<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:32:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0044D11-3Cp1n/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0044D11-3Cp1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0044D11-3Cp1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339900" ref_strand="+" ref_description="SGN-U339900        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttagtgcgtgagctcatggaacttgaggtgaagagattttcccttttcgtgctgttcctttacatcgtttgatccagaacataaattatcacgaggcaaagcacaagcatttgaaaccaaggcaaaggatatgcagtgtgaattaactacagcaaaagacaagctggaaaaatcaaggacagaaatccatggcacatgatcagagagaggtaacatctaccccgaattcacctttattgtcattggccaagcaaattgagaaggaaaaacatgtgtttgtcggttgaaaaaatgccattcagaacttgcaaaatcaaagaggtgttgaagtgatttcaacaaaagattttccacccgtttctcttgggaaacaactagagaaggaaaagtgcatgtttatgcactgtctgagggaaaatcgcggagccaatgacagcagtggtagatcagaactttcttctgttgggataagaacagaacgttcttgcagcaaaaaatcaggagtactaaaaaagccaccatttagagatgttgggaattcatcaccattattggtgaggcaaaacagtaaagcagtttatcctttgcacaacccttaaagctaagtaagccaaatgtctctttgttttagatttttgtcatgttatttgtcttccttcagtgatttttgcttagtattgattggtggaagccctttgtagagcaacagttttggtagtaataagagtatttgcattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0044D11-3Cp1n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0044D11.1" temp_strand="-" temp_description="C04HBa0044D11.1  CU570871.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0044D11 sequenced_by:sanger upload_account_name:uk">
        <position start="8991" stop="1550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8691" g_stop="8597" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8596" i_stop="2497" i_length="6100">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2496" g_stop="1850" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="740" r_length="645" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0044D11.1" gen_strand="-" ref_id="SGN-U339900" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0044D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8691" e_stop="8597"/>
          <exon e_start="2496" e_stop="1850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGCGTGAGCTCATGGAACTTGAGGTGAAGAGATTTTCCCTTTTCGTGCTGTTCCTTTACATCGTTTGATCCAGAACATAAATTATCACGAGGTAAAGAGTGCTTTCATAAATAGATTAATTTTAATAAACTATTGTCTCAAAAGTCGAAACAAGCTTGTCTATCTTCATGTCACTTGCCTCTGGAGGGAAATGATGCACACATGTGAAACCATGCCTTAATTGTTTTTTTGCTCAAAGTGTAGTTTTTCTCAAAGTGTAGTTTTGACATTCAGAATTATGTTAACTGTTGCTTTCCCCTCCATCATCCTATATGAGCTTCCACTAAAATTAAATATTAATGCACATGGTGGTATGAGTCTCTATTCTAAAAGCCTTAAGAGGTAAAAATATTTTTATTTCTCTTCTCAATGCCGGGTTAAAGGTTCATAAAACTGGTCGTGAACACCATTTGTTCCCTCTGCCCTCATCCTTCCCTCTGCCCTCATCCTTGCCTTGGTTCTCTGTTTGTTCTCTCTGCTTCTTCTATGGGTAGTTTCCGTCTGTCAATCTTTTTGGTTGGAAAGGTCAAGTCCTTTTATATAATGAAGTTCCATATGAATGCTTTGTATTGTCTTTTTACTTATATAGATGATGATGAAATGATGATTTTCTACTTCATCTTGAGTTTACTTGGAGAAATATACTTGTTTCTGAGGTCTTGTTGAAATTTCTTTTATGATGAGTGTGGGTTTCGGATGTGATGAATTTAGATGTTAGATGAGTAGGATAGAGAGCGGATAATAGGCCCATACAATTATCTCTTACTTTTTTTGCAGATGTGTTTTCCACTTATCATTATAAGTGGTAATGCACATTATACTAAGATATGTCAGGTTGTTATCTGTTCATAATCTTTGAAGTTATTTTGCCGGAAACTGATTTACTCTTATGCATGTATATATCTTAACTAACGGATTTACTATTTCACTTCCTAATGATGTTGTGATGATTATTAGATTCCAACAGCCACAACCTAATATCTGAGTCCATCAAGGCTTATCATTTTGCTTTATCCGCATGTTAGACTCGAAAGCATGAGTCTTTTTACGTTTGGGAACTTCTTCCCAAACAGCATATAGATAATCAAGTAGAAACACCATTCATTACGAGACAAGGAGGGAAGTTTTACAGGACATGAAATTCGACTATACATCTCAATTGTGTCAAGAAGGAAAAATTCACAGAACATGATGTGTACCATTAATAACCATTGGCCCAGCTTTGTTGTGTTTAAACCATGTAAATGAAGGGACAATAAAGCTAGCGAAGGATATACCATTATAAAGCGAGTTGTACCATAATACAAATAAAATGGGCGGTGAACTAGTCGGACAAAAGTCACATTGCCAAAACAATGTGAATGTAAAGTGTGCTAAGGAGGGGTGGGCGGGTAACTGGAAGCACAGGGGCAGCAAATTGAAACAGTAAACATGAGATAACATTTTTTTTGTACGTTAAGTATCAGTTCCACAATCATTATTCATTGCCTGATGGATATTGCAGAGCATTCTTGGACAGATGAAGGCTGTCAGTGGTTCTTGGTTTCTCCGCAGGCATTCAATCCGTAATTTTGACATGTGAGTGTGTGCCCATTCGAGGGGGACCGGAGGTAGTTTAATTGATGAAGCAAAAAAGAAAGACAATTTTGTTGTGGCCAACGATGAAGAAGTAGAAGGTATAATCTGTACCCAGGCAATCAATTGGAGGGGTTAGGTGTGTAGGATGGACTCTATTTCTTTCCTCCACTGGTGTATTCTTGCGTGTTTATGTATAAGGTGTATAATGAAAGTAGTAAGTTGCAGGAAATCACAATTAGTGTCCCGCACAAGTTGAAGTTTGCGTAAAGTAGCACAAGTGTATTTATTCTAAGCACTGAAAGATTGAACGTTATAAAATGTAGCAGCAACGAAGGAGAACTAATGCATGGATTCAGTAGCTGTTGAATGTAGTCTCAACAAATTTTGGAATAGAGAAAGGGTAAAGAGATATTTGCAGTAAAATTAGATACGTGGCAAGCCATAAGAATGAACAATAAGCTTGCAAAAAAAGTCAAAGGAGGCAGTCTTTGACACATGAGAACTTAAACAAGAGGAAGCCCAATCTACATTCTAGTTGCTATTTATGTGAAGAACAGGTGGAGACAGTCAACCATCTTTTTTTACACTGCAAATGGACAGATCAATTGTGCCAAAAGAGGAAGATCAAGTGGACAAAGCTTGGGAGAATTATAAAAGTCCTAAAATGCTGGAACAGGGATGGGATGGAAATGCAGGAAAGAAAGAGAAGAGATGAAGGATTGTCCCAGCTTGCATTTGGTGGAGAATTTGGAAGAAAAGGAATCAAAGATGTTTTGAAGGAAAACAGAACAATATCCAGAAGATAAAGACAAATTGCCTAGGGCTTTCTATTTTTGGTAAGCAAGTAGTAATAGGGGATGCTGAAAATGTGTTTAATATCATTGACTGGCTTCTGGTGGTAACTAGAAGATGTTATAAATGATGTAAGTAAAACTTTTTGGAGGGGGACTACACTTTGATGTAGTATACCTGTGGATATATAGAAGTAAATGTTACCTCTCTTTAAAAAAAAAGATATGTAAGTAATAACAACTAAGGGAGGTATCATATTGCGGAATTACATAAAGGAGGCTTAATGGTGCCCAAATCACACACGCAAGTGTACGTAGTCGTTCAAGTATTTAAGTGGCTTTTATAACCGGATGTCATACCACAGGGACTCACGATTAGAATCACTTAATTTCCCCAAAACTTTCAGCTTAACACAAGTGTTATCAAGATTTCAAGAGTGATTTATTTTTTAATCAAAATGTTAAACAAAATTAAACAATAGCGATTCAATTTCAAGGGTTTCAAATAATAATTGGGTAAAGTCCAGGGCTGCAACTCTTATCAGGATTCATGCAATTTATCTTATTTAAATGGATGTTTATCAACTATCAAATTAATGAGCACATGGTTAAGTGTGTGATTATGGTCTTTCGATCTCTAATCGCCTACGATAAATGACAACCTAATCACATCGTGAGCGGGGATAGGTTGGATCAAGTACCGAGCATTACGATTTCTTCCTGTATAATGATCAACATGGTTTTTAGTTATATCCCTATCATAGATGCAAATTAACCCTAATTAGTAAGAGAAAATCATGCTCCTTATGCCCCAAGTTCTATCCTCTTATTCCTCTCCCGAGTTCAATTCGGACAATGTGTTTATTTCAATGATGATCAGGCACGAAATATGAAAAACAAGAACATAAGAGAATTCATATAATAGTTAAATACAATCCATAAAAACTTGATCAATTACAATATTCCTGTAGCCACAACACTAGAACTAGGGTATTTAGCTACTCATAATGGTATTGTCGATCAAACAATGTTTAAATGACATACAAAGATCGAAAATAGAAAAGTTCAGGAAAGAACCCTAAAAACTGATGAAGTAGCTCTCCAAATCATTGTTCTTTTGAACCCAGAAAAAGAATAATTTAATAAAATAGAATATTAACCTATTTATAGTAAAGTCGAAACGGCCAAATCTGACATCTATAGGCGCGATGCGGAGAGCCTGACAAATTCCATTTTGAGAATATTTTCTCTTCTCCGCGACGCGGCCTTGACACGGACCGTTCTGCCTCAACTCAAATTTTGCGAACAAGTTTCAAAATCCCTCACCACAGCATGAAGAAGGAAAAGTGTGTTCTGCCTCAGTTTGCTAATTTGCATCCACGAATCACATCGTTCTCCTCGACGCGTAGAGGATACAAATCTCCATTGACTTCATTTTTTCACTCTTCCTTCTTGCTGCTTTTCGGCTTGGTTCCTTTCACACTTTCCGGTGCCCATTTAAATGCTCGTTTCTTTATCCAAGCTCACCTATACAACTAATCATGTTGGTTAGCTCATATACAACCAAAAGACTCGATACGACTATAAAAAAACACAAATTGAATTCAAACTTGGCTTAAATATGGATATTATTAGGTTCCTAGGCATATAAATACGCCTAAGATCACTTAAAGTGTGAATAAGGCTGGGGCAGCCAATAAAGGGTGAAATTAGCCATATGAGGAGTCCAATTTTTCTTTTTTGATGATGGGAAATGTGAGAAGCTTCCCAAGGCTTACAGGGGCAGGAGTATAGCAAAGTGAAAGCAGCATACCTGGATGATCTGGTGTGAGTGTGGCAGGCTCAGTGCTAAACATACAAGTCTGGATTGTAGTGTAATGTTTAATAGAAGAAGTCGTTATTGGGACCGTGCTGGGAAAAGGGAGAATGGATAGTAGGTTGAATGAGTATCATACCTGAATAGTGACGTATTTGGTCCGCCGTCGAGCACAACTTCGAAGGCAGTAGTGGAGAACTTTGGGATTTTATTGAGGTTGGTGAGCAGAAACAGGCAGAAGCAGTAGACATGAAGTAGTTTAGAGAATCAGAATAGTCTGTGGTTCAATTCTTAAGATGGTGGTGTCCGTTGTAAATAGAGACAACGTTTCTGAAGGGCCGCAATAAGTTTAAAAGGAAGGAAGCGGGGAAGCGGTTGTTTAGGGTTGATGGGTTGAAGCGATGTTTGATTGTGGCGTTTTTCTGGAGAATGGGAAGGGTAGTTGGTGAGAATATATAAGTTTGCGGTGGCGCCACTTCATCTGGTTGAGGGTTCTCTTATATATAGATATACGATTGTGATGAAAAAACATCAACTATCCATTTGCAATAAATATTCTGATAACTTATGTTAAAAAACTAACAATTGAAATAAATACGTGTGCCAAGCACATGACTTCCTTCCAAATATCCATATTCGGTCTGATTCTAAGTAGCTCGGACTTGGGTGCGGGTGTTCGTTACGGGTGTGATCTGGAGGTTGGATCCTTCATGATCTAATTTTAAGATTCAGGGATATGGATCCATGTATGGAGACGGGTGCGGGGATTCACCTAAATATAATTAAGATATCTAAAAAGAAAGTTATAAAACCTAACTTATGAGATATATGGAGAATTGGGGAGAATCTTGGAAGGAAATCAAAAGAAAATGAGTGAATTAGAAATTTCTATATAGAAGATATTTCATTTTCTTCAATTTCATCTTAGCTTTTGTATTGATTATAGAAATTATTAAAACTGTCCAAAATTTCTCTATCGATTTTGGTCAAAGTACCCAAAATAAGTTGACCAAATCGGACACAGATCCCACACCCACACTCATGTCGTGTCGACAAGGGTGCGGCACTAAAAGTGAAAAGTCTAAGCAACTTAGTTCTGATTGAATATAAACAGGAAAAGAAATGGTTAAAAAAATACAAAAAAGAACCCGGCATACCAGTAGAAAAACCCAGCAAAACAGCACCTAACCAGCAAAAAACAGCAATGAGTTGAAAAAATCAGCAGAAAAATTGACAAACCACTAGAAAAAACAACACCAAATTAGCCAAAAAGCAGCCATACAACAAAAAAATTGGTAAACAAATAGTAAACAGTAAAAGGATCAACAACAAAAAAGTTTAAAACTGGTAAATCAGTTGTAAAAAGCAAATAAATCAGTAATTTTTTTGGGCAAAACAGAAGAAAAACAGCAAAAAGAAACCTATATAATATATTTAGACTTAAATGAGGAAAATAATACTTAGAGAAAAAAAGAAGAAGCTAAAACACATATGAGCTCTGCGATCCCGTCAGAGTATAACCATTAGTTGGTAATATCCCGATGGAGGGAAAACTTTAAACTTGAAACATACGTATATGAGAAGAACAAAATTACAATAGAATATGGAGATTTGGGGGGGAAATGTGCTTGACACAGATGTTTATTTCAGCCGTTAGTTTCTTAACAAAAGTTAATAGAGGGATGTTTCTTGTAAATTTTGGAAACTTGAAGGATGTTTCTTGTTCACAGTTGTAGCGTAAGGATGTACCCTAAGTTTGGGTATTACTTCAGGGATTAGCCAAAACTCCACCTTATATATGCAATAGTATGGTGAAAATAATTATTATATTTCTTTTATACTATTAATAATAATGTATTAAACTTAATTGTCAAATGTAGAAATAAAGGAAAACAGGTTTTCAGACCTCACTTTGTGGGATTTTACTCGATATGTTGTTTTTGTTATCTCATTTTCTTTGCTTTTAGGCAAAGCACAAGCATTTGAAACCAAGGCAAAGGATATGCAGTGTGAATTAACTACAGCAAAAGACAAGCTGGAAAAATCAAGGACAGAAATCCATGGCACATGATCAGAGAGAGGTAACATCTACCCCGAATTCACCTTTATTGTCATTGGCCAAGCAAATTGAGAAGGAAAAACATGTGTTTGTCGGTTGAAAAAATGCCATTCAGAACTTGCAAAATCAAAGAGGTGTTGAAGTGATTTCAACAAAAGATTTTCCACCCGTTTCTCTTGGGAAACAACTAGAGAAGGAAAAGTGCATGTTTATGCACTGTCTGAGGGAAAATCGCGGAGCCAATGACAGCAGTGGTAGATCAGAACTTTCTTCTGTTGGGATAAGAACAGAACGTTCTTGCAGCAAAAAATCAGGAGTACTAAAAAAGCCACCATTTAGAGATGTTGGGAATTCATCACCATTATTGGTGAGGCAAAACAGTAAAGCAGTTTATCCTTTGCACAACCCTTAAAGCTAAGTAAGCCAAATGTCTCTTTGTTTTAGAATTTTTGTCATGTTATTTGTCTTCTTCAAGTGATTTTTGCTTAGTATTGATTGGTGGAAGCCTTTTGTAGAGCAAACAGTTTTGGTAGTAATAAGAGTATTTGCATTGCT</genome_strand>
        <mrna_strand>TTAGTGCGTGAGCTCATGGAACTTGAGGTGAAGAGATTTTCCCTTTTCGTGCTGTTCCTTTACATCGTTTGATCCAGAACATAAATTATCACGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGCACAAGCATTTGAAACCAAGGCAAAGGATATGCAGTGTGAATTAACTACAGCAAAAGACAAGCTGGAAAAATCAAGGACAGAAATCCATGGCACATGATCAGAGAGAGGTAACATCTACCCCGAATTCACCTTTATTGTCATTGGCCAAGCAAATTGAGAAGGAAAAACATGTGTTTGTCGGTTGAAAAAATGCCATTCAGAACTTGCAAAATCAAAGAGGTGTTGAAGTGATTTCAACAAAAGATTTTCCACCCGTTTCTCTTGGGAAACAACTAGAGAAGGAAAAGTGCATGTTTATGCACTGTCTGAGGGAAAATCGCGGAGCCAATGACAGCAGTGGTAGATCAGAACTTTCTTCTGTTGGGATAAGAACAGAACGTTCTTGCAGCAAAAAATCAGGAGTACTAAAAAAGCCACCATTTAGAGATGTTGGGAATTCATCACCATTATTGGTGAGGCAAAACAGTAAAGCAGTTTATCCTTTGCACAACCCTTAAAGCTAAGTAAGCCAAATGTCTCTTTGTTTTAG-ATTTTTGTCATGTTATTTGTCTTCCTTCAGTGATTTTTGCTTAGTATTGATTGGTGGAAGCCCTTTGTAGAGC-AACAGTTTTGGTAGTAATAAGAGTATTTGCATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0044D11-3Cp1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343408" ref_strand="+" ref_description="SGN-U343408        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr5:15528131-15529921 FORWARD | Aliases: MKD10.5, MKD10_5(evalue: 1e-68, score=256) genbank/nr: gi|15240991|ref|NP_198689.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] gi|10176899|dbj|BAB10131.1| contains similarity to salt-inducible protein~gene_id:MKD10.5 [Arabidopsis thaliana](evalue: 9e-67, score=256)">
      <seq>agtttgtaagcttatgccccatacacatgcttgttctacccttctgaattcattggtcaaggatgggttgactgatactttgtggaaaatttacaaaaagatgcaaaaaataggggtccttccaaatatctatatctataacgtgcttatgcatgcctgttgtaagtctggtgatgtagagcgggctgatgatttattgagagaaatggagtttaaagctacactgcctgacctttacacttataacacattgatatcattgtactgcaagaaaggcatgcattatgaagctttgtgcgtgcacgataggatggaaagagcaggagtatgtcctgatattgtaacctataattccttaatttacagttactgcagggaagggaggatgagggaggctatgagacttttcaaggaaattaaaggttctacgactaacctggttacttacaccacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0044D11-3Cp1n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0044D11.1" temp_strand="-" temp_description="C04HBa0044D11.1  CU570871.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0044D11 sequenced_by:sanger upload_account_name:uk">
        <position start="12527" stop="11471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12227" g_stop="11771" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0044D11.1" gen_strand="-" ref_id="SGN-U343408" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0044D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12227" e_stop="11771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGTAAGCTTATGCCCCATACACATGCTTGTTCTACCCTTCTGAATTCATTGGTCAAGGATGGGTTGACTGATACTTTGTGGAAAATTTACAAAAAGATGCAAAAAATAGGGGTCCTTCCAAATATCTATATCTATAACGTGCTTATGCATGCCTGTTGTAAGTCTGGTGATGTAGAGCGGGCTGATGATTTATTGAGAGAAATGGAGTTTAAAGCTACACTGCCTGACCTTTACACTTATAACACATTGATATCATTGTACTGCAAGAAAGGCATGCATTATGAAGCTTTGTGCGTGCAGGATAGGATGGAAAGAGCAGGAGTATGTCCTGATATTGTAACCTATAATTCCTTAATTTACAGTTACTGCAGGGAAGGGAGGATGAGGGAGGCTATGAGACTTTTCAAGGAAATTAAAGGTTCTACGACTAACCTGGTTACTTACACCACATTG</genome_strand>
        <mrna_strand>AGTTTGTAAGCTTATGCCCCATACACATGCTTGTTCTACCCTTCTGAATTCATTGGTCAAGGATGGGTTGACTGATACTTTGTGGAAAATTTACAAAAAGATGCAAAAAATAGGGGTCCTTCCAAATATCTATATCTATAACGTGCTTATGCATGCCTGTTGTAAGTCTGGTGATGTAGAGCGGGCTGATGATTTATTGAGAGAAATGGAGTTTAAAGCTACACTGCCTGACCTTTACACTTATAACACATTGATATCATTGTACTGCAAGAAAGGCATGCATTATGAAGCTTTGTGCGTGCACGATAGGATGGAAAGAGCAGGAGTATGTCCTGATATTGTAACCTATAATTCCTTAATTTACAGTTACTGCAGGGAAGGGAGGATGAGGGAGGCTATGAGACTTTTCAAGGAAATTAAAGGTTCTACGACTAACCTGGTTACTTACACCACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0044D11-3Cp1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332521" ref_strand="+" ref_description="SGN-U332521        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | SAP domain-containing protein, contains Pfam domain PF02037: SAP domain | chr3:1123030-1127522 REVERSE | Aliases: T6K12.12, T6K12_12(evalue: 6e-22, score=99.8) genbank/nr: gi|15229259|ref|NP_187076.1| expressed protein [Arabidopsis thaliana] gi|6721160|gb|AAF26788.1| hypothetical protein [Arabidopsis thaliana](evalue: 3e-20, score=99.8)">
      <seq>catcagctcaagacggtcgatgataacggttctatggcctctggaacggaaaaagtgttaaggcttgttttcatggaggaattgatggaacgagctcgaaatgctgattctgcaggtgtatctcaagtcatttatgatatgattgctgcgggtctctcccctggacctcgttctttccatggattggttgttgctcatgtacttcatcgtgacaatgatggcgctgtaactgcctctctctctcctgtttaaatgcaacatctgcctacttcctacaagcttaattttgtttaatttttctgtattattagtgaaactagtaaaataaccggtactttacaaatatcacaaaatttgtaaagtataacttaaaagtatatccggcatttttaattaagtatcccaaaatttataaagtattccttaaagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0044D11-3Cp1n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0044D11.1" temp_strand="+" temp_description="C04HBa0044D11.1  CU570871.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0044D11 sequenced_by:sanger upload_account_name:uk">
        <position start="37762" stop="38794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38062" g_stop="38491" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="463"/>
      <MATCH_line gen_id="C04HBa0044D11.1" gen_strand="+" ref_id="SGN-U332521" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0044D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38062" e_stop="38491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAGCTCAAGACGGTCGATGATGACGGTTCTATGGCCTCTGGAACGGAAAAAGTGTTAAGGCTTGTTTTCATGGAGGAATTGATGGAACGAGCTCGAAATGCTGATTCTGCAGGTGTATCTCAAGTCATTTATGATATGATTGCTGCGGGTCTCTCCCCTGGACCTCGTTCTTTCCATGGATTGGTTGTTGCTCATGTACTTCATCGTGACAATGATGGCGCTGTAACTGCCTCTCTCTCTCCTGTTTAAATGCAACATCTGCCTACTTCCTACAAGCTTAATTTTGTTTAATTTTTCTGTATTATTAGTGAAACTAGTAAAATAACCGGTACTTTACAAATATCACAAAATTTGTAAAGTATAACTTAAAAGTATATCCGGCATTTTTAATTAAGTATCACAAAATTTATAAAGTATTACTTAAAGT</genome_strand>
        <mrna_strand>CATCAGCTCAAGACGGTCGATGATAACGGTTCTATGGCCTCTGGAACGGAAAAAGTGTTAAGGCTTGTTTTCATGGAGGAATTGATGGAACGAGCTCGAAATGCTGATTCTGCAGGTGTATCTCAAGTCATTTATGATATGATTGCTGCGGGTCTCTCCCCTGGACCTCGTTCTTTCCATGGATTGGTTGTTGCTCATGTACTTCATCGTGACAATGATGGCGCTGTAACTGCCTCTCTCTCTCCTGTTTAAATGCAACATCTGCCTACTTCCTACAAGCTTAATTTTGTTTAATTTTTCTGTATTATTAGTGAAACTAGTAAAATAACCGGTACTTTACAAATATCACAAAATTTGTAAAGTATAACTTAAAAGTATATCCGGCATTTTTAATTAAGTATCCCAAAATTTATAAAGTATTCCTTAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0044D11-3Cp1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333176" ref_strand="+" ref_description="SGN-U333176        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | SAP domain-containing protein, contains Pfam domain PF02037: SAP domain | chr3:1123030-1127522 REVERSE | Aliases: T6K12.12, T6K12_12(evalue: 1e-54, score=209) genbank/nr: gi|15229259|ref|NP_187076.1| expressed protein [Arabidopsis thaliana] gi|6721160|gb|AAF26788.1| hypothetical protein [Arabidopsis thaliana](evalue: 8e-53, score=209)">
      <seq>agaggttgatgaagagcttgatgagttgatctcacgtataaagttgcatgaaggaaatacagaattctggaaacgccgctttcttggggagggattaagtgaaaattatggccaacagtcggaaataatagacttagaacctactgatgtggtagatgataatgatgctgttgatgatatcaccaaagatgctgaagatgatgaggcagaagatgacgaggcacaagatgaggaggaagaagtggagcaaactgaaagccaaccagaaataagtgacaggaaggacaaggaagttgaagctgcaaaacctcttcaaatgattggagtgcaactgctaaaagattctgatctaacggctagctcttcaaaaaaatccaggcgaaggctttctagagtagctgcagtggatgatgacgatgatgattggtttccactagacattcatgaagcatttgtggagctgaggaaaaggaaagtatttgatgtatcagatatgtatacaatcactgatgcttggggctggacatgggaaaaagaaatcaagaacaaagctcctcgaagatggtcacaggagtgggaagttgaattggcgatcaaagtgatgacaaaagtaatagaattgggtgggacanccaacattggtgattgtgctatgatattgcgttctgcagtacgagctcctatgccttctgcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0044D11-3Cp1n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0044D11.1" temp_strand="+" temp_description="C04HBa0044D11.1  CU570871.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0044D11 sequenced_by:sanger upload_account_name:uk">
        <position start="50624" stop="57115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50823" g_stop="50826" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50827" i_stop="50925" i_length="99">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50926" g_stop="51327" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="406" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51328" i_stop="52421" i_length="1094">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52422" g_stop="52625" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="610" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52626" i_stop="56727" i_length="4102">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56728" g_stop="56815" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="698" r_length="88" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0044D11.1" gen_strand="+" ref_id="SGN-U333176" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0044D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50823" e_stop="50826"/>
          <exon e_start="50926" e_stop="51327"/>
          <exon e_start="52422" e_stop="52625"/>
          <exon e_start="56728" e_stop="56815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGTAAATGTTATTCCCAGTGTATTAAGTGTAACTAGTTGTCTTGAGATATCATGCAAATCCATGTCATTCCTCACAAACTTTATTGTGTTATTTTTTCAGGTTGATGAAGAGCTTGATGAGTTGATCTCACGTATAAAGTTGCATGAAGGAAATACAGAATTCTGGAAACGCCGCTTTCTTGGGGAGGGATTAAGTGAAAATTATGGCCAACAGTCGGAAATAATAGACTTAGAACCTACTGATGTGGTAGATGATAATGATGCTGTTGATGATATCACCAAAGATGCTGAAGATGATGAGGCAGAAGATGACGAGGCACAAGATGAGGAGGAAGAAGTGGAGCAAACTGAAAGCCAACCAGAAATAAGTGACAGGAAGGACAAGGAAGTTGAAGCTGCAAAACCTCTTCAAATGATTGGAGTGCAACTGCTAAAAGATTCTGATCTAACGGCTAGCTCTTCAAAAAAATCCAGGCGAAGGCTTTCTAGAGTAGCTGCAGTGGTATGACATTTTATGGTGTTCATCGATTGCTAATTATTTGTTATAGCATCTACGTAGAAAGAAAAGTCAGAAGATACAAGCAAGTCATATGTTTGATATCTGCTCTCTCTGTCTCATATGGACCCAAATGGAATATCCACTACATTCCTGTATCTTCCCGTGATATTTTAGTAAATCATTTGGAACAAGATGGGCCTTAATTGGGCAAGACCGTATTCGAAAGATCTATTAAGCCAACCATAAATAGTTTAGGATTGAGGCATTGTTGGTTGATTGATTTAGTTGATGTCTGCTCTCTCGATCCCAGTGGACTCTTTTTCCAATTTCCATCTGAATATCCACATCTCGTCTGGTTCTTCTCATGAAAATTTTTAGTTGTGGACAAGGAAAGTCAAAATCGTCATCGAATTTTTGATGAGCCACATGTCACTCTGAATTCACAATCTTTTCCTTTTTCACCCCAACAGCCAAAATGTAATTTTTGGTGCCTTCTTGTTTCTCATAAATATTGCAGCGATGTGCTTCATCAATAATTTGTTTAATAGTTATGATTCAAAGTAGAAAAACAATTTGGTGAGTAGGGAGAATCATTTTTTTTTTTGAAATAGGTAACTAGTGAGTAGGGAGAATCGTGTGATTACAATTTCCATAGCTGTTGAGGGATTGACATTTATATCATATTTTCCTCTTCCCTCTCCAAGTTCCGACTTTACCTTTACTATATCTACTTTTGTATATTTTAGCTTCATAGTTCGTTCTTAAAATACATCTCTCTGATTCACCATTTTATGAATCTTATAACATTCTGTCTAATCTAGACCACAGAGACGGTGTGCTTTAGGTGACTAAAACTTGTGTGTTTGAATCTGTTGCCTTAGAACATCTTTATTTGTTTCATGGGCAAATGTTTAGCATACAATCAAAAATGGAAATAGTCATCCAGGTAATAACCCTATGTTTCCCTACAAATTACCCTAAAACTTACAAATTTTCGCATAATGACTCATTTACTTCTGGAAACTGCATAAGATTCACAAAAATTGCTGTTTACAAGCATGGGTATTTGATTGATATGTCTTCTCTTATTTGCACAGGATGATGACGATGATGATTGGTTTCCACTAGACATTCATGAAGCATTTGTGGAGCTGAGGAAAAGGAAAGTATTTGATGTATCAGATATGTATACAATCACTGATGCTTGGGGCTGGACATGGGAAAAAGAAATCAAGAACAAAGCTCCTCGAAGATGGTCACAGGAGTGGGAAGTTGAATTGGCGATCAAAGTGATGACAAAAGTATGTTATGATATCCTTTTTAATCTCCTCACCATTTTCAACACAATGTTACATGCAGTCTTTCCTCAATCTACAAGTAACCTCTTGCTAAATAGCATGCGTATAGGTTGAATTTCTATGTAAGTATATGCCGTGACAGATTTTTGAGAGTCCGTGAAACAATGTTGCTGAGAATATCATTAACTAATAAAAGTTGAGTTCCCTCTCAAACTCTTTTATTTTAACATGGTATCCGAGCAGGCAAAGGTCCTGAGATCGAATCTCACTACTACCCAAATTAAAAAGAAATTCCACATGCTTGGCCCATGAAAAGAATTAGACCCGCACGTGAGGGTGCGTGTTGAGTATATCATTAACTAATAAAAATTGAGTTCTCTCTCAAACCCCTGTCATCTCACAAATGTATATTGTTAGACAAGTATAGCTAAACTATCCCTGTTTCCTTACAGACTTAGTAATTAATATCTCTTTGCTCGGTGATTATTCATAGCTCTATGCTAAGATATTGTATTTTGTGTTGAAAAAAAAATGAATTGGTGATATTGCATTTTTTTTGGGGGGGGGGGGGGGACGACCAACATGTGGGATATGACAGCTAGTTGCATAAGGGAAGCTGCAAAAGAGGTGTTGGGGGATTTCTAGAGGAAACTCTAGTGGACAGGAGATTAGTGGGGGAATGGTGAAGTCTAATGGAAAGTGGAAGCAAATAAGGCTGTTTATGCGAAGTTGGTGGAGAGTAAGAACGAGTATGATAAGCGTACTAAGAGGGAAATGTATAAAGTATCAAGGGAGGAGGCAGAGTTGTCGGTTACACCGGCAAAATGAAAGTTTTCTAATGCTTGCATGCGGAGTTATGAGACAAAGGCCGAGATAAGAAGCTGAACAGGCTAGCCAAGGCAAGCGAAGAAGGCCTAAGACCTCAACCAAGTGAAGTGCATCAAAAACAAAGTTTTGGTGGAGTAGACACTCATTAGATGGAGGGGACAAACATTCTTTCTCAAGCTCTTGAATGATGGGAGGGACATGGACATTATACTGGAGAGTTGGAGCTCTCTGAGAGAAAACAAGATTTCGAGTATTGTAGGTCTATAAAGGTTGATGAGATCAAGTGCTATTCGTAGGATGAGCTGGGAAAGAGCGACCAGGCCAGATGAAATTTCGGTGGAGTTCTGCAAGAATATAGGAGGGTAGGCTTGGAGGGTCGTCTAACTGGATAATATATAGAATTGCAGCAACTATAGTGGTGTTGAGCTGCTAATCCATACAGTGAAAATGTTTGGTGGTGGAGATAAGGGTAAAGAGGGTTGTGTCTAATTCTGAGAATCAATTTGAATTCATGTCGGGGCGAACTACCACAGAAGCCATCTATCTTATGAGGAGGCTAATGGAACAAGATAGGGAGTGGAAGATGGATTTACATATGGTGTTCCTCGTCCTAGAAAAGGTTTATGACAAAGTCCCCAGGGTGGTCCCATGGATATGCTTGGAGGCTATAGGTGTAGTTGTGGCTTATACCAGGGCGATTGAGGACATGTACGATGGATCCAAGACTAGGGTGAGGACAATAGTAAGAGACTAAAAGCACTTTCCAGTCATGATGGGGTTACACCAGAGGTCGACTCTTAGTCCATTTTGTTTTGCACTGGTTATGGGTGAATTGCTGTGGTATATCCAAGGTGAGATGCCATGGTGTATGTTGTTTGCAGATAACATAGTATGGATTGATGAGACTTGTGGAGAAGTTGACTCTAGGCTGGAGGTTCAGAGACAAATCGCGGACTCTAAAGGATTCAAGTTGACCAAGAACAAGACTGATATTTAGGGTTCGTTTGGTAGAGTGTATTAGGAAAAATAATGCATGCATTAGCCTTGTGTGTTAATATTACTAGCATCTTGTTTGGTACTCTTTTCAACCTATGTATAACTAATGCTTGCATCAGTTAAACACTCTGTTGTGTATTAGTGTGTGTATTTGCCATGGATTTCTAGGTATTAGCAATGCAATGGTTTTATGCATTAGCAAGATTAAAGACCCAATTGCCCTCGATACCTTTTTACATCTTTTCTACCATAATAGTGGAGGGTATCTGAGGGTATCTTTGTAAATTATTTTTTTATGCAATGCATGCTATTTTTGTATGCATCAAACTAAATAATGCATAAAAATAATCTATGTATAACTAATGCAAGCATAACTAACACATGCATTGCTAATGCAAGCATTAGTAATACACTCTATTTAGCATTATTCTTATACACTCTACCAAACGACCCCTTCATTGATGCTATGCATTAGGTTGGCGCAAAAGTTAGGCTTGATGCTTAGGTCATCCCTATAAGAGGATGTTTCAAGTATTTGGGGTCAATTCAAGGTAATGGTGAGATGAATTATAATGTCACATATCGTATTAGTGTTGGATGGGCAAAATGGAGGCTTGCTTCTAGAGTCTTGTGTGATAAGAAGATACTTTCAAAACTAAAGGTAAGTTCTACAGAGTGGTAGTTAGACCAACTATGTTGTATCGGGCAGAGTGTTGGCCAGTCAAGAACTCTCACATTCAGAAGGTGAAAGTTATGGTGATGAGGATGTTGAGATGGGTGTATCAGCATAGTAAGAGAGATAAAATTATGAATTGAGATATCCAAGACAAGTAGGAGTGTCTTCCATGGTGGAGAAGATGAGGGAATTGAGGTTAAGATGATTTTGGCATATGAAGAGGAGAAGTGTAGTTGCCCCAGTGAGGTGTGAGAGGTTAGCAATGGCGGGCGATAGGTTAGGTAGATGCAAATCGAAGAAGAATTGGGGAAAGGTGATTAGACAAGACATTTGAGCTGACCGAGGAGCAACCTTAGATAGGAAGGTTTGGAGGTTGCGGAATAGGGTAGAAGGTTAGTTGACAGTTGAGCGTTCTCTGGCTTCCTGCAGAATACGCATGGTGGTCGTACTTGTACCTACTTTCTTACCAATAAATTAATACTATTCTCGTAGTTTCTTGTTCTTAGATTTTGGTTATCACATGTGTTCTTTTGTGCTTCGGTTATCACATTATTTTGTTGTGGTTACTGCTCTTCCTTTTTTATGTTGTGTACTACTCTCCATTTTGTATTATTTTGTTGTTGTTACTGCTTCCATTTCCGTATTCCCTTTTTCAATCTGCTTTGAATGCTTTATTTAAGCTGAGGGTCTATCGTAAGCAACCTCTTTATTGTTATGAGGTAGGGGTAAGATTTGCATATACTCTACCCTCCCATACCCTACTTATGAGATTACACTGCATATGTTGTTATTGCATTTTGTGCTTTTACCGTCTACCTATATCTTTTATTTAATACACAGAAAGATAGTAGTTTAGAACACTCAACATATTCACATGAATGATGCCTACATTTAACACTTGCTCTTCCAGATTTTTCATTTTACCAATTCATGCTTCTTCCTAGAAACTTTCATTGTGGCAGTTATGGATCAGAATTTGGTATGACTGGTGGCCAACTTCCTGATGACTGTCTCTCATCTTTGGTTTGAGAAGGAGAATTAAATGAACCCAACATTGAAGATTTGGTTCAATAAAGTTTCATTTTTTCCAAGATTTTCCTACATAATCCAACGTTAGTCTATTATGGTCTTATGAAAAAATCGTTAGCTGCAAAGGATACTCAAAACTCACCTTCATTTTCTTTGCTTCCTGTATCATTATTATCAGCTGTTGCTGCATATACTGAAGTCACTAGTGACTCCAAGCCACGGTAAAACCATACCGGATCTAATGTTCTTACAACTTTCTTGGTTCTTCTTTATTTAGTTTTCTTTGTAGCATTCTCCTGTAACGCTTTATAGGAGTTACAGTCTTGCTTTTCTAGATCTCTTTAAATATTAAGTCTTTCTGGATTTTGGAAGTGATATATCAATAAATTTTCAGTGAACGAAGCCTAGAGTTTTACAACTTTGTTTTCTAATATTGTTGTTCTATTCTGATAGTGAATTATGACATTCTAGCAGAACTGGTTCTATGCTATTTCCTGTCCTTGTAATTAGTGAACTTGGCTTCATGTATGGATTCTTCTGTTTTGCAGTTGTAAACGAAAAATGTTTCTGTCTCAGGTAATAGAATTGGGTGGGACACCAACAATTGGTGATTGTGCTATGATATTGCGTTCTGCAGTACGAGCTCCTATGCCTTCTGCTTTTT</genome_strand>
        <mrna_strand>AGAG...................................................................................................GTTGATGAAGAGCTTGATGAGTTGATCTCACGTATAAAGTTGCATGAAGGAAATACAGAATTCTGGAAACGCCGCTTTCTTGGGGAGGGATTAAGTGAAAATTATGGCCAACAGTCGGAAATAATAGACTTAGAACCTACTGATGTGGTAGATGATAATGATGCTGTTGATGATATCACCAAAGATGCTGAAGATGATGAGGCAGAAGATGACGAGGCACAAGATGAGGAGGAAGAAGTGGAGCAAACTGAAAGCCAACCAGAAATAAGTGACAGGAAGGACAAGGAAGTTGAAGCTGCAAAACCTCTTCAAATGATTGGAGTGCAACTGCTAAAAGATTCTGATCTAACGGCTAGCTCTTCAAAAAAATCCAGGCGAAGGCTTTCTAGAGTAGCTGCAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACGATGATGATTGGTTTCCACTAGACATTCATGAAGCATTTGTGGAGCTGAGGAAAAGGAAAGTATTTGATGTATCAGATATGTATACAATCACTGATGCTTGGGGCTGGACATGGGAAAAAGAAATCAAGAACAAAGCTCCTCGAAGATGGTCACAGGAGTGGGAAGTTGAATTGGCGATCAAAGTGATGACAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAGAATTGGGTGGGACANCCAACATTGGTGATTGTGCTATGATATTGCGTTCTGCAGTACGAGCTCCTATGCCTTCTGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0044D11-3Cp1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346829" ref_strand="-" ref_description="SGN-U346829        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | SAP domain-containing protein, contains Pfam domain PF02037: SAP domain | chr3:1123030-1127522 REVERSE | Aliases: T6K12.12, T6K12_12(evalue: 2e-27, score=119) genbank/nr: gi|15229259|ref|NP_187076.1| expressed protein [Arabidopsis thaliana] gi|6721160|gb|AAF26788.1| hypothetical protein [Arabidopsis thaliana](evalue: 2e-25, score=119)">
      <seq>tttgcagacaacacatagtcttggttatgtatttggaagccctttgtatgacgaaatcatcatattatgccttgatcttggggagcttgatgctgcaattgccatagtggcagatctagagactagcggaatcaaggtcccagatgaaacccttgatagagtaatttctgccaggcagggtagtgatactcctgttaatggttcgcaataggggatctgcatattgcaattttacttgtaggttaggaggaatttagaatagcataccataaatgttgtagcatatagagtctcaaaacaaacaagcgcagaatggagagttagttgtaagcaaaaatagatatggttcattcttgagtgttgcttccaacaccttgtcattggtgtaaaaagttgaaatttacatacttggtacgtgagtagaagttgttaatacgtaaacaaccgtgtttgatttactggttcattgtcagcagtaatagagaagttgatttgctggttcattgtaagaactgtgttttattctgtatacccattagatggcatggtttagaaaactgaggttatacagttttttcaaaagatggacaaaatgatacacagtagttcttgcaacttttcagtgcccagttaagaccctcaggacattgtttatttaaatttttattctataaaggttttgatattttaacctactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0044D11-3Cp1n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0044D11.1" temp_strand="+" temp_description="C04HBa0044D11.1  CU570871.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0044D11 sequenced_by:sanger upload_account_name:uk">
        <position start="56523" stop="58142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56823" g_stop="56861" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56862" i_stop="57182" i_length="321">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57183" g_stop="57850" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="707" r_length="668" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0044D11.1" gen_strand="+" ref_id="SGN-U346829" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0044D11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346829" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56823" e_stop="56861"/>
          <exon e_start="57183" e_stop="57850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGACAACACATAGTCTTGGTTATGTATTTGGAAGGTAAGTTTGGTTTACCTGAAATACTACCTTTTTTATGAATTATGTTTTCGTGCTACTTGCATCAGACTAGCAACAAACAAATAAATGATATAACATCAGCAAAAAGAAGGTTTACACAAAGATTGGCTAAACAAATTGAGTTGCCTTTAGATATTCAAGCTGAGATCGTGTTTACTATATATTGGTTCACTTCCAGCAAATCTTTCTGCTTTGCTGTGCTTCTACTACCATAATTTATCTTGTATATCCTTATCATGGTCTTATCTAAAAGTTTAACGTATTATTTAAATTGATTTATTGATCTTAACCCATTCGTTGCAGCCCTTTGTATGACGAAATCATCATATTATGCCTTGATCTTGGGGAGCTTGATGCTGCAATTGCCATAGTGGCAGATCTAGAGACTAGCGGAATCAAGGTCCCAGATGAAACCCTTGATAGAGTAATTTCTGCCAGGCAGGGTAGTGATACTCCTGTTAATGGTTCGCAATAGGGGATCTGCATATTGCAATTTTACTTGTAGGTTAGGAGGAATTTAGAATAGCATACCATAAATGTTGTAGCATATAGAGTCTCAAAACAAACAAGCGCAGAATGGAGAGTTAGTTGTAAGCAAAAATAGATATGGTTCATTCTTGAGTGTTGCTTCCAACACCTTGTCATTGGTGTAAAAAGTTGAAATTTACATACTTGGTACGTGAGTAGAAGTTGTTAATACGTAAACAACCGTGTTTGATTTACTGGTTCATTGTCAGCAGTAATAGAGAAGTTGATTTGCTGGTTCATTGTAAGAACTGTGTTTTATTCTGTATACCCATTAGATGGCATGGTTTAGAAAACTGAGGTTATACAGTTTTTTCAAAAGATGGACAAAATGATACACAGTAGTTCTTGCAACTTTTCAGTGCCCAGTTAAGACCCTCAGGACATTGTTTATTTAAATTTTTATTCTATAAAGGTTTTGATATTTTAACCTACTAATGACTGTT</genome_strand>
        <mrna_strand>TTTGCAGACAACACATAGTCTTGGTTATGTATTTGGAAG.................................................................................................................................................................................................................................................................................................................................CCCTTTGTATGACGAAATCATCATATTATGCCTTGATCTTGGGGAGCTTGATGCTGCAATTGCCATAGTGGCAGATCTAGAGACTAGCGGAATCAAGGTCCCAGATGAAACCCTTGATAGAGTAATTTCTGCCAGGCAGGGTAGTGATACTCCTGTTAATGGTTCGCAATAGGGGATCTGCATATTGCAATTTTACTTGTAGGTTAGGAGGAATTTAGAATAGCATACCATAAATGTTGTAGCATATAGAGTCTCAAAACAAACAAGCGCAGAATGGAGAGTTAGTTGTAAGCAAAAATAGATATGGTTCATTCTTGAGTGTTGCTTCCAACACCTTGTCATTGGTGTAAAAAGTTGAAATTTACATACTTGGTACGTGAGTAGAAGTTGTTAATACGTAAACAACCGTGTTTGATTTACTGGTTCATTGTCAGCAGTAATAGAGAAGTTGATTTGCTGGTTCATTGTAAGAACTGTGTTTTATTCTGTATACCCATTAGATGGCATGGTTTAGAAAACTGAGGTTATACAGTTTTTTCAAAAGATGGACAAAATGATACACAGTAGTTCTTGCAACTTTTCAGTGCCCAGTTAAGACCCTCAGGACATTGTTTATTTAAATTTTTATTCTATAAAGGTTTTGATATTTTAACCTACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0044D11-3Cp1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322023" ref_strand="+" ref_description="SGN-U322023        Tomato 200607 #1 [4 ESTs aligned] genbank/nr: gi|47900689|gb|AAT39288.1| putative transposase [Solanum demissum] (evalue: 6e-17, score=91.3)">
      <seq>tattatcctactatttcatccgtattaataaatatttgtgctctttcaattcaattttctaaatataaaaaaatagatcactttagagttgcaattgaaggtatgattgaaaaatttaaaaaatatttttttcctattcctcaagtttttttaacggctactttacttcatcctgcttataaattacaaggtgtgaaaggccttgtcgacactttttatgaaactttagaagttttaccggaagaaactccagattgtgaaacgtgtaagtatagcataaaaatagaagcaaaaattttgtatgaaaaatatagaactagtgaaaattttgaaggagaagttgctcaaacttctaatgttgagattgatttgtcagttccaatttcatgttatatgcgaggtattcttggtcttaattctactaaccgtgatgattttgaagaatatcttaatcaatctttagaaaacttggaaatcaaagatggcaatgaagatttattaggatggtggagtaggcgaaccgatgcatttccaactttgagcaaaatggttcgtgatgttctatctattcaagcttcatcagttgcatcagaggctgctctcagtgcggcaagatttcaaattagttatcatagacattcattggcggaagacagtttggaaacaacagttttatttagagactggtccaatgtcggaaggaggaataacaatttgccaaagttaagtaaaaaacaagcaagttggatcaaaacactaattgaatgcagtgattatgaattagagacacaagaatttctagcaagtttgctaacaccggaggatatcaccatcgatatgatgcgacaattagataaattttaaaggagaaaacaaatatttttagattacattcgagaactaattgaaacagaacccttctagaaggtggctgcgtannatttagtactcatctaatatctgtaacaatattagttttacgtataaaacttattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0044D11-3Cp1n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0044D11.1" temp_strand="-" temp_description="C04HBa0044D11.1  CU570871.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0044D11 sequenced_by:sanger upload_account_name:uk">
        <position start="88094" stop="86492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87794" g_stop="86792" g_length="1003"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="998" r_length="998" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0044D11.1" gen_strand="-" ref_id="SGN-U322023" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>1003</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0044D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87794" e_stop="86792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATCCTACTATTTCATCCATATAAATAAATATTTGTGCTCTTACAATTCAATTTTGTACATATAAAAAAAATAGATAAATTTAGAGTTGCAATTGAAGGTA-GATTGAAAAATTTTAAAAATATTTTTTTCCTATTCCTCAAGTTTTTTTAACGGCTACTTTACTTCATCCTGCTTATAAATTACAAGGCGTGCAAGGCCTGGTTGACACTTTTTATGAAACTTTAAAAATTTTATCGGAAGAAATTCTAAATTGTCAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAACTGTTGTATGAAAAATATAGAACTACGAAAAATTTTCAAGGAGAAGTTGGTCAAACTTCTAATGTTGAGATTGATTTGTCACTTTCAATTTCA-ATTATATGCGAGGTATTCTTGGTCTTAATTCTATTAACCGTGATGATTTTGAAGATTATTTTAATCAATCTTTAGAAATATTGAAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGGCGAAGCGATGCATTTCCAACTTTGAGCAAAATGGTTTGTGATGTTCTAGCTATTCAAGCTTCATCAGTTGCATCGGAGGCTTTTTTCAGTGTGGCAAGGTTTCAAATTGGTGATCATAGACTTTCATTGGCGGAAGACAGTTTGGAAACAACAATTTTATTTAGAGACTGGTCCAATGCCGAAAATAGGAATAACAATTTGCCAAAGTTAAGTAAAAAAACAAGCAAGTTGGATCAAAACACAAATTGAATGCAGTGGTGATGAATTAGAGACGCAACAATTTCTAGCAAGTTTTCCAACACTGGAGGATATTACTATTGATATGATGCGACAATTAGAATTAAATTTTAAAGGAGAAAATAGATATTTTTAGATTACATTCGAGAACTAATTTAAACAGAACCCTTCCTAGAAGGTGGCTGAGTAAAATTAGCTACTCATCTAATATCTGTAACAAATATTAGTTTTACGTATGAGAACATATTGAA</genome_strand>
        <mrna_strand>TATTATCCTACTATTTCATCCGTATTAATAAATATTTGTGCTCTTTCAATTCAATTTTCTAAATAT-AAAAAAATAGATCACTTTAGAGTTGCAATTGAAGGTATGATTGAAAAATTTAAAAAATATTTTTTTCCTATTCCTCAAGTTTTTTTAACGGCTACTTTACTTCATCCTGCTTATAAATTACAAGGTGTGAAAGGCCTTGTCGACACTTTTTATGAAACTTTAGAAGTTTTACCGGAAGAAACTCCAGATTGTGAAACGTGTAAGTATAGCATAAAAATAGAAGCAAAAATTTTGTATGAAAAATATAGAACTAGTGAAAATTTTGAAGGAGAAGTTGCTCAAACTTCTAATGTTGAGATTGATTTGTCAGTTCCAATTTCATGTTATATGCGAGGTATTCTTGGTCTTAATTCTACTAACCGTGATGATTTTGAAGAATATCTTAATCAATCTTTAGAAAACTTGGAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGGCGAACCGATGCATTTCCAACTTTGAGCAAAATGGTTCGTGATGTTCTATCTATTCAAGCTTCATCAGTTGCATCAGAGGCTGCTCTCAGTGCGGCAAGATTTCAAATTAGTTATCATAGACATTCATTGGCGGAAGACAGTTTGGAAACAACAGTTTTATTTAGAGACTGGTCCAATGTCGGAAGGAGGAATAACAATTTGCCAAAGTTAAGT-AAAAAACAAGCAAGTTGGATCAAAACACTAATTGAATGCAGTGATTATGAATTAGAGACACAAGAATTTCTAGCAAGTTTGCTAACACCGGAGGATATCACCATCGATATGATGCGACAATTAG-A-TAAATTTTAAAGGAGAAAACAAATATTTTTAGATTACATTCGAGAACTAATTGAAACAGAACCCTT-CTAGAAGGTGGCTGCGTANNATTTAGTACTCATCTAATATCTGTAAC-AATATTAGTTTTACGTAT-AAAACTTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0044D11-3Cp1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337507" ref_strand="+" ref_description="SGN-U337507        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|18568261|gb|AAL75993.1| putative transposase [Zea mays](evalue: 1e-08, score=62.8)">
      <seq>tggaattctctttacgaaatgctttcggttgcttataaatatagaagacccatacaaatggtttttaatgccataatgctgacccattagatagaatttgtgatgaagattgggaagaaactaaagaacgattacaatttttaagacttttttatgatgctactaccatgttttcgggaatttattatcctactatttcatccgtattaataaatatttgtgctctttcaattcgattttgtaaatataaaaaaatagataaatttagagttgcaattgaaggtatgattgaaacattttaaaaatatttttttcctattcctcaagcttttttaacggctactttacttcatcctgcttataaattacaaggtgtgcaaggccttgttgacactttttataaaaagttagaaattttaccggaagaaattttaaattgtcaagcgtgtagtctagcataaaagtagaagcaaaagttttgtatgaaaaatatagaactattgaaaattttcaaggagaagttggtcaaacatctaatgttgagattgattcgtcacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0044D11-3Cp1n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0044D11.1" temp_strand="-" temp_description="C04HBa0044D11.1  CU570871.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0044D11 sequenced_by:sanger upload_account_name:uk">
        <position start="88277" stop="87115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87977" g_stop="87415" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0044D11.1" gen_strand="-" ref_id="SGN-U337507" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0044D11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87977" e_stop="87415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATTCTCTTTACGAAATGCTTTCGGTTGCTTACAAATATAGAAGACCCATACAAATGGTTTTTAATGCTTATAATGTTGATCCTTTAGATAGAATTTGTGATGAAGATTGAGAAGAAACTAAAGAACTATTACAATTTTTAAGATTTTTTTATGATGCTTCTACCATGTTTTCTGGAATTTATTATCCTACTATTTCATCCATATAAATAAATATTTGTGCTCTTACAATTCAATTTTGTACATATAAAAAAAATAGATAAATTTAGAGTTGCAATTGAAGGTA-GATTGAAAAATTTTAAAAATATTTTTTTCCTATTCCTCAAGTTTTTTTAACGGCTACTTTACTTCATCCTGCTTATAAATTACAAGGCGTGCAAGGCCTGGTTGACACTTTTTATGAAACTTTAAAAATTTTATCGGAAGAAATTCTAAATTGTCAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAACTGTTGTATGAAAAATATAGAACTACGAAAAATTTTCAAGGAGAAGTTGGTCAAACTTCTAATGTTGAGATTGATTTGTCACTTTC</genome_strand>
        <mrna_strand>TGGAATTCTCTTTACGAAATGCTTTCGGTTGCTTATAAATATAGAAGACCCATACAAATGGTTTTTAATGC-CATAATGCTGACCCATTAGATAGAATTTGTGATGAAGATTGGGAAGAAACTAAAGAACGATTACAATTTTTAAGACTTTTTTATGATGCTACTACCATGTTTTCGGGAATTTATTATCCTACTATTTCATCCGTATTAATAAATATTTGTGCTCTTTCAATTCGATTTTGTAAATAT-AAAAAAATAGATAAATTTAGAGTTGCAATTGAAGGTATGATTGAAACATTTTAAAAATATTTTTTTCCTATTCCTCAAGCTTTTTTAACGGCTACTTTACTTCATCCTGCTTATAAATTACAAGGTGTGCAAGGCCTTGTTGACACTTTTTATAAAAAGTTAGAAATTTTACCGGAAGAAATTTTAAATTGTCAAGCGTGT-AGTCTAGCATAAAAGTAGAAGCAAAAGTTTTGTATGAAAAATATAGAACTATTGAAAATTTTCAAGGAGAAGTTGGTCAAACATCTAATGTTGAGATTGATTCGTCACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8691" PGL_stop="1850"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8691" e_stop="8597"/>
            <exon e_start="2496" e_stop="1850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8691" e_stop="8597" e_length="95"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="8596" i_stop="2497" i_length="6100"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="2496" e_stop="1850" e_length="647"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8691" stop="8597"/>
              <exon start="2496" stop="1850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339900" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGTGCGTGAGCTCATGGAACTTGAGGTGAAGAGATTTTCCCTTTTCGTGCTGTTCCTTTACATCGTTTGATCCAGAACATAAATTATCACGAG : GCAAAGCACAAGCATTTGAAACCAAGGCAAAGGATATGCAGTGTGAATTAACTACAGCAAAAGACAAGCTGGAAAAATCAAGGACAGAAATCCATGGCACATGATCAGAGAGAGGTAACATCTACCCCGAATTCACCTTTATTGTCATTGGCCAAGCAAATTGAGAAGGAAAAACATGTGTTTGTCGGTTGAAAAAATGCCATTCAGAACTTGCAAAATCAAAGAGGTGTTGAAGTGATTTCAACAAAAGATTTTCCACCCGTTTCTCTTGGGAAACAACTAGAGAAGGAAAAGTGCATGTTTATGCACTGTCTGAGGGAAAATCGCGGAGCCAATGACAGCAGTGGTAGATCAGAACTTTCTTCTGTTGGGATAAGAACAGAACGTTCTTGCAGCAAAAAATCAGGAGTACTAAAAAAGCCACCATTTAGAGATGTTGGGAATTCATCACCATTATTGGTGAGGCAAAACAGTAAAGCAGTTTATCCTTTGCACAACCCTTAAAGCTAAGTAAGCCAAATGTCTCTTTGTTTTAGAATTTTTGTCATGTTATTTGTCTTCTTCAAGTGATTTTTGCTTAGTATTGATTGGTGGAAGCCTTTTGTAGAGCAAACAGTTTTGGTAGTAATAAGAGTATTTGCATTGCT</gDNA_template>
            <first_frame> L  V  R  E  L  M  E  L  E  V  K  R  F  S  L  F  V  L  F  L  Y  I  V  *  S  R  T  *  I  I  T  R :   Q  S  T  S  I  *  N  Q  G  K  G  Y  A  V  *  I  N  Y  S  K  R  Q  A  G  K  I  K  D  R  N  P  W  H  M  I  R  E  R  *  H  L  P  R  I  H  L  Y  C  H  W  P  S  K  L  R  R  K  N  M  C  L  S  V  E  K  M  P  F  R  T  C  K  I  K  E  V  L  K  *  F  Q  Q  K  I  F  H  P  F  L  L  G  N  N  *  R  R  K  S  A  C  L  C  T  V  *  G  K  I  A  E  P  M  T  A  V  V  D  Q  N  F  L  L  L  G  *  E  Q  N  V  L  A  A  K  N  Q  E  Y  *  K  S  H  H  L  E  M  L  G  I  H  H  H  Y  W  *  G  K  T  V  K  Q  F  I  L  C  T  T  L  K  A  K  *  A  K  C  L  F  V  L  E  F  L  S  C  Y  L  S  S  S  S  D  F  C  L  V  L  I  G  G  S  L  L  *  S  K  Q  F  W  *  *  *  E  Y  L  H  C  </first_frame>
            <second_frame>  *  C  V  S  S  W  N  L  R  *  R  D  F  P  F  S  C  C  S  F  T  S  F  D  P  E  H  K  L  S  R   : G  K  A  Q  A  F  E  T  K  A  K  D  M  Q  C  E  L  T  T  A  K  D  K  L  E  K  S  R  T  E  I  H  G  T  *  S  E  R  G  N  I  Y  P  E  F  T  F  I  V  I  G  Q  A  N  *  E  G  K  T  C  V  C  R  L  K  K  C  H  S  E  L  A  K  S  K  R  C  *  S  D  F  N  K  R  F  S  T  R  F  S  W  E  T  T  R  E  G  K  V  H  V  Y  A  L  S  E  G  K  S  R  S  Q  *  Q  Q  W  *  I  R  T  F  F  C  W  D  K  N  R  T  F  L  Q  Q  K  I  R  S  T  K  K  A  T  I  *  R  C  W  E  F  I  T  I  I  G  E  A  K  Q  *  S  S  L  S  F  A  Q  P  L  K  L  S  K  P  N  V  S  L  F  *  N  F  C  H  V  I  C  L  L  Q  V  I  F  A  *  Y  *  L  V  E  A  F  C  R  A  N  S  F  G  S  N  K  S  I  C  I  A </second_frame>
            <third_frame>   S  A  *  A  H  G  T  *  G  E  E  I  F  P  F  R  A  V  P  L  H  R  L  I  Q  N  I  N  Y  H  E  :  A  K  H  K  H  L  K  P  R  Q  R  I  C  S  V  N  *  L  Q  Q  K  T  S  W  K  N  Q  G  Q  K  S  M  A  H  D  Q  R  E  V  T  S  T  P  N  S  P  L  L  S  L  A  K  Q  I  E  K  E  K  H  V  F  V  G  *  K  N  A  I  Q  N  L  Q  N  Q  R  G  V  E  V  I  S  T  K  D  F  P  P  V  S  L  G  K  Q  L  E  K  E  K  C  M  F  M  H  C  L  R  E  N  R  G  A  N  D  S  S  G  R  S  E  L  S  S  V  G  I  R  T  E  R  S  C  S  K  K  S  G  V  L  K  K  P  P  F  R  D  V  G  N  S  S  P  L  L  V  R  Q  N  S  K  A  V  Y  P  L  H  N  P  *  S  *  V  S  Q  M  S  L  C  F  R  I  F  V  M  L  F  V  F  F  K  *  F  L  L  S  I  D  W  W  K  P  F  V  E  Q  T  V  L  V  V  I  R  V  F  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0044D11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2304" stop="1993"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNAIQNLQNQRGVEVISTKDFPPVSLGKQLEKEKCMFMHCLRENRGANDSSGRSELSSVGIRTERSCSKKSGVLKKPPFRDVGNSSPLLVRQNSKAVYPLHNP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12227" PGL_stop="11771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12227" e_stop="11771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="12227" e_stop="11771" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12227" stop="11771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343408" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTGTAAGCTTATGCCCCATACACATGCTTGTTCTACCCTTCTGAATTCATTGGTCAAGGATGGGTTGACTGATACTTTGTGGAAAATTTACAAAAAGATGCAAAAAATAGGGGTCCTTCCAAATATCTATATCTATAACGTGCTTATGCATGCCTGTTGTAAGTCTGGTGATGTAGAGCGGGCTGATGATTTATTGAGAGAAATGGAGTTTAAAGCTACACTGCCTGACCTTTACACTTATAACACATTGATATCATTGTACTGCAAGAAAGGCATGCATTATGAAGCTTTGTGCGTGCAGGATAGGATGGAAAGAGCAGGAGTATGTCCTGATATTGTAACCTATAATTCCTTAATTTACAGTTACTGCAGGGAAGGGAGGATGAGGGAGGCTATGAGACTTTTCAAGGAAATTAAAGGTTCTACGACTAACCTGGTTACTTACACCACATTG</gDNA_template>
            <first_frame> S  L  *  A  Y  A  P  Y  T  C  L  F  Y  P  S  E  F  I  G  Q  G  W  V  D  *  Y  F  V  E  N  L  Q  K  D  A  K  N  R  G  P  S  K  Y  L  Y  L  *  R  A  Y  A  C  L  L  *  V  W  *  C  R  A  G  *  *  F  I  E  R  N  G  V  *  S  Y  T  A  *  P  L  H  L  *  H  I  D  I  I  V  L  Q  E  R  H  A  L  *  S  F  V  R  A  G  *  D  G  K  S  R  S  M  S  *  Y  C  N  L  *  F  L  N  L  Q  L  L  Q  G  R  E  D  E  G  G  Y  E  T  F  Q  G  N  *  R  F  Y  D  *  P  G  Y  L  H  H  I  </first_frame>
            <second_frame>  V  C  K  L  M  P  H  T  H  A  C  S  T  L  L  N  S  L  V  K  D  G  L  T  D  T  L  W  K  I  Y  K  K  M  Q  K  I  G  V  L  P  N  I  Y  I  Y  N  V  L  M  H  A  C  C  K  S  G  D  V  E  R  A  D  D  L  L  R  E  M  E  F  K  A  T  L  P  D  L  Y  T  Y  N  T  L  I  S  L  Y  C  K  K  G  M  H  Y  E  A  L  C  V  Q  D  R  M  E  R  A  G  V  C  P  D  I  V  T  Y  N  S  L  I  Y  S  Y  C  R  E  G  R  M  R  E  A  M  R  L  F  K  E  I  K  G  S  T  T  N  L  V  T  Y  T  T  L </second_frame>
            <third_frame>   F  V  S  L  C  P  I  H  M  L  V  L  P  F  *  I  H  W  S  R  M  G  *  L  I  L  C  G  K  F  T  K  R  C  K  K  *  G  S  F  Q  I  S  I  S  I  T  C  L  C  M  P  V  V  S  L  V  M  *  S  G  L  M  I  Y  *  E  K  W  S  L  K  L  H  C  L  T  F  T  L  I  T  H  *  Y  H  C  T  A  R  K  A  C  I  M  K  L  C  A  C  R  I  G  W  K  E  Q  E  Y  V  L  I  L  *  P  I  I  P  *  F  T  V  T  A  G  K  G  G  *  G  R  L  *  D  F  S  R  K  L  K  V  L  R  L  T  W  L  L  T  P  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0044D11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12226" stop="11771"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCKLMPHTHACSTLLNSLVKDGLTDTLWKIYKKMQKIGVLPNIYIYNVLMHACCKSGDVERADDLLREMEFKATLPDLYTYNTLISLYCKKGMHYEALCVQDRMERAGVCPDIVTYNSLIYSYCREGRMREAMRLFKEIKGSTTNLVTYTTL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="38062" PGL_stop="38491"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38062" e_stop="38491"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="38062" e_stop="38491" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38062" stop="38491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332521" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCAGCTCAAGACGGTCGATGATGACGGTTCTATGGCCTCTGGAACGGAAAAAGTGTTAAGGCTTGTTTTCATGGAGGAATTGATGGAACGAGCTCGAAATGCTGATTCTGCAGGTGTATCTCAAGTCATTTATGATATGATTGCTGCGGGTCTCTCCCCTGGACCTCGTTCTTTCCATGGATTGGTTGTTGCTCATGTACTTCATCGTGACAATGATGGCGCTGTAACTGCCTCTCTCTCTCCTGTTTAAATGCAACATCTGCCTACTTCCTACAAGCTTAATTTTGTTTAATTTTTCTGTATTATTAGTGAAACTAGTAAAATAACCGGTACTTTACAAATATCACAAAATTTGTAAAGTATAACTTAAAAGTATATCCGGCATTTTTAATTAAGTATCACAAAATTTATAAAGTATTACTTAAAGT</gDNA_template>
            <first_frame> H  Q  L  K  T  V  D  D  D  G  S  M  A  S  G  T  E  K  V  L  R  L  V  F  M  E  E  L  M  E  R  A  R  N  A  D  S  A  G  V  S  Q  V  I  Y  D  M  I  A  A  G  L  S  P  G  P  R  S  F  H  G  L  V  V  A  H  V  L  H  R  D  N  D  G  A  V  T  A  S  L  S  P  V  *  M  Q  H  L  P  T  S  Y  K  L  N  F  V  *  F  F  C  I  I  S  E  T  S  K  I  T  G  T  L  Q  I  S  Q  N  L  *  S  I  T  *  K  Y  I  R  H  F  *  L  S  I  T  K  F  I  K  Y  Y  L  K  </first_frame>
            <second_frame>  I  S  S  R  R  S  M  M  T  V  L  W  P  L  E  R  K  K  C  *  G  L  F  S  W  R  N  *  W  N  E  L  E  M  L  I  L  Q  V  Y  L  K  S  F  M  I  *  L  L  R  V  S  P  L  D  L  V  L  S  M  D  W  L  L  L  M  Y  F  I  V  T  M  M  A  L  *  L  P  L  S  L  L  F  K  C  N  I  C  L  L  P  T  S  L  I  L  F  N  F  S  V  L  L  V  K  L  V  K  *  P  V  L  Y  K  Y  H  K  I  C  K  V  *  L  K  S  I  S  G  I  F  N  *  V  S  Q  N  L  *  S  I  T  *  S </second_frame>
            <third_frame>   S  A  Q  D  G  R  *  *  R  F  Y  G  L  W  N  G  K  S  V  K  A  C  F  H  G  G  I  D  G  T  S  S  K  C  *  F  C  R  C  I  S  S  H  L  *  Y  D  C  C  G  S  L  P  W  T  S  F  F  P  W  I  G  C  C  S  C  T  S  S  *  Q  *  W  R  C  N  C  L  S  L  S  C  L  N  A  T  S  A  Y  F  L  Q  A  *  F  C  L  I  F  L  Y  Y  *  *  N  *  *  N  N  R  Y  F  T  N  I  T  K  F  V  K  Y  N  L  K  V  Y  P  A  F  L  I  K  Y  H  K  I  Y  K  V  L  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0044D11.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38062" stop="38313"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HQLKTVDDDGSMASGTEKVLRLVFMEELMERARNADSAGVSQVIYDMIAAGLSPGPRSFHGLVVAHVLHRDNDGAVTASLSPV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="50823" PGL_stop="56815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50823" e_stop="50826"/>
            <exon e_start="50926" e_stop="51327"/>
            <exon e_start="52422" e_stop="52625"/>
            <exon e_start="56728" e_stop="56815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50823" e_stop="50826" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="50827" i_stop="50925" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50926" e_stop="51327" e_length="402"/>
          </exon>
          <intron i_serial="2" don_prob="0.932" acc_prob="1.000">
            <gDNA_intron_boundary i_start="51328" i_stop="52421" i_length="1094"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52422" e_stop="52625" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52626" i_stop="56727" i_length="4102"/>
          </intron>
          <exon e_serial="4" e_score="0.955">
            <gDNA_exon_boundary e_start="56728" e_stop="56815" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50823" stop="50826"/>
              <exon start="50926" stop="51327"/>
              <exon start="52422" stop="52625"/>
              <exon start="56728" stop="56815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333176" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAG : GTTGATGAAGAGCTTGATGAGTTGATCTCACGTATAAAGTTGCATGAAGGAAATACAGAATTCTGGAAACGCCGCTTTCTTGGGGAGGGATTAAGTGAAAATTATGGCCAACAGTCGGAAATAATAGACTTAGAACCTACTGATGTGGTAGATGATAATGATGCTGTTGATGATATCACCAAAGATGCTGAAGATGATGAGGCAGAAGATGACGAGGCACAAGATGAGGAGGAAGAAGTGGAGCAAACTGAAAGCCAACCAGAAATAAGTGACAGGAAGGACAAGGAAGTTGAAGCTGCAAAACCTCTTCAAATGATTGGAGTGCAACTGCTAAAAGATTCTGATCTAACGGCTAGCTCTTCAAAAAAATCCAGGCGAAGGCTTTCTAGAGTAGCTGCAGTG : GATGATGACGATGATGATTGGTTTCCACTAGACATTCATGAAGCATTTGTGGAGCTGAGGAAAAGGAAAGTATTTGATGTATCAGATATGTATACAATCACTGATGCTTGGGGCTGGACATGGGAAAAAGAAATCAAGAACAAAGCTCCTCGAAGATGGTCACAGGAGTGGGAAGTTGAATTGGCGATCAAAGTGATGACAAAA : GTAATAGAATTGGGTGGGACACCAACAATTGGTGATTGTGCTATGATATTGCGTTCTGCAGTACGAGCTCCTATGCCTTCTGCTTTTT</gDNA_template>
            <first_frame> R   : G  *  *  R  A  *  *  V  D  L  T  Y  K  V  A  *  R  K  Y  R  I  L  E  T  P  L  S  W  G  G  I  K  *  K  L  W  P  T  V  G  N  N  R  L  R  T  Y  *  C  G  R  *  *  *  C  C  *  *  Y  H  Q  R  C  *  R  *  *  G  R  R  *  R  G  T  R  *  G  G  R  S  G  A  N  *  K  P  T  R  N  K  *  Q  E  G  Q  G  S  *  S  C  K  T  S  S  N  D  W  S  A  T  A  K  R  F  *  S  N  G  *  L  F  K  K  I  Q  A  K  A  F  *  S  S  C  S   : G  *  *  R  *  *  L  V  S  T  R  H  S  *  S  I  C  G  A  E  E  K  E  S  I  *  C  I  R  Y  V  Y  N  H  *  C  L  G  L  D  M  G  K  R  N  Q  E  Q  S  S  S  K  M  V  T  G  V  G  S  *  I  G  D  Q  S  D  D  K   : S  N  R  I  G  W  D  T  N  N  W  *  L  C  Y  D  I  A  F  C  S  T  S  S  Y  A  F  C  F   </first_frame>
            <second_frame>  E  :  V  D  E  E  L  D  E  L  I  S  R  I  K  L  H  E  G  N  T  E  F  W  K  R  R  F  L  G  E  G  L  S  E  N  Y  G  Q  Q  S  E  I  I  D  L  E  P  T  D  V  V  D  D  N  D  A  V  D  D  I  T  K  D  A  E  D  D  E  A  E  D  D  E  A  Q  D  E  E  E  E  V  E  Q  T  E  S  Q  P  E  I  S  D  R  K  D  K  E  V  E  A  A  K  P  L  Q  M  I  G  V  Q  L  L  K  D  S  D  L  T  A  S  S  S  K  K  S  R  R  R  L  S  R  V  A  A  V  :  D  D  D  D  D  D  W  F  P  L  D  I  H  E  A  F  V  E  L  R  K  R  K  V  F  D  V  S  D  M  Y  T  I  T  D  A  W  G  W  T  W  E  K  E  I  K  N  K  A  P  R  R  W  S  Q  E  W  E  V  E  L  A  I  K  V  M  T  K  :  V  I  E  L  G  G  T  P  T  I  G  D  C  A  M  I  L  R  S  A  V  R  A  P  M  P  S  A  F  </second_frame>
            <third_frame>   R :   L  M  K  S  L  M  S  *  S  H  V  *  S  C  M  K  E  I  Q  N  S  G  N  A  A  F  L  G  R  D  *  V  K  I  M  A  N  S  R  K  *  *  T  *  N  L  L  M  W  *  M  I  M  M  L  L  M  I  S  P  K  M  L  K  M  M  R  Q  K  M  T  R  H  K  M  R  R  K  K  W  S  K  L  K  A  N  Q  K  *  V  T  G  R  T  R  K  L  K  L  Q  N  L  F  K  *  L  E  C  N  C  *  K  I  L  I  *  R  L  A  L  Q  K  N  P  G  E  G  F  L  E  *  L  Q  W :   M  M  T  M  M  I  G  F  H  *  T  F  M  K  H  L  W  S  *  G  K  G  K  Y  L  M  Y  Q  I  C  I  Q  S  L  M  L  G  A  G  H  G  K  K  K  S  R  T  K  L  L  E  D  G  H  R  S  G  K  L  N  W  R  S  K  *  *  Q  K :   *  *  N  W  V  G  H  Q  Q  L  V  I  V  L  *  Y  C  V  L  Q  Y  E  L  L  C  L  L  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0044D11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50824" stop="50826"/>
                    <exon start="50926" stop="51327"/>
                    <exon start="52422" stop="52625"/>
                    <exon start="56728" stop="56814"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVDEELDELISRIKLHEGNTEFWKRRFLGEGLSENYGQQSEIIDLEPTDVVDDNDAVDDITKDAEDDEAEDDEAQDEEEEVEQTESQPEISDRKDKEVEAAKPLQMIGVQLLKDSDLTASSSKKSRRRLSRVAAVDDDDDDWFPLDIHEAFVELRKRKVFDVSDMYTITDAWGWTWEKEIKNKAPRRWSQEWEVELAIKVMTKVIELGGTPTIGDCAMILRSAVRAPMPSAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="56823" PGL_stop="57850"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56823" e_stop="56861"/>
            <exon e_start="57183" e_stop="57850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56823" e_stop="56861" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="56862" i_stop="57182" i_length="321"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="57183" e_stop="57850" e_length="668"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56823" stop="56861"/>
              <exon start="57183" stop="57850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346829" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCAGACAACACATAGTCTTGGTTATGTATTTGGAAG : CCCTTTGTATGACGAAATCATCATATTATGCCTTGATCTTGGGGAGCTTGATGCTGCAATTGCCATAGTGGCAGATCTAGAGACTAGCGGAATCAAGGTCCCAGATGAAACCCTTGATAGAGTAATTTCTGCCAGGCAGGGTAGTGATACTCCTGTTAATGGTTCGCAATAGGGGATCTGCATATTGCAATTTTACTTGTAGGTTAGGAGGAATTTAGAATAGCATACCATAAATGTTGTAGCATATAGAGTCTCAAAACAAACAAGCGCAGAATGGAGAGTTAGTTGTAAGCAAAAATAGATATGGTTCATTCTTGAGTGTTGCTTCCAACACCTTGTCATTGGTGTAAAAAGTTGAAATTTACATACTTGGTACGTGAGTAGAAGTTGTTAATACGTAAACAACCGTGTTTGATTTACTGGTTCATTGTCAGCAGTAATAGAGAAGTTGATTTGCTGGTTCATTGTAAGAACTGTGTTTTATTCTGTATACCCATTAGATGGCATGGTTTAGAAAACTGAGGTTATACAGTTTTTTCAAAAGATGGACAAAATGATACACAGTAGTTCTTGCAACTTTTCAGTGCCCAGTTAAGACCCTCAGGACATTGTTTATTTAAATTTTTATTCTATAAAGGTTTTGATATTTTAACCTACTAATGACTGTT</gDNA_template>
            <first_frame> F  A  D  N  T  *  S  W  L  C  I  W  K  :  P  F  V  *  R  N  H  H  I  M  P  *  S  W  G  A  *  C  C  N  C  H  S  G  R  S  R  D  *  R  N  Q  G  P  R  *  N  P  *  *  S  N  F  C  Q  A  G  *  *  Y  S  C  *  W  F  A  I  G  D  L  H  I  A  I  L  L  V  G  *  E  E  F  R  I  A  Y  H  K  C  C  S  I  *  S  L  K  T  N  K  R  R  M  E  S  *  L  *  A  K  I  D  M  V  H  S  *  V  L  L  P  T  P  C  H  W  C  K  K  L  K  F  T  Y  L  V  R  E  *  K  L  L  I  R  K  Q  P  C  L  I  Y  W  F  I  V  S  S  N  R  E  V  D  L  L  V  H  C  K  N  C  V  L  F  C  I  P  I  R  W  H  G  L  E  N  *  G  Y  T  V  F  S  K  D  G  Q  N  D  T  Q  *  F  L  Q  L  F  S  A  Q  L  R  P  S  G  H  C  L  F  K  F  L  F  Y  K  G  F  D  I  L  T  Y  *  *  L   </first_frame>
            <second_frame>  L  Q  T  T  H  S  L  G  Y  V  F  G  S :   P  L  Y  D  E  I  I  I  L  C  L  D  L  G  E  L  D  A  A  I  A  I  V  A  D  L  E  T  S  G  I  K  V  P  D  E  T  L  D  R  V  I  S  A  R  Q  G  S  D  T  P  V  N  G  S  Q  *  G  I  C  I  L  Q  F  Y  L  *  V  R  R  N  L  E  *  H  T  I  N  V  V  A  Y  R  V  S  K  Q  T  S  A  E  W  R  V  S  C  K  Q  K  *  I  W  F  I  L  E  C  C  F  Q  H  L  V  I  G  V  K  S  *  N  L  H  T  W  Y  V  S  R  S  C  *  Y  V  N  N  R  V  *  F  T  G  S  L  S  A  V  I  E  K  L  I  C  W  F  I  V  R  T  V  F  Y  S  V  Y  P  L  D  G  M  V  *  K  T  E  V  I  Q  F  F  Q  K  M  D  K  M  I  H  S  S  S  C  N  F  S  V  P  S  *  D  P  Q  D  I  V  Y  L  N  F  Y  S  I  K  V  L  I  F  *  P  T  N  D  C  </second_frame>
            <third_frame>   C  R  Q  H  I  V  L  V  M  Y  L  E   : A  L  C  M  T  K  S  S  Y  Y  A  L  I  L  G  S  L  M  L  Q  L  P  *  W  Q  I  *  R  L  A  E  S  R  S  Q  M  K  P  L  I  E  *  F  L  P  G  R  V  V  I  L  L  L  M  V  R  N  R  G  S  A  Y  C  N  F  T  C  R  L  G  G  I  *  N  S  I  P  *  M  L  *  H  I  E  S  Q  N  K  Q  A  Q  N  G  E  L  V  V  S  K  N  R  Y  G  S  F  L  S  V  A  S  N  T  L  S  L  V  *  K  V  E  I  Y  I  L  G  T  *  V  E  V  V  N  T  *  T  T  V  F  D  L  L  V  H  C  Q  Q  *  *  R  S  *  F  A  G  S  L  *  E  L  C  F  I  L  Y  T  H  *  M  A  W  F  R  K  L  R  L  Y  S  F  F  K  R  W  T  K  *  Y  T  V  V  L  A  T  F  Q  C  P  V  K  T  L  R  T  L  F  I  *  I  F  I  L  *  R  F  *  Y  F  N  L  L  M  T  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0044D11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56824" stop="56861"/>
                    <exon start="57183" stop="57354"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQTTHSLGYVFGSPLYDEIIILCLDLGELDAAIAIVADLETSGIKVPDETLDRVISARQGSDTPVNGSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="87977" PGL_stop="86792"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87977" e_stop="86792"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="87977" e_stop="86792" e_length="1186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87977" stop="87415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87794" stop="86792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAATTCTCTTTACGAAATGCTTTCGGTTGCTTACAAATATAGAAGACCCATACAAATGGTTTTTAATGCTTATAATGTTGATCCTTTAGATAGAATTTGTGATGAAGATTGAGAAGAAACTAAAGAACTATTACAATTTTTAAGATTTTTTTATGATGCTTCTACCATGTTTTCTGGAATTTATTATCCTACTATTTCATCCATATAAATAAATATTTGTGCTCTTACAATTCAATTTTGTACATATAAAAAAAATAGATAAATTTAGAGTTGCAATTGAAGGTAGATTGAAAAATTTTAAAAATATTTTTTTCCTATTCCTCAAGTTTTTTTAACGGCTACTTTACTTCATCCTGCTTATAAATTACAAGGCGTGCAAGGCCTGGTTGACACTTTTTATGAAACTTTAAAAATTTTATCGGAAGAAATTCTAAATTGTCAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAACTGTTGTATGAAAAATATAGAACTACGAAAAATTTTCAAGGAGAAGTTGGTCAAACTTCTAATGTTGAGATTGATTTGTCACTTTCAATTTCAATTATATGCGAGGTATTCTTGGTCTTAATTCTATTAACCGTGATGATTTTGAAGATTATTTTAATCAATCTTTAGAAATATTGAAAATCAAAGATGGCAATGAAGATTTATTAGGATGGTGGAGTAGGCGAAGCGATGCATTTCCAACTTTGAGCAAAATGGTTTGTGATGTTCTAGCTATTCAAGCTTCATCAGTTGCATCGGAGGCTTTTTTCAGTGTGGCAAGGTTTCAAATTGGTGATCATAGACTTTCATTGGCGGAAGACAGTTTGGAAACAACAATTTTATTTAGAGACTGGTCCAATGCCGAAAATAGGAATAACAATTTGCCAAAGTTAAGTAAAAAAACAAGCAAGTTGGATCAAAACACAAATTGAATGCAGTGGTGATGAATTAGAGACGCAACAATTTCTAGCAAGTTTTCCAACACTGGAGGATATTACTATTGATATGATGCGACAATTAGAATTAAATTTTAAAGGAGAAAATAGATATTTTTAGATTACATTCGAGAACTAATTTAAACAGAACCCTTCCTAGAAGGTGGCTGAGTAAAATTAGCTACTCATCTAATATCTGTAACAAATATTAGTTTTACGTATGAGAACATATTGAA</gDNA_template>
            <first_frame> W  N  S  L  Y  E  M  L  S  V  A  Y  K  Y  R  R  P  I  Q  M  V  F  N  A  Y  N  V  D  P  L  D  R  I  C  D  E  D  *  E  E  T  K  E  L  L  Q  F  L  R  F  F  Y  D  A  S  T  M  F  S  G  I  Y  Y  P  T  I  S  S  I  *  I  N  I  C  A  L  T  I  Q  F  C  T  Y  K  K  N  R  *  I  *  S  C  N  *  R  *  I  E  K  F  *  K  Y  F  F  P  I  P  Q  V  F  L  T  A  T  L  L  H  P  A  Y  K  L  Q  G  V  Q  G  L  V  D  T  F  Y  E  T  L  K  I  L  S  E  E  I  L  N  C  Q  T  C  K  S  S  I  K  V  E  A  K  L  L  Y  E  K  Y  R  T  T  K  N  F  Q  G  E  V  G  Q  T  S  N  V  E  I  D  L  S  L  S  I  S  I  I  C  E  V  F  L  V  L  I  L  L  T  V  M  I  L  K  I  I  L  I  N  L  *  K  Y  *  K  S  K  M  A  M  K  I  Y  *  D  G  G  V  G  E  A  M  H  F  Q  L  *  A  K  W  F  V  M  F  *  L  F  K  L  H  Q  L  H  R  R  L  F  S  V  W  Q  G  F  K  L  V  I  I  D  F  H  W  R  K  T  V  W  K  Q  Q  F  Y  L  E  T  G  P  M  P  K  I  G  I  T  I  C  Q  S  *  V  K  K  Q  A  S  W  I  K  T  Q  I  E  C  S  G  D  E  L  E  T  Q  Q  F  L  A  S  F  P  T  L  E  D  I  T  I  D  M  M  R  Q  L  E  L  N  F  K  G  E  N  R  Y  F  *  I  T  F  E  N  *  F  K  Q  N  P  S  *  K  V  A  E  *  N  *  L  L  I  *  Y  L  *  Q  I  L  V  L  R  M  R  T  Y  *  </first_frame>
            <second_frame>  G  I  L  F  T  K  C  F  R  L  L  T  N  I  E  D  P  Y  K  W  F  L  M  L  I  M  L  I  L  *  I  E  F  V  M  K  I  E  K  K  L  K  N  Y  Y  N  F  *  D  F  F  M  M  L  L  P  C  F  L  E  F  I  I  L  L  F  H  P  Y  K  *  I  F  V  L  L  Q  F  N  F  V  H  I  K  K  I  D  K  F  R  V  A  I  E  G  R  L  K  N  F  K  N  I  F  F  L  F  L  K  F  F  *  R  L  L  Y  F  I  L  L  I  N  Y  K  A  C  K  A  W  L  T  L  F  M  K  L  *  K  F  Y  R  K  K  F  *  I  V  K  R  V  S  L  A  *  K  *  K  Q  N  C  C  M  K  N  I  E  L  R  K  I  F  K  E  K  L  V  K  L  L  M  L  R  L  I  C  H  F  Q  F  Q  L  Y  A  R  Y  S  W  S  *  F  Y  *  P  *  *  F  *  R  L  F  *  S  I  F  R  N  I  E  N  Q  R  W  Q  *  R  F  I  R  M  V  E  *  A  K  R  C  I  S  N  F  E  Q  N  G  L  *  C  S  S  Y  S  S  F  I  S  C  I  G  G  F  F  Q  C  G  K  V  S  N  W  *  S  *  T  F  I  G  G  R  Q  F  G  N  N  N  F  I  *  R  L  V  Q  C  R  K  *  E  *  Q  F  A  K  V  K  *  K  N  K  Q  V  G  S  K  H  K  L  N  A  V  V  M  N  *  R  R  N  N  F  *  Q  V  F  Q  H  W  R  I  L  L  L  I  *  C  D  N  *  N  *  I  L  K  E  K  I  D  I  F  R  L  H  S  R  T  N  L  N  R  T  L  P  R  R  W  L  S  K  I  S  Y  S  S  N  I  C  N  K  Y  *  F  Y  V  *  E  H  I  E </second_frame>
            <third_frame>   E  F  S  L  R  N  A  F  G  C  L  Q  I  *  K  T  H  T  N  G  F  *  C  L  *  C  *  S  F  R  *  N  L  *  *  R  L  R  R  N  *  R  T  I  T  I  F  K  I  F  L  *  C  F  Y  H  V  F  W  N  L  L  S  Y  Y  F  I  H  I  N  K  Y  L  C  S  Y  N  S  I  L  Y  I  *  K  K  *  I  N  L  E  L  Q  L  K  V  D  *  K  I  L  K  I  F  F  S  Y  S  S  S  F  F  N  G  Y  F  T  S  S  C  L  *  I  T  R  R  A  R  P  G  *  H  F  L  *  N  F  K  N  F  I  G  R  N  S  K  L  S  N  V  *  V  *  H  K  S  R  S  K  T  V  V  *  K  I  *  N  Y  E  K  F  S  R  R  S  W  S  N  F  *  C  *  D  *  F  V  T  F  N  F  N  Y  M  R  G  I  L  G  L  N  S  I  N  R  D  D  F  E  D  Y  F  N  Q  S  L  E  I  L  K  I  K  D  G  N  E  D  L  L  G  W  W  S  R  R  S  D  A  F  P  T  L  S  K  M  V  C  D  V  L  A  I  Q  A  S  S  V  A  S  E  A  F  F  S  V  A  R  F  Q  I  G  D  H  R  L  S  L  A  E  D  S  L  E  T  T  I  L  F  R  D  W  S  N  A  E  N  R  N  N  N  L  P  K  L  S  K  K  T  S  K  L  D  Q  N  T  N  *  M  Q  W  *  *  I  R  D  A  T  I  S  S  K  F  S  N  T  G  G  Y  Y  Y  *  Y  D  A  T  I  R  I  K  F  *  R  R  K  *  I  F  L  D  Y  I  R  E  L  I  *  T  E  P  F  L  E  G  G  *  V  K  L  A  T  H  L  I  S  V  T  N  I  S  F  T  Y  E  N  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0044D11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87426" stop="87031"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVTFNFNYMRGILGLNSINRDDFEDYFNQSLEILKIKDGNEDLLGWWSRRSDAFPTLSKMVCDVLAIQASSVASEAFFSVARFQIGDHRLSLAEDSLETTILFRDWSNAENRNNNLPKLSKKTSKLDQNTN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0044D11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87674" stop="87333"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYFFPIPQVFLTATLLHPAYKLQGVQGLVDTFYETLKILSEEILNCQTCKSSIKVEAKLLYEKYRTTKNFQGEVGQTSNVEIDLSLSISIICEVFLVLILLTVMILKIILINL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 22 chains have been computed
$ 
$ memory statistics:
$ 15000 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2142 bytes was the average size of a spliced alignment
$ 11568 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1928 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 24 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:32:46
-->
