  H  K  H  *  R  W  R  A  L  L  M  L  L  M  R  G  N  V  V  C  V  F  L  I  Y  T  C  P  Q  P  A  V  T  I  V  R  P  T  N  M  H  A  *  T  M  Q  N  N  C  V  L  V  P  G  V  P  N  F  S  S  S  V  M  T  S  M  N  *  M  Y  *  L  M  L  *  K  G  N  *  V  Q  F  I  D  G  Q  D  K  I  L  D  *  L  *  V  L  M  *  I  K  S  G  K  L  Q  G  L  L  V  N  Y  L  L  N  L  R  N  Q  C  *  K  R  Q  V  Q  D  P  L  *  L  P  *  K  R  K  K  M  M  E  L  Q  H  S  *  *  R  P  A  A  V  L  F  H  R  I  K  I  N  Y  P  G  S  H  *  L  Q  N  Q  S  R  R  P  L  C  L  T  M  L  L  M  E  L  R  G  H  R  M  A  S  R  A  E  V  N  P  *  R  W  V  L  F  I  E  L  Q  L  L  S  C  P  </first_frame>
            <second_frame>  *  I  S  G  S  R  I   : F  W  R  M  G  T  E  L  V  R   : P  W  *  W  *  C  *  Q  *  E  P  W  *  C  *  E  I  W  I  *  T  W  S  R  V  Y  S  G  S  I  S  E  V  C  *  *  L  *  G  P  V  L  Q  A  K  *  R  T  M  P  L  L  G  E  H  R  G  *  I  L  A  D  G  R  E  T  H  *  R  D  *   : G  A  L  W  G  *  L  G  N  W  S  I  W  K  W  V  P  *  T  *  P  S  S  W  L  F  *  H  Q  V  S  E  L  R  V  E  L  E  *  F  S  K  A  Y  R  F  C  S  Y  I  *  E  Q  *  Y  I  W  C  L  G  A  V  A  V  H  R  N  V  L  F  I  V  L  L   : A  C  *  R  S  P  F  I  L  I  K  L  H  A  F  R  G  S  K  N  V  V  W  C  A  W  R  R  C  I  K  V  G  G  C  Y  E  E  T  L  T  *  S  L  *  R  A  A  R  S  S  S  Q  A   : G  Y  T  T  I  S  L  H  I  E  V  *  G  S  P  S  V  S  L  C  A  K  S  W  R  V  C  F  D  L  P  K  S  I  S  C  W  F  Q  L  W  L  Q  L  C  *  S  S  K  C  C  S  C  *  L  V  T  P  W  A  E  C  D  *  A  L  P  R  A  R  T  E  N  F  H  I  P  *  *  T  I  I  R  S  S  S  R  C  S  Q  S  A  L  G  T  *  F  I  E  E  E  Y  L  K  *  F  K  M  E  R  C  L  R  K  R  W  S  F  V  K  S  I  E   : E  P  S  *  D  G  E  S  Q  E  G  V  S  L  Q  F  F  T  S  T  K  D  G  E  H  F  *  C  Y  *  *  E  G  M  *  C  V  F  F  *  S  T  P  V  R  S  R  L  S  Q  L  F  A  R  Q  I  C  M  L  E  P  C  K  T  T  V  Y  L  F  L  G  C  Q  I  F  P  L  P  L  *  H  Q  *  I  K  C  T  S  *  C  F  R  R  E  I  E  C  N  L  S  M  G  K  T  R  S  W  I  S  F  E  F  L  C  K  *  R  A  A  S  C  R  D  C  W  *  I  I  S  *  T  *  G  I  S  A  K  R  G  K  C  R  T  L  Y  S  F  R  E  K  G  K  R  *  W  N  F  S  T  L  D  E  G  Q  Q  Q  C  F  F  T  A  *  R  *  T  I  Q  G  A  I  S  F  R  I  N  Q  G  V  L  Y  A  *  Q  C  F  S  W  N  *  G  G  T  E  W  L  P  G  Q  K  *  I  L  K  G  G  S  C  L  *  N  S  S  Y  S  A  V  R </second_frame>
            <third_frame>   R  S  V  D  Q  E  Y  :  S  G  G  W  G  P  N  L  L  D  :  L  G  N  G  S  V  D  N  R  N  L  G  D  A  E  R  F  G  F  E  P  G  P  E  F  T  L  E  A  F  Q  K  Y  A  D  D  F  K  A  Q  Y  F  R  Q  N  E  G  Q  C  P  S  L  E  N  I  E  G  E  Y  W  R  M  V  E  K  P  T  E  E  I  E  :  V  L  Y  G  A  D  L  E  T  G  V  F  G  S  G  F  P  K  H  D  H  Q  V  G  S  S  D  T  K  Y  L  N  S  G  W  N  L  N  N  F  P  R  L  T  G  S  V  L  T  Y  E  S  S  D  I  S  G  V  L  V  P  W  L  Y  I  G  M  C  F  S  S  F  C  W  :  H  V  E  D  H  H  L  Y  S  L  N  Y  M  H  F  G  A  P  K  M  W  Y  G  V  P  G  A  D  A  S  K  L  E  A  A  M  R  K  H  L  P  D  L  F  E  E  Q  P  D  L  L  H  K  L  :  V  T  Q  L  S  P  S  I  L  K  S  E  G  V  P  V  Y  R  C  V  Q  N  P  G  E  F  V  L  T  F  P  R  A  Y  H  A  G  F  N  C  G  F  N  C  A  E  A  V  N  V  A  P  V  D  W  L  P  H  G  Q  N  A  I  E  H  Y  R  E  Q  G  R  K  T  S  I  S  H  D  K  L  L  L  G  A  A  R  D  A  V  K  A  H  W  E  L  N  L  L  R  K  N  T  S  N  N  L  R  W  K  D  V  C  G  K  D  G  V  L  S  K  A  L  K  :  N  R  V  E  M  E  R  V  R  R  E  F  L  C  N  S  S  Q  A  L  K  M  E  S  T  F  D  A  T  N  E  R  E  C  S  V  C  F  F  D  L  H  L  S  A  A  G  C  H  N  C  S  P  D  K  Y  A  C  L  N  H  A  K  Q  L  C  T  C  S  W  G  A  K  F  F  L  F  R  Y  D  I  N  E  L  N  V  L  V  D  A  L  E  G  K  L  S  A  I  Y  R  W  A  R  Q  D  L  G  L  A  L  S  S  Y  V  N  K  E  R  Q  V  A  G  I  A  G  K  L  S  L  K  P  E  E  S  V  L  K  E  A  S  A  G  P  S  I  A  S  V  K  K  E  K  D  D  G  T  S  A  L  L  M  K  A  S  S  S  A  F  S  P  H  K  D  K  L  S  R  E  P  L  A  S  E  S  I  K  A  S  S  M  P  D  N  A  S  H  G  I  E  G  A  Q  N  G  F  Q  G  R  S  E  S  L  K  V  G  P  V  Y  R  T  P  V  T  Q  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0036C23.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107910" stop="107930"/>
                    <exon start="108845" stop="108874"/>
                    <exon start="110009" stop="110221"/>
                    <exon start="110322" stop="110543"/>
                    <exon start="111190" stop="111351"/>
                    <exon start="111725" stop="112093"/>
                    <exon start="112410" stop="113087"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1695</number_coding_nucleotides>
                  <number_encoded_amino_acids>565</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSVDQEYSGGWGPNLLDLGNGSVDNRNLGDAERFGFEPGPEFTLEAFQKYADDFKAQYFRQNEGQCPSLENIEGEYWRMVEKPTEEIEVLYGADLETGVFGSGFPKHDHQVGSSDTKYLNSGWNLNNFPRLTGSVLTYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHFGAPKMWYGVPGADASKLEAAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYRCVQNPGEFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLPHGQNAIEHYREQGRKTSISHDKLLLGAARDAVKAHWELNLLRKNTSNNLRWKDVCGKDGVLSKALKNRVEMERVRREFLCNSSQALKMESTFDATNERECSVCFFDLHLSAAGCHNCSPDKYACLNHAKQLCTCSWGAKFFLFRYDINELNVLVDALEGKLSAIYRWARQDLGLALSSYVNKERQVAGIAGKLSLKPEESVLKEASAGPSIASVKKEKDDGTSALLMKASSSAFSPHKDKLSREPLASESIKASSMPDNASHGIEGAQNGFQGRSESLKVGPVYRTPVTQLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 136 chains have been computed
$ 
$ memory statistics:
$ 339672 bytes spliced alignments in total
$ 63 spliced alignments have been stored
$ 5391 bytes was the average size of a spliced alignment
$ 18416 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1841 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 168 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 17:31:57
-->
