<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 17:44:15"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697561" ref_strand="+" ref_description="SGN-E697561 [FA03BF04]">
      <seq>ccgaatgatttaaataattcatccctacctctggagcatcatctccgtgccttagaggagctgttggtacttgttgagcatattgataatgcaattgatctgcagaaacttggaggcttcagcatacttgtaagaatacttaatcattctgaaccagaaataaggattgctgcggcatgggttcttggcaaagccagtcaaaacaaccccattgttcagaagcaggtcctggaacttggggcattgacagtgctaatgaagatgatgaaatctcacaccacggaagaagctgtaaaagcattatttgctatttcagcactaataagaaataacatgaatggccgaagtttgttttatcaggaagctggagatacgatgcttcaggaggttcttagcaattcaaatctggatatcaggttgcataaaaagtcccctgtttcttattgctgatttagccgagagtcatctggaaaatgagaacacacctgaggtttccttttttaccaatcgattgttactgaaggccatcgttgattcaatggcatcaagcgatcttgatctaccagaaaaggccctcttacccaactaaaaacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="645" stop="2563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="942" g_stop="1038" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1039" i_stop="1572" i_length="534">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1573" g_stop="1700" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="225" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1701" i_stop="1838" i_length="138">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1839" g_stop="1997" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="384" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1998" i_stop="2076" i_length="79">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2077" g_stop="2262" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="571" r_length="187" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E697561" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="942" e_stop="1038"/>
          <exon e_start="1573" e_stop="1700"/>
          <exon e_start="1839" e_stop="1997"/>
          <exon e_start="2077" e_stop="2262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATGATTTAAATAATTCATCCCTACCTCTGGAGCATCATCTCCGTGCCTTAGAGGAGCTGTTGGTACTTGTTGAGCATATTGATAATGCAATTGGTATGTATAGTTCTCAGTACTTCTTTTATTACAGTCTTACAGATGTTTGTTTTTGCCTCTTTTGGTTTTGGTTTTATAACTTCTGACATAATATCAACATCAACAACACACCCGGTATAGCCCCACAAGTGGGGTCTGGGGAGGGTGAGGTGTACGCAGACCTTACCCTTAACTTTGTGAGGTAGAGAGACATGACACCTGACCTCATATCAACTGTAGTAATTCATTAGCATCTATATATTCCCAATAGACACGCTTCCAAGACCTAATAAGGCTATAATCAAGTCTTTAGGAGGCTCGAACTAGAAGAGCATACAACTGGCCTCTTAGGAACTATAGCACCCTTTCTTGATCTTGGTTTTTGAAGCTTCTCAATGATGCTTATGTGTACTTGTTAATGTCTTGACTCTTGAGGATTCATCAATAGTTTTTCTTTATACAGGCATCAACCGATTTCTCACCATTCCTTCATTTAAAGAAAGCATTGAATGCACATATATACTTTCTCAATGCTTACATGGTTTTTATTTTCAGATCTGCAGAAACTTGGAGGCTTCAGCATACTTGTAAGAATACTTAATCATTCTGAACCAGAAATAAGGATTGCTGCGGCATGGGTTCTTGGCAAAGCCAGTCAAAACAACCCCATTGTTCAGAAGCAGGTATTGGAGCTATGTTTTTATACAAGTTTGGTCTTTAATGATTTAGTTTCTTTGTCGCTTTCATGTGTGCAGTTCTGTGTTTATATTCTAAATTTACTGGCTATTGTATTGACGCTGTGCAATGACTTTTGCATTCAGGTCCTGGAACTTGGGGCATTGACAGTGCTAATGAAGATGATGAAATCTCACACCACGGAAGAAGCTGTAAAAGCATTATTTGCTATTTCAGCACTAATAAGAAATAACATGAATGGCCGAAGTTTGTTTTATCAGGAAGCTGGAGATACGATGCTTCAGGTGATCCCACTGAAGATTGAGTCTAGTTAGAACTCGTCTACTGCTGCAGTGTATAACTTCCTTCTGTCGTTGTACGCAGGAGGTTCTTAGCAATTCAAATCTGGATATCAGGTTGCATAAGAAGT-CACTGTTTCTTATTGCTGATTTAGCCGAGAGTCAGCTGGAAAATGAGAACACAGCTGAGGTTTCCTTTTTTAGCAATCGATTGTTACTGAAGGCCATCGTTGATTCAATGGCATCAAGCGATCTTGATCTAACAGAAAAG</genome_strand>
        <mrna_strand>CCGAATGATTTAAATAATTCATCCCTACCTCTGGAGCATCATCTCCGTGCCTTAGAGGAGCTGTTGGTACTTGTTGAGCATATTGATAATGCAATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCAGAAACTTGGAGGCTTCAGCATACTTGTAAGAATACTTAATCATTCTGAACCAGAAATAAGGATTGCTGCGGCATGGGTTCTTGGCAAAGCCAGTCAAAACAACCCCATTGTTCAGAAGCAG..........................................................................................................................................GTCCTGGAACTTGGGGCATTGACAGTGCTAATGAAGATGATGAAATCTCACACCACGGAAGAAGCTGTAAAAGCATTATTTGCTATTTCAGCACTAATAAGAAATAACATGAATGGCCGAAGTTTGTTTTATCAGGAAGCTGGAGATACGATGCTTCAG...............................................................................GAGGTTCTTAGCAATTCAAATCTGGATATCAGGTTGCATAAAAAGTCCCCTGTTTCTTATTGCTGATTTAGCCGAGAGTCATCTGGAAAATGAGAACACACCTGAGGTTTCCTTTTTTACCAATCGATTGTTACTGAAGGCCATCGTTGATTCAATGGCATCAAGCGATCTTGATCTACCAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369152" ref_strand="+" ref_description="SGN-E369152 [TUS-23-A18]">
      <seq>ttgttcagaagcaggtcctggaacttggggcattgacagtgctaatgaagatgatgaaatctcacaccacggaagaagctgtaaaagcattatttgctatttcagcactaataagaaataacatgaatggccgaagtttgttttatcaggaagctggagatacgatgcttcaggaggttcttagcaattcaaatctggatatcaggttgcataagaagtcactgtttcttattgctgatttagccgagagtcagctggaaaatgagaacacagctgaggtttccttttttagcaatcgattgttactgaaggccatcgttgattcaatggcatcaagcgatcttgatctaacagaaaaggccctttacgcaactaaaaacttactactacttagatcgactgatgttcaactcttcaaggacttctgtaaattgaacgaggtacttgagaggacgaggcaacagttgaatgatcttagtgaagaatacgcaatggatgtggagagtcttcgaaaagaagttaacctgaccttccttcaaaagctgaatgaggttacacaatctgcattatgatgacagtctctggcttgatctgggttttgaacgttatactgcttgcattctacgcgcggaagtaaccaagtggatcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="1527" stop="3526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1687" g_stop="1700" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1701" i_stop="1838" i_length="138">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1839" g_stop="1997" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="173" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1998" i_stop="2076" i_length="79">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2077" g_stop="2262" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="359" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2263" i_stop="2859" i_length="597">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2860" g_stop="3051" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="551" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3052" i_stop="3127" i_length="76">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3128" g_stop="3226" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="650" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E369152" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1687" e_stop="1700"/>
          <exon e_start="1839" e_stop="1997"/>
          <exon e_start="2077" e_stop="2262"/>
          <exon e_start="2860" e_stop="3051"/>
          <exon e_start="3128" e_stop="3226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCAGAAGCAGGTATTGGAGCTATGTTTTTATACAAGTTTGGTCTTTAATGATTTAGTTTCTTTGTCGCTTTCATGTGTGCAGTTCTGTGTTTATATTCTAAATTTACTGGCTATTGTATTGACGCTGTGCAATGACTTTTGCATTCAGGTCCTGGAACTTGGGGCATTGACAGTGCTAATGAAGATGATGAAATCTCACACCACGGAAGAAGCTGTAAAAGCATTATTTGCTATTTCAGCACTAATAAGAAATAACATGAATGGCCGAAGTTTGTTTTATCAGGAAGCTGGAGATACGATGCTTCAGGTGATCCCACTGAAGATTGAGTCTAGTTAGAACTCGTCTACTGCTGCAGTGTATAACTTCCTTCTGTCGTTGTACGCAGGAGGTTCTTAGCAATTCAAATCTGGATATCAGGTTGCATAAGAAGTCACTGTTTCTTATTGCTGATTTAGCCGAGAGTCAGCTGGAAAATGAGAACACAGCTGAGGTTTCCTTTTTTAGCAATCGATTGTTACTGAAGGCCATCGTTGATTCAATGGCATCAAGCGATCTTGATCTAACAGAAAAGGTTTGTGTAGTCTTTAGTGTGAATGAACATTAATTTCTAAAGTATCTTAGTAGTCTAAATTTCATTTGCACGATCCCTTAGGTTTTCAAATATTAGAAATGATTCTCATCCTCAGCAATTTTGGCCTGACCTTTGTGAAGAGCAAGTGTCGATGGTCTTTTTACGTAAAATCCACAGTTGCATCCGTCATGAGTACACCCGTATACCTCCAAAGTTTAAAGTGTCGCTCTGTTGGATTATCCTTTTTCTTGACTAAATCGCCTACTTTCATTTTTTGTAAGTGGCTATATCAGTCGGTTGTACTGCATTTTAATGGTGGAGTGTTGGTTAGATGGGAGAAGTAATTGGTAGAGCGATGTCTGATTAAAAAATTGATTGACTTGGTTTGGCAAGTCTTTCGAACAACATATAGATTTACGACTTTATAAGGTATATGGGCTCATAAACTTGTTTTATTTGGACTATCCCGCGTATCTTTCATTACATTTCCGTCTTCAATACATTGAACACAGCCTCTGTAATACAAAATATTGCCTTGCATATGTTGGTGACATCTTTAAAAAGTCTGTTATAGGCTTGACATTGCTTTAACTGCAGGCCCTTTACGCAACTAAAAACTTACTACTACTTAGATCGACTGATGTTCAACTCTTCAAGGACTTCTGTAAATTGAACGAGGTACTTGAGAGGACGAGGCAACAGTTGAATGATCTTAGTGAAGAATACGCAATGGATGTGGAGAGTCTTCGAAAAGAAGTTAACCTGACCTTCCTTCAAAAGCTGAATGAGGTAACAGAACCATTAACGTAGATTTCTTTTCATTTGAACTTGAACTTGGATCCTTTGCTAAAACTCGAAATGACAGGTTACACAATCTGCATTATGATGACAGTCTCTGGCTTGATCTGGGTTTTGAACGTTATACTGCTTGCATTCTACGCGCGGAAGTAACCAAGTGGATCGC</genome_strand>
        <mrna_strand>TTGTTCAGAAGCAG..........................................................................................................................................GTCCTGGAACTTGGGGCATTGACAGTGCTAATGAAGATGATGAAATCTCACACCACGGAAGAAGCTGTAAAAGCATTATTTGCTATTTCAGCACTAATAAGAAATAACATGAATGGCCGAAGTTTGTTTTATCAGGAAGCTGGAGATACGATGCTTCAG...............................................................................GAGGTTCTTAGCAATTCAAATCTGGATATCAGGTTGCATAAGAAGTCACTGTTTCTTATTGCTGATTTAGCCGAGAGTCAGCTGGAAAATGAGAACACAGCTGAGGTTTCCTTTTTTAGCAATCGATTGTTACTGAAGGCCATCGTTGATTCAATGGCATCAAGCGATCTTGATCTAACAGAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTTACGCAACTAAAAACTTACTACTACTTAGATCGACTGATGTTCAACTCTTCAAGGACTTCTGTAAATTGAACGAGGTACTTGAGAGGACGAGGCAACAGTTGAATGATCTTAGTGAAGAATACGCAATGGATGTGGAGAGTCTTCGAAAAGAAGTTAACCTGACCTTCCTTCAAAAGCTGAATGAG............................................................................GTTACACAATCTGCATTATGATGACAGTCTCTGGCTTGATCTGGGTTTTGAACGTTATACTGCTTGCATTCTACGCGCGGAAGTAACCAAGTGGATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240614" ref_strand="+" ref_description="SGN-E240614 [cLED-21-P1]">
      <seq>ttgttcagatgcaggtcctggaacttggggcattgacagtgctcatgnggatgatgaaatctcacaccacggaagaagctgtaaaagcattatttgctatttcagcactaataagaaataacatgaatggccgaagtttgttttatcaggaagctggagatacgatgcttcaggaggttcttagcaattcaaatctggatatcaggttgcataagaagacactgtttcttattgctgatttagccgagagtcagctggaaaatgagaacacagctgaggtttccttttttagcaatcgattggtactgaaggccatcgttgattcaatggcatcaagcgatcttgatctaacagaaaaggccctttacgcaactaaaaacttactactacttagatcgactgatgttcaactcttcaaggacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="1527" stop="3225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1687" g_stop="1700" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1701" i_stop="1838" i_length="138">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1839" g_stop="1997" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="173" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1998" i_stop="2076" i_length="79">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2077" g_stop="2262" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="359" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2263" i_stop="2859" i_length="597">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2860" g_stop="2925" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="425" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E240614" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1687" e_stop="1700"/>
          <exon e_start="1839" e_stop="1997"/>
          <exon e_start="2077" e_stop="2262"/>
          <exon e_start="2860" e_stop="2925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCAGAAGCAGGTATTGGAGCTATGTTTTTATACAAGTTTGGTCTTTAATGATTTAGTTTCTTTGTCGCTTTCATGTGTGCAGTTCTGTGTTTATATTCTAAATTTACTGGCTATTGTATTGACGCTGTGCAATGACTTTTGCATTCAGGTCCTGGAACTTGGGGCATTGACAGTGCTAATGAAGATGATGAAATCTCACACCACGGAAGAAGCTGTAAAAGCATTATTTGCTATTTCAGCACTAATAAGAAATAACATGAATGGCCGAAGTTTGTTTTATCAGGAAGCTGGAGATACGATGCTTCAGGTGATCCCACTGAAGATTGAGTCTAGTTAGAACTCGTCTACTGCTGCAGTGTATAACTTCCTTCTGTCGTTGTACGCAGGAGGTTCTTAGCAATTCAAATCTGGATATCAGGTTGCATAAGAAGTCACTGTTTCTTATTGCTGATTTAGCCGAGAGTCAGCTGGAAAATGAGAACACAGCTGAGGTTTCCTTTTTTAGCAATCGATTGTTACTGAAGGCCATCGTTGATTCAATGGCATCAAGCGATCTTGATCTAACAGAAAAGGTTTGTGTAGTCTTTAGTGTGAATGAACATTAATTTCTAAAGTATCTTAGTAGTCTAAATTTCATTTGCACGATCCCTTAGGTTTTCAAATATTAGAAATGATTCTCATCCTCAGCAATTTTGGCCTGACCTTTGTGAAGAGCAAGTGTCGATGGTCTTTTTACGTAAAATCCACAGTTGCATCCGTCATGAGTACACCCGTATACCTCCAAAGTTTAAAGTGTCGCTCTGTTGGATTATCCTTTTTCTTGACTAAATCGCCTACTTTCATTTTTTGTAAGTGGCTATATCAGTCGGTTGTACTGCATTTTAATGGTGGAGTGTTGGTTAGATGGGAGAAGTAATTGGTAGAGCGATGTCTGATTAAAAAATTGATTGACTTGGTTTGGCAAGTCTTTCGAACAACATATAGATTTACGACTTTATAAGGTATATGGGCTCATAAACTTGTTTTATTTGGACTATCCCGCGTATCTTTCATTACATTTCCGTCTTCAATACATTGAACACAGCCTCTGTAATACAAAATATTGCCTTGCATATGTTGGTGACATCTTTAAAAAGTCTGTTATAGGCTTGACATTGCTTTAACTGCAGGCCCTTTACGCAACTAAAAACTTACTACTACTTAGATCGACTGATGTTCAACTCTTCAAGGACTTC</genome_strand>
        <mrna_strand>TTGTTCAGATGCAG..........................................................................................................................................GTCCTGGAACTTGGGGCATTGACAGTGCTCATGNGGATGATGAAATCTCACACCACGGAAGAAGCTGTAAAAGCATTATTTGCTATTTCAGCACTAATAAGAAATAACATGAATGGCCGAAGTTTGTTTTATCAGGAAGCTGGAGATACGATGCTTCAG...............................................................................GAGGTTCTTAGCAATTCAAATCTGGATATCAGGTTGCATAAGAAGACACTGTTTCTTATTGCTGATTTAGCCGAGAGTCAGCTGGAAAATGAGAACACAGCTGAGGTTTCCTTTTTTAGCAATCGATTGGTACTGAAGGCCATCGTTGATTCAATGGCATCAAGCGATCTTGATCTAACAGAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTTACGCAACTAAAAACTTACTACTACTTAGATCGACTGATGTTCAACTCTTCAAGGACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240958" ref_strand="+" ref_description="SGN-E240958 [cLED-24-O16]">
      <seq>ttgttcagaagcaggtcctggaacttggggcattgacagtgctaatgaagatgatgaaatctcacaccacggaagaagctgtaaaagcattatttgctatttcagcactaataagaaataacatgaatggccgaagtttgttttatcaggaagctggagatacgatgcttcaggaggttcttagcaattcaaatctggatatcaggttgcataagaagtcactgtttcttattgctgatttagccgagagtcagctggaaaatgagaacacagctgaggtttccttttttagcaatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="1527" stop="2502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1687" g_stop="1700" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1701" i_stop="1838" i_length="138">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1839" g_stop="1997" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="173" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1998" i_stop="2076" i_length="79">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2077" g_stop="2202" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="299" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E240958" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1687" e_stop="1700"/>
          <exon e_start="1839" e_stop="1997"/>
          <exon e_start="2077" e_stop="2202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCAGAAGCAGGTATTGGAGCTATGTTTTTATACAAGTTTGGTCTTTAATGATTTAGTTTCTTTGTCGCTTTCATGTGTGCAGTTCTGTGTTTATATTCTAAATTTACTGGCTATTGTATTGACGCTGTGCAATGACTTTTGCATTCAGGTCCTGGAACTTGGGGCATTGACAGTGCTAATGAAGATGATGAAATCTCACACCACGGAAGAAGCTGTAAAAGCATTATTTGCTATTTCAGCACTAATAAGAAATAACATGAATGGCCGAAGTTTGTTTTATCAGGAAGCTGGAGATACGATGCTTCAGGTGATCCCACTGAAGATTGAGTCTAGTTAGAACTCGTCTACTGCTGCAGTGTATAACTTCCTTCTGTCGTTGTACGCAGGAGGTTCTTAGCAATTCAAATCTGGATATCAGGTTGCATAAGAAGTCACTGTTTCTTATTGCTGATTTAGCCGAGAGTCAGCTGGAAAATGAGAACACAGCTGAGGTTTCCTTTTTTAGCAATCGA</genome_strand>
        <mrna_strand>TTGTTCAGAAGCAG..........................................................................................................................................GTCCTGGAACTTGGGGCATTGACAGTGCTAATGAAGATGATGAAATCTCACACCACGGAAGAAGCTGTAAAAGCATTATTTGCTATTTCAGCACTAATAAGAAATAACATGAATGGCCGAAGTTTGTTTTATCAGGAAGCTGGAGATACGATGCTTCAG...............................................................................GAGGTTCTTAGCAATTCAAATCTGGATATCAGGTTGCATAAGAAGTCACTGTTTCTTATTGCTGATTTAGCCGAGAGTCAGCTGGAAAATGAGAACACAGCTGAGGTTTCCTTTTTTAGCAATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313377" ref_strand="+" ref_description="SGN-E313377 [cTOA-13-C13]">
      <seq>taatgaagatgatgaaatctcacaccacggaagaagctgtaaaagcattatttgctatttcagcactaataagaaataacatgaatggccgaagtttgttttatcaggaagctggagatacgatgcttcaggaggttcttagcaattcaaatctggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="1567" stop="2404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1867" g_stop="1997" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1998" i_stop="2076" i_length="79">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2077" g_stop="2104" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="159" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E313377" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>159</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1867" e_stop="1997"/>
          <exon e_start="2077" e_stop="2104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAAGATGATGAAATCTCACACCACGGAAGAAGCTGTAAAAGCATTATTTGCTATTTCAGCACTAATAAGAAATAACATGAATGGCCGAAGTTTGTTTTATCAGGAAGCTGGAGATACGATGCTTCAGGTGATCCCACTGAAGATTGAGTCTAGTTAGAACTCGTCTACTGCTGCAGTGTATAACTTCCTTCTGTCGTTGTACGCAGGAGGTTCTTAGCAATTCAAATCTGGATA</genome_strand>
        <mrna_strand>TAATGAAGATGATGAAATCTCACACCACGGAAGAAGCTGTAAAAGCATTATTTGCTATTTCAGCACTAATAAGAAATAACATGAATGGCCGAAGTTTGTTTTATCAGGAAGCTGGAGATACGATGCTTCAG...............................................................................GAGGTTCTTAGCAATTCAAATCTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200547" ref_strand="+" ref_description="SGN-E200547 [cLEB-8-D24]">
      <seq>gcacgaggtcagctggaaaatgagaacacagctgaggtttccttttttagcaatcgattgttactgaaggccatcgttgattcaatggcatcaagcgatcttgatctaacagaaaaggccctttacgcaactaaaaacttactactacttagatcgactgatgttcaactcttcaaggacttctgtaaattgaacgaggtacttgagaggacgaggcaacagttgaatgatcttagtgaagaatacgcaatggatgtggagagtcttcgaaaagaagttaacctgaccttccttcaaaagctgaatgaggttacacaatctgcattatgatgacagtctctggcttgatctgggttttgaacgttatactgcttgcattctacgcgcggaagtaaccaagtggatcgcgatatcttcatcatcccacgcctttgttcatctggacgtggactcgaaattggtacatcatcatctgcttaggacaacactaatgtgaaatagacaacattatgagctaacgacgactcgcgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="1846" stop="3652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2146" g_stop="2262" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2263" i_stop="2859" i_length="597">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2860" g_stop="3051" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="309" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3052" i_stop="3127" i_length="76">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3128" g_stop="3352" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="534" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E200547" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2146" e_stop="2262"/>
          <exon e_start="2860" e_stop="3051"/>
          <exon e_start="3128" e_stop="3352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GC-CGAGAGTCAGCTGGAAAATGAGAACACAGCTGAGGTTTCCTTTTTTAGCAATCGATTGTTACTGAAGGCCATCGTTGATTCAATGGCATCAAGCGATCTTGATCTAACAGAAAAGGTTTGTGTAGTCTTTAGTGTGAATGAACATTAATTTCTAAAGTATCTTAGTAGTCTAAATTTCATTTGCACGATCCCTTAGGTTTTCAAATATTAGAAATGATTCTCATCCTCAGCAATTTTGGCCTGACCTTTGTGAAGAGCAAGTGTCGATGGTCTTTTTACGTAAAATCCACAGTTGCATCCGTCATGAGTACACCCGTATACCTCCAAAGTTTAAAGTGTCGCTCTGTTGGATTATCCTTTTTCTTGACTAAATCGCCTACTTTCATTTTTTGTAAGTGGCTATATCAGTCGGTTGTACTGCATTTTAATGGTGGAGTGTTGGTTAGATGGGAGAAGTAATTGGTAGAGCGATGTCTGATTAAAAAATTGATTGACTTGGTTTGGCAAGTCTTTCGAACAACATATAGATTTACGACTTTATAAGGTATATGGGCTCATAAACTTGTTTTATTTGGACTATCCCGCGTATCTTTCATTACATTTCCGTCTTCAATACATTGAACACAGCCTCTGTAATACAAAATATTGCCTTGCATATGTTGGTGACATCTTTAAAAAGTCTGTTATAGGCTTGACATTGCTTTAACTGCAGGCCCTTTACGCAACTAAAAACTTACTACTACTTAGATCGACTGATGTTCAACTCTTCAAGGACTTCTGTAAATTGAACGAGGTACTTGAGAGGACGAGGCAACAGTTGAATGATCTTAGTGAAGAATACGCAATGGATGTGGAGAGTCTTCGAAAAGAAGTTAACCTGACCTTCCTTCAAAAGCTGAATGAGGTAACAGAACCATTAACGTAGATTTCTTTTCATTTGAACTTGAACTTGGATCCTTTGCTAAAACTCGAAATGACAGGTTACACAATCTGCATTATGATGACAGTCTCTGGCTTGATCTGGGTTTTGAACGTTATACTGCTTGCATTCTACGCGCGGAAGTAACCAAGTGGATCGCGATATCTTCATCATCCCACGCCTTTGTTCATCTGGACGTGGACTCGAAATTGGTACATCATCATCTGCTTAGGACAACACTAATGTGAAATAGACAACATTATGAGCTAACGACGACTCGCGCTGA</genome_strand>
        <mrna_strand>GCACGAG-GTCAGCTGGAAAATGAGAACACAGCTGAGGTTTCCTTTTTTAGCAATCGATTGTTACTGAAGGCCATCGTTGATTCAATGGCATCAAGCGATCTTGATCTAACAGAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTTACGCAACTAAAAACTTACTACTACTTAGATCGACTGATGTTCAACTCTTCAAGGACTTCTGTAAATTGAACGAGGTACTTGAGAGGACGAGGCAACAGTTGAATGATCTTAGTGAAGAATACGCAATGGATGTGGAGAGTCTTCGAAAAGAAGTTAACCTGACCTTCCTTCAAAAGCTGAATGAG............................................................................GTTACACAATCTGCATTATGATGACAGTCTCTGGCTTGATCTGGGTTTTGAACGTTATACTGCTTGCATTCTACGCGCGGAAGTAACCAAGTGGATCGCGATATCTTCATCATCCCACGCCTTTGTTCATCTGGACGTGGACTCGAAATTGGTACATCATCATCTGCTTAGGACAACACTAATGTGAAATAGACAACATTATGAGCTAACGACGACTCGCGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351151" ref_strand="+" ref_description="SGN-E351151 [cTOS-6-A13]">
      <seq>taaattgaacgaggtacttgagaggacgaggcaacagttgaatgatcttagtgaagaatacgcaatggatgtggagagtcttcgaaaagaagttaacctgaccttccttcaaaagctgaatgaggttacacaatctgcattatgatgacagtctctggcttgatctgggttttgaacgttatactgcttgcattctacgcgcggaagtaaccaagtggatcgcgatatcttcatcatcccacgcctttgttcatctggacgtggactcgaaattggtacatcatcatctgcttaggacaacactaatgtgaaatagacaacattatgagctaacgacgactcgcgctgattttataagtgcctctactatttaagttatagccaattttgtcgaatatttaacttttatcaatcttgcaaaattgatagcaatgtaatgtatgtgatgagaaaatcaattttgtggaaagaccaatattttctgcttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="2628" stop="3798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2928" g_stop="3051" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3052" i_stop="3127" i_length="76">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3128" g_stop="3501" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="498" r_length="374" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E351151" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2928" e_stop="3051"/>
          <exon e_start="3128" e_stop="3501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTGAACGAGGTACTTGAGAGGACGAGGCAACAGTTGAATGATCTTAGTGAAGAATACGCAATGGATGTGGAGAGTCTTCGAAAAGAAGTTAACCTGACCTTCCTTCAAAAGCTGAATGAGGTAACAGAACCATTAACGTAGATTTCTTTTCATTTGAACTTGAACTTGGATCCTTTGCTAAAACTCGAAATGACAGGTTACACAATCTGCATTATGATGACAGTCTCTGGCTTGATCTGGGTTTTGAACGTTATACTGCTTGCATTCTACGCGCGGAAGTAACCAAGTGGATCGCGATATCTTCATCATCCCACGCCTTTGTTCATCTGGACGTGGACTCGAAATTGGTACATCATCATCTGCTTAGGACAACACTAATGTGAAATAGACAACATTATGAGCTAACGACGACTCGCGCTGATTTTATAAGTGCCTCTACTATTTAAGTTATAGCCAATTTTGTCGAATATTTAACTTTTATCAATCTTGCAAAATTGATAGCAATGTAATGTATGTGATGAGAAAATCAATTTTGTGGAAAGACCAATATTTTCTGCTTCTACAGAATTT</genome_strand>
        <mrna_strand>TAAATTGAACGAGGTACTTGAGAGGACGAGGCAACAGTTGAATGATCTTAGTGAAGAATACGCAATGGATGTGGAGAGTCTTCGAAAAGAAGTTAACCTGACCTTCCTTCAAAAGCTGAATGAG............................................................................GTTACACAATCTGCATTATGATGACAGTCTCTGGCTTGATCTGGGTTTTGAACGTTATACTGCTTGCATTCTACGCGCGGAAGTAACCAAGTGGATCGCGATATCTTCATCATCCCACGCCTTTGTTCATCTGGACGTGGACTCGAAATTGGTACATCATCATCTGCTTAGGACAACACTAATGTGAAATAGACAACATTATGAGCTAACGACGACTCGCGCTGATTTTATAAGTGCCTCTACTATTTAAGTTATAGCCAATTTTGTCGAATATTTAACTTTTATCAATCTTGCAAAATTGATAGCAATGTAATGTATGTGATGAGAAAATCAATTTTGTGGAAAGACCAATATTTTCTGCTTCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369151" ref_strand="+" ref_description="SGN-E369151 [TUS-23-A18](-)">
      <seq>ctttgttcatctggacgtggactcaaaattggtacatcatcatctgcttaggacaacactaatgtgaaatagacaacattatgagctaacgacgactcgcgctgattttataagtgcctctactatttaagttatagccaattttgtcgaatatttaacttttatcaatcttgcaaaattgatagcaatgtaatgtatgtgatgagaaaatcaattttgtggaaagaccaatattttctgcttctacagaatttgtatcaacctttaagaaaatattcaattttctacgaatttattatgtatctatttcacataaaaaataaaaaaaaaaagggaaattgcgcgtattagtagaaatataatagtcaatttagtgaacataactatagtttgttattattataatttgctgacctatttttagatacaattatgcggattatttttttagtttttgtataattagcatgtttgtagaatttagagtttgtataatatattttgtataatttttatacaatgcaattttatataatatgtacaactgtttaccctttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="2948" stop="4106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3248" g_stop="3803" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="580"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E369151" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3248" e_stop="3803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTCATCTGGACGTGGACTCGAAATTGGTACATCATCATCTGCTTAGGACAACACTAATGTGAAATAGACAACATTATGAGCTAACGACGACTCGCGCTGATTTTATAAGTGCCTCTACTATTTAAGTTATAGCCAATTTTGTCGAATATTTAACTTTTATCAATCTTGCAAAATTGATAGCAATGTAATGTATGTGATGAGAAAATCAATTTTGTGGAAAGACCAATATTTTCTGCTTCTACAGAATTTGTATCAACCTTTAAGAGAATATTCAATTTTCTACGAATTTATTATGTATCTATTTCACATAAAAAATAAAAAAAAAAAGGGAAATTGCGCGTATTAGTAGAAATATAATAGTCAATTTAGTGAACATAACTATAGTTTGTTATTATTATAATTTGCTGACCTATTTTTAGATACAATTATGCGGATTA-TTTTTTAGTTTTTGTATAATTAGCATGTTTGTAGAATTTAGAGTTTGTATAATATATTTTGTATAATTTTTATACAATGCAATTTTATATAATATGTACAACTGTTTACACTTT</genome_strand>
        <mrna_strand>CTTTGTTCATCTGGACGTGGACTCAAAATTGGTACATCATCATCTGCTTAGGACAACACTAATGTGAAATAGACAACATTATGAGCTAACGACGACTCGCGCTGATTTTATAAGTGCCTCTACTATTTAAGTTATAGCCAATTTTGTCGAATATTTAACTTTTATCAATCTTGCAAAATTGATAGCAATGTAATGTATGTGATGAGAAAATCAATTTTGTGGAAAGACCAATATTTTCTGCTTCTACAGAATTTGTATCAACCTTTAAGAAAATATTCAATTTTCTACGAATTTATTATGTATCTATTTCACATAAAAAATAAAAAAAAAAAGGGAAATTGCGCGTATTAGTAGAAATATAATAGTCAATTTAGTGAACATAACTATAGTTTGTTATTATTATAATTTGCTGACCTATTTTTAGATACAATTATGCGGATTATTTTTTTAGTTTTTGTATAATTAGCATGTTTGTAGAATTTAGAGTTTGTATAATATATTTTGTATAATTTTTATACAATGCAATTTTATATAATATGTACAACTGTTTACCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472474" ref_strand="+" ref_description="SGN-E472474 [cSTB-28-J4]">
      <seq>caaattgaatttcttcaaaatcacttgcagaaatggcttccaaatctctaaaacctccaaaacaaccaccaaaaaaccctaaaaaacaatggtcactcaacgatttcgagatcggaaaacccctcggaaaaggcaaattcggccgtgtatacctcgcccgcgaagttaagagtggatttatagtggccttgaaagtcatattcaaggagcaaatagagaaatacaggctgcatcatcaacttaggagggaaatggagattcaaaccagccttcgccatcccaatgtactgaggctatatggttggtttcacgatgaggagcggatttacatgattttggagtatgctcatggcggtgagctgtatagggagctaaggaagaccggtcgcctgtctgagaaacaagctgccatagtatgtcacatcctattgcttgctctactcatataagatttgaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="4031" stop="5302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4314" g_stop="4472" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="170" r_length="158" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4473" i_stop="4710" i_length="238">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4711" g_stop="5002" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="462" r_length="292" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E472474" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4314" e_stop="4472"/>
          <exon e_start="4711" e_stop="5002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAAAACACCAACAAAAAATGGCTTCCAAATCTCTAAAACCTCCAAAACAACCACCAAAAAACCCTAAAAAACAATGGTCCCTGAACGATTTCGAGATCGGAAAACCCCTCGGAAAAGGCAAATTCGGCCGTGTATACCTCGCCCGCGAAGTTAAGGTAATTTGAATGAGTAGATAAATGTATGTTTTTCTACGTTCTCGTTGTTTCCCGATATGCGCATTAGACTCAGGAATTAATATGAGTTCGGACGAATCTGATAGTTTTTGCACAAACAATGTAAGTATTGTGTTGGTATTAGATGTAGAATTCAGAAAGTTGAAATTTTAGTTTTGTTTGTTTATTGGATTATTTTATTAGAAAAAAAATCATGAAAGATGAACTTGAATTTTTGCAGAGTGGATTTATAGTGGCGTTGAAGGTGATATTCAAGGAGCAGATAGAGAAATACAGGTTGCATCATCAGCTTAAGAGGGAAATGGAGATTCAAACAAGTCTTCATCATCCCAATGTGTTGAGGCTATATGGTTGGTTTCATGATGAGGAGCGGATTTACTTGATTTTGGAGTATGCTCATCGCGGTGAGCTGTATAGGGAGCTAAGGAAGATAGGTCGTCTGTCTGAGAAACAAGCTGCCATAGTATGTTACATCCTATTGCTTGCTCTCCTCATATAAGATATGAAACAAA</genome_strand>
        <mrna_strand>CTTCAAAATCACTTGC-AGAAATGGCTTCCAAATCTCTAAAACCTCCAAAACAACCACCAAAAAACCCTAAAAAACAATGGTCACTCAACGATTTCGAGATCGGAAAACCCCTCGGAAAAGGCAAATTCGGCCGTGTATACCTCGCCCGCGAAGTTAAG..............................................................................................................................................................................................................................................AGTGGATTTATAGTGGCCTTGAAAGTCATATTCAAGGAGCAAATAGAGAAATACAGGCTGCATCATCAACTTAGGAGGGAAATGGAGATTCAAACCAGCCTTCGCCATCCCAATGTACTGAGGCTATATGGTTGGTTTCACGATGAGGAGCGGATTTACATGATTTTGGAGTATGCTCATGGCGGTGAGCTGTATAGGGAGCTAAGGAAGACCGGTCGCCTGTCTGAGAAACAAGCTGCCATAGTATGTCACATCCTATTGCTTGCTCTACTCATATAAGATTTGAAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346299" ref_strand="+" ref_description="SGN-E346299 [cTOF-23-B6]">
      <seq>aaggtgatattcaaggagcagatagagaaatacaggttgcatcatcagcttaagagggaaatggagattcaaacaagtcttcatcatcccaatgtgttgaggctatatggttggtttcatgatgaggagcggatttacttgattttggagtatgctcatcgcggtgagctgtatagggagctaaggaagataggtcgtctgtctgagaaacaagctgccatatatattgcaagtctcactcaagcactggcgtactgtcatgagaagcatgttattcacagggacataaagccggaaaacctgttacttgatcatgagggccgcttaaagattgcagactttgggtggtctgtacaatctagaagcaagagacatacaatgtgcggaactctggactatctggcaccagaaatggtggagaacaaagctcatgattattcagttgacaattggaccctggggatcctttgctatgaatttctatatggtgtgcctccatttgaggccgagagacagactgacacattcagaagaattatgaaggtagacctcagcttcccttcacacttgatgtatctgctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="4432" stop="7432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4732" g_stop="4953" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4954" i_stop="5590" i_length="637">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5591" g_stop="5686" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="318" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5687" i_stop="6790" i_length="1104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6791" g_stop="7005" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="533" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7006" i_stop="7080" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7081" g_stop="7132" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="584" r_length="51" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E346299" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4732" e_stop="4953"/>
          <exon e_start="5591" e_stop="5686"/>
          <exon e_start="6791" e_stop="7005"/>
          <exon e_start="7081" e_stop="7132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTGATATTCAAGGAGCAGATAGAGAAATACAGGTTGCATCATCAGCTTAAGAGGGAAATGGAGATTCAAACAAGTCTTCATCATCCCAATGTGTTGAGGCTATATGGTTGGTTTCATGATGAGGAGCGGATTTACTTGATTTTGGAGTATGCTCATCGCGGTGAGCTGTATAGGGAGCTAAGGAAGATAGGTCGTCTGTCTGAGAAACAAGCTGCCATAGTATGTTACATCCTATTGCTTGCTCTCCTCATATAAGATATGAAACAAAAGCATTTAGTTCATTTGCAGTATTCGGATTTGTTTATGTAATTTGTTATGAGCATATATTCATTGATTCTAGTGTTAGAGAGCTCCATATTATTGAATGAAACGGGTACAAATGAAGCGAAATGGATTATGGGATTCTCATTGCTGTCTCAACTAGCTTGGGATTGAGGTGTAGTTTTGTTGTTTAGTTGTGAGCTTTTAAATTGTTTCAACTGATGGCCTCTTCCCCCGAACCCAAACAAAGAGGATAGAGATTCAGTTCTTTCGTTATCTATCACTATATGACATGTAAGGTATGGTCTACTTGAAAGATGGTGCAATTTTGGGTTGCATTTGTATCAGTTGGTGTTTTTTCATTTTCATAGTGTCTTGTTTATGTTATTTCTTCTGTGCTTAATGTTGAACAATGAACTAATGTTATCGTTACTATTGTCCTTCTTATGACTCCAGTGTTTATCTGAAAATTGTTTATGGAATAGTCGAACACATAATTACAATTATGTAGAAATCATCATTTAGTGTTCAACTTCTTTCCTGTTGCTTTATGTTTGTTCTTTGACTTTTGATACTTCGGTTGTTTCTTTTGTAGTATATTGCAAGTCTCACTCAAGCACTGGCGTACTGTCATGAGAAGCATGTTATTCACAGGGACATAAAGCCGGAAAACCTGTTACTTGATCATGAGGTAAGATCTTGATAACTTACTGTCTTTGTTTGCCACGTCTGCTAAGTTTTATTAGCACCATCTCCTAAAAAGAAGAAAACACACACTATATATATGGCTAATTTGTAAGGTTCATAACACTATGGATCAACTCGAAGGTTCCAGTTGCTTTGAAATTTAGCTTTCCTCTTTAGTCCCGACTCTCCTGAGGGTTGAACCTTGAGAGATCATTGACCTAACCAGATATTGGTAATATCCTTCATAAATATCTTTCCTGTGAAATTCAATCAGCTTCTGTTTTTCTTCACGGAAAAGGAAAAAGCAGTAGAGCTTGTTGGAGTGTTGACACTTCTAGTTGGTGCAAAGCTTTGACACCGTAGTTGCCTTGGCGACTTTAACTGCTGCTTGCTGATTGAATCAGCCTATTGAACAACCTTCAAGAAGCTCTTCTCTGATCAGTCTTATTTCTAGTATGTCATTGCCTATCTTTTGTTGTTGCATTTTCTGTTTAACTTATAAAGGCTGGAAATGCCGCTTTATAATCTTTCTATTGTTATATAGAATTTCTTTCGCTTTATAATCTTTCTATTGTTATATAGAATTTCTTTCGATTTCACCTCATGTCGCTGTATAACCAGGCTCAAGTAAAATAGCGACCCTCTGATTCTTTATTAATTTTGGCTAAAGTTGTGAATGTGGGACATTAAGTTTTACATATGATACGTCATTCTGACGATCACCAGAGCTTGCACTATCTATCTCATTTTGTTTCAACATAAATTAACCTGGTCAAGAAAAAAATGTCAACTGTAAAATTCACTACCTTCAAAGCTAGTATATTTAAAATAATTTGCATGTCTTTCAACCATTATTTCATAGGATAATGACAATTGAGATCAAGGGAGTATATCTGTTGATGTATCCTAATAAAACCATATATAACAGAGCAGTCAGGATGGTTCTATTAAGATAATGTATGTAATGTTAGCGCTTAGGTTTTTCATGGGCGTCCCAATTAGAGCTGGATTTGATTGTGCAGCAACTGCAGCTGAAACCAACCAGGGAATTGTTAACGTGCTGCATCGTAAGGGTAAAATATTAATTAGATTATCACATGAAATGCAGGGCCGCTTAAAGATTGCAGACTTTGGGTGGTCTGTACAATCTAGAAGCAAGAGACATACAATGTGCGGAACTCTGGACTATCTGGCACCAGAAATGGTGGAGAACAAAGCTCATGATTATTCAGTTGACAATTGGACCCTGGGGATCCTTTGCTATGAATTTCTATATGGTGTGCCTCCATTTGAGGCCGAGAGACAGACTGACACATTCAGAAGGTAACAATTCTTCTGCTTTTTTTCATACTATTACTTGGAAAATCGAGATGTACTACTAACTCAAGAGTATTATAGAATTATGAAGGTAGACCTCAGCTTCCCTTCAACACTTGATGTATCTGCTGAA</genome_strand>
        <mrna_strand>AAGGTGATATTCAAGGAGCAGATAGAGAAATACAGGTTGCATCATCAGCTTAAGAGGGAAATGGAGATTCAAACAAGTCTTCATCATCCCAATGTGTTGAGGCTATATGGTTGGTTTCATGATGAGGAGCGGATTTACTTGATTTTGGAGTATGCTCATCGCGGTGAGCTGTATAGGGAGCTAAGGAAGATAGGTCGTCTGTCTGAGAAACAAGCTGCCATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTGCAAGTCTCACTCAAGCACTGGCGTACTGTCATGAGAAGCATGTTATTCACAGGGACATAAAGCCGGAAAACCTGTTACTTGATCATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGCTTAAAGATTGCAGACTTTGGGTGGTCTGTACAATCTAGAAGCAAGAGACATACAATGTGCGGAACTCTGGACTATCTGGCACCAGAAATGGTGGAGAACAAAGCTCATGATTATTCAGTTGACAATTGGACCCTGGGGATCCTTTGCTATGAATTTCTATATGGTGTGCCTCCATTTGAGGCCGAGAGACAGACTGACACATTCAGAAG...........................................................................AATTATGAAGGTAGACCTCAGCTTCCCTTC-ACACTTGATGTATCTGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415203" ref_strand="+" ref_description="SGN-E415203 [STM-20-N24]">
      <seq>cagccgtataccggggttcagctgataattatgtgggcactacttgtggtggaaggacatcacttgcatttaggcttatacctcagagcaatgcaatactggattgttctccgattacagctgctggtcatgttattcctcatagctacgtgccaatatctgtaagccagtttatggatgacctttcagccgaggaagacatgctttgtagcaatactgataatgcttatgttgcccgagacaatctaaataaggaaccatcactcagaagtgttctttcagatcccttgtctggcgcattccttgaagatgctatgtttgtttcatgcggacattcctttggtggtctcatgctgaaaagggttattgatatggcaagatgtaccctctgcaatgctgaaattgagcgtggttccttaattcctaaccacgtgctgagaactgcggctgcagcagtgaagcatgaggatgaccgaagacttttccacaatgcagctcttagaaagcgtcgaaaagaagtgggagacattagggaaaatggtgagcttccttctgaaaatggaccccataaaggtgttcagtatccattctcagtgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="15104" stop="8554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14804" g_stop="14750" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14749" i_stop="14668" i_length="82">
            <donor d_prob="0.345" d_score="1.00"/>
            <acceptor a_prob="0.730" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14667" g_stop="14493" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="230" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14492" i_stop="12333" i_length="2160">
            <donor d_prob="0.544" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12332" g_stop="12271" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="292" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12270" i_stop="10562" i_length="1709">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10561" g_stop="10480" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="374" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10479" i_stop="10233" i_length="247">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.301" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10232" g_stop="10175" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="432" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10174" i_stop="9972" i_length="203">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9971" g_stop="9871" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="533" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9870" i_stop="8921" i_length="950">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8920" g_stop="8854" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="600" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E415203" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14804" e_stop="14750"/>
          <exon e_start="14667" e_stop="14493"/>
          <exon e_start="12332" e_stop="12271"/>
          <exon e_start="10561" e_stop="10480"/>
          <exon e_start="10232" e_stop="10175"/>
          <exon e_start="9971" e_stop="9871"/>
          <exon e_start="8920" e_stop="8854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCGTATACCGGGGTTCAGCTGATAATTATGTGGGCACTACTTGTGGTGGAAGGTAGACATGGCTTGTTGAGCTTTTAAGTGGCTTACTAAATTCAGTTTACTCAAATACTGAGCTGTTCAGCTACATCTTGTAGGACATCACTTGCATTTAGGCTTATACCTCAGAGCAATGCAATACTGGATTGTTCTCCGATTACAGCTGCTGGTCATGTTATTCCTCATAGCTACGTGCCAATATCTGTAAGCCAGTTTATGGATGACCTTTCAGCCGAGGAAGACATGCTTTGTAGCAATACTGATAATGCTTATGTAAGTACTATTTCTTTTCAGATGGTCAAATGGTGTTTCTCTTTGCACAGGCAAAAGCCTTTTTCTGCAAAGTTTTAATGCTATGGGGTCTGTTTTGGTTTTGCGCAGAGTAAAAACTTCAATTTAGGTGTGAGTGCTTCATAATCAGATTATGTTCCTTTTTCTCTCAAGTCTTATCAACTCTTTTTACCGATGAGTACAAAAATAGTTCGTTAATATGGCATAACCAGCACTAAGATGGTGTTAGTCTATTAACTTACACCAGATGACTAGAATCTAAGGTACTTATATTTTAGCGACTGTACAGGTGCACCGCTGCTTCCTTTCTCTCTGTAGCACCCAGCATACCTAAAGAATGATCGTTCAACGCTTTTTCATCCCTTTCCTGATCTTGTAACCATTCACAATTACTACTATGCTTCAGTCCCAAAGTTGAGATCTTATATATGAATCCTCACTATTCCATTTATGCTCAATTCATGTATCGTCATGCGAAATAAAAGTAAAAGTGAATAATTTAATATATGTAAATAAGTATAAAATAATAATAGAAGTCCTCTAACGGGACTAAAACTTATTCCCTACTATTAAATATCACCTATTGGAATATTTTTCCTCCATTGTGCCTTATCTTTACCAAAGTCTGCATTAATTATAATGAAATTGTTCATGTGATTTTAGGTCTATCTCCTCTCCTTTTAACACTTTTAGTCAAGCATAGTTTCACAGTTGCAAATAAGTGCATCTGTAGGTTGACACAAGACATGACCAACAATCTCAAGCTACCTTCTCTCACTTTGTCCTCAATATGTGTTACTTGAACTTTCTGACACGTGGTCAATTTAGTCTTATCTAATTTTGTATGACTGCACATCCATCTTAGTATCCACATATCTGCAACACTTTTCTTGTGGATATGTTGGATTTAGCGGTCCAACATTTATCATATAGCATTGTGGTTCATAATTGTTTTGTAGAACTTATCTTTGACCTTGTAAGCATCTTTCCATCACATAACACCCTGGTAACATTTCCATTTTGACTATCTTGTTCCGATACCATTTTGGGGACCTCTTGTATCTCCTATGACTGTTCTCATGCTAGTGACGACTCCTTCATACATGTCCTTTATGATATCTATATTATTATTCTGAATTCCTTTTTTCCCCATCACCACCAAAGGACTTCTCATGGACACTATCATATGCTTTCTCTAGGACCAATGGATACAATATGTGGAGTTTTCTCCCTTTCGCAATAAAATTTCATCATTCTTCTTACCAAGAATATAGCCTCCATTATCTACCAGGCATAAATCCAAATTGGTTCTCTGTTTCTTGTCATATTCCTAAGTCTACGCTTTTCCATTCTTTCTCGCAAAAGAGTTTTATCTTATGACTCATTAGTTTAATGCCATGAAGTCGCACATCTCGTAACCATTCCATTCCTGCAAATTTTCATTGACAGTGCTAGGTGACCCGATATATCTCAAAGAGAAAAGAAACAACTGTCTTCAACTTCATTTCAACGAAGCATCTAGTGTTAATCATGCTTTATGTTTAATCATCTAACATAAAACATGAGACCACCTAGGGGATTTGGTCCCCTACCTCGTGTTTTCTTCTCTTTCCACATCTCTCTTGCTGCGTGCTGAGCTTGAGATTCAACTCCCGTACCACAATGTAATTTTACTTGGACAAATATTTTCTTGGAATATGGACGTTCTTTGTTTACCTTGAATGATCAATTCCACATGAACTGGAGCAGAAATAACTTCATTTGAATGCAGCATGAATGTAGACATGTCATTCTAGGAGAAGAGGAGACATCTCATTCTAGGTCAAGATCAATATGTGACTCGAGACAATCTTAAAAAGGGAAATATCAATGTGGAACTTGTCTGCTTCTTTACATACTGGACCTGGAATTACCTTCTCTTTTGATACTTTTGAACCTTTAGTTGGATACACTCCTCTCCTTACATAACACGTCTTTTGTAATTGCACAAAAAGTGAAAACTGTTCTTGTGGTGGAAACAAAAACACTTGACGTTAGCATGTCTTTCCTATATTGGTGGTTGACACCATAATAGTTGGACCATGGATATTTTGGTCTGAATACAACATAAGAAGACATCTCATTCTTGCCCTGGATCTGCAGGTGGCCCGAGACAATGTAAATAAGGAACCATCACTCAGAAGTGTTCTTTCAGATCCCTTATCGTAAGTTTTAATTTGTCAAATGGACTTTTCTCCTTCTTTTCTGGTTAAATATAGCAGCATATTAGTTGCAAGAAAAAAAGAAGACAATATAGCAGCATATTTACTGCATGAGTATATTAAACTGATAAATTGACTGCATTAAAATTTACTGCATGAGTATATTAAACATCTTATACTTTCTTAGTCTCTAAATTGACATCCCTTACTTCCATTTATAGCAAGAAGTTTAAGAAACGCTGGCCTAGTTTGACTAAAGGTCTTGCAGAAGTTTTCAAGATTATATCTTCTTAAAAAATTTCCTAGCAAAATAATGCAGATAACATTTTCTTCTTAATGAAATGTAGTAAGTTTGGTGATGAACAGTATCAAGAGGGTACCGTTATAGAACAAAAGCAGGCCCTTGTTCTCCACTAAAGACTTAGAGTCTTGCAAGTACATAATCTCTGCACTTATAGAAAAGCATATCTCTGTCATTCTATTACAATGTTACCCTTGCAAAAGAAATATATGGAAGCCAATTCCTCTATGTTCCATATACAGTCTGTCTGAGAGGAATTAGGTATGTTTGAAGGAAAAAATGCTAGGCAACTGTAAAACTAGCAGAGACATAACATGACCATATAGATGCCTAAAACTTGCAAACAGAACCACTGAAATGATCTAAAGAATTGGTATAAGGGATGTTTGAAGGAAAAAATGCCAGGCAACTGTAAAACTAACAGAGACGTAACATTATAGATGACTTATACTTGCAAAACAGAACTGCTGAGAAGGTCTAAAGAGTTGGTATTCACTCTACACATGGTATTCGTACAAGAAATGTGGTTTGGTTACAGGAGCTATGAGATATTGAACGAACGCGTGCGACTCTTTTGGAACTGAGCTAGCTCTGGTTTCTCATGCTGGAAATATTTACAGAGACTTATTGCTACCCTCAATCGTGTTGAGTTAATAACTAAGTATAATAAAAGTCTAAAAACTTGCATGCGGCTCAAACCCCAACCTCCAACTGAGGAAAAACAGTAAGAGAGAAGTCAAAACCTCTACCACTGTTAGTTGAGTTGTTGTGAGTTCCCTCTGATCTGAAAAACGTTGAATATCAGTAGAGCCAAAAAGAGGCCTTTGGCTAAATATAAGAAACAATTGAAAGCTGCATCTTGAGCCGTGAAGCTTATTTTTAATGCATGTACATCACTTAGATTAGAGCTATTACATGTTGCAGAATGTGCAGAAGTGAGGGGTCTCATAACAGTTGAGAGATTGCAAAAAGCTTTCAGATGATTTGGGGTGCTATTTTGCAAATTTTTAGCAGCTTCACGCATTTTGAGGCTGAGAGGAACTCGAGCATTAAAAGCAACTAAAGCATTAAAAGAAACACATCAATCCCGTGCTGAGACTTAACTAGAATAGAATCAAGAAGTGGATAAAGAATTTGGAACTTGCATCTGTGTTTTCTTATGGAAAGGTAGGAAAAGCTATATTTCCTACTCTTCCTTGGCCCTTAAACTAGTTAAATAGTGCATGACAAGTCTCTTAATTGAACTTGATAGTCGTAGTATTTACCCCCCACCCTCCCCATTCCAAGCTTGTATCTCTATTTTTTTCTAGCTCCGTTCATGATTCATATTAGCATATGCATGGGTTATTAATGCACAGTTTCTTGCATCTGGAAAATATTTACTTTACCGTTACAATGTGAAACATTGCAGTGGCGCATTCCTTGAAGATGCTATGTTTGTTTCATGTGGACATTCCTTTGGTGGTCTCATGCTGAAAAGGGTTATTGATATGGTAGGAGTTATTGTCTTCTTCTCAAGCCATTTTATCTGTTCTCATAAGAATATGAAGATTATAAATTGGTATGAGCTACCACAGACTTTGACCAAACCATACATGGGATATTGGTGCAACTGCTTCATGGACAAAACAACTCTTGCTTGAGCATCATTTTTCTTTTTGGTTTCATGTTGTTGTCTTCATTTATTGGGTTAGTGATGAATGAGTCAAGAACATAATCACGTTCATCTCATCATGACAGGCAAGATGTATCCTCTGCAATGCTGAAATTGAGCGTGGTTCCTTAATTCCTAACCACGGTTAGCTCCAGTTCATTTATTTCTCTCTCTCTCTCATTTATTTATACATTATATACATATCTTCTCCTTCAGACTTCCATTTTTTTTCTATAAAAAATTGTTTCCCAACACACTCTAATTAATTCTCTTCTGGTACCTCTTACTCAATTTTAAATGATTTTTCTCATTAATTCTGCCATCTGTTTTACACTATTCATCTTCAGTACTGAGAACTGCGGCTGCAGCAGTGAAGCATGAGGATGACCGAAGACTTTTCCACAATGCAGCTCTTAGAAAGCGTCGAAAAGAAGTGGGAGACATTAGGGTAAGCTTTGATTTTCCCCATTTTGCTGCAGACTTGTCCATCCAAACTGCATAGTAGCTCATTGTCTTCAGTTTTCTGGTAAAAGGAACTATCTTAATCTGATTTTAACTTTTATGCAATGACATGACAATTAACATGTCCTAGTCAATTTTTGGATAATTTTCCGTCTCAAGCTATGTTGCTCGGATATGGGTGTGGGCACCCAATACGGTAGCAGATATAAAGGTTGGATTTATCATTACCTAAATTGTAGGATTCAGGAATATGGATAGGATTATGGGTGGTTTTTAAGGAAGAACCAATGTAAAACATATACAAGTATATATTTGACAGCTAATTGAAGTTATCAAATTATCATCTTTTTTGTGTAATTTTCTTTTTATAAGTTAACTCGTATAATAACAAATTGCTCTTGGCTATAGAATAGTCCAAAGTACCCAAGCTAGTTTGACCAAACCTAGCATGGATTGGACACCCACATCCAAATCGCGTCGGATTGAAAGTCGACGCGGAAAGGTTTTTGAAGGATTTGTTAGATCTGAACTGCACAGGAATCATATATTTGGAAATTACCTAGTGAAAATGAAAATGTTGATTATGTACCTTAACATGGTATAATGGTTTATGTTCTTTTCTCATTTGTATATTGTTCTTTTGATAGTGAAGTCAAAACCTTGTTGAATGATTTCCCTTTGGTAGATTTGGCAGATTGCATAGTTTGTTTAGGGAAAGCAAAGGCTTATCCAGTTTTTGCTATCCTTTTCTTGCCTTGGAAAAAGTTTGGATTTAGTGATATCTATGTTCATCCGTATTTAGGCTCTGTTTTAGATTAGGGCAAATCGCAAATTTCTTGCTTCATTGACCTATAAATGTTTGAAATTTGAAATTATCTTTGTTGAATATACCTGTGAGTGATTCTTCGAAAATCCTCATTACTTTAATTCGTCCAGGAGAATGGTGAGCTTCCTTCTGAAAATGGACCGCATAAAGGTGTTCAGTATCCATTCTCAGTGAATG</genome_strand>
        <mrna_strand>CAGCCGTATACCGGGGTTCAGCTGATAATTATGTGGGCACTACTTGTGGTGGAAG..................................................................................GACATCACTTGCATTTAGGCTTATACCTCAGAGCAATGCAATACTGGATTGTTCTCCGATTACAGCTGCTGGTCATGTTATTCCTCATAGCTACGTGCCAATATCTGTAAGCCAGTTTATGGATGACCTTTCAGCCGAGGAAGACATGCTTTGTAGCAATACTGATAATGCTTAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCCGAGACAATCTAAATAAGGAACCATCACTCAGAAGTGTTCTTTCAGATCCCTTGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGCATTCCTTGAAGATGCTATGTTTGTTTCATGCGGACATTCCTTTGGTGGTCTCATGCTGAAAAGGGTTATTGATATG.......................................................................................................................................................................................................................................................GCAAGATGTACCCTCTGCAATGCTGAAATTGAGCGTGGTTCCTTAATTCCTAACCACG...........................................................................................................................................................................................................TGCTGAGAACTGCGGCTGCAGCAGTGAAGCATGAGGATGACCGAAGACTTTTCCACAATGCAGCTCTTAGAAAGCGTCGAAAAGAAGTGGGAGACATTAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGGTGAGCTTCCTTCTGAAAATGGACCCCATAAAGGTGTTCAGTATCCATTCTCAGTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475308" ref_strand="+" ref_description="SGN-E475308 [cSTB-39-L4]">
      <seq>ggttcagctgataattatgtgggcactacttgtggtggaaggacatcacttgcatttaggcttatacctcatagcaatgcaatactggattgttctccgattacagctgctggtcatgttattcctcatagctacgtgccaatatctgtaagccagtttatggatgacctttcagccgaggaagacatgctttgtagcaatactgataatgcttatgttgcccgagacaatctaaataaggaaccatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="15090" stop="11999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14790" g_stop="14750" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14749" i_stop="14668" i_length="82">
            <donor d_prob="0.345" d_score="1.00"/>
            <acceptor a_prob="0.730" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14667" g_stop="14493" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="216" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14492" i_stop="12333" i_length="2160">
            <donor d_prob="0.544" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12332" g_stop="12299" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="250" r_length="34" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E475308" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14790" e_stop="14750"/>
          <exon e_start="14667" e_stop="14493"/>
          <exon e_start="12332" e_stop="12299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCAGCTGATAATTATGTGGGCACTACTTGTGGTGGAAGGTAGACATGGCTTGTTGAGCTTTTAAGTGGCTTACTAAATTCAGTTTACTCAAATACTGAGCTGTTCAGCTACATCTTGTAGGACATCACTTGCATTTAGGCTTATACCTCAGAGCAATGCAATACTGGATTGTTCTCCGATTACAGCTGCTGGTCATGTTATTCCTCATAGCTACGTGCCAATATCTGTAAGCCAGTTTATGGATGACCTTTCAGCCGAGGAAGACATGCTTTGTAGCAATACTGATAATGCTTATGTAAGTACTATTTCTTTTCAGATGGTCAAATGGTGTTTCTCTTTGCACAGGCAAAAGCCTTTTTCTGCAAAGTTTTAATGCTATGGGGTCTGTTTTGGTTTTGCGCAGAGTAAAAACTTCAATTTAGGTGTGAGTGCTTCATAATCAGATTATGTTCCTTTTTCTCTCAAGTCTTATCAACTCTTTTTACCGATGAGTACAAAAATAGTTCGTTAATATGGCATAACCAGCACTAAGATGGTGTTAGTCTATTAACTTACACCAGATGACTAGAATCTAAGGTACTTATATTTTAGCGACTGTACAGGTGCACCGCTGCTTCCTTTCTCTCTGTAGCACCCAGCATACCTAAAGAATGATCGTTCAACGCTTTTTCATCCCTTTCCTGATCTTGTAACCATTCACAATTACTACTATGCTTCAGTCCCAAAGTTGAGATCTTATATATGAATCCTCACTATTCCATTTATGCTCAATTCATGTATCGTCATGCGAAATAAAAGTAAAAGTGAATAATTTAATATATGTAAATAAGTATAAAATAATAATAGAAGTCCTCTAACGGGACTAAAACTTATTCCCTACTATTAAATATCACCTATTGGAATATTTTTCCTCCATTGTGCCTTATCTTTACCAAAGTCTGCATTAATTATAATGAAATTGTTCATGTGATTTTAGGTCTATCTCCTCTCCTTTTAACACTTTTAGTCAAGCATAGTTTCACAGTTGCAAATAAGTGCATCTGTAGGTTGACACAAGACATGACCAACAATCTCAAGCTACCTTCTCTCACTTTGTCCTCAATATGTGTTACTTGAACTTTCTGACACGTGGTCAATTTAGTCTTATCTAATTTTGTATGACTGCACATCCATCTTAGTATCCACATATCTGCAACACTTTTCTTGTGGATATGTTGGATTTAGCGGTCCAACATTTATCATATAGCATTGTGGTTCATAATTGTTTTGTAGAACTTATCTTTGACCTTGTAAGCATCTTTCCATCACATAACACCCTGGTAACATTTCCATTTTGACTATCTTGTTCCGATACCATTTTGGGGACCTCTTGTATCTCCTATGACTGTTCTCATGCTAGTGACGACTCCTTCATACATGTCCTTTATGATATCTATATTATTATTCTGAATTCCTTTTTTCCCCATCACCACCAAAGGACTTCTCATGGACACTATCATATGCTTTCTCTAGGACCAATGGATACAATATGTGGAGTTTTCTCCCTTTCGCAATAAAATTTCATCATTCTTCTTACCAAGAATATAGCCTCCATTATCTACCAGGCATAAATCCAAATTGGTTCTCTGTTTCTTGTCATATTCCTAAGTCTACGCTTTTCCATTCTTTCTCGCAAAAGAGTTTTATCTTATGACTCATTAGTTTAATGCCATGAAGTCGCACATCTCGTAACCATTCCATTCCTGCAAATTTTCATTGACAGTGCTAGGTGACCCGATATATCTCAAAGAGAAAAGAAACAACTGTCTTCAACTTCATTTCAACGAAGCATCTAGTGTTAATCATGCTTTATGTTTAATCATCTAACATAAAACATGAGACCACCTAGGGGATTTGGTCCCCTACCTCGTGTTTTCTTCTCTTTCCACATCTCTCTTGCTGCGTGCTGAGCTTGAGATTCAACTCCCGTACCACAATGTAATTTTACTTGGACAAATATTTTCTTGGAATATGGACGTTCTTTGTTTACCTTGAATGATCAATTCCACATGAACTGGAGCAGAAATAACTTCATTTGAATGCAGCATGAATGTAGACATGTCATTCTAGGAGAAGAGGAGACATCTCATTCTAGGTCAAGATCAATATGTGACTCGAGACAATCTTAAAAAGGGAAATATCAATGTGGAACTTGTCTGCTTCTTTACATACTGGACCTGGAATTACCTTCTCTTTTGATACTTTTGAACCTTTAGTTGGATACACTCCTCTCCTTACATAACACGTCTTTTGTAATTGCACAAAAAGTGAAAACTGTTCTTGTGGTGGAAACAAAAACACTTGACGTTAGCATGTCTTTCCTATATTGGTGGTTGACACCATAATAGTTGGACCATGGATATTTTGGTCTGAATACAACATAAGAAGACATCTCATTCTTGCCCTGGATCTGCAGGTGGCCCGAGACAATGTAAATAAGGAACCATCAC</genome_strand>
        <mrna_strand>GGTTCAGCTGATAATTATGTGGGCACTACTTGTGGTGGAAG..................................................................................GACATCACTTGCATTTAGGCTTATACCTCATAGCAATGCAATACTGGATTGTTCTCCGATTACAGCTGCTGGTCATGTTATTCCTCATAGCTACGTGCCAATATCTGTAAGCCAGTTTATGGATGACCTTTCAGCCGAGGAAGACATGCTTTGTAGCAATACTGATAATGCTTAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCCGAGACAATCTAAATAAGGAACCATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600535" ref_strand="+" ref_description="SGN-E600535 [53549]">
      <seq>ttctcccccatgcatgactgaagttttccgctgcatgggaagggcagctcgtgctgctttatgtgcaattgcaaggcatcttcgattgcgaagcgatgctctgtagtgtcttcaatcacttgcttgatgataatccgctgcccgttaatgaggcctcttcatctgttgttgttgcaaccttctccaataccacctctcaaaatgggaaaggagctattggaggagggaagctagttacaaatggtgaagtagagaaggggctgttgacactagtttcatctgatgctcctggtcttcaggtttgtgatcccaatggtcgttggtatctagcagatagtggcttgactcctggggatttactattgcttactgggaaagctctcagccatgctactgccggtcttcgtcctgcagccgtataccggggttcagctgataattatgtgggcactacttgtggtggaaggacatcacttgcatttaggcttatacctcagagcaatgcaaatactggattgttctccgattacagctgctggtcatgttattcctcatagctacgttccaatatctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="15770" stop="14260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15470" g_stop="15375" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15374" i_stop="15307" i_length="68">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15306" g_stop="15104" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="299" r_length="203" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15103" i_stop="14917" i_length="187">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14916" g_stop="14750" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="466" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14749" i_stop="14668" i_length="82">
            <donor d_prob="0.345" d_score="1.00"/>
            <acceptor a_prob="0.730" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14667" g_stop="14560" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="575" r_length="109" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E600535" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15470" e_stop="15375"/>
          <exon e_start="15306" e_stop="15104"/>
          <exon e_start="14916" e_stop="14750"/>
          <exon e_start="14667" e_stop="14560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCCCCATGCATGACTGAAGTTTTCCGCTGCATGGGAAGGGCAGCTCGTGCTGCTTTATGTGCAATTGCAAGGCATCTTCGATTGCGAAGCGAGTAAGAACTTCTGTCATGGCTTGATCATATCATTCAGACTCTTAAATGCATTCTGACCAAAGACATAGTGCTCTGTAGTGTCTTCAATAACTTGCTTGATGACAATCCGCTGCCCGTTAATGAGGCCTCTTCATCTGTTGTTGTTGCAACCTTCTCCAATACCACCTCTCAAAATGGGAAAGGAGCTATTGGAGGAGGGAAGCTAGTTACAAATGGTGAAGTAGAGAAAGGGCTGTTGACACTAGTTTCATCTGATGCTCCTGGTCTTCAGGTATTCCTGTTGATTTCTTTCAGATTTTTCATTTAAGTTTCAGATTGTGCATAGTTTCCAAATAATATGTTACAACTCCCTCCCCCCCCCCCCCCCTCTCTCTCTATGTATATATATTTTTAAAAAGCTCCTTTCTTGATCCTGTGCCATCAGTCATTTTCCTTGCTTGTTTCTTTTTTATCCCTAGGTTTGTGATCCCAATGGTCATTGGTATCTAGCAGATAGTGGCTTGACTCCTGGGGATTTACTATTGCTTACTGGGAAAGCTCTCAGCCATGCTACTGCCGGTCTTCGTCCTGCAGCCGTATACCGGGGTTCAGCTGATAATTATGTGGGCACTACTTGTGGTGGAAGGTAGACATGGCTTGTTGAGCTTTTAAGTGGCTTACTAAATTCAGTTTACTCAAATACTGAGCTGTTCAGCTACATCTTGTAGGACATCACTTGCATTTAGGCTTATACCTCAGAGCAATGC-AATACTGGATTGTTCTCCGATTACAGCTGCTGGTCATGTTATTCCTCATAGCTACGTGCCAATATCTGT</genome_strand>
        <mrna_strand>TTCTCCCCCATGCATGACTGAAGTTTTCCGCTGCATGGGAAGGGCAGCTCGTGCTGCTTTATGTGCAATTGCAAGGCATCTTCGATTGCGAAGCGA....................................................................TGCTCTGTAGTGTCTTCAATCACTTGCTTGATGATAATCCGCTGCCCGTTAATGAGGCCTCTTCATCTGTTGTTGTTGCAACCTTCTCCAATACCACCTCTCAAAATGGGAAAGGAGCTATTGGAGGAGGGAAGCTAGTTACAAATGGTGAAGTAGAGAAGGGGCTGTTGACACTAGTTTCATCTGATGCTCCTGGTCTTCAG...........................................................................................................................................................................................GTTTGTGATCCCAATGGTCGTTGGTATCTAGCAGATAGTGGCTTGACTCCTGGGGATTTACTATTGCTTACTGGGAAAGCTCTCAGCCATGCTACTGCCGGTCTTCGTCCTGCAGCCGTATACCGGGGTTCAGCTGATAATTATGTGGGCACTACTTGTGGTGGAAG..................................................................................GACATCACTTGCATTTAGGCTTATACCTCAGAGCAATGCAAATACTGGATTGTTCTCCGATTACAGCTGCTGGTCATGTTATTCCTCATAGCTACGTTCCAATATCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368974" ref_strand="+" ref_description="SGN-E368974 [TUS-25-N5](-)">
      <seq>cgcacgttcagcaaaagagctggtttagctggactaagagtaggatatggagcttttccacggagtattattgaattcctttggcgagcaaagcaaccatataatgtgtctgttgctgctgaagttgctgcttgtgctgctttaaagaaccccacgtatctggagaatgtgaaagtggcactggtgcaagaaagggagagactatttaatctcttgaaagaagtcccgtttcttgatccataccctagctattctaatttcattctctgtaaagtaacgtctggaatggatgctaagaaattgaaggaagaccttgcgactatgggagtgatgatccgtcactacaacagcaaggagttgaagggatatgtccgtgtctctgtaggcaagcccgagcacaccgaggcattgatgaaatgcctcaagcacttctattgatcttgctttgggtcggtacgacaaaatctgaagtgtcttgtgttctcatgctatcattcttcagaaataagtctttgtatggaaatgaggagtcacagagtgttcttcaagtgtacattatgttgaaaaaatggccatacaatggcatttgtagttttatacctttagacttggtctttttgacccttgattgcaaaaaattcatattgtaattcataaaagggttggactcatttgaagaaataatttagtttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="19821" stop="17548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19521" g_stop="19500" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19499" i_stop="19262" i_length="238">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19261" g_stop="19119" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="165" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19118" i_stop="18989" i_length="130">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18988" g_stop="18848" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="306" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18847" i_stop="18237" i_length="611">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18236" g_stop="17849" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="694" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17848" i_stop="17680" i_length="169">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17679" g_stop="17670" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="704" r_length="10" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E368974" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19521" e_stop="19500"/>
          <exon e_start="19261" e_stop="19119"/>
          <exon e_start="18988" e_stop="18848"/>
          <exon e_start="18236" e_stop="17849"/>
          <exon e_start="17679" e_stop="17670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCACGTTCAGCAAAAGAGCTGGTAGGTTCATTCTTTTCCATTTGACATCTATGAGAGAATGCAATATGTATGCTTGGAAAAACCGTCTGCCTCTTGTTGCTCTTTTGCTGATATAGTGCAAGATCTTATAAGTTGTAGCTGATACATCATCGTCTCCTGAGTATCCTGTTCACGAAATTAGTGTTTACAATTGCTGTCATAAATGGGTGATTGGGATTCAAGTATAGTTGACTAATTTAAGTGGTATTCCAATCCTCAGGTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGAATTCCTTTGGCGAGCAAAGCAACCATATAATGTGTCTGTTGCTGCTGAAGTTGCTGCTTGTGCTGCTTTAAAGAACCCCACGTATCTGGAGGTATCTTAGGATATGGAACATTTCCACTGTGCATTGCTGAGTAACTTTGCTCAAATGTTTCAATCTCTTTTATAAGTAACAGTATCATTTTTTTGGAAAGTTTTACTGATTATTGTGTCATTTATACCAGAATGTGAAAGTGGCACTGGTGCAAGAAAGGGAGAGACTATTTAATCTCTTGAAAGAAGTCCCGTTTCTTGATCCATACCCTAGCTATTCTAATTTCATTCTCTGTAAAGTAACGTCTGGAATGGATGCTAAGAAATTGAAGGTAAACGTGCTTATATCACCTAATTCTGTACTTGTAAAGTCAATTATGTCGCTTCTTCTCTTCCGATTCATTTATTTATTTAATTTGGTCTCATGTCTTTTCATCCTGGGCTATACGTTAATATGTATAAGCTTGATACCAAGGTGAAAGAAGTATTAAAGAACATGAATAAAGTAAAAATTATTTTAATAGATTACCTTGTTTCTTTTATGTTATGGTAGTGCATGGAATTACAGAGAGTTTGTTCGATTGCCAAGATACTCGATGATTATGCTAAGCGAGAGATGACCAATCATTACTGAGGTAGTGAATTAACATAAGATTGAGGATGTGACGTATTTGAGGTCTTTTACAGTGGAATAAGTCGGAGATCATTGGGTTGAGATTGAAGAATTGTTGTTTGATGCGTAAGGTCGTAGTAGTAATAGTAGTATTGACATTTATAGTTAGGCACAGTTGTGAAGTGATGCTATTAGTCCCCATGCTCACCCTTTCTTTGTATTGCATCTGTTTTATGAATATATCGTTCTGCTATTTTGAAGGCGCAGTTGGCCAGTAAATAATGCATTTCAGTCTCTCCTACATTTTAACTGTAGAAACTCGTGTTACAGGAAGACCTTGCGACTATGGGAGTGATGATCCGTCACTACAACAGCAAGGAGTTGAAGGGATATGTCCGTGTCTCTGTAGGCAAGCCCGAGCACACCGAGGCATTGATGAAATGCCTCAAGCACTTCTATTGATCTTGCTTTGGGTCGGTACGACAAAATCTGAAGTGTCTTGTGTTCTCATGCTATCATTCTTCAGAAATAAGTCTTTGTATGGAAATGAGGAGTCACAGAGTGTTCTTCAAGTGTACATTATGTTGAAAAAATGGCCATACAATGGCATTTGTAGTTTTATACCTTTAGACTTGGTCTTTTTGACCCTTGATTGCAAAAAATTCATATTGTAATTCATAAAAGGGTTGGACTCATTTGAAGAAATAATTTAGTTTTTCCTTGATGTTCTCTTTAACTTTTTAAGAAGGATCATACATCTATGTGATTTTCTTTATGAAGGATTGGTTTGTTAATAATTTCACAAGTGGGTGACGTTACTTCTACAAGATAGAAAGTCTTGTTTTTGAAAGAATCGTTTATCACACTTGTTTTTCATTGATTTCAAGCAAGAAAAAG</genome_strand>
        <mrna_strand>CGCACGTTCAGCAAAAGAGCTG..............................................................................................................................................................................................................................................GTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGAATTCCTTTGGCGAGCAAAGCAACCATATAATGTGTCTGTTGCTGCTGAAGTTGCTGCTTGTGCTGCTTTAAAGAACCCCACGTATCTGGAG..................................................................................................................................AATGTGAAAGTGGCACTGGTGCAAGAAAGGGAGAGACTATTTAATCTCTTGAAAGAAGTCCCGTTTCTTGATCCATACCCTAGCTATTCTAATTTCATTCTCTGTAAAGTAACGTCTGGAATGGATGCTAAGAAATTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACCTTGCGACTATGGGAGTGATGATCCGTCACTACAACAGCAAGGAGTTGAAGGGATATGTCCGTGTCTCTGTAGGCAAGCCCGAGCACACCGAGGCATTGATGAAATGCCTCAAGCACTTCTATTGATCTTGCTTTGGGTCGGTACGACAAAATCTGAAGTGTCTTGTGTTCTCATGCTATCATTCTTCAGAAATAAGTCTTTGTATGGAAATGAGGAGTCACAGAGTGTTCTTCAAGTGTACATTATGTTGAAAAAATGGCCATACAATGGCATTTGTAGTTTTATACCTTTAGACTTGGTCTTTTTGACCCTTGATTGCAAAAAATTCATATTGTAATTCATAAAAGGGTTGGACTCATTTGAAGAAATAATTTAGTTTTT.........................................................................................................................................................................CAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369590" ref_strand="+" ref_description="SGN-E369590 [TUS-25-N4](-)">
      <seq>gcacgttcagcaaaagagctggtttagctggactaagagtaggatatggagcttttccacggagtattattgaattcctttggcgagcaaagcaaccatataatgtgtctgttgctgctgaagttgctgcttgtgctgctttaaagaaccccacgtatctggagaatgtgaaagtggcactggtgcaagaaagggagagactatttaatctcttgaaagaagtcccgtttcttgatccataccctagctattctaatttcattctctgtaaagtaacgtctggaatggatgctaagaaattgaaggaagaccttgcgactatgggagtgatgatccgtcactacaacagcaaggagttgaagggatatgtccgtgtctctgtaggcaagcccgagcacaccgaggcattgatgaaatgcctcaagcacttctattgatcttgctttgggtcggtacgacaaaatctgaagtgtcttgtgttctcatgctatcattcttcagaaataagtctttgtatggaaatgaggagtcacagagtgttcttcaagtgtacattatgttgaaaaaatggccatacaatggcatttgtagttttatacctttagacttggtctttttgacccttgattgcaaaaaattcatattgtaattcataaaagggttggactcatttgaagaaataatttagtttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="19820" stop="17548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19520" g_stop="19500" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19499" i_stop="19262" i_length="238">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19261" g_stop="19119" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="164" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19118" i_stop="18989" i_length="130">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18988" g_stop="18848" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="305" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18847" i_stop="18237" i_length="611">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18236" g_stop="17849" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="693" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17848" i_stop="17680" i_length="169">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17679" g_stop="17670" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="703" r_length="10" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E369590" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19520" e_stop="19500"/>
          <exon e_start="19261" e_stop="19119"/>
          <exon e_start="18988" e_stop="18848"/>
          <exon e_start="18236" e_stop="17849"/>
          <exon e_start="17679" e_stop="17670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACGTTCAGCAAAAGAGCTGGTAGGTTCATTCTTTTCCATTTGACATCTATGAGAGAATGCAATATGTATGCTTGGAAAAACCGTCTGCCTCTTGTTGCTCTTTTGCTGATATAGTGCAAGATCTTATAAGTTGTAGCTGATACATCATCGTCTCCTGAGTATCCTGTTCACGAAATTAGTGTTTACAATTGCTGTCATAAATGGGTGATTGGGATTCAAGTATAGTTGACTAATTTAAGTGGTATTCCAATCCTCAGGTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGAATTCCTTTGGCGAGCAAAGCAACCATATAATGTGTCTGTTGCTGCTGAAGTTGCTGCTTGTGCTGCTTTAAAGAACCCCACGTATCTGGAGGTATCTTAGGATATGGAACATTTCCACTGTGCATTGCTGAGTAACTTTGCTCAAATGTTTCAATCTCTTTTATAAGTAACAGTATCATTTTTTTGGAAAGTTTTACTGATTATTGTGTCATTTATACCAGAATGTGAAAGTGGCACTGGTGCAAGAAAGGGAGAGACTATTTAATCTCTTGAAAGAAGTCCCGTTTCTTGATCCATACCCTAGCTATTCTAATTTCATTCTCTGTAAAGTAACGTCTGGAATGGATGCTAAGAAATTGAAGGTAAACGTGCTTATATCACCTAATTCTGTACTTGTAAAGTCAATTATGTCGCTTCTTCTCTTCCGATTCATTTATTTATTTAATTTGGTCTCATGTCTTTTCATCCTGGGCTATACGTTAATATGTATAAGCTTGATACCAAGGTGAAAGAAGTATTAAAGAACATGAATAAAGTAAAAATTATTTTAATAGATTACCTTGTTTCTTTTATGTTATGGTAGTGCATGGAATTACAGAGAGTTTGTTCGATTGCCAAGATACTCGATGATTATGCTAAGCGAGAGATGACCAATCATTACTGAGGTAGTGAATTAACATAAGATTGAGGATGTGACGTATTTGAGGTCTTTTACAGTGGAATAAGTCGGAGATCATTGGGTTGAGATTGAAGAATTGTTGTTTGATGCGTAAGGTCGTAGTAGTAATAGTAGTATTGACATTTATAGTTAGGCACAGTTGTGAAGTGATGCTATTAGTCCCCATGCTCACCCTTTCTTTGTATTGCATCTGTTTTATGAATATATCGTTCTGCTATTTTGAAGGCGCAGTTGGCCAGTAAATAATGCATTTCAGTCTCTCCTACATTTTAACTGTAGAAACTCGTGTTACAGGAAGACCTTGCGACTATGGGAGTGATGATCCGTCACTACAACAGCAAGGAGTTGAAGGGATATGTCCGTGTCTCTGTAGGCAAGCCCGAGCACACCGAGGCATTGATGAAATGCCTCAAGCACTTCTATTGATCTTGCTTTGGGTCGGTACGACAAAATCTGAAGTGTCTTGTGTTCTCATGCTATCATTCTTCAGAAATAAGTCTTTGTATGGAAATGAGGAGTCACAGAGTGTTCTTCAAGTGTACATTATGTTGAAAAAATGGCCATACAATGGCATTTGTAGTTTTATACCTTTAGACTTGGTCTTTTTGACCCTTGATTGCAAAAAATTCATATTGTAATTCATAAAAGGGTTGGACTCATTTGAAGAAATAATTTAGTTTTTCCTTGATGTTCTCTTTAACTTTTTAAGAAGGATCATACATCTATGTGATTTTCTTTATGAAGGATTGGTTTGTTAATAATTTCACAAGTGGGTGACGTTACTTCTACAAGATAGAAAGTCTTGTTTTTGAAAGAATCGTTTATCACACTTGTTTTTCATTGATTTCAAGCAAGAAAAAG</genome_strand>
        <mrna_strand>GCACGTTCAGCAAAAGAGCTG..............................................................................................................................................................................................................................................GTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGAATTCCTTTGGCGAGCAAAGCAACCATATAATGTGTCTGTTGCTGCTGAAGTTGCTGCTTGTGCTGCTTTAAAGAACCCCACGTATCTGGAG..................................................................................................................................AATGTGAAAGTGGCACTGGTGCAAGAAAGGGAGAGACTATTTAATCTCTTGAAAGAAGTCCCGTTTCTTGATCCATACCCTAGCTATTCTAATTTCATTCTCTGTAAAGTAACGTCTGGAATGGATGCTAAGAAATTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACCTTGCGACTATGGGAGTGATGATCCGTCACTACAACAGCAAGGAGTTGAAGGGATATGTCCGTGTCTCTGTAGGCAAGCCCGAGCACACCGAGGCATTGATGAAATGCCTCAAGCACTTCTATTGATCTTGCTTTGGGTCGGTACGACAAAATCTGAAGTGTCTTGTGTTCTCATGCTATCATTCTTCAGAAATAAGTCTTTGTATGGAAATGAGGAGTCACAGAGTGTTCTTCAAGTGTACATTATGTTGAAAAAATGGCCATACAATGGCATTTGTAGTTTTATACCTTTAGACTTGGTCTTTTTGACCCTTGATTGCAAAAAATTCATATTGTAATTCATAAAAGGGTTGGACTCATTTGAAGAAATAATTTAGTTTTT.........................................................................................................................................................................CAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370126" ref_strand="+" ref_description="SGN-E370126 [TUS-26-N4](-)">
      <seq>tgatctcattttgggtcggtacgacagaatctcaagtgtcttgtgttctcatgctatcattcttcagaaataagtctttgtatggaaatgaggagtcacagagtgttcttcaagtgtacattatgttgaaaaaatgttcattctatggcatttgtagttttatacctttagacttggtctttttgacccttgattgcaaaaaattcatattgtaattcataaaagggttggactcatttgaagaaataatttagtttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="18398" stop="17548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18107" g_stop="17848" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17847" i_stop="17680" i_length="168">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17679" g_stop="17671" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="269" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E370126" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18107" e_stop="17848"/>
          <exon e_start="17679" e_stop="17671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTTGCTTTGGGTCGGTACGACAAAATCTGAAGTGTCTTGTGTTCTCATGCTATCATTCTTCAGAAATAAGTCTTTGTATGGAAATGAGGAGTCACAGAGTGTTCTTCAAGTGTACATTATGTTGAAAAAATGGCCATACAATGGCATTTGTAGTTTTATACCTTTAGACTTGGTCTTTTTGACCCTTGATTGCAAAAAATTCATATTGTAATTCATAAAAGGGTTGGACTCATTTGAAGAAATAATTTAGTTTTTCCTTGATGTTCTCTTTAACTTTTTAAGAAGGATCATACATCTATGTGATTTTCTTTATGAAGGATTGGTTTGTTAATAATTTCACAAGTGGGTGACGTTACTTCTACAAGATAGAAAGTCTTGTTTTTGAAAGAATCGTTTATCACACTTGTTTTTCATTGATTTCAAGCAAGAAAAA</genome_strand>
        <mrna_strand>TGATCTCATTTTGGGTCGGTACGACAGAATCTCAAGTGTCTTGTGTTCTCATGCTATCATTCTTCAGAAATAAGTCTTTGTATGGAAATGAGGAGTCACAGAGTGTTCTTCAAGTGTACATTATGTTGAAAAAATGTTCATTCTATGGCATTTGTAGTTTTATACCTTTAGACTTGGTCTTTTTGACCCTTGATTGCAAAAAATTCATATTGTAATTCATAAAAGGGTTGGACTCATTTGAAGAAATAATTTAGTTTTTC........................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698970" ref_strand="+" ref_description="SGN-E698970 [FA08AF09]">
      <seq>aagattgttgactgcccacccactctttaatgtatgaatttgatgcagctgtaaatggagcaggtgtcatcaaggtgcctaggaacccagactttagcctggacgttgaacggattaccgaagtggttgaacgtgagaaaccaaagtgcatatttctgacatcacctaataatcctgatgggagtataattgatgatgaaactcttttggaaatacttcacctgcccatattggtaatattggatgaagcatatgttgagttttctggaatggagtctaagatgaagtgggtgaagaagcatgaaaatctgattgttcttcgcacgttcagcaaaagagctggtttagctggactaagagtaggatatggagcttttccacggagtattattgaattcctttggcgagcaaagcaaccatataatgtgtctgttgctgctgaagttgctgcttgtgctgctttaaagaaccccacgtatctggagaatgtgaaagtggcactggtgcaagaaagggagagactatttaatctcttgaaagaagtcccgtttcttgatccataccctagctattctaatttcattctctgtaaagttacgtctggaatggatgctaagaaattgaaggaagaccttgcgactatgggagtgatgatccgtcactacaacagccaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="21968" stop="17887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21668" g_stop="21593" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20828" g_stop="20720" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="184" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19657" g_stop="19500" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="342" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19499" i_stop="19262" i_length="238">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19261" g_stop="19119" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="485" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19118" i_stop="18989" i_length="130">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18988" g_stop="18848" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="626" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18847" i_stop="18237" i_length="611">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18236" g_stop="18187" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="677" r_length="51" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E698970" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21668" e_stop="21593"/>
          <exon e_start="20828" e_stop="20720"/>
          <exon e_start="19657" e_stop="19500"/>
          <exon e_start="19261" e_stop="19119"/>
          <exon e_start="18988" e_stop="18848"/>
          <exon e_start="18236" e_stop="18187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGGGTAAATATGATTTTTAATTATGTTTCGGAGTTCCTCATTATAATCATACTGAGTCTTAGATCCTTTCTCTTCTAGAAGAGTCTTGGGACTTGGACTTGTTTTGGTGCAATAAATCATCTTTGGTTGAATATATTATGGGAAATCTTGGAAAAATAAATGGTATACAGAAGAAGTTAGGAACTAAATGTAAGAGAGAGAGAGAGAGAAATAGATAAGATTCTATTGTCTCTTAGTTCGAGCAATAACTCGGTCTTACATTAGATAAAGCACTCTGACATTCTTATCAATTTTTTTGATCAGTAAAATACCGTCATTATCTGATGACATCTATTTATGGTTGGGTATAAACTCTTTTTGATTCCTGAAACAACTACTGTGATCTAATCATTTTCACTCCAAAGGATATTAGACTCCTAGTTATCATTGTAAGCTGATTATATATGTGCTTTATGGGGGATTGATAGTTTTCATAACACGTAGTTGTATTGGAATCACTGCAGCTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTCTTAGTTCCAATCATCTTCAAAGCTTTCAGTTGCAGCTTTCCTTTTTTCATTTTTTTCACTATTTTCTAGGTTCGTGAGATGGAGAAAATGACTAATAGGAAAGTATTACTAGAATCTCAATTTAGCCAGTAATACTGTGTTTCTTTTTTAATTGGAGGAGAACACCAATGATGAGATGGTCGCGATACTATTCCCATAATCGTTTGGTGGACAATATGGATGGAAAGAAACATACTGATTTTTTGAAGACAAACATTGCAACATGCATAATCTTAAACAAAATTGTATTTCTTTGCTAGATTTTTTGGTGCAACATGGCCATTATAAATGATGTAGATTCCATGCTGCATATGATTGGGGCTTTGCACACTTTTTAATTTTTAACACACCATCTTACTGTTGTTTACCATTTATAGAATATCATTACTTCTCAATAATTAAAAATAATGACATTATTGGTGTAAAAAGAGCTATAAGCAATTATGAAGTAAATTGATCAAATATTAATTCTTTTTTATTGAATTAATCAAAATAACATTTTTATGCAGATAATTATTTTGTATGCTTTCCATCTTTTTGCATGTATTTTATTTTATTTTTTGAAATAAGAGTTTTGCATGTATTTCTTCACCTAAGGGAATAGGACAATCGAAATTTATATTGTATTTAGAGTTTGTTTGGTATTATACATAAACACACTTCAAACATGGTATCAGGCCAGACAGAGGTCCTGAGATCGATCTCACCACCACCTAAATTAAAAAGAATTTCCACGTGCTAGGCCCATGAAAAAGAATCAGGCCGCACGTGAGGGAGCGTGTTGAGAATATTACTAACAAGTAAAAACTGTGATCTTTCTAACAGCTTATGTTTTTAGATGAGATGGTTACACACTTCAATAGATACCTTACCTCCTTTATGTTATTCTATTGAGACAATCTATCATGTTGTTGAACAGTATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTTTCTGGAATGGAGTCTAAGATGAAGTGGGTGAAGAAGCATGAAAATCTGATTGTTCTTCGCACGTTCAGCAAAAGAGCTGGTAGGTTCATTCTTTTCCATTTGACATCTATGAGAGAATGCAATATGTATGCTTGGAAAAACCGTCTGCCTCTTGTTGCTCTTTTGCTGATATAGTGCAAGATCTTATAAGTTGTAGCTGATACATCATCGTCTCCTGAGTATCCTGTTCACGAAATTAGTGTTTACAATTGCTGTCATAAATGGGTGATTGGGATTCAAGTATAGTTGACTAATTTAAGTGGTATTCCAATCCTCAGGTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGAATTCCTTTGGCGAGCAAAGCAACCATATAATGTGTCTGTTGCTGCTGAAGTTGCTGCTTGTGCTGCTTTAAAGAACCCCACGTATCTGGAGGTATCTTAGGATATGGAACATTTCCACTGTGCATTGCTGAGTAACTTTGCTCAAATGTTTCAATCTCTTTTATAAGTAACAGTATCATTTTTTTGGAAAGTTTTACTGATTATTGTGTCATTTATACCAGAATGTGAAAGTGGCACTGGTGCAAGAAAGGGAGAGACTATTTAATCTCTTGAAAGAAGTCCCGTTTCTTGATCCATACCCTAGCTATTCTAATTTCATTCTCTGTAAAGTAACGTCTGGAATGGATGCTAAGAAATTGAAGGTAAACGTGCTTATATCACCTAATTCTGTACTTGTAAAGTCAATTATGTCGCTTCTTCTCTTCCGATTCATTTATTTATTTAATTTGGTCTCATGTCTTTTCATCCTGGGCTATACGTTAATATGTATAAGCTTGATACCAAGGTGAAAGAAGTATTAAAGAACATGAATAAAGTAAAAATTATTTTAATAGATTACCTTGTTTCTTTTATGTTATGGTAGTGCATGGAATTACAGAGAGTTTGTTCGATTGCCAAGATACTCGATGATTATGCTAAGCGAGAGATGACCAATCATTACTGAGGTAGTGAATTAACATAAGATTGAGGATGTGACGTATTTGAGGTCTTTTACAGTGGAATAAGTCGGAGATCATTGGGTTGAGATTGAAGAATTGTTGTTTGATGCGTAAGGTCGTAGTAGTAATAGTAGTATTGACATTTATAGTTAGGCACAGTTGTGAAGTGATGCTATTAGTCCCCATGCTCACCCTTTCTTTGTATTGCATCTGTTTTATGAATATATCGTTCTGCTATTTTGAAGGCGCAGTTGGCCAGTAAATAATGCATTTCAGTCTCTCCTACATTTTAACTGTAGAAACTCGTGTTACAGGAAGACCTTGCGACTATGGGAGTGATGATCCGTCACTACAACAG-CAAGGA</genome_strand>
        <mrna_strand>AAGATTGTTGACTGCCCACCCACTCT-TTAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTTTCTGGAATGGAGTCTAAGATGAAGTGGGTGAAGAAGCATGAAAATCTGATTGTTCTTCGCACGTTCAGCAAAAGAGCTG..............................................................................................................................................................................................................................................GTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGAATTCCTTTGGCGAGCAAAGCAACCATATAATGTGTCTGTTGCTGCTGAAGTTGCTGCTTGTGCTGCTTTAAAGAACCCCACGTATCTGGAG..................................................................................................................................AATGTGAAAGTGGCACTGGTGCAAGAAAGGGAGAGACTATTTAATCTCTTGAAAGAAGTCCCGTTTCTTGATCCATACCCTAGCTATTCTAATTTCATTCTCTGTAAAGTTACGTCTGGAATGGATGCTAAGAAATTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACCTTGCGACTATGGGAGTGATGATCCGTCACTACAACAGCCAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417099" ref_strand="+" ref_description="SGN-E417099 [STM-24-N3]">
      <seq>gcgtattggaccctggtgacaagactgttgactgcccacccactttcacaatgtatgaatttgatgcagctgtaaatggagcaggtgtcatcaagggtgcctaggaacccagactttagcctggatgtagaacggattgccgaagtggttgaacttgagaaaccgaagtgcatatttctgacatcacctaataatcctgatgggagtataattgatgatgaaactcttttgaaaatacttcacctgcccatattggtaatattggatgaagcatatgttgagttttctggaatggagtcaaagatgaagtgggtgaagaagcatgaaaatctgattgttcttcgcacgttcagcaaaagagctggtttagctggactaagagtaggatatggagcttttccacggagtattattgaattcctttggcgagcaaagcaaccatataatgtgtctgttgctgctgaagttgctgcttgtgcagctttaaagaaccccacgtatctggaagatgtggaaagtggcactggtgcaagaaagggagaggctatttaatctcttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="21988" stop="18636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21688" g_stop="21593" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20828" g_stop="20720" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="206" r_length="110" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19657" g_stop="19500" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="364" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19499" i_stop="19262" i_length="238">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19261" g_stop="19119" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="507" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19118" i_stop="18989" i_length="130">
            <donor d_prob="0.862" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18988" g_stop="18936" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="561" r_length="54" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E417099" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21688" e_stop="21593"/>
          <exon e_start="20828" e_stop="20720"/>
          <exon e_start="19657" e_stop="19500"/>
          <exon e_start="19261" e_stop="19119"/>
          <exon e_start="18988" e_stop="18936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGGGTAAATATGATTTTTAATTATGTTTCGGAGTTCCTCATTATAATCATACTGAGTCTTAGATCCTTTCTCTTCTAGAAGAGTCTTGGGACTTGGACTTGTTTTGGTGCAATAAATCATCTTTGGTTGAATATATTATGGGAAATCTTGGAAAAATAAATGGTATACAGAAGAAGTTAGGAACTAAATGTAAGAGAGAGAGAGAGAGAAATAGATAAGATTCTATTGTCTCTTAGTTCGAGCAATAACTCGGTCTTACATTAGATAAAGCACTCTGACATTCTTATCAATTTTTTTGATCAGTAAAATACCGTCATTATCTGATGACATCTATTTATGGTTGGGTATAAACTCTTTTTGATTCCTGAAACAACTACTGTGATCTAATCATTTTCACTCCAAAGGATATTAGACTCCTAGTTATCATTGTAAGCTGATTATATATGTGCTTTATGGGGGATTGATAGTTTTCATAACACGTAGTTGTATTGGAATCACTGCAGCTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAG-TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTCTTAGTTCCAATCATCTTCAAAGCTTTCAGTTGCAGCTTTCCTTTTTTCATTTTTTTCACTATTTTCTAGGTTCGTGAGATGGAGAAAATGACTAATAGGAAAGTATTACTAGAATCTCAATTTAGCCAGTAATACTGTGTTTCTTTTTTAATTGGAGGAGAACACCAATGATGAGATGGTCGCGATACTATTCCCATAATCGTTTGGTGGACAATATGGATGGAAAGAAACATACTGATTTTTTGAAGACAAACATTGCAACATGCATAATCTTAAACAAAATTGTATTTCTTTGCTAGATTTTTTGGTGCAACATGGCCATTATAAATGATGTAGATTCCATGCTGCATATGATTGGGGCTTTGCACACTTTTTAATTTTTAACACACCATCTTACTGTTGTTTACCATTTATAGAATATCATTACTTCTCAATAATTAAAAATAATGACATTATTGGTGTAAAAAGAGCTATAAGCAATTATGAAGTAAATTGATCAAATATTAATTCTTTTTTATTGAATTAATCAAAATAACATTTTTATGCAGATAATTATTTTGTATGCTTTCCATCTTTTTGCATGTATTTTATTTTATTTTTTGAAATAAGAGTTTTGCATGTATTTCTTCACCTAAGGGAATAGGACAATCGAAATTTATATTGTATTTAGAGTTTGTTTGGTATTATACATAAACACACTTCAAACATGGTATCAGGCCAGACAGAGGTCCTGAGATCGATCTCACCACCACCTAAATTAAAAAGAATTTCCACGTGCTAGGCCCATGAAAAAGAATCAGGCCGCACGTGAGGGAGCGTGTTGAGAATATTACTAACAAGTAAAAACTGTGATCTTTCTAACAGCTTATGTTTTTAGATGAGATGGTTACACACTTCAATAGATACCTTACCTCCTTTATGTTATTCTATTGAGACAATCTATCATGTTGTTGAACAGTATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTTTCTGGAATGGAGTCTAAGATGAAGTGGGTGAAGAAGCATGAAAATCTGATTGTTCTTCGCACGTTCAGCAAAAGAGCTGGTAGGTTCATTCTTTTCCATTTGACATCTATGAGAGAATGCAATATGTATGCTTGGAAAAACCGTCTGCCTCTTGTTGCTCTTTTGCTGATATAGTGCAAGATCTTATAAGTTGTAGCTGATACATCATCGTCTCCTGAGTATCCTGTTCACGAAATTAGTGTTTACAATTGCTGTCATAAATGGGTGATTGGGATTCAAGTATAGTTGACTAATTTAAGTGGTATTCCAATCCTCAGGTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGAATTCCTTTGGCGAGCAAAGCAACCATATAATGTGTCTGTTGCTGCTGAAGTTGCTGCTTGTGCTGCTTTAAAGAACCCCACGTATCTGGAGGTATCTTAGGATATGGAACATTTCCACTGTGCATTGCTGAGTAACTTTGCTCAAATGTTTCAATCTCTTTTATAAGTAACAGTATCATTTTTTTGGAAAGTTTTACTGATTATTGTGTCATTTATACCAGAATGT-GAAAGTGGCACTGGTGCAAGAAAGGGAGAGACTATTTAATCTCTTGAA</genome_strand>
        <mrna_strand>GCGTATTGGACCCTGGTGACAAGACTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCTAGGAACCCAGACTTTAGCCTGGATGTAGAACGGATTGCCGAAGTGGTTGAACTTGAGAAACCGAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTGATGATGAAACTCTTTTGAAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTTTCTGGAATGGAGTCAAAGATGAAGTGGGTGAAGAAGCATGAAAATCTGATTGTTCTTCGCACGTTCAGCAAAAGAGCTG..............................................................................................................................................................................................................................................GTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGAATTCCTTTGGCGAGCAAAGCAACCATATAATGTGTCTGTTGCTGCTGAAGTTGCTGCTTGTGCAGCTTTAAAGAACCCCACGTATCTGGAA..................................................................................................................................GATGTGGAAAGTGGCACTGGTGCAAGAAAGGGAGAGGCTATTTAATCTCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204580" ref_strand="+" ref_description="SGN-E204580 [cLEC-24-M8]">
      <seq>agccgcacgctgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcattgatttgataatgagatgcatattggatcctggtgacaagattgttgactgcccacccactttcacaatgtatgaatttgatgcagctgtaaatggagcaggtgtcatcaaggtgcctaggaacccagactttagcctggacgttgaacggattaccgaagtggttgaacgtgagaaaccaaagtgcatatttctgacatcacctaataatcctgatgggagtataattgatgatgaaactcttttggaaatacttcacctgcccatattggtaatattggatgaagcatatgttgagttttctggaatggagtctaagatgaagtgggtgaagaagcatgaaaatctgattgttcttcgcacgttcagcaaaagagctgtggtattccaatcctcaggtttagctggactaagagtaggatatggagcttttccacggagtattattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="22214" stop="18910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21914" g_stop="21814" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21690" g_stop="21593" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="199" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20828" g_stop="20720" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="308" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19657" g_stop="19500" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="466" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19499" i_stop="19280" i_length="220">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19279" g_stop="19210" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="536" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E204580" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21914" e_stop="21814"/>
          <exon e_start="21690" e_stop="21593"/>
          <exon e_start="20828" e_stop="20720"/>
          <exon e_start="19657" e_stop="19500"/>
          <exon e_start="19279" e_stop="19210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGGGTAAATATGATTTTTAATTATGTTTCGGAGTTCCTCATTATAATCATACTGAGTCTTAGATCCTTTCTCTTCTAGAAGAGTCTTGGGACTTGGACTTGTTTTGGTGCAATAAATCATCTTTGGTTGAATATATTATGGGAAATCTTGGAAAAATAAATGGTATACAGAAGAAGTTAGGAACTAAATGTAAGAGAGAGAGAGAGAGAAATAGATAAGATTCTATTGTCTCTTAGTTCGAGCAATAACTCGGTCTTACATTAGATAAAGCACTCTGACATTCTTATCAATTTTTTTGATCAGTAAAATACCGTCATTATCTGATGACATCTATTTATGGTTGGGTATAAACTCTTTTTGATTCCTGAAACAACTACTGTGATCTAATCATTTTCACTCCAAAGGATATTAGACTCCTAGTTATCATTGTAAGCTGATTATATATGTGCTTTATGGGGGATTGATAGTTTTCATAACACGTAGTTGTATTGGAATCACTGCAGCTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTCTTAGTTCCAATCATCTTCAAAGCTTTCAGTTGCAGCTTTCCTTTTTTCATTTTTTTCACTATTTTCTAGGTTCGTGAGATGGAGAAAATGACTAATAGGAAAGTATTACTAGAATCTCAATTTAGCCAGTAATACTGTGTTTCTTTTTTAATTGGAGGAGAACACCAATGATGAGATGGTCGCGATACTATTCCCATAATCGTTTGGTGGACAATATGGATGGAAAGAAACATACTGATTTTTTGAAGACAAACATTGCAACATGCATAATCTTAAACAAAATTGTATTTCTTTGCTAGATTTTTTGGTGCAACATGGCCATTATAAATGATGTAGATTCCATGCTGCATATGATTGGGGCTTTGCACACTTTTTAATTTTTAACACACCATCTTACTGTTGTTTACCATTTATAGAATATCATTACTTCTCAATAATTAAAAATAATGACATTATTGGTGTAAAAAGAGCTATAAGCAATTATGAAGTAAATTGATCAAATATTAATTCTTTTTTATTGAATTAATCAAAATAACATTTTTATGCAGATAATTATTTTGTATGCTTTCCATCTTTTTGCATGTATTTTATTTTATTTTTTGAAATAAGAGTTTTGCATGTATTTCTTCACCTAAGGGAATAGGACAATCGAAATTTATATTGTATTTAGAGTTTGTTTGGTATTATACATAAACACACTTCAAACATGGTATCAGGCCAGACAGAGGTCCTGAGATCGATCTCACCACCACCTAAATTAAAAAGAATTTCCACGTGCTAGGCCCATGAAAAAGAATCAGGCCGCACGTGAGGGAGCGTGTTGAGAATATTACTAACAAGTAAAAACTGTGATCTTTCTAACAGCTTATGTTTTTAGATGAGATGGTTACACACTTCAATAGATACCTTACCTCCTTTATGTTATTCTATTGAGACAATCTATCATGTTGTTGAACAGTATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTTTCTGGAATGGAGTCTAAGATGAAGTGGGTGAAGAAGCATGAAAATCTGATTGTTCTTCGCACGTTCAGCAAAAGAGCTGGTAGGTTCATTCTTTTCCATTTGACATCTATGAGAGAATGCAATATGTATGCTTGGAAAAACCGTCTGCCTCTTGTTGCTCTTTTGCTGATATAGTGCAAGATCTTATAAGTTGTAGCTGATACATCATCGTCTCCTGAGTATCCTGTTCACGAAATTAGTGTTTACAATTGCTGTCATAAATGGGTGATTGGGATTCAAGTATAGTTGACTAATTTAAGTGGTATTCCAATCCTCAGGTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGA</genome_strand>
        <mrna_strand>AGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTTTCTGGAATGGAGTCTAAGATGAAGTGGGTGAAGAAGCATGAAAATCTGATTGTTCTTCGCACGTTCAGCAAAAGAGCTG............................................................................................................................................................................................................................TGGTATTCCAATCCTCAGGTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707237" ref_strand="+" ref_description="SGN-E707237 [FA32BG06]">
      <seq>ccataacttgttcctctcccgccggcaatccagttgtaccagatatagcaagttttgattgatgggtgtgattgaattatgcaacatttcatctattagcattgttagagcaaaacccagttctttaaacgaagggaatcggaggaggagaattgcttgtatggcctcttcagtgtcagtgcaagaagaggagagccatcagcagaaacaaggtgtaaatgggggttcttttattcggacccatcttcttaaattgtccccttaccaacccattttgccatttgaggtcttgtccactcgtcttggtagaaagcctgaggacattgtgaaattagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttggggtctatgaaatttccatacatttatcctgatcctgaaagccgcacgctgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcattgatttgataatgagatgcgtattggatcctggtgacaagattgttgactgcccacccactttcacaatgtatgaatttgatgcagctgtaaatggagcaggtgtcatcaaggtgcctaggaacccagactttagcctggacgttgaacggattaccgaagtggttgaacgtgaaaaccaaagtgcatatttctgacatcacctaataatcctgatgggagtataattgatgatgaaactcttttggaaatacttcacctgcccatattggtaatattggatgaagcatatgttgagttttctggaatggagtctaagatgaagtgggtgaagaagcatgaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24953" stop="19233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24654" g_stop="24614" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24613" i_stop="24491" i_length="123">
            <donor d_prob="0.943" d_score="0.93"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24490" g_stop="24246" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="286" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="370" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21968" g_stop="21814" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="525" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21690" g_stop="21593" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="623" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20828" g_stop="20720" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="731" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19657" g_stop="19533" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="856" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E707237" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24654" e_stop="24614"/>
          <exon e_start="24490" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21814"/>
          <exon e_start="21690" e_stop="21593"/>
          <exon e_start="20828" e_stop="20720"/>
          <exon e_start="19657" e_stop="19533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACTTGTTCCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGGGTAAATATGATTTTTAATTATGTTTCGGAGTTCCTCATTATAATCATACTGAGTCTTAGATCCTTTCTCTTCTAGAAGAGTCTTGGGACTTGGACTTGTTTTGGTGCAATAAATCATCTTTGGTTGAATATATTATGGGAAATCTTGGAAAAATAAATGGTATACAGAAGAAGTTAGGAACTAAATGTAAGAGAGAGAGAGAGAGAAATAGATAAGATTCTATTGTCTCTTAGTTCGAGCAATAACTCGGTCTTACATTAGATAAAGCACTCTGACATTCTTATCAATTTTTTTGATCAGTAAAATACCGTCATTATCTGATGACATCTATTTATGGTTGGGTATAAACTCTTTTTGATTCCTGAAACAACTACTGTGATCTAATCATTTTCACTCCAAAGGATATTAGACTCCTAGTTATCATTGTAAGCTGATTATATATGTGCTTTATGGGGGATTGATAGTTTTCATAACACGTAGTTGTATTGGAATCACTGCAGCTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTCTTAGTTCCAATCATCTTCAAAGCTTTCAGTTGCAGCTTTCCTTTTTTCATTTTTTTCACTATTTTCTAGGTTCGTGAGATGGAGAAAATGACTAATAGGAAAGTATTACTAGAATCTCAATTTAGCCAGTAATACTGTGTTTCTTTTTTAATTGGAGGAGAACACCAATGATGAGATGGTCGCGATACTATTCCCATAATCGTTTGGTGGACAATATGGATGGAAAGAAACATACTGATTTTTTGAAGACAAACATTGCAACATGCATAATCTTAAACAAAATTGTATTTCTTTGCTAGATTTTTTGGTGCAACATGGCCATTATAAATGATGTAGATTCCATGCTGCATATGATTGGGGCTTTGCACACTTTTTAATTTTTAACACACCATCTTACTGTTGTTTACCATTTATAGAATATCATTACTTCTCAATAATTAAAAATAATGACATTATTGGTGTAAAAAGAGCTATAAGCAATTATGAAGTAAATTGATCAAATATTAATTCTTTTTTATTGAATTAATCAAAATAACATTTTTATGCAGATAATTATTTTGTATGCTTTCCATCTTTTTGCATGTATTTTATTTTATTTTTTGAAATAAGAGTTTTGCATGTATTTCTTCACCTAAGGGAATAGGACAATCGAAATTTATATTGTATTTAGAGTTTGTTTGGTATTATACATAAACACACTTCAAACATGGTATCAGGCCAGACAGAGGTCCTGAGATCGATCTCACCACCACCTAAATTAAAAAGAATTTCCACGTGCTAGGCCCATGAAAAAGAATCAGGCCGCACGTGAGGGAGCGTGTTGAGAATATTACTAACAAGTAAAAACTGTGATCTTTCTAACAGCTTATGTTTTTAGATGAGATGGTTACACACTTCAATAGATACCTTACCTCCTTTATGTTATTCTATTGAGACAATCTATCATGTTGTTGAACAGTATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTTTCTGGAATGGAGTCTAAGATGAAGTGGGTGAAGAAGCATGAAAATC</genome_strand>
        <mrna_strand>CCATAACTTGTTCCTCTCCCGCCGGCAATCCAGTTGTACCA...........................................................................................................................GATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGCGTATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGA-AAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTTTCTGGAATGGAGTCTAAGATGAAGTGGGTGAAGAAGCATGAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250645" ref_strand="+" ref_description="SGN-E250645 [cLEG-7-J1]">
      <seq>tcggacccatcttcttaaattgtccccttaccaacccattttgccatttgaggtcttgtccactcgtcttggtagaaagcctgaggacattgtgaaattagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttggggtctatgaaatttccatacatttatcctgatcctgaaagccgcacgctgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcattgatttgataatgagatgcatattggatcctggtgacaagattgttgactgcccacccactttcacaatgtatgaatttgatgcagctgtaaatggagcaggtgtcatcaaggtgcctaggaacccagactttagcctggacgttgaacggattaccgaagtggttgaacgtgagaaaccaaagtgcatatttctgacatcacctaataatcctgatgggagtataattgatgatgaaactcttttggaaatacttcacctgcccatattggtaatattggatgaagcatatgttgagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24597" stop="19279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24297" g_stop="24246" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="136" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21968" g_stop="21814" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="291" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21690" g_stop="21593" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="389" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20828" g_stop="20720" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="498" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19657" g_stop="19579" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="577" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E250645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24297" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21814"/>
          <exon e_start="21690" e_stop="21593"/>
          <exon e_start="20828" e_stop="20720"/>
          <exon e_start="19657" e_stop="19579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGGGTAAATATGATTTTTAATTATGTTTCGGAGTTCCTCATTATAATCATACTGAGTCTTAGATCCTTTCTCTTCTAGAAGAGTCTTGGGACTTGGACTTGTTTTGGTGCAATAAATCATCTTTGGTTGAATATATTATGGGAAATCTTGGAAAAATAAATGGTATACAGAAGAAGTTAGGAACTAAATGTAAGAGAGAGAGAGAGAGAAATAGATAAGATTCTATTGTCTCTTAGTTCGAGCAATAACTCGGTCTTACATTAGATAAAGCACTCTGACATTCTTATCAATTTTTTTGATCAGTAAAATACCGTCATTATCTGATGACATCTATTTATGGTTGGGTATAAACTCTTTTTGATTCCTGAAACAACTACTGTGATCTAATCATTTTCACTCCAAAGGATATTAGACTCCTAGTTATCATTGTAAGCTGATTATATATGTGCTTTATGGGGGATTGATAGTTTTCATAACACGTAGTTGTATTGGAATCACTGCAGCTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTCTTAGTTCCAATCATCTTCAAAGCTTTCAGTTGCAGCTTTCCTTTTTTCATTTTTTTCACTATTTTCTAGGTTCGTGAGATGGAGAAAATGACTAATAGGAAAGTATTACTAGAATCTCAATTTAGCCAGTAATACTGTGTTTCTTTTTTAATTGGAGGAGAACACCAATGATGAGATGGTCGCGATACTATTCCCATAATCGTTTGGTGGACAATATGGATGGAAAGAAACATACTGATTTTTTGAAGACAAACATTGCAACATGCATAATCTTAAACAAAATTGTATTTCTTTGCTAGATTTTTTGGTGCAACATGGCCATTATAAATGATGTAGATTCCATGCTGCATATGATTGGGGCTTTGCACACTTTTTAATTTTTAACACACCATCTTACTGTTGTTTACCATTTATAGAATATCATTACTTCTCAATAATTAAAAATAATGACATTATTGGTGTAAAAAGAGCTATAAGCAATTATGAAGTAAATTGATCAAATATTAATTCTTTTTTATTGAATTAATCAAAATAACATTTTTATGCAGATAATTATTTTGTATGCTTTCCATCTTTTTGCATGTATTTTATTTTATTTTTTGAAATAAGAGTTTTGCATGTATTTCTTCACCTAAGGGAATAGGACAATCGAAATTTATATTGTATTTAGAGTTTGTTTGGTATTATACATAAACACACTTCAAACATGGTATCAGGCCAGACAGAGGTCCTGAGATCGATCTCACCACCACCTAAATTAAAAAGAATTTCCACGTGCTAGGCCCATGAAAAAGAATCAGGCCGCACGTGAGGGAGCGTGTTGAGAATATTACTAACAAGTAAAAACTGTGATCTTTCTAACAGCTTATGTTTTTAGATGAGATGGTTACACACTTCAATAGATACCTTACCTCCTTTATGTTATTCTATTGAGACAATCTATCATGTTGTTGAACAGTATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTT</genome_strand>
        <mrna_strand>TCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300156" ref_strand="+" ref_description="SGN-E300156 [cLEW-11-L14]">
      <seq>gacccatctttttaaatagcacccttaccaacccattttgccattggaagtcttgtccacttgtcttggtagaaagcctgatgacattgtgaaattagacgctaactaaaacccctatggacctcctccagaggtaaacgaagctttggggtctatgaaatttccatacatttatcctgatcctgaaagccgcacgctgcgtgcaggtcttgctgaatattctggccttgaatctgagtatattcttgcatggtgcggtgcagatgaactcattgatttgataatgagatgcatattggatcctggtgacaagattgttgactgcccacccactttcacaatgtatgaatatgatgcacctgtaaatggagcacgtgtcatcaaggtgcctaggaacccagactttagcctggacgttgaacggattaccgaagtggttgaacgtgagaaaccaaagtgcatatttctgacatcacctaataatcctgatgggagtataattgatgatgaaactcttttggaaataacttacctggccatattggttatattggatgaagcatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24594" stop="19286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24294" g_stop="24246" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="133" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21968" g_stop="21814" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="288" r_length="155" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21690" g_stop="21593" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="386" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20828" g_stop="20720" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="495" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19657" g_stop="19586" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="567" r_length="72" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E300156" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24294" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21814"/>
          <exon e_start="21690" e_stop="21593"/>
          <exon e_start="20828" e_stop="20720"/>
          <exon e_start="19657" e_stop="19586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGGGTAAATATGATTTTTAATTATGTTTCGGAGTTCCTCATTATAATCATACTGAGTCTTAGATCCTTTCTCTTCTAGAAGAGTCTTGGGACTTGGACTTGTTTTGGTGCAATAAATCATCTTTGGTTGAATATATTATGGGAAATCTTGGAAAAATAAATGGTATACAGAAGAAGTTAGGAACTAAATGTAAGAGAGAGAGAGAGAGAAATAGATAAGATTCTATTGTCTCTTAGTTCGAGCAATAACTCGGTCTTACATTAGATAAAGCACTCTGACATTCTTATCAATTTTTTTGATCAGTAAAATACCGTCATTATCTGATGACATCTATTTATGGTTGGGTATAAACTCTTTTTGATTCCTGAAACAACTACTGTGATCTAATCATTTTCACTCCAAAGGATATTAGACTCCTAGTTATCATTGTAAGCTGATTATATATGTGCTTTATGGGGGATTGATAGTTTTCATAACACGTAGTTGTATTGGAATCACTGCAGCTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTCTTAGTTCCAATCATCTTCAAAGCTTTCAGTTGCAGCTTTCCTTTTTTCATTTTTTTCACTATTTTCTAGGTTCGTGAGATGGAGAAAATGACTAATAGGAAAGTATTACTAGAATCTCAATTTAGCCAGTAATACTGTGTTTCTTTTTTAATTGGAGGAGAACACCAATGATGAGATGGTCGCGATACTATTCCCATAATCGTTTGGTGGACAATATGGATGGAAAGAAACATACTGATTTTTTGAAGACAAACATTGCAACATGCATAATCTTAAACAAAATTGTATTTCTTTGCTAGATTTTTTGGTGCAACATGGCCATTATAAATGATGTAGATTCCATGCTGCATATGATTGGGGCTTTGCACACTTTTTAATTTTTAACACACCATCTTACTGTTGTTTACCATTTATAGAATATCATTACTTCTCAATAATTAAAAATAATGACATTATTGGTGTAAAAAGAGCTATAAGCAATTATGAAGTAAATTGATCAAATATTAATTCTTTTTTATTGAATTAATCAAAATAACATTTTTATGCAGATAATTATTTTGTATGCTTTCCATCTTTTTGCATGTATTTTATTTTATTTTTTGAAATAAGAGTTTTGCATGTATTTCTTCACCTAAGGGAATAGGACAATCGAAATTTATATTGTATTTAGAGTTTGTTTGGTATTATACATAAACACACTTCAAACATGGTATCAGGCCAGACAGAGGTCCTGAGATCGATCTCACCACCACCTAAATTAAAAAGAATTTCCACGTGCTAGGCCCATGAAAAAGAATCAGGCCGCACGTGAGGGAGCGTGTTGAGAATATTACTAACAAGTAAAAACTGTGATCTTTCTAACAGCTTATGTTTTTAGATGAGATGGTTACACACTTCAATAGATACCTTACCTCCTTTATGTTATTCTATTGAGACAATCTATCATGTTGTTGAACAGTATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGT</genome_strand>
        <mrna_strand>GACCCATCTTTTTAAATAGCACCCTTACCAACCCATTTTGCCATTGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGTCCACTTGTCTTGGTAGAAAGCCTGATGACATTGTGAAATTAGACGCTAACTAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGGTCTTGCTGAATATTCTGGCCTTGAATCTGAGTATATTCTTGCATGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATATGATGCACCTGTAAATGGAGCACGTGTCATCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTGATGATGAAACTCTTTTGGAAATAACTTACCTGGCCATATTGGTTATATTGGATGAAGCATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454145" ref_strand="+" ref_description="SGN-E454145 [cSTS-22-C22]">
      <seq>gttgaaataacaagtttcgattgatgggtgtgattgaattatgcaacatttcatctatttgcattggtagagcaaaacccagttctttaatcgaaggaaatcggaggaggagaattacttgtatggcctcttcagtgtcagtgcaagaagaggagagtcatcagcagaaacaatgtgttaatgggggttcttttattcggacccatcttcttaaattgtccccttatcaacccattttgccatttgaggtgttgtccactcgtcttggtagaaagccagaggacattgttaagttagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttgggggctatgaaatttccatatatttatcctgatcctgaaagccgtacgttgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcattgatttgataatgagatgcgtattggatcctggtgacaagattgttgactgcccacccactttcacaatgtatgaatttgatgcagctgtaaatggagcaggtgtcatcaaggtgcctaggaacccagactttagcctggatgtagaacggattgccggagtggttgaacttgagaaaccgaagtgcatatttctgacatcacctaataatcctgatgggagtataattgatgatgaaactcttttgaaaatacttcacctgcccatattggtaatattggatgaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24790" stop="19291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24622" g_stop="24620" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24619" i_stop="24491" i_length="129">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.847" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24490" g_stop="24246" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="248" r_length="245" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="332" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21968" g_stop="21814" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="487" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21690" g_stop="21593" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="585" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20828" g_stop="20720" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="694" r_length="109" r_score="0.945"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19657" g_stop="19591" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="761" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E454145" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24622" e_stop="24620"/>
          <exon e_start="24490" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21814"/>
          <exon e_start="21690" e_stop="21593"/>
          <exon e_start="20828" e_stop="20720"/>
          <exon e_start="19657" e_stop="19591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGGGTAAATATGATTTTTAATTATGTTTCGGAGTTCCTCATTATAATCATACTGAGTCTTAGATCCTTTCTCTTCTAGAAGAGTCTTGGGACTTGGACTTGTTTTGGTGCAATAAATCATCTTTGGTTGAATATATTATGGGAAATCTTGGAAAAATAAATGGTATACAGAAGAAGTTAGGAACTAAATGTAAGAGAGAGAGAGAGAGAAATAGATAAGATTCTATTGTCTCTTAGTTCGAGCAATAACTCGGTCTTACATTAGATAAAGCACTCTGACATTCTTATCAATTTTTTTGATCAGTAAAATACCGTCATTATCTGATGACATCTATTTATGGTTGGGTATAAACTCTTTTTGATTCCTGAAACAACTACTGTGATCTAATCATTTTCACTCCAAAGGATATTAGACTCCTAGTTATCATTGTAAGCTGATTATATATGTGCTTTATGGGGGATTGATAGTTTTCATAACACGTAGTTGTATTGGAATCACTGCAGCTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTCTTAGTTCCAATCATCTTCAAAGCTTTCAGTTGCAGCTTTCCTTTTTTCATTTTTTTCACTATTTTCTAGGTTCGTGAGATGGAGAAAATGACTAATAGGAAAGTATTACTAGAATCTCAATTTAGCCAGTAATACTGTGTTTCTTTTTTAATTGGAGGAGAACACCAATGATGAGATGGTCGCGATACTATTCCCATAATCGTTTGGTGGACAATATGGATGGAAAGAAACATACTGATTTTTTGAAGACAAACATTGCAACATGCATAATCTTAAACAAAATTGTATTTCTTTGCTAGATTTTTTGGTGCAACATGGCCATTATAAATGATGTAGATTCCATGCTGCATATGATTGGGGCTTTGCACACTTTTTAATTTTTAACACACCATCTTACTGTTGTTTACCATTTATAGAATATCATTACTTCTCAATAATTAAAAATAATGACATTATTGGTGTAAAAAGAGCTATAAGCAATTATGAAGTAAATTGATCAAATATTAATTCTTTTTTATTGAATTAATCAAAATAACATTTTTATGCAGATAATTATTTTGTATGCTTTCCATCTTTTTGCATGTATTTTATTTTATTTTTTGAAATAAGAGTTTTGCATGTATTTCTTCACCTAAGGGAATAGGACAATCGAAATTTATATTGTATTTAGAGTTTGTTTGGTATTATACATAAACACACTTCAAACATGGTATCAGGCCAGACAGAGGTCCTGAGATCGATCTCACCACCACCTAAATTAAAAAGAATTTCCACGTGCTAGGCCCATGAAAAAGAATCAGGCCGCACGTGAGGGAGCGTGTTGAGAATATTACTAACAAGTAAAAACTGTGATCTTTCTAACAGCTTATGTTTTTAGATGAGATGGTTACACACTTCAATAGATACCTTACCTCCTTTATGTTATTCTATTGAGACAATCTATCATGTTGTTGAACAGTATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCA</genome_strand>
        <mrna_strand>GTT.................................................................................................................................GAAATAACAAGTTTCGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTTGCATTGGTAGAGCAAAACCCAGTTCTTTAATCGAAGGAAATCGGAGGAGGAGAATTACTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGTCATCAGCAGAAACAATGTGTTAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTATCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTCCACTCGTCTTGGTAGAAAGCCAGAGGACATTGTTAAGTTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGGCTATGAAATTTCCATATATTTATCCTGATCCTGAAAGCCGTACGTTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGCGTATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTAGGAACCCAGACTTTAGCCTGGATGTAGAACGGATTGCCGGAGTGGTTGAACTTGAGAAACCGAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTGATGATGAAACTCTTTTGAAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262862" ref_strand="+" ref_description="SGN-E262862 [cLEG-59-E12]">
      <seq>acttgttcctctcccgccggctatccagttgatatagcaagttttgattgatgggtgtgattgaattatgcaacatttcatctattagcattgttagagcaaaacccagttctttaaacgaagggaatcggaggaggagaattgcttgtatggcctcttcagtgtcagtgcaagaagaggagagccatcagcagaaacaaggtgtaaatgggggttcttttattcggacccatcttcttaaattgtccccttaccaacccattttgccatttgaggtcttgtccactcgtcttggtagaaagcctgaggacattgtgaaattagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttggggtctatgaaatttccatacatttatcctgatcctgaaagccgcacgctgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcattgatttgataatgagatgcatattggatcctggtgacaagattgttgactgcccacccactttcacaatgtatgaatttgatgcagctgtaaatggagcaggtgtcatcaaggtgcctaggaacccagactttagcctggacgttgaacggattaccgaagtggttgaacgtgagaaacaaagtgcatatttctgacatcacctaataatcctgatgggagtantattgatgatgaaactcttttggaatacttcaccctgccatattgggtatattggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24949" stop="19295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24649" g_stop="24620" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24619" i_stop="24491" i_length="129">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24490" g_stop="24246" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="275" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="359" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21968" g_stop="21814" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="514" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21690" g_stop="21593" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="612" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20828" g_stop="20720" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="720" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19657" g_stop="19595" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="782" r_length="62" r_score="0.873"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E262862" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24649" e_stop="24620"/>
          <exon e_start="24490" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21814"/>
          <exon e_start="21690" e_stop="21593"/>
          <exon e_start="20828" e_stop="20720"/>
          <exon e_start="19657" e_stop="19595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTTCCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGGGTAAATATGATTTTTAATTATGTTTCGGAGTTCCTCATTATAATCATACTGAGTCTTAGATCCTTTCTCTTCTAGAAGAGTCTTGGGACTTGGACTTGTTTTGGTGCAATAAATCATCTTTGGTTGAATATATTATGGGAAATCTTGGAAAAATAAATGGTATACAGAAGAAGTTAGGAACTAAATGTAAGAGAGAGAGAGAGAGAAATAGATAAGATTCTATTGTCTCTTAGTTCGAGCAATAACTCGGTCTTACATTAGATAAAGCACTCTGACATTCTTATCAATTTTTTTGATCAGTAAAATACCGTCATTATCTGATGACATCTATTTATGGTTGGGTATAAACTCTTTTTGATTCCTGAAACAACTACTGTGATCTAATCATTTTCACTCCAAAGGATATTAGACTCCTAGTTATCATTGTAAGCTGATTATATATGTGCTTTATGGGGGATTGATAGTTTTCATAACACGTAGTTGTATTGGAATCACTGCAGCTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTCTTAGTTCCAATCATCTTCAAAGCTTTCAGTTGCAGCTTTCCTTTTTTCATTTTTTTCACTATTTTCTAGGTTCGTGAGATGGAGAAAATGACTAATAGGAAAGTATTACTAGAATCTCAATTTAGCCAGTAATACTGTGTTTCTTTTTTAATTGGAGGAGAACACCAATGATGAGATGGTCGCGATACTATTCCCATAATCGTTTGGTGGACAATATGGATGGAAAGAAACATACTGATTTTTTGAAGACAAACATTGCAACATGCATAATCTTAAACAAAATTGTATTTCTTTGCTAGATTTTTTGGTGCAACATGGCCATTATAAATGATGTAGATTCCATGCTGCATATGATTGGGGCTTTGCACACTTTTTAATTTTTAACACACCATCTTACTGTTGTTTACCATTTATAGAATATCATTACTTCTCAATAATTAAAAATAATGACATTATTGGTGTAAAAAGAGCTATAAGCAATTATGAAGTAAATTGATCAAATATTAATTCTTTTTTATTGAATTAATCAAAATAACATTTTTATGCAGATAATTATTTTGTATGCTTTCCATCTTTTTGCATGTATTTTATTTTATTTTTTGAAATAAGAGTTTTGCATGTATTTCTTCACCTAAGGGAATAGGACAATCGAAATTTATATTGTATTTAGAGTTTGTTTGGTATTATACATAAACACACTTCAAACATGGTATCAGGCCAGACAGAGGTCCTGAGATCGATCTCACCACCACCTAAATTAAAAAGAATTTCCACGTGCTAGGCCCATGAAAAAGAATCAGGCCGCACGTGAGGGAGCGTGTTGAGAATATTACTAACAAGTAAAAACTGTGATCTTTCTAACAGCTTATGTTTTTAGATGAGATGGTTACACACTTCAATAGATACCTTACCTCCTTTATGTTATTCTATTGAGACAATCTATCATGTTGTTGAACAGTATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGA</genome_strand>
        <mrna_strand>ACTTGTTCCTCTCCCGCCGGCTATCCAGTT.................................................................................................................................GATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAA-CAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TANTATTGATGATGAAACTCTTTTGG-AATACTTCACCCTGCCATATTGGGTATATTGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440439" ref_strand="+" ref_description="SGN-E440439 [cSTA-16-F14]">
      <seq>gattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcattgatttgataatgagatgcgtattggatcctggtgacaagattgttgactgcccacccactttcacaatgtatgaatttgatgcagctgtaaatggagcaggtgtcatcaaggtgcctaggaacccagactttagcctggatgtagaacggattgccgaagtggttgaacttgagaaaccgaagtgcatatttctgacatcacctaataatcctgatgggagtataattgatgatgaaactcttttgaaaatacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="22184" stop="19323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21884" g_stop="21814" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21690" g_stop="21593" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="169" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20828" g_stop="20720" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="278" r_length="109" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19657" g_stop="19623" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="313" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E440439" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21884" e_stop="21814"/>
          <exon e_start="21690" e_stop="21593"/>
          <exon e_start="20828" e_stop="20720"/>
          <exon e_start="19657" e_stop="19623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGGGTAAATATGATTTTTAATTATGTTTCGGAGTTCCTCATTATAATCATACTGAGTCTTAGATCCTTTCTCTTCTAGAAGAGTCTTGGGACTTGGACTTGTTTTGGTGCAATAAATCATCTTTGGTTGAATATATTATGGGAAATCTTGGAAAAATAAATGGTATACAGAAGAAGTTAGGAACTAAATGTAAGAGAGAGAGAGAGAGAAATAGATAAGATTCTATTGTCTCTTAGTTCGAGCAATAACTCGGTCTTACATTAGATAAAGCACTCTGACATTCTTATCAATTTTTTTGATCAGTAAAATACCGTCATTATCTGATGACATCTATTTATGGTTGGGTATAAACTCTTTTTGATTCCTGAAACAACTACTGTGATCTAATCATTTTCACTCCAAAGGATATTAGACTCCTAGTTATCATTGTAAGCTGATTATATATGTGCTTTATGGGGGATTGATAGTTTTCATAACACGTAGTTGTATTGGAATCACTGCAGCTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTCTTAGTTCCAATCATCTTCAAAGCTTTCAGTTGCAGCTTTCCTTTTTTCATTTTTTTCACTATTTTCTAGGTTCGTGAGATGGAGAAAATGACTAATAGGAAAGTATTACTAGAATCTCAATTTAGCCAGTAATACTGTGTTTCTTTTTTAATTGGAGGAGAACACCAATGATGAGATGGTCGCGATACTATTCCCATAATCGTTTGGTGGACAATATGGATGGAAAGAAACATACTGATTTTTTGAAGACAAACATTGCAACATGCATAATCTTAAACAAAATTGTATTTCTTTGCTAGATTTTTTGGTGCAACATGGCCATTATAAATGATGTAGATTCCATGCTGCATATGATTGGGGCTTTGCACACTTTTTAATTTTTAACACACCATCTTACTGTTGTTTACCATTTATAGAATATCATTACTTCTCAATAATTAAAAATAATGACATTATTGGTGTAAAAAGAGCTATAAGCAATTATGAAGTAAATTGATCAAATATTAATTCTTTTTTATTGAATTAATCAAAATAACATTTTTATGCAGATAATTATTTTGTATGCTTTCCATCTTTTTGCATGTATTTTATTTTATTTTTTGAAATAAGAGTTTTGCATGTATTTCTTCACCTAAGGGAATAGGACAATCGAAATTTATATTGTATTTAGAGTTTGTTTGGTATTATACATAAACACACTTCAAACATGGTATCAGGCCAGACAGAGGTCCTGAGATCGATCTCACCACCACCTAAATTAAAAAGAATTTCCACGTGCTAGGCCCATGAAAAAGAATCAGGCCGCACGTGAGGGAGCGTGTTGAGAATATTACTAACAAGTAAAAACTGTGATCTTTCTAACAGCTTATGTTTTTAGATGAGATGGTTACACACTTCAATAGATACCTTACCTCCTTTATGTTATTCTATTGAGACAATCTATCATGTTGTTGAACAGTATAATTGATGATGAAACTCTTTTGGAAATACTTC</genome_strand>
        <mrna_strand>GATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGCGTATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTAGGAACCCAGACTTTAGCCTGGATGTAGAACGGATTGCCGAAGTGGTTGAACTTGAGAAACCGAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTGATGATGAAACTCTTTTGAAAATACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478345" ref_strand="+" ref_description="SGN-E478345 [cSTD-4-O13]">
      <seq>caaaacttgttcctctcccgccggcaatccagttgaaataacaagtttcgattgatgggtgtgattgaattatgcaacatttcatctatttgcattggtagagcaaaacccagttctttaatcgaaggaaatcggaggaggagaattacttgtatggcctcttcagtgtcagtgcaagaagaggagagtcatcagcagaaacaatgtgttaatgggggttcttttattcggacccatcttcttaaattgtccccttatcaacccattttgccatttgaggtgttgtccactcgtcttggtagaaagccagaggacattgttaagttagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttgggggctatgaaatttccatatatttatcctgatcctgaaagccgtacgttgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcattgatttgataatgagatgcgtattggatcctggtgacaagattgttgactgcccacccactttcacaatgtatgaatttgatgcagctgtaaatggagcangtgtcatcaaggtgcctaggaacccagactttagcctggatgtagaacggattgccgaagtggttgaacttgagaaaccgaagtgcatatttctgacatcacctaataatcctgatgggagtataattgatgatgaaactcttttgaaaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24953" stop="19325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24653" g_stop="24620" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24619" i_stop="24491" i_length="129">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.847" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24490" g_stop="24246" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="279" r_length="245" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="363" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21968" g_stop="21814" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="518" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21690" g_stop="21593" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="616" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.839" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20828" g_stop="20720" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="725" r_length="109" r_score="0.954"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19657" g_stop="19625" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="758" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E478345" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24653" e_stop="24620"/>
          <exon e_start="24490" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21814"/>
          <exon e_start="21690" e_stop="21593"/>
          <exon e_start="20828" e_stop="20720"/>
          <exon e_start="19657" e_stop="19625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTTGTTCCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGGGTAAATATGATTTTTAATTATGTTTCGGAGTTCCTCATTATAATCATACTGAGTCTTAGATCCTTTCTCTTCTAGAAGAGTCTTGGGACTTGGACTTGTTTTGGTGCAATAAATCATCTTTGGTTGAATATATTATGGGAAATCTTGGAAAAATAAATGGTATACAGAAGAAGTTAGGAACTAAATGTAAGAGAGAGAGAGAGAGAAATAGATAAGATTCTATTGTCTCTTAGTTCGAGCAATAACTCGGTCTTACATTAGATAAAGCACTCTGACATTCTTATCAATTTTTTTGATCAGTAAAATACCGTCATTATCTGATGACATCTATTTATGGTTGGGTATAAACTCTTTTTGATTCCTGAAACAACTACTGTGATCTAATCATTTTCACTCCAAAGGATATTAGACTCCTAGTTATCATTGTAAGCTGATTATATATGTGCTTTATGGGGGATTGATAGTTTTCATAACACGTAGTTGTATTGGAATCACTGCAGCTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTCTTAGTTCCAATCATCTTCAAAGCTTTCAGTTGCAGCTTTCCTTTTTTCATTTTTTTCACTATTTTCTAGGTTCGTGAGATGGAGAAAATGACTAATAGGAAAGTATTACTAGAATCTCAATTTAGCCAGTAATACTGTGTTTCTTTTTTAATTGGAGGAGAACACCAATGATGAGATGGTCGCGATACTATTCCCATAATCGTTTGGTGGACAATATGGATGGAAAGAAACATACTGATTTTTTGAAGACAAACATTGCAACATGCATAATCTTAAACAAAATTGTATTTCTTTGCTAGATTTTTTGGTGCAACATGGCCATTATAAATGATGTAGATTCCATGCTGCATATGATTGGGGCTTTGCACACTTTTTAATTTTTAACACACCATCTTACTGTTGTTTACCATTTATAGAATATCATTACTTCTCAATAATTAAAAATAATGACATTATTGGTGTAAAAAGAGCTATAAGCAATTATGAAGTAAATTGATCAAATATTAATTCTTTTTTATTGAATTAATCAAAATAACATTTTTATGCAGATAATTATTTTGTATGCTTTCCATCTTTTTGCATGTATTTTATTTTATTTTTTGAAATAAGAGTTTTGCATGTATTTCTTCACCTAAGGGAATAGGACAATCGAAATTTATATTGTATTTAGAGTTTGTTTGGTATTATACATAAACACACTTCAAACATGGTATCAGGCCAGACAGAGGTCCTGAGATCGATCTCACCACCACCTAAATTAAAAAGAATTTCCACGTGCTAGGCCCATGAAAAAGAATCAGGCCGCACGTGAGGGAGCGTGTTGAGAATATTACTAACAAGTAAAAACTGTGATCTTTCTAACAGCTTATGTTTTTAGATGAGATGGTTACACACTTCAATAGATACCTTACCTCCTTTATGTTATTCTATTGAGACAATCTATCATGTTGTTGAACAGTATAATTGATGATGAAACTCTTTTGGAAATACT</genome_strand>
        <mrna_strand>CAAAACTTGTTCCTCTCCCGCCGGCAATCCAGTT.................................................................................................................................GAAATAACAAGTTTCGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTTGCATTGGTAGAGCAAAACCCAGTTCTTTAATCGAAGGAAATCGGAGGAGGAGAATTACTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGTCATCAGCAGAAACAATGTGTTAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTATCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTCCACTCGTCTTGGTAGAAAGCCAGAGGACATTGTTAAGTTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGGCTATGAAATTTCCATATATTTATCCTGATCCTGAAAGCCGTACGTTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGCGTATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCANGTGTCATCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTAGGAACCCAGACTTTAGCCTGGATGTAGAACGGATTGCCGAAGTGGTTGAACTTGAGAAACCGAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTGATGATGAAACTCTTTTGAAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368975" ref_strand="+" ref_description="SGN-E368975 [TUS-25-N5]">
      <seq>acttgttcctctcccgccggctatccagttgatatagcaagttttgattgatgggtgtgattgaattatgcaacatttcatctattagcattgttagagcaaaacccagttctttaaacgaagggaatcggaggaggagaattgcttgtatggcctcttcagtgtcagtgcaagaagaggagagccatcagcagaaacaaggtgtaaatgggggttcttttattcggacccatcttcttaaattgtccccttaccaacccattttgccatttgaggtcttgtccactcgtcttggtagaaagcctgaggacattgtgaaattagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttggggtctatgaaatttccatacatttatcctgatcctgaaagccgcacgctgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcattgatttgataatgagatgcatattggatcctggtgacaagattgttgactgcccacccactttcacaatgtatgaatttgatgcagctgtaaatggagcaggtgtcatcaaggtgcctaggaacccagactttagcctggacgttgaacggattaccgaagtggttgaacgtgagaaaccaaagtgcatatttctgacatcacctaataatcctgatgggagtataattgatgatgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24949" stop="19340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24649" g_stop="24620" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24619" i_stop="24491" i_length="129">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24490" g_stop="24246" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="275" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="359" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21968" g_stop="21814" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="514" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21690" g_stop="21593" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="612" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20828" g_stop="20720" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="721" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19657" g_stop="19640" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="739" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E368975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24649" e_stop="24620"/>
          <exon e_start="24490" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21814"/>
          <exon e_start="21690" e_stop="21593"/>
          <exon e_start="20828" e_stop="20720"/>
          <exon e_start="19657" e_stop="19640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTTCCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGGGTAAATATGATTTTTAATTATGTTTCGGAGTTCCTCATTATAATCATACTGAGTCTTAGATCCTTTCTCTTCTAGAAGAGTCTTGGGACTTGGACTTGTTTTGGTGCAATAAATCATCTTTGGTTGAATATATTATGGGAAATCTTGGAAAAATAAATGGTATACAGAAGAAGTTAGGAACTAAATGTAAGAGAGAGAGAGAGAGAAATAGATAAGATTCTATTGTCTCTTAGTTCGAGCAATAACTCGGTCTTACATTAGATAAAGCACTCTGACATTCTTATCAATTTTTTTGATCAGTAAAATACCGTCATTATCTGATGACATCTATTTATGGTTGGGTATAAACTCTTTTTGATTCCTGAAACAACTACTGTGATCTAATCATTTTCACTCCAAAGGATATTAGACTCCTAGTTATCATTGTAAGCTGATTATATATGTGCTTTATGGGGGATTGATAGTTTTCATAACACGTAGTTGTATTGGAATCACTGCAGCTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAGGTATTGCTACATTGTATTCTTTGTCTATTTCTCATTGTGGTTGTACTTTGCTCCCCTTGATTGTACTGCATGTGAGAGTTTCTCTACCCCCAATCCCACCTGTCTTAGTTCCAATCATCTTCAAAGCTTTCAGTTGCAGCTTTCCTTTTTTCATTTTTTTCACTATTTTCTAGGTTCGTGAGATGGAGAAAATGACTAATAGGAAAGTATTACTAGAATCTCAATTTAGCCAGTAATACTGTGTTTCTTTTTTAATTGGAGGAGAACACCAATGATGAGATGGTCGCGATACTATTCCCATAATCGTTTGGTGGACAATATGGATGGAAAGAAACATACTGATTTTTTGAAGACAAACATTGCAACATGCATAATCTTAAACAAAATTGTATTTCTTTGCTAGATTTTTTGGTGCAACATGGCCATTATAAATGATGTAGATTCCATGCTGCATATGATTGGGGCTTTGCACACTTTTTAATTTTTAACACACCATCTTACTGTTGTTTACCATTTATAGAATATCATTACTTCTCAATAATTAAAAATAATGACATTATTGGTGTAAAAAGAGCTATAAGCAATTATGAAGTAAATTGATCAAATATTAATTCTTTTTTATTGAATTAATCAAAATAACATTTTTATGCAGATAATTATTTTGTATGCTTTCCATCTTTTTGCATGTATTTTATTTTATTTTTTGAAATAAGAGTTTTGCATGTATTTCTTCACCTAAGGGAATAGGACAATCGAAATTTATATTGTATTTAGAGTTTGTTTGGTATTATACATAAACACACTTCAAACATGGTATCAGGCCAGACAGAGGTCCTGAGATCGATCTCACCACCACCTAAATTAAAAAGAATTTCCACGTGCTAGGCCCATGAAAAAGAATCAGGCCGCACGTGAGGGAGCGTGTTGAGAATATTACTAACAAGTAAAAACTGTGATCTTTCTAACAGCTTATGTTTTTAGATGAGATGGTTACACACTTCAATAGATACCTTACCTCCTTTATGTTATTCTATTGAGACAATCTATCATGTTGTTGAACAGTATAATTGATGATGAAAC</genome_strand>
        <mrna_strand>ACTTGTTCCTCTCCCGCCGGCTATCCAGTT.................................................................................................................................GATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTGATGATGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706977" ref_strand="+" ref_description="SGN-E706977 [FA31CH04]">
      <seq>gcaaaacttgttcctctcccgccggcaatccagttgtaccagatatagcaagttttgattgatgggtgtgattgaattatgcaacatttcatctattagcattgttagagcaaaacccagttctttaaacgaagggaatcggaggaggagaattgcttgtatggcctcttcagtgtcagtgcaagaagaggagagccatcagcagaaacaaggtgtaaatgggggttcttttattcggacccatcttcttaaattgtccccttaccaacccattttgccatttgaggtcttgtccactcgtcttggtagaaagcctgaggacattgtgaaattagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttggggtctatgaaatttccatacatttatcctgatcctgaaagccgcacgctgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcattgatttgataatgagatgcgtattggatcctggtgacaagattgttgactgcccacccactttcacaatgtatgaatttgatgcagctgtaaatggagcaggtgtcatcaaggtgcctaggaacccagactttagcctggacgttgaacggattaccgaagtggttgaacgtgaaaaccaaagtgcatatttctgacatcacctaataatcctgatgggagtataattgatgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24954" stop="20416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24654" g_stop="24614" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24613" i_stop="24491" i_length="123">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24490" g_stop="24246" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="286" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="370" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21968" g_stop="21814" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="525" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21690" g_stop="21593" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="623" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20828" g_stop="20720" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="731" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E706977" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24654" e_stop="24614"/>
          <exon e_start="24490" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21814"/>
          <exon e_start="21690" e_stop="21593"/>
          <exon e_start="20828" e_stop="20720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACTTGTTCCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGGGTAAATATGATTTTTAATTATGTTTCGGAGTTCCTCATTATAATCATACTGAGTCTTAGATCCTTTCTCTTCTAGAAGAGTCTTGGGACTTGGACTTGTTTTGGTGCAATAAATCATCTTTGGTTGAATATATTATGGGAAATCTTGGAAAAATAAATGGTATACAGAAGAAGTTAGGAACTAAATGTAAGAGAGAGAGAGAGAGAAATAGATAAGATTCTATTGTCTCTTAGTTCGAGCAATAACTCGGTCTTACATTAGATAAAGCACTCTGACATTCTTATCAATTTTTTTGATCAGTAAAATACCGTCATTATCTGATGACATCTATTTATGGTTGGGTATAAACTCTTTTTGATTCCTGAAACAACTACTGTGATCTAATCATTTTCACTCCAAAGGATATTAGACTCCTAGTTATCATTGTAAGCTGATTATATATGTGCTTTATGGGGGATTGATAGTTTTCATAACACGTAGTTGTATTGGAATCACTGCAGCTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG</genome_strand>
        <mrna_strand>GCAAAACTTGTTCCTCTCCCGCCGGCAATCCAGTTGTACCA...........................................................................................................................GATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGCGTATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGA-AAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369591" ref_strand="+" ref_description="SGN-E369591 [TUS-25-N4]">
      <seq>acttgttcctctcccgccggctatccagttgatatagcaagttttgattgatgggtgtgattgaattatgcaacatttcatctattagcattgttagagcaaaacccagttctttaaacgaagggaatcggaggaggagaattgcttgtatggcctcttcagtgtcagtgcaagaagaggagagccatcagcagaaacaaggtgtaaatgggggttcttttattcggacccatcttcttaaattgtccccttaccaacccattttgccatttgaggtcttgtccactcgtcttggtagaaagcctgaggacattgtgaaattagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttggggtctatgaaatttccatacatttatcctgatcctgaaagccgcacgctgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcattgatttgataatgagatgcatattggatcctggtgacaagattgttgactgcccacccactttcacaatgtatgaatttgatgcagctgtaaatggagcaggtgtcatcaaggtgcctaggaacccagactttagcctggacgttgaacggattaccgaagtggttgaacgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24949" stop="20468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24649" g_stop="24620" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24619" i_stop="24491" i_length="129">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24490" g_stop="24246" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="275" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="359" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21968" g_stop="21814" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="514" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21690" g_stop="21593" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="612" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20828" g_stop="20768" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="673" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E369591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24649" e_stop="24620"/>
          <exon e_start="24490" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21814"/>
          <exon e_start="21690" e_stop="21593"/>
          <exon e_start="20828" e_stop="20768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTTCCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGGGTAAATATGATTTTTAATTATGTTTCGGAGTTCCTCATTATAATCATACTGAGTCTTAGATCCTTTCTCTTCTAGAAGAGTCTTGGGACTTGGACTTGTTTTGGTGCAATAAATCATCTTTGGTTGAATATATTATGGGAAATCTTGGAAAAATAAATGGTATACAGAAGAAGTTAGGAACTAAATGTAAGAGAGAGAGAGAGAGAAATAGATAAGATTCTATTGTCTCTTAGTTCGAGCAATAACTCGGTCTTACATTAGATAAAGCACTCTGACATTCTTATCAATTTTTTTGATCAGTAAAATACCGTCATTATCTGATGACATCTATTTATGGTTGGGTATAAACTCTTTTTGATTCCTGAAACAACTACTGTGATCTAATCATTTTCACTCCAAAGGATATTAGACTCCTAGTTATCATTGTAAGCTGATTATATATGTGCTTTATGGGGGATTGATAGTTTTCATAACACGTAGTTGTATTGGAATCACTGCAGCTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGA</genome_strand>
        <mrna_strand>ACTTGTTCCTCTCCCGCCGGCTATCCAGTT.................................................................................................................................GATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708012" ref_strand="+" ref_description="SGN-E708012 [FA34CD08]">
      <seq>ccttaaattgttcctctcccgccggcaatccagttgtaccagatatagcaagttttgattgatgggtgtgattgaattatgcaacatttcatctattagcattgttagagcaaaacccagttctttaaacgaagggaatcggaggaggagaattgcttgtatggcctcttcagtgtcagtgcaagaagaggagagccatcagcagaaacaaggtgtaaatgggggttcttttattcggacccatcttcttaaattgtccccttaccaacccattttgccatttgaggtcttgtccactcgtcttggtagaaagcctgaggacattgtgaaattagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttggggtctatgaaatttccatacatttatcctgatcctgaaagccgcacgctgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcattgatttgataatgagatgcgtattggatcctggtgacaagattgttgactgcccacccactttcacaatgtatgaatttgatgcagctgtaaatggagcaggtgtcatcaaggtgcctaggaacccagactttagcctggacgttgaacggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24951" stop="20488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24654" g_stop="24614" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24613" i_stop="24491" i_length="123">
            <donor d_prob="0.943" d_score="0.88"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24490" g_stop="24246" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="286" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="370" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21968" g_stop="21814" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="525" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21690" g_stop="21593" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="623" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20828" g_stop="20788" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="664" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E708012" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24654" e_stop="24614"/>
          <exon e_start="24490" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21814"/>
          <exon e_start="21690" e_stop="21593"/>
          <exon e_start="20828" e_stop="20788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACTTGTTCCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGGGTAAATATGATTTTTAATTATGTTTCGGAGTTCCTCATTATAATCATACTGAGTCTTAGATCCTTTCTCTTCTAGAAGAGTCTTGGGACTTGGACTTGTTTTGGTGCAATAAATCATCTTTGGTTGAATATATTATGGGAAATCTTGGAAAAATAAATGGTATACAGAAGAAGTTAGGAACTAAATGTAAGAGAGAGAGAGAGAGAAATAGATAAGATTCTATTGTCTCTTAGTTCGAGCAATAACTCGGTCTTACATTAGATAAAGCACTCTGACATTCTTATCAATTTTTTTGATCAGTAAAATACCGTCATTATCTGATGACATCTATTTATGGTTGGGTATAAACTCTTTTTGATTCCTGAAACAACTACTGTGATCTAATCATTTTCACTCCAAAGGATATTAGACTCCTAGTTATCATTGTAAGCTGATTATATATGTGCTTTATGGGGGATTGATAGTTTTCATAACACGTAGTTGTATTGGAATCACTGCAGCTTGTTAGTTGCTGTTGTTACTTAATCATCAGCATTTCCAATAAATGATGTATTGCTTGGTAATACTGTACTGTGAAACTGTAAAATTTAAGAGAGAAATGGAGTGAATACAGTGAAAATGCAGAGACTCTACATTCAGACAAAGTGGTCTTTAAAACATGGCGCAAAATGAAATAAGCTGAGAATTTCTAATTTTCTTCAATGACATAATTATTGTTGGAACTTCTATCAATACGTTAATCTGTAGCTCTATCAAACTGGCAGTGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATT</genome_strand>
        <mrna_strand>CCTTAAATTGTTCCTCTCCCGCCGGCAATCCAGTTGTACCA...........................................................................................................................GATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGCGTATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415066" ref_strand="+" ref_description="SGN-E415066 [STM-20-P1]">
      <seq>caaaacttgttcctctcccgccggcaatccagttgaaataacaagtttcgattgatgggtgtgattgaattatgcaacatttcatctatttgcattggtagagcaaaacccagttctttaatcgaaggaaatcggaggaggagaattacttgtatggcctcttcagtgtcagtgcaagaagaggagagtcatcagcagaaacaatgtgttaatgggggttcttttattcggacccatcttcttaaattgtccccttatcaacccattttgccatttgaggtgttgtccactcgtcttggtagaaagccagaggacattgttaagttagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttgggggctatgaaatttccatatatttatcctgatcctgaaagccgtacgttgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcattgatttgataatgagatgcgtattggatcctggtgacaagattgttgactgcccacccactttcacaatgtatgaatttgatgcagctgtaaatggagcaggtgtcatcaaagtgcctangaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24953" stop="21293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24653" g_stop="24620" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24619" i_stop="24491" i_length="129">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.847" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24490" g_stop="24246" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="279" r_length="245" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="363" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21968" g_stop="21814" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="518" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21690" g_stop="21593" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="616" r_length="98" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E415066" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24653" e_stop="24620"/>
          <exon e_start="24490" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21814"/>
          <exon e_start="21690" e_stop="21593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTTGTTCCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG</genome_strand>
        <mrna_strand>CAAAACTTGTTCCTCTCCCGCCGGCAATCCAGTT.................................................................................................................................GAAATAACAAGTTTCGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTTGCATTGGTAGAGCAAAACCCAGTTCTTTAATCGAAGGAAATCGGAGGAGGAGAATTACTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGTCATCAGCAGAAACAATGTGTTAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTATCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTCCACTCGTCTTGGTAGAAAGCCAGAGGACATTGTTAAGTTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGGCTATGAAATTTCCATATATTTATCCTGATCCTGAAAGCCGTACGTTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGCGTATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268085" ref_strand="+" ref_description="SGN-E268085 [cLEI-15-N4]">
      <seq>cggaggaggagaattgcttgtatggcctcttcagtgtcagtgcaagaagaggagagccatcagcagaaacaaggtgtaaatgggggttcttttattcggacccatcttcttaaattgtccccttaccaacccattttgccatttgaggtcttgtccactcgtcttggtagaaagcctgaggacattgtgaaattagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttggggtctatgaaatttccatacatttatcctgatcctgaaagccgcacgctgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcattgatttgataatgagatgcatattggatcctggtgacaagattgttgactgcccacccactttcacaatgtatgaatttgatgcagctgtaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24692" stop="21310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24392" g_stop="24246" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="231" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21968" g_stop="21814" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="386" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21690" g_stop="21610" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="467" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E268085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24392" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21814"/>
          <exon e_start="21690" e_stop="21610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGG</genome_strand>
        <mrna_strand>CGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475056" ref_strand="+" ref_description="SGN-E475056 [cSTB-39-I11]">
      <seq>caaaacttgttcctctcccgccggcaatccagttgaaataacaagtttcgattgatgggtgtgattgaattatgcaacatttcatctatttgcattggtagagcaaaacccagttctttaatcgaaggaaatcggaggaggagaattacttgtatggcctcttcagtgtcagtgcaagaagaggagagtcatcagcagaaacaatgtgttaatgggggttcttttattcggacccatcttcttaaattgtccccttatcaacccattttgccatttgaggtgttgtccactcgtcttggtagaaagccagaggacattgttaagttagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttgggggctatgaaatttccatatatttatcctgatcctgaaagccgtacgttgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcattgatttgataatgagatgcgtattggatcctggtgacaagattgttgactgcccacccactttcacaatgtatgaatttgatgcagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24953" stop="21316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24653" g_stop="24620" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24619" i_stop="24491" i_length="129">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.847" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24490" g_stop="24246" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="279" r_length="245" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="363" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21968" g_stop="21814" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="518" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21690" g_stop="21616" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="593" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E475056" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24653" e_stop="24620"/>
          <exon e_start="24490" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21814"/>
          <exon e_start="21690" e_stop="21616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTTGTTCCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGT</genome_strand>
        <mrna_strand>CAAAACTTGTTCCTCTCCCGCCGGCAATCCAGTT.................................................................................................................................GAAATAACAAGTTTCGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTTGCATTGGTAGAGCAAAACCCAGTTCTTTAATCGAAGGAAATCGGAGGAGGAGAATTACTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGTCATCAGCAGAAACAATGTGTTAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTATCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGTCCACTCGTCTTGGTAGAAAGCCAGAGGACATTGTTAAGTTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGGCTATGAAATTTCCATATATTTATCCTGATCCTGAAAGCCGTACGTTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGCGTATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255279" ref_strand="+" ref_description="SGN-E255279 [cLEG-30-C1]">
      <seq>acttgttcctctcccgccggctatccagttgatatagcaagttttgattgatgggtgtgattgaattatgcaacatttcatctattagcattgttagagcaaaacccagttctttaaacgaagggaatcggaggaggagaattgcttgtatggcctcttcagtgtcagtgcaagaagaggagagccatcagcagaaacaaggtgtaaatgggggttcttttattcggacccatcttcttaaattgtccccttaccaacccattttgccatttgaggtcttgtccactcgtcttggtagaaagcctgaggacattgtgaaattagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttggggtctatgaaatttccatacatttatcctgatcctgaaagccgcacgctgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcattgatttgataatgagatgcatattggatcctggtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24949" stop="21369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24649" g_stop="24620" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24619" i_stop="24491" i_length="129">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24490" g_stop="24246" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="275" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="359" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21968" g_stop="21814" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="514" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21690" g_stop="21669" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="536" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E255279" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24649" e_stop="24620"/>
          <exon e_start="24490" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21814"/>
          <exon e_start="21690" e_stop="21669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTTCCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGATCCTGGTGAC</genome_strand>
        <mrna_strand>ACTTGTTCCTCTCCCGCCGGCTATCCAGTT.................................................................................................................................GATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGCATATTGGATCCTGGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470271" ref_strand="+" ref_description="SGN-E470271 [cSTB-17-D23]">
      <seq>caaaacttgtttctctcccgccggcaatccagttggaataaccaagtttcgattgatgggtgtgattgaattatgcaacatttcatctatttgcattggtaaagaaaaacccagttctttaatcgaaggaaatcggaggaggagaattacgtgtatggcctcttcagtgtcagtgcatgaagaggagagtcatcagcagaaacaaggtgtaaatgggggttcttttattcggacccatcttcttaaattgtccccttatcaacccattttgccatttgaggtattgtccactcgtcttggtagaaagccagaggacattgtgaaattagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttgggggctatgaaatttccgtatatttatcctgatcctgaaagccgtacgttgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcatttatttgataatgagatgtgtattggatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24791" stop="21512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24653" g_stop="24620" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24619" i_stop="24491" i_length="129">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.847" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24490" g_stop="24246" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="280" r_length="246" r_score="0.931"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="364" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21968" g_stop="21814" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="519" r_length="155" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21690" g_stop="21675" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="535" r_length="16" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E470271" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24653" e_stop="24620"/>
          <exon e_start="24490" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21814"/>
          <exon e_start="21690" e_stop="21675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTTGTTCCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATAT-AGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGATCCT</genome_strand>
        <mrna_strand>CAAAACTTGTTTCTCTCCCGCCGGCAATCCAGTT.................................................................................................................................GGAATAACCAAGTTTCGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTTGCATTGGTAAAGAAAAACCCAGTTCTTTAATCGAAGGAAATCGGAGGAGGAGAATTACGTGTATGGCCTCTTCAGTGTCAGTGCATGAAGAGGAGAGTCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTATCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGTCCACTCGTCTTGGTAGAAAGCCAGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGGCTATGAAATTTCCGTATATTTATCCTGATCCTGAAAGCCGTACGTTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTTATTTGATAATGAG...........................................................................................................................ATGTGTATTGGATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441211" ref_strand="+" ref_description="SGN-E441211 [cSTA-29-J13]">
      <seq>caaaacttgttcctctcccgccggcaatccagttggaataacaagtttcgattgatgggtgtgattgaattatgcaacatttcatctatttgcattggtaaagcaaaacccagttctttaatcgaaggaaatcggaggaggagaattacatgtatggcctcttcagtgtcagtgcatgaagaggagagtcatcagcagaaacaaggtgtaaatgggggttcttttattcggacccatcttcttaaattgtccccttatcaacccattttgccatttgaggtattgtccactcgtcttggtagaaagccagaggacattgtgaaattagatgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttgggggctatgaaatttccatatatttatcctgatcctgaaagccgtacgttgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcattgatttgataatgagatgtgtattggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24953" stop="21512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24653" g_stop="24620" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24619" i_stop="24491" i_length="129">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.847" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24490" g_stop="24246" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="279" r_length="245" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="363" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21968" g_stop="21814" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="518" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21690" g_stop="21678" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="531" r_length="13" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E441211" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24653" e_stop="24620"/>
          <exon e_start="24490" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21814"/>
          <exon e_start="21690" e_stop="21678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTTGTTCCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTGGAT</genome_strand>
        <mrna_strand>CAAAACTTGTTCCTCTCCCGCCGGCAATCCAGTT.................................................................................................................................GGAATAACAAGTTTCGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTTGCATTGGTAAAGCAAAACCCAGTTCTTTAATCGAAGGAAATCGGAGGAGGAGAATTACATGTATGGCCTCTTCAGTGTCAGTGCATGAAGAGGAGAGTCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTATCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGTCCACTCGTCTTGGTAGAAAGCCAGAGGACATTGTGAAATTAGATGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGGCTATGAAATTTCCATATATTTATCCTGATCCTGAAAGCCGTACGTTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGTGTATTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214925" ref_strand="+" ref_description="SGN-E214925 [cLEC-78-H3]">
      <seq>ggctatccagttgatatagcaagttttgattgatgggtgtgattgaattatgcaacatttcatctattagcattgttagagcaaaacccagttctttaaacgaagggaatcggaggaggagaattgcttgtatggcctcttcagtgtcagtgcaagaagaggagagccatcagcagaaacaaggtgtaaatgggggttcttttattcggacccatcttcttaaattgtccccttaccaacccattttgccatttgaggtcttgtccactcgtcttggtagaaagcctgaggacattgtgaaattagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttggggtctatgaaatttccatacatttatcctgatcctgaaagccgcacgctgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttgcagggtgcggtgcagatgaactcattgatttgataatgagatgcatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24790" stop="21506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24631" g_stop="24620" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24619" i_stop="24491" i_length="129">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24490" g_stop="24246" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="257" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="341" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21968" g_stop="21814" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="496" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21690" g_stop="21681" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="506" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E214925" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24631" e_stop="24620"/>
          <exon e_start="24490" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21814"/>
          <exon e_start="21690" e_stop="21681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAGGTAAATATCATGATTGGACTATCCTTTTATATAAAGTCTAACTAAATGCTGACAAGTGTGTCATTTTGAGATATAGTCCTTGTTTGACTTACAGTTCAGATATTTAATTGTTCTCTGCTGCAGATGCATATTG</genome_strand>
        <mrna_strand>GGCTATCCAGTT.................................................................................................................................GATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG...........................................................................................................................ATGCATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262783" ref_strand="+" ref_description="SGN-E262783 [cLEG-63-J2]">
      <seq>acttgttcctctcccgccggctatccagttgatatagcaagttttgattgatgggtgtgattgaattatgcaacatttcatctattagcattgttagagcaaaacccagttctttaaacgaagggaatcggaggaggagaattgcttgtatggcctcttcagtgtcagtgcaagaagaggagagccatcagcagaaacaaggtgtaaatgggggttcttttattcggacccatcttcttaaattgtccccttaccaacccattttgccatttgaggtcttgtccactcgtcttggtagaaagcctgaggacattgtgaaattagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttggggtctatgaaatttccatacatttatcctgatcctggaagcccgcacgctgcgtgcagctctttgctggagatctggccttgaatctgagtatattcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24949" stop="21553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24649" g_stop="24620" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24619" i_stop="24491" i_length="129">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24490" g_stop="24246" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="275" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="359" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21968" g_stop="21853" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="476" r_length="117" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E262783" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24649" e_stop="24620"/>
          <exon e_start="24490" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTTCCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAG-CCGCACGCTGCGTGCAGCTC-TTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGC</genome_strand>
        <mrna_strand>ACTTGTTCCTCTCCCGCCGGCTATCCAGTT.................................................................................................................................GATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGGAAGCCCGCACGCTGCGTGCAGCTCTTTGCTGGAGA-TCTGGCCTTGAATCTGAGTATATTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366768" ref_strand="+" ref_description="SGN-E366768 [cLPT-6-G1]">
      <seq>cctctcccgccggcaatccagttgtaccagtttctctctctactttctctctctatatattatatatatagtttctctctctactctctctctatatgtaatgatttattgattttgctttgagttttttcaagaaatgaactttgaatgcaggatatagcaagttttgattgatgggtgtgattgaattatgcaacatttcatctattagcattgttagagcaaaacccagttctttaaacgaagggaatcggaggaggagaattgcttgtatggcctcttcagtgtcagtgcaagaagaggagagccatcagcagaaacaaggtgtaaatggggtttcttttattcggacccatcttcttaaattgtccccttatcaacccattttgccatttgaggtcttgtccactcgtcttggtagaaagccagaggacattgtgaaattagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttggggtctatgaaatttccatacatttatcctgatcctgaaagccgcacgctgcgtgcagctcttgctgaagattctggccttgaatctgagtatattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24942" stop="21554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24642" g_stop="24246" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="482" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21968" g_stop="21854" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="597" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E366768" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24642" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAG-TTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTG</genome_strand>
        <mrna_strand>CCTCTCCCGCCGGCAATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTATATATTATATATATAGTTTCTCTCTCTACTCTCTCTCTATATGTAATGATTTATTGATTTTGCTTTGAGTTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGTTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTATCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGTCCACTCGTCTTGGTAGAAAGCCAGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314883" ref_strand="+" ref_description="SGN-E314883 [cTOA-31-I7]">
      <seq>tcctattgcctgcaaaacttgttcctctcccgccggctatccagttgatatagcaagttttgattgatgggtgtgattgaattatgcaacatttcatctattagcattgttagagcaaaacccagttctttaaacgaagggaatcggaggaggagaattgcttgtatggcctcttcagtgtcagtgcaagaagaggagagccatcagcagaaacaaggtgtaaatgggggttcttttattcggacccatcttcttaaattgtccccttaccaacccattttgccatttgaggtcttgtccactcgtcttggtagaaagcctgaggacattgtgaaattagacgctaacgaaaacccctatggacctcctccagaggtaaacgaagctttggggtctatgaaatttccatacatttatcctgatcctgaaagccgcacgctgcgtgcagctcttgctgaagattctggccttgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24965" stop="21567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24665" g_stop="24620" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24619" i_stop="24491" i_length="129">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24490" g_stop="24246" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="291" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22150" g_stop="22067" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="375" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21968" g_stop="21867" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="477" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E314883" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24665" e_stop="24620"/>
          <exon e_start="24490" e_stop="24246"/>
          <exon e_start="22150" e_stop="22067"/>
          <exon e_start="21968" e_stop="21867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTATTGCCTGCAAAACTTGTTCCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAGGTGAGTATTTGGGACCCATTTCTTATTTCGTGTTGTATTGGTGGATTACATTTAGTTTTATTCCATTTATTGGTGAAAGGAGTTTATAAGTTCTATATATCTATATATATATGAATCATTGCACTCAATAGCGTTACCTGTAGTGATACATCTTGCTGATGAGAGGTGGCAGGTATTTCATTGAATTAGTCGAGTTGTGTGAAAGTTTGCTTGGACGCCATGATCAAAAACAAAATATATAGTAGTGTAAAGGGAGGTTCTTTTATTGGGACCCGTCTTCTTAAATTGTCCCCTTATCAACCCATTTGGCTATTTGAGGTGAATTTGTAGGATCCATTTCTTATTTCTTGTTGTATGGCTGATTACATTTAGTTTTATTCTATTTATTGGTGAAAGGAGTTTATATATGAACCAATGCAATCAATAGTGGTACTTGTTGCTAGTTGGAGGTGACAAGTATCCTTAGGAATTAGTTGAGGTGTACAAAAGTTTGCTCGGACACCACGGTCAACAAAAAGAAAAATAGTGTTACCTGCAATAGCGGTACCTGTTGTTGGTGAGAGGTGTTAGGTATTCCGTGCAATTAGTCGAGGTGTGTGAAAGTTGGCTCGCACATCATGTCATCAAAAAAAATAGTCTTACCTATACATGTTGCTAGTGGGAGGTGTTAGGTATATCGTGCAATTAGTTGAGGTCTGTGAAAGCTGACTCGGACACCATGATCATCAAAACAAATAGTGGTACTTGTTGCTAGTGGGCGGTGGCTGGTGTCCCGTGGAACTAATCGAGGTGTGCCAAAGTTGGCTGAAACACCATGGTCATCAAAGAAAAAAATAGTGTTACTTGCAATTACCTTTTAAGTGACTTGTTTTTATCAATATATTCATAGTGCGTAGAACTTAAAGTTGTTACTAATTGTATTGTCGGAGACAATGTACTGATTATAGTCAACCTTCCAGAAATTATATGTTGGTAGAAAATATAAAGAACTTTTTGTACCTTTTTTAAAAAATTATATATTTTTGTATAATATTGGCATGAGATGAGGTTGTATGAAGTAAAATGGTCAGTGAAGATTCATATAGACTGAAGCTAACTGTTGTTGTATAGTTAACCTTATATTAAGTTGAGCGAATCAAGTTAAATAATCAAACCAGAAGGAGGACTTTGAGAACTTAAACTCACTACTGAAAATGCTCAGTGCTGCAGCTAGGACTTTGGGGGTGGGTGGGGGAACTTATATAGGAATATGAATAACATTGCCTTTCTTGGTTGGGCAGAGGGTATTCATTAAAATGGAACCATTGAAACTTGAGAAATTTTAATAGGATACTAACTAAAAATGTGAAACATTAGATTTGTGCAGGGTGGGGGAAGCTGCCTCTATCTGGCACCTGAGCTTTGTCATTTACTATTTTGTCAATGGTTTCAGTGAACCAAATTAAGTATCCTATCTATTTACCTTTATATTGCATTTAGCCTTAGGGACATTAGATGTTCTCCTCTATTTAGTGGGTGATTGTTGTTTTATCAGCTTGGCAGGTTTTGTGAATACAAGTTGTGCTGCCAACTGTTTGCTATTGAAATATGTGATATTTGCAGTAATTAAGTTTACTTAATGAAAAATGTATTTTCTTGGCACAGTATTTCCAGTATATCATCCTTTGGGTCTTGAATTATTTTCTGAGGAAGTACGCTAAACTTTATACAATATAGACCCTTTGAGTCTTGAATCATTAGGCATACAGGAATTAGCCATATCTTCTTTACTTAGCTAGATAGGCCAATGACTACTAGGAGGTTTGTTCTTTACAAAAAAATTTCTTCATTTTTTTTTCTTGTTTCTCCTTTTGTTGATAGACATGAAATGTCAAGTTCTCCCTCTGTCTCTCTGGAAAAAAATATTTAATGTGAGGATTGAATCATCTGTCTTCTATGCAAAGAAAGGTGGTATGAGGAAATTCTAATATATTTGTCGTTTTCCTTCTCGTTTTTATGGGATATAATGAGTTAATAACCACCATATGATTGGTATTTTATGTGTTAGATGTGATATTTTCTTGTTGCATCTAAATAATTGCTTGCACCTATACAGGTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAGGCAAGTTTGTATCTTTTGCAATGCCCACTGTTTAATGGAAAAATATCTGTGTATTTATTTTCCACTTTCTCAATTTTAAGCTGTTGAAGTTCTTGCAGGTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCT</genome_strand>
        <mrna_strand>TCCTATTGCCTGCAAAACTTGTTCCTCTCCCGCCGGCTATCCAGTT.................................................................................................................................GATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG..................................................................................................GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400130" ref_strand="+" ref_description="SGN-E400130 [cSTC-5-A23]">
      <seq>agtctcctttgcctgcaaaacttgttcctctcccgccggcaatccagttgaaataacaagtttcgattgatgggtgtgattgaattatgcaacatttcatctatttgcattggtagagcaaaacccagttctttaatcgaaggaaatcggaggaggagaattacttgtatggcctcttcagtgtcagtgcaagaagaggagagtcatcagcataaacaatgtgttaatgggggttcttttattcggacccattcttcttaaattgtccccttatcaacccattttgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="24969" stop="23952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24669" g_stop="24620" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24619" i_stop="24491" i_length="129">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.847" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24490" g_stop="24252" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="289" r_length="240" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E400130" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24669" e_stop="24620"/>
          <exon e_start="24490" e_stop="24252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCTATTGCCTGCAAAACTTGTTCCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCA-TCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCA</genome_strand>
        <mrna_strand>AGTCTCCT-TTGCCTGCAAAACTTGTTCCTCTCCCGCCGGCAATCCAGTT.................................................................................................................................GAAATAACAAGTTTCGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTTGCATTGGTAGAGCAAAACCCAGTTCTTTAATCGAAGGAAATCGGAGGAGGAGAATTACTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGTCATCAGCATAAACAATGTGTTAATGGGGGTTCTTTTATTCGGACCCATTCTTCTTAAATTGTCCCCTTATCAACCCATTTTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701801" ref_strand="+" ref_description="SGN-E701801 [FA16DH11]">
      <seq>gaggtttttgttgaattggggatcgaatttgatcgaatggaccttctgtgtaaagtctatggcggaacctctgatgaagaagacgacaatggtggaattcaccttcaaagacccattttgccacagccgaaacgagccaaattcgagaattttcatcaagttggcaatcatgtgccactctacaagcctaatccaagtaccaatctcccagcgcaagcttcccttccaggaagatacatttctaagagagagagagctgccatggattcagtggagaaagttccagacctcagcacaacggtttcccctaacagttcaccagttttagggagcattttggattcagttctgccacataatattttgtcagctttgagagatcaaactaaaatctacgggaacatgatccacacgccagaaagactgtctgtagttctagatggacacaaaagatcagttaatgctgtacagtggtctacaagtcatgctcaccttttagtatctgccggaatggatcaaactgtctgtatatggaatgtgtggagcagagatcagaagaaagcacgtgtacttaattgtcacaaagcggctgtcaaagatgtgaagtggtcgccatatggtctatttgtgctctcttgtggatatgactgcacatcaaggttgattgatgttgaaaaaggaactgaaacccaggttttcaatgaggatcaagttgttggagtggtaaaattccatccaaataattataatctcttttctctctggaggttcgaaaggtcaccttaaaatatgggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="31418" stop="26527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31121" g_stop="30801" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30800" i_stop="28066" i_length="2735">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28065" g_stop="27901" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="487" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27900" i_stop="27136" i_length="765">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27135" g_stop="26827" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="797" r_length="310" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E701801" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31121" e_stop="30801"/>
          <exon e_start="28065" e_stop="27901"/>
          <exon e_start="27135" e_stop="26827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GA-ATTTTTGTTGAATTGGGGATCGAATTTGATGGAATGGACCTTCTGTGTAAAGTCTATGGCGGAACCTCTGATGAAGAAGACGACAATGGTGGAATTCACCTTCAAAGACCCATTTTGCCACAGCCGAAACGAGCCAAATTCGAGAATTTTCATCAAGTTGGCAATCATGTGCCACTCTACAAGCCTAATCCAAGTACCAATCTCCCAGCGCAAGCTTCCCTTCCAGGAAGATACATTTCTAAGAGAGAGAGAGCTGCCATGGATTCAGTGGAGAAAGTTCCAGACCTCAGCACAACGGTTTCCCCTAACAGTTCACCAGGTTTTGCAATTGCTATCTTGTCCCTCTCTCTCTTTTTATTTTACTTAAAACTGAGAACTTATTATGAGCTCTGTGTTTGGTTGGTGTTGAAAAATTTCAGATAAGTTAAGTATATGATACTCTTTTGTTTAAAAGAAGATGATTTTGTTCAAAAGGGGATGGTTTTAGGATTGAGACATGGAAGTAATGCGAGTAACAACTTAGGGAGTGTCATTGTTGTCGAATACGTGCTTAAGCCCCATAGAGTGTCAAAACGTATCAAGTTTCTAAGACATACTTTCCCTTGCCAATAAATTGAGAATTTACTATTATCATAAGAAAAGATTCAAATTTTTTTCCCATATATTTCTCATTCATGTTTAGAATTATTACTCTTGGACTAAACATCTATATATATATGTGTGTGTGTGTGTGTGTGTATTGTTTCTTCCTTTATGGTTGGTTTCATGCTTATCTTTGTACTTGAAGTCCTAATAAATCTTAGAGATTTTCTGCGCTTTTTGCTTGTGATAACACTGGGGTTGTTCGGTATGAAGGAAAATGTTTTTCAGGTATGAAGGAAAATGTTGGTTACTCATTTTCTTGTGTTCGGCATGTAAATAAAAAATATTTGTACATAATCTAGTCAAATACTATAGGAGGTAGGAGTGGAGATTAGGGCTATGGGCTGAAGGTGAAAAATGAAGTGTGTTGGAGGGTGGGGCGTGGGGAGAATACAAATATACAATCAATTTGGAATGTCACTTGCAGAACTTGTTTTCTCTACATCCATTAGGGAAGTCATTTTCTTCGTCTTTAAGGAACTTTTTTTCTAGAGAAATGTTCTCCAAAAATTTTACCGACCAAACATGGAAAAATTGAAAAACATTTGTTGGAAAATGTTTTTCTCCATAACAAACACACCCTTAGAGGTCCAAGTTCCTATCACAACTGCAACAGTTAAGCATTTTGGATAGTATCTATGTTGAAGTTTGATATGCTCTGATGAGATTGTAAGTGACCTATGCTCTTCATTTATTTGATGATGAGCCTTTTGTGAATACACAATTACCTTTGTCTCAAAAAGTTTTCTTTAAAAAAGTGTACTTGAAGTTGAAGTGAAAAAAAATGTAGAAGTTGGAGTTATTTCTGGACATGAAGTTCACTTGGAAAGAAAAAGCTAGTTACATACACCTTCATGTCAATATTTCGATATTTCATGTGAGGTTCAATATTTTCAAATACTCATTGTCAAACTAGTATTTGCAAATACTGGAACAATACTAGACGAATATTTATGCCTAAAAGGCTGAAATTTGTCATCCTTTTCCTTTTGAAGAGGGTGAATTTGATGTGAAGGGAATGGTTTAGTGCTTAATTTACAGCTGCAACAAAAGTGTGAGGCAATCTGCTCTGACCATGATAAATAGGATTACCCGGACCTGTGCTTGTGTGTTGTATGTAACAGGCTTGTGGATTGTTGAGGTGCTTGCATATTGATGTAATACCACTTTCATTTTTGAAAAAGTACTAAATAAGAAGCCAATGGATTTAAAATGTTTAATTGTTGCCAAAGAGACCCCTTCAATTTTTCTATGCAAGGATAAGTCATTTATTACTAATGAGAAGCATATTCAGAACCCTTTTATTTATCCGAAGAACTAGGGAACTGAAGAGGTCCTGTTGGAGAAGAGATGCATCATGTTAAGAGGGAAAGAAAAGAGAGGACTATCTTTGATGTTTTGGCAGATTGATGCATTATTGAATGAAGATGAGCTCTTCCAGACATTCTGTGCTTTTATTGTTGCTTATTACAGCTGAAACCTAATTAACCAGCAACCTTTATATTGCTGATTGCTTTATGCTTAACTATCATGTCACCAGCTTAAATTGTGAACTCATGACCCAAAGTTTGTTTTGGATTCGATGTTCAAAAAAAAGGTTTGTTGTGTATAAGCTTACAACTAATACAGACAGTCAGTCCTCCACTTGAGATAACTCATCCCTTCACTTAGCTGCTACCTTGCGTTAGTGGAGCTGTTTGTTAAGAATAAGAGTAACTACCCTTGTCCGAACGCTACTGTCAGTGGAAATCAAGAAGGAATTTGTAACACGATAAGTTATATCAGTGGTTGATTTGCCGAAATCTAGTTTGTAAGATGTGGCTAGCAGTGCAATGGCAGATCATCATTTAGCACCATTTTTGGAAAAATGGCTAAATTGGCTTGTGAGTTCAGTCATCCTTCAATTAACTCCACAGAAATTCCCTTCCCTACTCTTTTTGGCTTGTGAAGTGGTTCATCTTTTAATAAACTCCACAGCAGTCCCTTACCTATAGTGAACTTTTTCCCTTTTTTATTCTCTTGCTATTAAATTCATATAACATTATCTAAACAGTTGCTTTAGTGTCAAGAGTCTCAGTAGAAAAATTACTGGACCCAACTATTGACGTTTGGCAAATATTCACCTTAGGGAAGGACGTTTGTTGAGCAACTCATCAGTTTTTCATTGCAATTTATGTCTATGCGAGGAAGATCTTTAGTTTTGAGAGGATGTCACTGTTGCCCATCAGAGTGTCAAAGGAGGCTCAACAAGTCTTACTAACATGAAAGCAACTAGGAACCTCTCGGCAACTTTTCTTGTTGTGCAAATTTATAGTAATATTTTGTGCAATAGTTAGCACCTTTTCTCTCGATCTTCTGCATTCAATTTGAATTTTATCTGCAACTGATGATTTGGAGTTTTTTTGTCTTTAGTTTTAGGGAGCATTTTGGATTCAGTTCTGCCACATAATATTTTGTCAGCTTTGAGAGATCAAACTAAAATCTACGGGAACATGATCCACACGCCAGAAAGACTGTCTGTAGTTCTAGATGGACACAAAAGATCAGTTAATGCTGTACAGTGGTCTACAAGTCATGGTGAGTGTTTAAACCCTGCCAAAGTTGTAAATCCTATTTATCAAAATTGGCATATAATTTTTTAGCATGGATGCCTCCGGATCCTGATGATTACCTGCTGGCTGCCGCCATTGATGTTGAAATAGATTCAGAACTCCCTTGTGGTTTCAATCCCTACAAATTAGACTTCACTGTGAAACTGCATCAGTTCATGCATTTAGTAGGATGAGACTGGATCAGTTACATGAACTGCTCCAGATATATGCTTGGGCCCTGGTGTACTTTGTCTGTTTACTTCTGATATCTAGAAAGGTAGATACTTTTTCCAAATTTATTGAAAGAAGGACCAGATGGATGTAGTTTTCTTGTTCTTTACCAAAACAATAAGGAAAAGAAGTAATTACTCAAAAAGAATCAAGACTTTGTTGAAAAAAATATAAAGTGGAAAATAAATGAATGGCTAAATTTTTGAAGTTCTGTGCTATCGTAGGAAAAAAATAATTAACTTTAGCCTTTTCAAAAACCAAGAAGAAAAACTTTTGCATTAGGTATTCAAAAACCAAGAAAAAAAATCTCTCTTTAGGTATCAAAATACCAACAATGCTTTGTTAACCAAGCACAATAATTTTCACTATTTTACAATGATGTGAGTCAATGATTCGCTTGATTACTTACGTGAAATCATTTAGTTGTGAAATCTATAATGTTAATTGTATATTTTCTGATTTGTGATGCTTTGCTGATTCAATAGCATACTTGTATTCATGTATGCTATTCACCATGCAGCTCACCTTTTAGTATCTGCCGGAATGGATCAAACTGTCTGTATATGGAATGTGTGGAGCAGAGATCAGAAGAAAGCACGTGTACTTAATTGTCACAAAGCGGCTGTCAAAGATGTGAAGTGGTCGCCATATGGTCTATTTGTGCTCTCTTGTGGATATGACTGCACATCAAGGTTGATTGATGTTGAAAAAGGAACTGAAACCCAGGTTTTCAATGAGGATCAAGTTGTTGGAGTGGTAAAATTCCATCCAGATAATTATAATCTC-TTTCTCTCTGGAGGTTCGAAAGGTCACCTTAAAATATGGGATA</genome_strand>
        <mrna_strand>GAGGTTTTTGTTGAATTGGGGATCGAATTTGATCGAATGGACCTTCTGTGTAAAGTCTATGGCGGAACCTCTGATGAAGAAGACGACAATGGTGGAATTCACCTTCAAAGACCCATTTTGCCACAGCCGAAACGAGCCAAATTCGAGAATTTTCATCAAGTTGGCAATCATGTGCCACTCTACAAGCCTAATCCAAGTACCAATCTCCCAGCGCAAGCTTCCCTTCCAGGAAGATACATTTCTAAGAGAGAGAGAGCTGCCATGGATTCAGTGGAGAAAGTTCCAGACCTCAGCACAACGGTTTCCCCTAACAGTTCACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGGGAGCATTTTGGATTCAGTTCTGCCACATAATATTTTGTCAGCTTTGAGAGATCAAACTAAAATCTACGGGAACATGATCCACACGCCAGAAAGACTGTCTGTAGTTCTAGATGGACACAAAAGATCAGTTAATGCTGTACAGTGGTCTACAAGTCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACCTTTTAGTATCTGCCGGAATGGATCAAACTGTCTGTATATGGAATGTGTGGAGCAGAGATCAGAAGAAAGCACGTGTACTTAATTGTCACAAAGCGGCTGTCAAAGATGTGAAGTGGTCGCCATATGGTCTATTTGTGCTCTCTTGTGGATATGACTGCACATCAAGGTTGATTGATGTTGAAAAAGGAACTGAAACCCAGGTTTTCAATGAGGATCAAGTTGTTGGAGTGGTAAAATTCCATCCAAATAATTATAATCTCTTTTCTCTCTGGAGGTTCGAAAGGTCACCTTAAAATATGGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312062" ref_strand="+" ref_description="SGN-E312062 [cTOA-11-M9]">
      <seq>tcgattgaatttttgttgaattggggatcgaatttgatggaatggaccttctgtgtaaagtctatggcggaacctctgatgaagaagacgacaatggtggaattcaccttcaaagacccattttgccacagccgaaacgagccaaattcgagaattttcatcaagttggcaatcatgtgccactctacaagcctaatccaagtaccaatctcccagcgcaagcttcccttccaggaagatacatttctaagagagagagagctgccatggattcagtggagaaagttccagacctcagcacaacggtttcccctaacagttcaccagttttagggagcattttggattcagttctgccacataatattttgtcagctttgagagatcaaactaaaatctacgggaacatgatccacacgccagaaagactgtctgtagttctagatggacacaaaagatcagttaatgctgtacagtggtctacaagtcatgctcaccttttagtatctgccggaatggatcaaactgtctgtatatggaatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="31427" stop="26782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31127" g_stop="30801" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30800" i_stop="28066" i_length="2735">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28065" g_stop="27901" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="492" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27900" i_stop="27136" i_length="765">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27135" g_stop="27082" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="546" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E312062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31127" e_stop="30801"/>
          <exon e_start="28065" e_stop="27901"/>
          <exon e_start="27135" e_stop="27082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTGAATTTTTGTTGAATTGGGGATCGAATTTGATGGAATGGACCTTCTGTGTAAAGTCTATGGCGGAACCTCTGATGAAGAAGACGACAATGGTGGAATTCACCTTCAAAGACCCATTTTGCCACAGCCGAAACGAGCCAAATTCGAGAATTTTCATCAAGTTGGCAATCATGTGCCACTCTACAAGCCTAATCCAAGTACCAATCTCCCAGCGCAAGCTTCCCTTCCAGGAAGATACATTTCTAAGAGAGAGAGAGCTGCCATGGATTCAGTGGAGAAAGTTCCAGACCTCAGCACAACGGTTTCCCCTAACAGTTCACCAGGTTTTGCAATTGCTATCTTGTCCCTCTCTCTCTTTTTATTTTACTTAAAACTGAGAACTTATTATGAGCTCTGTGTTTGGTTGGTGTTGAAAAATTTCAGATAAGTTAAGTATATGATACTCTTTTGTTTAAAAGAAGATGATTTTGTTCAAAAGGGGATGGTTTTAGGATTGAGACATGGAAGTAATGCGAGTAACAACTTAGGGAGTGTCATTGTTGTCGAATACGTGCTTAAGCCCCATAGAGTGTCAAAACGTATCAAGTTTCTAAGACATACTTTCCCTTGCCAATAAATTGAGAATTTACTATTATCATAAGAAAAGATTCAAATTTTTTTCCCATATATTTCTCATTCATGTTTAGAATTATTACTCTTGGACTAAACATCTATATATATATGTGTGTGTGTGTGTGTGTGTATTGTTTCTTCCTTTATGGTTGGTTTCATGCTTATCTTTGTACTTGAAGTCCTAATAAATCTTAGAGATTTTCTGCGCTTTTTGCTTGTGATAACACTGGGGTTGTTCGGTATGAAGGAAAATGTTTTTCAGGTATGAAGGAAAATGTTGGTTACTCATTTTCTTGTGTTCGGCATGTAAATAAAAAATATTTGTACATAATCTAGTCAAATACTATAGGAGGTAGGAGTGGAGATTAGGGCTATGGGCTGAAGGTGAAAAATGAAGTGTGTTGGAGGGTGGGGCGTGGGGAGAATACAAATATACAATCAATTTGGAATGTCACTTGCAGAACTTGTTTTCTCTACATCCATTAGGGAAGTCATTTTCTTCGTCTTTAAGGAACTTTTTTTCTAGAGAAATGTTCTCCAAAAATTTTACCGACCAAACATGGAAAAATTGAAAAACATTTGTTGGAAAATGTTTTTCTCCATAACAAACACACCCTTAGAGGTCCAAGTTCCTATCACAACTGCAACAGTTAAGCATTTTGGATAGTATCTATGTTGAAGTTTGATATGCTCTGATGAGATTGTAAGTGACCTATGCTCTTCATTTATTTGATGATGAGCCTTTTGTGAATACACAATTACCTTTGTCTCAAAAAGTTTTCTTTAAAAAAGTGTACTTGAAGTTGAAGTGAAAAAAAATGTAGAAGTTGGAGTTATTTCTGGACATGAAGTTCACTTGGAAAGAAAAAGCTAGTTACATACACCTTCATGTCAATATTTCGATATTTCATGTGAGGTTCAATATTTTCAAATACTCATTGTCAAACTAGTATTTGCAAATACTGGAACAATACTAGACGAATATTTATGCCTAAAAGGCTGAAATTTGTCATCCTTTTCCTTTTGAAGAGGGTGAATTTGATGTGAAGGGAATGGTTTAGTGCTTAATTTACAGCTGCAACAAAAGTGTGAGGCAATCTGCTCTGACCATGATAAATAGGATTACCCGGACCTGTGCTTGTGTGTTGTATGTAACAGGCTTGTGGATTGTTGAGGTGCTTGCATATTGATGTAATACCACTTTCATTTTTGAAAAAGTACTAAATAAGAAGCCAATGGATTTAAAATGTTTAATTGTTGCCAAAGAGACCCCTTCAATTTTTCTATGCAAGGATAAGTCATTTATTACTAATGAGAAGCATATTCAGAACCCTTTTATTTATCCGAAGAACTAGGGAACTGAAGAGGTCCTGTTGGAGAAGAGATGCATCATGTTAAGAGGGAAAGAAAAGAGAGGACTATCTTTGATGTTTTGGCAGATTGATGCATTATTGAATGAAGATGAGCTCTTCCAGACATTCTGTGCTTTTATTGTTGCTTATTACAGCTGAAACCTAATTAACCAGCAACCTTTATATTGCTGATTGCTTTATGCTTAACTATCATGTCACCAGCTTAAATTGTGAACTCATGACCCAAAGTTTGTTTTGGATTCGATGTTCAAAAAAAAGGTTTGTTGTGTATAAGCTTACAACTAATACAGACAGTCAGTCCTCCACTTGAGATAACTCATCCCTTCACTTAGCTGCTACCTTGCGTTAGTGGAGCTGTTTGTTAAGAATAAGAGTAACTACCCTTGTCCGAACGCTACTGTCAGTGGAAATCAAGAAGGAATTTGTAACACGATAAGTTATATCAGTGGTTGATTTGCCGAAATCTAGTTTGTAAGATGTGGCTAGCAGTGCAATGGCAGATCATCATTTAGCACCATTTTTGGAAAAATGGCTAAATTGGCTTGTGAGTTCAGTCATCCTTCAATTAACTCCACAGAAATTCCCTTCCCTACTCTTTTTGGCTTGTGAAGTGGTTCATCTTTTAATAAACTCCACAGCAGTCCCTTACCTATAGTGAACTTTTTCCCTTTTTTATTCTCTTGCTATTAAATTCATATAACATTATCTAAACAGTTGCTTTAGTGTCAAGAGTCTCAGTAGAAAAATTACTGGACCCAACTATTGACGTTTGGCAAATATTCACCTTAGGGAAGGACGTTTGTTGAGCAACTCATCAGTTTTTCATTGCAATTTATGTCTATGCGAGGAAGATCTTTAGTTTTGAGAGGATGTCACTGTTGCCCATCAGAGTGTCAAAGGAGGCTCAACAAGTCTTACTAACATGAAAGCAACTAGGAACCTCTCGGCAACTTTTCTTGTTGTGCAAATTTATAGTAATATTTTGTGCAATAGTTAGCACCTTTTCTCTCGATCTTCTGCATTCAATTTGAATTTTATCTGCAACTGATGATTTGGAGTTTTTTTGTCTTTAGTTTTAGGGAGCATTTTGGATTCAGTTCTGCCACATAATATTTTGTCAGCTTTGAGAGATCAAACTAAAATCTACGGGAACATGATCCACACGCCAGAAAGACTGTCTGTAGTTCTAGATGGACACAAAAGATCAGTTAATGCTGTACAGTGGTCTACAAGTCATGGTGAGTGTTTAAACCCTGCCAAAGTTGTAAATCCTATTTATCAAAATTGGCATATAATTTTTTAGCATGGATGCCTCCGGATCCTGATGATTACCTGCTGGCTGCCGCCATTGATGTTGAAATAGATTCAGAACTCCCTTGTGGTTTCAATCCCTACAAATTAGACTTCACTGTGAAACTGCATCAGTTCATGCATTTAGTAGGATGAGACTGGATCAGTTACATGAACTGCTCCAGATATATGCTTGGGCCCTGGTGTACTTTGTCTGTTTACTTCTGATATCTAGAAAGGTAGATACTTTTTCCAAATTTATTGAAAGAAGGACCAGATGGATGTAGTTTTCTTGTTCTTTACCAAAACAATAAGGAAAAGAAGTAATTACTCAAAAAGAATCAAGACTTTGTTGAAAAAAATATAAAGTGGAAAATAAATGAATGGCTAAATTTTTGAAGTTCTGTGCTATCGTAGGAAAAAAATAATTAACTTTAGCCTTTTCAAAAACCAAGAAGAAAAACTTTTGCATTAGGTATTCAAAAACCAAGAAAAAAAATCTCTCTTTAGGTATCAAAATACCAACAATGCTTTGTTAACCAAGCACAATAATTTTCACTATTTTACAATGATGTGAGTCAATGATTCGCTTGATTACTTACGTGAAATCATTTAGTTGTGAAATCTATAATGTTAATTGTATATTTTCTGATTTGTGATGCTTTGCTGATTCAATAGCATACTTGTATTCATGTATGCTATTCACCATGCAGCTCACCTTTTAGTATCTGCCGGAATGGATCAAACTGTCTGTATATGGAATGTGT</genome_strand>
        <mrna_strand>TCGATTGAATTTTTGTTGAATTGGGGATCGAATTTGATGGAATGGACCTTCTGTGTAAAGTCTATGGCGGAACCTCTGATGAAGAAGACGACAATGGTGGAATTCACCTTCAAAGACCCATTTTGCCACAGCCGAAACGAGCCAAATTCGAGAATTTTCATCAAGTTGGCAATCATGTGCCACTCTACAAGCCTAATCCAAGTACCAATCTCCCAGCGCAAGCTTCCCTTCCAGGAAGATACATTTCTAAGAGAGAGAGAGCTGCCATGGATTCAGTGGAGAAAGTTCCAGACCTCAGCACAACGGTTTCCCCTAACAGTTCACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGGGAGCATTTTGGATTCAGTTCTGCCACATAATATTTTGTCAGCTTTGAGAGATCAAACTAAAATCTACGGGAACATGATCCACACGCCAGAAAGACTGTCTGTAGTTCTAGATGGACACAAAAGATCAGTTAATGCTGTACAGTGGTCTACAAGTCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACCTTTTAGTATCTGCCGGAATGGATCAAACTGTCTGTATATGGAATGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726806" ref_strand="+" ref_description="SGN-E726806 [LA12DE05]">
      <seq>cgagttctctggggacccaccctcgtatctgctcgttaggaggaggtccagagcatattgtgaaggaaagaagctgcaaaatttcatgctttcgttatacagatgtagaatcttcttggaaagaattgtttccttcaaaaattcagaagttcaatagctgccgccacctaaatactagaaaatgctgggcagttttttccgctgcaaccggtgatgcaaatgatccggatgactcagaagatagtaagaatcctccagaaaatgaaaatgaatccgtaaataatgaaattttaaggggtaatcttgaaagaatcgtcgggcgggatgactctgcatttagcggaatagaccttgcagctctgataaggaataaatatggaaggtcctatgatgttcaattgattaagaaggaattcatggggaaaaatcttcttgcgttaaacgttatgtggaaatacagggagcagcgatcttttccgttaactgaagaagagtacctactgaggctagatgatgtggcaaacacattgaaatgctggggagctgtttcacatattcgtaatagccttgagaagttgaaagagcggcctcggatagggaaggcagtgagcattttcatcgatatggatgaatccggaggccgtgcaaaggaatggatttacaagtagaccagaacattgtagctcctcaatgttgatagttagcaatacataggtagatatatagtacaaaaaagttgaagagacacttgtattctttattaattactatttcattgtgcagacacaattttttatattggttccatttgatgttaattacacccttctgcagacaacagcatatttgttgtcctgccaattgttatatatgtctccataaatgttggggttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="36305" stop="32014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36005" g_stop="35731" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35628" g_stop="35494" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="410" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34787" g_stop="34731" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="467" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33437" g_stop="33303" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="602" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32607" g_stop="32304" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="906" r_length="304" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E726806" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36005" e_stop="35731"/>
          <exon e_start="35628" e_stop="35494"/>
          <exon e_start="34787" e_stop="34731"/>
          <exon e_start="33437" e_stop="33303"/>
          <exon e_start="32607" e_stop="32304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCCGTAAGTGAAAATGCCTTTGCTGGTGCGATTCCATGGTTGCTAGGCTACACATTTCTTTGATCGTCTAAATGTCGAACAGGCATCCTAACTTTTAGTTTTCAGGTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAGGTACTTGCTTTCCTTATTCTTTAATCATTATTTCGGATGTATTTATAACTTACAACTCCCTCTATTCCAATTTGTTTGCCTTACTTTCCTTATTAGTCCGTTCACAAAAGGATGTCTCTTTCTCTTTTAACAATTCTTTAATTCCAACTTTCCATGTGGCTTGTTTAAGTCCACGAGATTAAAAGACATTTTTCTAAATTCTACATACCTTTAGTTTAAGACTGCAATATTGAAAAGGTTTCAATATAACTACATCTGGTTTAGTTTTCCTTCCTTTCTTAAACTCCGTTACCAAGACAAAATCAGACAAGCAAATCGAAACGGAGGGAGTATGTATTTGATTGACCGTAGAGATACATGCAACATCTCCAAAACTTCAATTTTCAAAAATCTATTGGCTGGTGTAATACTATTTATAAATGAAATTGGCTTAAAATCCCATTAAAAGTGCTTCAAAATAAAGTTCTTTTGATGAGGTTTTGAGTTTTCTGTATCCAATTTTAAAACCTGTTTCTTAGATGACCATTTCTTGATTATTATTTTTTTGTATGCTGTTTTAGATCAACTTAACCAATCAAGCTGACATGAAAAAGATCGTTCAAACAATTAACTATTCCAATTGTTGTTGCAAGTTTTCTTTTTGGCAGTTGTATATATGAACATTGTTTAGATGCTTAACTTGTATCTCTATATCCTCTTTATGTAGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAGGTGAGCTGATCTCTTTAGCATTCGTAATGAGATCGGTTGTTGTCATTAAACTATATCTACCATATGATTTGATGAATATTTTAAAATGTTCCCGGTGTGATACAAAGTTCTCAAACAGAAGTTCAGTAAGTGAAGAACCAAAGTTTGTTTATCTTATACTTTCCACTTGGGAGATGTCAGCACTCTGAAGAACGCACTTCAGTATTCTCTCATCTTTGAAAGCCGTGGCGGAATTTCCTTATTCTTCAGATACTTAAGATCTTATATCAAAGAGTTAATAGTCAAAAACACACCTAAAAAGTATCTCAGTTTTTCGAGTTTTACACCTGAACTATTAGGTAAGCGAGCTTCCTACTTGAACTATCACCAACTATTTATTAAAATACACCTCAACTATTAGATGTTTCCCTTTCCTACCTGAAATATCACCATCGCTCGGGTACACAAAGGGAATAATTGATAGTTGAGGTATGTTTGATAAACAGTTGGTGATAGTTCAAGTAGGAAACTCATCCACTTGATAGTTCAGGTATGAAACTCGAAAAACTTGGATATTTTAGAGTGTTTTTGACTCTTCACTTTATATGAAACAATCTAAATAGCCCCAATAAAGTTTCAGTTTGTCCATCCCTTCTTTTGTTTTCATCTTGGTTTCTCGTCGTGATTGGGGTTGGGCTTTTTGACGGAGCATATACCAGAAGGATGATATCAGATGTGATGCTGCAGCACTTCCCTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCGTCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAACTAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGCTATCTTCTACCTGATCTACTCAAAACTTTAGATTATATTCATCTCATTACCTTCATCACTTTTTGGTTAGTATTAGTTATGCTTGCTTTATAGACAGATCAGTTATAATCTTTTATTTCTTTCTTTTTCGGGATTATGGGTAAGGGTTTGTTAGGTGGGGTGGGATGGGGTGGGGGTGAGGTATGCCTCATCGCATTTTCTGTACACTATGACACTGTTATCCAATGCATATCATACAGGGGTGAACCTATTGTTTAAGCTACGAGTCCAGCTGAACCCTATAGCTTTGGCTTAGACCATGTATGTTTTAACCAGTGAATTAGATGGAATGTTGATAGAACTCCGAATACAAACCCATGATTCTAATTCTAGTTCCGTCTCTGATACCATATGTAGGATACTAACAAAAAAAGAGTAGTGTTATCATTGCTTCCTAGTCCTATTAAGGCTTTGCGTAAACCTCTATCTTAAGCTTATAAGAATCTCGGATATTATCAGTTGTGATGTTTATGAAGCACGTAGATATATCAAATTCTGCATTCCAGAAGTTGTTATGAACTTATAACGACAAATATCATGTCACTCTTGTGCATTATTCTGCCATTCCAAACCGAAAGTTTGTCTCACTATGCTTTTGATCGCGTTCTCTCTTGTTATATACCGCAGGCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAATTGTTTATATATGTCTCCATAAATGTTGTGTTTTTACTTTCTTGAG</genome_strand>
        <mrna_strand>CGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCC......................................................................................................GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAGACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGGTTCCATTTGATGTTAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCCAATTGTTATATATGTCTCCATAAATGTTGGGGTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285004" ref_strand="-" ref_description="SGN-E285004 [cLER-19-G18]">
      <seq>aggaattcatggggaaaaatcttcttgcgttaaacgttatgtggaaatacagggaacaacgtttttttccgttaactgaagaagagtacctactaaggctagataattgtggcaaacacattgaaatgttggggagctgtttcacatattcgtaatagccttgagaagttgaaagagcggcctcggatagggaaggcagtgagcattttcatcgatatggatgaatccggaggccgtgcaaaggaatggatttacaagtagaccagaacattgtagctcctcaatgttgatagttagcaatacataggtagatatatagtacaaaaaagttgaagaaacacttgtattctttattaattactatttcattgtgcagacacaattttttatattgtttccatttgatgtcaattacacccttttgcagacaacagcatatttgttgtcctgcaattgtttatatatgtctccataaatgttgtgtttttaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="35089" stop="32014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34789" g_stop="34731" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293">
            <donor d_prob="0.902" d_score="0.96"/>
            <acceptor a_prob="0.678" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33437" g_stop="33303" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="195" r_length="136" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32607" g_stop="32314" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="489" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="507"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E285004" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285004" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34789" e_stop="34731"/>
          <exon e_start="33437" e_stop="33303"/>
          <exon e_start="32607" e_stop="32314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAGGTGAGCTGATCTCTTTAGCATTCGTAATGAGATCGGTTGTTGTCATTAAACTATATCTACCATATGATTTGATGAATATTTTAAAATGTTCCCGGTGTGATACAAAGTTCTCAAACAGAAGTTCAGTAAGTGAAGAACCAAAGTTTGTTTATCTTATACTTTCCACTTGGGAGATGTCAGCACTCTGAAGAACGCACTTCAGTATTCTCTCATCTTTGAAAGCCGTGGCGGAATTTCCTTATTCTTCAGATACTTAAGATCTTATATCAAAGAGTTAATAGTCAAAAACACACCTAAAAAGTATCTCAGTTTTTCGAGTTTTACACCTGAACTATTAGGTAAGCGAGCTTCCTACTTGAACTATCACCAACTATTTATTAAAATACACCTCAACTATTAGATGTTTCCCTTTCCTACCTGAAATATCACCATCGCTCGGGTACACAAAGGGAATAATTGATAGTTGAGGTATGTTTGATAAACAGTTGGTGATAGTTCAAGTAGGAAACTCATCCACTTGATAGTTCAGGTATGAAACTCGAAAAACTTGGATATTTTAGAGTGTTTTTGACTCTTCACTTTATATGAAACAATCTAAATAGCCCCAATAAAGTTTCAGTTTGTCCATCCCTTCTTTTGTTTTCATCTTGGTTTCTCGTCGTGATTGGGGTTGGGCTTTTTGACGGAGCATATACCAGAAGGATGATATCAGATGTGATGCTGCAGCACTTCCCTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCGTCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAACTAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGA-TGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGCTATCTTCTACCTGATCTACTCAAAACTTTAGATTATATTCATCTCATTACCTTCATCACTTTTTGGTTAGTATTAGTTATGCTTGCTTTATAGACAGATCAGTTATAATCTTTTATTTCTTTCTTTTTCGGGATTATGGGTAAGGGTTTGTTAGGTGGGGTGGGATGGGGTGGGGGTGAGGTATGCCTCATCGCATTTTCTGTACACTATGACACTGTTATCCAATGCATATCATACAGGGGTGAACCTATTGTTTAAGCTACGAGTCCAGCTGAACCCTATAGCTTTGGCTTAGACCATGTATGTTTTAACCAGTGAATTAGATGGAATGTTGATAGAACTCCGAATACAAACCCATGATTCTAATTCTAGTTCCGTCTCTGATACCATATGTAGGATACTAACAAAAAAAGAGTAGTGTTATCATTGCTTCCTAGTCCTATTAAGGCTTTGCGTAAACCTCTATCTTAAGCTTATAAGAATCTCGGATATTATCAGTTGTGATGTTTATGAAGCACGTAGATATATCAAATTCTGCATTCCAGAAGTTGTTATGAACTTATAACGACAAATATCATGTCACTCTTGTGCATTATTCTGCCATTCCAAACCGAAAGTTTGTCTCACTATGCTTTTGATCGCGTTCTCTCTTGTTATATACCGCAGGCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAATTGTTTATATATGTCTCCATAAATGTTGTGTTTTTA</genome_strand>
        <mrna_strand>AGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTTTTTCCGTTAACTGAAGAAGAGTACCTACTAAGGCTAGATAATTGTGGCAAACACATTGAAATGTTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTTTGCAGACAACAGCATATTTGTTGTCCTGCAATTGTTTATATATGTCTCCATAAATGTTGTGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732411" ref_strand="+" ref_description="SGN-E732411 [LB02AD08]">
      <seq>cgagttctctggggacccaccctcgtatctgctcgttaggaggaggtccagagcatattgtgaaggaaagaagctgcaaaatttcatgctttcgttatacagatgtagaatcttcttggaaagaattgtttccttcaaaaattcagaagttcaatagctgccgccacctaaatactagaaaatgctgggcagttttttccgctgcaaccggtgatgcaaatgatccggatgactcagaagatagtaagaatcctccagaaaatgaaaatgaatccgtaaataatgaaattttaaggggtaatcttgaaagaatcgtcgggcgggatgactctgcatttagcggaatagaccttgcagctctgataaggaataaatatggaaggtcctatgatgttcaattgattaagaaggaattcatggggaaaaatcttcttgcgttaaacgttatgtggaaatacagggagcagcgatcttttccgttaactgaagaagagtacctactgaggctagatgatgtggcaaacacattgaaatgctggggagctgtttcacatattcgtaatagccttgagaagttgaaagagcggcctcggatagggaaggcagtgagcattttcatcgatatggatgaatccggaggccgtgcaaaggaatggatttacaagtagaccagaacattgtagctcctcaatgttgatagttagcaatacataggtagatatatagtacaaaaaagttgaagaaacacttgtattctttattaattactatttcattgtgcagacacaattttttatattgtttccatttgatgttaattacacccttctgcagacaacagcatatttgttgtcctgcaatttgttatatatgtctccataaatgttgtggtttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="36305" stop="32014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36005" g_stop="35731" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35628" g_stop="35494" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="410" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34787" g_stop="34731" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="467" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33437" g_stop="33303" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="602" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32607" g_stop="32321" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="889" r_length="287" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="897" polyA_stop="908"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E732411" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36005" e_stop="35731"/>
          <exon e_start="35628" e_stop="35494"/>
          <exon e_start="34787" e_stop="34731"/>
          <exon e_start="33437" e_stop="33303"/>
          <exon e_start="32607" e_stop="32321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCCGTAAGTGAAAATGCCTTTGCTGGTGCGATTCCATGGTTGCTAGGCTACACATTTCTTTGATCGTCTAAATGTCGAACAGGCATCCTAACTTTTAGTTTTCAGGTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAGGTACTTGCTTTCCTTATTCTTTAATCATTATTTCGGATGTATTTATAACTTACAACTCCCTCTATTCCAATTTGTTTGCCTTACTTTCCTTATTAGTCCGTTCACAAAAGGATGTCTCTTTCTCTTTTAACAATTCTTTAATTCCAACTTTCCATGTGGCTTGTTTAAGTCCACGAGATTAAAAGACATTTTTCTAAATTCTACATACCTTTAGTTTAAGACTGCAATATTGAAAAGGTTTCAATATAACTACATCTGGTTTAGTTTTCCTTCCTTTCTTAAACTCCGTTACCAAGACAAAATCAGACAAGCAAATCGAAACGGAGGGAGTATGTATTTGATTGACCGTAGAGATACATGCAACATCTCCAAAACTTCAATTTTCAAAAATCTATTGGCTGGTGTAATACTATTTATAAATGAAATTGGCTTAAAATCCCATTAAAAGTGCTTCAAAATAAAGTTCTTTTGATGAGGTTTTGAGTTTTCTGTATCCAATTTTAAAACCTGTTTCTTAGATGACCATTTCTTGATTATTATTTTTTTGTATGCTGTTTTAGATCAACTTAACCAATCAAGCTGACATGAAAAAGATCGTTCAAACAATTAACTATTCCAATTGTTGTTGCAAGTTTTCTTTTTGGCAGTTGTATATATGAACATTGTTTAGATGCTTAACTTGTATCTCTATATCCTCTTTATGTAGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAGGTGAGCTGATCTCTTTAGCATTCGTAATGAGATCGGTTGTTGTCATTAAACTATATCTACCATATGATTTGATGAATATTTTAAAATGTTCCCGGTGTGATACAAAGTTCTCAAACAGAAGTTCAGTAAGTGAAGAACCAAAGTTTGTTTATCTTATACTTTCCACTTGGGAGATGTCAGCACTCTGAAGAACGCACTTCAGTATTCTCTCATCTTTGAAAGCCGTGGCGGAATTTCCTTATTCTTCAGATACTTAAGATCTTATATCAAAGAGTTAATAGTCAAAAACACACCTAAAAAGTATCTCAGTTTTTCGAGTTTTACACCTGAACTATTAGGTAAGCGAGCTTCCTACTTGAACTATCACCAACTATTTATTAAAATACACCTCAACTATTAGATGTTTCCCTTTCCTACCTGAAATATCACCATCGCTCGGGTACACAAAGGGAATAATTGATAGTTGAGGTATGTTTGATAAACAGTTGGTGATAGTTCAAGTAGGAAACTCATCCACTTGATAGTTCAGGTATGAAACTCGAAAAACTTGGATATTTTAGAGTGTTTTTGACTCTTCACTTTATATGAAACAATCTAAATAGCCCCAATAAAGTTTCAGTTTGTCCATCCCTTCTTTTGTTTTCATCTTGGTTTCTCGTCGTGATTGGGGTTGGGCTTTTTGACGGAGCATATACCAGAAGGATGATATCAGATGTGATGCTGCAGCACTTCCCTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCGTCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAACTAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGCTATCTTCTACCTGATCTACTCAAAACTTTAGATTATATTCATCTCATTACCTTCATCACTTTTTGGTTAGTATTAGTTATGCTTGCTTTATAGACAGATCAGTTATAATCTTTTATTTCTTTCTTTTTCGGGATTATGGGTAAGGGTTTGTTAGGTGGGGTGGGATGGGGTGGGGGTGAGGTATGCCTCATCGCATTTTCTGTACACTATGACACTGTTATCCAATGCATATCATACAGGGGTGAACCTATTGTTTAAGCTACGAGTCCAGCTGAACCCTATAGCTTTGGCTTAGACCATGTATGTTTTAACCAGTGAATTAGATGGAATGTTGATAGAACTCCGAATACAAACCCATGATTCTAATTCTAGTTCCGTCTCTGATACCATATGTAGGATACTAACAAAAAAAGAGTAGTGTTATCATTGCTTCCTAGTCCTATTAAGGCTTTGCGTAAACCTCTATCTTAAGCTTATAAGAATCTCGGATATTATCAGTTGTGATGTTTATGAAGCACGTAGATATATCAAATTCTGCATTCCAGAAGTTGTTATGAACTTATAACGACAAATATCATGTCACTCTTGTGCATTATTCTGCCATTCCAAACCGAAAGTTTGTCTCACTATGCTTTTGATCGCGTTCTCTCTTGTTATATACCGCAGGCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAATTGTTTATATATGTCTCCATAAATGTTGT</genome_strand>
        <mrna_strand>CGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCC......................................................................................................GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTTAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAATTTGTTATATATGTCTCCATAAATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732052" ref_strand="+" ref_description="SGN-E732052 [LB01AF02]">
      <seq>caatctctgctgcttctaccagaatgacgagttctctggggacccaccctcgtatctgctcgttaggaggaggtccagagcatattgtgaaggaaagaagctgcaaaatttcatgctttcgttatacagatgtagaatcttcttggaaagaattgtttccttcaaaaattcagaagttcaatagctgccgccacctaaatactagaaaatgctgggcagttttttccgctgcaaccggtgatgcaaatgatccggatgactcagaagatagtaagaatcctccagaaaatgaaaatgaatccgtaaataatgaaattttaaggggtaatcttgaaagaatcgtcgggcgggatgactctgcatttagcggaatagaccttgcagctctgataaggaataaatatggaaggtcctatgatgttcaattgattaagaaggaattcatggggaaaaatcttcttgcgttaaacgttatgtggaaatacagggagcagcgatcttttccgttaactgaagaagagtacctactgaggctagatgatgtggcaaacacattgaaatgctggggagctgtttcacatattcgtaatagccttgagaagttgaaagagcggcctcggatagggaaggcagtgagcattttcatcgatatggatgaatccggaggccgtgcaaaggaatggatttacaagtagaccagaacattgtagctcctcaatgttgatagttagcaatacataggtagatatatagtacaaaaaagttgaagaaacacttgtattctttattaattactatttcattgtgcagacacaatttttagtattgtttccatttgatgttaattacacccttctgcagacaacagcatatttgtttgtctgcaattgtttatatatgtctcccataatgttggggttttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="38267" stop="32014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37967" g_stop="37946" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37945" i_stop="36011" i_length="1935">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36010" g_stop="35731" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="302" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35628" g_stop="35494" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="437" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34787" g_stop="34731" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="494" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33437" g_stop="33303" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="629" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32607" g_stop="32323" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="914" r_length="285" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="923" polyA_stop="938"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E732052" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37967" e_stop="37946"/>
          <exon e_start="36010" e_stop="35731"/>
          <exon e_start="35628" e_stop="35494"/>
          <exon e_start="34787" e_stop="34731"/>
          <exon e_start="33437" e_stop="33303"/>
          <exon e_start="32607" e_stop="32323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTCTGCTGCTTCTACCAGGTATTTTTCTCTCCCACTTATTTATTATTATTTTTTTGTCAATTTTATCTAATTATCTGTTTTGAATCTTGATTTCTAAAGTTCCCTTTTTTATTTTGTTAGATTTTTTTGATGATTTATAGAAGGGGTTGTTGGAATTTTGGTTTGTTAAGTTTTTTTTGTAATGATGTGTGAAATATAGTTGTATGACAAGGGTTTTTTTTTTCTCATTGTGTATCAAAAGTAAGGTATGTGCTTAGTTAAAAGATACTTGATTTGAGGGGGTTTAGGATGTGAAGTTTATGGATTCGGGATTTTAGCACTTTTTTGAGTTGTTAGGTTGTAAATTTATAGTTTGTAAATATTGAAATGGAGTAGGTGGAGCTAGAAATTTAAAAGTTTTCTTTTTTATAGCTGTGGTGTACTTGCCAACTTGAGTGCTACCTCCCATCGACAACAGGTACATGTAGCTTCGTGTATTGTCTTTACTAGGATTTGAACCTGAAACCTCGCGAGTAGTAGGCCACACACCCTTGGGTACAGCTAGAAAATGAAGTTAATGGAGTTTGAATTTGACACCGAGTATATAACTTGTTTTATGAGTACATGGCTTGATTTACGAAATATTGGAAGTGCTCCTTGGAGAAGGTCCACGTTGATGCATTATGAAGTAGCTCTAGCTTCTTCTTCTTCTTCTTTTTTTCCTTTTTCAAATATAGCTATAATGAATTATGACAAGTTGATGTTGAATCAAATGATGTGCACTACCCTAGCTAAGAATAACTTGTAGCAGCTATAACATCCTACTTTATGAAAGAGCAAGAAAAGTTTGGACTATGGAGGAACAACGGTTTCCATGGTCAGTTTATGCTTATCCAGAAGGTGCAGGGGTTGGTTTCTGGTAGAACGAGCTTATCTTATACATGTTTTGTTGAAGAAGCTATGGTTTCGATCTGATTTGCCTGCACCTTATGTTTGAGCATGCGCTACCATGAACTAAGTACAGGTGTTGGACATCAGGTGTGTGTTATGGCCTTATGGCGTTAAAATTGTCAAAGCTTATGCATATAAAATATGTATATACACACAAAGTGTTGGATGGAGGCGCAAGGATACAATAATAAGCATGAAAATTGATGTGTGTTAGGCTATGTTGCTCCGACTCTCCAAAATATTACCATACTTGTGCTGGATTTTCCAAAAAATGCACTACTTTTGAAGAGTCGGCACACAATCGTCGACATTTTCAAAGAGTCCGAGCGACATTGCTGCTTAGCATCTTCTTGATACATAGGGTGAATGGCTTTTAGACTCATGTATAGTTAGTGTAACCTAAAAATAATTCTTTTGATGAGTCTATACTGAGTAGTCCAGAGTTTATTCTTGTTGAAATATCTATAACTTCAGTGCTTAAGCGCGCCTTTGAAAATCTTGTTATCAACCCTTGTTTACCCCTCTTTCTTTAGTTAATTCATTTCAATATACTAGCTATCTAATATCTTCTTATTATGCCTACGATTGATTAAGCAAAAAAAAAAAAATTGTTTCTTCACTTAGCCATTGATGTATGGCCTAATTGCTTCTTAAAACTCTCTAGTTCTATATTGTTACTGGTTTTCTACATGTGGAGGTTAGATTTTATGAATCTGCACAAAACTGTGATCGTAAAAGTTTTTGTATCCTAACATAGTGAATTGTTAAATCTACAAATTGTAAATTACTTTAACGTAACCAACCGTCTTATCACGTGCAATCTTATTGCTTTGTTTATGCTGCTACACAAACAATAGAAAATTTAATGTCGAGGCGTTCATGTCTAATGGCATTACATATTGTATCTTTAAAGTTAGGAATAAAAGTTCATACCTTTACATGTGTCTTCCTATTTGGTGTTTCAGAAATTTCCAAATAAATTTTCCTTGGTCAGTAACTCGTGCTTTGATGCCAAACTTTCAGAATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCCGTAAGTGAAAATGCCTTTGCTGGTGCGATTCCATGGTTGCTAGGCTACACATTTCTTTGATCGTCTAAATGTCGAACAGGCATCCTAACTTTTAGTTTTCAGGTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAGGTACTTGCTTTCCTTATTCTTTAATCATTATTTCGGATGTATTTATAACTTACAACTCCCTCTATTCCAATTTGTTTGCCTTACTTTCCTTATTAGTCCGTTCACAAAAGGATGTCTCTTTCTCTTTTAACAATTCTTTAATTCCAACTTTCCATGTGGCTTGTTTAAGTCCACGAGATTAAAAGACATTTTTCTAAATTCTACATACCTTTAGTTTAAGACTGCAATATTGAAAAGGTTTCAATATAACTACATCTGGTTTAGTTTTCCTTCCTTTCTTAAACTCCGTTACCAAGACAAAATCAGACAAGCAAATCGAAACGGAGGGAGTATGTATTTGATTGACCGTAGAGATACATGCAACATCTCCAAAACTTCAATTTTCAAAAATCTATTGGCTGGTGTAATACTATTTATAAATGAAATTGGCTTAAAATCCCATTAAAAGTGCTTCAAAATAAAGTTCTTTTGATGAGGTTTTGAGTTTTCTGTATCCAATTTTAAAACCTGTTTCTTAGATGACCATTTCTTGATTATTATTTTTTTGTATGCTGTTTTAGATCAACTTAACCAATCAAGCTGACATGAAAAAGATCGTTCAAACAATTAACTATTCCAATTGTTGTTGCAAGTTTTCTTTTTGGCAGTTGTATATATGAACATTGTTTAGATGCTTAACTTGTATCTCTATATCCTCTTTATGTAGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAGGTGAGCTGATCTCTTTAGCATTCGTAATGAGATCGGTTGTTGTCATTAAACTATATCTACCATATGATTTGATGAATATTTTAAAATGTTCCCGGTGTGATACAAAGTTCTCAAACAGAAGTTCAGTAAGTGAAGAACCAAAGTTTGTTTATCTTATACTTTCCACTTGGGAGATGTCAGCACTCTGAAGAACGCACTTCAGTATTCTCTCATCTTTGAAAGCCGTGGCGGAATTTCCTTATTCTTCAGATACTTAAGATCTTATATCAAAGAGTTAATAGTCAAAAACACACCTAAAAAGTATCTCAGTTTTTCGAGTTTTACACCTGAACTATTAGGTAAGCGAGCTTCCTACTTGAACTATCACCAACTATTTATTAAAATACACCTCAACTATTAGATGTTTCCCTTTCCTACCTGAAATATCACCATCGCTCGGGTACACAAAGGGAATAATTGATAGTTGAGGTATGTTTGATAAACAGTTGGTGATAGTTCAAGTAGGAAACTCATCCACTTGATAGTTCAGGTATGAAACTCGAAAAACTTGGATATTTTAGAGTGTTTTTGACTCTTCACTTTATATGAAACAATCTAAATAGCCCCAATAAAGTTTCAGTTTGTCCATCCCTTCTTTTGTTTTCATCTTGGTTTCTCGTCGTGATTGGGGTTGGGCTTTTTGACGGAGCATATACCAGAAGGATGATATCAGATGTGATGCTGCAGCACTTCCCTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCGTCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAACTAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGCTATCTTCTACCTGATCTACTCAAAACTTTAGATTATATTCATCTCATTACCTTCATCACTTTTTGGTTAGTATTAGTTATGCTTGCTTTATAGACAGATCAGTTATAATCTTTTATTTCTTTCTTTTTCGGGATTATGGGTAAGGGTTTGTTAGGTGGGGTGGGATGGGGTGGGGGTGAGGTATGCCTCATCGCATTTTCTGTACACTATGACACTGTTATCCAATGCATATCATACAGGGGTGAACCTATTGTTTAAGCTACGAGTCCAGCTGAACCCTATAGCTTTGGCTTAGACCATGTATGTTTTAACCAGTGAATTAGATGGAATGTTGATAGAACTCCGAATACAAACCCATGATTCTAATTCTAGTTCCGTCTCTGATACCATATGTAGGATACTAACAAAAAAAGAGTAGTGTTATCATTGCTTCCTAGTCCTATTAAGGCTTTGCGTAAACCTCTATCTTAAGCTTATAAGAATCTCGGATATTATCAGTTGTGATGTTTATGAAGCACGTAGATATATCAAATTCTGCATTCCAGAAGTTGTTATGAACTTATAACGACAAATATCATGTCACTCTTGTGCATTATTCTGCCATTCCAAACCGAAAGTTTGTCTCACTATGCTTTTGATCGCGTTCTCTCTTGTTATATACCGCAGGCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAATTGTTTATATATGTCTCCATAAATGTT</genome_strand>
        <mrna_strand>CAATCTCTGCTGCTTCTACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCC......................................................................................................GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTAGTATTGTTTCCATTTGATGTTAATTACACCCTTCTGCAGACAACAGCATATTTGTTTGTCTGCAATTGTTTATATATGTCTCCCATAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337209" ref_strand="+" ref_description="SGN-E337209 [cTOE-7-I7]">
      <seq>tggaaatacagggagcagcgatcttttccgttaactgaagaagagtacctactgaggctagatgatgtggcaaacacattgaaatgctggggagctgtttcacatattcgtaatagccttgagaagttgaaagagcggcctcggatagggaaggcagtgagcattttcatcgatatggatgaatccggaggccgtgcaaaggaatggatttacaagtagaccagaacattgtagctcctcaatgttgatagttagcaatacataggtagatatatagtacaaaaaagttgaagaaacacttgtattctttattaattactatttcattgtgcagacacaattttttatattgtttccatttgatgtcaattacacccttctgcagacaacagcatatttgttgtcctgcaattgtttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="33739" stop="32039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33437" g_stop="33303" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="153" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32607" g_stop="32331" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="430" r_length="277" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E337209" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33437" e_stop="33303"/>
          <exon e_start="32607" e_stop="32331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGCTATCTTCTACCTGATCTACTCAAAACTTTAGATTATATTCATCTCATTACCTTCATCACTTTTTGGTTAGTATTAGTTATGCTTGCTTTATAGACAGATCAGTTATAATCTTTTATTTCTTTCTTTTTCGGGATTATGGGTAAGGGTTTGTTAGGTGGGGTGGGATGGGGTGGGGGTGAGGTATGCCTCATCGCATTTTCTGTACACTATGACACTGTTATCCAATGCATATCATACAGGGGTGAACCTATTGTTTAAGCTACGAGTCCAGCTGAACCCTATAGCTTTGGCTTAGACCATGTATGTTTTAACCAGTGAATTAGATGGAATGTTGATAGAACTCCGAATACAAACCCATGATTCTAATTCTAGTTCCGTCTCTGATACCATATGTAGGATACTAACAAAAAAAGAGTAGTGTTATCATTGCTTCCTAGTCCTATTAAGGCTTTGCGTAAACCTCTATCTTAAGCTTATAAGAATCTCGGATATTATCAGTTGTGATGTTTATGAAGCACGTAGATATATCAAATTCTGCATTCCAGAAGTTGTTATGAACTTATAACGACAAATATCATGTCACTCTTGTGCATTATTCTGCCATTCCAAACCGAAAGTTTGTCTCACTATGCTTTTGATCGCGTTCTCTCTTGTTATATACCGCAGGCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAATTGTTTATATATGTCTCCA</genome_strand>
        <mrna_strand>CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAATTGTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432072" ref_strand="+" ref_description="SGN-E432072 [STM-56-O14]">
      <seq>ttagcggcctcggatagggaaggcagtgagcattttcatcgatatggatgaatccggaggccgtgcaaatgaatggatttacaagtagaccagaacattgtagctcctcaatgttgatagttagcaatacataggtagatatagtacaaagttgaagaaacacttgtattctttattaattactactatttcattgtgcagacacaattttttatattgtctccatttgatggcaattacccccttctgcagacaacagcatatttattgtcctgcaattgtttatgtctccataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="33622" stop="32038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33324" g_stop="33303" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32607" g_stop="32342" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="286" r_length="264" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="293" polyA_stop="306"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E432072" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33324" e_stop="33303"/>
          <exon e_start="32607" e_stop="32342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCGGCCTCGGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGCTATCTTCTACCTGATCTACTCAAAACTTTAGATTATATTCATCTCATTACCTTCATCACTTTTTGGTTAGTATTAGTTATGCTTGCTTTATAGACAGATCAGTTATAATCTTTTATTTCTTTCTTTTTCGGGATTATGGGTAAGGGTTTGTTAGGTGGGGTGGGATGGGGTGGGGGTGAGGTATGCCTCATCGCATTTTCTGTACACTATGACACTGTTATCCAATGCATATCATACAGGGGTGAACCTATTGTTTAAGCTACGAGTCCAGCTGAACCCTATAGCTTTGGCTTAGACCATGTATGTTTTAACCAGTGAATTAGATGGAATGTTGATAGAACTCCGAATACAAACCCATGATTCTAATTCTAGTTCCGTCTCTGATACCATATGTAGGATACTAACAAAAAAAGAGTAGTGTTATCATTGCTTCCTAGTCCTATTAAGGCTTTGCGTAAACCTCTATCTTAAGCTTATAAGAATCTCGGATATTATCAGTTGTGATGTTTATGAAGCACGTAGATATATCAAATTCTGCATTCCAGAAGTTGTTATGAACTTATAACGACAAATATCATGTCACTCTTGTGCATTATTCTGCCATTCCAAACCGAAAGTTTGTCTCACTATGCTTTTGATCGCGTTCTCTCTTGTTATATACCGCAGGCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAA-T--TACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAATTGTTTAT</genome_strand>
        <mrna_strand>TTAGCGGCCTCGGATAGGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAATGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAG--ATATAGTAC---AAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTACTATTTCATTGTGCAGACACAATTTTTTATATTGTCTCCATTTGATGGCAATTACCCCCTTCTGCAGACAACAGCATATTTATTGTCCTGCAATTGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400704" ref_strand="+" ref_description="SGN-E400704 [PPC-1-L6]">
      <seq>gcggcctcggatagggaaggcagtgagcattttcatcgatatggatgaatccggaggccgtgcaaatgaatggatttacaagtagaccagaacattgtagctcctcaatgttgatagttagcaatacataggtagatatagtacaaagttgaagaaacacttgtattctttattaattactactatttcattgtgcagacacaattttttatattgtctccatttgatggcaattacccccttctgcagacaacagcatatttattggcctgcaattggttatggctccataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="33621" stop="32042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33321" g_stop="33303" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32607" g_stop="32342" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="283" r_length="264" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="290" polyA_stop="303"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E400704" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33321" e_stop="33303"/>
          <exon e_start="32607" e_stop="32342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCCTCGGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGCTATCTTCTACCTGATCTACTCAAAACTTTAGATTATATTCATCTCATTACCTTCATCACTTTTTGGTTAGTATTAGTTATGCTTGCTTTATAGACAGATCAGTTATAATCTTTTATTTCTTTCTTTTTCGGGATTATGGGTAAGGGTTTGTTAGGTGGGGTGGGATGGGGTGGGGGTGAGGTATGCCTCATCGCATTTTCTGTACACTATGACACTGTTATCCAATGCATATCATACAGGGGTGAACCTATTGTTTAAGCTACGAGTCCAGCTGAACCCTATAGCTTTGGCTTAGACCATGTATGTTTTAACCAGTGAATTAGATGGAATGTTGATAGAACTCCGAATACAAACCCATGATTCTAATTCTAGTTCCGTCTCTGATACCATATGTAGGATACTAACAAAAAAAGAGTAGTGTTATCATTGCTTCCTAGTCCTATTAAGGCTTTGCGTAAACCTCTATCTTAAGCTTATAAGAATCTCGGATATTATCAGTTGTGATGTTTATGAAGCACGTAGATATATCAAATTCTGCATTCCAGAAGTTGTTATGAACTTATAACGACAAATATCATGTCACTCTTGTGCATTATTCTGCCATTCCAAACCGAAAGTTTGTCTCACTATGCTTTTGATCGCGTTCTCTCTTGTTATATACCGCAGGCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAA-T--TACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAATTGTTTAT</genome_strand>
        <mrna_strand>GCGGCCTCGGATAGGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAATGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAG--ATATAGTAC---AAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTACTATTTCATTGTGCAGACACAATTTTTTATATTGTCTCCATTTGATGGCAATTACCCCCTTCTGCAGACAACAGCATATTTATTGGCCTGCAATTGGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737094" ref_strand="+" ref_description="SGN-E737094 [LC08BH05]">
      <seq>cccttactctgctgcttctaccagaatgacgagttctctggggacccaccctcgtatctgctcgttaggaggaggtccagagcatattgtgaaggaaagaagctgcaaaatttcatgctttcgttatacagatgtagaatcttcttggaaagaattgtttccttcaaaaattcagaagttcaatagctgccgccacctaaatactagaaaatgctgggcagttttttccgctgcaaccggtgatgcaaatgatccggatgactcagaagatagtaagaatcctccagaaaatgaaaatgaatccgtaaataatgaaattttaaggggtaatcttgaaagaatcgtcgggcgggatgactctgcatttagcggaatagaccttgcagctctgataaggaataaatatggaaggtcctatgatgttcaattgattaagaaggaattcatggggaaaaatcttcttgcgttaaacgttatgtggaaatacagggagcagcgatcttttccgttaactgaagaagagtacctactgaggctagatgatgtggcaaacacattgaaatgctggggagctgtttcacatattcgtaatagccttgagaagttgaaagagcggcctcggatagggaaggcagtgagcattttcatcgatatggatgaatccggaggccgtgcaaaggaatggatttacaagtagaccagaacattgtagctcctcaatgttgatagttagcaatacataggtagatatatagtacaaaaaagttgaagaaacacttgtattctttattaattactatttcattgtgcagacacaattttttatattgtttccatttgatgttaattacacccttctgcagaccacagcataattgttgtcctgcaattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="36317" stop="32046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36010" g_stop="35731" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="304" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35628" g_stop="35494" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="439" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34787" g_stop="34731" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="496" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33437" g_stop="33303" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="631" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32607" g_stop="32346" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="893" r_length="262" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E737094" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36010" e_stop="35731"/>
          <exon e_start="35628" e_stop="35494"/>
          <exon e_start="34787" e_stop="34731"/>
          <exon e_start="33437" e_stop="33303"/>
          <exon e_start="32607" e_stop="32346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCCGTAAGTGAAAATGCCTTTGCTGGTGCGATTCCATGGTTGCTAGGCTACACATTTCTTTGATCGTCTAAATGTCGAACAGGCATCCTAACTTTTAGTTTTCAGGTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAGGTACTTGCTTTCCTTATTCTTTAATCATTATTTCGGATGTATTTATAACTTACAACTCCCTCTATTCCAATTTGTTTGCCTTACTTTCCTTATTAGTCCGTTCACAAAAGGATGTCTCTTTCTCTTTTAACAATTCTTTAATTCCAACTTTCCATGTGGCTTGTTTAAGTCCACGAGATTAAAAGACATTTTTCTAAATTCTACATACCTTTAGTTTAAGACTGCAATATTGAAAAGGTTTCAATATAACTACATCTGGTTTAGTTTTCCTTCCTTTCTTAAACTCCGTTACCAAGACAAAATCAGACAAGCAAATCGAAACGGAGGGAGTATGTATTTGATTGACCGTAGAGATACATGCAACATCTCCAAAACTTCAATTTTCAAAAATCTATTGGCTGGTGTAATACTATTTATAAATGAAATTGGCTTAAAATCCCATTAAAAGTGCTTCAAAATAAAGTTCTTTTGATGAGGTTTTGAGTTTTCTGTATCCAATTTTAAAACCTGTTTCTTAGATGACCATTTCTTGATTATTATTTTTTTGTATGCTGTTTTAGATCAACTTAACCAATCAAGCTGACATGAAAAAGATCGTTCAAACAATTAACTATTCCAATTGTTGTTGCAAGTTTTCTTTTTGGCAGTTGTATATATGAACATTGTTTAGATGCTTAACTTGTATCTCTATATCCTCTTTATGTAGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAGGTGAGCTGATCTCTTTAGCATTCGTAATGAGATCGGTTGTTGTCATTAAACTATATCTACCATATGATTTGATGAATATTTTAAAATGTTCCCGGTGTGATACAAAGTTCTCAAACAGAAGTTCAGTAAGTGAAGAACCAAAGTTTGTTTATCTTATACTTTCCACTTGGGAGATGTCAGCACTCTGAAGAACGCACTTCAGTATTCTCTCATCTTTGAAAGCCGTGGCGGAATTTCCTTATTCTTCAGATACTTAAGATCTTATATCAAAGAGTTAATAGTCAAAAACACACCTAAAAAGTATCTCAGTTTTTCGAGTTTTACACCTGAACTATTAGGTAAGCGAGCTTCCTACTTGAACTATCACCAACTATTTATTAAAATACACCTCAACTATTAGATGTTTCCCTTTCCTACCTGAAATATCACCATCGCTCGGGTACACAAAGGGAATAATTGATAGTTGAGGTATGTTTGATAAACAGTTGGTGATAGTTCAAGTAGGAAACTCATCCACTTGATAGTTCAGGTATGAAACTCGAAAAACTTGGATATTTTAGAGTGTTTTTGACTCTTCACTTTATATGAAACAATCTAAATAGCCCCAATAAAGTTTCAGTTTGTCCATCCCTTCTTTTGTTTTCATCTTGGTTTCTCGTCGTGATTGGGGTTGGGCTTTTTGACGGAGCATATACCAGAAGGATGATATCAGATGTGATGCTGCAGCACTTCCCTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCGTCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAACTAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGCTATCTTCTACCTGATCTACTCAAAACTTTAGATTATATTCATCTCATTACCTTCATCACTTTTTGGTTAGTATTAGTTATGCTTGCTTTATAGACAGATCAGTTATAATCTTTTATTTCTTTCTTTTTCGGGATTATGGGTAAGGGTTTGTTAGGTGGGGTGGGATGGGGTGGGGGTGAGGTATGCCTCATCGCATTTTCTGTACACTATGACACTGTTATCCAATGCATATCATACAGGGGTGAACCTATTGTTTAAGCTACGAGTCCAGCTGAACCCTATAGCTTTGGCTTAGACCATGTATGTTTTAACCAGTGAATTAGATGGAATGTTGATAGAACTCCGAATACAAACCCATGATTCTAATTCTAGTTCCGTCTCTGATACCATATGTAGGATACTAACAAAAAAAGAGTAGTGTTATCATTGCTTCCTAGTCCTATTAAGGCTTTGCGTAAACCTCTATCTTAAGCTTATAAGAATCTCGGATATTATCAGTTGTGATGTTTATGAAGCACGTAGATATATCAAATTCTGCATTCCAGAAGTTGTTATGAACTTATAACGACAAATATCATGTCACTCTTGTGCATTATTCTGCCATTCCAAACCGAAAGTTTGTCTCACTATGCTTTTGATCGCGTTCTCTCTTGTTATATACCGCAGGCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAATTGT</genome_strand>
        <mrna_strand>AATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCC......................................................................................................GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTTAATTACACCCTTCTGCAGACCACAGCATAATTGTTGTCCTGCAATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714163" ref_strand="+" ref_description="SGN-E714163 [FB10CG08]">
      <seq>cagatcatattgtgaaggaaagaagctgcaaaatttcatgctttcgttatacagatgtagaatcttcttggaaagaattgtttccttcaaaaattcagaagttcaatagctgccgccacctaaatactagaaaatgctgggcagttttttccgctgcaaccggtgatgcaaatgatccggatgactcagaagatagtaagaatcctccagaaaatgaaaatgaatccgtaaataatgaaattttaaggggtaatcttgaaagaatcgtcgggcgggatgactctgcatttagcggaatagaccttgcagctctgataaggaataaatatggaaggtcctatgatgttcaattgattaagaaggaattcatggggaaaaatcttcttgcgttaaacgttatgtggaaatacagggagcagcgatcttttccgttaactgaagaagagtacctactgaggctagatgatgtggcaaacacattgaaatgctggggagctgtttcacatattcgtaatagccttgagaagttgaaagagcggcctcggatagggaaggcagtgagcattttcatcgatatggatgaatccggaggccgtgcaaaggaatggatttacaagtagaccagaacattgtagctcctcaatgttgatagttagcaatacataggtagatatatagtacaaaaaagttgaagaaacacttgtattctttattaattactatttcattgtgcagacacaattttttatattgtttccatttgatgttaattacacccttctgcagacaacagcatatttgttgtcctgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="36257" stop="32049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35957" g_stop="35731" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35628" g_stop="35494" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="362" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34787" g_stop="34731" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="419" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33437" g_stop="33303" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="554" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32607" g_stop="32349" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="813" r_length="259" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E714163" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35957" e_stop="35731"/>
          <exon e_start="35628" e_stop="35494"/>
          <exon e_start="34787" e_stop="34731"/>
          <exon e_start="33437" e_stop="33303"/>
          <exon e_start="32607" e_stop="32349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCCGTAAGTGAAAATGCCTTTGCTGGTGCGATTCCATGGTTGCTAGGCTACACATTTCTTTGATCGTCTAAATGTCGAACAGGCATCCTAACTTTTAGTTTTCAGGTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAGGTACTTGCTTTCCTTATTCTTTAATCATTATTTCGGATGTATTTATAACTTACAACTCCCTCTATTCCAATTTGTTTGCCTTACTTTCCTTATTAGTCCGTTCACAAAAGGATGTCTCTTTCTCTTTTAACAATTCTTTAATTCCAACTTTCCATGTGGCTTGTTTAAGTCCACGAGATTAAAAGACATTTTTCTAAATTCTACATACCTTTAGTTTAAGACTGCAATATTGAAAAGGTTTCAATATAACTACATCTGGTTTAGTTTTCCTTCCTTTCTTAAACTCCGTTACCAAGACAAAATCAGACAAGCAAATCGAAACGGAGGGAGTATGTATTTGATTGACCGTAGAGATACATGCAACATCTCCAAAACTTCAATTTTCAAAAATCTATTGGCTGGTGTAATACTATTTATAAATGAAATTGGCTTAAAATCCCATTAAAAGTGCTTCAAAATAAAGTTCTTTTGATGAGGTTTTGAGTTTTCTGTATCCAATTTTAAAACCTGTTTCTTAGATGACCATTTCTTGATTATTATTTTTTTGTATGCTGTTTTAGATCAACTTAACCAATCAAGCTGACATGAAAAAGATCGTTCAAACAATTAACTATTCCAATTGTTGTTGCAAGTTTTCTTTTTGGCAGTTGTATATATGAACATTGTTTAGATGCTTAACTTGTATCTCTATATCCTCTTTATGTAGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAGGTGAGCTGATCTCTTTAGCATTCGTAATGAGATCGGTTGTTGTCATTAAACTATATCTACCATATGATTTGATGAATATTTTAAAATGTTCCCGGTGTGATACAAAGTTCTCAAACAGAAGTTCAGTAAGTGAAGAACCAAAGTTTGTTTATCTTATACTTTCCACTTGGGAGATGTCAGCACTCTGAAGAACGCACTTCAGTATTCTCTCATCTTTGAAAGCCGTGGCGGAATTTCCTTATTCTTCAGATACTTAAGATCTTATATCAAAGAGTTAATAGTCAAAAACACACCTAAAAAGTATCTCAGTTTTTCGAGTTTTACACCTGAACTATTAGGTAAGCGAGCTTCCTACTTGAACTATCACCAACTATTTATTAAAATACACCTCAACTATTAGATGTTTCCCTTTCCTACCTGAAATATCACCATCGCTCGGGTACACAAAGGGAATAATTGATAGTTGAGGTATGTTTGATAAACAGTTGGTGATAGTTCAAGTAGGAAACTCATCCACTTGATAGTTCAGGTATGAAACTCGAAAAACTTGGATATTTTAGAGTGTTTTTGACTCTTCACTTTATATGAAACAATCTAAATAGCCCCAATAAAGTTTCAGTTTGTCCATCCCTTCTTTTGTTTTCATCTTGGTTTCTCGTCGTGATTGGGGTTGGGCTTTTTGACGGAGCATATACCAGAAGGATGATATCAGATGTGATGCTGCAGCACTTCCCTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCGTCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAACTAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGCTATCTTCTACCTGATCTACTCAAAACTTTAGATTATATTCATCTCATTACCTTCATCACTTTTTGGTTAGTATTAGTTATGCTTGCTTTATAGACAGATCAGTTATAATCTTTTATTTCTTTCTTTTTCGGGATTATGGGTAAGGGTTTGTTAGGTGGGGTGGGATGGGGTGGGGGTGAGGTATGCCTCATCGCATTTTCTGTACACTATGACACTGTTATCCAATGCATATCATACAGGGGTGAACCTATTGTTTAAGCTACGAGTCCAGCTGAACCCTATAGCTTTGGCTTAGACCATGTATGTTTTAACCAGTGAATTAGATGGAATGTTGATAGAACTCCGAATACAAACCCATGATTCTAATTCTAGTTCCGTCTCTGATACCATATGTAGGATACTAACAAAAAAAGAGTAGTGTTATCATTGCTTCCTAGTCCTATTAAGGCTTTGCGTAAACCTCTATCTTAAGCTTATAAGAATCTCGGATATTATCAGTTGTGATGTTTATGAAGCACGTAGATATATCAAATTCTGCATTCCAGAAGTTGTTATGAACTTATAACGACAAATATCATGTCACTCTTGTGCATTATTCTGCCATTCCAAACCGAAAGTTTGTCTCACTATGCTTTTGATCGCGTTCTCTCTTGTTATATACCGCAGGCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAAT</genome_strand>
        <mrna_strand>CAGATCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCC......................................................................................................GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTTAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706061" ref_strand="+" ref_description="SGN-E706061 [FA28DF03]">
      <seq>ccagaatgacgagttctctggggacccaccctcgtatctgctcgttaggaggaggtccagagcatattgtgaaggaaagaagctgcaaaatttcatgctttcgttatacagatgtagaatcttcttggaaagaattgtttccttcaaaaattcagaagttcaatagctgccgccacctaaatactagaaaatgctgggcagttttttccgctgcaaccggtgatgcaaatgatccggatgactcagaagatagtaagaatcctccagaaaatgaaaatgaatccgtaaataatgaaattttaaggggtaatcttgaaagaatcgtcgggcgggatgactctgcatttagcggaatagaccttgcagctctgataaggaataaatatggaaggtcctatgatgttcaattgattaagaaggaattcatggggaaaaatcttcttgcgttaaacgttatgtggaaatacagggagcagcgatcttttccgttaactgaagaagagtacctactgaggctagatgatgtggcaaacacattgaaatgctggggagctgtttcacatattcgtaatagccttgagaagttgaaagagcggcctcggatagggaaggcagtgagcattttcatcgatatggatgaatccggaggccgtgcaaaggaatggatttacaagtagaccagaacattgtagctcctcaatgttgatagttagcaatacataggtagatatatagtacaaaaaagttgaagaaacacttgtattctttattaattactatttcattgtgcagacacaattttttatattgtttccatttgatgttaattacacccttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="36313" stop="32078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36014" g_stop="35731" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35628" g_stop="35494" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="419" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34787" g_stop="34731" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="476" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33437" g_stop="33303" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="611" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32607" g_stop="32378" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="841" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E706061" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36014" e_stop="35731"/>
          <exon e_start="35628" e_stop="35494"/>
          <exon e_start="34787" e_stop="34731"/>
          <exon e_start="33437" e_stop="33303"/>
          <exon e_start="32607" e_stop="32378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCCGTAAGTGAAAATGCCTTTGCTGGTGCGATTCCATGGTTGCTAGGCTACACATTTCTTTGATCGTCTAAATGTCGAACAGGCATCCTAACTTTTAGTTTTCAGGTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAGGTACTTGCTTTCCTTATTCTTTAATCATTATTTCGGATGTATTTATAACTTACAACTCCCTCTATTCCAATTTGTTTGCCTTACTTTCCTTATTAGTCCGTTCACAAAAGGATGTCTCTTTCTCTTTTAACAATTCTTTAATTCCAACTTTCCATGTGGCTTGTTTAAGTCCACGAGATTAAAAGACATTTTTCTAAATTCTACATACCTTTAGTTTAAGACTGCAATATTGAAAAGGTTTCAATATAACTACATCTGGTTTAGTTTTCCTTCCTTTCTTAAACTCCGTTACCAAGACAAAATCAGACAAGCAAATCGAAACGGAGGGAGTATGTATTTGATTGACCGTAGAGATACATGCAACATCTCCAAAACTTCAATTTTCAAAAATCTATTGGCTGGTGTAATACTATTTATAAATGAAATTGGCTTAAAATCCCATTAAAAGTGCTTCAAAATAAAGTTCTTTTGATGAGGTTTTGAGTTTTCTGTATCCAATTTTAAAACCTGTTTCTTAGATGACCATTTCTTGATTATTATTTTTTTGTATGCTGTTTTAGATCAACTTAACCAATCAAGCTGACATGAAAAAGATCGTTCAAACAATTAACTATTCCAATTGTTGTTGCAAGTTTTCTTTTTGGCAGTTGTATATATGAACATTGTTTAGATGCTTAACTTGTATCTCTATATCCTCTTTATGTAGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAGGTGAGCTGATCTCTTTAGCATTCGTAATGAGATCGGTTGTTGTCATTAAACTATATCTACCATATGATTTGATGAATATTTTAAAATGTTCCCGGTGTGATACAAAGTTCTCAAACAGAAGTTCAGTAAGTGAAGAACCAAAGTTTGTTTATCTTATACTTTCCACTTGGGAGATGTCAGCACTCTGAAGAACGCACTTCAGTATTCTCTCATCTTTGAAAGCCGTGGCGGAATTTCCTTATTCTTCAGATACTTAAGATCTTATATCAAAGAGTTAATAGTCAAAAACACACCTAAAAAGTATCTCAGTTTTTCGAGTTTTACACCTGAACTATTAGGTAAGCGAGCTTCCTACTTGAACTATCACCAACTATTTATTAAAATACACCTCAACTATTAGATGTTTCCCTTTCCTACCTGAAATATCACCATCGCTCGGGTACACAAAGGGAATAATTGATAGTTGAGGTATGTTTGATAAACAGTTGGTGATAGTTCAAGTAGGAAACTCATCCACTTGATAGTTCAGGTATGAAACTCGAAAAACTTGGATATTTTAGAGTGTTTTTGACTCTTCACTTTATATGAAACAATCTAAATAGCCCCAATAAAGTTTCAGTTTGTCCATCCCTTCTTTTGTTTTCATCTTGGTTTCTCGTCGTGATTGGGGTTGGGCTTTTTGACGGAGCATATACCAGAAGGATGATATCAGATGTGATGCTGCAGCACTTCCCTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCGTCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAACTAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGCTATCTTCTACCTGATCTACTCAAAACTTTAGATTATATTCATCTCATTACCTTCATCACTTTTTGGTTAGTATTAGTTATGCTTGCTTTATAGACAGATCAGTTATAATCTTTTATTTCTTTCTTTTTCGGGATTATGGGTAAGGGTTTGTTAGGTGGGGTGGGATGGGGTGGGGGTGAGGTATGCCTCATCGCATTTTCTGTACACTATGACACTGTTATCCAATGCATATCATACAGGGGTGAACCTATTGTTTAAGCTACGAGTCCAGCTGAACCCTATAGCTTTGGCTTAGACCATGTATGTTTTAACCAGTGAATTAGATGGAATGTTGATAGAACTCCGAATACAAACCCATGATTCTAATTCTAGTTCCGTCTCTGATACCATATGTAGGATACTAACAAAAAAAGAGTAGTGTTATCATTGCTTCCTAGTCCTATTAAGGCTTTGCGTAAACCTCTATCTTAAGCTTATAAGAATCTCGGATATTATCAGTTGTGATGTTTATGAAGCACGTAGATATATCAAATTCTGCATTCCAGAAGTTGTTATGAACTTATAACGACAAATATCATGTCACTCTTGTGCATTATTCTGCCATTCCAAACCGAAAGTTTGTCTCACTATGCTTTTGATCGCGTTCTCTCTTGTTATATACCGCAGGCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTGC</genome_strand>
        <mrna_strand>CCAGAATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCC......................................................................................................GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTTAATTACACCCTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618212" ref_strand="+" ref_description="SGN-E618212 [68888]">
      <seq>cttctaccagaatgacgagttctctggggacccaccctcgtatctgctcactaggaggaggtcctgagcatattgtgaaggaaagaagttgcaaaatttcatgttttcgttatacagatgtagaatcttcttggaaagaattgtttccttcaaaaattcagaagtttaatagctgccgccacctaaatactcgaaaatgttggccaattttttctgctgcaaccggtgatgcaaatgatccggatgactcagaagatagtaagaatcctcccgaaaatgaaaatgaatctgtaaatagtgaaattttaaggggtaatcttgaaagaatcgttgggtgggatgactctgcatttagtggaatagaccttgcagctctgataaggaataaatatggaaggtcctatgatgttcaattgattaagaaggaattcatggggaaaaatcttctcgcgttaaatgttatgtggaaatacagggagcagcgatcttttccgttaactgaagaagagtacctactgaggctagatgatgtggcaaacacattgaaatgttggggagctgtttcgcatattcgtaatagccttgagaagttgaaagagcggcctcggatagggaaggcagtgagcattttcatcgatatggatgaatccggaggccgtgcaaatgaatggatttacaagtagaccagaacattgtagctcctcaatgttgatagttagcaatacataggtagatatagtaccaaagttgaagaaacacttgtattctttattaattactactatttcatttgtgcggacacaattttttatattgtctccatttgatggcaattacccccttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="36317" stop="32079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36020" g_stop="35731" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.804" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35628" g_stop="35494" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="425" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34787" g_stop="34731" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="482" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293">
            <donor d_prob="0.902" d_score="0.96"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33437" g_stop="33303" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="617" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32607" g_stop="32379" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="846" r_length="229" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E618212" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36020" e_stop="35731"/>
          <exon e_start="35628" e_stop="35494"/>
          <exon e_start="34787" e_stop="34731"/>
          <exon e_start="33437" e_stop="33303"/>
          <exon e_start="32607" e_stop="32379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTCAGAATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCCGTAAGTGAAAATGCCTTTGCTGGTGCGATTCCATGGTTGCTAGGCTACACATTTCTTTGATCGTCTAAATGTCGAACAGGCATCCTAACTTTTAGTTTTCAGGTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAGGTACTTGCTTTCCTTATTCTTTAATCATTATTTCGGATGTATTTATAACTTACAACTCCCTCTATTCCAATTTGTTTGCCTTACTTTCCTTATTAGTCCGTTCACAAAAGGATGTCTCTTTCTCTTTTAACAATTCTTTAATTCCAACTTTCCATGTGGCTTGTTTAAGTCCACGAGATTAAAAGACATTTTTCTAAATTCTACATACCTTTAGTTTAAGACTGCAATATTGAAAAGGTTTCAATATAACTACATCTGGTTTAGTTTTCCTTCCTTTCTTAAACTCCGTTACCAAGACAAAATCAGACAAGCAAATCGAAACGGAGGGAGTATGTATTTGATTGACCGTAGAGATACATGCAACATCTCCAAAACTTCAATTTTCAAAAATCTATTGGCTGGTGTAATACTATTTATAAATGAAATTGGCTTAAAATCCCATTAAAAGTGCTTCAAAATAAAGTTCTTTTGATGAGGTTTTGAGTTTTCTGTATCCAATTTTAAAACCTGTTTCTTAGATGACCATTTCTTGATTATTATTTTTTTGTATGCTGTTTTAGATCAACTTAACCAATCAAGCTGACATGAAAAAGATCGTTCAAACAATTAACTATTCCAATTGTTGTTGCAAGTTTTCTTTTTGGCAGTTGTATATATGAACATTGTTTAGATGCTTAACTTGTATCTCTATATCCTCTTTATGTAGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAGGTGAGCTGATCTCTTTAGCATTCGTAATGAGATCGGTTGTTGTCATTAAACTATATCTACCATATGATTTGATGAATATTTTAAAATGTTCCCGGTGTGATACAAAGTTCTCAAACAGAAGTTCAGTAAGTGAAGAACCAAAGTTTGTTTATCTTATACTTTCCACTTGGGAGATGTCAGCACTCTGAAGAACGCACTTCAGTATTCTCTCATCTTTGAAAGCCGTGGCGGAATTTCCTTATTCTTCAGATACTTAAGATCTTATATCAAAGAGTTAATAGTCAAAAACACACCTAAAAAGTATCTCAGTTTTTCGAGTTTTACACCTGAACTATTAGGTAAGCGAGCTTCCTACTTGAACTATCACCAACTATTTATTAAAATACACCTCAACTATTAGATGTTTCCCTTTCCTACCTGAAATATCACCATCGCTCGGGTACACAAAGGGAATAATTGATAGTTGAGGTATGTTTGATAAACAGTTGGTGATAGTTCAAGTAGGAAACTCATCCACTTGATAGTTCAGGTATGAAACTCGAAAAACTTGGATATTTTAGAGTGTTTTTGACTCTTCACTTTATATGAAACAATCTAAATAGCCCCAATAAAGTTTCAGTTTGTCCATCCCTTCTTTTGTTTTCATCTTGGTTTCTCGTCGTGATTGGGGTTGGGCTTTTTGACGGAGCATATACCAGAAGGATGATATCAGATGTGATGCTGCAGCACTTCCCTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCGTCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAACTAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGCTATCTTCTACCTGATCTACTCAAAACTTTAGATTATATTCATCTCATTACCTTCATCACTTTTTGGTTAGTATTAGTTATGCTTGCTTTATAGACAGATCAGTTATAATCTTTTATTTCTTTCTTTTTCGGGATTATGGGTAAGGGTTTGTTAGGTGGGGTGGGATGGGGTGGGGGTGAGGTATGCCTCATCGCATTTTCTGTACACTATGACACTGTTATCCAATGCATATCATACAGGGGTGAACCTATTGTTTAAGCTACGAGTCCAGCTGAACCCTATAGCTTTGGCTTAGACCATGTATGTTTTAACCAGTGAATTAGATGGAATGTTGATAGAACTCCGAATACAAACCCATGATTCTAATTCTAGTTCCGTCTCTGATACCATATGTAGGATACTAACAAAAAAAGAGTAGTGTTATCATTGCTTCCTAGTCCTATTAAGGCTTTGCGTAAACCTCTATCTTAAGCTTATAAGAATCTCGGATATTATCAGTTGTGATGTTTATGAAGCACGTAGATATATCAAATTCTGCATTCCAGAAGTTGTTATGAACTTATAACGACAAATATCATGTCACTCTTGTGCATTATTCTGCCATTCCAAACCGAAAGTTTGTCTCACTATGCTTTTGATCGCGTTCTCTCTTGTTATATACCGCAGGCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAA-T--TACTATTTCA-TTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTG</genome_strand>
        <mrna_strand>CTTCTACCAGAATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCACTAGGAGGAGGTCCTGAGCATATTGTGAAGGAAAGAAGTTGCAAAATTTCATGTTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTTAATAGCTGCCGCCACCTAAATACTCGAAAATGTTGGCCAATTTTTTCTGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCCGAAAATGAAAATGAATCT......................................................................................................GTAAATAGTGAAATTTTAAGGGGTAATCTTGAAAGAATCGTTGGGTGGGATGACTCTGCATTTAGTGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGGGAAAAATCTTCTCGCGTTAAATGTTATGTGGAAATACAGGGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGTTGGGGAGCTGTTTCGCATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAATGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAG--ATATAGTAC--CAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTACTATTTCATTTGTGCGGACACAATTTTTTATATTGTCTCCATTTGATGGCAATTACCCCCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690490" ref_strand="+" ref_description="SGN-E690490 [LH_Ea03K08]">
      <seq>cgtttaagactctgctgcttctaccagaatgacgagttctcttgggacccaccctcgtatctgctcgttaggaggaggtccggagcatattgtgaaggaaagaagttgcaaaattccatgctttcgttatacagatgtagaatcttcttggaaagaattgtttccttcaaaaattcagaagttcaatagctgccgccacctaaatactagaaaatgctgggcagttttttccgctgcaaccggtgatacaaatgatccggatgattcagaagatagtaagaatcctccagaaaatgaaaatgaatctgtaaataatgaaattttaaggggtaatcttgaaagaatcgtcgggcgggatgactctgcatttagcggaatagaccttgcagctctgataaggaataaatatggaaggtcctatgatgttcaattgattaagaaggaattcatggggaaaaatcttctcgcgttaaatgttatgtggaaatacagggagcagcggtcttttccgttaactgaagaagaatacctactgaggctagatgatgtggcaaacacattgaaatgttggggagctgtttctcatattcgtaatagccttgagaagttgaaagagcggcctcggatagggaaggcagtgagcattttcatcgatatggatgaatccggaggccgtgcaaaggaatggatttacaagtagaccagaacattgtagctcctcaatgttgatagttagcaatacataggtagatatatagtacaaaaaagttgaagaaacacttgtattctttattaattactatttcattgtgcagacacaattttttatattgtttccattttgatgtcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="38266" stop="32087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37973" g_stop="37946" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.786"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37945" i_stop="36011" i_length="1935">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.226" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36010" g_stop="35731" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="307" r_length="280" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35628" g_stop="35494" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="442" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34787" g_stop="34731" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="499" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293">
            <donor d_prob="0.902" d_score="0.96"/>
            <acceptor a_prob="0.678" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33437" g_stop="33303" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="634" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32607" g_stop="32385" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="858" r_length="224" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E690490" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37973" e_stop="37946"/>
          <exon e_start="36010" e_stop="35731"/>
          <exon e_start="35628" e_stop="35494"/>
          <exon e_start="34787" e_stop="34731"/>
          <exon e_start="33437" e_stop="33303"/>
          <exon e_start="32607" e_stop="32385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACAAACTCTGCTGCTTCTACCAGGTATTTTTCTCTCCCACTTATTTATTATTATTTTTTTGTCAATTTTATCTAATTATCTGTTTTGAATCTTGATTTCTAAAGTTCCCTTTTTTATTTTGTTAGATTTTTTTGATGATTTATAGAAGGGGTTGTTGGAATTTTGGTTTGTTAAGTTTTTTTTGTAATGATGTGTGAAATATAGTTGTATGACAAGGGTTTTTTTTTTCTCATTGTGTATCAAAAGTAAGGTATGTGCTTAGTTAAAAGATACTTGATTTGAGGGGGTTTAGGATGTGAAGTTTATGGATTCGGGATTTTAGCACTTTTTTGAGTTGTTAGGTTGTAAATTTATAGTTTGTAAATATTGAAATGGAGTAGGTGGAGCTAGAAATTTAAAAGTTTTCTTTTTTATAGCTGTGGTGTACTTGCCAACTTGAGTGCTACCTCCCATCGACAACAGGTACATGTAGCTTCGTGTATTGTCTTTACTAGGATTTGAACCTGAAACCTCGCGAGTAGTAGGCCACACACCCTTGGGTACAGCTAGAAAATGAAGTTAATGGAGTTTGAATTTGACACCGAGTATATAACTTGTTTTATGAGTACATGGCTTGATTTACGAAATATTGGAAGTGCTCCTTGGAGAAGGTCCACGTTGATGCATTATGAAGTAGCTCTAGCTTCTTCTTCTTCTTCTTTTTTTCCTTTTTCAAATATAGCTATAATGAATTATGACAAGTTGATGTTGAATCAAATGATGTGCACTACCCTAGCTAAGAATAACTTGTAGCAGCTATAACATCCTACTTTATGAAAGAGCAAGAAAAGTTTGGACTATGGAGGAACAACGGTTTCCATGGTCAGTTTATGCTTATCCAGAAGGTGCAGGGGTTGGTTTCTGGTAGAACGAGCTTATCTTATACATGTTTTGTTGAAGAAGCTATGGTTTCGATCTGATTTGCCTGCACCTTATGTTTGAGCATGCGCTACCATGAACTAAGTACAGGTGTTGGACATCAGGTGTGTGTTATGGCCTTATGGCGTTAAAATTGTCAAAGCTTATGCATATAAAATATGTATATACACACAAAGTGTTGGATGGAGGCGCAAGGATACAATAATAAGCATGAAAATTGATGTGTGTTAGGCTATGTTGCTCCGACTCTCCAAAATATTACCATACTTGTGCTGGATTTTCCAAAAAATGCACTACTTTTGAAGAGTCGGCACACAATCGTCGACATTTTCAAAGAGTCCGAGCGACATTGCTGCTTAGCATCTTCTTGATACATAGGGTGAATGGCTTTTAGACTCATGTATAGTTAGTGTAACCTAAAAATAATTCTTTTGATGAGTCTATACTGAGTAGTCCAGAGTTTATTCTTGTTGAAATATCTATAACTTCAGTGCTTAAGCGCGCCTTTGAAAATCTTGTTATCAACCCTTGTTTACCCCTCTTTCTTTAGTTAATTCATTTCAATATACTAGCTATCTAATATCTTCTTATTATGCCTACGATTGATTAAGCAAAAAAAAAAAAATTGTTTCTTCACTTAGCCATTGATGTATGGCCTAATTGCTTCTTAAAACTCTCTAGTTCTATATTGTTACTGGTTTTCTACATGTGGAGGTTAGATTTTATGAATCTGCACAAAACTGTGATCGTAAAAGTTTTTGTATCCTAACATAGTGAATTGTTAAATCTACAAATTGTAAATTACTTTAACGTAACCAACCGTCTTATCACGTGCAATCTTATTGCTTTGTTTATGCTGCTACACAAACAATAGAAAATTTAATGTCGAGGCGTTCATGTCTAATGGCATTACATATTGTATCTTTAAAGTTAGGAATAAAAGTTCATACCTTTACATGTGTCTTCCTATTTGGTGTTTCAGAAATTTCCAAATAAATTTTCCTTGGTCAGTAACTCGTGCTTTGATGCCAAACTTTCAGAATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCCGTAAGTGAAAATGCCTTTGCTGGTGCGATTCCATGGTTGCTAGGCTACACATTTCTTTGATCGTCTAAATGTCGAACAGGCATCCTAACTTTTAGTTTTCAGGTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAGGTACTTGCTTTCCTTATTCTTTAATCATTATTTCGGATGTATTTATAACTTACAACTCCCTCTATTCCAATTTGTTTGCCTTACTTTCCTTATTAGTCCGTTCACAAAAGGATGTCTCTTTCTCTTTTAACAATTCTTTAATTCCAACTTTCCATGTGGCTTGTTTAAGTCCACGAGATTAAAAGACATTTTTCTAAATTCTACATACCTTTAGTTTAAGACTGCAATATTGAAAAGGTTTCAATATAACTACATCTGGTTTAGTTTTCCTTCCTTTCTTAAACTCCGTTACCAAGACAAAATCAGACAAGCAAATCGAAACGGAGGGAGTATGTATTTGATTGACCGTAGAGATACATGCAACATCTCCAAAACTTCAATTTTCAAAAATCTATTGGCTGGTGTAATACTATTTATAAATGAAATTGGCTTAAAATCCCATTAAAAGTGCTTCAAAATAAAGTTCTTTTGATGAGGTTTTGAGTTTTCTGTATCCAATTTTAAAACCTGTTTCTTAGATGACCATTTCTTGATTATTATTTTTTTGTATGCTGTTTTAGATCAACTTAACCAATCAAGCTGACATGAAAAAGATCGTTCAAACAATTAACTATTCCAATTGTTGTTGCAAGTTTTCTTTTTGGCAGTTGTATATATGAACATTGTTTAGATGCTTAACTTGTATCTCTATATCCTCTTTATGTAGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAGGTGAGCTGATCTCTTTAGCATTCGTAATGAGATCGGTTGTTGTCATTAAACTATATCTACCATATGATTTGATGAATATTTTAAAATGTTCCCGGTGTGATACAAAGTTCTCAAACAGAAGTTCAGTAAGTGAAGAACCAAAGTTTGTTTATCTTATACTTTCCACTTGGGAGATGTCAGCACTCTGAAGAACGCACTTCAGTATTCTCTCATCTTTGAAAGCCGTGGCGGAATTTCCTTATTCTTCAGATACTTAAGATCTTATATCAAAGAGTTAATAGTCAAAAACACACCTAAAAAGTATCTCAGTTTTTCGAGTTTTACACCTGAACTATTAGGTAAGCGAGCTTCCTACTTGAACTATCACCAACTATTTATTAAAATACACCTCAACTATTAGATGTTTCCCTTTCCTACCTGAAATATCACCATCGCTCGGGTACACAAAGGGAATAATTGATAGTTGAGGTATGTTTGATAAACAGTTGGTGATAGTTCAAGTAGGAAACTCATCCACTTGATAGTTCAGGTATGAAACTCGAAAAACTTGGATATTTTAGAGTGTTTTTGACTCTTCACTTTATATGAAACAATCTAAATAGCCCCAATAAAGTTTCAGTTTGTCCATCCCTTCTTTTGTTTTCATCTTGGTTTCTCGTCGTGATTGGGGTTGGGCTTTTTGACGGAGCATATACCAGAAGGATGATATCAGATGTGATGCTGCAGCACTTCCCTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCGTCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAACTAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGCTATCTTCTACCTGATCTACTCAAAACTTTAGATTATATTCATCTCATTACCTTCATCACTTTTTGGTTAGTATTAGTTATGCTTGCTTTATAGACAGATCAGTTATAATCTTTTATTTCTTTCTTTTTCGGGATTATGGGTAAGGGTTTGTTAGGTGGGGTGGGATGGGGTGGGGGTGAGGTATGCCTCATCGCATTTTCTGTACACTATGACACTGTTATCCAATGCATATCATACAGGGGTGAACCTATTGTTTAAGCTACGAGTCCAGCTGAACCCTATAGCTTTGGCTTAGACCATGTATGTTTTAACCAGTGAATTAGATGGAATGTTGATAGAACTCCGAATACAAACCCATGATTCTAATTCTAGTTCCGTCTCTGATACCATATGTAGGATACTAACAAAAAAAGAGTAGTGTTATCATTGCTTCCTAGTCCTATTAAGGCTTTGCGTAAACCTCTATCTTAAGCTTATAAGAATCTCGGATATTATCAGTTGTGATGTTTATGAAGCACGTAGATATATCAAATTCTGCATTCCAGAAGTTGTTATGAACTTATAACGACAAATATCATGTCACTCTTGTGCATTATTCTGCCATTCCAAACCGAAAGTTTGTCTCACTATGCTTTTGATCGCGTTCTCTCTTGTTATATACCGCAGGCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCA-TTTGATGTCAATTACACC</genome_strand>
        <mrna_strand>CGTTTA-AGACTCTGCTGCTTCTACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACGAGTTCTCTTGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCGGAGCATATTGTGAAGGAAAGAAGTTGCAAAATTCCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATACAAATGATCCGGATGATTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCT......................................................................................................GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGGGAAAAATCTTCTCGCGTTAAATGTTATGTGGAAATACAGGGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCTTTTCCGTTAACTGAAGAAGAATACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGTTGGGGAGCTGTTTCTCATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTTGATGTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618229" ref_strand="+" ref_description="SGN-E618229 [68905]">
      <seq>cttctaccagaatgacgagttctctggggaccaccctcgtatctgctcactaggaggaggtctgagcatattgtgaggaagagtgcaaattcatgtttcgttatacagatgtagaatcttcttggaaagaattgtttccttcaaaaattcagaagtttaatagctgccgccacctaaatactcgaaaatgttggccaattttttctgctgcaaccggtgatgcaaatgatccggatgactcagaagatagtaagaatcctcccgaaaatgaaaatgaatctgtaaatagtgaaattttaaggggtaatcttgaaagaatcgttgggtgggatgactctgcatttagtggaatagaccttgcagctctgataaggaataaatatggaaggtcctatgatgttcaattgattaagaaggaattcatggggaaaaatcttctcgcgttaaatgttatgtggaaatacagggagcagcgatcttttccgttaactgaagaagagtacctactgaggctagatgatgtggcaaacacattgaaatgttggggagctgtttcgcatattcgtaatagccttgagaagttgaaagagcggcctcggatagggaaggcagtgagcattttcatcgatatggatgaatccggaggccgtgcaaatgaatggatttacaagtagaccagaacattgtagctcctcaattgttgatagttagcaatacataggtagatatacgtacaaagttgaagaaacactttgtattctttattaattactactatttcattgtgcggaccacaattttttaatattgtttccatttgattggcaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="36317" stop="32089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36020" g_stop="35731" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.804" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35628" g_stop="35494" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="416" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34787" g_stop="34731" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="473" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293">
            <donor d_prob="0.902" d_score="0.96"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33437" g_stop="33303" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="608" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32607" g_stop="32389" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="832" r_length="224" r_score="0.881"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E618229" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36020" e_stop="35731"/>
          <exon e_start="35628" e_stop="35494"/>
          <exon e_start="34787" e_stop="34731"/>
          <exon e_start="33437" e_stop="33303"/>
          <exon e_start="32607" e_stop="32389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTCAGAATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCCGTAAGTGAAAATGCCTTTGCTGGTGCGATTCCATGGTTGCTAGGCTACACATTTCTTTGATCGTCTAAATGTCGAACAGGCATCCTAACTTTTAGTTTTCAGGTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAGGTACTTGCTTTCCTTATTCTTTAATCATTATTTCGGATGTATTTATAACTTACAACTCCCTCTATTCCAATTTGTTTGCCTTACTTTCCTTATTAGTCCGTTCACAAAAGGATGTCTCTTTCTCTTTTAACAATTCTTTAATTCCAACTTTCCATGTGGCTTGTTTAAGTCCACGAGATTAAAAGACATTTTTCTAAATTCTACATACCTTTAGTTTAAGACTGCAATATTGAAAAGGTTTCAATATAACTACATCTGGTTTAGTTTTCCTTCCTTTCTTAAACTCCGTTACCAAGACAAAATCAGACAAGCAAATCGAAACGGAGGGAGTATGTATTTGATTGACCGTAGAGATACATGCAACATCTCCAAAACTTCAATTTTCAAAAATCTATTGGCTGGTGTAATACTATTTATAAATGAAATTGGCTTAAAATCCCATTAAAAGTGCTTCAAAATAAAGTTCTTTTGATGAGGTTTTGAGTTTTCTGTATCCAATTTTAAAACCTGTTTCTTAGATGACCATTTCTTGATTATTATTTTTTTGTATGCTGTTTTAGATCAACTTAACCAATCAAGCTGACATGAAAAAGATCGTTCAAACAATTAACTATTCCAATTGTTGTTGCAAGTTTTCTTTTTGGCAGTTGTATATATGAACATTGTTTAGATGCTTAACTTGTATCTCTATATCCTCTTTATGTAGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAGGTGAGCTGATCTCTTTAGCATTCGTAATGAGATCGGTTGTTGTCATTAAACTATATCTACCATATGATTTGATGAATATTTTAAAATGTTCCCGGTGTGATACAAAGTTCTCAAACAGAAGTTCAGTAAGTGAAGAACCAAAGTTTGTTTATCTTATACTTTCCACTTGGGAGATGTCAGCACTCTGAAGAACGCACTTCAGTATTCTCTCATCTTTGAAAGCCGTGGCGGAATTTCCTTATTCTTCAGATACTTAAGATCTTATATCAAAGAGTTAATAGTCAAAAACACACCTAAAAAGTATCTCAGTTTTTCGAGTTTTACACCTGAACTATTAGGTAAGCGAGCTTCCTACTTGAACTATCACCAACTATTTATTAAAATACACCTCAACTATTAGATGTTTCCCTTTCCTACCTGAAATATCACCATCGCTCGGGTACACAAAGGGAATAATTGATAGTTGAGGTATGTTTGATAAACAGTTGGTGATAGTTCAAGTAGGAAACTCATCCACTTGATAGTTCAGGTATGAAACTCGAAAAACTTGGATATTTTAGAGTGTTTTTGACTCTTCACTTTATATGAAACAATCTAAATAGCCCCAATAAAGTTTCAGTTTGTCCATCCCTTCTTTTGTTTTCATCTTGGTTTCTCGTCGTGATTGGGGTTGGGCTTTTTGACGGAGCATATACCAGAAGGATGATATCAGATGTGATGCTGCAGCACTTCCCTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCGTCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAACTAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGCTATCTTCTACCTGATCTACTCAAAACTTTAGATTATATTCATCTCATTACCTTCATCACTTTTTGGTTAGTATTAGTTATGCTTGCTTTATAGACAGATCAGTTATAATCTTTTATTTCTTTCTTTTTCGGGATTATGGGTAAGGGTTTGTTAGGTGGGGTGGGATGGGGTGGGGGTGAGGTATGCCTCATCGCATTTTCTGTACACTATGACACTGTTATCCAATGCATATCATACAGGGGTGAACCTATTGTTTAAGCTACGAGTCCAGCTGAACCCTATAGCTTTGGCTTAGACCATGTATGTTTTAACCAGTGAATTAGATGGAATGTTGATAGAACTCCGAATACAAACCCATGATTCTAATTCTAGTTCCGTCTCTGATACCATATGTAGGATACTAACAAAAAAAGAGTAGTGTTATCATTGCTTCCTAGTCCTATTAAGGCTTTGCGTAAACCTCTATCTTAAGCTTATAAGAATCTCGGATATTATCAGTTGTGATGTTTATGAAGCACGTAGATATATCAAATTCTGCATTCCAGAAGTTGTTATGAACTTATAACGACAAATATCATGTCACTCTTGTGCATTATTCTGCCATTCCAAACCGAAAGTTTGTCTCACTATGCTTTTGATCGCGTTCTCTCTTGTTATATACCGCAGGCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAA-TGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACT-TGTATTCTTTATTAA-T--TACTATTTCATTGTGCAGA-CACAATTTTTT-ATATTGTTTCCATTTGA-TGTC-AATTA</genome_strand>
        <mrna_strand>CTTCTACCAGAATGACGAGTTCTCTGGGGACC-ACCCTCGTATCTGCTCACTAGGAGGAGGT-CTGAGCATATTGTG-AGG-AAG-AG-TGC-AAA-TTCATG-TTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTTAATAGCTGCCGCCACCTAAATACTCGAAAATGTTGGCCAATTTTTTCTGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCCGAAAATGAAAATGAATCT......................................................................................................GTAAATAGTGAAATTTTAAGGGGTAATCTTGAAAGAATCGTTGGGTGGGATGACTCTGCATTTAGTGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGGGAAAAATCTTCTCGCGTTAAATGTTATGTGGAAATACAGGGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGTTGGGGAGCTGTTTCGCATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAATGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATTGTTGATAGTTAGCAATACATAGGTAGATATA-CGTAC---AAAGTTGAAGAAACACTTTGTATTCTTTATTAATTACTACTATTTCATTGTGCGGACCACAATTTTTTAATATTGTTTCCATTTGATTGGCAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694330" ref_strand="+" ref_description="SGN-E694330 [LH_Ea03K08](-)">
      <seq>ggggacccaccctcgtatctgctcgttaggaggaggtccggagcatattgtgaaggaaagaagttgcaaaattccatgctttcgttatacagatgtagaatcttcttggaaagaattgtttccttcaaaaattcagaagttcaatagctgccgccacctaaatactagaaaatgctgggcagttttttccgctgcaaccggtgatacaaatgatccggatgattcagaagatagtaagaatcctccagaaaatgaaaatgaatctgtaaataatgaaattttaaggggtaatcttgaaagaatcgtcgggcgggatgactctgcatttagcggaatagaccttgcagctctgataaggaataaatatggaaggtcctatgatgttcaattgattaagaaggaattcatggggaaaaatcttctcgcgttaaatgttatgtggaaatacagggagcagcggtcttttccgttaactgaagaagaatacctactgaggctagatgatgtggcaaacacattgaaatgttggggagctgtttctcatattcgtaatagccttgagaagttgaaagagcggcctcggatagggaaggcagtgagcattttcatcgatatggatgaatccggaggccgtgcaaaggaatggatttacaagtagaccagaacattgtagctcctcaatgttgatagttagcaatacataggtagatatatagtacaaaaaagttgaagaaacacttgtattctttattaattactatttcattgtacaggcacaattttttatattgtttccatttgatgtcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="36295" stop="32087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35995" g_stop="35731" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35628" g_stop="35494" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="400" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34787" g_stop="34731" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="457" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293">
            <donor d_prob="0.902" d_score="0.96"/>
            <acceptor a_prob="0.678" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33437" g_stop="33303" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="592" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32607" g_stop="32393" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="807" r_length="215" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="808" polyA_stop="822"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E694330" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35995" e_stop="35731"/>
          <exon e_start="35628" e_stop="35494"/>
          <exon e_start="34787" e_stop="34731"/>
          <exon e_start="33437" e_stop="33303"/>
          <exon e_start="32607" e_stop="32393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCCGTAAGTGAAAATGCCTTTGCTGGTGCGATTCCATGGTTGCTAGGCTACACATTTCTTTGATCGTCTAAATGTCGAACAGGCATCCTAACTTTTAGTTTTCAGGTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAGGTACTTGCTTTCCTTATTCTTTAATCATTATTTCGGATGTATTTATAACTTACAACTCCCTCTATTCCAATTTGTTTGCCTTACTTTCCTTATTAGTCCGTTCACAAAAGGATGTCTCTTTCTCTTTTAACAATTCTTTAATTCCAACTTTCCATGTGGCTTGTTTAAGTCCACGAGATTAAAAGACATTTTTCTAAATTCTACATACCTTTAGTTTAAGACTGCAATATTGAAAAGGTTTCAATATAACTACATCTGGTTTAGTTTTCCTTCCTTTCTTAAACTCCGTTACCAAGACAAAATCAGACAAGCAAATCGAAACGGAGGGAGTATGTATTTGATTGACCGTAGAGATACATGCAACATCTCCAAAACTTCAATTTTCAAAAATCTATTGGCTGGTGTAATACTATTTATAAATGAAATTGGCTTAAAATCCCATTAAAAGTGCTTCAAAATAAAGTTCTTTTGATGAGGTTTTGAGTTTTCTGTATCCAATTTTAAAACCTGTTTCTTAGATGACCATTTCTTGATTATTATTTTTTTGTATGCTGTTTTAGATCAACTTAACCAATCAAGCTGACATGAAAAAGATCGTTCAAACAATTAACTATTCCAATTGTTGTTGCAAGTTTTCTTTTTGGCAGTTGTATATATGAACATTGTTTAGATGCTTAACTTGTATCTCTATATCCTCTTTATGTAGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAGGTGAGCTGATCTCTTTAGCATTCGTAATGAGATCGGTTGTTGTCATTAAACTATATCTACCATATGATTTGATGAATATTTTAAAATGTTCCCGGTGTGATACAAAGTTCTCAAACAGAAGTTCAGTAAGTGAAGAACCAAAGTTTGTTTATCTTATACTTTCCACTTGGGAGATGTCAGCACTCTGAAGAACGCACTTCAGTATTCTCTCATCTTTGAAAGCCGTGGCGGAATTTCCTTATTCTTCAGATACTTAAGATCTTATATCAAAGAGTTAATAGTCAAAAACACACCTAAAAAGTATCTCAGTTTTTCGAGTTTTACACCTGAACTATTAGGTAAGCGAGCTTCCTACTTGAACTATCACCAACTATTTATTAAAATACACCTCAACTATTAGATGTTTCCCTTTCCTACCTGAAATATCACCATCGCTCGGGTACACAAAGGGAATAATTGATAGTTGAGGTATGTTTGATAAACAGTTGGTGATAGTTCAAGTAGGAAACTCATCCACTTGATAGTTCAGGTATGAAACTCGAAAAACTTGGATATTTTAGAGTGTTTTTGACTCTTCACTTTATATGAAACAATCTAAATAGCCCCAATAAAGTTTCAGTTTGTCCATCCCTTCTTTTGTTTTCATCTTGGTTTCTCGTCGTGATTGGGGTTGGGCTTTTTGACGGAGCATATACCAGAAGGATGATATCAGATGTGATGCTGCAGCACTTCCCTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCGTCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAACTAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGCTATCTTCTACCTGATCTACTCAAAACTTTAGATTATATTCATCTCATTACCTTCATCACTTTTTGGTTAGTATTAGTTATGCTTGCTTTATAGACAGATCAGTTATAATCTTTTATTTCTTTCTTTTTCGGGATTATGGGTAAGGGTTTGTTAGGTGGGGTGGGATGGGGTGGGGGTGAGGTATGCCTCATCGCATTTTCTGTACACTATGACACTGTTATCCAATGCATATCATACAGGGGTGAACCTATTGTTTAAGCTACGAGTCCAGCTGAACCCTATAGCTTTGGCTTAGACCATGTATGTTTTAACCAGTGAATTAGATGGAATGTTGATAGAACTCCGAATACAAACCCATGATTCTAATTCTAGTTCCGTCTCTGATACCATATGTAGGATACTAACAAAAAAAGAGTAGTGTTATCATTGCTTCCTAGTCCTATTAAGGCTTTGCGTAAACCTCTATCTTAAGCTTATAAGAATCTCGGATATTATCAGTTGTGATGTTTATGAAGCACGTAGATATATCAAATTCTGCATTCCAGAAGTTGTTATGAACTTATAACGACAAATATCATGTCACTCTTGTGCATTATTCTGCCATTCCAAACCGAAAGTTTGTCTCACTATGCTTTTGATCGCGTTCTCTCTTGTTATATACCGCAGGCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCA</genome_strand>
        <mrna_strand>GGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCGGAGCATATTGTGAAGGAAAGAAGTTGCAAAATTCCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATACAAATGATCCGGATGATTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCT......................................................................................................GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGGGAAAAATCTTCTCGCGTTAAATGTTATGTGGAAATACAGGGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCTTTTCCGTTAACTGAAGAAGAATACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGTTGGGGAGCTGTTTCTCATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTACAGGCACAATTTTTTATATTGTTTCCATTTGATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235262" ref_strand="+" ref_description="SGN-E235262 [cLED-11-C13]">
      <seq>caaactctgctgcttctaccagaatgacgagttctctggggacccaccctcgtatctgctcgttaggaggaggtccagagcatattgtgaaggaaagaagctgcaaaatttcatgctttcgttatacagatgtagaatcttcttggaaagaattgtttccttcaaaaattcagaagttcaatagctgccgccacctaaatactagaaaatgctgggcagttttttccgctgcaaccggtgatgcaaatgatccggatgactcagaagatagtaagaatcctccagaaaatgaaaatgaatccgtaaataatgaaattttaaggggtaatcttgaaagaatcgtcgggcgggatgactctgcatttagcggaatagaccttgcagctctgataaggaataaatatggaaggtcctatgatgttcaattgattaagaaggaattcatggggaaaaatcttcttgcgttaaacgttatgtggaaatacagggagcagcgatcttttccgttaactgaagaagagtacctactgaggctagatgatgtggcaaacacattgaaatgctggggagctgtttcacatattcgtaatagccttgagaagttgaaagagcggcctcggatagggaaggcagtgagcattttcatcgatatggatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="38267" stop="32277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37967" g_stop="37946" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37945" i_stop="36011" i_length="1935">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36010" g_stop="35731" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="302" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35628" g_stop="35494" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="437" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34787" g_stop="34731" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="494" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33437" g_stop="33303" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="629" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32607" g_stop="32577" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="660" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E235262" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37967" e_stop="37946"/>
          <exon e_start="36010" e_stop="35731"/>
          <exon e_start="35628" e_stop="35494"/>
          <exon e_start="34787" e_stop="34731"/>
          <exon e_start="33437" e_stop="33303"/>
          <exon e_start="32607" e_stop="32577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTCTGCTGCTTCTACCAGGTATTTTTCTCTCCCACTTATTTATTATTATTTTTTTGTCAATTTTATCTAATTATCTGTTTTGAATCTTGATTTCTAAAGTTCCCTTTTTTATTTTGTTAGATTTTTTTGATGATTTATAGAAGGGGTTGTTGGAATTTTGGTTTGTTAAGTTTTTTTTGTAATGATGTGTGAAATATAGTTGTATGACAAGGGTTTTTTTTTTCTCATTGTGTATCAAAAGTAAGGTATGTGCTTAGTTAAAAGATACTTGATTTGAGGGGGTTTAGGATGTGAAGTTTATGGATTCGGGATTTTAGCACTTTTTTGAGTTGTTAGGTTGTAAATTTATAGTTTGTAAATATTGAAATGGAGTAGGTGGAGCTAGAAATTTAAAAGTTTTCTTTTTTATAGCTGTGGTGTACTTGCCAACTTGAGTGCTACCTCCCATCGACAACAGGTACATGTAGCTTCGTGTATTGTCTTTACTAGGATTTGAACCTGAAACCTCGCGAGTAGTAGGCCACACACCCTTGGGTACAGCTAGAAAATGAAGTTAATGGAGTTTGAATTTGACACCGAGTATATAACTTGTTTTATGAGTACATGGCTTGATTTACGAAATATTGGAAGTGCTCCTTGGAGAAGGTCCACGTTGATGCATTATGAAGTAGCTCTAGCTTCTTCTTCTTCTTCTTTTTTTCCTTTTTCAAATATAGCTATAATGAATTATGACAAGTTGATGTTGAATCAAATGATGTGCACTACCCTAGCTAAGAATAACTTGTAGCAGCTATAACATCCTACTTTATGAAAGAGCAAGAAAAGTTTGGACTATGGAGGAACAACGGTTTCCATGGTCAGTTTATGCTTATCCAGAAGGTGCAGGGGTTGGTTTCTGGTAGAACGAGCTTATCTTATACATGTTTTGTTGAAGAAGCTATGGTTTCGATCTGATTTGCCTGCACCTTATGTTTGAGCATGCGCTACCATGAACTAAGTACAGGTGTTGGACATCAGGTGTGTGTTATGGCCTTATGGCGTTAAAATTGTCAAAGCTTATGCATATAAAATATGTATATACACACAAAGTGTTGGATGGAGGCGCAAGGATACAATAATAAGCATGAAAATTGATGTGTGTTAGGCTATGTTGCTCCGACTCTCCAAAATATTACCATACTTGTGCTGGATTTTCCAAAAAATGCACTACTTTTGAAGAGTCGGCACACAATCGTCGACATTTTCAAAGAGTCCGAGCGACATTGCTGCTTAGCATCTTCTTGATACATAGGGTGAATGGCTTTTAGACTCATGTATAGTTAGTGTAACCTAAAAATAATTCTTTTGATGAGTCTATACTGAGTAGTCCAGAGTTTATTCTTGTTGAAATATCTATAACTTCAGTGCTTAAGCGCGCCTTTGAAAATCTTGTTATCAACCCTTGTTTACCCCTCTTTCTTTAGTTAATTCATTTCAATATACTAGCTATCTAATATCTTCTTATTATGCCTACGATTGATTAAGCAAAAAAAAAAAAATTGTTTCTTCACTTAGCCATTGATGTATGGCCTAATTGCTTCTTAAAACTCTCTAGTTCTATATTGTTACTGGTTTTCTACATGTGGAGGTTAGATTTTATGAATCTGCACAAAACTGTGATCGTAAAAGTTTTTGTATCCTAACATAGTGAATTGTTAAATCTACAAATTGTAAATTACTTTAACGTAACCAACCGTCTTATCACGTGCAATCTTATTGCTTTGTTTATGCTGCTACACAAACAATAGAAAATTTAATGTCGAGGCGTTCATGTCTAATGGCATTACATATTGTATCTTTAAAGTTAGGAATAAAAGTTCATACCTTTACATGTGTCTTCCTATTTGGTGTTTCAGAAATTTCCAAATAAATTTTCCTTGGTCAGTAACTCGTGCTTTGATGCCAAACTTTCAGAATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCCGTAAGTGAAAATGCCTTTGCTGGTGCGATTCCATGGTTGCTAGGCTACACATTTCTTTGATCGTCTAAATGTCGAACAGGCATCCTAACTTTTAGTTTTCAGGTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAGGTACTTGCTTTCCTTATTCTTTAATCATTATTTCGGATGTATTTATAACTTACAACTCCCTCTATTCCAATTTGTTTGCCTTACTTTCCTTATTAGTCCGTTCACAAAAGGATGTCTCTTTCTCTTTTAACAATTCTTTAATTCCAACTTTCCATGTGGCTTGTTTAAGTCCACGAGATTAAAAGACATTTTTCTAAATTCTACATACCTTTAGTTTAAGACTGCAATATTGAAAAGGTTTCAATATAACTACATCTGGTTTAGTTTTCCTTCCTTTCTTAAACTCCGTTACCAAGACAAAATCAGACAAGCAAATCGAAACGGAGGGAGTATGTATTTGATTGACCGTAGAGATACATGCAACATCTCCAAAACTTCAATTTTCAAAAATCTATTGGCTGGTGTAATACTATTTATAAATGAAATTGGCTTAAAATCCCATTAAAAGTGCTTCAAAATAAAGTTCTTTTGATGAGGTTTTGAGTTTTCTGTATCCAATTTTAAAACCTGTTTCTTAGATGACCATTTCTTGATTATTATTTTTTTGTATGCTGTTTTAGATCAACTTAACCAATCAAGCTGACATGAAAAAGATCGTTCAAACAATTAACTATTCCAATTGTTGTTGCAAGTTTTCTTTTTGGCAGTTGTATATATGAACATTGTTTAGATGCTTAACTTGTATCTCTATATCCTCTTTATGTAGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAGGTGAGCTGATCTCTTTAGCATTCGTAATGAGATCGGTTGTTGTCATTAAACTATATCTACCATATGATTTGATGAATATTTTAAAATGTTCCCGGTGTGATACAAAGTTCTCAAACAGAAGTTCAGTAAGTGAAGAACCAAAGTTTGTTTATCTTATACTTTCCACTTGGGAGATGTCAGCACTCTGAAGAACGCACTTCAGTATTCTCTCATCTTTGAAAGCCGTGGCGGAATTTCCTTATTCTTCAGATACTTAAGATCTTATATCAAAGAGTTAATAGTCAAAAACACACCTAAAAAGTATCTCAGTTTTTCGAGTTTTACACCTGAACTATTAGGTAAGCGAGCTTCCTACTTGAACTATCACCAACTATTTATTAAAATACACCTCAACTATTAGATGTTTCCCTTTCCTACCTGAAATATCACCATCGCTCGGGTACACAAAGGGAATAATTGATAGTTGAGGTATGTTTGATAAACAGTTGGTGATAGTTCAAGTAGGAAACTCATCCACTTGATAGTTCAGGTATGAAACTCGAAAAACTTGGATATTTTAGAGTGTTTTTGACTCTTCACTTTATATGAAACAATCTAAATAGCCCCAATAAAGTTTCAGTTTGTCCATCCCTTCTTTTGTTTTCATCTTGGTTTCTCGTCGTGATTGGGGTTGGGCTTTTTGACGGAGCATATACCAGAAGGATGATATCAGATGTGATGCTGCAGCACTTCCCTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCGTCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAACTAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGCTATCTTCTACCTGATCTACTCAAAACTTTAGATTATATTCATCTCATTACCTTCATCACTTTTTGGTTAGTATTAGTTATGCTTGCTTTATAGACAGATCAGTTATAATCTTTTATTTCTTTCTTTTTCGGGATTATGGGTAAGGGTTTGTTAGGTGGGGTGGGATGGGGTGGGGGTGAGGTATGCCTCATCGCATTTTCTGTACACTATGACACTGTTATCCAATGCATATCATACAGGGGTGAACCTATTGTTTAAGCTACGAGTCCAGCTGAACCCTATAGCTTTGGCTTAGACCATGTATGTTTTAACCAGTGAATTAGATGGAATGTTGATAGAACTCCGAATACAAACCCATGATTCTAATTCTAGTTCCGTCTCTGATACCATATGTAGGATACTAACAAAAAAAGAGTAGTGTTATCATTGCTTCCTAGTCCTATTAAGGCTTTGCGTAAACCTCTATCTTAAGCTTATAAGAATCTCGGATATTATCAGTTGTGATGTTTATGAAGCACGTAGATATATCAAATTCTGCATTCCAGAAGTTGTTATGAACTTATAACGACAAATATCATGTCACTCTTGTGCATTATTCTGCCATTCCAAACCGAAAGTTTGTCTCACTATGCTTTTGATCGCGTTCTCTCTTGTTATATACCGCAGGCAGTGAGCATTTTCATCGATATGGATGAAT</genome_strand>
        <mrna_strand>CAAACTCTGCTGCTTCTACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCC......................................................................................................GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGAGCATTTTCATCGATATGGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434800" ref_strand="+" ref_description="SGN-E434800 [STM-60-B9]">
      <seq>ctttctaaaccttgtccccaagtgtttaagaagatgaatatatcttacaattcagaaagagatataagttaaaggtgattacttggaatgatattgaacatttaacattaaccaaagaccgagagatgaacttaatttagcttaactaaattctgctgatacactagatgagatgctaatattaattttctcgagacagcatgctaactactgctctcctgcagctatctcgaatagttgaggtgacttggtctgtgatatctgacattgtgtattgatcaaataaagtgaacatctgacttagaaataaactgaacttttggcgttagaaatgagttttattacttaccctgataagttgaaagaaacaacttagtatgttcgagtgacctttttcccccttttttctggaaaatgatatcaaaatcctttgggatctgttaaaacacaaaatcacaaattgtaactgttagaatgtgttgaaattcagtttagaattttaaaaaattactgtgatttccgtctaatgtgccttgatgatttgttttaaagcgatcttttccgttaactgaagaagagtacctactgaggctagatgatgtggcaaacacattgaaatgttggggagctgtttcgcatattcgtaatagccttgagaagttgaaagagcggcctcgggatagggaaggtaaattagttctagctgatacttgatgatatcttctacctgatctactcaaaacgtttgattatattaatctcattaccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="34297" stop="32920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33997" g_stop="33220" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E434800" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33997" e_stop="33220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCG-TCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAAC-TAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTC-GGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGCTATCTTCTACCTGATCTACTCAAAACTTTAGATTATATTCATCTCATTACCTTC</genome_strand>
        <mrna_strand>CTTTCTAAACCTTGTCCCCAAGTGTTTAAGAAGATGAATATATCTTACAATTCAGAAAGAGATATAAGTTAAAGGTGATTACTTGGAATGATATTGAACATTTAACATTAACCAAA-GACCGAGAGATGAAC-T-T-AATTTAGCTTAACTAAATTCTGCTGATACACTAGATGAGATGCTAATATTAATTTTCTCGAGACAGCATGCTAACTACTGCTCTCCTGCAGCTATCTCGAATAGTTGAGGTGACTTGGTCTGTGATATCTGACATTGTGT-AT-TGATCAAATAAAGTGAACATCTGACTTAGAAATAAACTGAACTTTTGGCGTTAGAAATGAGTTTTATTACTTACCCTGATAAGTTGAAAGAAACAACTTAGTATGTTCGAGTGACCTTTTTCCCCCTTTTTTCTGGAAAATGATATCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAA--TGT-GTTGAAATTCAGTTTAGAATTTTAAAAAATTACTGTGATTTCCGTCTAATGTGCCTTGATGATT-TGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGTTGGGGAGCTGTTTCGCATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGATATCTTCTACCTGATCTACTCAAAACGTTTGATTATATTAATCTCATTACCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293748" ref_strand="+" ref_description="SGN-E293748 [cLET-21-I13]">
      <seq>cagaatgacgagttctctggggattcaccctcgtatctgctcgttaggaggaggtccagagcatattgtgaaggaaagaagctgcaaaatttcatgctttcgttatacagatgtagaatcttcttggaaagaattgtttccttcaaaaattcagaagttcaatagctgccgccacctaaatactagaaaatgctgggcagttttttccgctgcaaccggtgatgcaaatgatccggatgactcagaagatagtaagaatcctccagaaaatgaaaatgaatccgtaaataatgaaattttaaggggtaatcttgaaagaatcgtcgggcgggatgactctgcatttagcggaatagaccttgcagctctgataaggaataaatatggaaggtcctatgatgttcaattgattaagaaggaattcatggggaaaaatcttcttgcgttaaacgttatgtggaaatacagggagcagcgatcttttccgttaactgaagaagagtacctactgaggctagatgatgtggcaaacacattgaaatgctggggagctgtttcacatattcgtaatagccttgagaagttgaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="36313" stop="33021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36013" g_stop="35731" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35628" g_stop="35494" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="418" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34787" g_stop="34731" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="475" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33437" g_stop="33321" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="592" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E293748" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36013" e_stop="35731"/>
          <exon e_start="35628" e_stop="35494"/>
          <exon e_start="34787" e_stop="34731"/>
          <exon e_start="33437" e_stop="33321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCCGTAAGTGAAAATGCCTTTGCTGGTGCGATTCCATGGTTGCTAGGCTACACATTTCTTTGATCGTCTAAATGTCGAACAGGCATCCTAACTTTTAGTTTTCAGGTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAGGTACTTGCTTTCCTTATTCTTTAATCATTATTTCGGATGTATTTATAACTTACAACTCCCTCTATTCCAATTTGTTTGCCTTACTTTCCTTATTAGTCCGTTCACAAAAGGATGTCTCTTTCTCTTTTAACAATTCTTTAATTCCAACTTTCCATGTGGCTTGTTTAAGTCCACGAGATTAAAAGACATTTTTCTAAATTCTACATACCTTTAGTTTAAGACTGCAATATTGAAAAGGTTTCAATATAACTACATCTGGTTTAGTTTTCCTTCCTTTCTTAAACTCCGTTACCAAGACAAAATCAGACAAGCAAATCGAAACGGAGGGAGTATGTATTTGATTGACCGTAGAGATACATGCAACATCTCCAAAACTTCAATTTTCAAAAATCTATTGGCTGGTGTAATACTATTTATAAATGAAATTGGCTTAAAATCCCATTAAAAGTGCTTCAAAATAAAGTTCTTTTGATGAGGTTTTGAGTTTTCTGTATCCAATTTTAAAACCTGTTTCTTAGATGACCATTTCTTGATTATTATTTTTTTGTATGCTGTTTTAGATCAACTTAACCAATCAAGCTGACATGAAAAAGATCGTTCAAACAATTAACTATTCCAATTGTTGTTGCAAGTTTTCTTTTTGGCAGTTGTATATATGAACATTGTTTAGATGCTTAACTTGTATCTCTATATCCTCTTTATGTAGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAGGTGAGCTGATCTCTTTAGCATTCGTAATGAGATCGGTTGTTGTCATTAAACTATATCTACCATATGATTTGATGAATATTTTAAAATGTTCCCGGTGTGATACAAAGTTCTCAAACAGAAGTTCAGTAAGTGAAGAACCAAAGTTTGTTTATCTTATACTTTCCACTTGGGAGATGTCAGCACTCTGAAGAACGCACTTCAGTATTCTCTCATCTTTGAAAGCCGTGGCGGAATTTCCTTATTCTTCAGATACTTAAGATCTTATATCAAAGAGTTAATAGTCAAAAACACACCTAAAAAGTATCTCAGTTTTTCGAGTTTTACACCTGAACTATTAGGTAAGCGAGCTTCCTACTTGAACTATCACCAACTATTTATTAAAATACACCTCAACTATTAGATGTTTCCCTTTCCTACCTGAAATATCACCATCGCTCGGGTACACAAAGGGAATAATTGATAGTTGAGGTATGTTTGATAAACAGTTGGTGATAGTTCAAGTAGGAAACTCATCCACTTGATAGTTCAGGTATGAAACTCGAAAAACTTGGATATTTTAGAGTGTTTTTGACTCTTCACTTTATATGAAACAATCTAAATAGCCCCAATAAAGTTTCAGTTTGTCCATCCCTTCTTTTGTTTTCATCTTGGTTTCTCGTCGTGATTGGGGTTGGGCTTTTTGACGGAGCATATACCAGAAGGATGATATCAGATGTGATGCTGCAGCACTTCCCTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCGTCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAACTAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAG</genome_strand>
        <mrna_strand>CAGAATGACGAGTTCTCTGGGGATTCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCC......................................................................................................GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409070" ref_strand="+" ref_description="SGN-E409070 [PPI-13-C19]">
      <seq>ctttctaaaccttgtccccaagtgtttaagaagatgaatatatcttacaattcagaaagagatataagttaaaggtgattacttggaatgatattgaacatttaacattaaccaaagaccgagagatgaacttaatttagcttaactaaattctgctgatacactagatgagatgctaatattaattttctcgagacagcatgctaactactgctctcctgcagctatctcgaatagttgaggtgacttggtctgtgatatctgacattgtgtattgatcaaataaagtgaacatctgacttagaaataaactgaacttttggcgttagaaatgagttttattacttaccctgataagttgaaagaaacaacttagtatgttcgagtgacctttttcccccttttttctggaaaatgatatcaaaatcctttgggatctgttaaaacacaaaatcacaaattgtaactgttagaatgtgttgaaattcagtttagaattttaaaaaattactgtgatttccgtctaatgtgccttgatgatttgttttaaagcgatcttttccgttaactgaagaagagtacctactgaagctagatgatgtggcnaacacattgaaatgttggggagctgtttcgcatattcgtaatagccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="34297" stop="33035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33997" g_stop="33335" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E409070" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33997" e_stop="33335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCG-TCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAAC-TAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTG</genome_strand>
        <mrna_strand>CTTTCTAAACCTTGTCCCCAAGTGTTTAAGAAGATGAATATATCTTACAATTCAGAAAGAGATATAAGTTAAAGGTGATTACTTGGAATGATATTGAACATTTAACATTAACCAAA-GACCGAGAGATGAAC-T-T-AATTTAGCTTAACTAAATTCTGCTGATACACTAGATGAGATGCTAATATTAATTTTCTCGAGACAGCATGCTAACTACTGCTCTCCTGCAGCTATCTCGAATAGTTGAGGTGACTTGGTCTGTGATATCTGACATTGTGT-AT-TGATCAAATAAAGTGAACATCTGACTTAGAAATAAACTGAACTTTTGGCGTTAGAAATGAGTTTTATTACTTACCCTGATAAGTTGAAAGAAACAACTTAGTATGTTCGAGTGACCTTTTTCCCCCTTTTTTCTGGAAAATGATATCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAA--TGT-GTTGAAATTCAGTTTAGAATTTTAAAAAATTACTGTGATTTCCGTCTAATGTGCCTTGATGATT-TGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAAGCTAGATGATGTGGCNAACACATTGAAATGTTGGGGAGCTGTTTCGCATATTCGTAATAGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283017" ref_strand="+" ref_description="SGN-E283017 [cLER-17-D9]">
      <seq>ggggacccaccctcgtatctgctcgttaggaggaggtccagagcatattgtgaaggaaagaagctgcaaaatttcatgctttcgttatacagatgtagaatcttcttggaaagaattgtttccttcaaaaattcagaagttcaatagctgccgccacctaaatactagaaaatgctgggcagttttttccgctgcaaccggtgatgcaaatgatccggatgactcagaagatagtaagaatcctccagaaaatgaaaatgaatccgtaaataatgaaattttaaggggtaatcttgaaagaatcgtcgggcgggatgactctgcatttagcggaatagaccttgcagctctgataaggaataaatatggaaggtcctatgatgttcaattgattaagaaggaattcatggggaaaaatcttcttgcgttaaacgttatgtggaaatacagggagcagcgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="36295" stop="34431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35995" g_stop="35731" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35628" g_stop="35494" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="400" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34787" g_stop="34731" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="457" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E283017" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35995" e_stop="35731"/>
          <exon e_start="35628" e_stop="35494"/>
          <exon e_start="34787" e_stop="34731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCCGTAAGTGAAAATGCCTTTGCTGGTGCGATTCCATGGTTGCTAGGCTACACATTTCTTTGATCGTCTAAATGTCGAACAGGCATCCTAACTTTTAGTTTTCAGGTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAGGTACTTGCTTTCCTTATTCTTTAATCATTATTTCGGATGTATTTATAACTTACAACTCCCTCTATTCCAATTTGTTTGCCTTACTTTCCTTATTAGTCCGTTCACAAAAGGATGTCTCTTTCTCTTTTAACAATTCTTTAATTCCAACTTTCCATGTGGCTTGTTTAAGTCCACGAGATTAAAAGACATTTTTCTAAATTCTACATACCTTTAGTTTAAGACTGCAATATTGAAAAGGTTTCAATATAACTACATCTGGTTTAGTTTTCCTTCCTTTCTTAAACTCCGTTACCAAGACAAAATCAGACAAGCAAATCGAAACGGAGGGAGTATGTATTTGATTGACCGTAGAGATACATGCAACATCTCCAAAACTTCAATTTTCAAAAATCTATTGGCTGGTGTAATACTATTTATAAATGAAATTGGCTTAAAATCCCATTAAAAGTGCTTCAAAATAAAGTTCTTTTGATGAGGTTTTGAGTTTTCTGTATCCAATTTTAAAACCTGTTTCTTAGATGACCATTTCTTGATTATTATTTTTTTGTATGCTGTTTTAGATCAACTTAACCAATCAAGCTGACATGAAAAAGATCGTTCAAACAATTAACTATTCCAATTGTTGTTGCAAGTTTTCTTTTTGGCAGTTGTATATATGAACATTGTTTAGATGCTTAACTTGTATCTCTATATCCTCTTTATGTAGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAG</genome_strand>
        <mrna_strand>GGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCC......................................................................................................GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290179" ref_strand="+" ref_description="SGN-E290179 [cLET-5-I19]">
      <seq>aacaacaaactctgctgcttctaccagaatgacgagttctctggggacccaccctcgtatctgctcgttaggaggaggtccagagcatattgtgaaggaaagaagctgcaaaatttcatgctttcgttatacagatgtagaatcttcttggaaagaattgtttccttcaaaaattcagaagttcaatagctgccgccacctaaatactagaaaatgctgggcagttttttccgctgcaaccggtgatgcaaatgatccggatgactcagaagatagtaagaatcctccagaaaatgaaaatgaatccgtaaataatgaaattttaaggggtaatcttgaaagaatcgtcgggcgggatgactctgcatttagcggaatagaccttgcagctctgataaggaataaatatggaaggtcctatgatgttcaattgattaagaaggaattcatggggaaaaatcttcttgcgttaaacgttatgtggaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="38272" stop="34440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37972" g_stop="37946" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37945" i_stop="36011" i_length="1935">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36010" g_stop="35731" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="307" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35628" g_stop="35494" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="442" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34787" g_stop="34740" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="490" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E290179" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37972" e_stop="37946"/>
          <exon e_start="36010" e_stop="35731"/>
          <exon e_start="35628" e_stop="35494"/>
          <exon e_start="34787" e_stop="34740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAAACTCTGCTGCTTCTACCAGGTATTTTTCTCTCCCACTTATTTATTATTATTTTTTTGTCAATTTTATCTAATTATCTGTTTTGAATCTTGATTTCTAAAGTTCCCTTTTTTATTTTGTTAGATTTTTTTGATGATTTATAGAAGGGGTTGTTGGAATTTTGGTTTGTTAAGTTTTTTTTGTAATGATGTGTGAAATATAGTTGTATGACAAGGGTTTTTTTTTTCTCATTGTGTATCAAAAGTAAGGTATGTGCTTAGTTAAAAGATACTTGATTTGAGGGGGTTTAGGATGTGAAGTTTATGGATTCGGGATTTTAGCACTTTTTTGAGTTGTTAGGTTGTAAATTTATAGTTTGTAAATATTGAAATGGAGTAGGTGGAGCTAGAAATTTAAAAGTTTTCTTTTTTATAGCTGTGGTGTACTTGCCAACTTGAGTGCTACCTCCCATCGACAACAGGTACATGTAGCTTCGTGTATTGTCTTTACTAGGATTTGAACCTGAAACCTCGCGAGTAGTAGGCCACACACCCTTGGGTACAGCTAGAAAATGAAGTTAATGGAGTTTGAATTTGACACCGAGTATATAACTTGTTTTATGAGTACATGGCTTGATTTACGAAATATTGGAAGTGCTCCTTGGAGAAGGTCCACGTTGATGCATTATGAAGTAGCTCTAGCTTCTTCTTCTTCTTCTTTTTTTCCTTTTTCAAATATAGCTATAATGAATTATGACAAGTTGATGTTGAATCAAATGATGTGCACTACCCTAGCTAAGAATAACTTGTAGCAGCTATAACATCCTACTTTATGAAAGAGCAAGAAAAGTTTGGACTATGGAGGAACAACGGTTTCCATGGTCAGTTTATGCTTATCCAGAAGGTGCAGGGGTTGGTTTCTGGTAGAACGAGCTTATCTTATACATGTTTTGTTGAAGAAGCTATGGTTTCGATCTGATTTGCCTGCACCTTATGTTTGAGCATGCGCTACCATGAACTAAGTACAGGTGTTGGACATCAGGTGTGTGTTATGGCCTTATGGCGTTAAAATTGTCAAAGCTTATGCATATAAAATATGTATATACACACAAAGTGTTGGATGGAGGCGCAAGGATACAATAATAAGCATGAAAATTGATGTGTGTTAGGCTATGTTGCTCCGACTCTCCAAAATATTACCATACTTGTGCTGGATTTTCCAAAAAATGCACTACTTTTGAAGAGTCGGCACACAATCGTCGACATTTTCAAAGAGTCCGAGCGACATTGCTGCTTAGCATCTTCTTGATACATAGGGTGAATGGCTTTTAGACTCATGTATAGTTAGTGTAACCTAAAAATAATTCTTTTGATGAGTCTATACTGAGTAGTCCAGAGTTTATTCTTGTTGAAATATCTATAACTTCAGTGCTTAAGCGCGCCTTTGAAAATCTTGTTATCAACCCTTGTTTACCCCTCTTTCTTTAGTTAATTCATTTCAATATACTAGCTATCTAATATCTTCTTATTATGCCTACGATTGATTAAGCAAAAAAAAAAAAATTGTTTCTTCACTTAGCCATTGATGTATGGCCTAATTGCTTCTTAAAACTCTCTAGTTCTATATTGTTACTGGTTTTCTACATGTGGAGGTTAGATTTTATGAATCTGCACAAAACTGTGATCGTAAAAGTTTTTGTATCCTAACATAGTGAATTGTTAAATCTACAAATTGTAAATTACTTTAACGTAACCAACCGTCTTATCACGTGCAATCTTATTGCTTTGTTTATGCTGCTACACAAACAATAGAAAATTTAATGTCGAGGCGTTCATGTCTAATGGCATTACATATTGTATCTTTAAAGTTAGGAATAAAAGTTCATACCTTTACATGTGTCTTCCTATTTGGTGTTTCAGAAATTTCCAAATAAATTTTCCTTGGTCAGTAACTCGTGCTTTGATGCCAAACTTTCAGAATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCCGTAAGTGAAAATGCCTTTGCTGGTGCGATTCCATGGTTGCTAGGCTACACATTTCTTTGATCGTCTAAATGTCGAACAGGCATCCTAACTTTTAGTTTTCAGGTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAGGTACTTGCTTTCCTTATTCTTTAATCATTATTTCGGATGTATTTATAACTTACAACTCCCTCTATTCCAATTTGTTTGCCTTACTTTCCTTATTAGTCCGTTCACAAAAGGATGTCTCTTTCTCTTTTAACAATTCTTTAATTCCAACTTTCCATGTGGCTTGTTTAAGTCCACGAGATTAAAAGACATTTTTCTAAATTCTACATACCTTTAGTTTAAGACTGCAATATTGAAAAGGTTTCAATATAACTACATCTGGTTTAGTTTTCCTTCCTTTCTTAAACTCCGTTACCAAGACAAAATCAGACAAGCAAATCGAAACGGAGGGAGTATGTATTTGATTGACCGTAGAGATACATGCAACATCTCCAAAACTTCAATTTTCAAAAATCTATTGGCTGGTGTAATACTATTTATAAATGAAATTGGCTTAAAATCCCATTAAAAGTGCTTCAAAATAAAGTTCTTTTGATGAGGTTTTGAGTTTTCTGTATCCAATTTTAAAACCTGTTTCTTAGATGACCATTTCTTGATTATTATTTTTTTGTATGCTGTTTTAGATCAACTTAACCAATCAAGCTGACATGAAAAAGATCGTTCAAACAATTAACTATTCCAATTGTTGTTGCAAGTTTTCTTTTTGGCAGTTGTATATATGAACATTGTTTAGATGCTTAACTTGTATCTCTATATCCTCTTTATGTAGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATAC</genome_strand>
        <mrna_strand>AACAACAAACTCTGCTGCTTCTACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCC......................................................................................................GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292928" ref_strand="+" ref_description="SGN-E292928 [cLET-11-H8]">
      <seq>tctggggcctcacaacaacaaactctgctgcttctaccagaatgacgagttctctggggacccaccctcgtatctgctcgttaggaggaggtccagagcatattgtgaaggaaagaagctgcaaaatttcatgctttcgttatacagatgtagaatcttcttggaaagaattgtttccttcaaaaattcagaagttcaatagctgccgccacctaaatactagaaaatgctgggcagttttttccgctgcaaccggtgatgcaaatgatccggatgactcagaagatagtaagaatcctccagaaaatgaaaatgaatccgtaaataatgaaattttaaggggtaatcttgaaagaatcgtcgggcgggatgactctgcatttagcggaatagaccttgcagctctgataaggaataaatatggaaggtcctatgatgttcaattgattaagaaggaattcatggggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="38285" stop="34471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37985" g_stop="37946" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37945" i_stop="36011" i_length="1935">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36010" g_stop="35731" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="320" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35628" g_stop="35494" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="455" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34787" g_stop="34771" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="472" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E292928" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37985" e_stop="37946"/>
          <exon e_start="36010" e_stop="35731"/>
          <exon e_start="35628" e_stop="35494"/>
          <exon e_start="34787" e_stop="34771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGGGCCTCACAACAACAAACTCTGCTGCTTCTACCAGGTATTTTTCTCTCCCACTTATTTATTATTATTTTTTTGTCAATTTTATCTAATTATCTGTTTTGAATCTTGATTTCTAAAGTTCCCTTTTTTATTTTGTTAGATTTTTTTGATGATTTATAGAAGGGGTTGTTGGAATTTTGGTTTGTTAAGTTTTTTTTGTAATGATGTGTGAAATATAGTTGTATGACAAGGGTTTTTTTTTTCTCATTGTGTATCAAAAGTAAGGTATGTGCTTAGTTAAAAGATACTTGATTTGAGGGGGTTTAGGATGTGAAGTTTATGGATTCGGGATTTTAGCACTTTTTTGAGTTGTTAGGTTGTAAATTTATAGTTTGTAAATATTGAAATGGAGTAGGTGGAGCTAGAAATTTAAAAGTTTTCTTTTTTATAGCTGTGGTGTACTTGCCAACTTGAGTGCTACCTCCCATCGACAACAGGTACATGTAGCTTCGTGTATTGTCTTTACTAGGATTTGAACCTGAAACCTCGCGAGTAGTAGGCCACACACCCTTGGGTACAGCTAGAAAATGAAGTTAATGGAGTTTGAATTTGACACCGAGTATATAACTTGTTTTATGAGTACATGGCTTGATTTACGAAATATTGGAAGTGCTCCTTGGAGAAGGTCCACGTTGATGCATTATGAAGTAGCTCTAGCTTCTTCTTCTTCTTCTTTTTTTCCTTTTTCAAATATAGCTATAATGAATTATGACAAGTTGATGTTGAATCAAATGATGTGCACTACCCTAGCTAAGAATAACTTGTAGCAGCTATAACATCCTACTTTATGAAAGAGCAAGAAAAGTTTGGACTATGGAGGAACAACGGTTTCCATGGTCAGTTTATGCTTATCCAGAAGGTGCAGGGGTTGGTTTCTGGTAGAACGAGCTTATCTTATACATGTTTTGTTGAAGAAGCTATGGTTTCGATCTGATTTGCCTGCACCTTATGTTTGAGCATGCGCTACCATGAACTAAGTACAGGTGTTGGACATCAGGTGTGTGTTATGGCCTTATGGCGTTAAAATTGTCAAAGCTTATGCATATAAAATATGTATATACACACAAAGTGTTGGATGGAGGCGCAAGGATACAATAATAAGCATGAAAATTGATGTGTGTTAGGCTATGTTGCTCCGACTCTCCAAAATATTACCATACTTGTGCTGGATTTTCCAAAAAATGCACTACTTTTGAAGAGTCGGCACACAATCGTCGACATTTTCAAAGAGTCCGAGCGACATTGCTGCTTAGCATCTTCTTGATACATAGGGTGAATGGCTTTTAGACTCATGTATAGTTAGTGTAACCTAAAAATAATTCTTTTGATGAGTCTATACTGAGTAGTCCAGAGTTTATTCTTGTTGAAATATCTATAACTTCAGTGCTTAAGCGCGCCTTTGAAAATCTTGTTATCAACCCTTGTTTACCCCTCTTTCTTTAGTTAATTCATTTCAATATACTAGCTATCTAATATCTTCTTATTATGCCTACGATTGATTAAGCAAAAAAAAAAAAATTGTTTCTTCACTTAGCCATTGATGTATGGCCTAATTGCTTCTTAAAACTCTCTAGTTCTATATTGTTACTGGTTTTCTACATGTGGAGGTTAGATTTTATGAATCTGCACAAAACTGTGATCGTAAAAGTTTTTGTATCCTAACATAGTGAATTGTTAAATCTACAAATTGTAAATTACTTTAACGTAACCAACCGTCTTATCACGTGCAATCTTATTGCTTTGTTTATGCTGCTACACAAACAATAGAAAATTTAATGTCGAGGCGTTCATGTCTAATGGCATTACATATTGTATCTTTAAAGTTAGGAATAAAAGTTCATACCTTTACATGTGTCTTCCTATTTGGTGTTTCAGAAATTTCCAAATAAATTTTCCTTGGTCAGTAACTCGTGCTTTGATGCCAAACTTTCAGAATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCCGTAAGTGAAAATGCCTTTGCTGGTGCGATTCCATGGTTGCTAGGCTACACATTTCTTTGATCGTCTAAATGTCGAACAGGCATCCTAACTTTTAGTTTTCAGGTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAGGTACTTGCTTTCCTTATTCTTTAATCATTATTTCGGATGTATTTATAACTTACAACTCCCTCTATTCCAATTTGTTTGCCTTACTTTCCTTATTAGTCCGTTCACAAAAGGATGTCTCTTTCTCTTTTAACAATTCTTTAATTCCAACTTTCCATGTGGCTTGTTTAAGTCCACGAGATTAAAAGACATTTTTCTAAATTCTACATACCTTTAGTTTAAGACTGCAATATTGAAAAGGTTTCAATATAACTACATCTGGTTTAGTTTTCCTTCCTTTCTTAAACTCCGTTACCAAGACAAAATCAGACAAGCAAATCGAAACGGAGGGAGTATGTATTTGATTGACCGTAGAGATACATGCAACATCTCCAAAACTTCAATTTTCAAAAATCTATTGGCTGGTGTAATACTATTTATAAATGAAATTGGCTTAAAATCCCATTAAAAGTGCTTCAAAATAAAGTTCTTTTGATGAGGTTTTGAGTTTTCTGTATCCAATTTTAAAACCTGTTTCTTAGATGACCATTTCTTGATTATTATTTTTTTGTATGCTGTTTTAGATCAACTTAACCAATCAAGCTGACATGAAAAAGATCGTTCAAACAATTAACTATTCCAATTGTTGTTGCAAGTTTTCTTTTTGGCAGTTGTATATATGAACATTGTTTAGATGCTTAACTTGTATCTCTATATCCTCTTTATGTAGGAATTCATGGGGAAAAA</genome_strand>
        <mrna_strand>TCTGGGGCCTCACAACAACAAACTCTGCTGCTTCTACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCC......................................................................................................GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCATGGGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282008" ref_strand="+" ref_description="SGN-E282008 [cLES-2-D23]">
      <seq>tcacaacaacaaactctgctgcttctaccagaatgacgagttctctggggacccaccctcgtatctgctcgttaggaggaggtccagagcatattgtgaaggaaagaagctgcaaaatttcatgctttcgttatacagatgtagaatcttcttggaaagaattgtttccttcaaaaattcagaagttcaatagctgccgccacctaaatactagaaaatgctgggcagttttttccgctgcaaccggtgatgcaaatgatccggatgactcagaagatagtaagaatcctccagaaaatgaaaatgaatccgtaaataatgaaattttaaggggtaatcttgaaagaatcgtcgggcgggatgactctgcatttagcggaatagaccttgcagctctgataaggaataaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="38276" stop="35227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37976" g_stop="37946" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37945" i_stop="36011" i_length="1935">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36010" g_stop="35731" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="311" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35628" g_stop="35527" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="413" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E282008" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37976" e_stop="37946"/>
          <exon e_start="36010" e_stop="35731"/>
          <exon e_start="35628" e_stop="35527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAACAACAAACTCTGCTGCTTCTACCAGGTATTTTTCTCTCCCACTTATTTATTATTATTTTTTTGTCAATTTTATCTAATTATCTGTTTTGAATCTTGATTTCTAAAGTTCCCTTTTTTATTTTGTTAGATTTTTTTGATGATTTATAGAAGGGGTTGTTGGAATTTTGGTTTGTTAAGTTTTTTTTGTAATGATGTGTGAAATATAGTTGTATGACAAGGGTTTTTTTTTTCTCATTGTGTATCAAAAGTAAGGTATGTGCTTAGTTAAAAGATACTTGATTTGAGGGGGTTTAGGATGTGAAGTTTATGGATTCGGGATTTTAGCACTTTTTTGAGTTGTTAGGTTGTAAATTTATAGTTTGTAAATATTGAAATGGAGTAGGTGGAGCTAGAAATTTAAAAGTTTTCTTTTTTATAGCTGTGGTGTACTTGCCAACTTGAGTGCTACCTCCCATCGACAACAGGTACATGTAGCTTCGTGTATTGTCTTTACTAGGATTTGAACCTGAAACCTCGCGAGTAGTAGGCCACACACCCTTGGGTACAGCTAGAAAATGAAGTTAATGGAGTTTGAATTTGACACCGAGTATATAACTTGTTTTATGAGTACATGGCTTGATTTACGAAATATTGGAAGTGCTCCTTGGAGAAGGTCCACGTTGATGCATTATGAAGTAGCTCTAGCTTCTTCTTCTTCTTCTTTTTTTCCTTTTTCAAATATAGCTATAATGAATTATGACAAGTTGATGTTGAATCAAATGATGTGCACTACCCTAGCTAAGAATAACTTGTAGCAGCTATAACATCCTACTTTATGAAAGAGCAAGAAAAGTTTGGACTATGGAGGAACAACGGTTTCCATGGTCAGTTTATGCTTATCCAGAAGGTGCAGGGGTTGGTTTCTGGTAGAACGAGCTTATCTTATACATGTTTTGTTGAAGAAGCTATGGTTTCGATCTGATTTGCCTGCACCTTATGTTTGAGCATGCGCTACCATGAACTAAGTACAGGTGTTGGACATCAGGTGTGTGTTATGGCCTTATGGCGTTAAAATTGTCAAAGCTTATGCATATAAAATATGTATATACACACAAAGTGTTGGATGGAGGCGCAAGGATACAATAATAAGCATGAAAATTGATGTGTGTTAGGCTATGTTGCTCCGACTCTCCAAAATATTACCATACTTGTGCTGGATTTTCCAAAAAATGCACTACTTTTGAAGAGTCGGCACACAATCGTCGACATTTTCAAAGAGTCCGAGCGACATTGCTGCTTAGCATCTTCTTGATACATAGGGTGAATGGCTTTTAGACTCATGTATAGTTAGTGTAACCTAAAAATAATTCTTTTGATGAGTCTATACTGAGTAGTCCAGAGTTTATTCTTGTTGAAATATCTATAACTTCAGTGCTTAAGCGCGCCTTTGAAAATCTTGTTATCAACCCTTGTTTACCCCTCTTTCTTTAGTTAATTCATTTCAATATACTAGCTATCTAATATCTTCTTATTATGCCTACGATTGATTAAGCAAAAAAAAAAAAATTGTTTCTTCACTTAGCCATTGATGTATGGCCTAATTGCTTCTTAAAACTCTCTAGTTCTATATTGTTACTGGTTTTCTACATGTGGAGGTTAGATTTTATGAATCTGCACAAAACTGTGATCGTAAAAGTTTTTGTATCCTAACATAGTGAATTGTTAAATCTACAAATTGTAAATTACTTTAACGTAACCAACCGTCTTATCACGTGCAATCTTATTGCTTTGTTTATGCTGCTACACAAACAATAGAAAATTTAATGTCGAGGCGTTCATGTCTAATGGCATTACATATTGTATCTTTAAAGTTAGGAATAAAAGTTCATACCTTTACATGTGTCTTCCTATTTGGTGTTTCAGAAATTTCCAAATAAATTTTCCTTGGTCAGTAACTCGTGCTTTGATGCCAAACTTTCAGAATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCCGTAAGTGAAAATGCCTTTGCTGGTGCGATTCCATGGTTGCTAGGCTACACATTTCTTTGATCGTCTAAATGTCGAACAGGCATCCTAACTTTTAGTTTTCAGGTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATAT</genome_strand>
        <mrna_strand>TCACAACAACAAACTCTGCTGCTTCTACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCC......................................................................................................GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341922" ref_strand="+" ref_description="SGN-E341922 [cTOF-9-D1]">
      <seq>ggattttagcacttttttgagttgttaggttgtaaatttatagtttgtaaatattgaaatggagtaggtggagctagaaatttaaaagttttcttttttatagctgtggtgtacttgccaacttgagtgctacctcccatcgacaacaggtacatgtagcttcgtgtattgtctttactaggatttgaacctgaaacctcgcgagtagtaggccacacacccttgggtacagctagaaaatgaagttaatggagtttgaatttgacaccgagtatataacttgttttatgagtacatggcttgatttacgaaatattggaagtgctccttggagaaggtccacgttgatgcattatgaagtagctctagcttcttcttcttcttctttttttcctttttcaaatatagctataatgaattatgacaagttgatgttgaatcaaatgatgtgcactaccctagctaagaataacttgtagcagctataacatcctactttatgaaagagcaagaaaagtttggactatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="37955" stop="36826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37655" g_stop="37126" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E341922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37655" e_stop="37126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTTAGCACTTTTTTGAGTTGTTAGGTTGTAAATTTATAGTTTGTAAATATTGAAATGGAGTAGGTGGAGCTAGAAATTTAAAAGTTTTCTTTTTTATAGCTGTGGTGTACTTGCCAACTTGAGTGCTACCTCCCATCGACAACAGGTACATGTAGCTTCGTGTATTGTCTTTACTAGGATTTGAACCTGAAACCTCGCGAGTAGTAGGCCACACACCCTTGGGTACAGCTAGAAAATGAAGTTAATGGAGTTTGAATTTGACACCGAGTATATAACTTGTTTTATGAGTACATGGCTTGATTTACGAAATATTGGAAGTGCTCCTTGGAGAAGGTCCACGTTGATGCATTATGAAGTAGCTCTAGCTTCTTCTTCTTCTTCTTTTTTTCCTTTTTCAAATATAGCTATAATGAATTATGACAAGTTGATGTTGAATCAAATGATGTGCACTACCCTAGCTAAGAATAACTTGTAGCAGCTATAACATCCTACTTTATGAAAGAGCAAGAAAAGTTTGGACTATGGA</genome_strand>
        <mrna_strand>GGATTTTAGCACTTTTTTGAGTTGTTAGGTTGTAAATTTATAGTTTGTAAATATTGAAATGGAGTAGGTGGAGCTAGAAATTTAAAAGTTTTCTTTTTTATAGCTGTGGTGTACTTGCCAACTTGAGTGCTACCTCCCATCGACAACAGGTACATGTAGCTTCGTGTATTGTCTTTACTAGGATTTGAACCTGAAACCTCGCGAGTAGTAGGCCACACACCCTTGGGTACAGCTAGAAAATGAAGTTAATGGAGTTTGAATTTGACACCGAGTATATAACTTGTTTTATGAGTACATGGCTTGATTTACGAAATATTGGAAGTGCTCCTTGGAGAAGGTCCACGTTGATGCATTATGAAGTAGCTCTAGCTTCTTCTTCTTCTTCTTTTTTTCCTTTTTCAAATATAGCTATAATGAATTATGACAAGTTGATGTTGAATCAAATGATGTGCACTACCCTAGCTAAGAATAACTTGTAGCAGCTATAACATCCTACTTTATGAAAGAGCAAGAAAAGTTTGGACTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724528" ref_strand="+" ref_description="SGN-E724528 [FC24BE07]">
      <seq>aatcggccgaattgcttgcacaattgaagtgttcttcaagccatcaaaaactcagtctctcttcattagcaaaagcactttgcgaaaaacttcgattcgtttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctattgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcactttacggtgcttgtgaggccatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactcaacatttcatatttgatgttatcgcatcgacttctctccaagattgttattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66522" stop="71773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66821" g_stop="66935" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="126" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="308" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="416" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="506" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="591" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="686" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71297" g_stop="71473" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="863" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E724528" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66821" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTTGCACAATTGAAGTGTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTA</genome_strand>
        <mrna_strand>TTGCTTGCACAATTGAAGTGTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTATTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718432" ref_strand="+" ref_description="SGN-E718432 [FC04CF04]">
      <seq>aatcggccgaattggcacaattgaagtgttcttcaagccatcaaaaactcagtctctcttcattagcaaaagcactttgcgaaaaacttcgattcgtttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctattgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcactttacggtgcttgtgaggccatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactcaacatttcatatttgatgttatcgcatcgacttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66525" stop="71757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66821" g_stop="66935" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="123" r_length="115" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="305" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="413" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="503" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="588" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="683" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71297" g_stop="71457" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="844" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E718432" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66821" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTTGCACAATTGAAGTGTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCT</genome_strand>
        <mrna_strand>GAATTGGCACAATTGAAGTGTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTATTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720495" ref_strand="+" ref_description="SGN-E720495 [FC10DH10]">
      <seq>gcttgcacaattgaagctgttcttcaagccatcaaaaactcagtctctcttcattagcaaaagcactttgcgaaaaacttcgattcgtttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacacctgcagacaatcgctattgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttaaagaaaatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggcccatacttgtgccaacctgtaattgctggattaggagaaaatgacaagccttttatttgcacaatggactctattgaagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcactttacggtgcttgtgaggccatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtaaaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactcaacatttcatatttgatgttatcgcatcgacttctctccaagattgttatttaatagattcagntgtctgtcactaatggatgttaacattctagttagtttacaatcctctatttgagcatcccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66524" stop="71847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66823" g_stop="66935" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="296" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="404" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="494" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="579" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="674" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71297" g_stop="71549" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="927" r_length="253" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E720495" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>926</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66823" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGCACAATTGAAG-TGTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGCATCCCAACG</genome_strand>
        <mrna_strand>GCTTGCACAATTGAAGCTGTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACACCTGCAGACAATCGCTATTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAAAGAAAATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGCCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAAATGACAAGCCTTTTATTTGCACAATGGACTCTATTGAAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAAACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGNTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGCATCCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281413" ref_strand="-" ref_description="SGN-E281413 [cLEL-1-E11](-)">
      <seq>gcacgagttcaagccatcaaaaactcagtctctcttcattagcaaaagcactttgcgaaaaactgcgattcgtttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66544" stop="68490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66835" g_stop="66935" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="281" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68190" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="380" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E281413" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281413" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66835" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTA</genome_strand>
        <mrna_strand>GCA-CG-AGTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTGCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717299" ref_strand="+" ref_description="SGN-E717299 [FB19DB11]">
      <seq>cgttcttcaagccatcaaaaactcagtctctcttcattagcaaaagcactttgcgaaaaacttcgattcgtttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctattgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcactttacggtgcttgtgaggccatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactncacatttcatatttgatgttatcgcatcgacttctctccaagattgttatttaatagattcagttgtctgtcactaatggatgttaacattctaggtagttttacatcctctatttgagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66540" stop="71841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66839" g_stop="66935" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="279" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="387" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="477" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="562" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="657" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71297" g_stop="71540" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="901" r_length="244" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="902" polyA_stop="918"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E717299" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66839" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGC</genome_strand>
        <mrna_strand>CGTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTATTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTNCACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGGTAGTTTTACATCCTCTATTTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712077" ref_strand="+" ref_description="SGN-E712077 [FB03DC10]">
      <seq>cgttcttcaagccatcaaaaactcagtctctcttcattagcaaaagcactttgcgaaaaacttcgattcgtttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctattgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcactttacggtgcttgtgaggccatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactccaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66540" stop="71726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66839" g_stop="66935" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="279" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="387" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="477" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="562" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="657" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71297" g_stop="71426" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="788" r_length="131" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E712077" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66839" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACT-CAACATT</genome_strand>
        <mrna_strand>CGTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTATTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCCAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702442" ref_strand="+" ref_description="SGN-E702442 [FA18CH10]">
      <seq>gttcttcaagccatcaaaaactcagtctctcttcattagcaaaagcactttgcgaaaaacttcgattcgtttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctattgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcactttacggtgcttgtgaggccatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactcaacatttcatatttgatgttatcgcatcgacttctctccaggattgttatttaatagattcagttgtctgtcactaatggatgttaacattctagttagtttacaatcctctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66540" stop="71835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66840" g_stop="66935" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="278" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="386" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="476" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="561" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="656" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71297" g_stop="71535" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="895" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E702442" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66840" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATT</genome_strand>
        <mrna_strand>GTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTATTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAGGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427675" ref_strand="-" ref_description="SGN-E427675 [STM-48-L18]">
      <seq>gttcttcaagacataaaaaactcagtctctcttcattagcaaaagcattctgcaaaaaacttcgattcgtttctctaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgagaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagtcttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccagcctgtaattgctggattaggagatgatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggtactgcatctgaatcactttacggtgcctgtgaggcgatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaaaggaaggatggactaaacacctgtggggtgccatacttgttcactatgcatttcgctgggatgacatttcacttgttttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66540" stop="71714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66840" g_stop="66935" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="277" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="385" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="475" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="560" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="655" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71297" g_stop="71414" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="772" r_length="117" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E427675" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427675" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66840" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGA</genome_strand>
        <mrna_strand>GTTCTTCAAGACATAAAAAACTCAGTCTCTCTTCATTAGCAAAAGCATTCTGCAAAAAACTTCGATTCGTTTCTCT-AAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGAGAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGTCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAGCCTGTAATTGCTGGATTAGGAGATGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGTACTGCATCTGAATCACTTTACGGTGCCTGTGAGGCGATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAAGGAAGGATGGACTAAACACCTGTGGGGTGCCATACTTGTTCACTA-TGCATTTCGCTGGGATGACATTTCACTTGTTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487909" ref_strand="+" ref_description="SGN-E487909 [cSTE-26-N22]">
      <seq>gttcttcaagacataaaaaactcagtctctcttcattagcaaaagcattctgcaaaaaacttcgattcgtttctctaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgagaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagtcttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccagcctgtaattgctggattaggagatgatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggtactgcatctgaatcactttacggtgcctgtgaggcgatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66540" stop="70856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66840" g_stop="66935" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="277" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="385" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="475" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="560" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="655" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E487909" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66840" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT</genome_strand>
        <mrna_strand>GTTCTTCAAGACATAAAAAACTCAGTCTCTCTTCATTAGCAAAAGCATTCTGCAAAAAACTTCGATTCGTTTCTCT-AAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGAGAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGTCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAGCCTGTAATTGCTGGATTAGGAGATGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGTACTGCATCTGAATCACTTTACGGTGCCTGTGAGGCGATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427674" ref_strand="+" ref_description="SGN-E427674 [STM-48-L18]">
      <seq>gttcttcaagacataaaaaactcagtctctcttcattagcaaaagcattctgcaaaaaacttcgattcgtttctctaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgagaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagtcttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccagcctgtaattgctggattangagatgatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggtactgcatctgaatcactttacngtgcctgtgaggcgatgtacaagcccgacatgggaccggaaagattgtttgagaacatctctcaggcactgntgtcatctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66540" stop="70796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66840" g_stop="66935" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="277" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="385" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="475" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="560" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70496" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="610" r_length="50" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E427674" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66840" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGT</genome_strand>
        <mrna_strand>GTTCTTCAAGACATAAAAAACTCAGTCTCTCTTCATTAGCAAAAGCATTCTGCAAAAAACTTCGATTCGTTTCTCT-AAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGAGAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGTCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAGCCTGTAATTGCTGGATTANGAGATGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGTACTGCATCTGAATCACTTTACNGTGCCTGTGAGGCGATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAAGATTGTTTGAGAACATCTCTCAGGCACTGNTGTCATCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315453" ref_strand="+" ref_description="SGN-E315453 [cTOA-22-F17]">
      <seq>ttcttcaagccatcaaaaactcagtctctcttcattagcaaaagcactttgcgaaaaacttcgattcgtttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattangagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66541" stop="69729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66841" g_stop="66935" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="277" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="385" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="475" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69429" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="526" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E315453" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66841" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTA</genome_strand>
        <mrna_strand>TTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTANGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341584" ref_strand="+" ref_description="SGN-E341584 [cTOE-23-J14]">
      <seq>ttcttcaagccattaaaaactcagtctctcttcattagcaaaagcactttgcgaaaaacttcgattcgtttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66541" stop="69729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66841" g_stop="66935" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="277" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="385" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="475" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69429" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="526" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E341584" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66841" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTA</genome_strand>
        <mrna_strand>TTCTTCAAGCCATTAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303352" ref_strand="+" ref_description="SGN-E303352 [cLEX-2-K4]">
      <seq>tcttcaagccatcaaaaactcagtctctcttcattagcaaaagcactttgcgaaaaacttcgattcgtttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcactttacggtgcttgtgaggccatgtacaagcccgacatgggaccggaagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66542" stop="69764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66842" g_stop="66935" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="276" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="384" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="474" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="559" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E303352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66842" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG</genome_strand>
        <mrna_strand>TCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454757" ref_strand="+" ref_description="SGN-E454757 [cSTS-24-C24]">
      <seq>cttcaagacatcaaaaactcagtctctcttcattagcaaaagcattctgcaaaaaacttcgattcgtttctctaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgagaagctttttattggactttctggcttggctactgatactcaaacactgcagcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagtcttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccagcctgtaattgctggattaggagatgatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggtactgcatctgaatcactttacggtgcctgtgaggcgatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcangcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactaaacacctgtggggtgccatacttgttcactattgcatttcactgggatgacatttcacttgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66543" stop="71710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66843" g_stop="66935" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="274" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="382" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="472" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="557" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="652" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71297" g_stop="71410" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="766" r_length="114" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E454757" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66843" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTG</genome_strand>
        <mrna_strand>CTTCAAGACATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCATTCTGCAAAAAACTTCGATTCGTTTCTCT-AAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGAGAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGTCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAGCCTGTAATTGCTGGATTAGGAGATGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGTACTGCATCTGAATCACTTTACGGTGCCTGTGAGGCGATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCANGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTAAACACCTGTGGGGTGCCATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746231" ref_strand="+" ref_description="SGN-E746231 [GI|47104823]">
      <seq>ttcaagccatcaaaaactcagtctctcttcattagcaaaagcactttgcgaaaaacttcgattcgttttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcactttacggtgcttgtgaggccatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactcaacatttcatatttgatgttatcgcatcgacttctctccaagattgttatttaatagattcagttgtctgtcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66544" stop="71797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66844" g_stop="66935" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="275" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="383" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="473" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="558" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="653" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71297" g_stop="71489" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="846" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="850" polyA_stop="869"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E746231" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66844" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCG-TTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCT</genome_strand>
        <mrna_strand>TTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297225" ref_strand="+" ref_description="SGN-E297225 [cLET-29-N22]">
      <seq>tcaagccatcaaaaactcagtctctcttcattagcaaaagcactttgcgaaaaacttcgattcgttttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66545" stop="68430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66845" g_stop="66935" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="274" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68130" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="313" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E297225" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66845" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCG-TTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCT</genome_strand>
        <mrna_strand>TCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567060" ref_strand="+" ref_description="SGN-E567060 [11126]">
      <seq>agacatcaaaaactcagtctctcttcattagcaaaagcattctgcaaaaaacttcgattcgtttctctaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgagaagctttttattggactttctggcttggctactgatactcaaacactgcagcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagtcttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccagcctgtaattgctggattaggacgatgatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggtactgcatctgaatcactttacggtgcctgtgaggcgatgtacaagcccgacatgggaccgcgaagaaattgtttgagaccatctctcaagcactggttgtcatctgtagaccgtgaactgtttaagtggttggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66548" stop="70823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66848" g_stop="66935" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="269" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="377" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="468" r_length="91" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="553" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70524" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="635" r_length="82" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E567060" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66848" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGA-GAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCG-GAAG-AATTGTTTGAGACCATCTCTCAGGCACT-GTTGTCATCTGTAGACCGTG-ACTGTTTAAGTGGTTGGGGA</genome_strand>
        <mrna_strand>AGACATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCATTCTGCAAAAAACTTCGATTCGTTTCTCT-AAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGAGAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGTCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAGCCTGTAATTGCTGGATTAGGACGATGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGTACTGCATCTGAATCACTTTACGGTGCCTGTGAGGCGATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGCGAAGAAATTGTTTGAGACCATCTCTCAAGCACTGGTTGTCATCTGTAGACCGTGAACTGTTTAAGTGGTTGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462808" ref_strand="+" ref_description="SGN-E462808 [cPRO-12-D12]">
      <seq>agacatcaaaaactcagtctctcttcattagcaaaagcattctgcaaaaaacttcgattcgtttctctaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgagaagctttttattggactttctggcttggctactgatactcaaacactgcagcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagtcttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccagcctgtaattgctggattaggagatgatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggtactgcatctgaatcactttacggtgcctgtgaggcgatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66548" stop="70796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66848" g_stop="66935" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="269" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="377" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="467" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="552" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70496" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="602" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E462808" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66848" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGT</genome_strand>
        <mrna_strand>AGACATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCATTCTGCAAAAAACTTCGATTCGTTTCTCT-AAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGAGAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGTCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAGCCTGTAATTGCTGGATTAGGAGATGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGTACTGCATCTGAATCACTTTACGGTGCCTGTGAGGCGATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433506" ref_strand="+" ref_description="SGN-E433506 [STM-58-H13]">
      <seq>cgggccccccctcgagactagtacaatccttcagacataaaaaactcagtctctcttcattagcaaaagcattctgcaaaaaacttcgattcgtttctctaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgagaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagtcttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccagcctgtaattgctggattaggagatgatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggtactgcatctgaatcactttacggtgcctgtgaggcgatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66541" stop="70862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66850" g_stop="66935" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="119" r_length="85" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="301" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="409" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="499" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="584" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="679" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E433506" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66850" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT</genome_strand>
        <mrna_strand>ACATAAAAAACTCAGTCTCTCTTCATTAGCAAAAGCATTCTGCAAAAAACTTCGATTCGTTTCTCT-AAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGAGAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGTCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAGCCTGTAATTGCTGGATTAGGAGATGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGTACTGCATCTGAATCACTTTACGGTGCCTGTGAGGCGATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316924" ref_strand="+" ref_description="SGN-E316924 [cTOA-27-H5]">
      <seq>ccatcaaaaactcagtctctcttcattagcaaaagcactttgcgaaaaacttcgattcgtttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattangagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcactttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66550" stop="69730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66850" g_stop="66935" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="268" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="376" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="466" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69430" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="518" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E316924" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66850" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTAC</genome_strand>
        <mrna_strand>CCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTANGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479850" ref_strand="+" ref_description="SGN-E479850 [cSTD-11-J5]">
      <seq>tcaaaaactcagtctctcttcattagcaaaagcattctgcaaaaaacttcgattcgtttctctaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgagaagctttttattggactttctggcttggctactgatactcaaacactgcagcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagtcttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccagcctgtaattgctggattaggagatgatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagatattgttgtttctggtactgcatctgaatcactttacggtgcctgtgaggcgatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcangcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66553" stop="70831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66853" g_stop="66935" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="264" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="372" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="462" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="547" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70531" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="632" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E479850" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66853" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATG</genome_strand>
        <mrna_strand>TCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCATTCTGCAAAAAACTTCGATTCGTTTCTCT-AAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGAGAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGTCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAGCCTGTAATTGCTGGATTAGGAGATGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATATTGTTGTTTCTGGTACTGCATCTGAATCACTTTACGGTGCCTGTGAGGCGATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCANGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703277" ref_strand="+" ref_description="SGN-E703277 [FA21AC04]">
      <seq>caaaaactcagtctctcttcattagcaaaagcactttgcgaaaaacttcgattcgtttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctattgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcactttacggtgcttgtgaggccatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactcaacatttcatattttgatgttatcgcatcgacttctctccaagattgttattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66554" stop="71773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66854" g_stop="66935" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="264" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="372" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="462" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="547" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="642" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71297" g_stop="71473" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="820" r_length="178" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E703277" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66854" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATA-TTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTA</genome_strand>
        <mrna_strand>CAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTATTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542530" ref_strand="+" ref_description="SGN-E542530 [TUS-63-O4]">
      <seq>caaaaactcagtctctcttcattagcaaaagcactttgcgaaaaacttcgattcgtttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcacaaagattttgttgtttctggcactgcatctgaatcactttacggagcttgtgagggcatgtacaagcccgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66554" stop="69760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66854" g_stop="66935" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="264" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="372" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="462" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69460" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="545" r_length="83" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E542530" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66854" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCA-AAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGAC</genome_strand>
        <mrna_strand>CAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCACAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGAGCTTGTGAGGGCATGTACAAGCCCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344478" ref_strand="+" ref_description="SGN-E344478 [cTOF-14-F3]">
      <seq>aaaaactcagtctctcttcattagcaaaagcactttgcgaaaaacttcgattcgtttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcactttacggtgcttgtgaggccatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66555" stop="70856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66855" g_stop="66935" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="263" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="371" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="461" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="546" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="641" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E344478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66855" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT</genome_strand>
        <mrna_strand>AAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299533" ref_strand="+" ref_description="SGN-E299533 [cLEW-20-O3]">
      <seq>aaaaactcagtctctcttcattagcaaaagcactttgcgaaaaacttcgattcgtttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66555" stop="69729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66855" g_stop="66935" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="263" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="371" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="461" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69429" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="512" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E299533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66855" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTA</genome_strand>
        <mrna_strand>AAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220941" ref_strand="-" ref_description="SGN-E220941 [cLEL-22-D22](-)">
      <seq>aaaaactcagtctctctttattagcaaaagcactttgcgaaaaacttcgattcgtttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66555" stop="68485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66855" g_stop="66935" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="263" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68185" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="357" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E220941" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220941" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66855" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATG</genome_strand>
        <mrna_strand>AAAAACTCAGTCTCTCTTTATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328546" ref_strand="+" ref_description="SGN-E328546 [cTOC-23-K6]">
      <seq>ctcagtctctcttcattagcaaaagcactttgcgaaaaacttcgattcgtttctctaaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcactttacggtgcttgtgaggccatgtacaagcccgacatgggaccggaaagattgtttgagaccatctctcangcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66560" stop="70856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66860" g_stop="66935" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="258" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="366" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="456" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="541" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="636" r_length="95" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E328546" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66860" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT</genome_strand>
        <mrna_strand>CTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAAGATTGTTTGAGACCATCTCTCANGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573142" ref_strand="+" ref_description="SGN-E573142 [32405]">
      <seq>caaaagcattctgcaaaaaacttcgattcgtttctctaaatcactctccaatgtcgatctttgagtataatggaagtgctttggttgcgatggttgggaaaaactgtttcgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgagaagctttttattggactttctggcttggctactgatactcaaacactgcagcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagtcttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccagcctgtaattgctggattaggagatgatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggtactgcatctgaatcactttacggtgcctgtgaggcgatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66579" stop="70854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66879" g_stop="66935" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67096" g_stop="67277" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="238" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="346" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="436" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="521" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="616" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E573142" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66879" e_stop="66935"/>
          <exon e_start="67096" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCGGTAAGTTCTTCTTCTTCTTCCTTCGTTCTATGAACTGCACAATTTTTTTTTTCCTTTTTATGCTTAGTACAGTTATAAAACCTAGTTGTTTTCGTAGATCGAATTTGATATCTGATAAAATAGTGTATTTTTTTCAATTTTTGGTGAATTTTTTGAACAGATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT</genome_strand>
        <mrna_strand>CAAAAGCATTCTGCAAAAAACTTCGATTCGTTTCTCT-AAATCACTCTCCAATGTCG................................................................................................................................................................ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGAGAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGTCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAGCCTGTAATTGCTGGATTAGGAGATGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGTACTGCATCTGAATCACTTTACGGTGCCTGTGAGGCGATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542527" ref_strand="+" ref_description="SGN-E542527 [TUS-63-O4](-)">
      <seq>cgctattgcgagtgataggcgttttggagtacagctgcagacaatcgctactgatttccagaggatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcactttacggtgcttgtgaggccatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactcaacatttcatatttgatgttatcgcatcgacttctctccaagattgttatttaatagattcagttgtctgtcactaatggatgttaacattctagttaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66849" stop="71818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67149" g_stop="67277" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="237" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="327" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="412" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="507" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71297" g_stop="71518" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="729" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="730" polyA_stop="747"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E542527" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67149" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTA</genome_strand>
        <mrna_strand>CGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697289" ref_strand="+" ref_description="SGN-E697289 [FA02AD12]">
      <seq>ccggttgatttataaaatacatgacaagctttttattggactttctggcttggctactgatactcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcactttacggtgcttgtgaggccatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactcaacatttcatatttgatgttatcgcatcgacttctctcccnnnaagaaaaaaacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="66906" stop="71759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67206" g_stop="67277" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="180" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="270" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="355" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="450" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71297" g_stop="71462" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="616" r_length="166" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E697289" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67206" e_stop="67277"/>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACTGTAATGTCTAATTTTGTTTTAATTCTGTTTCTACTGATTTTTGCTGGCTAAAGATTACTACTAGCATGTAAGGGTGTGAGTTAGTAGTCAATGAAGTGGAGGGAGAAACATGAGGTTTCAGGTTTGAATCCTAGCAGAAATAAATACTAGGTCATTTCTTCCCATATGCCCTAGGTTTTGGTGGTCAGAGTTATTAGTACCTGTTGTGGGTGGGAGGTGGAAGGTATCATTTGGAATTAGTTGAGGTGCGCCCAAGCTGGTTTGGAAACCACAATTGTAAATAAATAAAAGTAAGATAGGACACAAGAAAGAAAAAGATCAATTTAGGTGATATGTGCAGGCTATAGACTTATTACAGAACTTCTAATATTATTATTTTTTATCTTTATTGTGTATACTTAACTTATTTGGCACTGAGGTGTTGTAGTTGTAGTTATTATTAGTACTGTTTTTGCTCCCTCCCCATTGTGTTGGGTGCTTTAAGCCTTTTTTTTGTGAACTACCATCATTTATTAAAGGACCTATTTCTTTATTTTTGAGAGATTTATAGGACATTAATTAGAGAAGTATATTGGAGTAGAAATTTAATATTTTGAGTGGGAGTTAGTGATTACTGACAAAGAGGAAGGCTTCCTGTGGGTTGGGTGTGTGGAGAGTGGACAATAGAGGGTGAAACTGGTGTTTTACTTATTTATTGCTGATGCATTCTTATTGATTGTGGAATGGGGAGGGGGTATATTACAATCTGCTTATTAGTAGTTTGATTTGTTTGGATTATGCACCCTGATATGTGCTTTTGTAATGGTTTCTTCAGGCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAG</genome_strand>
        <mrna_strand>CCGGTTGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCCNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353462" ref_strand="+" ref_description="SGN-E353462 [cTOS-15-E11]">
      <seq>tcaaacactgcatcaacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcactttacggtgcttgtgaggccatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactcaacatttcatatttgatggtatcgcatcgacttctctccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="67792" stop="71763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68092" g_stop="68199" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="117" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="207" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="292" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="387" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71297" g_stop="71467" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="558" r_length="171" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E353462" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68092" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGT</genome_strand>
        <mrna_strand>GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGGTATCGCATCGACTTCTCTCCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353683" ref_strand="+" ref_description="SGN-E353683 [cTOS-10-B16]">
      <seq>aacgcctcatgttccgtcacaagctatatgagcttagagaagatagggatatgaagcccgagacctttgccagccttgtatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcactttacggtgcttgtgaggccatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactcaacatttcatatttgatgttatcgcatcgacttctctccaagattgttatttaatagattcagttgtctgtcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="67797" stop="71797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68097" g_stop="68199" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="193" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="278" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="373" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71297" g_stop="71498" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="575" r_length="202" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E353683" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68097" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAAT</genome_strand>
        <mrna_strand>AACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711561" ref_strand="+" ref_description="SGN-E711561 [FB02BD04]">
      <seq>ccgataatagggatatgaagcccgagacctttgccagccttgcatctgctatgctttatgagaaaaggtttggtccatacttgtgccaacctgtaattgctggattaggagaagatgacaagccttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggcactgcatctgaatcactttacggtgcttgtgaggccatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgttttagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactcaacatttcatatttgatgttatcgcatcgacttctctccaagattgttatttaatagattcagttgtctgtcnnaaaaaaaaaaaaaaaaaaaaaaaaactttcgggggggggcccggcccccattccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="67835" stop="84136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68133" g_stop="68199" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69164" g_stop="69253" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="157" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="242" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="337" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71297" g_stop="71507" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="548" r_length="211" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71508" i_stop="71703" i_length="196">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.820" a_score="0.48"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71704" g_stop="71747" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="592" r_length="44" r_score="0.477"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E711561" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68133" e_stop="68199"/>
          <exon e_start="69164" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71507"/>
          <exon e_start="71704" e_stop="71747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAGGTTGGTAACTAGCATATGTTCTTTGACGTGTGTTAACGTATAGTTACTGAAGATTACATGGTGTCAGAGTCATAATTGCATGTTCTTGAATATGAATAGCATTTTTGGAGATTTGATGAGAGTTGTTAATTGAGTAGTAAGTGGTTAAATGGCTGCCTTTAGAGTCAATAGGACTTTCAAGAACTTTACTGTACTTTCGTAAGATAGGTGAGGTGTGTGCAAGCAGGCCCATATATTTTTGAAAAAGAGAAGCTAATGTTTGGTGGCTTGTTCCACAAGTATTTTTGAGCCCAATAGTTCAAACCCTTTAGTTTCAAGCTCAAACTAGCTATTGATCCGTTGGATCTTAGATTTAAGTTGACTTTAACTGATGAGTGGGCTGAGACATCATTTTCCATTTAATAGACTAGATCTGAGGTTTCATTTATTAGATTCGAAGAGAGGAGAATAGAGAGAAAAGAGATATGAAGAATGAGTAAAGAAAAATCAGATCTTAGAAAGGACTCTTTAGTGTGAAAATATTTTCTATATTGTATCCAAAGGTTACTCAAGATAGGACGATGTGCTCAGTTATTAATTTAGGTAGAAATCACATCTGATGAGATGTTCTTACTTTTTAAAAAAATTTGTAATTCCACTACTTGCAATACCCCCCCCCCCCTCCCCCAAGCCTCCATAATGCAGACATATTTTAAACATTATACATTGATTTTAGAGGTATGATCCATATGAAGTGGTTAATTAACTTTCTCTTCGAACATCTCCTGTTCGTATTTGAGCTAAAAATTTAATCAAGCTTAACCTTAGCATTTGGGCTTAATGAACTAACAAAAAATGCTCACTCCAAATAGCTGTTTAGCTGGACAAAACCTGTTAAATCCAGTCTGGGTTGTTGTTTTGTCTATCCATGAACAGTGGTTCATCAACTTGTTAATAACTTCATTATTCATTTGGTTTTGTCTAGGTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGCATCCCAACGAATTTCTGCTGCCATCACACACTAGACAAATTATACAGAAGATGAATCAATTTCTTTGGGGGGACTCCTTGTGGAATTGCAATATTGTAGGAAAGATAAATGTTGGAACTGATATTATTATACAATCTTTAATTTCCTCTGCATTCTTCCCAAGGCAGAAGAACGCCCAGTTGGGGAAGGTCTTGTACGCACTCTACC</genome_strand>
        <mrna_strand>CCGATAATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGCATCTGCTATGCTTTATGAGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTTAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCNNAAAAAAAAAAAAA....................................................................................................................................................................................................AAAAAAAAAAAACTTTCGGGGGGGGGCCCGGCCCCCATTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591553" ref_strand="+" ref_description="SGN-E591553 [45268]">
      <seq>cttttatttgcacaatggactctattggagcaaaggagctcgcaaaagattttgttgtttctggtactgcatctgaatcactttacggtgcctgtgaggcgatgtacaagcccgacatgggaccagaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaaaggaaggatggactaaacacctgtggggtgccatacttgttcactattgcatttcgctgggatgacatttcacttgttttgatgaatactcaacatttcatatttgatgttatcgtatcaacttctctccaagattgttatttaatagattcagttgtctgtcagtaatgaatgttaacattctagttagtttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="68920" stop="71823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69220" g_stop="69253" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69379" g_stop="69463" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="119" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="214" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71297" g_stop="71524" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="442" r_length="228" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E591553" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69220" e_stop="69253"/>
          <exon e_start="69379" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTATTTGCACAATGGACTCTATTGGAGCAAAGTATGTTGAGTTTCTTTCTACTGCTTCAAGTTCTAGAATTTGGAGACTTGTGTACTCTGTCAGGGTCCCCATGGCATTGCATGCTTATCAATTGCTACTTATTAGATGTTATGCGTGTTGTGCAGGGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTAC</genome_strand>
        <mrna_strand>CTTTTATTTGCACAATGGACTCTATTGGAGCAAA.............................................................................................................................GGAGCTCGCAAAAGATTTTGTTGTTTCTGGTACTGCATCTGAATCACTTTACGGTGCCTGTGAGGCGATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCAGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAAGGAAGGATGGACTAAACACCTGTGGGGTGCCATACTTGTTCACTATTGCATTTCGCTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGTATCAACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCAGTAATGAATGTTAACATTCTAGTTAGTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224217" ref_strand="+" ref_description="SGN-E224217 [cLEL-19-F9](-)">
      <seq>ctcgcaaaagattttgttgtttctggcactgcatctaaatcactttacggtgcttgtgaggccatgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactcaacatttcatatttgatgttatcgcatcgacttctctccaagattgttatttaatagattcagttgtctgtcactaatggatgttaacattctagttagtttacaatcctctatttgagcatcccaaaaaaataataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="69083" stop="71853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69383" g_stop="69463" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="176" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71297" g_stop="71547" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="427" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="437" polyA_stop="446"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E224217" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69383" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGCATCCCAA</genome_strand>
        <mrna_strand>CTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTAAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGCATCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224067" ref_strand="+" ref_description="SGN-E224067 [cLEL-19-F9](-)">
      <seq>catgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactcaacatttcatatttgatgttatcgcatcgacttctctccaagattgttatttaatagattcagttgtctgcccctaatggatgttaacattctagttagtttacaatcctctatttgagcatcccacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="69145" stop="71851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69445" g_stop="69463" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="114" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71297" g_stop="71546" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="364" r_length="250" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="384"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E224067" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69445" e_stop="69463"/>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTACAAGCCCGACATGGTTTGTACTGTTCTTGCTTTATTTTTTGCCATATAATTAGATAATCTGTCTCTAGCTTGAATGCCATGTATTGCACGTCCATGTTTTTGTTATGTACTGAAAATAATCATCCTAGAGTTGCTGAGATGCTTTTATTTGATGCTTTGGAGTCTGATAGTTACTGTTCTCTGTTTTGATTTATTAAAACTGGTAGATTTGACAAATTTATTTTCTTTAAGCAGACACTGCTTGATGGGTGAAAAATCTGACATTAGTAATGCTCTCTGGGGGGGGGGGGTGGCGGAGTGCGATAACAATAGATAATATGAAGGAAGAGGAGGGTGGTGGTGGTGAATTAATATTGTTTGTGCAAGGAAAACTTGAACACGTCAGATCTCATTATATTGCCGGTTCACAACACAATTGTGGATGCTGCACTTTTTTAGTTGATCTGAAATGATGATACTGAGTAGAGCATAGAGATTATCATCTCCTAAGAACATAGGATTGGCTAGGAGAACATGGCAGCATGGGAAGTATACCACCATGTATTTTTTGAACTATCCATAACGAGAGTAGAATATTAAGCCATAATAATGTAAATATGTATTTTAAAATATTTCTATGACATTCTTTTTTGTAGACAGAGGATACCATTGTGTGCAAAATAATTGGGATAGCCAGATGTGCTATGGGTGGTTACGTCATTTGAGTCACTCGCTTTGAAAATTATTTCTGACACCATCTTTGTGTGATATCACCGAAATGATTTTTGACCAATAAACAAAATGAATAAGATGAGTATGACATGTATTTAAGTTTCCATCGAGGTTCATAACCTTCCATTCCAGACATTTTTGAAATTGAATTTCCATTCCAATATTGCTGGTGCATGCTTCAGAATTTTTCTCTGCTACTTCTTTGCAATGCTTCTGTTGTTTGTCGTGCATTTATTTCTTATTTTTATTGGCTTTATGGTTTCTTATTGTATGCTAACATTTCAGGGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGCATCCCA</genome_strand>
        <mrna_strand>CATGTACAAGCCCGACATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGCCCCTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGCATCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242390" ref_strand="-" ref_description="SGN-E242390 [cLED-30-G1]">
      <seq>tgtacaagcccgacatgggaccggaagaattgtttgagaccatctctcaggcactgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactcaacatttcatatttgatgttatcgcatggacttctctccaagattgttatttaatagattcagttgtctgtcactaatggatgttaacattctagttagtttacaatcctctatttgagcatcccaacgaatttctgctgccatcacacactagacaaattatacagaagatgaatcaatttctttggggggactccttgtggaattgcaatattgtaggaaagataaatgttggaactgatattattatacaatctttaatttcctctgaaaaaaaaaaaaaaaaaacgcgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="70144" stop="71992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70447" g_stop="70541" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="112" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71297" g_stop="71689" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="505" r_length="393" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="525"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E242390" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242390" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70447" e_stop="70541"/>
          <exon e_start="71297" e_stop="71689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGCATCCCAACGAATTTCTGCTGCCATCACACACTAGACAAATTATACAGAAGATGAATCAATTTCTTTGGGGGGACTCCTTGTGGAATTGCAATATTGTAGGAAAGATAAATGTTGGAACTGATATTATTATACAATCTTTAATTTCCTCT</genome_strand>
        <mrna_strand>GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATGGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGCATCCCAACGAATTTCTGCTGCCATCACACACTAGACAAATTATACAGAAGATGAATCAATTTCTTTGGGGGGACTCCTTGTGGAATTGCAATATTGTAGGAAAGATAAATGTTGGAACTGATATTATTATACAATCTTTAATTTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224182" ref_strand="+" ref_description="SGN-E224182 [cLEL-19-O24](-)">
      <seq>atctctcaggcactgatgtcatctgtaaaccgtgactgtttaagtggttgggaaggacatgtttatgttgtgacaccaactgaagtgacagagaaggatcttgaaggaaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactcaacatttcatatttgatgttatcgcatcgacttctctccaagaatgttatttaatagattcagttgtctgtcactaatggatgttaacattctagttagtttacaatcctctatttgagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="70171" stop="71841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70471" g_stop="70541" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71297" g_stop="71540" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="316" r_length="245" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="317" polyA_stop="333"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E224182" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70471" e_stop="70541"/>
          <exon e_start="71297" e_stop="71540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAG-AGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGC</genome_strand>
        <mrna_strand>ATCTCTCAGGCACTGATGTCATCTGTAAACCGTGACTGTTTAAGTGGTTGGGAAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAAGGATCTTGAAGGAAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGAATGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244701" ref_strand="-" ref_description="SGN-E244701 [cLED-38-I24]">
      <seq>tgttgtcatctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatctttaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactcaacatttcatatttgatgttatcgcatcgacttctctccaagattgttatttaatagattcagttgtctgtcactaatggatgttaacattctagttagtttacaatcctctatttgagcatcccaacgaatttctgctgccatcacacactagacaaattatacagaagatgaatcaatttctttggggggactccttgtggaattgcaatattgtaggaaagataaatgttggaactgatattattatacaatctttaatttcctctgaaaaaaaaaaaaaaaaaacgcgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="70184" stop="71992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70484" g_stop="70541" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71297" g_stop="71689" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="451" r_length="393" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="453" polyA_stop="471"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E244701" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244701" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70484" e_stop="70541"/>
          <exon e_start="71297" e_stop="71689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGCATCCCAACGAATTTCTGCTGCCATCACACACTAGACAAATTATACAGAAGATGAATCAATTTCTTTGGGGGGACTCCTTGTGGAATTGCAATATTGTAGGAAAGATAAATGTTGGAACTGATATTATTATACAATCTTTAATTTCCTCT</genome_strand>
        <mrna_strand>TGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTTAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGCATCCCAACGAATTTCTGCTGCCATCACACACTAGACAAATTATACAGAAGATGAATCAATTTCTTTGGGGGGACTCCTTGTGGAATTGCAATATTGTAGGAAAGATAAATGTTGGAACTGATATTATTATACAATCTTTAATTTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242955" ref_strand="-" ref_description="SGN-E242955 [cLED-31-B4]">
      <seq>catctgtagaccgtgactgtttaagtggttggggaggacatgtttatgttgtgacaccaactgaagtgacagagaggatcttgaagggaaggatggactgaacacttgtggggtgctatacttgttcactattgcatttcactgggatgacatttcacttgttttgatgaatactcaacatttcatatttgatgttatcgcatcgacttctctccaagattgttatttaatagattcagttgtctgtcactaatggatgttaacattctagttagtttacaatcctctatttgagcatcccaacgaatttctgctgccatcacacactagacaaattatacagaagatgaatcaatttctttggggggactccttgtggaattgcaatattgtaggaaagataaatgttggaactgatattattatacaatctttaatttcctctgaaaaaaaaaaaaaaaaaacgcgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="70190" stop="71992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70490" g_stop="70541" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755">
            <donor d_prob="0.764" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71297" g_stop="71689" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="445" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="447" polyA_stop="465"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E242955" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242955" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70490" e_stop="70541"/>
          <exon e_start="71297" e_stop="71689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGTGTAAGTATTTAGATGCTTTCATATACCTATTTTATTGATCATCTATTTTTAGTAAGTGTCTACCAGAGTCTCTAATTGAAACAAATTATCCATCATCTATTATGTTCAAGATGGTGGTCTTTAAGGCAACAACAAACGGTGTGTGCCCAACATGTTTAGAGGGTTAGTTAATTCTAGAAAAGCGCTCTCCTAGAAGAGAAATTAGGAGTGTGCAGAGAAGATATGGCATTGTTAGGTATGGGAAGTGGTTGAGTTGGATTTGTGAAGGATCGGGTTTCCAATGTTGGAGATATGGTTCTTGCTTGGGGCTTGGGGAACGAGGGGAACTGGGTTTAGGAAAATGATAAGTCTTTAAGGCCTTGGCAGATTGAAGAGGCTTTACAAACTATGTTTCTCGGATCCTCCAGAAATACCGTTGAACTTGTCTTATACCCTCCAAAGATGAATAACTTTTGGAGGATTTGTCGGTCTAGGCGGCATTTTTAAGGATCTGAACAAAATTGCTGGTAGAAGGGGTGGTTGGTTGGAGAAAATGGTTACATGTCGTAGTTAATGAATGTTGAGATTCTCCACAACCTCCAACTACATGTTGCTGGTTGGAGTTTTCTGTTTCCTTTTTCATTTATTGATCCTTGGTGGGGGTGGGATGGGGATCATGACATATTTAATGAAATCATATTGGTTTTAAAGTGTTTGTGTTTTATGTTTTTGGGTACTCCAATCTTATTTGTTCCAATCCATGTATGTGGCTGCAGGACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGCATCCCAACGAATTTCTGCTGCCATCACACACTAGACAAATTATACAGAAGATGAATCAATTTCTTTGGGGGGACTCCTTGTGGAATTGCAATATTGTAGGAAAGATAAATGTTGGAACTGATATTATTATACAATCTTTAATTTCCTCT</genome_strand>
        <mrna_strand>CATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGCATCCCAACGAATTTCTGCTGCCATCACACACTAGACAAATTATACAGAAGATGAATCAATTTCTTTGGGGGGACTCCTTGTGGAATTGCAATATTGTAGGAAAGATAAATGTTGGAACTGATATTATTATACAATCTTTAATTTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424800" ref_strand="+" ref_description="SGN-E424800 [STM-44-I13]">
      <seq>acttttttttgtaaagataaacaggttgttactattaaatagaagaattacaacacaggaccccaaagaaaaaaacctggggcataccttcagttttgatcccaggacgaaacccaatgaggggaaaaaatgagctcatgttgatttaagttgaaggagcaatatcaaaggaatgaagaatctgttccaacgtatttcttctatccggatcaataggactttctaacccatcagagtgagcaatgtttaacagatatagcttgccagatgccacaaatgcagcagaaagtatcctcttcaaccctccccttgtgctatcaaccttgtactcaaactcatatacttgaagaactccttcatccgctctctccgatactgaaaccacttcagcctcctttggactttccttggggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="71763" stop="72762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72066" g_stop="72466" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="412" r_length="401" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72467" i_stop="72590" i_length="124">
            <donor d_prob="0.836" d_score="0.88"/>
            <acceptor a_prob="0.862" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72591" g_stop="72595" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="417" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E424800" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72066" e_stop="72466"/>
          <exon e_start="72591" e_stop="72595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGATAAACAGGTTAGTACTATTAAGTAGAAGAATTACAACACATCACCCCAAAGAAAAAAACCTGGGGCATATCTTTGGTTTTGATCCCAGTATGAAGCTCAATGAAGGGGAAAAAAGAGCTCATGTCGATTTAAGTTGAAGGAGCAATATCAAAGGAATGAAGAATCTGTTCCAACGTATTTCTTCTATCAGGATCAATAGGACCTTCTGACCCATCAGAGTGAGCGATGTTTAACAGATAGAGCTTGCCAGACGCAACAAATGCAGCAGAAAGTATCCTCTTCAACCCTCCCCTCGTGCTATCGACCTTGTATTCAAACTCATATACTTGAAGACCTCCTTCACCCGTTCTCTCCGATACTGAAACCACTTCAGCCTCCTTTGTACTTTCCTAAAAGTAAAAAAAGACATAGTACTATTAGTTGCCAATAATCCTTAGAAGCAAAAAAATTTCAGTGGGATCTACGGTCTTTCAACATCGTTTTATAAAGTCCAAATTTGAAAATCTCACTTGCTGATAGGATTG</genome_strand>
        <mrna_strand>TAAAGATAAACAGGTTGTTACTATTAAATAGAAGAATTACAACACAGGACCCCAAAGAAAAAAACCTGGGGCATACCTTCAGTTTTGATCCCAGGACGAAACCCAATGAGGGGAAAAAATGAGCTCATGTTGATTTAAGTTGAAGGAGCAATATCAAAGGAATGAAGAATCTGTTCCAACGTATTTCTTCTATCCGGATCAATAGGACTTTCTAACCCATCAGAGTGAGCAATGTTTAACAGATATAGCTTGCCAGATGCCACAAATGCAGCAGAAAGTATCCTCTTCAACCCTCCCCTTGTGCTATCAACCTTGTACTCAAACTCATATACTTGAAGAACTCCTTCATCCGCTCTCTCCGATACTGAAACCACTTCAGCCTCCTTTGGACTTTCCTTGGG............................................................................................................................GTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424799" ref_strand="+" ref_description="SGN-E424799 [STM-44-I13]">
      <seq>ataagatgacccttcctttcatctcctctcaattactataacacacaatgtctgccatttgctcagtagcttgctcaaatccccttcaaaatggcttctttcagggtctcccgagcatatccattaataccccattacagttgaaaacgagaaaccgatccttaattttgtcatcaaatgaattggttccaacttattcaacgagacgagcactgaatgtatcaattttgacggtgttgctgtcgatacctttctcaagctccgctattgccattggtgaggtgttagagcttgaaagatatacggattcagctgaaggtttcactctcctcaaaccctcttcttggagtaaggttgataaagctggggcaactgccctgtttcaggatgcaaacaagggatccaacaatgtgggcgttgtggttatccctgtaaaaataacaacccttagtcaattcggaactccacaattcgtggcagataagttaattctggctgaaaaacgcaaggaaagtacaaaggaggctgaagtggtttcagtatcggagagagcggatgaaggaggtcttcaagtatatgagtttgagtacaaggttgatagcacaagggggggggttgaaagagatactttctgctgcatttgtggcatctggcaagctatatctgttaaacattgctcactctgatgggttagaaagtcctattgatccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="74574" stop="71959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74274" g_stop="73909" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73908" i_stop="73255" i_length="654">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73254" g_stop="73099" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="509" r_length="156" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73098" i_stop="72461" i_length="638">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72460" g_stop="72259" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="712" r_length="203" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E424799" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74274" e_stop="73909"/>
          <exon e_start="73254" e_stop="73099"/>
          <exon e_start="72460" e_stop="72259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGATGACCCTTCCTTTCATCTCCTCTCAATTACCGTAACACACAAATGTCCGCCATTAGCTCACTGGTTTGCTCAAATATCTTTCGAAATGGCTTCTTTCAGTGTCTCCCGAGCATATCATCCATTATCACTCCATTGCAGTTGAAAACGAGAAGCAGATCCTTAGTTGTGTTATCGAATGAGGATGAGTTGGTTCCAACTTATTCAACGAGAAGACGAGCCCTGAACGTATCAATCTTGACGGTGTTGCTTTCGATACCTTTCTCAAGCTTCGCTATTGCCATTGGTGAGGTGTTAGAGCTTGAAAGATATACGGATTCAGCTGAAGGTTTCACTCTCCTCAAACCTTCTTCTTGGAGCAAGGTTCGATTTGCCCTAAATTAATTGATTATTGATAATTGTATTTGCAGCTTTTCGCTAATTAATTGGTGACTCGAATTCGCAACCTTCGGTTGAAAGTGAGGGTTGAACTCACTTTCATTTTATATGATGCGATGTTATTTGACATAAACGGAGTTTAAGAAAGGAAGTCTTTTGAGACTTGTGATTCCAAGTAATTCGTAGTTTGGTTAAGAGTCGTTTCATTTAGGCTAAAATGAACATTTTGAAATTAAATTGTTATTAGAAATGTGGCATTCTAGTGATAAAAATTGGGACAAAGGGAGTAATGTTTTAAAAAGTTTTTGGTCATTTTAGAAGTTGAGTTTTGGAATCACTTTTGGGACATCAATCAAGCACAAATTGATGATTCTAATATTGACTAAATATGCTTTTCAAATTGGTTTTGCCAAACATACTCAGCTACTTTTCAAAAGTACACTACTTTTGGTGAATTCGACACGTACTTTTGACATTTTTTAGAGTCCGAACAACATGGGATTTCAGTGTTGATTACCACCCTAGACCAAAATCGTTATCATGATTGATGTTGTGCGAAGGAGAAAAAAAATCACTCTCAGAGTTTTACCAGATGAAGAGGTTTTTGGATACTGATTATGCTATTATTGGGTTCTTCAGGTTGATAAAGCTGGGGCAACTGCCCTGTTTCAGGATGCAAACAAGGGATCCAACAATGTAGGCGTCGTGGTTATACCTGTAAAAATAACAACCCTCAGCCAATTCGGAACTCCACAATTCGTGGCAGATAAGCTAATTCTTGCTGAAAAGCGCAAGGTCAGAATCCTTTTACTTTGCTATTATATTTACTAATGAGGAAGTGGTAGCAAGTCGAAGAGTATTAATGAGGTTGAGATTCTAGTGGTTATTGTTCACATATTTTGCATTCTAGTGGTGAATCATATCCGAAGGTAACAACAACAACATAGCTAGTGAAATCCCACAAGTAGAGTCTGGGGAGAGTAGAGTGGACGCAGACCTTTCCACTACTTTGTGGAGCTAGAGAGGCTGTTTTCAAAAGACCTTCAGCTGAAGTGCAGCAAATCCAAGTACAAAGAAGAAGAAACATAGCAACTAACAAAGGAAGTAGTGTAAAGCCTACAGTAAAGGAACAAGAACAATAAAATAGTGTGATAGTCGAAACACATTAAACAACAAACGATGATAGATATCATAAGCAAGAATAATACGGCTAGTACAACAACAAACACGAAGAAGCCTAAACCCTCGAAAAGCAATAACAACCCTCCACTACCTGCTAACCTTCTACCCCTATCCTACAATCCTATCAGCAAGTGAGATTTTCAAATTTGGACTTTATAAAACGATGTTGAAAGACCGTAGATCCCACTGAAATTTTTTTGCTTCTAAGGATTATTGGCAACTAATAGTACTATGTCTTTTTTTACTTTTAGGAAAGTACAAAGGAGGCTGAAGTGGTTTCAGTATCGGAGAGAACGGGTGAAGGAGGTCTTCAAGTATATGAGTTTGAATACAAGGTCGATAGCACGA-GGGGAGGGTTGAAGAGGATACTTTCTGCTGCATTTGTTGCGTCTGGCAAGCTCTATCTGTTAAACATCGCTCACTCTGATGGGTCAGAAGGTCCTATTGATCCTG</genome_strand>
        <mrna_strand>ATAAGATGACCCTTCCTTTCATCTCCTCTCAATTACTATAACACAC-AATGTCTGCCATTTGCTCAGTAGCTTGCTCAAATCCCCTTCAAAATGGCTTCTTTCAGGGTCTCCCGAGC--AT-ATCCATTAATACCCCATTACAGTTGAAAACGAGAAACCGATCCTTAATTTTGTCATC--A--A--ATGAATTGGTTCCAACTTATTCAAC--G-AGACGAGCACTGAATGTATCAATTTTGACGGTGTTGCTGTCGATACCTTTCTCAAGCTCCGCTATTGCCATTGGTGAGGTGTTAGAGCTTGAAAGATATACGGATTCAGCTGAAGGTTTCACTCTCCTCAAACCCTCTTCTTGGAGTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAAAGCTGGGGCAACTGCCCTGTTTCAGGATGCAAACAAGGGATCCAACAATGTGGGCGTTGTGGTTATCCCTGTAAAAATAACAACCCTTAGTCAATTCGGAACTCCACAATTCGTGGCAGATAAGTTAATTCTGGCTGAAAAACGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTACAAAGGAGGCTGAAGTGGTTTCAGTATCGGAGAGAGCGGATGAAGGAGGTCTTCAAGTATATGAGTTTGAGTACAAGGTTGATAGCACAAGGGGGGGGGTTGAAAGAGATACTTTCTGCTGCATTTGTGGCATCTGGCAAGCTATATCTGTTAAACATTGCTCACTCTGATGGGTTAGAAAGTCCTATTGATCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453205" ref_strand="+" ref_description="SGN-E453205 [cSTS-19-O23]">
      <seq>ataagatgacccttcctttcatctcctctcattactataacacacaatgtctgccatttgctcagtagcttgctcaaatccccttcaaaatggcttctttcagggtctcccgagcatatccattaataccccattacagttgaaaacgagaaaccgatccttaattttgtcatcaaatgaattggttccaacttattcaacgagacgagcactgaatgtatcaattttgacggtgttgctgtcgatacctttctcaagctccgctattgccattggtgaggtgttagagcttgaaagatatacggattcagctgaaggtttcactctcctcaaaccctcttcttggagtaaggttgataaagctggggcaactgccctgtttcaggatgcaaacaagggatccaacaatgtgggcgttgtggttatccctgtaaaaataacaacccttagtcaattcggaactccacaattcgtggcagataagttaattctggctgaaaaacgcaaggaaagtacaaaggaggctgaagtggtttcagtatcggagagagcggatgaaggaagtcttcaagtatatgagtttgagtacaaggttgatagcacaaggggagggttgaagaggatactttctgctgcatttgtggcatctggcaagctatatctgttaaacattgctcactctgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="74574" stop="71981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74274" g_stop="73909" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.883"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73908" i_stop="73255" i_length="654">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73254" g_stop="73099" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="508" r_length="156" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73098" i_stop="72461" i_length="638">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72460" g_stop="72281" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="688" r_length="180" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E453205" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74274" e_stop="73909"/>
          <exon e_start="73254" e_stop="73099"/>
          <exon e_start="72460" e_stop="72281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGATGACCCTTCCTTTCATCTCCTCTCAATTACCGTAACACACAAATGTCCGCCATTAGCTCACTGGTTTGCTCAAATATCTTTCGAAATGGCTTCTTTCAGTGTCTCCCGAGCATATCATCCATTATCACTCCATTGCAGTTGAAAACGAGAAGCAGATCCTTAGTTGTGTTATCGAATGAGGATGAGTTGGTTCCAACTTATTCAACGAGAAGACGAGCCCTGAACGTATCAATCTTGACGGTGTTGCTTTCGATACCTTTCTCAAGCTTCGCTATTGCCATTGGTGAGGTGTTAGAGCTTGAAAGATATACGGATTCAGCTGAAGGTTTCACTCTCCTCAAACCTTCTTCTTGGAGCAAGGTTCGATTTGCCCTAAATTAATTGATTATTGATAATTGTATTTGCAGCTTTTCGCTAATTAATTGGTGACTCGAATTCGCAACCTTCGGTTGAAAGTGAGGGTTGAACTCACTTTCATTTTATATGATGCGATGTTATTTGACATAAACGGAGTTTAAGAAAGGAAGTCTTTTGAGACTTGTGATTCCAAGTAATTCGTAGTTTGGTTAAGAGTCGTTTCATTTAGGCTAAAATGAACATTTTGAAATTAAATTGTTATTAGAAATGTGGCATTCTAGTGATAAAAATTGGGACAAAGGGAGTAATGTTTTAAAAAGTTTTTGGTCATTTTAGAAGTTGAGTTTTGGAATCACTTTTGGGACATCAATCAAGCACAAATTGATGATTCTAATATTGACTAAATATGCTTTTCAAATTGGTTTTGCCAAACATACTCAGCTACTTTTCAAAAGTACACTACTTTTGGTGAATTCGACACGTACTTTTGACATTTTTTAGAGTCCGAACAACATGGGATTTCAGTGTTGATTACCACCCTAGACCAAAATCGTTATCATGATTGATGTTGTGCGAAGGAGAAAAAAAATCACTCTCAGAGTTTTACCAGATGAAGAGGTTTTTGGATACTGATTATGCTATTATTGGGTTCTTCAGGTTGATAAAGCTGGGGCAACTGCCCTGTTTCAGGATGCAAACAAGGGATCCAACAATGTAGGCGTCGTGGTTATACCTGTAAAAATAACAACCCTCAGCCAATTCGGAACTCCACAATTCGTGGCAGATAAGCTAATTCTTGCTGAAAAGCGCAAGGTCAGAATCCTTTTACTTTGCTATTATATTTACTAATGAGGAAGTGGTAGCAAGTCGAAGAGTATTAATGAGGTTGAGATTCTAGTGGTTATTGTTCACATATTTTGCATTCTAGTGGTGAATCATATCCGAAGGTAACAACAACAACATAGCTAGTGAAATCCCACAAGTAGAGTCTGGGGAGAGTAGAGTGGACGCAGACCTTTCCACTACTTTGTGGAGCTAGAGAGGCTGTTTTCAAAAGACCTTCAGCTGAAGTGCAGCAAATCCAAGTACAAAGAAGAAGAAACATAGCAACTAACAAAGGAAGTAGTGTAAAGCCTACAGTAAAGGAACAAGAACAATAAAATAGTGTGATAGTCGAAACACATTAAACAACAAACGATGATAGATATCATAAGCAAGAATAATACGGCTAGTACAACAACAAACACGAAGAAGCCTAAACCCTCGAAAAGCAATAACAACCCTCCACTACCTGCTAACCTTCTACCCCTATCCTACAATCCTATCAGCAAGTGAGATTTTCAAATTTGGACTTTATAAAACGATGTTGAAAGACCGTAGATCCCACTGAAATTTTTTTGCTTCTAAGGATTATTGGCAACTAATAGTACTATGTCTTTTTTTACTTTTAGGAAAGTACAAAGGAGGCTGAAGTGGTTTCAGTATCGGAGAGAACGGGTGAAGGAGGTCTTCAAGTATATGAGTTTGAATACAAGGTCGATAGCACGAGGGGAGGGTTGAAGAGGATACTTTCTGCTGCATTTGTTGCGTCTGGCAAGCTCTATCTGTTAAACATCGCTCACTCTGATGGG</genome_strand>
        <mrna_strand>ATAAGATGACCCTTCCTTTCATCTCCTCTC-ATTACTATAACACAC-AATGTCTGCCATTTGCTCAGTAGCTTGCTCAAATCCCCTTCAAAATGGCTTCTTTCAGGGTCTCCCGAGC--AT-ATCCATTAATACCCCATTACAGTTGAAAACGAGAAACCGATCCTTAATTTTGTCATC--A--A--ATGAATTGGTTCCAACTTATTCAAC--G-AGACGAGCACTGAATGTATCAATTTTGACGGTGTTGCTGTCGATACCTTTCTCAAGCTCCGCTATTGCCATTGGTGAGGTGTTAGAGCTTGAAAGATATACGGATTCAGCTGAAGGTTTCACTCTCCTCAAACCCTCTTCTTGGAGTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAAAGCTGGGGCAACTGCCCTGTTTCAGGATGCAAACAAGGGATCCAACAATGTGGGCGTTGTGGTTATCCCTGTAAAAATAACAACCCTTAGTCAATTCGGAACTCCACAATTCGTGGCAGATAAGTTAATTCTGGCTGAAAAACGCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTACAAAGGAGGCTGAAGTGGTTTCAGTATCGGAGAGAGCGGATGAAGGAAGTCTTCAAGTATATGAGTTTGAGTACAAGGTTGATAGCACAAGGGGAGGGTTGAAGAGGATACTTTCTGCTGCATTTGTGGCATCTGGCAAGCTATATCTGTTAAACATTGCTCACTCTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337009" ref_strand="+" ref_description="SGN-E337009 [cTOE-20-J7]">
      <seq>agcggtggaaaattgttcgacgtggaagacgatacgttcgatggcgaaatagcagaaaacctaaaaataaggaaattgagagcaaaaatctgaaattatagtccatttctatggtcatgtcaatgtccctgcgactttgttgcagaccttcaatttctggtttcaagaataaaagagatttgttgggcttagaattggcagcttatcaatcaagtaagacaatggggaaatggttaagtggagtgaagaagttcattccctttgagggatatgttaagtctgtgaaaacggcagcacgaatatcatttccaaagatctcagcagactgtcaagataaagagccttcaaattttttgagtcacaagaagatggttccttattcgaacccccctagcacggaagatgtggatagtttgtatgaattctttgatagaagtaccaagcttgttgtattgacgggagctggcatgagcacagagagtggaattccggattacagaagcccaaacggagcttatagtacgggtttcaaaccaattacccatcaggagtttctacgatcaatcaaggctcgaaggcgttattgggcacggagctatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="74790" stop="79976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75090" g_stop="75247" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75248" i_stop="76621" i_length="1374">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76622" g_stop="76664" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="201" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76665" i_stop="76756" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76757" g_stop="76991" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="436" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76992" i_stop="77722" i_length="731">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77723" g_stop="77788" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="502" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77789" i_stop="78366" i_length="578">
            <donor d_prob="0.176" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78367" g_stop="78412" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="548" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78413" i_stop="79622" i_length="1210">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79623" g_stop="79676" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="602" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E337009" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75090" e_stop="75247"/>
          <exon e_start="76622" e_stop="76664"/>
          <exon e_start="76757" e_stop="76991"/>
          <exon e_start="77723" e_stop="77788"/>
          <exon e_start="78367" e_stop="78412"/>
          <exon e_start="79623" e_stop="79676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGTGGAAAATTGTTCGACGTGGAAGACGATACGTTCGATGGCGAAATAGCAGAAAACCTAAAAATAAGGAAATTGAGAGCAAAAATCTGAAATTATAGTCCATTTCTATGGTCATGTCAATGTCCCTGCGACTTTGTTGCAGACCTTCAATTTCTGTAAGTTTATAATAATCTAACCAGCAGCAAATTTTATCTAATTGTTGATTTCGTTGATGTTTTTATGCTAAATTGCTGTAAGTTTTAGATTTATGAGATACATTTCTAGACGTATAGTGGGAAGTGTTTTCTCTCTCTTTTGTTTCTTCTTCCCTTTTTTGTTTTGTTTTGTTTTTGCTTTTGAAGTTTGATCTAATCATATGGCGCCTATGGGTTGGGTAGGCTTAGTGGTCAATGACGTAAGTTAAGTTGTAAGTATCATGAGGTTTGAAGTTCAATTCTCAATAGAAACAAAAACACTAGTTGATTTGGATCGAGGTATGTGGCATTTGTTGCTGGTGACAGGTGATAGGTATATGTGGAATTAGTCGAGGTGTAAAAGTTGGTCCAAGCAGTTCGGTTATAAGAAAAAAAGGTTATCATATGCGAGGACCAAATGACCCGTACATGTATCTTTTAGTTAGATAAAAATGGACTTGGTGCCAGTTCGCTTGCACTTTGACTAATATCAAGTGTATTTGCTACCTCACACCAGTAAATACCGAGTAAGTGCCCGTTTGGATTGACTTATTTTAGGTGCTTTTAAGCCAAAATAGCTTTTAATCAGTTTTGAAGTGTTTGGGTAAAGCTAAAATGACAGAAATAAGTTAAAAGTCAAACTCCAGAAAATCTTACTTATGACTTTTGGCTTATAATTCATAAGCCAAAAGCCAATCCAAACAGGCCCTAACACTATCCATCAAGCTGTCCTTACTCCTTACCTCGTATTTTTGCATCGGTTGTTGGTTAAACCTGACACCTTCCGATTCTCAACCTACTTCGTTGTCCATACTAGACCAGTATATTTATACAAGGGGATTCAAAAGAGTGCTAGAATATCACAACTGGAAATTGGAATTGTGAATTAAAGCAAATACTTGGTAGCTCTGTCTATCAAGGCTGTCCTTACTTAGTATTTTTGTTTCAGCTAGGTTTTATACATGACACCTCATATTCTCAACGTCCTTCATTGACCACTAGACTAATATATTTGTTCACGGGGATTCAAAGAAGTGCTAGAATATCACAATTAGAAATTGTAGCTGTGACTTAAAGCAAATTTTTGAACCTTTCTTTATTACTACGCTGGAATCTTCTGTTTATATTCAACAATTTACACAACAACTACCTCATATATATAACAAAAGATAGTTCATTTTTACTCTATTTGGACAGTATGATTTACAGTGAAGGGGATTCAATTGAACCCCTTATCTTTACTTAGCTCCAAAGTCCAAACCTTTTCTTTTGGATATTAGAGTGATGGTACCTATAATATAACATTTTTGGTGGTGTGGATAAATTATAATGATAACATGCGAATTGAATGGGCAGGGTTTCAAGAATAAAAGAGATTTGTTGGGCTTAGAATTGGCAGGTAAGTCTTTGTTCATGAAAACCAAGTTCTTAATGTATGAACTTATTAGATGGCTCTGGCTCTGAGCAGTTTTTTTTCTTTTGTGTTTACAGCTTATCAATCAAGTAAGACAATGGGGAAATGGTTAAGTGGAGTGAAGAAGTTCATTCCCTTTGAGGGATATGTTAAGTCTGTGAAAACGGCAGCACGAATATCATTTCCAAAGATCTCAGCAGACTGTCAAGATAAAGAGCCTTCAAATTTTTTGAGTCACAAGAAGATGGTTCCTTATTCGAACCCCCCTAGCACGGAAGATGTGGATAGTTTGTATGAATTCTTTGATAGAAGGTAGGAATTGTGCTCCTTCTCTGTTTTGAATTAGAAAGGTCAAAAAAATACAAAACGGAAGTTTAACTAATTCTATTGTGCTGGAGAATACTTGGTTATACTTGGAGAAATTTGGTCGATTAGTTGTTTGCCGTTTTTCTTTTGTGCTGGTTGATTAATTGTGAAATGTGTTTTACTACAAAAGAGAGTGCAACTGAATTAGCATTTCCTAAGCAATAATCAAAGATAGAATCCCTTGAAACTTATGACATCATTTACATCAAATCCCTCAATTTATTTCTTGCATTTGGTAGATTTATAACAATAACAAGACCGTTGATTCTGACTACACTTCTCTTTACTGCTATTAAGTTCAATATTTTGAAGTCATAAAATTCAAAAAAAAAAAGAGGAAGAAAGATATTATTTCAAAGTCGTTTAGCTAAATAATATGTAGTTAAAAGTCCAAGTAGCTAAAGTTTTTGTGATATAATACACATAGTATAGATGTGTTTTTAATTATTATCTGAATTGACTACTACTATGTGATAGGCCTACATGCAATTACTTTCTATATTACAAACTAGAGCTTTAGTGGTGATTCATTTGCTGATTCTTTAATTGTAGGTCAAATTGGGTGTCCCTTTAACCACACTTCAGTTATAAAATACTACTTCCTTTTGTGTTTTCTTCTAATATCAACTACACTATGATATCAATTACTGACTGGTTCCTTTCCATTGTTTTTGTAGTACCAAGCTTGTTGTATTGACGGGAGCTGGCATGAGCACAGAGAGTGGAATTCCGGATTACAGAAGGTTGGTTTAAAACTAGATGAGCATGCTCAACGTTCTCAGCAGTTAACAGTTTGATCATTCTCTGAAGTTGATAATCTGAGTTACACTTCAAAAGGAAATACATTTTTACTGCAAAGGGAGGAAGACGTTGTCAATATTTAATTTCTTATCCTAGCTGAGTTACATTTCTATAAAGGAAGACACATTTCTTATTAAAATAAGAAGGCTGTCAACATTTAGTTTTACTGCTATTTGGTGCAGTTATAAACAAATTAAAACATCTGACTTTTTGGGTGTTGAGCATTTATATAAATTGTATGAAGTGAGGATTAAATCTGAAAGTGCGGCGAGATGTCCTGTTTGATTCAATGCTGGACGGTATGTGAAACCAAAGTTTCTTTGTAATTACTCTATTTTGAGCATTCCCTGCAGTTTTCGCCTTTTTCTATAGGGTGGTACGTCTGTGTTGTGTTTAAGAGTGTAGTTGGGGATTCAGTATTACAGCTTTGTGCTGCTTCTAGATTTTATTTTGGGCTGTATAAAGAAGTTAAGTGATATTTTTGGACAAATGGTAATGCTTTTCCCTCTTCTCTTGGCAGCCCAAACGGAGCTTATAGTACGGGTTTCAAACCAATTACCCATCAGGTGATTTGAAGGCATGTGCTATGATTCTGGGTTCCATTAAAGTGTCATTATTCATTTATAAATACCATTTCTTGCATATTTGAAAGAGGAAAAAGAATGTATTAGTCTACTACGGATTTAGTTCTGTTCATCTCTAGACCTATATATTTCTTGTAGACAATAAATCCTACATGAATTTAGTTGTGGTCATCTCCAGAAATATATACATGATACAACAACAGTCCCAAATAAATCAGGATTGACTTATGAATACTCATGATTCTCTATTTAAGCTCAAATCATGTCATCATCATACCCAAAAAGTACTTTAAAAAATAAGTTAGACCTATTCCCAACTAGTAGATCTCATCTATATGGATCTTTTCCTTCTGCTGTGTCCTATCTTTAGCTAAGTGTGCTTTGATTCCCAGAAATTGTAGGTCTTTCGAGACAACTTCCTTATTGTGATTCCTACCTCTTCCTCGTTAACACGTTCACTCACCATAGTTGCATTTGCACATCTATGAACAAGATGTACTGGTTGCAGCTGTAGGTCGATGCAGAGCATGACCAAACATCTCAGGCAACCTTCTCCCGTTTTATCCTCAATGCATACTACTTGCACTGTCTGGCAAATTTGATCATTTCTTAATCTTATCCATCCTTCGGGCTATCACATTATACCCTAGTAGCACTTCTCCATTTCAACCATTTAGTGCTAATTCCCGGAGTAATATCTAGATATGCAAACTGATTGTACTTTGGCACCACCACCCCGTGTAGTCTCACCTCAACTTCGCTCTTCTCATGCTGACTAAACTTGCATGCGTGTCAATTATTCCACTAGTTAGTTGCTACCTCTTGCCAGAACAGGTACCGACTCTATGTTGCTCAGATTCTCCATAAATGATGTTGCAGCCGTGTTGGATCCTTCAAAATGTACTACTTTTGAAGGATCCGACATGCACCCGTAGACATTTTTTGAAGATCCAAGGAACATAGGCCATGCCATAACTCTATCACTAATGCTTAGGCAGATAGGAAGTAATCACCTAGTGATTTTTCCTTTTTTAGGATTTGAATTGGTCTCCCAAAGTTACAATCCCGCTTCATTTTCTGCTAAACCACATTCTTAGGTGCTAGAAAAAGCTCCGTTTTCATTAAAATTTACAGAGTCAGCTTTTGCTTACTGCCTACATTCTAACTGTCTGATTTATATATCCAATTGTAGGAGTTTCTACGATCAATCAAGGCTCGAAGGCGTTATTGGGCACGGAGCTATGCT</genome_strand>
        <mrna_strand>AGCGGTGGAAAATTGTTCGACGTGGAAGACGATACGTTCGATGGCGAAATAGCAGAAAACCTAAAAATAAGGAAATTGAGAGCAAAAATCTGAAATTATAGTCCATTTCTATGGTCATGTCAATGTCCCTGCGACTTTGTTGCAGACCTTCAATTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAAGAATAAAAGAGATTTGTTGGGCTTAGAATTGGCAG............................................................................................CTTATCAATCAAGTAAGACAATGGGGAAATGGTTAAGTGGAGTGAAGAAGTTCATTCCCTTTGAGGGATATGTTAAGTCTGTGAAAACGGCAGCACGAATATCATTTCCAAAGATCTCAGCAGACTGTCAAGATAAAGAGCCTTCAAATTTTTTGAGTCACAAGAAGATGGTTCCTTATTCGAACCCCCCTAGCACGGAAGATGTGGATAGTTTGTATGAATTCTTTGATAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAAGCTTGTTGTATTGACGGGAGCTGGCATGAGCACAGAGAGTGGAATTCCGGATTACAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAACGGAGCTTATAGTACGGGTTTCAAACCAATTACCCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTCTACGATCAATCAAGGCTCGAAGGCGTTATTGGGCACGGAGCTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308221" ref_strand="+" ref_description="SGN-E308221 [cLEY-14-L4]">
      <seq>ttcgacgtggaagacgatacgttcgatggcgaaatagcagaaaacctaaaaataaggaaattgagagcaaaaatctgaaattatagtccatttctatggtcatgtcaatgtccctgcgactttgttgcagaccttcaatttctggtttcaagaataaaagagatttgttgggcttagaattggcagcttatcaatcaagtaagacaatggggaaatggttaagtggagtgaagaagttcattccctttgagggatatgttaagtctgtgaaaacggcagcacgaatatcatttccaaagatctcagcagactgtcaagataaagagccttcaaattttttgagtcacaagaagatggttccttattcgaacccccctagcacggaagatgtggatagtttgtatgaattctttgatagaagtaccaagcttgttgtattgacgggagctggcatgagcacagagagtggaattccggattacagaagcccaaacggagcttatagtacgggtttcaaaccaattacccatcaggagtttctacgatcaatcaaggctcgaaggcgttattgggcacggagctatgctggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="74805" stop="79980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75105" g_stop="75247" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75248" i_stop="76621" i_length="1374">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76622" g_stop="76664" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="186" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76665" i_stop="76756" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76757" g_stop="76991" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="421" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76992" i_stop="77722" i_length="731">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77723" g_stop="77788" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="487" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77789" i_stop="78366" i_length="578">
            <donor d_prob="0.176" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78367" g_stop="78412" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="533" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78413" i_stop="79622" i_length="1210">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79623" g_stop="79680" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="591" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E308221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75105" e_stop="75247"/>
          <exon e_start="76622" e_stop="76664"/>
          <exon e_start="76757" e_stop="76991"/>
          <exon e_start="77723" e_stop="77788"/>
          <exon e_start="78367" e_stop="78412"/>
          <exon e_start="79623" e_stop="79680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACGTGGAAGACGATACGTTCGATGGCGAAATAGCAGAAAACCTAAAAATAAGGAAATTGAGAGCAAAAATCTGAAATTATAGTCCATTTCTATGGTCATGTCAATGTCCCTGCGACTTTGTTGCAGACCTTCAATTTCTGTAAGTTTATAATAATCTAACCAGCAGCAAATTTTATCTAATTGTTGATTTCGTTGATGTTTTTATGCTAAATTGCTGTAAGTTTTAGATTTATGAGATACATTTCTAGACGTATAGTGGGAAGTGTTTTCTCTCTCTTTTGTTTCTTCTTCCCTTTTTTGTTTTGTTTTGTTTTTGCTTTTGAAGTTTGATCTAATCATATGGCGCCTATGGGTTGGGTAGGCTTAGTGGTCAATGACGTAAGTTAAGTTGTAAGTATCATGAGGTTTGAAGTTCAATTCTCAATAGAAACAAAAACACTAGTTGATTTGGATCGAGGTATGTGGCATTTGTTGCTGGTGACAGGTGATAGGTATATGTGGAATTAGTCGAGGTGTAAAAGTTGGTCCAAGCAGTTCGGTTATAAGAAAAAAAGGTTATCATATGCGAGGACCAAATGACCCGTACATGTATCTTTTAGTTAGATAAAAATGGACTTGGTGCCAGTTCGCTTGCACTTTGACTAATATCAAGTGTATTTGCTACCTCACACCAGTAAATACCGAGTAAGTGCCCGTTTGGATTGACTTATTTTAGGTGCTTTTAAGCCAAAATAGCTTTTAATCAGTTTTGAAGTGTTTGGGTAAAGCTAAAATGACAGAAATAAGTTAAAAGTCAAACTCCAGAAAATCTTACTTATGACTTTTGGCTTATAATTCATAAGCCAAAAGCCAATCCAAACAGGCCCTAACACTATCCATCAAGCTGTCCTTACTCCTTACCTCGTATTTTTGCATCGGTTGTTGGTTAAACCTGACACCTTCCGATTCTCAACCTACTTCGTTGTCCATACTAGACCAGTATATTTATACAAGGGGATTCAAAAGAGTGCTAGAATATCACAACTGGAAATTGGAATTGTGAATTAAAGCAAATACTTGGTAGCTCTGTCTATCAAGGCTGTCCTTACTTAGTATTTTTGTTTCAGCTAGGTTTTATACATGACACCTCATATTCTCAACGTCCTTCATTGACCACTAGACTAATATATTTGTTCACGGGGATTCAAAGAAGTGCTAGAATATCACAATTAGAAATTGTAGCTGTGACTTAAAGCAAATTTTTGAACCTTTCTTTATTACTACGCTGGAATCTTCTGTTTATATTCAACAATTTACACAACAACTACCTCATATATATAACAAAAGATAGTTCATTTTTACTCTATTTGGACAGTATGATTTACAGTGAAGGGGATTCAATTGAACCCCTTATCTTTACTTAGCTCCAAAGTCCAAACCTTTTCTTTTGGATATTAGAGTGATGGTACCTATAATATAACATTTTTGGTGGTGTGGATAAATTATAATGATAACATGCGAATTGAATGGGCAGGGTTTCAAGAATAAAAGAGATTTGTTGGGCTTAGAATTGGCAGGTAAGTCTTTGTTCATGAAAACCAAGTTCTTAATGTATGAACTTATTAGATGGCTCTGGCTCTGAGCAGTTTTTTTTCTTTTGTGTTTACAGCTTATCAATCAAGTAAGACAATGGGGAAATGGTTAAGTGGAGTGAAGAAGTTCATTCCCTTTGAGGGATATGTTAAGTCTGTGAAAACGGCAGCACGAATATCATTTCCAAAGATCTCAGCAGACTGTCAAGATAAAGAGCCTTCAAATTTTTTGAGTCACAAGAAGATGGTTCCTTATTCGAACCCCCCTAGCACGGAAGATGTGGATAGTTTGTATGAATTCTTTGATAGAAGGTAGGAATTGTGCTCCTTCTCTGTTTTGAATTAGAAAGGTCAAAAAAATACAAAACGGAAGTTTAACTAATTCTATTGTGCTGGAGAATACTTGGTTATACTTGGAGAAATTTGGTCGATTAGTTGTTTGCCGTTTTTCTTTTGTGCTGGTTGATTAATTGTGAAATGTGTTTTACTACAAAAGAGAGTGCAACTGAATTAGCATTTCCTAAGCAATAATCAAAGATAGAATCCCTTGAAACTTATGACATCATTTACATCAAATCCCTCAATTTATTTCTTGCATTTGGTAGATTTATAACAATAACAAGACCGTTGATTCTGACTACACTTCTCTTTACTGCTATTAAGTTCAATATTTTGAAGTCATAAAATTCAAAAAAAAAAAGAGGAAGAAAGATATTATTTCAAAGTCGTTTAGCTAAATAATATGTAGTTAAAAGTCCAAGTAGCTAAAGTTTTTGTGATATAATACACATAGTATAGATGTGTTTTTAATTATTATCTGAATTGACTACTACTATGTGATAGGCCTACATGCAATTACTTTCTATATTACAAACTAGAGCTTTAGTGGTGATTCATTTGCTGATTCTTTAATTGTAGGTCAAATTGGGTGTCCCTTTAACCACACTTCAGTTATAAAATACTACTTCCTTTTGTGTTTTCTTCTAATATCAACTACACTATGATATCAATTACTGACTGGTTCCTTTCCATTGTTTTTGTAGTACCAAGCTTGTTGTATTGACGGGAGCTGGCATGAGCACAGAGAGTGGAATTCCGGATTACAGAAGGTTGGTTTAAAACTAGATGAGCATGCTCAACGTTCTCAGCAGTTAACAGTTTGATCATTCTCTGAAGTTGATAATCTGAGTTACACTTCAAAAGGAAATACATTTTTACTGCAAAGGGAGGAAGACGTTGTCAATATTTAATTTCTTATCCTAGCTGAGTTACATTTCTATAAAGGAAGACACATTTCTTATTAAAATAAGAAGGCTGTCAACATTTAGTTTTACTGCTATTTGGTGCAGTTATAAACAAATTAAAACATCTGACTTTTTGGGTGTTGAGCATTTATATAAATTGTATGAAGTGAGGATTAAATCTGAAAGTGCGGCGAGATGTCCTGTTTGATTCAATGCTGGACGGTATGTGAAACCAAAGTTTCTTTGTAATTACTCTATTTTGAGCATTCCCTGCAGTTTTCGCCTTTTTCTATAGGGTGGTACGTCTGTGTTGTGTTTAAGAGTGTAGTTGGGGATTCAGTATTACAGCTTTGTGCTGCTTCTAGATTTTATTTTGGGCTGTATAAAGAAGTTAAGTGATATTTTTGGACAAATGGTAATGCTTTTCCCTCTTCTCTTGGCAGCCCAAACGGAGCTTATAGTACGGGTTTCAAACCAATTACCCATCAGGTGATTTGAAGGCATGTGCTATGATTCTGGGTTCCATTAAAGTGTCATTATTCATTTATAAATACCATTTCTTGCATATTTGAAAGAGGAAAAAGAATGTATTAGTCTACTACGGATTTAGTTCTGTTCATCTCTAGACCTATATATTTCTTGTAGACAATAAATCCTACATGAATTTAGTTGTGGTCATCTCCAGAAATATATACATGATACAACAACAGTCCCAAATAAATCAGGATTGACTTATGAATACTCATGATTCTCTATTTAAGCTCAAATCATGTCATCATCATACCCAAAAAGTACTTTAAAAAATAAGTTAGACCTATTCCCAACTAGTAGATCTCATCTATATGGATCTTTTCCTTCTGCTGTGTCCTATCTTTAGCTAAGTGTGCTTTGATTCCCAGAAATTGTAGGTCTTTCGAGACAACTTCCTTATTGTGATTCCTACCTCTTCCTCGTTAACACGTTCACTCACCATAGTTGCATTTGCACATCTATGAACAAGATGTACTGGTTGCAGCTGTAGGTCGATGCAGAGCATGACCAAACATCTCAGGCAACCTTCTCCCGTTTTATCCTCAATGCATACTACTTGCACTGTCTGGCAAATTTGATCATTTCTTAATCTTATCCATCCTTCGGGCTATCACATTATACCCTAGTAGCACTTCTCCATTTCAACCATTTAGTGCTAATTCCCGGAGTAATATCTAGATATGCAAACTGATTGTACTTTGGCACCACCACCCCGTGTAGTCTCACCTCAACTTCGCTCTTCTCATGCTGACTAAACTTGCATGCGTGTCAATTATTCCACTAGTTAGTTGCTACCTCTTGCCAGAACAGGTACCGACTCTATGTTGCTCAGATTCTCCATAAATGATGTTGCAGCCGTGTTGGATCCTTCAAAATGTACTACTTTTGAAGGATCCGACATGCACCCGTAGACATTTTTTGAAGATCCAAGGAACATAGGCCATGCCATAACTCTATCACTAATGCTTAGGCAGATAGGAAGTAATCACCTAGTGATTTTTCCTTTTTTAGGATTTGAATTGGTCTCCCAAAGTTACAATCCCGCTTCATTTTCTGCTAAACCACATTCTTAGGTGCTAGAAAAAGCTCCGTTTTCATTAAAATTTACAGAGTCAGCTTTTGCTTACTGCCTACATTCTAACTGTCTGATTTATATATCCAATTGTAGGAGTTTCTACGATCAATCAAGGCTCGAAGGCGTTATTGGGCACGGAGCTATGCTGGCT</genome_strand>
        <mrna_strand>TTCGACGTGGAAGACGATACGTTCGATGGCGAAATAGCAGAAAACCTAAAAATAAGGAAATTGAGAGCAAAAATCTGAAATTATAGTCCATTTCTATGGTCATGTCAATGTCCCTGCGACTTTGTTGCAGACCTTCAATTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAAGAATAAAAGAGATTTGTTGGGCTTAGAATTGGCAG............................................................................................CTTATCAATCAAGTAAGACAATGGGGAAATGGTTAAGTGGAGTGAAGAAGTTCATTCCCTTTGAGGGATATGTTAAGTCTGTGAAAACGGCAGCACGAATATCATTTCCAAAGATCTCAGCAGACTGTCAAGATAAAGAGCCTTCAAATTTTTTGAGTCACAAGAAGATGGTTCCTTATTCGAACCCCCCTAGCACGGAAGATGTGGATAGTTTGTATGAATTCTTTGATAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAAGCTTGTTGTATTGACGGGAGCTGGCATGAGCACAGAGAGTGGAATTCCGGATTACAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAACGGAGCTTATAGTACGGGTTTCAAACCAATTACCCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTCTACGATCAATCAAGGCTCGAAGGCGTTATTGGGCACGGAGCTATGCTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588399" ref_strand="+" ref_description="SGN-E588399 [41951]">
      <seq>gtcgacgtggaagacgatacgttcgatggcggaacagcagagaacctaaaaataaggaaattgagagcaaaaatctgaaattatagtccatttctatggccatgtcaatgtcactgcgactttgttgcagaccttcaatttctggcttcaagaataaaagagatttgttgggcttagaattggcagcttatcaatcaagtaatccaatggggaaatggtttagtggagtgaagaagttcatcccctttgagggatatgctaagtctgtgaaaacagcagcacgaatatcatttccaaagatctcatcagactgtacagataaagaaccttcaaattttttgagtcacaagaagatggttccttattcggacccgcctagcatggaagatgtggaaagtttgtatgaattctttgatagaagtaccaagcttgttgtattgacgggaactggcatgagcacagagagtggaattccgggattacagaagcccaaacggagcttatagtacgggtttcaaaccaattacccatcaggagtttctccgatcaatcaaggctcgaaggcgttattgggcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="74806" stop="79966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75105" g_stop="75247" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75248" i_stop="76621" i_length="1374">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76622" g_stop="76664" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="186" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76665" i_stop="76756" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76757" g_stop="76991" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="421" r_length="235" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76992" i_stop="77722" i_length="731">
            <donor d_prob="0.952" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77723" g_stop="77788" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="488" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77789" i_stop="78366" i_length="578">
            <donor d_prob="0.176" d_score="0.94"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78367" g_stop="78412" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="534" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78413" i_stop="79622" i_length="1210">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79623" g_stop="79666" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="578" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E588399" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75105" e_stop="75247"/>
          <exon e_start="76622" e_stop="76664"/>
          <exon e_start="76757" e_stop="76991"/>
          <exon e_start="77723" e_stop="77788"/>
          <exon e_start="78367" e_stop="78412"/>
          <exon e_start="79623" e_stop="79666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGACGTGGAAGACGATACGTTCGATGGCGAAATAGCAGAAAACCTAAAAATAAGGAAATTGAGAGCAAAAATCTGAAATTATAGTCCATTTCTATGGTCATGTCAATGTCCCTGCGACTTTGTTGCAGACCTTCAATTTCTGTAAGTTTATAATAATCTAACCAGCAGCAAATTTTATCTAATTGTTGATTTCGTTGATGTTTTTATGCTAAATTGCTGTAAGTTTTAGATTTATGAGATACATTTCTAGACGTATAGTGGGAAGTGTTTTCTCTCTCTTTTGTTTCTTCTTCCCTTTTTTGTTTTGTTTTGTTTTTGCTTTTGAAGTTTGATCTAATCATATGGCGCCTATGGGTTGGGTAGGCTTAGTGGTCAATGACGTAAGTTAAGTTGTAAGTATCATGAGGTTTGAAGTTCAATTCTCAATAGAAACAAAAACACTAGTTGATTTGGATCGAGGTATGTGGCATTTGTTGCTGGTGACAGGTGATAGGTATATGTGGAATTAGTCGAGGTGTAAAAGTTGGTCCAAGCAGTTCGGTTATAAGAAAAAAAGGTTATCATATGCGAGGACCAAATGACCCGTACATGTATCTTTTAGTTAGATAAAAATGGACTTGGTGCCAGTTCGCTTGCACTTTGACTAATATCAAGTGTATTTGCTACCTCACACCAGTAAATACCGAGTAAGTGCCCGTTTGGATTGACTTATTTTAGGTGCTTTTAAGCCAAAATAGCTTTTAATCAGTTTTGAAGTGTTTGGGTAAAGCTAAAATGACAGAAATAAGTTAAAAGTCAAACTCCAGAAAATCTTACTTATGACTTTTGGCTTATAATTCATAAGCCAAAAGCCAATCCAAACAGGCCCTAACACTATCCATCAAGCTGTCCTTACTCCTTACCTCGTATTTTTGCATCGGTTGTTGGTTAAACCTGACACCTTCCGATTCTCAACCTACTTCGTTGTCCATACTAGACCAGTATATTTATACAAGGGGATTCAAAAGAGTGCTAGAATATCACAACTGGAAATTGGAATTGTGAATTAAAGCAAATACTTGGTAGCTCTGTCTATCAAGGCTGTCCTTACTTAGTATTTTTGTTTCAGCTAGGTTTTATACATGACACCTCATATTCTCAACGTCCTTCATTGACCACTAGACTAATATATTTGTTCACGGGGATTCAAAGAAGTGCTAGAATATCACAATTAGAAATTGTAGCTGTGACTTAAAGCAAATTTTTGAACCTTTCTTTATTACTACGCTGGAATCTTCTGTTTATATTCAACAATTTACACAACAACTACCTCATATATATAACAAAAGATAGTTCATTTTTACTCTATTTGGACAGTATGATTTACAGTGAAGGGGATTCAATTGAACCCCTTATCTTTACTTAGCTCCAAAGTCCAAACCTTTTCTTTTGGATATTAGAGTGATGGTACCTATAATATAACATTTTTGGTGGTGTGGATAAATTATAATGATAACATGCGAATTGAATGGGCAGGGTTTCAAGAATAAAAGAGATTTGTTGGGCTTAGAATTGGCAGGTAAGTCTTTGTTCATGAAAACCAAGTTCTTAATGTATGAACTTATTAGATGGCTCTGGCTCTGAGCAGTTTTTTTTCTTTTGTGTTTACAGCTTATCAATCAAGTAAGACAATGGGGAAATGGTTAAGTGGAGTGAAGAAGTTCATTCCCTTTGAGGGATATGTTAAGTCTGTGAAAACGGCAGCACGAATATCATTTCCAAAGATCTCAGCAGACTGTCAAGATAAAGAGCCTTCAAATTTTTTGAGTCACAAGAAGATGGTTCCTTATTCGAACCCCCCTAGCACGGAAGATGTGGATAGTTTGTATGAATTCTTTGATAGAAGGTAGGAATTGTGCTCCTTCTCTGTTTTGAATTAGAAAGGTCAAAAAAATACAAAACGGAAGTTTAACTAATTCTATTGTGCTGGAGAATACTTGGTTATACTTGGAGAAATTTGGTCGATTAGTTGTTTGCCGTTTTTCTTTTGTGCTGGTTGATTAATTGTGAAATGTGTTTTACTACAAAAGAGAGTGCAACTGAATTAGCATTTCCTAAGCAATAATCAAAGATAGAATCCCTTGAAACTTATGACATCATTTACATCAAATCCCTCAATTTATTTCTTGCATTTGGTAGATTTATAACAATAACAAGACCGTTGATTCTGACTACACTTCTCTTTACTGCTATTAAGTTCAATATTTTGAAGTCATAAAATTCAAAAAAAAAAAGAGGAAGAAAGATATTATTTCAAAGTCGTTTAGCTAAATAATATGTAGTTAAAAGTCCAAGTAGCTAAAGTTTTTGTGATATAATACACATAGTATAGATGTGTTTTTAATTATTATCTGAATTGACTACTACTATGTGATAGGCCTACATGCAATTACTTTCTATATTACAAACTAGAGCTTTAGTGGTGATTCATTTGCTGATTCTTTAATTGTAGGTCAAATTGGGTGTCCCTTTAACCACACTTCAGTTATAAAATACTACTTCCTTTTGTGTTTTCTTCTAATATCAACTACACTATGATATCAATTACTGACTGGTTCCTTTCCATTGTTTTTGTAGTACCAAGCTTGTTGTATTGACGGGAGCTGGCATGAGCACAGAGAGTGGAATTCC-GGATTACAGAAGGTTGGTTTAAAACTAGATGAGCATGCTCAACGTTCTCAGCAGTTAACAGTTTGATCATTCTCTGAAGTTGATAATCTGAGTTACACTTCAAAAGGAAATACATTTTTACTGCAAAGGGAGGAAGACGTTGTCAATATTTAATTTCTTATCCTAGCTGAGTTACATTTCTATAAAGGAAGACACATTTCTTATTAAAATAAGAAGGCTGTCAACATTTAGTTTTACTGCTATTTGGTGCAGTTATAAACAAATTAAAACATCTGACTTTTTGGGTGTTGAGCATTTATATAAATTGTATGAAGTGAGGATTAAATCTGAAAGTGCGGCGAGATGTCCTGTTTGATTCAATGCTGGACGGTATGTGAAACCAAAGTTTCTTTGTAATTACTCTATTTTGAGCATTCCCTGCAGTTTTCGCCTTTTTCTATAGGGTGGTACGTCTGTGTTGTGTTTAAGAGTGTAGTTGGGGATTCAGTATTACAGCTTTGTGCTGCTTCTAGATTTTATTTTGGGCTGTATAAAGAAGTTAAGTGATATTTTTGGACAAATGGTAATGCTTTTCCCTCTTCTCTTGGCAGCCCAAACGGAGCTTATAGTACGGGTTTCAAACCAATTACCCATCAGGTGATTTGAAGGCATGTGCTATGATTCTGGGTTCCATTAAAGTGTCATTATTCATTTATAAATACCATTTCTTGCATATTTGAAAGAGGAAAAAGAATGTATTAGTCTACTACGGATTTAGTTCTGTTCATCTCTAGACCTATATATTTCTTGTAGACAATAAATCCTACATGAATTTAGTTGTGGTCATCTCCAGAAATATATACATGATACAACAACAGTCCCAAATAAATCAGGATTGACTTATGAATACTCATGATTCTCTATTTAAGCTCAAATCATGTCATCATCATACCCAAAAAGTACTTTAAAAAATAAGTTAGACCTATTCCCAACTAGTAGATCTCATCTATATGGATCTTTTCCTTCTGCTGTGTCCTATCTTTAGCTAAGTGTGCTTTGATTCCCAGAAATTGTAGGTCTTTCGAGACAACTTCCTTATTGTGATTCCTACCTCTTCCTCGTTAACACGTTCACTCACCATAGTTGCATTTGCACATCTATGAACAAGATGTACTGGTTGCAGCTGTAGGTCGATGCAGAGCATGACCAAACATCTCAGGCAACCTTCTCCCGTTTTATCCTCAATGCATACTACTTGCACTGTCTGGCAAATTTGATCATTTCTTAATCTTATCCATCCTTCGGGCTATCACATTATACCCTAGTAGCACTTCTCCATTTCAACCATTTAGTGCTAATTCCCGGAGTAATATCTAGATATGCAAACTGATTGTACTTTGGCACCACCACCCCGTGTAGTCTCACCTCAACTTCGCTCTTCTCATGCTGACTAAACTTGCATGCGTGTCAATTATTCCACTAGTTAGTTGCTACCTCTTGCCAGAACAGGTACCGACTCTATGTTGCTCAGATTCTCCATAAATGATGTTGCAGCCGTGTTGGATCCTTCAAAATGTACTACTTTTGAAGGATCCGACATGCACCCGTAGACATTTTTTGAAGATCCAAGGAACATAGGCCATGCCATAACTCTATCACTAATGCTTAGGCAGATAGGAAGTAATCACCTAGTGATTTTTCCTTTTTTAGGATTTGAATTGGTCTCCCAAAGTTACAATCCCGCTTCATTTTCTGCTAAACCACATTCTTAGGTGCTAGAAAAAGCTCCGTTTTCATTAAAATTTACAGAGTCAGCTTTTGCTTACTGCCTACATTCTAACTGTCTGATTTATATATCCAATTGTAGGAGTTTCTACGATCAATCAAGGCTCGAAGGCGTTATTGGGCACG</genome_strand>
        <mrna_strand>GTCGACGTGGAAGACGATACGTTCGATGGCGGAACAGCAGAGAACCTAAAAATAAGGAAATTGAGAGCAAAAATCTGAAATTATAGTCCATTTCTATGGCCATGTCAATGTCACTGCGACTTTGTTGCAGACCTTCAATTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCAAGAATAAAAGAGATTTGTTGGGCTTAGAATTGGCAG............................................................................................CTTATCAATCAAGTAATCCAATGGGGAAATGGTTTAGTGGAGTGAAGAAGTTCATCCCCTTTGAGGGATATGCTAAGTCTGTGAAAACAGCAGCACGAATATCATTTCCAAAGATCTCATCAGACTGTACAGATAAAGAACCTTCAAATTTTTTGAGTCACAAGAAGATGGTTCCTTATTCGGACCCGCCTAGCATGGAAGATGTGGAAAGTTTGTATGAATTCTTTGATAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAAGCTTGTTGTATTGACGGGAACTGGCATGAGCACAGAGAGTGGAATTCCGGGATTACAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAACGGAGCTTATAGTACGGGTTTCAAACCAATTACCCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTCTCCGATCAATCAAGGCTCGAAGGCGTTATTGGGCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575658" ref_strand="+" ref_description="SGN-E575658 [35318]">
      <seq>tcgacgtggaagacgatacgttcgatggcggaacagcagagaacctaaaaataaggaaattgagagcaaaaatctgaaattatagtccatttctatggccatgtcaatgtcactgcgactttgttgcagaccttcaatttctggcttcaagaataaaagagatttgttgggcttagaattggcagcttatcaatcaagtaatccaatggggaaatggtttagtggagtgaagaagttcatcccctttgagggatatgctaagtctgtgaaaacagcagcacgaatatcatttccaaagatctcatcagactgtacagataaagaaccttcaaattttttgagtcacaagaagatggttccttattcggacccgcctagcatggaagatgtggaaagtttgtatgaattctttgatagaagtaccaagcttgttgtattgacgggagctggcatgagcacagagagtggaattccggattacagaagcccaaacggagcttatagtacgggtttcaaaccaattacccatcaggagtttctccgatcaatcaaggctcgaaggcgttattgggcacggagctatgctggatggagacgtttcactgctgctcaacctagtacaggtcatatagctctatcatctcttgagaaagcaggccatataagttttatgatcacacaggaatgtggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="74806" stop="80082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75106" g_stop="75247" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75248" i_stop="76621" i_length="1374">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76622" g_stop="76664" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="185" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76665" i_stop="76756" i_length="92">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76757" g_stop="76991" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="420" r_length="235" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76992" i_stop="77722" i_length="731">
            <donor d_prob="0.952" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77723" g_stop="77788" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="486" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77789" i_stop="78366" i_length="578">
            <donor d_prob="0.176" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78367" g_stop="78412" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="532" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78413" i_stop="79622" i_length="1210">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79623" g_stop="79782" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="693" r_length="161" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E575658" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75106" e_stop="75247"/>
          <exon e_start="76622" e_stop="76664"/>
          <exon e_start="76757" e_stop="76991"/>
          <exon e_start="77723" e_stop="77788"/>
          <exon e_start="78367" e_stop="78412"/>
          <exon e_start="79623" e_stop="79782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACGTGGAAGACGATACGTTCGATGGCGAAATAGCAGAAAACCTAAAAATAAGGAAATTGAGAGCAAAAATCTGAAATTATAGTCCATTTCTATGGTCATGTCAATGTCCCTGCGACTTTGTTGCAGACCTTCAATTTCTGTAAGTTTATAATAATCTAACCAGCAGCAAATTTTATCTAATTGTTGATTTCGTTGATGTTTTTATGCTAAATTGCTGTAAGTTTTAGATTTATGAGATACATTTCTAGACGTATAGTGGGAAGTGTTTTCTCTCTCTTTTGTTTCTTCTTCCCTTTTTTGTTTTGTTTTGTTTTTGCTTTTGAAGTTTGATCTAATCATATGGCGCCTATGGGTTGGGTAGGCTTAGTGGTCAATGACGTAAGTTAAGTTGTAAGTATCATGAGGTTTGAAGTTCAATTCTCAATAGAAACAAAAACACTAGTTGATTTGGATCGAGGTATGTGGCATTTGTTGCTGGTGACAGGTGATAGGTATATGTGGAATTAGTCGAGGTGTAAAAGTTGGTCCAAGCAGTTCGGTTATAAGAAAAAAAGGTTATCATATGCGAGGACCAAATGACCCGTACATGTATCTTTTAGTTAGATAAAAATGGACTTGGTGCCAGTTCGCTTGCACTTTGACTAATATCAAGTGTATTTGCTACCTCACACCAGTAAATACCGAGTAAGTGCCCGTTTGGATTGACTTATTTTAGGTGCTTTTAAGCCAAAATAGCTTTTAATCAGTTTTGAAGTGTTTGGGTAAAGCTAAAATGACAGAAATAAGTTAAAAGTCAAACTCCAGAAAATCTTACTTATGACTTTTGGCTTATAATTCATAAGCCAAAAGCCAATCCAAACAGGCCCTAACACTATCCATCAAGCTGTCCTTACTCCTTACCTCGTATTTTTGCATCGGTTGTTGGTTAAACCTGACACCTTCCGATTCTCAACCTACTTCGTTGTCCATACTAGACCAGTATATTTATACAAGGGGATTCAAAAGAGTGCTAGAATATCACAACTGGAAATTGGAATTGTGAATTAAAGCAAATACTTGGTAGCTCTGTCTATCAAGGCTGTCCTTACTTAGTATTTTTGTTTCAGCTAGGTTTTATACATGACACCTCATATTCTCAACGTCCTTCATTGACCACTAGACTAATATATTTGTTCACGGGGATTCAAAGAAGTGCTAGAATATCACAATTAGAAATTGTAGCTGTGACTTAAAGCAAATTTTTGAACCTTTCTTTATTACTACGCTGGAATCTTCTGTTTATATTCAACAATTTACACAACAACTACCTCATATATATAACAAAAGATAGTTCATTTTTACTCTATTTGGACAGTATGATTTACAGTGAAGGGGATTCAATTGAACCCCTTATCTTTACTTAGCTCCAAAGTCCAAACCTTTTCTTTTGGATATTAGAGTGATGGTACCTATAATATAACATTTTTGGTGGTGTGGATAAATTATAATGATAACATGCGAATTGAATGGGCAGGGTTTCAAGAATAAAAGAGATTTGTTGGGCTTAGAATTGGCAGGTAAGTCTTTGTTCATGAAAACCAAGTTCTTAATGTATGAACTTATTAGATGGCTCTGGCTCTGAGCAGTTTTTTTTCTTTTGTGTTTACAGCTTATCAATCAAGTAAGACAATGGGGAAATGGTTAAGTGGAGTGAAGAAGTTCATTCCCTTTGAGGGATATGTTAAGTCTGTGAAAACGGCAGCACGAATATCATTTCCAAAGATCTCAGCAGACTGTCAAGATAAAGAGCCTTCAAATTTTTTGAGTCACAAGAAGATGGTTCCTTATTCGAACCCCCCTAGCACGGAAGATGTGGATAGTTTGTATGAATTCTTTGATAGAAGGTAGGAATTGTGCTCCTTCTCTGTTTTGAATTAGAAAGGTCAAAAAAATACAAAACGGAAGTTTAACTAATTCTATTGTGCTGGAGAATACTTGGTTATACTTGGAGAAATTTGGTCGATTAGTTGTTTGCCGTTTTTCTTTTGTGCTGGTTGATTAATTGTGAAATGTGTTTTACTACAAAAGAGAGTGCAACTGAATTAGCATTTCCTAAGCAATAATCAAAGATAGAATCCCTTGAAACTTATGACATCATTTACATCAAATCCCTCAATTTATTTCTTGCATTTGGTAGATTTATAACAATAACAAGACCGTTGATTCTGACTACACTTCTCTTTACTGCTATTAAGTTCAATATTTTGAAGTCATAAAATTCAAAAAAAAAAAGAGGAAGAAAGATATTATTTCAAAGTCGTTTAGCTAAATAATATGTAGTTAAAAGTCCAAGTAGCTAAAGTTTTTGTGATATAATACACATAGTATAGATGTGTTTTTAATTATTATCTGAATTGACTACTACTATGTGATAGGCCTACATGCAATTACTTTCTATATTACAAACTAGAGCTTTAGTGGTGATTCATTTGCTGATTCTTTAATTGTAGGTCAAATTGGGTGTCCCTTTAACCACACTTCAGTTATAAAATACTACTTCCTTTTGTGTTTTCTTCTAATATCAACTACACTATGATATCAATTACTGACTGGTTCCTTTCCATTGTTTTTGTAGTACCAAGCTTGTTGTATTGACGGGAGCTGGCATGAGCACAGAGAGTGGAATTCCGGATTACAGAAGGTTGGTTTAAAACTAGATGAGCATGCTCAACGTTCTCAGCAGTTAACAGTTTGATCATTCTCTGAAGTTGATAATCTGAGTTACACTTCAAAAGGAAATACATTTTTACTGCAAAGGGAGGAAGACGTTGTCAATATTTAATTTCTTATCCTAGCTGAGTTACATTTCTATAAAGGAAGACACATTTCTTATTAAAATAAGAAGGCTGTCAACATTTAGTTTTACTGCTATTTGGTGCAGTTATAAACAAATTAAAACATCTGACTTTTTGGGTGTTGAGCATTTATATAAATTGTATGAAGTGAGGATTAAATCTGAAAGTGCGGCGAGATGTCCTGTTTGATTCAATGCTGGACGGTATGTGAAACCAAAGTTTCTTTGTAATTACTCTATTTTGAGCATTCCCTGCAGTTTTCGCCTTTTTCTATAGGGTGGTACGTCTGTGTTGTGTTTAAGAGTGTAGTTGGGGATTCAGTATTACAGCTTTGTGCTGCTTCTAGATTTTATTTTGGGCTGTATAAAGAAGTTAAGTGATATTTTTGGACAAATGGTAATGCTTTTCCCTCTTCTCTTGGCAGCCCAAACGGAGCTTATAGTACGGGTTTCAAACCAATTACCCATCAGGTGATTTGAAGGCATGTGCTATGATTCTGGGTTCCATTAAAGTGTCATTATTCATTTATAAATACCATTTCTTGCATATTTGAAAGAGGAAAAAGAATGTATTAGTCTACTACGGATTTAGTTCTGTTCATCTCTAGACCTATATATTTCTTGTAGACAATAAATCCTACATGAATTTAGTTGTGGTCATCTCCAGAAATATATACATGATACAACAACAGTCCCAAATAAATCAGGATTGACTTATGAATACTCATGATTCTCTATTTAAGCTCAAATCATGTCATCATCATACCCAAAAAGTACTTTAAAAAATAAGTTAGACCTATTCCCAACTAGTAGATCTCATCTATATGGATCTTTTCCTTCTGCTGTGTCCTATCTTTAGCTAAGTGTGCTTTGATTCCCAGAAATTGTAGGTCTTTCGAGACAACTTCCTTATTGTGATTCCTACCTCTTCCTCGTTAACACGTTCACTCACCATAGTTGCATTTGCACATCTATGAACAAGATGTACTGGTTGCAGCTGTAGGTCGATGCAGAGCATGACCAAACATCTCAGGCAACCTTCTCCCGTTTTATCCTCAATGCATACTACTTGCACTGTCTGGCAAATTTGATCATTTCTTAATCTTATCCATCCTTCGGGCTATCACATTATACCCTAGTAGCACTTCTCCATTTCAACCATTTAGTGCTAATTCCCGGAGTAATATCTAGATATGCAAACTGATTGTACTTTGGCACCACCACCCCGTGTAGTCTCACCTCAACTTCGCTCTTCTCATGCTGACTAAACTTGCATGCGTGTCAATTATTCCACTAGTTAGTTGCTACCTCTTGCCAGAACAGGTACCGACTCTATGTTGCTCAGATTCTCCATAAATGATGTTGCAGCCGTGTTGGATCCTTCAAAATGTACTACTTTTGAAGGATCCGACATGCACCCGTAGACATTTTTTGAAGATCCAAGGAACATAGGCCATGCCATAACTCTATCACTAATGCTTAGGCAGATAGGAAGTAATCACCTAGTGATTTTTCCTTTTTTAGGATTTGAATTGGTCTCCCAAAGTTACAATCCCGCTTCATTTTCTGCTAAACCACATTCTTAGGTGCTAGAAAAAGCTCCGTTTTCATTAAAATTTACAGAGTCAGCTTTTGCTTACTGCCTACATTCTAACTGTCTGATTTATATATCCAATTGTAGGAGTTTCTACGATCAATCAAGGCTCGAAGGCGTTATTGGGCACGGAGCTATGCTGGCTGGCGACGTTTCACTGCTGCTCAACCTAGTACAGGTCATATAGCTCTATCATCTCTTGAGAAAGCAGGCCATATAAGTTTTATGATTACACA-GAATGTGGACA</genome_strand>
        <mrna_strand>TCGACGTGGAAGACGATACGTTCGATGGCGGAACAGCAGAGAACCTAAAAATAAGGAAATTGAGAGCAAAAATCTGAAATTATAGTCCATTTCTATGGCCATGTCAATGTCACTGCGACTTTGTTGCAGACCTTCAATTTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCAAGAATAAAAGAGATTTGTTGGGCTTAGAATTGGCAG............................................................................................CTTATCAATCAAGTAATCCAATGGGGAAATGGTTTAGTGGAGTGAAGAAGTTCATCCCCTTTGAGGGATATGCTAAGTCTGTGAAAACAGCAGCACGAATATCATTTCCAAAGATCTCATCAGACTGTACAGATAAAGAACCTTCAAATTTTTTGAGTCACAAGAAGATGGTTCCTTATTCGGACCCGCCTAGCATGGAAGATGTGGAAAGTTTGTATGAATTCTTTGATAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAAGCTTGTTGTATTGACGGGAGCTGGCATGAGCACAGAGAGTGGAATTCCGGATTACAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAACGGAGCTTATAGTACGGGTTTCAAACCAATTACCCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTCTCCGATCAATCAAGGCTCGAAGGCGTTATTGGGCACGGAGCTATGCTGGATGGAGACGTTTCACTGCTGCTCAACCTAGTACAGGTCATATAGCTCTATCATCTCTTGAGAAAGCAGGCCATATAAGTTTTATGATCACACAGGAATGTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322153" ref_strand="+" ref_description="SGN-E322153 [cTOB-24-G2]">
      <seq>tttcaagaataaaagagatttgttgggcttagaattggcagcttatcaatcaagtaagacaatggggaaatggttaagtggagtgaagaagttcattccctttgagggatatgttaagtctgtgaaaacggcagcacgaatatcatttccaaagatctcagcagactgtcaagataaagagccttcaaattttttgagtcacaagaagatggttccttattcgaacccccctagcacggaagatgtggatagtttgtatgaattctttgatagaagtaccaagcttgttgtattgacgggagctggcatgagcacagagagtggaattccggattacagaagcccaaacggagcttatagtacgggtttcaaaccaattacccatcaggagtttctacgatcaatcaaggctcgaaggcgttattgggcacggagctatgctggctggcgacgtttcactgctgctcaacctagtacaggtcatatagctctatcatctcttgagaaagcaggccatataagttttatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="76324" stop="80067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76624" g_stop="76664" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76665" i_stop="76756" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76757" g_stop="76991" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="276" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76992" i_stop="77722" i_length="731">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77723" g_stop="77788" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="342" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77789" i_stop="78366" i_length="578">
            <donor d_prob="0.176" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78367" g_stop="78412" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="388" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78413" i_stop="79622" i_length="1210">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79623" g_stop="79767" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="533" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E322153" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76624" e_stop="76664"/>
          <exon e_start="76757" e_stop="76991"/>
          <exon e_start="77723" e_stop="77788"/>
          <exon e_start="78367" e_stop="78412"/>
          <exon e_start="79623" e_stop="79767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAGAATAAAAGAGATTTGTTGGGCTTAGAATTGGCAGGTAAGTCTTTGTTCATGAAAACCAAGTTCTTAATGTATGAACTTATTAGATGGCTCTGGCTCTGAGCAGTTTTTTTTCTTTTGTGTTTACAGCTTATCAATCAAGTAAGACAATGGGGAAATGGTTAAGTGGAGTGAAGAAGTTCATTCCCTTTGAGGGATATGTTAAGTCTGTGAAAACGGCAGCACGAATATCATTTCCAAAGATCTCAGCAGACTGTCAAGATAAAGAGCCTTCAAATTTTTTGAGTCACAAGAAGATGGTTCCTTATTCGAACCCCCCTAGCACGGAAGATGTGGATAGTTTGTATGAATTCTTTGATAGAAGGTAGGAATTGTGCTCCTTCTCTGTTTTGAATTAGAAAGGTCAAAAAAATACAAAACGGAAGTTTAACTAATTCTATTGTGCTGGAGAATACTTGGTTATACTTGGAGAAATTTGGTCGATTAGTTGTTTGCCGTTTTTCTTTTGTGCTGGTTGATTAATTGTGAAATGTGTTTTACTACAAAAGAGAGTGCAACTGAATTAGCATTTCCTAAGCAATAATCAAAGATAGAATCCCTTGAAACTTATGACATCATTTACATCAAATCCCTCAATTTATTTCTTGCATTTGGTAGATTTATAACAATAACAAGACCGTTGATTCTGACTACACTTCTCTTTACTGCTATTAAGTTCAATATTTTGAAGTCATAAAATTCAAAAAAAAAAAGAGGAAGAAAGATATTATTTCAAAGTCGTTTAGCTAAATAATATGTAGTTAAAAGTCCAAGTAGCTAAAGTTTTTGTGATATAATACACATAGTATAGATGTGTTTTTAATTATTATCTGAATTGACTACTACTATGTGATAGGCCTACATGCAATTACTTTCTATATTACAAACTAGAGCTTTAGTGGTGATTCATTTGCTGATTCTTTAATTGTAGGTCAAATTGGGTGTCCCTTTAACCACACTTCAGTTATAAAATACTACTTCCTTTTGTGTTTTCTTCTAATATCAACTACACTATGATATCAATTACTGACTGGTTCCTTTCCATTGTTTTTGTAGTACCAAGCTTGTTGTATTGACGGGAGCTGGCATGAGCACAGAGAGTGGAATTCCGGATTACAGAAGGTTGGTTTAAAACTAGATGAGCATGCTCAACGTTCTCAGCAGTTAACAGTTTGATCATTCTCTGAAGTTGATAATCTGAGTTACACTTCAAAAGGAAATACATTTTTACTGCAAAGGGAGGAAGACGTTGTCAATATTTAATTTCTTATCCTAGCTGAGTTACATTTCTATAAAGGAAGACACATTTCTTATTAAAATAAGAAGGCTGTCAACATTTAGTTTTACTGCTATTTGGTGCAGTTATAAACAAATTAAAACATCTGACTTTTTGGGTGTTGAGCATTTATATAAATTGTATGAAGTGAGGATTAAATCTGAAAGTGCGGCGAGATGTCCTGTTTGATTCAATGCTGGACGGTATGTGAAACCAAAGTTTCTTTGTAATTACTCTATTTTGAGCATTCCCTGCAGTTTTCGCCTTTTTCTATAGGGTGGTACGTCTGTGTTGTGTTTAAGAGTGTAGTTGGGGATTCAGTATTACAGCTTTGTGCTGCTTCTAGATTTTATTTTGGGCTGTATAAAGAAGTTAAGTGATATTTTTGGACAAATGGTAATGCTTTTCCCTCTTCTCTTGGCAGCCCAAACGGAGCTTATAGTACGGGTTTCAAACCAATTACCCATCAGGTGATTTGAAGGCATGTGCTATGATTCTGGGTTCCATTAAAGTGTCATTATTCATTTATAAATACCATTTCTTGCATATTTGAAAGAGGAAAAAGAATGTATTAGTCTACTACGGATTTAGTTCTGTTCATCTCTAGACCTATATATTTCTTGTAGACAATAAATCCTACATGAATTTAGTTGTGGTCATCTCCAGAAATATATACATGATACAACAACAGTCCCAAATAAATCAGGATTGACTTATGAATACTCATGATTCTCTATTTAAGCTCAAATCATGTCATCATCATACCCAAAAAGTACTTTAAAAAATAAGTTAGACCTATTCCCAACTAGTAGATCTCATCTATATGGATCTTTTCCTTCTGCTGTGTCCTATCTTTAGCTAAGTGTGCTTTGATTCCCAGAAATTGTAGGTCTTTCGAGACAACTTCCTTATTGTGATTCCTACCTCTTCCTCGTTAACACGTTCACTCACCATAGTTGCATTTGCACATCTATGAACAAGATGTACTGGTTGCAGCTGTAGGTCGATGCAGAGCATGACCAAACATCTCAGGCAACCTTCTCCCGTTTTATCCTCAATGCATACTACTTGCACTGTCTGGCAAATTTGATCATTTCTTAATCTTATCCATCCTTCGGGCTATCACATTATACCCTAGTAGCACTTCTCCATTTCAACCATTTAGTGCTAATTCCCGGAGTAATATCTAGATATGCAAACTGATTGTACTTTGGCACCACCACCCCGTGTAGTCTCACCTCAACTTCGCTCTTCTCATGCTGACTAAACTTGCATGCGTGTCAATTATTCCACTAGTTAGTTGCTACCTCTTGCCAGAACAGGTACCGACTCTATGTTGCTCAGATTCTCCATAAATGATGTTGCAGCCGTGTTGGATCCTTCAAAATGTACTACTTTTGAAGGATCCGACATGCACCCGTAGACATTTTTTGAAGATCCAAGGAACATAGGCCATGCCATAACTCTATCACTAATGCTTAGGCAGATAGGAAGTAATCACCTAGTGATTTTTCCTTTTTTAGGATTTGAATTGGTCTCCCAAAGTTACAATCCCGCTTCATTTTCTGCTAAACCACATTCTTAGGTGCTAGAAAAAGCTCCGTTTTCATTAAAATTTACAGAGTCAGCTTTTGCTTACTGCCTACATTCTAACTGTCTGATTTATATATCCAATTGTAGGAGTTTCTACGATCAATCAAGGCTCGAAGGCGTTATTGGGCACGGAGCTATGCTGGCTGGCGACGTTTCACTGCTGCTCAACCTAGTACAGGTCATATAGCTCTATCATCTCTTGAGAAAGCAGGCCATATAAGTTTTATGATTA</genome_strand>
        <mrna_strand>TTTCAAGAATAAAAGAGATTTGTTGGGCTTAGAATTGGCAG............................................................................................CTTATCAATCAAGTAAGACAATGGGGAAATGGTTAAGTGGAGTGAAGAAGTTCATTCCCTTTGAGGGATATGTTAAGTCTGTGAAAACGGCAGCACGAATATCATTTCCAAAGATCTCAGCAGACTGTCAAGATAAAGAGCCTTCAAATTTTTTGAGTCACAAGAAGATGGTTCCTTATTCGAACCCCCCTAGCACGGAAGATGTGGATAGTTTGTATGAATTCTTTGATAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAAGCTTGTTGTATTGACGGGAGCTGGCATGAGCACAGAGAGTGGAATTCCGGATTACAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAACGGAGCTTATAGTACGGGTTTCAAACCAATTACCCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTCTACGATCAATCAAGGCTCGAAGGCGTTATTGGGCACGGAGCTATGCTGGCTGGCGACGTTTCACTGCTGCTCAACCTAGTACAGGTCATATAGCTCTATCATCTCTTGAGAAAGCAGGCCATATAAGTTTTATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341821" ref_strand="+" ref_description="SGN-E341821 [cTOF-9-B17]">
      <seq>aagtaccaagcttgttgtattgacgggagctggcatgagcacagagagtggaattccggattacagaagcccaaacggagcttatagtacgggtttcaaaccaattacccatcaggtgatttgaaggagtttctacgatcaatcaaggctcgaaggcgttattgggcacggagctatgctggctggcgacgtttcactgctgctcaacctagtacaggtcatatagctctatcatctcttgagaaagcaggccatataagttttatgattacacagaatgtggacaggctgcatcaccgagctggaagcaatcctcttgaattgcatgggactgtctacattgttgcctgtacaaattgtggtttttctctacctcgagatctatttcaagatcaagtgaaggctcataatcccaagtgggcagaagctattgaaaatttggactatgacagtcgatcagacaagagttttggaatgaaacaaaggcctgatggggatattgagattgatgagaagttctgggaagaggatttctacattcctgaatgtcagagctgccaaggagttctgaaacctgatgttgtcttctttggggataatgtccccaaatctagggcagatgctgctatggaagctgcaaagggatgtgatgccttccttgtacttggttcatctttgatgaccatgtccgccttccggcttatcaagctgcacgtgaggcaggtgctgctactgcaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="77421" stop="82579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77720" g_stop="77788" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77789" i_stop="78366" i_length="578">
            <donor d_prob="0.176" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78367" g_stop="78423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="126" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78424" i_stop="79622" i_length="1199">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79623" g_stop="79783" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="287" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79784" i_stop="79858" i_length="75">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79859" g_stop="79988" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="417" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79989" i_stop="80835" i_length="847">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80836" g_stop="80997" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="579" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80998" i_stop="81733" i_length="736">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81734" g_stop="81861" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="706" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81862" i_stop="82243" i_length="382">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.857" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82244" g_stop="82279" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="742" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E341821" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77720" e_stop="77788"/>
          <exon e_start="78367" e_stop="78423"/>
          <exon e_start="79623" e_stop="79783"/>
          <exon e_start="79859" e_stop="79988"/>
          <exon e_start="80836" e_stop="80997"/>
          <exon e_start="81734" e_stop="81861"/>
          <exon e_start="82244" e_stop="82279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTACCAAGCTTGTTGTATTGACGGGAGCTGGCATGAGCACAGAGAGTGGAATTCCGGATTACAGAAGGTTGGTTTAAAACTAGATGAGCATGCTCAACGTTCTCAGCAGTTAACAGTTTGATCATTCTCTGAAGTTGATAATCTGAGTTACACTTCAAAAGGAAATACATTTTTACTGCAAAGGGAGGAAGACGTTGTCAATATTTAATTTCTTATCCTAGCTGAGTTACATTTCTATAAAGGAAGACACATTTCTTATTAAAATAAGAAGGCTGTCAACATTTAGTTTTACTGCTATTTGGTGCAGTTATAAACAAATTAAAACATCTGACTTTTTGGGTGTTGAGCATTTATATAAATTGTATGAAGTGAGGATTAAATCTGAAAGTGCGGCGAGATGTCCTGTTTGATTCAATGCTGGACGGTATGTGAAACCAAAGTTTCTTTGTAATTACTCTATTTTGAGCATTCCCTGCAGTTTTCGCCTTTTTCTATAGGGTGGTACGTCTGTGTTGTGTTTAAGAGTGTAGTTGGGGATTCAGTATTACAGCTTTGTGCTGCTTCTAGATTTTATTTTGGGCTGTATAAAGAAGTTAAGTGATATTTTTGGACAAATGGTAATGCTTTTCCCTCTTCTCTTGGCAGCCCAAACGGAGCTTATAGTACGGGTTTCAAACCAATTACCCATCAGGTGATTTGAAGGCATGTGCTATGATTCTGGGTTCCATTAAAGTGTCATTATTCATTTATAAATACCATTTCTTGCATATTTGAAAGAGGAAAAAGAATGTATTAGTCTACTACGGATTTAGTTCTGTTCATCTCTAGACCTATATATTTCTTGTAGACAATAAATCCTACATGAATTTAGTTGTGGTCATCTCCAGAAATATATACATGATACAACAACAGTCCCAAATAAATCAGGATTGACTTATGAATACTCATGATTCTCTATTTAAGCTCAAATCATGTCATCATCATACCCAAAAAGTACTTTAAAAAATAAGTTAGACCTATTCCCAACTAGTAGATCTCATCTATATGGATCTTTTCCTTCTGCTGTGTCCTATCTTTAGCTAAGTGTGCTTTGATTCCCAGAAATTGTAGGTCTTTCGAGACAACTTCCTTATTGTGATTCCTACCTCTTCCTCGTTAACACGTTCACTCACCATAGTTGCATTTGCACATCTATGAACAAGATGTACTGGTTGCAGCTGTAGGTCGATGCAGAGCATGACCAAACATCTCAGGCAACCTTCTCCCGTTTTATCCTCAATGCATACTACTTGCACTGTCTGGCAAATTTGATCATTTCTTAATCTTATCCATCCTTCGGGCTATCACATTATACCCTAGTAGCACTTCTCCATTTCAACCATTTAGTGCTAATTCCCGGAGTAATATCTAGATATGCAAACTGATTGTACTTTGGCACCACCACCCCGTGTAGTCTCACCTCAACTTCGCTCTTCTCATGCTGACTAAACTTGCATGCGTGTCAATTATTCCACTAGTTAGTTGCTACCTCTTGCCAGAACAGGTACCGACTCTATGTTGCTCAGATTCTCCATAAATGATGTTGCAGCCGTGTTGGATCCTTCAAAATGTACTACTTTTGAAGGATCCGACATGCACCCGTAGACATTTTTTGAAGATCCAAGGAACATAGGCCATGCCATAACTCTATCACTAATGCTTAGGCAGATAGGAAGTAATCACCTAGTGATTTTTCCTTTTTTAGGATTTGAATTGGTCTCCCAAAGTTACAATCCCGCTTCATTTTCTGCTAAACCACATTCTTAGGTGCTAGAAAAAGCTCCGTTTTCATTAAAATTTACAGAGTCAGCTTTTGCTTACTGCCTACATTCTAACTGTCTGATTTATATATCCAATTGTAGGAGTTTCTACGATCAATCAAGGCTCGAAGGCGTTATTGGGCACGGAGCTATGCTGGCTGGCGACGTTTCACTGCTGCTCAACCTAGTACAGGTCATATAGCTCTATCATCTCTTGAGAAAGCAGGCCATATAAGTTTTATGATTACACAGAATGTGGACAGGTAGTTGGCTCATCTTTTCATTTCTTCGTTGATTTTATGAGCCTTTTGACACTAATTTTATACTCTTCCTCTCAGGCTGCATCACCGAGCTGGAAGCAATCCTCTTGAATTGCATGGGACTGTCTACATTGTTGCCTGTACAAATTGTGGTTTTTCTCTACCTCGAGATCTATTTCAAGATCAAGTGAAGGCTCATAATCCCAAGGTTATCTTTATTCAGTTATTCTGTTAATTGAGTTTGAAATCACTGCCTAATTATTGATTTGAGTTATGTTGATTTGACTTCATGAAAGATGACATAGAAATCTATTTCAGCACTGTTCCACAAGGCACTAGTCTATATGTATGTCCAAGTCCTATAGAACTATTAACACCGACGATGCTTTCCCTATACATGTCTAGCTATAAGAGGAGGGACATTTTGGTGCATAGAATGTTACTGATTCCATTGTCACCTCTATTTACCACAAAAGGATTTCATTGTCACACAACCATCTGCCTTACCCTCGGGCCTTGACACATCAGTTCCTCCCCTACCCCAAACCTTCCTTCTTTGGCCTGCAATCCTGTACCTGTTACAGGCTTACAGCAATTGCTTTTCCTTGTCATCCATCATCTCATCTTAAAGAGTTCTGTATCTACATACAACTGTGTTACCTTGTTTATGCAGAAAACTGTCATTCATTGATATTGGACTGCAATAAGGGTCTATTCAGTTTGGATGATAACACAGCATATGTTAAGATTTGGATTAACAAATATTAAGTACTAAATTAGCTGCCTAACTACCATGTTCAGTTATGACATCATATATGTCTTCTTGTGTATAGCAAGCATTGGTTTTCGATGGTTTATTTGGCAACATTATTAGAATTTAACAGCTAGCCCTTGATTATGGTGTATGAGATATAATCTAAGGGGTATTACAATAGCCAACCCAAAATCTGTAAACTGGAATAACAACAAATCATGTTCTCTTCTTGATCAACCTAATGTATTCACTGTTTTGTTCTGTTGGCATAAACTGAACTGGAAATATTATAGTACTGCAGTGGGCAGAAGCTATTGAAAATTTGGACTATGACAGTCGATCAGACAAGAGTTTTGGAATGAAACAAAGGCCTGATGGGGATATTGAGATTGATGAGAAGTTCTGGGAAGAGGATTTCTACATTCCTGAATGTCAGAGCTGCCAAGGAGTTCTGAAACCTGATGTAAGTGATTTTTAATTTATCAGATGAACTAGTTATATAAACTTGGAGCAGCTTCTCTTTTCTCTTGCTTTATGTTTTTTCATTTCCTAGAGGTTAAAATTGGCCTAGGAAGAATTGAGTAAGATGATTCCTTTGTTATCACGAATATGTCCAAGAGTAATCTTGAATTGAAGAACGAGCCTTTCGCCGGGGTGAATAAGAATAGCCAATAGGTACAGATGACTTTCAAATTTCTGCCATGTGCCATAATTATACACATAATAAGTCTGCTGATTTATAATGAAAATTGTATGGACTTATTACATATATCTATTCTTGCTCCGTTCTAATTATTGCTCCGGATCTAGAAAGAAGGTTGGATCTTGCAATGCAAAACCATTGGGAACTTATTTTCGATTTCGCTGTAGGATATCAAAACTCTATACGTTCTATGTTTTTTTTAATAGTTAGTTCAAAGTTTATGCTATTTATTACAGTACCTAGTCAGTGGTATACTTTTAACTTCTAAAAGTTCATTAAAAAGAAAAAAGACACAAATTCACCTTTACTAGTAATTTTATATAATGACTCCACGAGGTAGTGGTAAGGTCTGCGTACACTCTACCTCTCCAGATCCCACTTAGTGGGTATTACATTGGGTATGTTGTTGTATTCGATCAATCATTGTTCCTCTGAATTTTAGATCATATAGACAGTAGTGTACTGGTATAAGTCACTAAAATATGGTACATTACAGGTTGTCTTCTTTGGGGATAATGTCCCCAAATCTAGGGCAGATGCTGCTATGGAAGCTGCAAAGGGATGTGATGCCTTCCTTGTACTTGGTTCATCTTTGATGACCATGTCCGCCTTCCGGCTTATCAAGTGAGAATTTGCTTCTCTCCCATTTTAATCAAAAGAAAATCTGGTCTACTTGGTTACTCTTAACTTGTTTGCTCATTCGGTTCTTGTCTAAGTGCATCATTGATGAATTGGTCTTATATCAGCATAGGATTTTTTTCACAAGGATTGCAATTGCATGACCCGAGATTTCATTTCTGAGAGTGGTCCCTTCTGATTCACTTACTCTTTCTCCGAAAATAGTTCCAGATGGTTCTGGAAACGTAACATTACTTCTCTCTTTGCATATACCTGTTAGATTATCACATCATAATTTCTTGGTTTCCTTCTTTTTGTTGGTTTTTATTTCCTTCTCTCCCTTTTGGATAACTTATATCAACAACATGAGAATAAATCCTTGCAACAGAGCTGCACGTGAGGCAGGTGCTGCTACTGCAATTAT</genome_strand>
        <mrna_strand>AAGTACCAAGCTTGTTGTATTGACGGGAGCTGGCATGAGCACAGAGAGTGGAATTCCGGATTACAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAACGGAGCTTATAGTACGGGTTTCAAACCAATTACCCATCAGGTGATTTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTCTACGATCAATCAAGGCTCGAAGGCGTTATTGGGCACGGAGCTATGCTGGCTGGCGACGTTTCACTGCTGCTCAACCTAGTACAGGTCATATAGCTCTATCATCTCTTGAGAAAGCAGGCCATATAAGTTTTATGATTACACAGAATGTGGACAG...........................................................................GCTGCATCACCGAGCTGGAAGCAATCCTCTTGAATTGCATGGGACTGTCTACATTGTTGCCTGTACAAATTGTGGTTTTTCTCTACCTCGAGATCTATTTCAAGATCAAGTGAAGGCTCATAATCCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCAGAAGCTATTGAAAATTTGGACTATGACAGTCGATCAGACAAGAGTTTTGGAATGAAACAAAGGCCTGATGGGGATATTGAGATTGATGAGAAGTTCTGGGAAGAGGATTTCTACATTCCTGAATGTCAGAGCTGCCAAGGAGTTCTGAAACCTGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCTTCTTTGGGGATAATGTCCCCAAATCTAGGGCAGATGCTGCTATGGAAGCTGCAAAGGGATGTGATGCCTTCCTTGTACTTGGTTCATCTTTGATGACCATGTCCGCCTTCCGGCTTATC-A..............................................................................................................................................................................................................................................................................................................................................................................................AGCTGCACGTGAGGCAGGTGCTGCTACTGCAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226427" ref_strand="+" ref_description="SGN-E226427 [cLEL-26-M18](-)">
      <seq>gcagatgctgctatggaagctgcaaagggatgtgatgccttccttgtacttggttcatctttgatgaccatgtccgccttccggcttatcaaagctgcacgtgaggcaggtgctgctactgcaattataaatattggtgctacacgagctgacgatattgtacctttgaaaattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="81470" stop="82628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81770" g_stop="81861" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81862" i_stop="82243" i_length="382">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82244" g_stop="82328" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="177" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E226427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81770" e_stop="81861"/>
          <exon e_start="82244" e_stop="82328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATGCTGCTATGGAAGCTGCAAAGGGATGTGATGCCTTCCTTGTACTTGGTTCATCTTTGATGACCATGTCCGCCTTCCGGCTTATCAAGTGAGAATTTGCTTCTCTCCCATTTTAATCAAAAGAAAATCTGGTCTACTTGGTTACTCTTAACTTGTTTGCTCATTCGGTTCTTGTCTAAGTGCATCATTGATGAATTGGTCTTATATCAGCATAGGATTTTTTTCACAAGGATTGCAATTGCATGACCCGAGATTTCATTTCTGAGAGTGGTCCCTTCTGATTCACTTACTCTTTCTCCGAAAATAGTTCCAGATGGTTCTGGAAACGTAACATTACTTCTCTCTTTGCATATACCTGTTAGATTATCACATCATAATTTCTTGGTTTCCTTCTTTTTGTTGGTTTTTATTTCCTTCTCTCCCTTTTGGATAACTTATATCAACAACATGAGAATAAATCCTTGCAACAGAGCTGCACGTGAGGCAGGTGCTGCTACTGCAATTATAAATATTGGTGCTACACGAGCTGACGATATTGTACCTTTGAAAATTAGT</genome_strand>
        <mrna_strand>GCAGATGCTGCTATGGAAGCTGCAAAGGGATGTGATGCCTTCCTTGTACTTGGTTCATCTTTGATGACCATGTCCGCCTTCCGGCTTATCAA..............................................................................................................................................................................................................................................................................................................................................................................................AGCTGCACGTGAGGCAGGTGCTGCTACTGCAATTATAAATATTGGTGCTACACGAGCTGACGATATTGTACCTTTGAAAATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226596" ref_strand="+" ref_description="SGN-E226596 [cLEL-26-M18](-)">
      <seq>gcagatgctgctatggaagctgcaaagggatgtgatgccttccttgtacttggttcatctttgatgaccatgtccgccttccggcttatcaaagctgcacgtgaggcaggtgctgctactgcaattataaatattggtgctacacgagctgacgatattgtacctttgaaaattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="81470" stop="82628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81770" g_stop="81861" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81862" i_stop="82243" i_length="382">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82244" g_stop="82328" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="177" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E226596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81770" e_stop="81861"/>
          <exon e_start="82244" e_stop="82328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATGCTGCTATGGAAGCTGCAAAGGGATGTGATGCCTTCCTTGTACTTGGTTCATCTTTGATGACCATGTCCGCCTTCCGGCTTATCAAGTGAGAATTTGCTTCTCTCCCATTTTAATCAAAAGAAAATCTGGTCTACTTGGTTACTCTTAACTTGTTTGCTCATTCGGTTCTTGTCTAAGTGCATCATTGATGAATTGGTCTTATATCAGCATAGGATTTTTTTCACAAGGATTGCAATTGCATGACCCGAGATTTCATTTCTGAGAGTGGTCCCTTCTGATTCACTTACTCTTTCTCCGAAAATAGTTCCAGATGGTTCTGGAAACGTAACATTACTTCTCTCTTTGCATATACCTGTTAGATTATCACATCATAATTTCTTGGTTTCCTTCTTTTTGTTGGTTTTTATTTCCTTCTCTCCCTTTTGGATAACTTATATCAACAACATGAGAATAAATCCTTGCAACAGAGCTGCACGTGAGGCAGGTGCTGCTACTGCAATTATAAATATTGGTGCTACACGAGCTGACGATATTGTACCTTTGAAAATTAGT</genome_strand>
        <mrna_strand>GCAGATGCTGCTATGGAAGCTGCAAAGGGATGTGATGCCTTCCTTGTACTTGGTTCATCTTTGATGACCATGTCCGCCTTCCGGCTTATCAA..............................................................................................................................................................................................................................................................................................................................................................................................AGCTGCACGTGAGGCAGGTGCTGCTACTGCAATTATAAATATTGGTGCTACACGAGCTGACGATATTGTACCTTTGAAAATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215902" ref_strand="+" ref_description="SGN-E215902 [cLEL-15-F12](-)">
      <seq>caaagggatgtgatgccttccttgtacttggttcatctttgatgaccatgtccgccttccggcttatcaaagctgcacgtgaggcaggtgctgctactgcaattataaatattggtgctacacgagctgacgatattgtacctttgaaaattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="81492" stop="82628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81792" g_stop="81861" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81862" i_stop="82243" i_length="382">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82244" g_stop="82328" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="155" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E215902" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>155</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81792" e_stop="81861"/>
          <exon e_start="82244" e_stop="82328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGGATGTGATGCCTTCCTTGTACTTGGTTCATCTTTGATGACCATGTCCGCCTTCCGGCTTATCAAGTGAGAATTTGCTTCTCTCCCATTTTAATCAAAAGAAAATCTGGTCTACTTGGTTACTCTTAACTTGTTTGCTCATTCGGTTCTTGTCTAAGTGCATCATTGATGAATTGGTCTTATATCAGCATAGGATTTTTTTCACAAGGATTGCAATTGCATGACCCGAGATTTCATTTCTGAGAGTGGTCCCTTCTGATTCACTTACTCTTTCTCCGAAAATAGTTCCAGATGGTTCTGGAAACGTAACATTACTTCTCTCTTTGCATATACCTGTTAGATTATCACATCATAATTTCTTGGTTTCCTTCTTTTTGTTGGTTTTTATTTCCTTCTCTCCCTTTTGGATAACTTATATCAACAACATGAGAATAAATCCTTGCAACAGAGCTGCACGTGAGGCAGGTGCTGCTACTGCAATTATAAATATTGGTGCTACACGAGCTGACGATATTGTACCTTTGAAAATTAGT</genome_strand>
        <mrna_strand>CAAAGGGATGTGATGCCTTCCTTGTACTTGGTTCATCTTTGATGACCATGTCCGCCTTCCGGCTTATCAA..............................................................................................................................................................................................................................................................................................................................................................................................AGCTGCACGTGAGGCAGGTGCTGCTACTGCAATTATAAATATTGGTGCTACACGAGCTGACGATATTGTACCTTTGAAAATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309612" ref_strand="+" ref_description="SGN-E309612 [cLEY-26-B19]">
      <seq>cacgtgaggcaggtgctgctactgcaattataaatattggtgctacacgagctgacgatattgtacctttgaaaattagtgctcgagttggagagatacttccaagattgctcaatgttggatcattaagtatccctgctccctagttcctgattcagagaactgttaattaatagcatcccagattctttttcatcagttgctgcaaatggattgtacacttggtcggaacgtgctagttcgccctgcatctcacgtgtggtaaattcactaaatttatctcgacgttgtttgtaattcttaaaaatgaacttctcaactaccacacacactatttatgtgcgcgtttgtattgtcacacaactcgactactttgaatttctgatttagtgagttgaagctgaaatggtgcgaaaatacacagaatattgcttggaaatgatgaattttagtatggccttttgcttaaagatttacattatgcttgcataaaanaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="81949" stop="83177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82249" g_stop="82343" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82344" i_stop="82468" i_length="125">
            <donor d_prob="0.596" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82469" g_stop="82870" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="497" r_length="402" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="516"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E309612" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82249" e_stop="82343"/>
          <exon e_start="82469" e_stop="82870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTGAGGCAGGTGCTGCTACTGCAATTATAAATATTGGTGCTACACGAGCTGACGATATTGTACCTTTGAAAATTAGTGCTCGAGTTGGAGAGGTTAGTGCTTTGTATGGAACACCAGAAGTTCTAGTTTCCGTTATAGTCATCCTCGCATTCTATTTTTACAGCTTTTCTTGCTGCAACGTTCCTGGAACCTTAACTTATACAATTATATGATGCAGATACTTCCAAGATTGCTCAATGTTGGATCATTAAGTATCCCTGCTCCCTAGTTCCTGATTCAGAGAACTGTTAATTAATAGCATCCCAGATTCTTTTTCATCAGTTGCTGCAAATGGATTGTACACTTGGTCGGAACGTGCTAGTTCGCCCTGCATCTCACGTGTGGTAAATTCACTAAATTTATCTCGACGTTGTTTGTAATTCTTAAAAATGAACTTCTCAACTACCACACACACTATTTATGTGCGCGTTTGTATTGTCACACAACTCGACTACTTTGAATTTCTGATTTAGTGAGTTGAAGCTGAAATGGTGCGAAAATACACAGAATATTGCTTGGAAATGATGAATTTTAGTATGGCCTTTTGCTTAAAGATTTACATTATGCTTGCATAAAAAAA</genome_strand>
        <mrna_strand>CACGTGAGGCAGGTGCTGCTACTGCAATTATAAATATTGGTGCTACACGAGCTGACGATATTGTACCTTTGAAAATTAGTGCTCGAGTTGGAGAG.............................................................................................................................ATACTTCCAAGATTGCTCAATGTTGGATCATTAAGTATCCCTGCTCCCTAGTTCCTGATTCAGAGAACTGTTAATTAATAGCATCCCAGATTCTTTTTCATCAGTTGCTGCAAATGGATTGTACACTTGGTCGGAACGTGCTAGTTCGCCCTGCATCTCACGTGTGGTAAATTCACTAAATTTATCTCGACGTTGTTTGTAATTCTTAAAAATGAACTTCTCAACTACCACACACACTATTTATGTGCGCGTTTGTATTGTCACACAACTCGACTACTTTGAATTTCTGATTTAGTGAGTTGAAGCTGAAATGGTGCGAAAATACACAGAATATTGCTTGGAAATGATGAATTTTAGTATGGCCTTTTGCTTAAAGATTTACATTATGCTTGCATAAAANAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229564" ref_strand="+" ref_description="SGN-E229564 [cLEL-4-D6](-)">
      <seq>aactgttaattaatagcatcccagattctttttcatcagttgctgcaaatggattgtacacttggtggaaacgtgctagttcgccctgcatctcacgtgtggtaaattcactatcatttatctcggcgttgtttgtaattcttaaaaatgaacttctcaactaccacacacactatttatgtgtgcgtttgtattgtcacacaactcgactactttgaatttctgatttagtgagttgaagctgaaatggtgcgaaaatacacagaatattgcttggaaatgatgaattttagtatggccttttgcttaaagatttacattatgcttgcataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="82234" stop="83177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82534" g_stop="82870" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="339" polyA_stop="354"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E229564" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82534" e_stop="82870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTTAATTAATAGCATCCCAGATTCTTTTTCATCAGTTGCTGCAAATGGATTGTACACTTGGTCGGAACGTGCTAGTTCGCCCTGCATCTCACGTGTGGTAAATTCACTA-AATTTATCTCGACGTTGTTTGTAATTCTTAAAAATGAACTTCTCAACTACCACACACACTATTTATGTGCGCGTTTGTATTGTCACACAACTCGACTACTTTGAATTTCTGATTTAGTGAGTTGAAGCTGAAATGGTGCGAAAATACACAGAATATTGCTTGGAAATGATGAATTTTAGTATGGCCTTTTGCTTAAAGATTTACATTATGCTTGCATAAAAAAA</genome_strand>
        <mrna_strand>AACTGTTAATTAATAGCATCCCAGATTCTTTTTCATCAGTTGCTGCAAATGGATTGTACACTTGGTGGAAACGTGCTAGTTCGCCCTGCATCTCACGTGTGGTAAATTCACTATCATTTATCTCGGCGTTGTTTGTAATTCTTAAAAATGAACTTCTCAACTACCACACACACTATTTATGTGTGCGTTTGTATTGTCACACAACTCGACTACTTTGAATTTCTGATTTAGTGAGTTGAAGCTGAAATGGTGCGAAAATACACAGAATATTGCTTGGAAATGATGAATTTTAGTATGGCCTTTTGCTTAAAGATTTACATTATGCTTGCATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229454" ref_strand="+" ref_description="SGN-E229454 [cLEL-4-D6](-)">
      <seq>aattaaaagcatcccagattctttttcatcaggtgctgcaaatggattgtacacttggtcggaacgtgctagttcgccctgcatctcacgtgtggtaaattcactaaatttatctcgacgttgtttgtaattcttaaaaatgaacttctcaactaccacacacactatttatgtgcgcgtttgtattgtcacacaactcgactactttgaatttctgatttagtgagttgaagctgaaatggtgcgaaaatacacagaatattgcttggaaatgatgaattttagtatggccttttgcttaaagatttacattatgcttgcataaacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="82241" stop="83177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82541" g_stop="82870" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="331" polyA_stop="346"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E229454" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82541" e_stop="82870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAATAGCATCCCAGATTCTTTTTCATCAGTTGCTGCAAATGGATTGTACACTTGGTCGGAACGTGCTAGTTCGCCCTGCATCTCACGTGTGGTAAATTCACTAAATTTATCTCGACGTTGTTTGTAATTCTTAAAAATGAACTTCTCAACTACCACACACACTATTTATGTGCGCGTTTGTATTGTCACACAACTCGACTACTTTGAATTTCTGATTTAGTGAGTTGAAGCTGAAATGGTGCGAAAATACACAGAATATTGCTTGGAAATGATGAATTTTAGTATGGCCTTTTGCTTAAAGATTTACATTATGCTTGCATAAAAAAA</genome_strand>
        <mrna_strand>AATTAAAAGCATCCCAGATTCTTTTTCATCAGGTGCTGCAAATGGATTGTACACTTGGTCGGAACGTGCTAGTTCGCCCTGCATCTCACGTGTGGTAAATTCACTAAATTTATCTCGACGTTGTTTGTAATTCTTAAAAATGAACTTCTCAACTACCACACACACTATTTATGTGCGCGTTTGTATTGTCACACAACTCGACTACTTTGAATTTCTGATTTAGTGAGTTGAAGCTGAAATGGTGCGAAAATACACAGAATATTGCTTGGAAATGATGAATTTTAGTATGGCCTTTTGCTTAAAGATTTACATTATGCTTGCATAAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624174" ref_strand="+" ref_description="SGN-E624174 [GI|14485512]">
      <seq>ggtcaaacaactgaaactaacaaagcagcagcagcagcaacaaacagagaagacaacagaggaagataaacaaaggaaattaagagggagatttatcgaatcgaaagggaaagggaagttacgaagagtgagaatttgaaggaaatgaacaaaggagcaaccggaaatcagcaattggagttaccggcgggattcagattccatccgacagacgacgaattggtgcagcattatctctgcaggaaatgtgccggacagccaattgcagtatcaattataactgaaattgatctttacaagtttgatccatggcagttgcctgaaaaggctttgtacggtgaaaaggagtggtattttttctcaccaagggatagaaaatatcctaacggttcacggccgaaccgagcagcaggaaccggttattggaaggcaaccggagcagataaaccggtgggaaaacccaaaacattagggataaagaaggcacttgtgttttatgctggaaaagcacctagaggaataaaaaccaattggattatgcatgagtaccggctcgccaatgtggaccggtctgctggcaagaacaataacttgaggcttgatgattgggtattgtgtcgaatttacaacaagaaaggcacacttgagaagcattacaatgtggacaacaaggaaactgcaagctttggagaatttgatgaagaaataaaaccaaaaatattgcccacacaattagcacagatgccaccacggccccgatcgacaccgacaaacgactacttccatttcgaatcatcggagtcgatgactagaatgcacaccacaaactcgagctctggctcagagcatgtcttgtcgccatgtgacaaggaggttcagagcgcgcccaaatgggacgaagaccacagaaacacccttgattttcagctaaattatctggatggtttactaaatgaaccatttgaaacccaaatgcagcagcaaagttgcaactttgaccagttcaacaatttccaagacatgttcttttacatgcaaaagccttactaaaattgtataaattcattggatctaaattgattgtgatccatgacattttctttgttctttggtggtgtaggtcaacttttattaattagtttagaaaagtacaaaatgcaagtcaaatttggtgggctgtaatgagcctttgataagcatagccaaagagtcatatagaagggcttattaatgttattattgtaaggtacatgtaaaacaaatgaaaatttgttaatatcaagttatcattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="87741" stop="90286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88012" g_stop="88339" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88340" i_stop="88704" i_length="365">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88705" g_stop="88979" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="597" r_length="275" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88980" i_stop="89289" i_length="310">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89290" g_stop="89933" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="1235" r_length="638" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E624174" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>1247</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88012" e_stop="88339"/>
          <exon e_start="88705" e_stop="88979"/>
          <exon e_start="89290" e_stop="89933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAAAGAAACTGAAACTAACACAAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGAT-AA-GAGGAAAATTTA-TCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTGGTAATTTTTGACTCTTCCTCCAATTTTTCATAGCTTGCAAAGTCTAGGTCAAAAAAAAAATCGAAACAGATTAAGCTTCGCGTTTGATCACAGTTTTTGGATCTGTTCCGCCATGGAATTTGAAAATCAGATCAAGTTCCTTAAAACAAGTTTTTCGACTTATAGCATAGCAACACAACTTCAAATCTCAAAAATCACAATTTCAAAAACTCATAGATTTCAACTTCTATATTCAAACAGGAGCTAAATTTCGAATTTTAAAAAATTATCTTCAAATATCCGTAAAAGTTAATCTTCGAACATTTTTAAGTTCCTAAAACTGTTTGGTTCTTTTTCTGAACTTTATTTTTTGTTGGTAATTGCAGAGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGTACCGCCTCGCCAACGTGGACCGCTCTGCTGGCAAGAACAATAACTTGAGGGTAAGTCCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCC-TTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATT</genome_strand>
        <mrna_strand>GGTCAAACAA-CTGAAACT-A-ACAAAGC---AGCAGCAGCAGCAACAAAC--AGAGAAGACAACAGAGGAAGATAAACAAAGGAAATTAAGAGGGAGATTTATCGAATCGAAAGGGAAAGGGAAGTTACGAAGAGTGAGAATTT-GAAGGAAATGAACAAAGGAGCAACCGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCATTATCTCTGCAGGAAATGTGCCGGACAGCCAATTGCAGTATCAATTATAACTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTG.............................................................................................................................................................................................................................................................................................................................................................................AAAAGGCTTTGTACGGTGAAAAGGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCTAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCAGATAAACCGGTGGGAAAACCCAAAACATTAGGGATAAAGAAGGCACTTGTGTTTTATGCTGGAAAAGCACCTAGAGGAATAAAAACCAATTGGATTATGCATGAGTACCGGCTCGCCAATGTGGACCGGTCTGCTGGCAAGAACAATAACTTGAGG......................................................................................................................................................................................................................................................................................................................CTTGATGATTGGGTATTGTGTCGAATTTACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTGCAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACAGATGCCACCACGGCCCCGATCGACACCGACAAACGACTACTTCCATTTCGAATCATCGGAGTCGATGACTAGAATGCACACCACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAATTATCTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAAGTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCTTTTACATGCAAAAGCCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGATTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAAC-TTTTATTAATTAGTTTAGAAAAGTACAAAATGCAAGTCAAATTTGGTGGGCT---G---TAATGAGCCTTTGATAAGCATAGCCAAAGAGTCATATAGAAGGGCTTATTAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746249" ref_strand="+" ref_description="SGN-E746249 [GI|47104805]">
      <seq>ctgaaactaacacaaagcaggagcagaagcagcaacaaacagagagagaagaaaacagaggaagataagaggaaaatttatcgaatcgagagaaaaggggaagtaaagttgcgaagagtgagaatttcaaaggaaatgaacaaaggagcaaacggaaatcagcaattggagttaccggcgggattcagattccatccgacagacgacgaattggtgcagcactatctctgcaggaaatgcgccggacagtcgattgcagtatcaattatagctgaaattgatctttacaagtttgatccatggcagttgcctgagaaggctttgtacggtgaaaaagagtggtattttttctcaccaagggatagaaaatatccgaacggttcacggccgaaccgagcagcaggaaccggttattggaaggcaaccggagctgataaaccggtgggaaaacccaaaacgttagggataaagaaggcacttgtgttctatgccggaaaagcacctagaggtataaaaaccaattggattatgcacgagtaccgcctcgccaacgtggaccgctctgctggcaagaacaataacttgaggcttgatgattgggtattgtgtcgaatatacaacaagaaaggcacacttgagaagcattacaatgtggacaacaaggaaactacaagctttggagaatttgatgaagaaataaaaccgaaaatattgaccacacaattagcaccgatgccaccacggcctcgatcgacaccggcaaacgactactttcatttcgagtcatcagagtcgatgactagaatgcacacgacaaactcgagctctggctcagagcatgtcttgtcgccatgtgacaaggaggttcagagcgcgcccaaatgggacgaagaccacagaaacacccttgattttcagctaaactatttggatggtttactaaatgaaccatttgaaacccaaatgcagcagcaaatgtgcaactttgaccagttcaacaatttcgacatgttcctatacatgcaaaaaccttactaaaattgtataaattcattggatctaaattgagtgtgatccatgacattttctttgttctttggtggtgtagttcaactttttattaagtagtttagaaaagtacaaaatgctagtcaaatttggtgggctacagcacaaatgagccttgataagcatagccaaagagtcatatagaagggcttattattattgtaaggtacatgtaaaaacaaatgaaaatttgttaatatcaagttatcataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="87723" stop="90281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88023" g_stop="88339" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88340" i_stop="88704" i_length="365">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88705" g_stop="88979" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="588" r_length="275" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88980" i_stop="89289" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89290" g_stop="89979" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="1277" r_length="689" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1278" polyA_stop="1294"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E746249" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>1282</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88023" e_stop="88339"/>
          <exon e_start="88705" e_stop="88979"/>
          <exon e_start="89290" e_stop="89979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAACTAACACAAAGCAGGAGCAGGAGCAGCAACAAAC--AGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTGGTAATTTTTGACTCTTCCTCCAATTTTTCATAGCTTGCAAAGTCTAGGTCAAAAAAAAAATCGAAACAGATTAAGCTTCGCGTTTGATCACAGTTTTTGGATCTGTTCCGCCATGGAATTTGAAAATCAGATCAAGTTCCTTAAAACAAGTTTTTCGACTTATAGCATAGCAACACAACTTCAAATCTCAAAAATCACAATTTCAAAAACTCATAGATTTCAACTTCTATATTCAAACAGGAGCTAAATTTCGAATTTTAAAAAATTATCTTCAAATATCCGTAAAAGTTAATCTTCGAACATTTTTAAGTTCCTAAAACTGTTTGGTTCTTTTTCTGAACTTTATTTTTTGTTGGTAATTGCAGAGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGTACCGCCTCGCCAACGTGGACCGCTCTGCTGGCAAGAACAATAACTTGAGGGTAAGTCCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGT--ATGTAAAAACAAATGAAAATTTGTTAATATCAAGTTATC</genome_strand>
        <mrna_strand>CTGAAACTAACACAAAGCAGGAGCAGAAGCAGCAACAAACAGAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAA-TCG-A--GAGA-AAA-GGGGAAGTAAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCAGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTG.............................................................................................................................................................................................................................................................................................................................................................................AGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACGTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCTAGAGGTATAAAAACCAATTGGATTATGCACGAGTACCGCCTCGCCAACGTGGACCGCTCTGCTGGCAAGAACAATAACTTGAGG......................................................................................................................................................................................................................................................................................................................CTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCGAAAATATTGACCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCGGCAAACGACTACTTTCATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATGTGCAACTTTGACCAGTTCAACAATTT-C--GACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGTTCAACTTTTTATTAAGTAGTTTAGAAAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCATATAGAAGGGCTTATTATTATTGTAAGGTACATGTAAAAACAAATGAAAATTTGTTAATATCAAGTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376919" ref_strand="+" ref_description="SGN-E376919 [TUS-20-A1]">
      <seq>tgaaactaacacaaagcaggagcaggagcagcaacaaacagagagaagaaaacagaggaagataagaggaaaatttatcgaattcgaatcgagagaaaaggggaagtgaagttgcgaagagtgagaatttcaaaggaaatgaacaaaggagcaaacggaaatcagcaattggagttaccggcgggattcagattccatccgacagacgacgaattggtgcagcactatctctgcaggaaatgcgccggacagtcgattgctgtatcaattatagctgaaattgatctttacaagtttgatccatggcagttgcctgagaaggctttgtacggtgaaaaagagtggtattttttctcaccaagggatagaaaatatccgaacggttcacggccgaaccgagcagcaggaaccggttattggaaggcaaccggagctgataaaccggtgggaaaacccaaaaccttagggataaagaaggcacttgtgttctatgccggaaaagcacccagaggtataaaaacaaattggattatgcacgagtaccgcctcgccaacgtggaccgctctgctggcaagaacaataacttgaggcttgatgattgggtattgtgtcgaatatacaacaagaaaggcacacttgagaggcattacaatggggacaacaaggaaacttcaagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="87724" stop="89679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88024" g_stop="88339" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88340" i_stop="88704" i_length="365">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88705" g_stop="88979" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="591" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88980" i_stop="89289" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89290" g_stop="89380" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="682" r_length="91" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E376919" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88024" e_stop="88339"/>
          <exon e_start="88705" e_stop="88979"/>
          <exon e_start="89290" e_stop="89380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACTAACACAAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTGGTAATTTTTGACTCTTCCTCCAATTTTTCATAGCTTGCAAAGTCTAGGTCAAAAAAAAAATCGAAACAGATTAAGCTTCGCGTTTGATCACAGTTTTTGGATCTGTTCCGCCATGGAATTTGAAAATCAGATCAAGTTCCTTAAAACAAGTTTTTCGACTTATAGCATAGCAACACAACTTCAAATCTCAAAAATCACAATTTCAAAAACTCATAGATTTCAACTTCTATATTCAAACAGGAGCTAAATTTCGAATTTTAAAAAATTATCTTCAAATATCCGTAAAAGTTAATCTTCGAACATTTTTAAGTTCCTAAAACTGTTTGGTTCTTTTTCTGAACTTTATTTTTTGTTGGTAATTGCAGAGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGTACCGCCTCGCCAACGTGGACCGCTCTGCTGGCAAGAACAATAACTTGAGGGTAAGTCCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTG</genome_strand>
        <mrna_strand>TGAAACTAACACAAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTG.............................................................................................................................................................................................................................................................................................................................................................................AGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGTACCGCCTCGCCAACGTGGACCGCTCTGCTGGCAAGAACAATAACTTGAGG......................................................................................................................................................................................................................................................................................................................CTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAGGCATTACAATGGGGACAACAAGGAAACTTCAAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233058" ref_strand="+" ref_description="SGN-E233058 [cLED-6-E12]">
      <seq>tgaaactaacacaaagcaggagcaggagcagcaacaaacagagagaagaaaacagaggaagataagaggaaaatttatcgaattcgaatcgagagaaaaggggaagtgaagttgcgaagagtgagaatttcaaaggaaatgaacaaaggagcaaacggaaatcagcaattggagttaccggcgggattcagattccatccgacagacgacgaattggtgcagcactatctctgcaggaaatgcgccggacagtcgattgctgtatcaattatagctgaaattgatctttacaagtttgatccatggcagttgcctgagaaggctttgtacggtgaaaaagagtggtattttttctcaccaagggatagaaaatatccgaacggttcacggccgaaccgagcagcaggaaccggttattggaaggcaaccggagctgataaaccggtgggaaaacccaaaaccttaaggataaagaaggcacttgtgttctatgccggaaaagcacccagaggtataaaaacaaattggattatgcacgagtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="87724" stop="89232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88024" g_stop="88339" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88340" i_stop="88704" i_length="365">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88705" g_stop="88932" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="544" r_length="228" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E233058" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88024" e_stop="88339"/>
          <exon e_start="88705" e_stop="88932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACTAACACAAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTGGTAATTTTTGACTCTTCCTCCAATTTTTCATAGCTTGCAAAGTCTAGGTCAAAAAAAAAATCGAAACAGATTAAGCTTCGCGTTTGATCACAGTTTTTGGATCTGTTCCGCCATGGAATTTGAAAATCAGATCAAGTTCCTTAAAACAAGTTTTTCGACTTATAGCATAGCAACACAACTTCAAATCTCAAAAATCACAATTTCAAAAACTCATAGATTTCAACTTCTATATTCAAACAGGAGCTAAATTTCGAATTTTAAAAAATTATCTTCAAATATCCGTAAAAGTTAATCTTCGAACATTTTTAAGTTCCTAAAACTGTTTGGTTCTTTTTCTGAACTTTATTTTTTGTTGGTAATTGCAGAGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGTACC</genome_strand>
        <mrna_strand>TGAAACTAACACAAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTG.............................................................................................................................................................................................................................................................................................................................................................................AGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAAGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358920" ref_strand="+" ref_description="SGN-E358920 [cLHT-24-K8]">
      <seq>tgaaactaacacaaagcaggagcagaagcagcaacaaacagagagagaagaaaacagaggaagataagaggaaaatttatcgaatcgagagaaaaggggaagtaaagttgcgaagagtgagaatttcaaaggaaatgaacaaaggagcaaacggaaatcagcaattggagttaccggcgggattcagattccatccgacagacgacgaattggtgcagcactatctctgcaggaaatgcgccggacagtcgattgcagtatcaattatagctgaaattgatctttacaagtttgatccatggcagttgcctgagaaggctttgtacggtgaaaaagagtggtattttttctcaccaagggatagaaaatatccgaacggttcacggccgaaccgagcagcaggaaccggttattggaaggcaaccggagctgataaaccggtgggaaaacccaaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="87724" stop="89149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88024" g_stop="88339" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88340" i_stop="88704" i_length="365">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88705" g_stop="88850" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="458" r_length="146" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E358920" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88024" e_stop="88339"/>
          <exon e_start="88705" e_stop="88850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACTAACACAAAGCAGGAGCAGGAGCAGCAACAAAC--AGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTGGTAATTTTTGACTCTTCCTCCAATTTTTCATAGCTTGCAAAGTCTAGGTCAAAAAAAAAATCGAAACAGATTAAGCTTCGCGTTTGATCACAGTTTTTGGATCTGTTCCGCCATGGAATTTGAAAATCAGATCAAGTTCCTTAAAACAAGTTTTTCGACTTATAGCATAGCAACACAACTTCAAATCTCAAAAATCACAATTTCAAAAACTCATAGATTTCAACTTCTATATTCAAACAGGAGCTAAATTTCGAATTTTAAAAAATTATCTTCAAATATCCGTAAAAGTTAATCTTCGAACATTTTTAAGTTCCTAAAACTGTTTGGTTCTTTTTCTGAACTTTATTTTTTGTTGGTAATTGCAGAGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACC</genome_strand>
        <mrna_strand>TGAAACTAACACAAAGCAGGAGCAGAAGCAGCAACAAACAGAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAAT-CG-A--GAGA-AAA-GGGGAAGTAAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCAGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTG.............................................................................................................................................................................................................................................................................................................................................................................AGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747445" ref_strand="+" ref_description="SGN-E747445 [GI|40647396]">
      <seq>ggcacgagcaaagcaggagcaggagcagcaacaaacagagagaagaaaacagaggaagataagaggaaaatttatcgaattcgaatcgagagaaaaggggaagtgaagttgcgaagagtgagaatttcaaaggaaatgaacaaaggagcaaacggaaatcagcaattggagttaccggcgggattcagattccatccgacagacgacgaattggtgcagcactatctctgcaggaaatgcgccggacagtcgattgctgtatcaattatagctgaaattgatctttacaagtttgatccatggcagttgcctgagaaggctttgtacggtgaaaaagagtggtattttttctcaccaagggatagaaaatatccgaacggttcacggccgaaccgagcagcaggaaccggttattggaaggcaaccggagctgataaaccggtgggaaaacccaaaaccttagggataaagaaggcacttgtgttctatgccggaaaagcacccagaggtataaaaacaaattggattatgcacgagtaccgcctcgccaacgtggaccgctctgctggcaagaacaataacttgaggcttgatgattgggtattgtgtcgaatatacaacaagaaaggcacacttgagaagcattacaatgtggacaacaaggaaactacaagctttggagaatttgatgaagaaataaaaccaaaaatattgcccacacaattagcaccgatgccaccacggcctcgatcgacaccagcaaacgactacttttatttcgagtcatcagagtcgatgactagaatgcacacgacaaactcgagctctggctcagagcatgtcttgtcgccatgtgacaaggaggttcagagcgcgcccaaatgggacgaagaccacagaaacacccttgattttcagctaaactatttggatggtttactaaatgaaccatttgaaacccaaatgcagcagcaaatttgcaactttgaccagttcaacaatttccaagacatgttcctatacatgcaaaaaccttactaaaattgtataaattcattggatctaaattgagtgtgatccatgacattttctttgttctttggtggtgtaggtcaactttttattaagtagtttagagaagtacaaaatgctagtcaaatttggtgggctacagcacaaatgagccttgataagcatagccaaagagtcgtatagaagggcttattattattgtaaggtatgtaaaaacaaatgaaaatttgttaatatcaagttatcattcttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="87732" stop="90289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88025" g_stop="88339" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88340" i_stop="88704" i_length="365">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88705" g_stop="88979" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="588" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88980" i_stop="89289" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89290" g_stop="89988" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="1287" r_length="699" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1288" polyA_stop="1304"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E747445" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1289</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88025" e_stop="88339"/>
          <exon e_start="88705" e_stop="88979"/>
          <exon e_start="89290" e_stop="89988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTAACACAAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTGGTAATTTTTGACTCTTCCTCCAATTTTTCATAGCTTGCAAAGTCTAGGTCAAAAAAAAAATCGAAACAGATTAAGCTTCGCGTTTGATCACAGTTTTTGGATCTGTTCCGCCATGGAATTTGAAAATCAGATCAAGTTCCTTAAAACAAGTTTTTCGACTTATAGCATAGCAACACAACTTCAAATCTCAAAAATCACAATTTCAAAAACTCATAGATTTCAACTTCTATATTCAAACAGGAGCTAAATTTCGAATTTTAAAAAATTATCTTCAAATATCCGTAAAAGTTAATCTTCGAACATTTTTAAGTTCCTAAAACTGTTTGGTTCTTTTTCTGAACTTTATTTTTTGTTGGTAATTGCAGAGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGTACCGCCTCGCCAACGTGGACCGCTCTGCTGGCAAGAACAATAACTTGAGGGTAAGTCCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGTAAAAACAAATGAAAATTTGTTAATATCAAGTTATCATTCTTCAA</genome_strand>
        <mrna_strand>GGCACGA--GCAAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTG.............................................................................................................................................................................................................................................................................................................................................................................AGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGTACCGCCTCGCCAACGTGGACCGCTCTGCTGGCAAGAACAATAACTTGAGG......................................................................................................................................................................................................................................................................................................................CTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGTAAAAACAAATGAAAATTTGTTAATATCAAGTTATCATTCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378159" ref_strand="+" ref_description="SGN-E378159 [TUS-20-A1]">
      <seq>taacacaaagcaggagcaggagcagcaacatccagagagaagaaaacagaggaagataagaggaaaatttatcgaattcgaatcgagagaaaaggggaagtgaagttgcgaagagtgagaatttcaaaggaaatgaacaaaggagcaaacggaaatcagcaattggagttaccggcgggattcagattccatccgacagacgacgaattggtgcagcactatctctgcaggaaatgcgccggacagtcgattgctgtatcaattatagctgaaattgatctttacaagtttgatccatggcagttgcctgagaaggctttgtacggtgaaaaagagtggtattttttctcaccaagggatagaaaatatccgaacggttcacggccgaaccgagcagcaggaaccggttattggaaggcaaccggagctgaataaccgggtgggaaacccaaaccttagggataaagaggcacttgtgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="87730" stop="89178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88030" g_stop="88339" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88340" i_stop="88704" i_length="365">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88705" g_stop="88878" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="482" r_length="172" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E378159" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88030" e_stop="88339"/>
          <exon e_start="88705" e_stop="88878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACAAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTGGTAATTTTTGACTCTTCCTCCAATTTTTCATAGCTTGCAAAGTCTAGGTCAAAAAAAAAATCGAAACAGATTAAGCTTCGCGTTTGATCACAGTTTTTGGATCTGTTCCGCCATGGAATTTGAAAATCAGATCAAGTTCCTTAAAACAAGTTTTTCGACTTATAGCATAGCAACACAACTTCAAATCTCAAAAATCACAATTTCAAAAACTCATAGATTTCAACTTCTATATTCAAACAGGAGCTAAATTTCGAATTTTAAAAAATTATCTTCAAATATCCGTAAAAGTTAATCTTCGAACATTTTTAAGTTCCTAAAACTGTTTGGTTCTTTTTCTGAACTTTATTTTTTGTTGGTAATTGCAGAGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCT</genome_strand>
        <mrna_strand>TAACACAAAGCAGGAGCAGGAGCAGCAACATCCAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTG.............................................................................................................................................................................................................................................................................................................................................................................AGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGAATAACCGGGTGGGAAACCC-AAACCTTAGGGATAAAG-AGGCACTTGTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279967" ref_strand="+" ref_description="SGN-E279967 [cLER-8-N17]">
      <seq>aacacaaagcaggagcaggagcagcaacaaacagagagaagaaaacagaggaagataagaggaaaatttatcgaattcgaatcgagagaaaaggggaagtgaagttgcgaagagtgagaatttcaaaggaaatgaacaaaggagcaaacggaaatcagcaattggagttaccggcgggattcagattccatccgacagacgacgaattggtgcagcactatctctgcaggaaatgcgccggacagtcgattgctgtatcaattatagctgaaattgatctttacaagtttgatccatggcagttgcctgagaaggctttgtacggtgaaaaagagtggtattttttctcaccaagggatagaaaatatccgaacggttcacggccgaaccgagcagcaggaaccggttattggaaggcaaccggagctgataaaccggtggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="87731" stop="89138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88031" g_stop="88339" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88340" i_stop="88704" i_length="365">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88705" g_stop="88838" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="443" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E279967" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88031" e_stop="88339"/>
          <exon e_start="88705" e_stop="88838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACAAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTGGTAATTTTTGACTCTTCCTCCAATTTTTCATAGCTTGCAAAGTCTAGGTCAAAAAAAAAATCGAAACAGATTAAGCTTCGCGTTTGATCACAGTTTTTGGATCTGTTCCGCCATGGAATTTGAAAATCAGATCAAGTTCCTTAAAACAAGTTTTTCGACTTATAGCATAGCAACACAACTTCAAATCTCAAAAATCACAATTTCAAAAACTCATAGATTTCAACTTCTATATTCAAACAGGAGCTAAATTTCGAATTTTAAAAAATTATCTTCAAATATCCGTAAAAGTTAATCTTCGAACATTTTTAAGTTCCTAAAACTGTTTGGTTCTTTTTCTGAACTTTATTTTTTGTTGGTAATTGCAGAGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGA</genome_strand>
        <mrna_strand>AACACAAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTG.............................................................................................................................................................................................................................................................................................................................................................................AGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240428" ref_strand="+" ref_description="SGN-E240428 [cLED-25-H10]">
      <seq>acacaaagcaggagcacgagcagcagcaaacagagagaagaaaacagaggaagataagaggaaaatttatcgaattcgaatcgagagaaaaggggaagtgaagttgccaagagagagaatttcaaaggaaatgaacaaaggagcaaacggaaatcagcaattggagttaccggcgggattcagattccatccgacagacgacgaattggtgcatcactatctctgcaggaaatgcgccggacagccgattgctgtatcaattatagctgaaattgatctttacaagtttgatccatggcagttgcctgagaaggctttgtacggtgaaaaagagtggtattttttctcaccaagggatagaaaatatccgaacggttcacggccgaaccgagcagcaggaaccgggtattggaaggcaaccggagctgatataccggtgggaaaacccaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="87732" stop="89150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88032" g_stop="88339" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88340" i_stop="88704" i_length="365">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88705" g_stop="88850" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="454" r_length="146" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E240428" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88032" e_stop="88339"/>
          <exon e_start="88705" e_stop="88850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTGGTAATTTTTGACTCTTCCTCCAATTTTTCATAGCTTGCAAAGTCTAGGTCAAAAAAAAAATCGAAACAGATTAAGCTTCGCGTTTGATCACAGTTTTTGGATCTGTTCCGCCATGGAATTTGAAAATCAGATCAAGTTCCTTAAAACAAGTTTTTCGACTTATAGCATAGCAACACAACTTCAAATCTCAAAAATCACAATTTCAAAAACTCATAGATTTCAACTTCTATATTCAAACAGGAGCTAAATTTCGAATTTTAAAAAATTATCTTCAAATATCCGTAAAAGTTAATCTTCGAACATTTTTAAGTTCCTAAAACTGTTTGGTTCTTTTTCTGAACTTTATTTTTTGTTGGTAATTGCAGAGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACC</genome_strand>
        <mrna_strand>ACACAAAGCAGGAGCACGAGCAGCAGCAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCCAAGAGAGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCATCACTATCTCTGCAGGAAATGCGCCGGACAGCCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTG.............................................................................................................................................................................................................................................................................................................................................................................AGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGGTATTGGAAGGCAACCGGAGCTGATATACCGGTGGGAAAACCCAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335343" ref_strand="+" ref_description="SGN-E335343 [cTOE-2-C21]">
      <seq>caaagcaggagcaggagcagcaacaaacagagagaagaaaacagaggaagataagaggaaaatttatcgaattcgaatcgagagaaaaggggaagtgaagttgcgaagagtgagaatttcaaaggaaatgaacaaaggagcaaacggaaatcagcaattggagttaccggcgggattcagattccatccgacagacgacgaattggtgcagcactatctctgcaggaaatgcgccggacagtcgattgctgtatcaattatagctgaaattgatctttacaagtttgatccatggcagttgcctgagaaggctttgtacggtgaaaaagagtggtattttttctcaccaagggatagaaaatatccgaacggttcacggccgaaccgagcagcaggaaccggttattggaaggcaaccggagctgataaaccggtgggaaaacccaaaaccttagggataaagaaggcacttgtgttctatgccggaaaagcacccagaggtataaaaacaaattggattatgcacgagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="87735" stop="89230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88035" g_stop="88339" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88340" i_stop="88704" i_length="365">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88705" g_stop="88930" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="531" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E335343" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88035" e_stop="88339"/>
          <exon e_start="88705" e_stop="88930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTGGTAATTTTTGACTCTTCCTCCAATTTTTCATAGCTTGCAAAGTCTAGGTCAAAAAAAAAATCGAAACAGATTAAGCTTCGCGTTTGATCACAGTTTTTGGATCTGTTCCGCCATGGAATTTGAAAATCAGATCAAGTTCCTTAAAACAAGTTTTTCGACTTATAGCATAGCAACACAACTTCAAATCTCAAAAATCACAATTTCAAAAACTCATAGATTTCAACTTCTATATTCAAACAGGAGCTAAATTTCGAATTTTAAAAAATTATCTTCAAATATCCGTAAAAGTTAATCTTCGAACATTTTTAAGTTCCTAAAACTGTTTGGTTCTTTTTCTGAACTTTATTTTTTGTTGGTAATTGCAGAGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGTA</genome_strand>
        <mrna_strand>CAAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTG.............................................................................................................................................................................................................................................................................................................................................................................AGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231923" ref_strand="+" ref_description="SGN-E231923 [cLED-7-F24]">
      <seq>aaagcaggagcaggagcagcaacaaacagagagaagaaaacagaggaagataagaggaaaatttatcgaattcgaatcgagagaaaaggggaagtgaagttgccaagagtgagaatttcaaaggaaatgaacaaaggagcaaacggaaatcagcaattggagttaccggcgggattcagattccatccgacagacgacgaattggtgcagcactatctctgcaggaaatgcgccggacagtcgattgctgtatcaattatagctgaaattgatctttacaagtttgatccatggcagctgcctgagaaggctttgtacggtgaaaaagagtggtattttttctcaccaagggatagaaaatatccgaacggttcacggccgaaccgagcagcaggaaccggttattggaaggcaaccggagctgataaaccggtgggaaaacccaaaaccttatggataaagaaggcacttgtgttctatgccggaaaagcacccataggtataaaaacaaattggattatgcacgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="87736" stop="89229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88036" g_stop="88339" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88340" i_stop="88704" i_length="365">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88705" g_stop="88929" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="529" r_length="225" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E231923" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88036" e_stop="88339"/>
          <exon e_start="88705" e_stop="88929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTGGTAATTTTTGACTCTTCCTCCAATTTTTCATAGCTTGCAAAGTCTAGGTCAAAAAAAAAATCGAAACAGATTAAGCTTCGCGTTTGATCACAGTTTTTGGATCTGTTCCGCCATGGAATTTGAAAATCAGATCAAGTTCCTTAAAACAAGTTTTTCGACTTATAGCATAGCAACACAACTTCAAATCTCAAAAATCACAATTTCAAAAACTCATAGATTTCAACTTCTATATTCAAACAGGAGCTAAATTTCGAATTTTAAAAAATTATCTTCAAATATCCGTAAAAGTTAATCTTCGAACATTTTTAAGTTCCTAAAACTGTTTGGTTCTTTTTCTGAACTTTATTTTTTGTTGGTAATTGCAGAGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGT</genome_strand>
        <mrna_strand>AAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCCAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGCTGCCTG.............................................................................................................................................................................................................................................................................................................................................................................AGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTATGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCATAGGTATAAAAACAAATTGGATTATGCACGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237494" ref_strand="+" ref_description="SGN-E237494 [cLED-19-E24]">
      <seq>aaagcaggagcaggagcagcaacaaacagagagaagaaaacagaggaagataagaggaaaatttatcgaattcgaatcgagagaaaaggggaagtgaagttgcgaagagtgagaatttcaaaggaaatgaacaaaggagcaaacggaaatcagcaattggagttaccggcgggattcagattccatccgacagacgacgaattggtgcagcactatctctgcaggaaatgcgccggacagtcgattgctgtatcaattatagctgaaattgatctttacaagtttgatccatggcagttgcctgagaaggctttgtacggtgaaaaagagtggtattttttctcaccaagggatagaaaatatccgaacggttcacggccgaaccgagcagcaggaaccggttattggaaggcaaccggagctgataaaccggtgggaaaacccaaaaccttagggataaagaaggcacttgtgttctatgccggaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="87736" stop="89190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88036" g_stop="88339" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88340" i_stop="88704" i_length="365">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88705" g_stop="88890" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="490" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E237494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88036" e_stop="88339"/>
          <exon e_start="88705" e_stop="88890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTGGTAATTTTTGACTCTTCCTCCAATTTTTCATAGCTTGCAAAGTCTAGGTCAAAAAAAAAATCGAAACAGATTAAGCTTCGCGTTTGATCACAGTTTTTGGATCTGTTCCGCCATGGAATTTGAAAATCAGATCAAGTTCCTTAAAACAAGTTTTTCGACTTATAGCATAGCAACACAACTTCAAATCTCAAAAATCACAATTTCAAAAACTCATAGATTTCAACTTCTATATTCAAACAGGAGCTAAATTTCGAATTTTAAAAAATTATCTTCAAATATCCGTAAAAGTTAATCTTCGAACATTTTTAAGTTCCTAAAACTGTTTGGTTCTTTTTCTGAACTTTATTTTTTGTTGGTAATTGCAGAGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAG</genome_strand>
        <mrna_strand>AAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTG.............................................................................................................................................................................................................................................................................................................................................................................AGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403853" ref_strand="+" ref_description="SGN-E403853 [PPC-11-N12]">
      <seq>cccaaaacattagggataaagaaggcacttgtgttctatgctggaaaagcacctagaggaataaaaaccaattggattatgcacgagtacaggctcgccaatgtggaccgctctgccggcaagaacaataacttgaggcttgatgattgggtattgtgtcgaatttacaacaagaaaggcacacttgagaagcattacaatgtggacaacaaggaaactgcaagctttggagaatttgatgaagaaataaaaccaaaaatattgcccacacaattagcacagatgccaccacggccccgatcgacaccgacaccgacaaacgactacttccatttcgaatcatcggagtcaatgactagaatgcacaccacaaactcgagctctggctcagagcatgtcttgtcgccatgtgacaaggaggttcagagcgcgcccaaatgggatgaagaccacagaaacacccttgattttcagctaaattatttggatggtttactaaatgaaccatttgaaacccaaatgcagcagcaaatttgcaactttgaccagttcaacaatttccaagacatgttcttttacatgcaaaagccttactaaaattgtataaattcattggatctaaattgattgtgatccatgacattttctttgttctttggtggtgtaggtcaactttttattaattagcttagaaagtacaaatgcaagtcaaatttggtgggctacagctcaaatgagccttgataagcaagctaaagagtcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="88542" stop="90214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88842" g_stop="88979" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88980" i_stop="89289" i_length="310">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89290" g_stop="89914" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="766" r_length="628" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E403853" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88842" e_stop="88979"/>
          <exon e_start="89290" e_stop="89914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGTACCGCCTCGCCAACGTGGACCGCTCTGCTGGCAAGAACAATAACTTGAGGGTAAGTCCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACA-C--CA--G-CAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTAT</genome_strand>
        <mrna_strand>CCCAAAACATTAGGGATAAAGAAGGCACTTGTGTTCTATGCTGGAAAAGCACCTAGAGGAATAAAAACCAATTGGATTATGCACGAGTACAGGCTCGCCAATGTGGACCGCTCTGCCGGCAAGAACAATAACTTGAGG......................................................................................................................................................................................................................................................................................................................CTTGATGATTGGGTATTGTGTCGAATTTACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTGCAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACAGATGCCACCACGGCCCCGATCGACACCGACACCGACAAACGACTACTTCCATTTCGAATCATCGGAGTCAATGACTAGAATGCACACCACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGATGAAGACCACAGAAACACCCTTGATTTTCAGCTAAATTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCTTTTACATGCAAAAGCCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGATTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAATTAGCTTAGA-AAGTAC-AAATGCAAGTCAAATTTGGTGGGCTACAGCTCAAATGAGCCTTGATAAGCA-AGCTAAAGAGTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233488" ref_strand="+" ref_description="SGN-E233488 [cLED-9-E13]">
      <seq>aagaaggcacttgtgttctatgccggaaaagcacccagaggtataaaaacaaattggattatgcacgagtaccgcctcgccaacgtggaccgctctgctggcaagaacaataacttgaggcttgatgattgggtattgtgtcgaatatacaacaagaaaggcacacttgagaagcattacaatgtggacaacaaggaaactacaagctttggagaatttgatgaagaaataaaaccaaaaatattgcccacacaattagcaccgatgccaccacggcctcgatcgacaccagcaaacgactacttttatttcgagtcatcagagtcgatgactagaatgcacacgacaaactcgagctctggctcagagcatgtcttgtcgccatgtgacaaggaggttcagagcgcgcccaaatgggacgaagaccacagaaacacccttgattttcagctaaactatttggatggtttactaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="88560" stop="89947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88860" g_stop="88979" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88980" i_stop="89289" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89290" g_stop="89647" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="478" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E233488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88860" e_stop="88979"/>
          <exon e_start="89290" e_stop="89647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGTACCGCCTCGCCAACGTGGACCGCTCTGCTGGCAAGAACAATAACTTGAGGGTAAGTCCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATG</genome_strand>
        <mrna_strand>AAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGTACCGCCTCGCCAACGTGGACCGCTCTGCTGGCAAGAACAATAACTTGAGG......................................................................................................................................................................................................................................................................................................................CTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349579" ref_strand="+" ref_description="SGN-E349579 [cTOS-1-L13]">
      <seq>acgagtaccgcctcgccaacgtggaccgctctgctggcaagaacaataacttgaggcttgatgattgggtattgtgtcgaatatacaacaagaaaggcacacttgagaagcattacaatgtggacaacaaggaaactacaagctttggagaatttgatgaagaaataaaaccaaaaatattgcccacacaattagcaccgatgccaccacggcctcgatcgacaccagcaaacgactacttttatttcgagtcatcagagtcgatgactagaatgcacacgacaaactcgagctctggctcagagcatgtcttgtcgccatgtgacaaggaggttcagagcgcgcccaaatgggacgaagaccacagaaacacccttgattttcagctaaactatttggatggtttactaaatgaaccatttgaaacccaaatgcagcagcaaatttgcaactttgaccagttcaacaatttccaagacatgttcctatacatgcaaaaaccttactaaaattgtataaattcattggatctaaattgagtgtgatccatgacattttctttgttctttggtggggtaggtcaactttttattaagtagtttagagaagtacaaaatgctagtcaaatttggtgggctacagcacaaatgagccttgataagcatagccaaagagtcgtatagaagggcttattattattgtaaggtatgtaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="88624" stop="90250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88924" g_stop="88979" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88980" i_stop="89289" i_length="310">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89290" g_stop="89950" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="717" r_length="661" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E349579" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88924" e_stop="88979"/>
          <exon e_start="89290" e_stop="89950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGTACCGCCTCGCCAACGTGGACCGCTCTGCTGGCAAGAACAATAACTTGAGGGTAAGTCCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGTAAAAAC</genome_strand>
        <mrna_strand>ACGAGTACCGCCTCGCCAACGTGGACCGCTCTGCTGGCAAGAACAATAACTTGAGG......................................................................................................................................................................................................................................................................................................................CTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGGGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGTAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389802" ref_strand="+" ref_description="SGN-E389802 [TUS-4-F21]">
      <seq>tccttcttcagctttaattttttattttcggagatgagattcaagattcgagtaatatagtatggtaaaattactgagtttacgtgaactatactcacatctctaatagtgatatctcctaagatttacaatgtttcaaatgaaaaatagtggaagatttcactttaattatcaacaattaggtgtggcacccatttaacatatagtaataagtaaaataaaatggtcattatattctgtaacttatgagtgcaaaatacaatttgtaaattgtttattgattatgtgatttgacattattgcagcttgatgattgggtattgtgtcgaatatacaacaagaaaggcacacttgagaagcattacaatgtggacaacaaggaaactacaagctttggagaatttgatgaagaaataaaaccaaaaatattgcccacacaattagcaccgatgccaccacggcctcgatcgacaccagcaaacgactacttttatttcgagtcatcagagtcgatgactagaatgcacacgacaaactcgagctctggctcagagcatgtcttgtcgccatgtgacaaggaggttcagagcgcgccccaatgggacgaagaccacagaaacacccttgattttcagctaaactatttggatggtttactaaatgaaccatttgaaaccccaatgcagcagcaaatttgcaactttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="88685" stop="89991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88985" g_stop="89691" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E389802" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88985" e_stop="89691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGAC</genome_strand>
        <mrna_strand>TCCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCCAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCCAATGCAGCAGCAAATTTGCAACTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550122" ref_strand="+" ref_description="SGN-E550122 [TUS-5-F33]">
      <seq>tccttcttcagctttaattttttattttcggagatgagattcaagattcgagtaatatagtatggtaaaattactgagtttacgtgaactatactcacatctctaatagtgatatctcctaagatttacaatgtttcaaatgaaaaatagtggaagatttcactttaattatcaacaattaggtgtggcacccatttaacatatagtaataagtaaaataaaatggtcattatattctgtaacttatgagtgcaaaatacaatttgtaaattgtttattgattatgtgatttgacattattgcagcttgatgattgggtattgtgtcgaatatacaacaagaaaggcacacttgagaagcattacaatgtggacaacaaggaaactacaagctttggagaatttgatgaagaaataaaaccaaaaatattgcccacacaattagcaccgatgccaccacggcctcgatcgacaccagcaaacgactacttttatttcgagtcatcagagtcgatgactagaatgcacacgacaaactcgagctctggctcagagcatgtcttgtcgccatgtgacaaggaggttcagagcgcgcccnaatgggacgaagaccacagaaacacccttgattttcagctaaactatttggatggtttactaaatgaaccatttgaaacccaaatgcagcagcaaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="88685" stop="89981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88985" g_stop="89681" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E550122" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88985" e_stop="89681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTG</genome_strand>
        <mrna_strand>TCCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCNAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377658" ref_strand="+" ref_description="SGN-E377658 [TUS-20-O2]">
      <seq>ccttcttcagctttaattttttattttcggagatgagattcaagattcgagtaatatagtatggtaaaattactgagtttacgtgaactatactcacatctctaatagtgatatctcctaagatttacaatgtttcaaatgaaaaatagtggaagatttcactttaattatcaacaattaggtgtggcacccatttaacatatagtaataagtaaaataaaatggtcattatattctgtaacttatgagtgcaaaatacaatttgtaaattgtttattgattatgtgatttgacattattgcagcttgatgattgggtattgtgtcgaatatacaacaagaaaggcacacttgagaagcattacaatgtggacaacaaggaaactacaagctttggagaatttgatgaagaaataaaaccaaaaatattgcccacacaattagcaccgatgccaccacggcctcgatcgacaccagcaaacgactacttttatttcgagtcatcagagtcgatgactagaatgcacacgacaaactcgagctctggctcagagcatgtcttgtcgccatgtgacaaggaggttcagagcgcgcccaaatgggacgaagaccacagaaacacccttgattttcagctaaactatttggatggtttactaaatgaaccttttgaaacccaaatgcagcagcaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="88686" stop="89979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88986" g_stop="89679" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E377658" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88986" e_stop="89679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATT</genome_strand>
        <mrna_strand>CCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCTTTTGAAACCCAAATGCAGCAGCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231927" ref_strand="+" ref_description="SGN-E231927 [cLED-7-H20]">
      <seq>ccttcttcagctttaattttttattttcggagatgagattcaagattcgagtaatatagtatggtaaaattactgagtttacgtgaactatactcacatctctaatagtgatatctcctaagatttacaatgtttcaaatgaaaaatagtggaagatttcactttaattatcaacaattaggtgtggcacccatttaacatatagtaataagtaaaataaaatggtcattatattctgtaacttatgagtgcaaaatacaatttgtaaattgtttattgattatgtgatttgacattattgcagcttgatgattgggtattgtgtcgaatatacaacaagaaaggcacacttgagaagcattacaatgtggacaacaaggaaactacaagctttggagaatttgatgaagaaataaaaccaaaaatattgcccacacaattagcaccgatgccaccacggcctcgatcgacaccagcaaacgactacttttatttcgagtcatcagagtcgatgactagaatgcacacgacaaactcgagctctggctcagagcatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="88686" stop="89845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88986" g_stop="89545" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E231927" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88986" e_stop="89545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCT</genome_strand>
        <mrna_strand>CCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389542" ref_strand="+" ref_description="SGN-E389542 [TUS-4-F21](-)">
      <seq>taagtaaaataaaatggtcattatattctgtaacttatgagtgcaaaatacaatttgtaaattgtttattgattatgtgatttgacattattgcagcttgatgattgggtattgtgtcgaatatacaacaagaaaggcacacttgagaagcattacaatgtggacaacaaggaaactacaagctttggagaatttgatgaagaaataaaaccaaaaatattgcccacacaattagcaccgatgccaccacggcctcgatcgacaccagcaaacgactacttttatttcgagtcatcagagtcgatgactagaatgcacacgacaaactcgagctctggctcagagcatgtcttgtcgccatgtgacaaggaggttcagagcgcgcccaaatgggacgaagaccacagaaacacccttgattttcagctaaactatttggatggtttactaaatgaaccatttgaaacccaaatgcagcagcaaatttgcaactttgaccagttcaacaatttccaagacatgttcctatacatgcaaaaaccttactaaaattgtataaattcattggatctaaattgagtgtgatccatgacattttctttgttctttggtggtgtaggtcaactttttattaagtagtttagagaagtacaaaatgctagtcaaatttggtgggctacagcacaaatgagccttgataagcatagccaaagagtcgtatagaagggcttattattattgtaaggtatgtaaaaacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="88894" stop="90254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89194" g_stop="89954" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E389542" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89194" e_stop="89954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGTAAAAACAAAT</genome_strand>
        <mrna_strand>TAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGTAAAAACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550123" ref_strand="+" ref_description="SGN-E550123 [TUS-5-F33](-)">
      <seq>tgcagcttgatgattgggtattgtgtcgaatatacaacaagaaaggcacactgnagaagcattacaatgtggacaacaaggaaactacaagctttggagaatttgatgaagaaataaaaccaaaaatattgcccacacaattagcaccgatgccaccacggcctcgatcgacaccagcaaacgactacttttatttcgagtcatcagagtcgatgactagaatgcacacgacaaactcgagctctggctcagagcatgtcttgtcgccatgtgacaaggaggttcagagcgcgcccaaatgggacgaagaccacagaaacacccttgattttcagctaaactatttggatggtttactaaatgaaccatttgaaacccaaatgcagcagcaaatttgcaactttgaccagttcaacaatttccaagacatgttcctatacatgcaaaaaccttactaaaattgtataaattcattggatctaaattgagtgtgatccatgacattttctttgttctttggtggtgtaggtcaactttttattaagtagtttagagaagtacaaaatgctagtcaaatttggtgggctacagcacaaatgagccttgataagcatagccaaagagtcgtatagaagggcttattattattgtaaggtatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="88985" stop="90245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89285" g_stop="89945" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E550123" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89285" e_stop="89945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGTA</genome_strand>
        <mrna_strand>TGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTGNAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404381" ref_strand="+" ref_description="SGN-E404381 [PPC-13-F8]">
      <seq>gggtattgtgtcgaatttacaacaagaaaggcacacttgagaagcattacaatgtggacaacaaggaaactgcaagctttggagaatttgatgaagaaataaaaccaaaaatattgcccacacaattagcacagatgccaccacggccccgatcgacaccgacaccgacaaacgactacttccatttcgaatcatcggagtcaatgactagaatgcacaccacaaactcgagctctggctcagagcatgtcttgtcgccatgtgacaaggaggttcagagcgcgcccaaatgggatgaagaccacagaaacacccttgattttcagctaaattatttggatggtttactaaatgaaccatttgaaacccaaatgcagcagcaaatttgcaactttgaccagttcaacaatttccaagacatgttcttttacatgcaaaagccttactaaaattgtataaattcattggatctaaattgattgtgatccatgacattttctttgttctttggtggtgtaggtcaactttttattaattagcttagaaaagtacaaaatgcaagtcaaatttggtgggctacagctcaaatgagccttgataagcaaagctaaagagtcatatagaagggcttattattgtaaggtacatgtaaaacaaatgaaaatttgttaatatcaagttatcattcttcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="89000" stop="90289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89300" g_stop="89994" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E404381" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89300" e_stop="89994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACA-C--CA--G-CAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGT-AAAAACAAATGAAAATTTGTTAATATCAAGTTATCATTCTTCAAATCTCT</genome_strand>
        <mrna_strand>GGGTATTGTGTCGAATTTACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTGCAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACAGATGCCACCACGGCCCCGATCGACACCGACACCGACAAACGACTACTTCCATTTCGAATCATCGGAGTCAATGACTAGAATGCACACCACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGATGAAGACCACAGAAACACCCTTGATTTTCAGCTAAATTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCTTTTACATGCAAAAGCCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGATTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAATTAGCTTAGAAAAGTACAAAATGCAAGTCAAATTTGGTGGGCTACAGCTCAAATGAGCCTTGATAAGCAAAGCTAAAGAGTCATATAGAAGGGC---TTATTATTGTAAGGTACATGTAAAACAAATGAAAATTTGTTAATATCAAGTTATCATTCTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716831" ref_strand="+" ref_description="SGN-E716831 [FB18AF04]">
      <seq>cgaatatacaacaagaaaggcacacttgagaagcattacaatgtggacaacaaggaaactacaagctttggagaatttgatgaagaaataaaaccaaaaatattgcccacacaattagcaccgatgccaccacggcctcgatcgacaccagcaaacgactacttttatttcgagtcatcagagtcgatgactagaatgcacacgacaaactcgagctctggctcagagcatgtcttgtcgccatgtgacaaggaggttcagagcgcgcccaaatgggacgaagaccacagaaacacccttgattttcagctaaactatttggatggtttactaaatgaaccatttgaaacccaaatgcagcagcaaatttgcaactttgaccagttcaacaatttccaagacatgttcctatacatgcaaaaaccttactaaaattgtataaattcattggatctaaattgagtgtgatccatgacattttctttgttctttggtggtgtaggtcaactttttattaagtagtttagagaagtacaaaatgctagtcaaatttggtgggctacagcacaaatgagccttgataagcatagccaaagagtcgtatagaagggcttattattattgtaaggtatgtaaaaacaaatgaaaatttgttaatatcaagttatcattcttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="89011" stop="90289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89311" g_stop="89988" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="679" polyA_stop="694"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E716831" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89311" e_stop="89988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGTAAAAACAAATGAAAATTTGTTAATATCAAGTTATCATTCTTCAA</genome_strand>
        <mrna_strand>CGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGTAAAAACAAATGAAAATTTGTTAATATCAAGTTATCATTCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376982" ref_strand="+" ref_description="SGN-E376982 [TUS-20-A1](-)">
      <seq>agaccccagaaacccccttgattttcagataaactatttggatggtttactaaatgaacccttttaaacccaaatgcaacagcaaatttgcaactttgaccagttcaacaatttccaaaacatgttcctatacatgcaaaaaccctactaaaattgtataaattcattggatttaaattgagtgtgatccctgacattttttttgttttttggtggggtaggtcaactttttattaagtagtttaaaaaagtacaaaatgctagtcaaatttggtggggtacagcccaaattagcctttataagcatagccaaaaagtcgtataaaagggcttatttttattgtaaggtatgttaaaaccaatgaaaatttgtttatatcccaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="89292" stop="114134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89592" g_stop="89973" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89974" i_stop="90164" i_length="191">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.296" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90165" g_stop="90171" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="389" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90172" i_stop="90947" i_length="776">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90948" g_stop="90983" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="425" r_length="36" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E376982" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89592" e_stop="89973"/>
          <exon e_start="90165" e_stop="90171"/>
          <exon e_start="90948" e_stop="90983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGTAAAAACAAATGAAAATTTGTTAATATCAAGTTATCATTCTTCAAATCTCTGTGATTATGACTCTCCTACACTGGTTCAAATAGAAATTAGCATATTTAAGAGCTCAGGGTTCAGGGGCAAAGTTATCGACATCGATGTGTCTGATTCATGTAGGCATGAGAGCTAAAACTTTCTATTGTAAGATCCACAATAAGACAGTCGACTTGGGTGAAAACAATAGGAAAAAAGCCTAACAAATCATCAAGTTGAGTTGTTAACACTAAACAGTGACGAAGACTCTTTCCTACATACAACATAGATGAATGTAACAAATAACAAGGCAAAACATCTTTAACCTAGCAGTTAGTAAGATTTCGATTACCTCATATAAGAACTTCGCATCGTCCTTGATATAAAATTTAAAAGAGCAAGAAACGAAATGAAATTCCTTACGTAAGGAGGAGTGTGGCTGCGCCTCGTTTCATCATCATATGTTAGCAGACACTTATCCTTTCCAGCTTCCGCTACATACTAGTGAGTGCTGACTCCTCGGTAACTGTCAACGCACCTCCAAATGGACTGCAAGCCAGTATGTACCTGGAGTTTCTCCAAGTGTGTCCTTTAATTAAGTGTCAATCGCCTCCATATGTCGAACATTACATGATTGCAATATCATCCTAGTCTCGAGACAATCCAAACACTAACCTGTAAACTGTAATCAAGTTGCTGGTTATTGTCTCTCCTGTTGATTCTGTCTCTTTTAAATCAGGATGTCCTCCTCTACAACTGGGGAAGTGGAGCTTTGGGTTTCAGTTATGGGCCTCTTTGAACAGTTTGGATTCCTTTGGGGTCTTTGATCCAGTTTCACACTGTCTTTCCTATCTCTTTTTCACATTGAAGGACATAATGGATATGCAATTTGATATGTATGACTACCTTGCAAAACAAGACGTAACACTTTGAGTAGGGACTGAAATTATGTACGAGATATGTCTGTCTGCACTTGTTATACCATTTTCTGTAGTCGAAAGGAAGTAGACAACAACAAAAACATACCCAA</genome_strand>
        <mrna_strand>AGACCCCAGAAACCCCCTTGATTTTCAGATAAACTATTTGGATGGTTTACTAAATGAACCCTTTTAAACCCAAATGCAACAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAAACATGTTCCTATACATGCAAAAACCCTACTAAAATTGTATAAATTCATTGGATTTAAATTGAGTGTGATCCCTGACATTTTTTTTGTTTTTTGGTGGGGTAGGTCAACTTTTTATTAAGTAGTTTAAAAAAGTACAAAATGCTAGTCAAATTTGGTGGGGTACAGCCCAAATTAGCCTTTATAAGCATAGCCAAAAAGTCGTATAAAAGGGCTTATTTTTATTGTAAGGTATGTTAAAACCAATGAAAATTTGTTTATATCCC...............................................................................................................................................................................................AAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334946" ref_strand="+" ref_description="SGN-E334946 [cTOE-9-C16]">
      <seq>gggaaaaagcccccttattcaggagacacctttcagtcacaaaagcatgttaccttggagcctgaatggcataaccatggggaaattgagaaaaaaaacctttcaagaaaaagcaggtatgccaaaggctttaacctctaaccatgcatgccatctaacaaaccaataaatgtcatgaatctagaatcttgtaaacaaacatcatgttcattgtctaaatcagctgataggtgtaatactatgaaaagaaatcctaaagctaagtcaggcttacttggaatccgaaagcaaaagaatgggagatatagtgctgaaattagagacccgattaagcataagcaagtatggttaggtactttcaacactattgaagaggcttcacaagcttatttatccaagaagtctgagtttgatatgttaactcagggatataaggaggataaaccaaataattgtgatcaaactaagcctgaatcatctgttggggcatcattgtctagtgggggtagaaataaaaaaatggattctcccaaacaacgcgtatcattggggttcgcaagaaccagtgggggaaatatacatctgagattataaaccccattagtaagaaaaagatttggttggggacttttggcacgtatgaagaggcttccctagcttatcaatctaagaagctagagtttcgggaaatagtcaaggcaaagaagaaatgtagtaagaaaattcatttaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="93040" stop="91714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92740" g_stop="92014" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E334946" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92740" e_stop="92014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAAAG-CCCCTTATTCAGGAGATATCTTTCAGTCACAAAAGCATGTTA-CTTGGAG-CTGAATGGCATAA-CATGGGGAAATTGAGAAAAAAAA-CTTTCAAGAAAAAGCAGGTATG-CAAAGGCTTTAA-CTCTAA-CATGCATG-CATCTAACAAACCAATAAATGTCATGAATCTAGAATCTTGTAAACAAACATCATGTTCATTGTCTAAATCAGCTGATAGGTGTAATACTATGAAAAGAAATCCTAAAGCTAAGTCAGGCTTACTTGGAATCCGAAAGCAAAAGAATGGGAGATATAGTGCTGAAATTAGAGACCCGATTAAGCATAAGCAAGTATGGTTAGGTACTTTCAACACTATTGAAGAGGCTTCACAAGCTTATTTATCCAAGAAGTCTGAGTTTGATATGTTAACTCAGGGATATAAGGAGGATAAACCAAATAATTGTGATCAAACTAAGCCTGAATCATCTGTTGGGGCATCATTGTCTAGTGGGGGTAGAAATAAAAAAATGGATTCTCCCAAAACAACGCGTATCATTGGGGTTCGCAAGAACCAGTGGGGGAAATATACATCTGAGATTATAAACCCCATTAGTAAGAAAAAGATTTGGTTGGGGACTTTTGGCACGTATGAAGAGGCTTCCCTAGCTTATCAATCTAAGAAGCTAGAGTTTCGGGAAATAGTCAAGGCAAAGAAGAAATGTAGTAAGAAAATTCATTTAAATG</genome_strand>
        <mrna_strand>GGGAAAAAGCCCCCTTATTCAGGAGACACCTTTCAGTCACAAAAGCATGTTACCTTGGAGCCTGAATGGCATAACCATGGGGAAATTGAGAAAAAAAACCTTTCAAGAAAAAGCAGGTATGCCAAAGGCTTTAACCTCTAACCATGCATGCCATCTAACAAACCAATAAATGTCATGAATCTAGAATCTTGTAAACAAACATCATGTTCATTGTCTAAATCAGCTGATAGGTGTAATACTATGAAAAGAAATCCTAAAGCTAAGTCAGGCTTACTTGGAATCCGAAAGCAAAAGAATGGGAGATATAGTGCTGAAATTAGAGACCCGATTAAGCATAAGCAAGTATGGTTAGGTACTTTCAACACTATTGAAGAGGCTTCACAAGCTTATTTATCCAAGAAGTCTGAGTTTGATATGTTAACTCAGGGATATAAGGAGGATAAACCAAATAATTGTGATCAAACTAAGCCTGAATCATCTGTTGGGGCATCATTGTCTAGTGGGGGTAGAAATAAAAAAATGGATTCTCCC-AAACAACGCGTATCATTGGGGTTCGCAAGAACCAGTGGGGGAAATATACATCTGAGATTATAAACCCCATTAGTAAGAAAAAGATTTGGTTGGGGACTTTTGGCACGTATGAAGAGGCTTCCCTAGCTTATCAATCTAAGAAGCTAGAGTTTCGGGAAATAGTCAAGGCAAAGAAGAAATGTAGTAAGAAAATTCATTTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365595" ref_strand="+" ref_description="SGN-E365595 [cLPT-12-E23]">
      <seq>tcgactaacaaaactgctaatgctgctgccggttccactgatgctgatcatgggaaaaagccccttattcaggagatatctttcagtcacaaaagcatgttacttggagctgaatggcataacatggggaaattgagaaaaaaaacattcaagaaaaagcaggtatgcaaaggctttaactctaacatgcatgcatctaacaaaccaataaacgtcatgaatctagaatcttgtaaacaaacatcatgttcattgtctaaatcagctgataggtgtaatactatgaaaagaaatcctaaagctaagtcaggcttacttggaatccgaaagcaaaagaatgggagatatagtgctgaaattagagacccaattaagcataagcaagtatggttaggtactttcaacactattgaagaggcttcacaagcttatttgtccaagaagtctgagtttgatatgttaactcagggatataaggaggataaaccaaataattgtgatcaaactaagcctgaatcatctgttggggcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="93091" stop="91958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92791" g_stop="92258" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E365595" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92791" e_stop="92258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACTAACAAAACTGCTAATGCTGCTGCCGGTTCCACTGATGCTGATCATGGGAAAAAGCCCCTTATTCAGGAGATATCTTTCAGTCACAAAAGCATGTTACTTGGAGCTGAATGGCATAACATGGGGAAATTGAGAAAAAAAACTTTCAAGAAAAAGCAGGTATGCAAAGGCTTTAACTCTAACATGCATGCATCTAACAAACCAATAAATGTCATGAATCTAGAATCTTGTAAACAAACATCATGTTCATTGTCTAAATCAGCTGATAGGTGTAATACTATGAAAAGAAATCCTAAAGCTAAGTCAGGCTTACTTGGAATCCGAAAGCAAAAGAATGGGAGATATAGTGCTGAAATTAGAGACCCGATTAAGCATAAGCAAGTATGGTTAGGTACTTTCAACACTATTGAAGAGGCTTCACAAGCTTATTTATCCAAGAAGTCTGAGTTTGATATGTTAACTCAGGGATATAAGGAGGATAAACCAAATAATTGTGATCAAACTAAGCCTGAATCATCTGTTGGGGCATCA</genome_strand>
        <mrna_strand>TCGACTAACAAAACTGCTAATGCTGCTGCCGGTTCCACTGATGCTGATCATGGGAAAAAGCCCCTTATTCAGGAGATATCTTTCAGTCACAAAAGCATGTTACTTGGAGCTGAATGGCATAACATGGGGAAATTGAGAAAAAAAACATTCAAGAAAAAGCAGGTATGCAAAGGCTTTAACTCTAACATGCATGCATCTAACAAACCAATAAACGTCATGAATCTAGAATCTTGTAAACAAACATCATGTTCATTGTCTAAATCAGCTGATAGGTGTAATACTATGAAAAGAAATCCTAAAGCTAAGTCAGGCTTACTTGGAATCCGAAAGCAAAAGAATGGGAGATATAGTGCTGAAATTAGAGACCCAATTAAGCATAAGCAAGTATGGTTAGGTACTTTCAACACTATTGAAGAGGCTTCACAAGCTTATTTGTCCAAGAAGTCTGAGTTTGATATGTTAACTCAGGGATATAAGGAGGATAAACCAAATAATTGTGATCAAACTAAGCCTGAATCATCTGTTGGGGCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="-" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="94678" stop="93619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94378" g_stop="93919" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="-" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94378" e_stop="93919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATGAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTAAAATTTCATAC</genome_strand>
        <mrna_strand>TTATTGTAGATGACCAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATGAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTAAAATTTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342022" ref_strand="+" ref_description="SGN-E342022 [cTOF-10-O4]">
      <seq>cggagaagcctccggagcttatttagattttgtaactcagacgcgaaatggcgatgcagctgattggcaagaagaggtttaccaacagtgaaaatttcatcattgtggtgcctccaaatgagtttgtctgagtctggcagactgcacaaagcaacagcagactgcgcaactgccagcccacaagatgtcacagcttcaccagctaactgatgctaatgacctaatgatgaggcagcaaatgggaatgaaaacaggagttttacagcaacagcagtcagttggatttcatcatccgcaagtgaagccggaaatatcttcagctcaaacctatcaggcagtatctcctcaggaacaaaacctacctgctttggatgaaagcaagaacggtgcaaatgtgtcctggaattttcaatgaagcttttcccaataaatgaggtgcgtgaagctctcatgaggtttcataagtcgcaggctcttcaagagcacatttacttattaagcctacgaaggagatgtatctattagagctcaagtatttatacctaaagattgcttctaaagtctggcaggtaccaaacgaccccttaaagctaaatccattctacacatataaaactcttctaatctatctcagaaattgagatggattggtataattggatggctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="98428" stop="107334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98732" g_stop="98802" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="88" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98803" i_stop="100155" i_length="1353">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.503" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100156" g_stop="100416" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="349" r_length="261" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100417" i_stop="100624" i_length="208">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100625" g_stop="100710" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="435" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100711" i_stop="102162" i_length="1452">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102163" g_stop="102221" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="494" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102222" i_stop="106008" i_length="3787">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106009" g_stop="106083" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="569" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106084" i_stop="106848" i_length="765">
            <donor d_prob="0.488" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106849" g_stop="106913" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="634" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="106914" i_stop="106998" i_length="85">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.300" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="106999" g_stop="107034" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="670" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E342022" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98732" e_stop="98802"/>
          <exon e_start="100156" e_stop="100416"/>
          <exon e_start="100625" e_stop="100710"/>
          <exon e_start="102163" e_stop="102221"/>
          <exon e_start="106009" e_stop="106083"/>
          <exon e_start="106849" e_stop="106913"/>
          <exon e_start="106999" e_stop="107034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTAGATTTTGTAACTCAGACGCGAAATGGCGATGCAGCTGATTGGCAAGAAGAGGTTTACCAACAGGTATTGTCTGCAATGATGTTTTTATTTACGCGAGATTTTGAAAATTGAGGAAATTACATATGTGAATTTTGATTAATTGCCTCGTTATAACATTATTATATATAGCTGAATCTTGTGAAATATTTCCTATATGATAAAATAGAGTAATAGAGGAGGTTTACCATATTGAGTGTTTACTACTAAATTTGTGGTCATACCCTTCCCTGCAAGGTGCTTTATGTATCCCATTTTTAGAGGAGATAGAAAATTGAGCCTGTTACTTGGTAATTTGTTAGAAATTCGTATATTCTCAATTGAGAACTACTTGTACAACTATGCCTCAGTCCCAAGAAAGTTGAGGTCTGTGCTATACCCTCCCTGCTAGGTGCTTTATGTATTCCATTTTCTTTAAAGGAAATAGGAAATTGAGCCTGTTACTAGGTAATTTGTTAGAAATTGGTATATTCTCAATTAAGAATTACTGTTACAACGGTATAGCTATGCCTCAATCCTAATAAAGTTGAGATCCACTATATAAATTCTCACTATTGATAGCCCATTGTTTAACTTTGTCTTGGTCCTTTTATCCTATATTGTCAATGAAAAAAAATAGTTTCACAAGCACCGACATAATTGAGAAGTGAAATATTGTTTGATAAATTTATTGATTATAGAAAATTAGTTTTTGAATGTTGTGATCGTATTATCTAAATTCATGAGGTAAATGTATGTAAGTTCGAGTCGAAGTTTTTTTTTTTTTTTTTTTGAAATTGGTAAATTGTATCCCTTCAGCATTAAGGTTATGCTGGCCACCTCCGAAAAATTTACAAAAAAGAGATAGAAAAAACATATAAAATCCACTAGTTGGATTTCCTCTTCTATACTCTGTTCTTTACACCAGAAACCAAGTGAAGTAACAACTTTCCACTTAATCTTCAAAATAGAGGTCTTTTCCTTCGAAGATCCTCTGGTTCCTCTCCTTCCAAATGGTCCACCAGATGCAGGCTGGGACTGTCATCCACCATATTTTTTGGCTTTTGCTTCCTCCTCTTCTGATCCAGCAGCTAAGCAAGTCCGCAGTATGTTTAGGCATGATCCAGTTGATTCCAGCAATGGCGGCGAACATATTCCAAACTTGTGTCGTTACTTTGCAATGCATGAAAAGGTGTTTGTTGGTTTCTAGTGCCTCCTCGCAGAGGAGGCATCTAGATGCTATGATGGACCCCCTTTTTTGCAGTGCCTCATGTGTCAAGCATGCTTTCCTAGCTAATAGCCAAGTGAAGCATTTCACTTTATTAGGAGCCACACTTTTCCAAGGTCCAGTTGACCTGCCTCCAGCAACACTCAATTCCCTTTTGTATACTCTGTTAACAGTGAAAATTTCATCATTGTGGTGCCTCCAAATGAGTTTGTCTGAGTCTGGCAGACTGCACAAAGCAACAGCAGACTGCGCAACTGCCAGCCCACAAGATGTCACAGCTTCACCAGCTAACTGATGCTAATGACCTAATGATGAGGCAGCAAATGGGAATGAAAACAGGAGTTTTACAGCAACAGCAGTCAGTTGGATTTCATCATCCGCAAGTGAAGTCGGAAATATCTTCAGCTCAAACCTATCAGGCAGTATCTCCTCAGGTATGTCGTCAACATTTTATGGATTGTGTATAACTAAACTTGACGAGTGTTTATAGCATGTTTAGGAGAAAAGGCTTAAAATAATCTATTATCTATGGACTAAGCTCAAAATGATCCTATTTCTTTCATATGGAGCACTAATAGTCCCTTTTCTTTGATAAATGGTGCACTTTTAGTCCTAACTTTAACACCCTTAATCTTTTAATAGGAACAAAACCTACCTGCTTTGGATGAAAGCAAGAACGGTGCAAATGTGTCCTGGAATTTTCAATGAAGCTTTTCCCAATAAATGAGGTAATCATTTTGTTCTTGTTCGATCTTTATATATCTGTCCTTTTAAATGACTTCTACTGAAAGAGAGAACAAGAACTTGACAACCATGACAAGCTCTTGTCCATTGATTTTTAGAAACTGGAATAAGTCCCAAGTGTGAGAAACGGAGAGGACGAAATAGTGTAAGCAAGGAATAGGTGTTTAATATTTATTTTATATACTTTCAGTCTTTGTTTGCTAGAGTAAATTACATCAAAGAAAGAGAATTCTGACTAGTAAAAAGTTTCACGATGAATAGGATTATTACCCACCACTTAAACAAAGACTAAGAATTATTAGTGTTCCTGGAAAAGAAATAGGATAATTTTAAGCCTGTCCAAGGATAGTGGACTATTTTGAGCCTTTACTCTCATGTTGAGGAATAGATGAGGAGAGATTAGAGAAATATTGAGGCTTATTTAAGAAGGACGAGACATTGTTGGCTGATATTTAAAAAAAATTGACTTATTCGGTGAATATGCAAAATGTTGAAGTTTCTATGGACATAAGATGTCTAGCTAAGTTCGTGAACTCCTCGTGGACATGTGATGATTGACCAAAGAAGAAACACATTTGGTACTTATCCTAATTTCATGCAACAATGGTTTATGTTAGTCAAATGTAGTGTTCGAAGACTAGTTTTATACGAAACTGAACACAACCCTAAATTCAATGAACAAGCTTTAAAAATTAATTTAATTGTTCTTGAACAAACAATGCTTCATGGATTCTTTATACTCAAAAGAATTTTTTCATTGACCAAGCAAGAGAATCTAAAATATAATATGATTTTTGACAGATAAAAGTTGTTTATTAGACCTATAAAGTTGCCTTCGATTTCAACATTATGAGCATTACCAATGTATTATTTTCATGCATCATCACAAAACTTTGAAAGTGATAGTTGATGTGTTCAGGAAAGTGAACATTGGTTTATTTATGTCGTCAACATAAACAAGAAGTACAAGAAATCTCGATGCTGTTTTCTTTATAAAAAAATATAAATAAGAAAAGTCACTATTATATTCTTCGTCGTATGAATATTCACTAAGGTGATTAAGTCACATCCACCTTATTTGATGTTCTCTATAAGGATTATGAGTTTATAGAAACTTGTAAATGCTTCAAGCATTTTGAGTCCTTCGGGAAGTTTCTTTTGATTTTGTCAAGTGACAATATCTGGTATTAAATGTCCGATCCTCTGATGCATCGATTGTTGGTCCAATAAGGTTACACTTATCAAGATGCATGTCATTTCACTTGATAAACATTTCTACACCGGTATGCTTAAATAAACATATAATTTAGATCCTCACATTCTGTTACAATATTATGGGCTATATTGTATCAAATATATCGTCATTGAGTTATCATTTTGTATCAGTTCGAAGTGCGACGTAACTTACTAAGATCTCATTACTTCATTATTTACAGGTGCGTGAAGCTCTCATGAGGTTTCATAAGTCGCAGGCTCTTCAAGAGCACATTTACTTGTTAGTATGATCATTTTCTGTTTTCCCTTTCTAAGGATTATTTCAATTGGAATTGTCTGGTCTATCATGTTTCATGCATGCCATAGACTCTTTCCTTCTAGGACATTTAACATGAGCATTTGCAACTGATATGTGGGATTGATTTTGGGTTAGCAAATGCTTAAAGCATTTGACTTGAATGGTCTTTTGAATGAAAACCGTACCGATAATAAATTTTTCTTGACAACTTGTTATTTTCCCCTTATGTTAGAAAAACTTAACATATATCCCAATTTAATTGGGTGAATCTATCTTTGTGCATCATAGTATATTTTTTCTTCATATATTGCGCATCAAAAGCTATCAGGCGGAATATATTTAGTTCCTGACCCTAAACCAATCAAGAGTTGGCAAATTAGGGGGTGACTGAATGGTCAATGGTTGGGGAGATTGGGTGGGTGGAAGGAGACAATTAACTTAGAATGTCTCTTATGCAACTTGTTTGGCCTACTTTCATTATGGAAGTCATTTTCCTCATTTTTAAGGAACTTGTTTTCCTATAGACTATTTTCGGAACATTTTGACCAACCAAATATAAGAAAATTGAAAAACATTTTCTAGAAAAATGTTTTCCTCTATACCAAGCACACCCTTAGTCATAATTTGTAGGTCTGATGCATTGAAGTGTTGTTGTATACAATATATCCTATCATAGACCGACACAGAGTTTTGTTCTCATAAGCAATGGTTCAATTATTTATTGAAGGTATTCAATGTCAAACTAGCTCGAATATAAATTAGATTTATCAAGATGAATTGTCTTGATTACACAATCTGAAAACTATGCTTTTAACTCAAACATACACCTTTGTGAATGCCAAAATGCATGTCGACAATAAATGCACATGGTAATCATCTTATAGATGCATCTATTTAAAATATCACATGAGACGTGAATATGCTCACTTTCACTTCTTATCTTTTCCAGGATTTAGGGTATTCATTTCAAATATTAGTTAGTTTAATCAACTTATCATGAGAACGTACAACATAAAAGAATTTTTGAAGAATGTTCTATTTGTTCGATATATGTTGAATACTTAATATGTATATCTTTAGAATTCGAGAACCATATGATTACCATCTATATTTTTTTTTATTTAAGTGTTTTGTATAGTCGCACTTCCATCAAGAAAATATATGAATTGTTATTTTCTTCAAGGAATTAATAAAACATTACCGTAGAAATCATTCAACAAGATACATTTCCTTCTTCCTTAAAATGATATTTTTAAAAACGTAGACACACGTGTCATATTGCAATGACTTCTATACCACAAAAACATGTATATCCTTTTTATTCTATCTCTTCATGAGAAGTTGTGGTGTCTCTTTCATCCACTTCGGGGAATGAAATCTGATTATTTGAATGTGCTTGAAATACCAACCCCCTCGACCTATTTTCAAACTTTAAATAGATAGGACGTCAATTGCTTTGTTGAGCCGCACATGGAATCAAGAGCTCCAAGTGGGCCATTTTTAGTAAGCTAAAGTGGCAATGCGGGATGAACCAAAAGTCGGGTTACGATGCCAAACTGCGCGTTAACCTAGATCCCTCAAAGGGTCTTGGTCGATTAAGACATTAGATCATTATTTTCCTTAAGTAGACGACATTGCTTAAGAGTATTTCTCATATATTTTTCAAACTTTTTTTGCTTTAGGAGAAAATTTAGAAGTTTACTCCTTGGAGAATGTAATTTTAAAATTTTACCACTTCTGGAGTAAATTTCGAAGTTGTACTACTTCGGGAGTAAAGTTCAAAGGTCTGTTACTTCGAGAGTAGATGCCTGATTCTTGTTACTTTGGGACTTAGTTGCAAAGTGTTTACTATTTTGGGATTGATTTTTAGGTTTGTCATACCCCAAACTACCTCCCAGACGTGATTGACACCTAGCACACACCATCGGCCATGTGAACCCAATTACCATACCTTCACCATTAATTCATAACGTTTGATGAATTAAATAAGTATTCAAACAATATGATATATAATTATGAACTCTTGGTATCTCAAAATGTGAATCTAACACTCTTGTGCAAATCCCACGCTAAACCAAGGAGCATCAAAAGGAATCTCAAAAGGACTTGGAATATTAATGATAATGACTCTTTTGAAATCCCCCACAAATAATGCAGTTGTTCACCTCAACAATTAGATCAACCTCGACGACCATTTATTTTGCCAAGCACATGTTCGTCACAACTCAAGCAGACAAAACACATTTTGAAAATGGATTTGAAAATCAAGCACACAAAGCTTAAACTCACTTACCTCAAATTCACAACTCAATCATTCTTTCCATTAGATCATAACTACGATCTCGAGACTCCGGATCACCTCAAACTAACACAAAATGGGTTAAGAATGGTTAGGAACCCTTCGTTGGATGTTTTCTTAATTTTATCACAAGTCAAATTTGTGTTTAAAGATTAACCCAAAAAGTCAACTCGGATTAATGAGTTAGAATTCAAAACCAATAATATTTTGAGCTAGCCATACCTCGTTGGATCCAAGTTTATAATCGAGTTTCAACCCTTGTTGTCAGAATGATGGATCAATTTCCAATTTCATTAACTTTCAAGCTTAGATCTTAATCGTAACTTTATACCTCAAACATATCTCAATATCATCATTGCTTAATTAGTGAATATTATGTCTAATATAAATTATCCGTGTCCCCGAAATAATAATCAAAATGTGTATAAACACAATGCTGAAACAATAGAACTGCATAGCCAACACCTATGGCTTAACCCCTATTTCTCAAAATAATGTTTAATCTCATAATTATTTTCCATATGATATCATCCATCCTAATCATTGCAATATCACGTAGTACTTGAAGCTTTTCTTTTAAATGTGTGAAGGACTATGTTGTTGTTCGCTTGTACTTCCTACTTCTAGTTCCTTTAAGAAACTTGTAATTTTAAGGCTTTGTCCAATAACTGCAAATTAAATTAGTTCTCCAATCTTTCCATAATAAGTACTCATAAAAATTAATTGTTTGGTTATTGCAGTTTTACTACTTTGTAATAAATTTTAGATTTATTACTTTGAGGTTAAATTTAAGATATTTCTTTTTAATTTTTCTACTTCTTCTAGAACACAACCAACATTCTTTTATTAGTGTGACAATAATCATCATCATCGTGCATAAAAGATAATCAAGCTATGCATGAACCAAAGTATTCATATTATTAAATCATCCCACTCATCCATAGATTTCAAATAATGAAATCTTCGATTCACAATATTTATCCAAGATGGCTGAGTCTCTTGCTAATAATGCGTAATAGATATAAAGCAAAAGGAAGAAAATACAGGAGAAACGTAGAGAGATGGGAGAAAGCTTTTTATTTCTCTTGATGTATAAAATACAATGAATGAGAACTCCTTTATTTACAAGGGAAAACTAATTCGATCTCAAAGTAACTAACTCGCAACTATTCTATTAATGTCCCAAAATTTGCCTGAAATTTGAATTATGTAAGCACTCAACTTCTTTAATATTTTTGTTATCCTCAATTTTGTTTATTCGTAACACCTTTAGATTTCTCAAGCTCAAATGGGAAATGCAAATGGAGCTAATTGGAAGAAAGAGGTTTACCAAAAGGTTTTGTTTGCAATGGTATTTTTATTTGCGCAAGATTTTAATAACTGAGGATATTACATACGACTTGCTGAAAATTGATTTTTTTTGCATTAGTTATGATGTGGAATTTGTTTTAATGAATTTTTTTAATGCAGATTAAGCCTACGAAGGAGATGTATCTATTAGAGCTCAAGTATTTATACCTAAAGATTGCTTCTAAAGTCTGGCAGGTTTGTTTTTAGCTAAATTTGCAGATCCCAAGCGAACCATAGTCCTTGATATAATTGTTACTGCATTTTGAGTCTTAACTCTTCTCTTTTACTTCCTTTAATCATCATAATGTCCCACTTATTGATGCTCTCGGATGACTTCTTAGGACATGTCTATACCTTCTTAGGTGATAGAGCCATCTTATACGGCGTCTCATTTTAACGTTTGTGTTCCCTTCACTGAAAGGGATCAAGGCCTCCCTAATTCTTTGGGGCTTGGGCTTTATATATATGACTTTTAAAAAGCACTCATAACAACATTTTGTTGAAACATAGAATGCTGGTTAGTTTGTTTTCTTTTGCTTTTTTTTTTTCTTTGTTTTATTTGATGGTTGAAGGTAACGTATGTTTTCAGTTTTACTATGTTATTTGTCTCTTAATGCCTTTTCTCGAGTTTTCCGGCCTTTTTCTTGGCATGTGAGGGGTACTAAGGGGTCGTTTGATAATTGGTTAAAGTTATGCACATCTTAGTAATGTAGGCTTTAGTTATGAGTGAAACTATGTATTTTATTTTATGTAGATATTCGTTATGTAGAAATTGGTTATTCATGTATTAGTTATTCCACCTTTTACCTTACATAAAATATTATATAGATTCCCAGTAATTATAGATTGTCAAGGAAACGTCGTATTAATTTTATACATGAATTACTTATTTCCTATCTATCTACCAAACATCGTATAAGTTATGTGGAAATTAACGTGGATAACTTGTTTCTTATGCAGGTACCAAACGACCCCTTAAAGCTAAATCCATTCTACACATATAAAACTCTTCTAATCTATCTCAGGTTCTATAGTTCTCTTTCAAAACTCAGTTACATAATTTTTTTTTATTTTCTTTGGATTGTGAAGAAAGGATTTTGATTAGGTCAGAAATTGAGATGGATTGGTATAATTGGATGGCTGCTC</genome_strand>
        <mrna_strand>CTTATTTAGATTTTGTAACTCAGACGCGAAATGGCGATGCAGCTGATTGGCAAGAAGAGGTTTACCAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAATTTCATCATTGTGGTGCCTCCAAATGAGTTTGTCTGAGTCTGGCAGACTGCACAAAGCAACAGCAGACTGCGCAACTGCCAGCCCACAAGATGTCACAGCTTCACCAGCTAACTGATGCTAATGACCTAATGATGAGGCAGCAAATGGGAATGAAAACAGGAGTTTTACAGCAACAGCAGTCAGTTGGATTTCATCATCCGCAAGTGAAGCCGGAAATATCTTCAGCTCAAACCTATCAGGCAGTATCTCCTCAG................................................................................................................................................................................................................GAACAAAACCTACCTGCTTTGGATGAAAGCAAGAACGGTGCAAATGTGTCCTGGAATTTTCAATGAAGCTTTTCCCAATAAATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTGAAGCTCTCATGAGGTTTCATAAGTCGCAGGCTCTTCAAGAGCACATTTACTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGCCTACGAAGGAGATGTATCTATTAGAGCTCAAGTATTTATACCTAAAGATTGCTTCTAAAGTCTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAACGACCCCTTAAAGCTAAATCCATTCTACACATATAAAACTCTTCTAATCTATCTCAG.....................................................................................AAATTGAGATGGATTGGTATAATTGGATGGCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337153" ref_strand="+" ref_description="SGN-E337153 [cTOE-7-N5]">
      <seq>acaaaacctacctgctttggatgaaagcaagaacggtgcaaatgtgtcctggaattttcaatgaagcttttcccaataaatgaggtgcgtgaagctctcatgaggtttcataagtcgcaggctcttcaagagcacatttacttatttctcaagctcaaatgggaaatgcaaatggagctaattggaagaaagaggtttaccaaaagattaagcctacgaaggagatgtatctattagagctcaagtatttatacctaaagattgcttctaaagtctggcaggtaccaaacgaccccttaaagctaaatccattctacacatataaaactcttctaatctatctcangtcagaaattgagatggattggtataattggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="100327" stop="107326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100627" g_stop="100710" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100711" i_stop="102162" i_length="1452">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102163" g_stop="102221" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="143" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="102222" i_stop="105811" i_length="3590">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105812" g_stop="105874" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="206" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105875" i_stop="106008" i_length="134">
            <donor d_prob="0.504" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106009" g_stop="106083" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="281" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106084" i_stop="106848" i_length="765">
            <donor d_prob="0.488" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106849" g_stop="106913" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="346" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="106914" i_stop="106993" i_length="80">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.655" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="106994" g_stop="107026" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="379" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E337153" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100627" e_stop="100710"/>
          <exon e_start="102163" e_stop="102221"/>
          <exon e_start="105812" e_stop="105874"/>
          <exon e_start="106009" e_stop="106083"/>
          <exon e_start="106849" e_stop="106913"/>
          <exon e_start="106994" e_stop="107026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACCTACCTGCTTTGGATGAAAGCAAGAACGGTGCAAATGTGTCCTGGAATTTTCAATGAAGCTTTTCCCAATAAATGAGGTAATCATTTTGTTCTTGTTCGATCTTTATATATCTGTCCTTTTAAATGACTTCTACTGAAAGAGAGAACAAGAACTTGACAACCATGACAAGCTCTTGTCCATTGATTTTTAGAAACTGGAATAAGTCCCAAGTGTGAGAAACGGAGAGGACGAAATAGTGTAAGCAAGGAATAGGTGTTTAATATTTATTTTATATACTTTCAGTCTTTGTTTGCTAGAGTAAATTACATCAAAGAAAGAGAATTCTGACTAGTAAAAAGTTTCACGATGAATAGGATTATTACCCACCACTTAAACAAAGACTAAGAATTATTAGTGTTCCTGGAAAAGAAATAGGATAATTTTAAGCCTGTCCAAGGATAGTGGACTATTTTGAGCCTTTACTCTCATGTTGAGGAATAGATGAGGAGAGATTAGAGAAATATTGAGGCTTATTTAAGAAGGACGAGACATTGTTGGCTGATATTTAAAAAAAATTGACTTATTCGGTGAATATGCAAAATGTTGAAGTTTCTATGGACATAAGATGTCTAGCTAAGTTCGTGAACTCCTCGTGGACATGTGATGATTGACCAAAGAAGAAACACATTTGGTACTTATCCTAATTTCATGCAACAATGGTTTATGTTAGTCAAATGTAGTGTTCGAAGACTAGTTTTATACGAAACTGAACACAACCCTAAATTCAATGAACAAGCTTTAAAAATTAATTTAATTGTTCTTGAACAAACAATGCTTCATGGATTCTTTATACTCAAAAGAATTTTTTCATTGACCAAGCAAGAGAATCTAAAATATAATATGATTTTTGACAGATAAAAGTTGTTTATTAGACCTATAAAGTTGCCTTCGATTTCAACATTATGAGCATTACCAATGTATTATTTTCATGCATCATCACAAAACTTTGAAAGTGATAGTTGATGTGTTCAGGAAAGTGAACATTGGTTTATTTATGTCGTCAACATAAACAAGAAGTACAAGAAATCTCGATGCTGTTTTCTTTATAAAAAAATATAAATAAGAAAAGTCACTATTATATTCTTCGTCGTATGAATATTCACTAAGGTGATTAAGTCACATCCACCTTATTTGATGTTCTCTATAAGGATTATGAGTTTATAGAAACTTGTAAATGCTTCAAGCATTTTGAGTCCTTCGGGAAGTTTCTTTTGATTTTGTCAAGTGACAATATCTGGTATTAAATGTCCGATCCTCTGATGCATCGATTGTTGGTCCAATAAGGTTACACTTATCAAGATGCATGTCATTTCACTTGATAAACATTTCTACACCGGTATGCTTAAATAAACATATAATTTAGATCCTCACATTCTGTTACAATATTATGGGCTATATTGTATCAAATATATCGTCATTGAGTTATCATTTTGTATCAGTTCGAAGTGCGACGTAACTTACTAAGATCTCATTACTTCATTATTTACAGGTGCGTGAAGCTCTCATGAGGTTTCATAAGTCGCAGGCTCTTCAAGAGCACATTTACTTGTTAGTATGATCATTTTCTGTTTTCCCTTTCTAAGGATTATTTCAATTGGAATTGTCTGGTCTATCATGTTTCATGCATGCCATAGACTCTTTCCTTCTAGGACATTTAACATGAGCATTTGCAACTGATATGTGGGATTGATTTTGGGTTAGCAAATGCTTAAAGCATTTGACTTGAATGGTCTTTTGAATGAAAACCGTACCGATAATAAATTTTTCTTGACAACTTGTTATTTTCCCCTTATGTTAGAAAAACTTAACATATATCCCAATTTAATTGGGTGAATCTATCTTTGTGCATCATAGTATATTTTTTCTTCATATATTGCGCATCAAAAGCTATCAGGCGGAATATATTTAGTTCCTGACCCTAAACCAATCAAGAGTTGGCAAATTAGGGGGTGACTGAATGGTCAATGGTTGGGGAGATTGGGTGGGTGGAAGGAGACAATTAACTTAGAATGTCTCTTATGCAACTTGTTTGGCCTACTTTCATTATGGAAGTCATTTTCCTCATTTTTAAGGAACTTGTTTTCCTATAGACTATTTTCGGAACATTTTGACCAACCAAATATAAGAAAATTGAAAAACATTTTCTAGAAAAATGTTTTCCTCTATACCAAGCACACCCTTAGTCATAATTTGTAGGTCTGATGCATTGAAGTGTTGTTGTATACAATATATCCTATCATAGACCGACACAGAGTTTTGTTCTCATAAGCAATGGTTCAATTATTTATTGAAGGTATTCAATGTCAAACTAGCTCGAATATAAATTAGATTTATCAAGATGAATTGTCTTGATTACACAATCTGAAAACTATGCTTTTAACTCAAACATACACCTTTGTGAATGCCAAAATGCATGTCGACAATAAATGCACATGGTAATCATCTTATAGATGCATCTATTTAAAATATCACATGAGACGTGAATATGCTCACTTTCACTTCTTATCTTTTCCAGGATTTAGGGTATTCATTTCAAATATTAGTTAGTTTAATCAACTTATCATGAGAACGTACAACATAAAAGAATTTTTGAAGAATGTTCTATTTGTTCGATATATGTTGAATACTTAATATGTATATCTTTAGAATTCGAGAACCATATGATTACCATCTATATTTTTTTTTATTTAAGTGTTTTGTATAGTCGCACTTCCATCAAGAAAATATATGAATTGTTATTTTCTTCAAGGAATTAATAAAACATTACCGTAGAAATCATTCAACAAGATACATTTCCTTCTTCCTTAAAATGATATTTTTAAAAACGTAGACACACGTGTCATATTGCAATGACTTCTATACCACAAAAACATGTATATCCTTTTTATTCTATCTCTTCATGAGAAGTTGTGGTGTCTCTTTCATCCACTTCGGGGAATGAAATCTGATTATTTGAATGTGCTTGAAATACCAACCCCCTCGACCTATTTTCAAACTTTAAATAGATAGGACGTCAATTGCTTTGTTGAGCCGCACATGGAATCAAGAGCTCCAAGTGGGCCATTTTTAGTAAGCTAAAGTGGCAATGCGGGATGAACCAAAAGTCGGGTTACGATGCCAAACTGCGCGTTAACCTAGATCCCTCAAAGGGTCTTGGTCGATTAAGACATTAGATCATTATTTTCCTTAAGTAGACGACATTGCTTAAGAGTATTTCTCATATATTTTTCAAACTTTTTTTGCTTTAGGAGAAAATTTAGAAGTTTACTCCTTGGAGAATGTAATTTTAAAATTTTACCACTTCTGGAGTAAATTTCGAAGTTGTACTACTTCGGGAGTAAAGTTCAAAGGTCTGTTACTTCGAGAGTAGATGCCTGATTCTTGTTACTTTGGGACTTAGTTGCAAAGTGTTTACTATTTTGGGATTGATTTTTAGGTTTGTCATACCCCAAACTACCTCCCAGACGTGATTGACACCTAGCACACACCATCGGCCATGTGAACCCAATTACCATACCTTCACCATTAATTCATAACGTTTGATGAATTAAATAAGTATTCAAACAATATGATATATAATTATGAACTCTTGGTATCTCAAAATGTGAATCTAACACTCTTGTGCAAATCCCACGCTAAACCAAGGAGCATCAAAAGGAATCTCAAAAGGACTTGGAATATTAATGATAATGACTCTTTTGAAATCCCCCACAAATAATGCAGTTGTTCACCTCAACAATTAGATCAACCTCGACGACCATTTATTTTGCCAAGCACATGTTCGTCACAACTCAAGCAGACAAAACACATTTTGAAAATGGATTTGAAAATCAAGCACACAAAGCTTAAACTCACTTACCTCAAATTCACAACTCAATCATTCTTTCCATTAGATCATAACTACGATCTCGAGACTCCGGATCACCTCAAACTAACACAAAATGGGTTAAGAATGGTTAGGAACCCTTCGTTGGATGTTTTCTTAATTTTATCACAAGTCAAATTTGTGTTTAAAGATTAACCCAAAAAGTCAACTCGGATTAATGAGTTAGAATTCAAAACCAATAATATTTTGAGCTAGCCATACCTCGTTGGATCCAAGTTTATAATCGAGTTTCAACCCTTGTTGTCAGAATGATGGATCAATTTCCAATTTCATTAACTTTCAAGCTTAGATCTTAATCGTAACTTTATACCTCAAACATATCTCAATATCATCATTGCTTAATTAGTGAATATTATGTCTAATATAAATTATCCGTGTCCCCGAAATAATAATCAAAATGTGTATAAACACAATGCTGAAACAATAGAACTGCATAGCCAACACCTATGGCTTAACCCCTATTTCTCAAAATAATGTTTAATCTCATAATTATTTTCCATATGATATCATCCATCCTAATCATTGCAATATCACGTAGTACTTGAAGCTTTTCTTTTAAATGTGTGAAGGACTATGTTGTTGTTCGCTTGTACTTCCTACTTCTAGTTCCTTTAAGAAACTTGTAATTTTAAGGCTTTGTCCAATAACTGCAAATTAAATTAGTTCTCCAATCTTTCCATAATAAGTACTCATAAAAATTAATTGTTTGGTTATTGCAGTTTTACTACTTTGTAATAAATTTTAGATTTATTACTTTGAGGTTAAATTTAAGATATTTCTTTTTAATTTTTCTACTTCTTCTAGAACACAACCAACATTCTTTTATTAGTGTGACAATAATCATCATCATCGTGCATAAAAGATAATCAAGCTATGCATGAACCAAAGTATTCATATTATTAAATCATCCCACTCATCCATAGATTTCAAATAATGAAATCTTCGATTCACAATATTTATCCAAGATGGCTGAGTCTCTTGCTAATAATGCGTAATAGATATAAAGCAAAAGGAAGAAAATACAGGAGAAACGTAGAGAGATGGGAGAAAGCTTTTTATTTCTCTTGATGTATAAAATACAATGAATGAGAACTCCTTTATTTACAAGGGAAAACTAATTCGATCTCAAAGTAACTAACTCGCAACTATTCTATTAATGTCCCAAAATTTGCCTGAAATTTGAATTATGTAAGCACTCAACTTCTTTAATATTTTTGTTATCCTCAATTTTGTTTATTCGTAACACCTTTAGATTTCTCAAGCTCAAATGGGAAATGCAAATGGAGCTAATTGGAAGAAAGAGGTTTACCAAAAGGTTTTGTTTGCAATGGTATTTTTATTTGCGCAAGATTTTAATAACTGAGGATATTACATACGACTTGCTGAAAATTGATTTTTTTTGCATTAGTTATGATGTGGAATTTGTTTTAATGAATTTTTTTAATGCAGATTAAGCCTACGAAGGAGATGTATCTATTAGAGCTCAAGTATTTATACCTAAAGATTGCTTCTAAAGTCTGGCAGGTTTGTTTTTAGCTAAATTTGCAGATCCCAAGCGAACCATAGTCCTTGATATAATTGTTACTGCATTTTGAGTCTTAACTCTTCTCTTTTACTTCCTTTAATCATCATAATGTCCCACTTATTGATGCTCTCGGATGACTTCTTAGGACATGTCTATACCTTCTTAGGTGATAGAGCCATCTTATACGGCGTCTCATTTTAACGTTTGTGTTCCCTTCACTGAAAGGGATCAAGGCCTCCCTAATTCTTTGGGGCTTGGGCTTTATATATATGACTTTTAAAAAGCACTCATAACAACATTTTGTTGAAACATAGAATGCTGGTTAGTTTGTTTTCTTTTGCTTTTTTTTTTTCTTTGTTTTATTTGATGGTTGAAGGTAACGTATGTTTTCAGTTTTACTATGTTATTTGTCTCTTAATGCCTTTTCTCGAGTTTTCCGGCCTTTTTCTTGGCATGTGAGGGGTACTAAGGGGTCGTTTGATAATTGGTTAAAGTTATGCACATCTTAGTAATGTAGGCTTTAGTTATGAGTGAAACTATGTATTTTATTTTATGTAGATATTCGTTATGTAGAAATTGGTTATTCATGTATTAGTTATTCCACCTTTTACCTTACATAAAATATTATATAGATTCCCAGTAATTATAGATTGTCAAGGAAACGTCGTATTAATTTTATACATGAATTACTTATTTCCTATCTATCTACCAAACATCGTATAAGTTATGTGGAAATTAACGTGGATAACTTGTTTCTTATGCAGGTACCAAACGACCCCTTAAAGCTAAATCCATTCTACACATATAAAACTCTTCTAATCTATCTCAGGTTCTATAGTTCTCTTTCAAAACTCAGTTACATAATTTTTTTTTATTTTCTTTGGATTGTGAAGAAAGGATTTTGATTAGGTCAGAAATTGAGATGGATTGGTATAATTGGAT</genome_strand>
        <mrna_strand>ACAAAACCTACCTGCTTTGGATGAAAGCAAGAACGGTGCAAATGTGTCCTGGAATTTTCAATGAAGCTTTTCCCAATAAATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTGAAGCTCTCATGAGGTTTCATAAGTCGCAGGCTCTTCAAGAGCACATTTACTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTCAAGCTCAAATGGGAAATGCAAATGGAGCTAATTGGAAGAAAGAGGTTTACCAAAAG......................................................................................................................................ATTAAGCCTACGAAGGAGATGTATCTATTAGAGCTCAAGTATTTATACCTAAAGATTGCTTCTAAAGTCTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAAACGACCCCTTAAAGCTAAATCCATTCTACACATATAAAACTCTTCTAATCTATCTCAN................................................................................GTCAGAAATTGAGATGGATTGGTATAATTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315672" ref_strand="+" ref_description="SGN-E315672 [cTOA-22-J18]">
      <seq>ctgctagtagtggtcagaatgcccttggtccaggatcgcacagtatgcaatcccaagtcaacagccaagcacagcaacttcctgtacctatggtggccaatcaaactcaaacacgacaaccactgttgcagcaaaaccttcagaacaatatggcatcgactgggctgcaaaattctgctagcttggctccttcacttccttctgtgagtaatttgacgcagggtaccatgccaaatgtcgtgggccagaattcaaatttgcaaaccatgcaaaacatgccaaatgttggtcaaaacttggtaggaaatgccattgggcaaggcatgcctcctaatatggttgctaattctcagaggcagatgcagggaagacaacaacaggttgcttctgcacctgcccaatcccttgcaattggtactcctgggatatcagcctcacctttgcttgctgagtttactcctctagatggtacacatgccaatgtctcagctgctgttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="150014" stop="156114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="150314" g_stop="150346" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150347" i_stop="150819" i_length="473">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150820" g_stop="151166" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="380" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="151167" i_stop="155693" i_length="4527">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155694" g_stop="155814" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="501" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E315672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="150314" e_stop="150346"/>
          <exon e_start="150820" e_stop="151166"/>
          <exon e_start="155694" e_stop="155814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTAGTAGTGGTCAGAATGCCCTTGGTCCAGGTGAACAATGAAATCTCATGTGCTCTATTTCAAATAGGGAAAACTTGTATGACAGGACGTTTTGTGTAAACCTAATTACTTCGTTCTGCTGTTGAAAAGTTTGTTCTCTGTAGCTAATAAGTGTAAAGGAAATTTTAGATGCTTGAACCATTGTGCTAATCTTTGAGTGATCTATAATTTTGGTGACTAGCCCTAATAAGTATTGTTTGTGCTCTAGGTCAGAGTCCTAGCCCTGCTCTTTCTCTATATCCAGACTATTCTTGTTGTTTATTTGTCTAATAAGTAACTTAGTCAAATTTCTCTTTTGTATTTTCGAATCAGTTTTCACAAAGCTATGACTTCTGTTTCTTGTATCTTAAACTAAAAAATACGTGTTTACTTTTGCTGCTTGTTTGTATTTTATTTTAATGTTATTATGTTTGCTGGTTATTTGATAGCATCTTGACTGGCTTCTTTTTTATTCATTTCTGTAGGATCGCACAGTATGCAATCCCAAGTCAACAGCCAAGCACAGCAACTTCCTGTACCTATGGTGGCCAATCAAACTCAAACACGACAACCACTGTTGCAGCAAAACCTTCAGAACAATATGGCATCGACTGGGCTGCAAAATTCTGCTAGCTTGGCTCCTTCACTTCCTTCTGTGAGTAATTTGACGCAGGGTACCATGCCAAATGTCGTGGGCCAGAATTCAAATTTGCAAACCATGCAAAACATGCCAAATGTTGGTCAAAACTTGGTAGGAAATGCCATTGGGCAAGGCATGCCTCCTAATATGGTTGCTAATTCTCAGAGGCAGATGCAGGGAAGACAACAACAGGTTGTTTCTCAACAGCAACAGCAGCAGTCCCAGACAACACAGCAATATATGTACCAGCAGCAACTGCATCAGCATCAAATGATGAAGCAGAAATTTCAGCCGGGAAGCACATCACAGTCCTTGATGCAATCTCACATGCAGCAACAGCAGCAGCCGCAGGAGCAGCAGCAACAACTACCGCAGCAGCAACAAAACCTTCTACAACCTACTCAGACACAACCTTCTCAGCAAGCTATGATGCAACCTTCTTCAATACAATCAACTTCTTTGTCCAACCTTCAGCAGAGTCAACAGTCGACTGTTCAACAGTCAACTCAATCTGTACTTCACCAACGGCAACAATCAGTTATGAGACAGCAGCAGGCTCCCATGCTTCATCAACAGCAATCGTCAATGCTACAGCCACCAATTTTACCAGCTCAACAGCACCAACAACAACAACAACAGCAGCAGCTGATTGCACAACAGACAAATGTTGCAAATCTCCAGCAGAACCAATTGATGAGTCAACAGAATGCAATGCCTGATGTGCAGCAGAGGCTAGTGGGCCAACAGAACAACTATATGCATCAGCAAAACAACTTTCAAAATATGCATCAGCAGCAGTTGGGCTCTCAAAGTAGTATTGCTGGGGTCCAGCAACAACAGCTGTCTGGAAGTCAACAACCTGGTAACTCTGGCTTGACATCTAATCAGCACCCTATTCATTTGATGCAACAACCAAAAGTTCCTGTACAACAACAAATGCTGCAGAGTACTACAACCTTGTTACCAAATCAAGGTCAACAATCGCAGTCGCAGCCAGCACAACAGCAAATGATGTCTCAAAGTCAATCACAACCAGGACAGTTACAGCCACCTTTGGGTTTGCAGCAACAGGCGAATCAATTGCAAAGGGAGATGCAACAGAGGCTTCAACCATCAGCCCCCTTGCTTCAACAGCAAAATGTAATGGAACAGCAGAAGCAGCTATATCAATCACAAAGAGTCGCACCTGAAGCCTCTTCAAGTATGTATTTTTCTTAATCAAAGCTTTCAATTAGGTCTCATAAATCACTCTGTAGCAGTTTGTCATTCTTAGATATTTCCACCTTTCATGCCTTATATGTGTGAAGGTATAGGACTTCTACACTATGTTAACCACTGGTTTACATTTTCTTTATGTAAAAATGACTAGTACTTTCAGGCAAGTTTTGGGATATGAAAGGTGGTGGATATTTTAGATAATATTCATACTTATCTGAAATATCCAACACCTTTCATATCCCAAAATTTGCCTGAAATTTTAATGCTGTAAGGTGTCAAGTCCTTCAATATTTTTGTGCTATCCTTAACTTTTGGTTTATTTGTAGCATCTTTAGATTCTACAGCTCAGACGGGAAATGCAAATGCAGCTGATTGGCAGGAGGAGGTTTACCAAAAGGTATTGTTTTCGATGGTATTTCTATCTGCACGGCATGTTGAGAACTGAGGAAATTACTGGAAATTGTTGTTTTGGAAATTGACAAGTGAACTGTATTTTGATAAATTGACTGGTTGCAACAATATAAGAAGTAGCTGAATGCTGTGAAATATTTTTTGTGATTGATGGATTAATAGAGGAGGTTTATCAAAATAAGTATTCAGCAAATTCATGGTCATATCCATTCCCGCAAAGCACTTTTACGGTGTTCCAATTCGTAGAAGCACTATAGAATTAAGGTTATTGCAGCTTACTTGTAAGAAATTGATTTATTCTCAATTGAGAAGTGAGGTACAACAACTATTACGCCTCAATGTTAATCAAATTAGCGTCTGTTATATGAATTATTGTTGTCTTATGTTGCTTCATTTGAGCCCCTCTCAATCCAAAATTATAGCACTTGAATTTCCTTACACTTTCTACTGGCATAATTGGGAAGTGAAGTAAATAAATTGGTTGGTTACATTTATTTTTTGATGAAGTGATTAGAAATAGTTGAATGTTGTTATGTATTGTCTGAATTCACGAGGTGTGATATGTCCGTAAGTTTGGGTCAGGGTCCTCATAATATGTACCTAATTTGTTTTATTCCATGGAAACTAAAGAATTAATTGCTACATTAAAGGGTAAAACTATTCATGCAGGAAGTATATACTTGAATATATGGCTTAAGAAAATATTGTTCTTTGTGAAAAGGCACATCATCTGTATTAGTTGGTAACGGTTTTTGTTTCTGTTTTTTGGGATATCACGAGAAATTCATTGTTGCCTGTTTTGGAATGTGGATGATAATGGGTCTGTCCCTCTAGCTTTTTGTACTTAAATACCTGACTTGGTTTACTAGCTAGAAGTGTAAGTTGGAATATTTTGTGTTCGCCAAGAATAAAGATATAACATCAACATGCCTTTTTACTTGTGAAGTAAACTACATTGTTGTTATTCATTGTTTACCCTCATTTTGCTTTACTGGTAATAAAGGTGTAAAGTGAAAAAAAATGATGTTTTCACACTAAACAATATTATATCTCCCAGACAATTATAGAAAAGTATATTCTAATTCCTCCTGGTTGGGCTGGTCTATTATCACATCTTGGAACTAGACCCTTGCTGTGAGCACCGAGCAGAAACGTGTACCAAGAAGCTGAAGGAAGCAAAGTTCAGTTGTTTATTTTTTCATTCACATGTTGAATCATGCAAAATGGATTCTTTAATGAGTTTTAGTCTTCCGCTTCCACTTCACTTTTAACTTTTTATCTGGAAGGTTCTTTCATGAGGATTCTCTAGTTTGTTCTCTACTGTATCGGAAAGTTGATCTAATTATTACCTCTCCATATGGGAATGCAGTCTTGACATTTGCGCAATTCTGAGCTGATGCAAATTTTTAATGCAGATAAAGTCTATGAAGGAGTCGTACTTAGCAGAGCTCAATGATCTATACCACAAAATTGCTTCTAAAGTGCAACAGGTATGTCATCAACATTTTAATCCATTCTTATCATTTTTGGAGCAATTCTACTAGCTATGTATGGTGCAGCATGTTTGCCTGTGTTGAAGCGTTGTGTATGATTGTAAAGTAGAGGTGGAGGACACCATAAAATGAGCTATTTACACATATCTAGGTGAATACTGTGATGTAGATGCCACTTTTATGTTCCCTTGGGGAAGGGTTCAAGGCCTCCCTAATTCTTCGGGCAAGGGCTTGATTTGTCTAAATTTTAAGAGCGCTTAAGTCAGCATTCTGTTGAATTGGGCACCTGGCCACTATGTTATTTGTCTCTTTATGTTGGTTTTAAGTTTTTCTCCCTTTTTCTTTGCTGTGGGAGGGAGGTGTACTTGAAGCATGAATTTTAAAAGTTTGCAAAGGGCAAGAAACAAGACTTTGACTAAACTGATTTTTTTTTCCTGATTTTAAGCATGATTCTCTTCCTCAGCGTCCTCAAAATGAGCAAATTGAAAAGCTCAAGATGTTCAAGATCACGCTGGAACGCATTGTGCTTTTCTTGCGGCTTAACAAGCAGGATATTCAACTTTCTCACAAGGAAAAGTTGGCTTCGGTTGAGAAGCACATAAGTTTCTTTCTTAGTTCCAATAGGCCGCGCAGCAAGCCTTCTTCTTCTCCACTGCAGGGACAACTTCCTCAGTCTTCCATGCAGCTTCAGCAACCACCATCTCTTGATGGTCAATCTAATCCGTCGATGCAACCCTCACAGGGTTCCATGGCAGCAATGCCTCAGAATAATCTCACCAACTTGCAACATAATACCTTGTCTGGTGTACCGACAATTTCCAACTCCCAGCAGCACATGATAAATACAGTACAGCCTGGTTCCACTGTGGATTTGGGACAGGGTAATTCATTGAACTCACTGCAGCAGGTGGCTACTGGCTCTTTACAACAGAATCCTGTTAACAGTCCTCAACAAGTTAACATGAGCTCATTAAGCTCACAAAGTGGAACAAACCCCGTACAGGCAAACCTCGGTTCCCTACAGCAAAATTCAAACGCCCTGCAACAGTCACTTCCTAAGCAGCACGAGCAGCAAATGTTGCAGAACCAGCAATTAAGACAGCAATACCACCATAGGCATATGCAGCAGCAACTTTTTCAAAGACAGCAGATAATACAACAGCAGCAAGCGAAGCAACAGCAGACCACGCTGTTGCCAACCCACCAGATGTCTCAGCTTCAACAGATGACTGATGCTAATGACCTAAAGATAAGGCAGCAAATGGGGATAAAACCAGGAGTTTTACAGCAACAGTCAGTTGGCCAGCGTGTTGGATCTCATCATCCCCAATTGAAGCCAGGAATATCTTCACCTCAACTCCATCAAGCACTGTCTCCTCAGGTTACCCAACATCCTTCTCCACAAATTGACCAACAAAATATGTTGGCGTCTCTTACAAAAGCTGGGACTCCTCTCCAATCCGCAAGCTCACCGTTTGTTGTCCCTTCTCCTTCAACTCCCTTGGCTCCATCTCCAATGCCGGGAGATTCTGAAAAAGTTGGTGCTGGCCTTGGATCACATACCACTGCTGGAAATATAATGCATCAGCAAGCTACTGTTGCTTCTGCACCTGCCCAATCCCTTGCAATTGGTACTCCTGGGATATCAGCCTCACCTTTGCTTGCTGAGTTTACTCCTCTAGATGGTACACATGCCAATGTCTCAGCTGCTGTTCCTG</genome_strand>
        <mrna_strand>CTGCTAGTAGTGGTCAGAATGCCCTTGGTCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGCACAGTATGCAATCCCAAGTCAACAGCCAAGCACAGCAACTTCCTGTACCTATGGTGGCCAATCAAACTCAAACACGACAACCACTGTTGCAGCAAAACCTTCAGAACAATATGGCATCGACTGGGCTGCAAAATTCTGCTAGCTTGGCTCCTTCACTTCCTTCTGTGAGTAATTTGACGCAGGGTACCATGCCAAATGTCGTGGGCCAGAATTCAAATTTGCAAACCATGCAAAACATGCCAAATGTTGGTCAAAACTTGGTAGGAAATGCCATTGGGCAAGGCATGCCTCCTAATATGGTTGCTAATTCTCAGAGGCAGATGCAGGGAAGACAACAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCTGCACCTGCCCAATCCCTTGCAATTGGTACTCCTGGGATATCAGCCTCACCTTTGCTTGCTGAGTTTACTCCTCTAGATGGTACACATGCCAATGTCTCAGCTGCTGTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478348" ref_strand="+" ref_description="SGN-E478348 [cSTD-4-A6]">
      <seq>tggcagcaatgccgcagaataatctcaccaacttgcaacataataccttgtctggcgtaccgacaatttccaactcccagcaacacatgataaatacagtacagcctggttccactgtggatttgggacagggtaattcattgaactcactgcagcaggtggctactggctctttacaacagaatcctgttaacagtcctcaacaagttaacatgagctcattaggctcacaaagtggaacaaaccccgtacaggcaaacctcggttccctacagcaaaattcaaacgccctgcaacagtcacttcctaagcagcacgagcagcaaatgttgcagaaccagcaattaagacagcaataccaccataggcatatgcagcagcaactttttcaaagacagcagatattacaacagcagcaagcgaagcaacagcagaccacgctattgccaacccaccagatgtctcagcttcaacagatgactgatgctaatgacctaaagataaggcagcaaatggggataaaaacaggagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="154546" stop="155680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="154846" g_stop="155380" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E478348" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="154846" e_stop="155380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAGCAATGCCTCAGAATAATCTCACCAACTTGCAACATAATACCTTGTCTGGTGTACCGACAATTTCCAACTCCCAGCAGCACATGATAAATACAGTACAGCCTGGTTCCACTGTGGATTTGGGACAGGGTAATTCATTGAACTCACTGCAGCAGGTGGCTACTGGCTCTTTACAACAGAATCCTGTTAACAGTCCTCAACAAGTTAACATGAGCTCATTAAGCTCACAAAGTGGAACAAACCCCGTACAGGCAAACCTCGGTTCCCTACAGCAAAATTCAAACGCCCTGCAACAGTCACTTCCTAAGCAGCACGAGCAGCAAATGTTGCAGAACCAGCAATTAAGACAGCAATACCACCATAGGCATATGCAGCAGCAACTTTTTCAAAGACAGCAGATAATACAACAGCAGCAAGCGAAGCAACAGCAGACCACGCTGTTGCCAACCCACCAGATGTCTCAGCTTCAACAGATGACTGATGCTAATGACCTAAAGATAAGGCAGCAAATGGGGATAAAACCAGGAGTTTT</genome_strand>
        <mrna_strand>TGGCAGCAATGCCGCAGAATAATCTCACCAACTTGCAACATAATACCTTGTCTGGCGTACCGACAATTTCCAACTCCCAGCAACACATGATAAATACAGTACAGCCTGGTTCCACTGTGGATTTGGGACAGGGTAATTCATTGAACTCACTGCAGCAGGTGGCTACTGGCTCTTTACAACAGAATCCTGTTAACAGTCCTCAACAAGTTAACATGAGCTCATTAGGCTCACAAAGTGGAACAAACCCCGTACAGGCAAACCTCGGTTCCCTACAGCAAAATTCAAACGCCCTGCAACAGTCACTTCCTAAGCAGCACGAGCAGCAAATGTTGCAGAACCAGCAATTAAGACAGCAATACCACCATAGGCATATGCAGCAGCAACTTTTTCAAAGACAGCAGATATTACAACAGCAGCAAGCGAAGCAACAGCAGACCACGCTATTGCCAACCCACCAGATGTCTCAGCTTCAACAGATGACTGATGCTAATGACCTAAAGATAAGGCAGCAAATGGGGATAAAAACAGGAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703234" ref_strand="+" ref_description="SGN-E703234 [FA20DG05]">
      <seq>cgtcagttcaagacatctattcagttgtcagtatgaatgatagaatagcaggatctgctccaggaaatgggtcaagagcagctgttggcgaagatttggttgccatgaccaaatgtcgtctccaagcgagaaactactttacgcaggatggacctacaggaacaaagaaaatgaagcgatatacaacttccaacgttgtgtcgtcaagcagcagtttgaatgatagtttctggcaggtgaattattctgaaacacctgagttagagtcaacagcaacatccaatgccaaaagacctaaaatagaggttaatatagcactggttgaagagatacagaaaatcaatcggcaacttatcgacactgttgtagaaattagtgacgaaggtgttgatccaagtgctcttgctgctgcaacggagggtggtgaaggcactactgttaagtgttctttcactgccgttgcattgagtccaaacttaaaagcactgtatgcttcagcgcagatgtctccaattcagcctttgagattgctcgttccagttaattatccaaactgctgtccgattttgttggacaagtttccagttgaagttagtaaagagtatgaagatctatccacaaaggccaagtcaaggtttagtgtctccctgcgaagtctttcacagccaatgtctctaaaagacatagtcaagacttgggatgtttgtgctcgtgctgtaatttgtgaatatgcacaacaaagtggaggaggaaccttcagctcaaagtatgggtcttgggagaattgttcaactgcagcatgatcaaagatggaattatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="155677" stop="159015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155977" g_stop="156281" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156282" i_stop="157738" i_length="1457">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="157739" g_stop="157939" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="506" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="157940" i_stop="158067" i_length="128">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="158068" g_stop="158156" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="595" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="158157" i_stop="158488" i_length="332">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="158489" g_stop="158715" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="822" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E703234" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155977" e_stop="156281"/>
          <exon e_start="157739" e_stop="157939"/>
          <exon e_start="158068" e_stop="158156"/>
          <exon e_start="158489" e_stop="158715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCAGTTCAAGACATCTATTCAGTTGTCAGTATGAATGATAGAATAGCAGGATCTGCTCCAGGAAATGGGTCAAGAGCAGCTGTTGGCGAAGATTTGGTTGCCATGACCAAATGTCGTCTCCAAGCGAGAAACTACTTTACGCAGGATGGACCTACAGGAACAAAGAAAATGAAGCGATATACAACTTCCAACGTTGTGTCGTCAAGCAGCAGTTTGAATGATAGTTTCTGGCAGGTGAATTATTCTGAAACACCTGAGTTAGAGTCAACAGCAACATCCAATGCCAAAAGACCTAAAATAGAGGTAATTTTCTGCTGCCTACTTACAGGATAAAAGTACAAAACTGCACGTCCAAACATGAGAGCTCCGTGGTAGACTATATTGGTTCTTAAAAGAAAAAGGAGGTCCATTCAGGTGCATTTTAGAGTTAAAAAAGTAAAAACTGATCTTTGTCCATGACTGCTAGAGAGAGAGTAGAATGACCAAATGCAATATGGTGGAATATTTCTTGAAGCTTCAGCTTGCATGCAAACTGAAACTCGACTCAGAGTGGTTTTTAACAATCATTCCTTGTGCCTGCTCTTTCATTTTTATTGATTATGTTTCTGCAACTGGAACATCATCAACCCCAAACTACCACTTATAGTTCTGTTCTGAAAACTTTGATGGCTATGATAGAATATTGTATGGAAAAATCAAACATTACTTTATGTGAACGAGACATGAGTTTTACTTCTTTAGTACTCTTTCAGCTTGTGAGTATGTCTAAATAATCTGAACTAAGTATAAGACGACTGTCTAGAATAAAGACAAATGCATTTTATTGAATGCTATATGCAACCTGAGACTTTCAATTGGCTGCTCAGTCTTTGTACCAGACTGTCATTCAGTGTCTACTTATTCAACATATGATAATGCCCAATCCCTACCACAAACTTCCCGGCTCTTAAGTGTCCCTCAGCCTTACTGTGCCTGAGCAGCACTCAGTACAAATCTATACGGAAACAATAAAAATACGCCTTCTTTCTATATGGTTTCAATATTATCCCTTTTGTAGCAACTAGCGTGTGAATATATTCTAGTGGTGAACTAAAACCCTATCTATGAACTATTTTGACTTGAATTCCCAACTGCTCCTCAATTTATTGCTAGGCTCTTTAGCATTTAGATTGACCCAAAACACTTGGTCCTTGCATTTTCATATTGGGTTTTTTTTATGCCTGGATTCACCCTACCTTTTTTGTGTTACTATAAACAATGTGAATCACTTGAATCCCACCTAATCATTTGATAGAGTTTCGCATTTCCAGACGAGTAAATTTGTTCAACAGGAAAAGCAGAAATGCTAAGTGAAAACATTCCAAGCTTTGGCAGGATACAGGGCAATAGGCATTATAATTTTATAAGACTCGAGAATATAAAGCAGCTTTGCTTCTAGGCAGCATGTGAACCAACATTCTGGAATGGTGTTTTTATTCCGTAAAGCTTTGCATTTATGGGAAAATGAGTTATTTTTGTTATTTTGTTTGTCACATGGTTGCGTTTCATCCTCTCTTTTTTAAATGATCAGACATCCAATGTTTGTTGATGTAAGATAAGAGTGTTTGATCACAAAAATGTTATCTTGTCCAGATGCTGATTTCCTTGATCTTGCATTCAAATTGATGTTTTGATCTTTGACAAGGAAATTGCTTTACTTGTCAACTTTTGGTTTCTCCAGCTTTACCTTGTGGATAACAGTAATTAGTACTTTATTGTAGGTTAATATAGCACTGGTTGAAGAGATACAGAAAATCAATCGGCAACTTATCGACACTGTTGTAGAAATTAGTGACGAAGGTGTTGATCCAAGTGCTCTTGCTGCTGCAACGGAGGGTGGTGAAGGCACTACTGTTAAGTGTTCTTTCACTGCCGTTGCATTGAGTCCAAACTTAAAAGCACTATATGCTTCAGCGCAGATGGTAAGATATTGATCTTCATATACTGAACTTGTGTCATCAACTACTTATCAAAAAAAAGAAAATCTGTCATTAACTCTTTTACATTTTTTGTTTCATTGGTTGAATGATGGTATTTTACTTCTGTGCAGTCTCCAATTCAGCCTTTGAGATTGCTCGTTCCAGTTAATTATCCAAACTGCTGTCCGATTTTGTTGGACAAGTTTCCAGTTGAAGTTAGGTGAGTAAATTTGGCAATCTTCTTGATAAGAGCAATTATAGTCCTCGTTATAAATTAAAAAAAGTAAGAGCAGCTATAACATATGAATCAAAATAGCATTAATAGATCTGATTTTTTGCCGTATTCATTATACCTTGTTGATTTGTGAAAAAAGGTCTTACAATTTGAATTCTCTAATAGTCAATCATAAAAGATTTTGTACAAGTGCCTTTTGATCTGCGTTAAGATTATCAACTAGGTTTCGAAAATCTCCTTATACAATCTTATAGTCTCCACTTTTAACTACTATGTGATGCATTTGAAAGCTGTGTTTCAACTATTTTCTTCTGCAGTAAAGAGTATGAAGATCTATCCACAAAGGCCAAGTCAAGGTTTAGTGTCTCCCTGCGAAGTCTTTCACAGCCAATGTCTCTAAAAGACATAGTCAAGACTTGGGATGTTTGTGCTCGTGCTGTAATTTGTGAATATGCACAACAAAGTGGAGGAGGAACCTTCAGCTCAAAGTATGGGTCTTGGGAGAATTGTTCAACTGCAGCATGATCAAAGACGGAATTATGAG</genome_strand>
        <mrna_strand>CGTCAGTTCAAGACATCTATTCAGTTGTCAGTATGAATGATAGAATAGCAGGATCTGCTCCAGGAAATGGGTCAAGAGCAGCTGTTGGCGAAGATTTGGTTGCCATGACCAAATGTCGTCTCCAAGCGAGAAACTACTTTACGCAGGATGGACCTACAGGAACAAAGAAAATGAAGCGATATACAACTTCCAACGTTGTGTCGTCAAGCAGCAGTTTGAATGATAGTTTCTGGCAGGTGAATTATTCTGAAACACCTGAGTTAGAGTCAACAGCAACATCCAATGCCAAAAGACCTAAAATAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATATAGCACTGGTTGAAGAGATACAGAAAATCAATCGGCAACTTATCGACACTGTTGTAGAAATTAGTGACGAAGGTGTTGATCCAAGTGCTCTTGCTGCTGCAACGGAGGGTGGTGAAGGCACTACTGTTAAGTGTTCTTTCACTGCCGTTGCATTGAGTCCAAACTTAAAAGCACTGTATGCTTCAGCGCAGATG................................................................................................................................TCTCCAATTCAGCCTTTGAGATTGCTCGTTCCAGTTAATTATCCAAACTGCTGTCCGATTTTGTTGGACAAGTTTCCAGTTGAAGTTAG............................................................................................................................................................................................................................................................................................................................................TAAAGAGTATGAAGATCTATCCACAAAGGCCAAGTCAAGGTTTAGTGTCTCCCTGCGAAGTCTTTCACAGCCAATGTCTCTAAAAGACATAGTCAAGACTTGGGATGTTTGTGCTCGTGCTGTAATTTGTGAATATGCACAACAAAGTGGAGGAGGAACCTTCAGCTCAAAGTATGGGTCTTGGGAGAATTGTTCAACTGCAGCATGATCAAAGATGGAATTATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698710" ref_strand="+" ref_description="SGN-E698710 [FA07BD11]">
      <seq>agatttggttgccatgacccaatgtcgtctccaagcgagaaactactttacgcaggatggacctacaggaacaaagaaaatgaagcgatatacaacttccaacgttgtgtcgtcaagcagcagtttgaatgatagtttctggcaggtgaattattctgaaacacctgagttagagtcaacagcaacatccaatgccaaaagacctaaaatagaggttaatatagcactggttgaagagatacagaaaatcaatcggcaacttatcgacactgttgtagaaattagtgacgaaggtgttgatccaagtgctcttgctgctgcaacggagggtggtgaaggcactactgttaagtgttctttcactgccgttgcattgagtccaaacttaaaagcactgtatgcttcagcgcagatgtctccaattcagcctttgagattgctcgttccagttaattatccaaactgctgtccgattttgttggacaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="155768" stop="158440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156068" g_stop="156281" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156282" i_stop="157738" i_length="1457">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="157739" g_stop="157939" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="415" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="157940" i_stop="158067" i_length="128">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="158068" g_stop="158140" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="488" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E698710" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156068" e_stop="156281"/>
          <exon e_start="157739" e_stop="157939"/>
          <exon e_start="158068" e_stop="158140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGGTTGCCATGACCAAATGTCGTCTCCAAGCGAGAAACTACTTTACGCAGGATGGACCTACAGGAACAAAGAAAATGAAGCGATATACAACTTCCAACGTTGTGTCGTCAAGCAGCAGTTTGAATGATAGTTTCTGGCAGGTGAATTATTCTGAAACACCTGAGTTAGAGTCAACAGCAACATCCAATGCCAAAAGACCTAAAATAGAGGTAATTTTCTGCTGCCTACTTACAGGATAAAAGTACAAAACTGCACGTCCAAACATGAGAGCTCCGTGGTAGACTATATTGGTTCTTAAAAGAAAAAGGAGGTCCATTCAGGTGCATTTTAGAGTTAAAAAAGTAAAAACTGATCTTTGTCCATGACTGCTAGAGAGAGAGTAGAATGACCAAATGCAATATGGTGGAATATTTCTTGAAGCTTCAGCTTGCATGCAAACTGAAACTCGACTCAGAGTGGTTTTTAACAATCATTCCTTGTGCCTGCTCTTTCATTTTTATTGATTATGTTTCTGCAACTGGAACATCATCAACCCCAAACTACCACTTATAGTTCTGTTCTGAAAACTTTGATGGCTATGATAGAATATTGTATGGAAAAATCAAACATTACTTTATGTGAACGAGACATGAGTTTTACTTCTTTAGTACTCTTTCAGCTTGTGAGTATGTCTAAATAATCTGAACTAAGTATAAGACGACTGTCTAGAATAAAGACAAATGCATTTTATTGAATGCTATATGCAACCTGAGACTTTCAATTGGCTGCTCAGTCTTTGTACCAGACTGTCATTCAGTGTCTACTTATTCAACATATGATAATGCCCAATCCCTACCACAAACTTCCCGGCTCTTAAGTGTCCCTCAGCCTTACTGTGCCTGAGCAGCACTCAGTACAAATCTATACGGAAACAATAAAAATACGCCTTCTTTCTATATGGTTTCAATATTATCCCTTTTGTAGCAACTAGCGTGTGAATATATTCTAGTGGTGAACTAAAACCCTATCTATGAACTATTTTGACTTGAATTCCCAACTGCTCCTCAATTTATTGCTAGGCTCTTTAGCATTTAGATTGACCCAAAACACTTGGTCCTTGCATTTTCATATTGGGTTTTTTTTATGCCTGGATTCACCCTACCTTTTTTGTGTTACTATAAACAATGTGAATCACTTGAATCCCACCTAATCATTTGATAGAGTTTCGCATTTCCAGACGAGTAAATTTGTTCAACAGGAAAAGCAGAAATGCTAAGTGAAAACATTCCAAGCTTTGGCAGGATACAGGGCAATAGGCATTATAATTTTATAAGACTCGAGAATATAAAGCAGCTTTGCTTCTAGGCAGCATGTGAACCAACATTCTGGAATGGTGTTTTTATTCCGTAAAGCTTTGCATTTATGGGAAAATGAGTTATTTTTGTTATTTTGTTTGTCACATGGTTGCGTTTCATCCTCTCTTTTTTAAATGATCAGACATCCAATGTTTGTTGATGTAAGATAAGAGTGTTTGATCACAAAAATGTTATCTTGTCCAGATGCTGATTTCCTTGATCTTGCATTCAAATTGATGTTTTGATCTTTGACAAGGAAATTGCTTTACTTGTCAACTTTTGGTTTCTCCAGCTTTACCTTGTGGATAACAGTAATTAGTACTTTATTGTAGGTTAATATAGCACTGGTTGAAGAGATACAGAAAATCAATCGGCAACTTATCGACACTGTTGTAGAAATTAGTGACGAAGGTGTTGATCCAAGTGCTCTTGCTGCTGCAACGGAGGGTGGTGAAGGCACTACTGTTAAGTGTTCTTTCACTGCCGTTGCATTGAGTCCAAACTTAAAAGCACTATATGCTTCAGCGCAGATGGTAAGATATTGATCTTCATATACTGAACTTGTGTCATCAACTACTTATCAAAAAAAAGAAAATCTGTCATTAACTCTTTTACATTTTTTGTTTCATTGGTTGAATGATGGTATTTTACTTCTGTGCAGTCTCCAATTCAGCCTTTGAGATTGCTCGTTCCAGTTAATTATCCAAACTGCTGTCCGATTTTGTTGGACAAGT</genome_strand>
        <mrna_strand>AGATTTGGTTGCCATGACCCAATGTCGTCTCCAAGCGAGAAACTACTTTACGCAGGATGGACCTACAGGAACAAAGAAAATGAAGCGATATACAACTTCCAACGTTGTGTCGTCAAGCAGCAGTTTGAATGATAGTTTCTGGCAGGTGAATTATTCTGAAACACCTGAGTTAGAGTCAACAGCAACATCCAATGCCAAAAGACCTAAAATAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATATAGCACTGGTTGAAGAGATACAGAAAATCAATCGGCAACTTATCGACACTGTTGTAGAAATTAGTGACGAAGGTGTTGATCCAAGTGCTCTTGCTGCTGCAACGGAGGGTGGTGAAGGCACTACTGTTAAGTGTTCTTTCACTGCCGTTGCATTGAGTCCAAACTTAAAAGCACTGTATGCTTCAGCGCAGATG................................................................................................................................TCTCCAATTCAGCCTTTGAGATTGCTCGTTCCAGTTAATTATCCAAACTGCTGTCCGATTTTGTTGGACAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420860" ref_strand="+" ref_description="SGN-E420860 [STM-31-J20]">
      <seq>cctacaggaacaaagaaaatgaagcgatatacaacttccaacgttgtgtcgtcaagcagcagtttaaatgatagtttctggcagctgaattattctgaaacacctgagttagagtcaacagcaacatctaatgccaaaagacctaaaatagaggttaatattgcactggttgaagagatacagaaaatcaatcagcaacttattgatactgttgtagaaattagtgacgaaggtgttgatccaagtgctcttgctgctgcaacagagggcggtgaaggcactactgttaagtgttctttcactgccgttgcgttgagtccaaacttaaaagcactgtatgcttcagcgcagatgtctccaattcagcctttgagattgctcgttccagttaattatccaaactgctctctgattttgttggacaagtttccagttgaagtcagtaaagagtatgaagatctatccacgaaggccaagtcaaggtttagtgtctccctgcgaagtctttcacagccaatgtctttaaaagacatagccaagacttgggatgtttgtgctcgtgctgtaatttgtgaatatgcacagcaaagtggaggaggaaccttcagctcaaagtacgggtcttgggagaaattgtcgactgcagcatgatcaaagacggaatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="155829" stop="159014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156129" g_stop="156281" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156282" i_stop="157738" i_length="1457">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="157739" g_stop="157939" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="354" r_length="201" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="157940" i_stop="158067" i_length="128">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="158068" g_stop="158156" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="443" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="158157" i_stop="158488" i_length="332">
            <donor d_prob="0.812" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="158489" g_stop="158714" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="669" r_length="226" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E420860" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156129" e_stop="156281"/>
          <exon e_start="157739" e_stop="157939"/>
          <exon e_start="158068" e_stop="158156"/>
          <exon e_start="158489" e_stop="158714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACAGGAACAAAGAAAATGAAGCGATATACAACTTCCAACGTTGTGTCGTCAAGCAGCAGTTTGAATGATAGTTTCTGGCAGGTGAATTATTCTGAAACACCTGAGTTAGAGTCAACAGCAACATCCAATGCCAAAAGACCTAAAATAGAGGTAATTTTCTGCTGCCTACTTACAGGATAAAAGTACAAAACTGCACGTCCAAACATGAGAGCTCCGTGGTAGACTATATTGGTTCTTAAAAGAAAAAGGAGGTCCATTCAGGTGCATTTTAGAGTTAAAAAAGTAAAAACTGATCTTTGTCCATGACTGCTAGAGAGAGAGTAGAATGACCAAATGCAATATGGTGGAATATTTCTTGAAGCTTCAGCTTGCATGCAAACTGAAACTCGACTCAGAGTGGTTTTTAACAATCATTCCTTGTGCCTGCTCTTTCATTTTTATTGATTATGTTTCTGCAACTGGAACATCATCAACCCCAAACTACCACTTATAGTTCTGTTCTGAAAACTTTGATGGCTATGATAGAATATTGTATGGAAAAATCAAACATTACTTTATGTGAACGAGACATGAGTTTTACTTCTTTAGTACTCTTTCAGCTTGTGAGTATGTCTAAATAATCTGAACTAAGTATAAGACGACTGTCTAGAATAAAGACAAATGCATTTTATTGAATGCTATATGCAACCTGAGACTTTCAATTGGCTGCTCAGTCTTTGTACCAGACTGTCATTCAGTGTCTACTTATTCAACATATGATAATGCCCAATCCCTACCACAAACTTCCCGGCTCTTAAGTGTCCCTCAGCCTTACTGTGCCTGAGCAGCACTCAGTACAAATCTATACGGAAACAATAAAAATACGCCTTCTTTCTATATGGTTTCAATATTATCCCTTTTGTAGCAACTAGCGTGTGAATATATTCTAGTGGTGAACTAAAACCCTATCTATGAACTATTTTGACTTGAATTCCCAACTGCTCCTCAATTTATTGCTAGGCTCTTTAGCATTTAGATTGACCCAAAACACTTGGTCCTTGCATTTTCATATTGGGTTTTTTTTATGCCTGGATTCACCCTACCTTTTTTGTGTTACTATAAACAATGTGAATCACTTGAATCCCACCTAATCATTTGATAGAGTTTCGCATTTCCAGACGAGTAAATTTGTTCAACAGGAAAAGCAGAAATGCTAAGTGAAAACATTCCAAGCTTTGGCAGGATACAGGGCAATAGGCATTATAATTTTATAAGACTCGAGAATATAAAGCAGCTTTGCTTCTAGGCAGCATGTGAACCAACATTCTGGAATGGTGTTTTTATTCCGTAAAGCTTTGCATTTATGGGAAAATGAGTTATTTTTGTTATTTTGTTTGTCACATGGTTGCGTTTCATCCTCTCTTTTTTAAATGATCAGACATCCAATGTTTGTTGATGTAAGATAAGAGTGTTTGATCACAAAAATGTTATCTTGTCCAGATGCTGATTTCCTTGATCTTGCATTCAAATTGATGTTTTGATCTTTGACAAGGAAATTGCTTTACTTGTCAACTTTTGGTTTCTCCAGCTTTACCTTGTGGATAACAGTAATTAGTACTTTATTGTAGGTTAATATAGCACTGGTTGAAGAGATACAGAAAATCAATCGGCAACTTATCGACACTGTTGTAGAAATTAGTGACGAAGGTGTTGATCCAAGTGCTCTTGCTGCTGCAACGGAGGGTGGTGAAGGCACTACTGTTAAGTGTTCTTTCACTGCCGTTGCATTGAGTCCAAACTTAAAAGCACTATATGCTTCAGCGCAGATGGTAAGATATTGATCTTCATATACTGAACTTGTGTCATCAACTACTTATCAAAAAAAAGAAAATCTGTCATTAACTCTTTTACATTTTTTGTTTCATTGGTTGAATGATGGTATTTTACTTCTGTGCAGTCTCCAATTCAGCCTTTGAGATTGCTCGTTCCAGTTAATTATCCAAACTGCTGTCCGATTTTGTTGGACAAGTTTCCAGTTGAAGTTAGGTGAGTAAATTTGGCAATCTTCTTGATAAGAGCAATTATAGTCCTCGTTATAAATTAAAAAAAGTAAGAGCAGCTATAACATATGAATCAAAATAGCATTAATAGATCTGATTTTTTGCCGTATTCATTATACCTTGTTGATTTGTGAAAAAAGGTCTTACAATTTGAATTCTCTAATAGTCAATCATAAAAGATTTTGTACAAGTGCCTTTTGATCTGCGTTAAGATTATCAACTAGGTTTCGAAAATCTCCTTATACAATCTTATAGTCTCCACTTTTAACTACTATGTGATGCATTTGAAAGCTGTGTTTCAACTATTTTCTTCTGCAGTAAAGAGTATGAAGATCTATCCACAAAGGCCAAGTCAAGGTTTAGTGTCTCCCTGCGAAGTCTTTCACAGCCAATGTCTCTAAAAGACATAGTCAAGACTTGGGATGTTTGTGCTCGTGCTGTAATTTGTGAATATGCACAACAAAGTGGAGGAGGAACCTTCAGCTCAAAGTATGGGTCTTGGGAGAATTGTTCAACTGCAGCATGATCAAAGACGGAATTATGA</genome_strand>
        <mrna_strand>CCTACAGGAACAAAGAAAATGAAGCGATATACAACTTCCAACGTTGTGTCGTCAAGCAGCAGTTTAAATGATAGTTTCTGGCAGCTGAATTATTCTGAAACACCTGAGTTAGAGTCAACAGCAACATCTAATGCCAAAAGACCTAAAATAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATATTGCACTGGTTGAAGAGATACAGAAAATCAATCAGCAACTTATTGATACTGTTGTAGAAATTAGTGACGAAGGTGTTGATCCAAGTGCTCTTGCTGCTGCAACAGAGGGCGGTGAAGGCACTACTGTTAAGTGTTCTTTCACTGCCGTTGCGTTGAGTCCAAACTTAAAAGCACTGTATGCTTCAGCGCAGATG................................................................................................................................TCTCCAATTCAGCCTTTGAGATTGCTCGTTCCAGTTAATTATCCAAACTGCTCTCTGATTTTGTTGGACAAGTTTCCAGTTGAAGTCAG............................................................................................................................................................................................................................................................................................................................................TAAAGAGTATGAAGATCTATCCACGAAGGCCAAGTCAAGGTTTAGTGTCTCCCTGCGAAGTCTTTCACAGCCAATGTCTTTAAAAGACATAGCCAAGACTTGGGATGTTTGTGCTCGTGCTGTAATTTGTGAATATGCACAGCAAAGTGGAGGAGGAACCTTCAGCTCAAAGTACGGGTCTTGGGAGAAATTGTCGACTGCAGCATGATCAAAGACGGAATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446766" ref_strand="+" ref_description="SGN-E446766 [cSTA-22-L14]">
      <seq>cgagggagagagagcgagataccaacttccaaccgttgtgttgtcaagcagcagtttaaatgatagtttctggcatctgaattattctgaaacacctgagttagaagtcaacagcaaccatctaatgcccaaagacctaaaatagaggttaatattgcactggttgaagagatacagaaaatcaatcggcaacttatcgacactgttgtagaaattagtgacgaaggtgttgatccaagtgctcttgctgctgcaacagaaggcggtgaaggcactactgttaagtgttctttcactgccgttgcgttgagtccaaacttaaaagcactgtatgcttcagcgcagatgtctccaattcagcctttgagattgctcgttccagttaattatccaaactgctctccgattttgttggacaagtttccagttgaagtcagtaaagagtatgaagatctatccacgaaggccaagtcaaggtttagtgtctccctgcgaagtctttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="155839" stop="158856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156139" g_stop="156281" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.846"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156282" i_stop="157738" i_length="1457">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="157739" g_stop="157939" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="348" r_length="201" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="157940" i_stop="158067" i_length="128">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="158068" g_stop="158156" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="437" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="158157" i_stop="158488" i_length="332">
            <donor d_prob="0.812" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="158489" g_stop="158556" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="505" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E446766" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156139" e_stop="156281"/>
          <exon e_start="157739" e_stop="157939"/>
          <exon e_start="158068" e_stop="158156"/>
          <exon e_start="158489" e_stop="158556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAAAATGAAGCGATATA-CAACTTCCAAC-GTTGTGTCGTCAAGCAGCAGTTTGAATGATAGTTTCTGGCAGGTGAATTATTCTGAAACACCTGAGTTAG-AGTCAACAGCAA-CATCCAATGCCAAAAGACCTAAAATAGAGGTAATTTTCTGCTGCCTACTTACAGGATAAAAGTACAAAACTGCACGTCCAAACATGAGAGCTCCGTGGTAGACTATATTGGTTCTTAAAAGAAAAAGGAGGTCCATTCAGGTGCATTTTAGAGTTAAAAAAGTAAAAACTGATCTTTGTCCATGACTGCTAGAGAGAGAGTAGAATGACCAAATGCAATATGGTGGAATATTTCTTGAAGCTTCAGCTTGCATGCAAACTGAAACTCGACTCAGAGTGGTTTTTAACAATCATTCCTTGTGCCTGCTCTTTCATTTTTATTGATTATGTTTCTGCAACTGGAACATCATCAACCCCAAACTACCACTTATAGTTCTGTTCTGAAAACTTTGATGGCTATGATAGAATATTGTATGGAAAAATCAAACATTACTTTATGTGAACGAGACATGAGTTTTACTTCTTTAGTACTCTTTCAGCTTGTGAGTATGTCTAAATAATCTGAACTAAGTATAAGACGACTGTCTAGAATAAAGACAAATGCATTTTATTGAATGCTATATGCAACCTGAGACTTTCAATTGGCTGCTCAGTCTTTGTACCAGACTGTCATTCAGTGTCTACTTATTCAACATATGATAATGCCCAATCCCTACCACAAACTTCCCGGCTCTTAAGTGTCCCTCAGCCTTACTGTGCCTGAGCAGCACTCAGTACAAATCTATACGGAAACAATAAAAATACGCCTTCTTTCTATATGGTTTCAATATTATCCCTTTTGTAGCAACTAGCGTGTGAATATATTCTAGTGGTGAACTAAAACCCTATCTATGAACTATTTTGACTTGAATTCCCAACTGCTCCTCAATTTATTGCTAGGCTCTTTAGCATTTAGATTGACCCAAAACACTTGGTCCTTGCATTTTCATATTGGGTTTTTTTTATGCCTGGATTCACCCTACCTTTTTTGTGTTACTATAAACAATGTGAATCACTTGAATCCCACCTAATCATTTGATAGAGTTTCGCATTTCCAGACGAGTAAATTTGTTCAACAGGAAAAGCAGAAATGCTAAGTGAAAACATTCCAAGCTTTGGCAGGATACAGGGCAATAGGCATTATAATTTTATAAGACTCGAGAATATAAAGCAGCTTTGCTTCTAGGCAGCATGTGAACCAACATTCTGGAATGGTGTTTTTATTCCGTAAAGCTTTGCATTTATGGGAAAATGAGTTATTTTTGTTATTTTGTTTGTCACATGGTTGCGTTTCATCCTCTCTTTTTTAAATGATCAGACATCCAATGTTTGTTGATGTAAGATAAGAGTGTTTGATCACAAAAATGTTATCTTGTCCAGATGCTGATTTCCTTGATCTTGCATTCAAATTGATGTTTTGATCTTTGACAAGGAAATTGCTTTACTTGTCAACTTTTGGTTTCTCCAGCTTTACCTTGTGGATAACAGTAATTAGTACTTTATTGTAGGTTAATATAGCACTGGTTGAAGAGATACAGAAAATCAATCGGCAACTTATCGACACTGTTGTAGAAATTAGTGACGAAGGTGTTGATCCAAGTGCTCTTGCTGCTGCAACGGAGGGTGGTGAAGGCACTACTGTTAAGTGTTCTTTCACTGCCGTTGCATTGAGTCCAAACTTAAAAGCACTATATGCTTCAGCGCAGATGGTAAGATATTGATCTTCATATACTGAACTTGTGTCATCAACTACTTATCAAAAAAAAGAAAATCTGTCATTAACTCTTTTACATTTTTTGTTTCATTGGTTGAATGATGGTATTTTACTTCTGTGCAGTCTCCAATTCAGCCTTTGAGATTGCTCGTTCCAGTTAATTATCCAAACTGCTGTCCGATTTTGTTGGACAAGTTTCCAGTTGAAGTTAGGTGAGTAAATTTGGCAATCTTCTTGATAAGAGCAATTATAGTCCTCGTTATAAATTAAAAAAAGTAAGAGCAGCTATAACATATGAATCAAAATAGCATTAATAGATCTGATTTTTTGCCGTATTCATTATACCTTGTTGATTTGTGAAAAAAGGTCTTACAATTTGAATTCTCTAATAGTCAATCATAAAAGATTTTGTACAAGTGCCTTTTGATCTGCGTTAAGATTATCAACTAGGTTTCGAAAATCTCCTTATACAATCTTATAGTCTCCACTTTTAACTACTATGTGATGCATTTGAAAGCTGTGTTTCAACTATTTTCTTCTGCAGTAAAGAGTATGAAGATCTATCCACAAAGGCCAAGTCAAGGTTTAGTGTCTCCCTGCGAAGTCTTTCAC</genome_strand>
        <mrna_strand>CGAGGGAGAGAGAGCGAGATACCAACTTCCAACCGTTGTGTTGTCAAGCAGCAGTTTAAATGATAGTTTCTGGCATCTGAATTATTCTGAAACACCTGAGTTAGAAGTCAACAGCAACCATCTAATGCCCAAAGACCTAAAATAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATATTGCACTGGTTGAAGAGATACAGAAAATCAATCGGCAACTTATCGACACTGTTGTAGAAATTAGTGACGAAGGTGTTGATCCAAGTGCTCTTGCTGCTGCAACAGAAGGCGGTGAAGGCACTACTGTTAAGTGTTCTTTCACTGCCGTTGCGTTGAGTCCAAACTTAAAAGCACTGTATGCTTCAGCGCAGATG................................................................................................................................TCTCCAATTCAGCCTTTGAGATTGCTCGTTCCAGTTAATTATCCAAACTGCTCTCCGATTTTGTTGGACAAGTTTCCAGTTGAAGTCAG............................................................................................................................................................................................................................................................................................................................................TAAAGAGTATGAAGATCTATCCACGAAGGCCAAGTCAAGGTTTAGTGTCTCCCTGCGAAGTCTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417751" ref_strand="+" ref_description="SGN-E417751 [STM-26-C19]">
      <seq>ggtggttgatccaagtgctcttgctgctgcaacagagggcggtgaaggcactactgttaagtgttctttcactgccgttgcgttgagtccaaacttaaaagcactgtatgcttcagcgcagatgtctccaattcagcctttgagattgctcgttccagttaattatccaaactgctctccgattttgttggacaagtttccagttgaagtcagtaaagagtatgaagatctatccacgaaggccaagtcaaggtttagtgtctccctgcgaagtctttcacagccaatgtctttaaaagacatagccaagacttgggatgtttgtgctcgtgctgtaatttgtgaatatgcacagcaaagtggaggaggaaccttcagctcaagtacgggtcttgggagaactgttcgattgcagcatgatcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="157517" stop="159002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157817" g_stop="157939" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="157940" i_stop="158067" i_length="128">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="158068" g_stop="158156" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="213" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="158157" i_stop="158488" i_length="332">
            <donor d_prob="0.812" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="158489" g_stop="158702" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="426" r_length="213" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E417751" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157817" e_stop="157939"/>
          <exon e_start="158068" e_stop="158156"/>
          <exon e_start="158489" e_stop="158702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGT-GTTGATCCAAGTGCTCTTGCTGCTGCAACGGAGGGTGGTGAAGGCACTACTGTTAAGTGTTCTTTCACTGCCGTTGCATTGAGTCCAAACTTAAAAGCACTATATGCTTCAGCGCAGATGGTAAGATATTGATCTTCATATACTGAACTTGTGTCATCAACTACTTATCAAAAAAAAGAAAATCTGTCATTAACTCTTTTACATTTTTTGTTTCATTGGTTGAATGATGGTATTTTACTTCTGTGCAGTCTCCAATTCAGCCTTTGAGATTGCTCGTTCCAGTTAATTATCCAAACTGCTGTCCGATTTTGTTGGACAAGTTTCCAGTTGAAGTTAGGTGAGTAAATTTGGCAATCTTCTTGATAAGAGCAATTATAGTCCTCGTTATAAATTAAAAAAAGTAAGAGCAGCTATAACATATGAATCAAAATAGCATTAATAGATCTGATTTTTTGCCGTATTCATTATACCTTGTTGATTTGTGAAAAAAGGTCTTACAATTTGAATTCTCTAATAGTCAATCATAAAAGATTTTGTACAAGTGCCTTTTGATCTGCGTTAAGATTATCAACTAGGTTTCGAAAATCTCCTTATACAATCTTATAGTCTCCACTTTTAACTACTATGTGATGCATTTGAAAGCTGTGTTTCAACTATTTTCTTCTGCAGTAAAGAGTATGAAGATCTATCCACAAAGGCCAAGTCAAGGTTTAGTGTCTCCCTGCGAAGTCTTTCACAGCCAATGTCTCTAAAAGACATAGTCAAGACTTGGGATGTTTGTGCTCGTGCTGTAATTTGTGAATATGCACAACAAAGTGGAGGAGGAACCTTCAGCTCAAAGTATGGGTCTTGGGAGAATTGTTCAACTGCAGCATGATCAAAG</genome_strand>
        <mrna_strand>GGTGGTTGATCCAAGTGCTCTTGCTGCTGCAACAGAGGGCGGTGAAGGCACTACTGTTAAGTGTTCTTTCACTGCCGTTGCGTTGAGTCCAAACTTAAAAGCACTGTATGCTTCAGCGCAGATG................................................................................................................................TCTCCAATTCAGCCTTTGAGATTGCTCGTTCCAGTTAATTATCCAAACTGCTCTCCGATTTTGTTGGACAAGTTTCCAGTTGAAGTCAG............................................................................................................................................................................................................................................................................................................................................TAAAGAGTATGAAGATCTATCCACGAAGGCCAAGTCAAGGTTTAGTGTCTCCCTGCGAAGTCTTTCACAGCCAATGTCTTTAAAAGACATAGCCAAGACTTGGGATGTTTGTGCTCGTGCTGTAATTTGTGAATATGCACAGCAAAGTGGAGGAGGAACCTTCAGCTC-AAGTACGGGTCTTGGGAGAACTGTTCGATTGCAGCATGATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420861" ref_strand="-" ref_description="SGN-E420861 [STM-31-J20]">
      <seq>tgccgttgcgttgagtccaaacttaaaagcactgtatgcttcagcgcagatgtttccaattcagcctttgagattgctcgttccagttaattatccaaactgctttttgattttgttggacaagtttccagttgaagtcagtaaagagtatgaagatttatccccgaaggccaagtcaaggtttagtgtttccctgcgaagtttttcacagccaatgtttttaaaagacatagccaagacttgggatgtttgtgctcgtgctgtaatttgtgaatatgcacagcaaagtggaggaggaaccttcagctcaaagtacgggttttgggagaattgtttgactgcagcatgatcaaagacggaatgatgaggtttttttcatccgcctttggccttgctttcctggtggtacctcctatttactgatggtgattgggtaattgttgtttttttgaattgaatgctgagattcattttcatatgctggttgttgctggataagtttttgtacccccttgagctgtttgtactcaagtgtgtggattttggttgggataattgattttgggataacttattttccaaccaaatgtgcccttggtgaaattttaaggttttaaaccattgtttttttttatggcttgttcattgtggtggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="157588" stop="159367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157888" g_stop="157939" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="157940" i_stop="158067" i_length="128">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="158068" g_stop="158156" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="141" r_length="89" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="158157" i_stop="158488" i_length="332">
            <donor d_prob="0.812" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="158489" g_stop="158896" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="549" r_length="408" r_score="0.917"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="158897" i_stop="158963" i_length="67">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.302" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="158964" g_stop="159060" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="647" r_length="98" r_score="0.887"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="159061" i_stop="159129" i_length="69">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.881" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="159130" g_stop="159138" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="656" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="657" polyA_stop="686"/>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E420861" ref_strand="-">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420861" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="157888" e_stop="157939"/>
          <exon e_start="158068" e_stop="158156"/>
          <exon e_start="158489" e_stop="158896"/>
          <exon e_start="158964" e_stop="159060"/>
          <exon e_start="159130" e_stop="159138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGTTGCATTGAGTCCAAACTTAAAAGCACTATATGCTTCAGCGCAGATGGTAAGATATTGATCTTCATATACTGAACTTGTGTCATCAACTACTTATCAAAAAAAAGAAAATCTGTCATTAACTCTTTTACATTTTTTGTTTCATTGGTTGAATGATGGTATTTTACTTCTGTGCAGTCTCCAATTCAGCCTTTGAGATTGCTCGTTCCAGTTAATTATCCAAACTGCTGTCCGATTTTGTTGGACAAGTTTCCAGTTGAAGTTAGGTGAGTAAATTTGGCAATCTTCTTGATAAGAGCAATTATAGTCCTCGTTATAAATTAAAAAAAGTAAGAGCAGCTATAACATATGAATCAAAATAGCATTAATAGATCTGATTTTTTGCCGTATTCATTATACCTTGTTGATTTGTGAAAAAAGGTCTTACAATTTGAATTCTCTAATAGTCAATCATAAAAGATTTTGTACAAGTGCCTTTTGATCTGCGTTAAGATTATCAACTAGGTTTCGAAAATCTCCTTATACAATCTTATAGTCTCCACTTTTAACTACTATGTGATGCATTTGAAAGCTGTGTTTCAACTATTTTCTTCTGCAGTAAAGAGTATGAAGATCTATCCACAAAGGCCAAGTCAAGGTTTAGTGTCTCCCTGCGAAGTCTTTCACAGCCAATGTCTCTAAAAGACATAGTCAAGACTTGGGATGTTTGTGCTCGTGCTGTAATTTGTGAATATGCACAACAAAGTGGAGGAGGAACCTTCAGCTCAAAGTATGGGTCTTGGGAGAATTGTTCAACTGCAGCATGATCAAAGACGGAATTATGAGGTTTTCTTCAGCTGCCTTTGGCCTTGCTCTCCTGCTGTTACCTCCTATTTACTGATGGTGATTGCGTAATTGTCGTCTTCTTGAATTGAATGCTGAGATTCATTTTTATATACTGGCTGTTGCTGGATAAGCTTTTGTACCCCCTTGCGTTGTTTGTACTCAAGTGTGTGGATTTTACCTCTTGAGTTGTTTATACTCAAGGTGTTTGCAGCTGAATATTTTTTAACTTAGCACTTGTTTGGTACAAGGGATAACTGATTTCGGGATAACTTATTCCCCAACCAAACATGCCCTTGGTGAAATTTCAAGGTTTT-AAGCATTGTTATTTTTTATGGCTTGTTCATTGTAGTGGTCTGCTTTGATTCATTTTGGAACCATATGAGGTTTATAAATGGGGCTCTTACATGATTACAGGAGGAGGAA</genome_strand>
        <mrna_strand>TGCCGTTGCGTTGAGTCCAAACTTAAAAGCACTGTATGCTTCAGCGCAGATG................................................................................................................................TTTCCAATTCAGCCTTTGAGATTGCTCGTTCCAGTTAATTATCCAAACTGCTTTTTGATTTTGTTGGACAAGTTTCCAGTTGAAGTCAG............................................................................................................................................................................................................................................................................................................................................TAAAGAGTATGAAGATTTATCCCCGAAGGCCAAGTCAAGGTTTAGTGTTTCCCTGCGAAGTTTTTCACAGCCAATGTTTTTAAAAGACATAGCCAAGACTTGGGATGTTTGTGCTCGTGCTGTAATTTGTGAATATGCACAGCAAAGTGGAGGAGGAACCTTCAGCTCAAAGTACGGGTTTTGGGAGAATTGTTTGACTGCAGCATGATCAAAGACGGAATGATGAGGTTTTTTTCATCCGCCTTTGGCCTTGCTTTCCTGGTGGTACCTCCTATTTACTGATGGTGATTGGGTAATTGTTGTTTTTTTGAATTGAATGCTGAGATTCATTTTCATATGCTGGTTGTTGCTGGATAAGTTTTTGTACCCCCTTGAGCTGTTTGTACTCAAGTGTGTGGATTTTGGTTG...................................................................GGATAATTGATTTTGGGATAACTTATTTTCCAACCAAATGTGCCCTTGGTGAAATTTTAAGGTTTTAAACCATTGTTTTTTTTTATGGCTTGTTCATT.....................................................................GTGGTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739385" ref_strand="+" ref_description="SGN-E739385 [LC17BA01]">
      <seq>cgctttgatgttcgcctctctctctctctcctctttctctctctctctgcctttctcttcatcagaaaaaagttcactggcactcatgagcaacgaagaagagaaaagatgtcctctgtgtgctgaagagatggactggacagatcagcagtttaagccttgcaaatgtggttatcaggtgtgtctttggtgttggcatcacataatggacatggcagaaaaagatgagtcagagggacgatgtcctgcatgtcgaacaacatacgaaaaggagaaagttgttagaatgcaaacaaatattgagagggcagggaacaacaatgccaataggaaaagcaaacaacaaccaaaggcaaagccaaaaactaatgaagccaagaaggatctcacgaatgttcgggtcattcaacgtaaaatggcatatgtgattggcctgcctctaagtcttgcagatgaagatcttttacagcggaaggaatattttgggcagtatggaaaagttaccaaaatttctctctctaggacaactggtggtgccatccagcaatttgttaatgatacttgtagtgtatatattacatattcaaaagaagaggaggccgtgcggtgtattcagtttgtacatggttttgtcttggaagatagatatttgagagcatcatttgggactgcaaaatactgcccatgcgtggttgagaaacacgccttgcagtaatccgtcttgtctatatttgcatagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="161389" stop="166034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161686" g_stop="161763" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="161764" i_stop="162203" i_length="440">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="162204" g_stop="162303" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="178" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="162304" i_stop="163627" i_length="1324">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="163628" g_stop="163755" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="306" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="163756" i_stop="163830" i_length="75">
            <donor d_prob="0.763" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="163831" g_stop="163984" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="460" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="163985" i_stop="164131" i_length="147">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="164132" g_stop="164241" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="570" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="164242" i_stop="165361" i_length="1120">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="165362" g_stop="165445" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="654" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="165446" i_stop="165527" i_length="82">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="165528" g_stop="165576" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="704" r_length="50" r_score="0.959"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="165577" i_stop="165696" i_length="120">
            <donor d_prob="0.462" d_score="0.96"/>
            <acceptor a_prob="0.883" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="165697" g_stop="165734" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="742" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E739385" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161686" e_stop="161763"/>
          <exon e_start="162204" e_stop="162303"/>
          <exon e_start="163628" e_stop="163755"/>
          <exon e_start="163831" e_stop="163984"/>
          <exon e_start="164132" e_stop="164241"/>
          <exon e_start="165362" e_stop="165445"/>
          <exon e_start="165528" e_stop="165576"/>
          <exon e_start="165697" e_stop="165734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGGTTTTTCGCCTCTCTCTCTCTCTCCTCTTTCTCTCTCTTTCTGCCTTTCTCTTCATCAGAAAAAAGTTCACTGTAAGTTTTTTTTTTTCAGTTTTCTGCAAATCTGAGCTTTTCAAAACCCTAACTATTGAAGAATTCGGAAATGTATGTGTGGATTTTTGTTTTTGTTTTGTTAATTTTTTGTGTTGTGTGGAAATGCGGATGATTATATGAATGTACATGTATGATTTATTTATTATTGTTTTTGGTGTGTGAATCGTATAGCTAGATTTGTTAATTGAATGCGTTGAATCTATGTTTTTGTTTTTTTTTTTGAATTTTCTGATCTGTTGTGGAAATGTTGGTGTGTTACCTGTAGATTAGGGTTTTGAAGTTTTTTTTTTATTTGTTGTTTTAATAAATGTGTACTAGGTTGGAGGAAATGTAGGTGAAGAGTATTAATGTGTGAAGATGTTTGTTGTAGTAGAATTAATTGAATGTGATTTTAAAATAGTTTTTGGAATTGATTGCAGGGCAATCATGAGCAACGAAGAAGAGAAAAGATGTCCTCTGTGTGCTGAAGAGATGGACTGGACAGATCAGCAGTTTAAGCCTTGCAAATGTGGTTATCAGGTATAGATTCTTTGGGTTTTTTCTTTTGTTTTTGAATTTTTCCTGTTATTTATTTTGGTTGAGATATGGCATGTGTTGGTTCTGGTTGGTAGATAGTGCTACTGGTATTGAATATATGTTATAATCGAACTGGTATGAACTGAATTTCACTTTAAAAAATTATTTTAGCTGAACTAGTTTGCTATTATCTGGCGATTATAGAAGATTTTTACATTTCTGTGCGAAGTTATGTAGACATTTGCTGAGTCTGAGACTGCTTCAGATTTCATGTATTTAGTATGCGTCTGCCGTCTGTATTTGTATTTTTAAATTAGAAATCTTGGTTGGCTCAATCCTAGTTTCCTTTTAATTGCAGTTTTTGGTCTAAAACTTTTTTTACTTTATTGAGCTGATGAGAGAATAAATAACTTTATTACAAGCTTTATTTTGATGTGAACAATTGCTTTAGGTAAGACTAGATCAATGATAAACACATTTTGTGATATCAGGAAATTTCTCCTTTTTTGGTTGTAGAATTAGTATATACACTGACGCGGTTCTTCAGCCTTACATTCAATATTAGCCATGAATACCGTAGTAGTGTTCACATTTTCTTTTCGTGAATATGACTGGATGGTTTAGACTTCAGTGATCATTTGAAATTATTGATGTATCAACAGACTCCATGTTTGTCAGCTTTGAAGTAGCTTCAGCTCCTAAGAGCACTCACTACATAGGAAACAGTTCCTAACAGGATGACAACATGCTCTTTCAAGTTTATTAACGTGGATAATTCTTTCGTTACAATATGCCGTTTGTTATACTCTGAGTGCTATCTTTAATATTTTGAAAATGGGGTAGAGTTCAGCTAGAGAAAGACCAATAATATGCAATTATTGTTTTTCTTCTTGACGTATATGATATTGATTTTTTTCCCCAGAATTCAGTTGGTTTCTAAGATCACTTCTGGTGCTAGCCTTTTTATTAGTTATTCTGGTAGACCCCCAGCCAATGTATTTTTCTTTAAATGGAGTTCCTGATAAAGCTACGTAAAGACTCTTATTGTTATTCCTATTTTATAAATATTATTTTGTTGAACTAAGAAAACATTGATGATTCCAGTTCAAAATTTTCAGCCGTATAAAGTTAGTTGAAAGAATAATTAGATACATCGTAGCTATCACACTTCCAAGTACTTGAGTCATTACTATTAGATTTTGTTAGAAGCTTGGCAAGACAGCACACTTGTTAGTATGATATTTAAGGGAGGAGTGCTAAAATGTAGACTTTCTAATACATCAGTTGTTTTCTTTTTGTGGCTTATATTTTACAATTATTACTACAGGTGTGTCTTTGGTGTTGGCATCACATAATGGACATGGCAGAAAAAGATGAGTCAGAGGGACGATGTCCTGCATGTCGAACAACATACGAAAAGGAGAAAGTTGTTAGAATGCAAACAAATATTGAGAGGTTTTTTCCCTTGTGACTAATTTACTTTTTATGGTGTATGGAGATAGAATATAACTGACAGTTGGCTTCTAACAGGGCAGGGAACAACAATGCCAATAGGAAAAGCAAACAACAACCAAAGGCAAAGCCAAAAACTAATGAAGCCAAGAAGGATCTCACGAATGTTCGGGTCATTCAACGTAAAATGGCATATGTGATTGGCCTGCCTCTAAGTCTTGCAGATGAAGATGTATGGAGTTATTTTCCATGTTACCCGTTGCTAATTTCTTTTTGATGAAGTAATTGGTTTTGTTAATTCTAAATTTTATTGACCCTGGAATTATAGGAAAAAATCTTCTTGTCCATCTCTCTCCTGATAATTTTTATTCTTGAGCAGCTTTTACAGCGGAAGGAATATTTTGGGCAGTATGGAAAAGTTACCAAAATTTCTCTCTCTAGGACAACTGGTGGTGCCATCCAGCAATTTGTTAATGATACTTGTAGTGTGTGAGTAATGCTACATGTCTTGGTTATCATGGCTTGTTTAGGTTTTTATTAATGAGAGATTTGCTCTTACGGGCTCTTTGTTTCCTTTAGATTCAACTAGTCCAAGTTTTGTCTTAAAAGGCGGGGACTTTATATTTTATTTTTCTCTGGTGCTATTACCTTAATATGTTCCCATTACTTCATCCTGATTTTCCCTTGTTTGGATCTTATTACTTTGTTTAGGTCAATATTATTTATCTCATGTTGCAATGGTCTAATGTCTTGGGTTTCTTCCTAAATTTGTCTTGCAGACAATTGTTTTTGTTTTGCTGAAACTGGGTACATATTCAGCACAATCTTATTGCTGCTTCATCAGTTACATGATATGTTTACCTATGAAATTTCTTTTTGCTGAAAGCTGTTACATTATCCTTACTTATCTTAATACCAACATAAGGTGCTAGATTGTAGAATCCTTTCAATTGTAGGTGCTTGTACCCTAAGCTGCCCAATTTTCCAGTTAATCTTTGGGTTAACAATTAAAATCTGGATATGTATTTCCAAACTCTTCTAGTACAGAAGCTCAAATCATTGAACTTCTCATGAAGAAATTTCCAAATTGAGGTTCAAAGGGCAAACCAGTTTGTCACAATTTAGACATGTTTGGGTTGTTGGATATTACGAGAGCTCATAATCATTTACTTGCTATTCCTATTTAAATTATTTCAAACAAAATTCATTTAGGATGTTGCAAGATGATAACTTTGATTGTATCAGTAGTTGAGACTTGAGAGAGGTGAAATTGGTGGCATTTAATTCAAAGGTGGCTTAGCCATGATACATGATCAGTAAGAGGCTAGAAGCCTAGAACTATAGGAGTTATTAAAATACTTCGGTGCTGAAACTGCATGTGGGGGAAAATAGAAGGTTTGATTGAATGTCTCTGTTTGGATTTGTTTTAGTACTATTGAAGTCAGAACTGTTTTGACTCTTGGTGTATTCAGTTATTCTTCACAATTTCATATACTTGTGCATTTCTAGAGTGTGCATAATTTGCTGTTCAATTTTGGTTTGATTGCATTCCCCCCCTCAGGATTGTCATTCTCATATTTGATCATTTTCTGCTTCTTGTTTTTTGCAGATATATTACATATTCAAAAGAAGAGGAGGCCGTGCGGTGTATTCAGTTTGTACATGGTTTTGTCTTGGAAGATAGATATTTGAGGTAAGCATCTACCCCTTTCTTTTGTTTCCTTGGTCAGTGATGTATACTTTGATTTTCCTTACATTAAAAATGGCCTATGCAGAGCATCATTTGGGACTGCAAAATACTG-CCATGCGTGGTTGAGAAACACGGTATGGACTGTGGTCTGTTTGTGATCACTATTCCTCTTGTCACTCCCTTTGTGGGAGCATGTTAAAGTTTGCTGAACAAATGAATAACCAGTGTTGACATGCTCCTTTTCTTTTGCGCAGCCTTGCAGTAATCCGTCTTGTCTATATTTGCATAGCAT</genome_strand>
        <mrna_strand>CGCTTTGATGTTCGCCTCTCTCTCTCTCTCCTCTTTCTCTCTCTCTCTGCCTTTCTCTTCATCAGAAAAAAGTTCACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCATGAGCAACGAAGAAGAGAAAAGATGTCCTCTGTGTGCTGAAGAGATGGACTGGACAGATCAGCAGTTTAAGCCTTGCAAATGTGGTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCTTTGGTGTTGGCATCACATAATGGACATGGCAGAAAAAGATGAGTCAGAGGGACGATGTCCTGCATGTCGAACAACATACGAAAAGGAGAAAGTTGTTAGAATGCAAACAAATATTGAGAG...........................................................................GGCAGGGAACAACAATGCCAATAGGAAAAGCAAACAACAACCAAAGGCAAAGCCAAAAACTAATGAAGCCAAGAAGGATCTCACGAATGTTCGGGTCATTCAACGTAAAATGGCATATGTGATTGGCCTGCCTCTAAGTCTTGCAGATGAAGAT...................................................................................................................................................CTTTTACAGCGGAAGGAATATTTTGGGCAGTATGGAAAAGTTACCAAAATTTCTCTCTCTAGGACAACTGGTGGTGCCATCCAGCAATTTGTTAATGATACTTGTAGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTACATATTCAAAAGAAGAGGAGGCCGTGCGGTGTATTCAGTTTGTACATGGTTTTGTCTTGGAAGATAGATATTTGAG..................................................................................AGCATCATTTGGGACTGCAAAATACTGCCCATGCGTGGTTGAGAAACACG........................................................................................................................CCTTGCAGTAATCCGTCTTGTCTATATTTGCATAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445033" ref_strand="+" ref_description="SGN-E445033 [cSTA-44-D1]">
      <seq>gttgttttttcgcctctctctctcctctttctctctctttctgcctttctctccatcagaaaaaagttcactggcaatcatgagcaacgaagaagagaaaagatgtcctctgtgtgctgaagagatggactggacagatcagcagtttaagccttgcagatgtggttatcaggtgtgtctttggtgttggcatcacataatggacatggcagaaaaagatgagtcagagggacgatgtcctgcatgtcgaacaacatacgaaaaggagaaagttgttagaatgcaaacaaatattgagagggcagggaacaacaatgccaataggaaaagcaaacaacaaccaaaggcaaagccaaaaactaatgaagccaagaaggatctcacgaatgttcgggtcattcaacgtaaaatggcatatgtgattggcctgcctctaaatcttgcagatgaagatcttttacagcggaaggaatattttgggcagtatggaaaagttaccaaaatttctctgtctcggacaactggtggtgccatccagcaatttgttaatgatacctgtagtgtatatattacatattcaaaagaagaggaggccgtgcggtgtattcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="161388" stop="165707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161691" g_stop="161763" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="161764" i_stop="162203" i_length="440">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="162204" g_stop="162303" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="172" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="162304" i_stop="163627" i_length="1324">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="163628" g_stop="163755" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="300" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="163756" i_stop="163830" i_length="75">
            <donor d_prob="0.763" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="163831" g_stop="163984" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="454" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="163985" i_stop="164131" i_length="147">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="164132" g_stop="164241" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="564" r_length="110" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="164242" i_stop="165361" i_length="1120">
            <donor d_prob="0.478" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="165362" g_stop="165407" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="610" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E445033" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161691" e_stop="161763"/>
          <exon e_start="162204" e_stop="162303"/>
          <exon e_start="163628" e_stop="163755"/>
          <exon e_start="163831" e_stop="163984"/>
          <exon e_start="164132" e_stop="164241"/>
          <exon e_start="165362" e_stop="165407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTTCGCCTCTCTCTCTCTCTCCTCTTTCTCTCTCTTTCTGCCTTTCTCTTCATCAGAAAAAAGTTCACTGTAAGTTTTTTTTTTTCAGTTTTCTGCAAATCTGAGCTTTTCAAAACCCTAACTATTGAAGAATTCGGAAATGTATGTGTGGATTTTTGTTTTTGTTTTGTTAATTTTTTGTGTTGTGTGGAAATGCGGATGATTATATGAATGTACATGTATGATTTATTTATTATTGTTTTTGGTGTGTGAATCGTATAGCTAGATTTGTTAATTGAATGCGTTGAATCTATGTTTTTGTTTTTTTTTTTGAATTTTCTGATCTGTTGTGGAAATGTTGGTGTGTTACCTGTAGATTAGGGTTTTGAAGTTTTTTTTTTATTTGTTGTTTTAATAAATGTGTACTAGGTTGGAGGAAATGTAGGTGAAGAGTATTAATGTGTGAAGATGTTTGTTGTAGTAGAATTAATTGAATGTGATTTTAAAATAGTTTTTGGAATTGATTGCAGGGCAATCATGAGCAACGAAGAAGAGAAAAGATGTCCTCTGTGTGCTGAAGAGATGGACTGGACAGATCAGCAGTTTAAGCCTTGCAAATGTGGTTATCAGGTATAGATTCTTTGGGTTTTTTCTTTTGTTTTTGAATTTTTCCTGTTATTTATTTTGGTTGAGATATGGCATGTGTTGGTTCTGGTTGGTAGATAGTGCTACTGGTATTGAATATATGTTATAATCGAACTGGTATGAACTGAATTTCACTTTAAAAAATTATTTTAGCTGAACTAGTTTGCTATTATCTGGCGATTATAGAAGATTTTTACATTTCTGTGCGAAGTTATGTAGACATTTGCTGAGTCTGAGACTGCTTCAGATTTCATGTATTTAGTATGCGTCTGCCGTCTGTATTTGTATTTTTAAATTAGAAATCTTGGTTGGCTCAATCCTAGTTTCCTTTTAATTGCAGTTTTTGGTCTAAAACTTTTTTTACTTTATTGAGCTGATGAGAGAATAAATAACTTTATTACAAGCTTTATTTTGATGTGAACAATTGCTTTAGGTAAGACTAGATCAATGATAAACACATTTTGTGATATCAGGAAATTTCTCCTTTTTTGGTTGTAGAATTAGTATATACACTGACGCGGTTCTTCAGCCTTACATTCAATATTAGCCATGAATACCGTAGTAGTGTTCACATTTTCTTTTCGTGAATATGACTGGATGGTTTAGACTTCAGTGATCATTTGAAATTATTGATGTATCAACAGACTCCATGTTTGTCAGCTTTGAAGTAGCTTCAGCTCCTAAGAGCACTCACTACATAGGAAACAGTTCCTAACAGGATGACAACATGCTCTTTCAAGTTTATTAACGTGGATAATTCTTTCGTTACAATATGCCGTTTGTTATACTCTGAGTGCTATCTTTAATATTTTGAAAATGGGGTAGAGTTCAGCTAGAGAAAGACCAATAATATGCAATTATTGTTTTTCTTCTTGACGTATATGATATTGATTTTTTTCCCCAGAATTCAGTTGGTTTCTAAGATCACTTCTGGTGCTAGCCTTTTTATTAGTTATTCTGGTAGACCCCCAGCCAATGTATTTTTCTTTAAATGGAGTTCCTGATAAAGCTACGTAAAGACTCTTATTGTTATTCCTATTTTATAAATATTATTTTGTTGAACTAAGAAAACATTGATGATTCCAGTTCAAAATTTTCAGCCGTATAAAGTTAGTTGAAAGAATAATTAGATACATCGTAGCTATCACACTTCCAAGTACTTGAGTCATTACTATTAGATTTTGTTAGAAGCTTGGCAAGACAGCACACTTGTTAGTATGATATTTAAGGGAGGAGTGCTAAAATGTAGACTTTCTAATACATCAGTTGTTTTCTTTTTGTGGCTTATATTTTACAATTATTACTACAGGTGTGTCTTTGGTGTTGGCATCACATAATGGACATGGCAGAAAAAGATGAGTCAGAGGGACGATGTCCTGCATGTCGAACAACATACGAAAAGGAGAAAGTTGTTAGAATGCAAACAAATATTGAGAGGTTTTTTCCCTTGTGACTAATTTACTTTTTATGGTGTATGGAGATAGAATATAACTGACAGTTGGCTTCTAACAGGGCAGGGAACAACAATGCCAATAGGAAAAGCAAACAACAACCAAAGGCAAAGCCAAAAACTAATGAAGCCAAGAAGGATCTCACGAATGTTCGGGTCATTCAACGTAAAATGGCATATGTGATTGGCCTGCCTCTAAGTCTTGCAGATGAAGATGTATGGAGTTATTTTCCATGTTACCCGTTGCTAATTTCTTTTTGATGAAGTAATTGGTTTTGTTAATTCTAAATTTTATTGACCCTGGAATTATAGGAAAAAATCTTCTTGTCCATCTCTCTCCTGATAATTTTTATTCTTGAGCAGCTTTTACAGCGGAAGGAATATTTTGGGCAGTATGGAAAAGTTACCAAAATTTCTCTCTCTAGGACAACTGGTGGTGCCATCCAGCAATTTGTTAATGATACTTGTAGTGTGTGAGTAATGCTACATGTCTTGGTTATCATGGCTTGTTTAGGTTTTTATTAATGAGAGATTTGCTCTTACGGGCTCTTTGTTTCCTTTAGATTCAACTAGTCCAAGTTTTGTCTTAAAAGGCGGGGACTTTATATTTTATTTTTCTCTGGTGCTATTACCTTAATATGTTCCCATTACTTCATCCTGATTTTCCCTTGTTTGGATCTTATTACTTTGTTTAGGTCAATATTATTTATCTCATGTTGCAATGGTCTAATGTCTTGGGTTTCTTCCTAAATTTGTCTTGCAGACAATTGTTTTTGTTTTGCTGAAACTGGGTACATATTCAGCACAATCTTATTGCTGCTTCATCAGTTACATGATATGTTTACCTATGAAATTTCTTTTTGCTGAAAGCTGTTACATTATCCTTACTTATCTTAATACCAACATAAGGTGCTAGATTGTAGAATCCTTTCAATTGTAGGTGCTTGTACCCTAAGCTGCCCAATTTTCCAGTTAATCTTTGGGTTAACAATTAAAATCTGGATATGTATTTCCAAACTCTTCTAGTACAGAAGCTCAAATCATTGAACTTCTCATGAAGAAATTTCCAAATTGAGGTTCAAAGGGCAAACCAGTTTGTCACAATTTAGACATGTTTGGGTTGTTGGATATTACGAGAGCTCATAATCATTTACTTGCTATTCCTATTTAAATTATTTCAAACAAAATTCATTTAGGATGTTGCAAGATGATAACTTTGATTGTATCAGTAGTTGAGACTTGAGAGAGGTGAAATTGGTGGCATTTAATTCAAAGGTGGCTTAGCCATGATACATGATCAGTAAGAGGCTAGAAGCCTAGAACTATAGGAGTTATTAAAATACTTCGGTGCTGAAACTGCATGTGGGGGAAAATAGAAGGTTTGATTGAATGTCTCTGTTTGGATTTGTTTTAGTACTATTGAAGTCAGAACTGTTTTGACTCTTGGTGTATTCAGTTATTCTTCACAATTTCATATACTTGTGCATTTCTAGAGTGTGCATAATTTGCTGTTCAATTTTGGTTTGATTGCATTCCCCCCCTCAGGATTGTCATTCTCATATTTGATCATTTTCTGCTTCTTGTTTTTTGCAGATATATTACATATTCAAAAGAAGAGGAGGCCGTGCGGTGTATTCAG</genome_strand>
        <mrna_strand>GTTGTTTTTTCGC-CTCTCTCTCTCCTCTTTCTCTCTCTTTCTGCCTTTCTCTCCATCAGAAAAAAGTTCACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATCATGAGCAACGAAGAAGAGAAAAGATGTCCTCTGTGTGCTGAAGAGATGGACTGGACAGATCAGCAGTTTAAGCCTTGCAGATGTGGTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCTTTGGTGTTGGCATCACATAATGGACATGGCAGAAAAAGATGAGTCAGAGGGACGATGTCCTGCATGTCGAACAACATACGAAAAGGAGAAAGTTGTTAGAATGCAAACAAATATTGAGAG...........................................................................GGCAGGGAACAACAATGCCAATAGGAAAAGCAAACAACAACCAAAGGCAAAGCCAAAAACTAATGAAGCCAAGAAGGATCTCACGAATGTTCGGGTCATTCAACGTAAAATGGCATATGTGATTGGCCTGCCTCTAAATCTTGCAGATGAAGAT...................................................................................................................................................CTTTTACAGCGGAAGGAATATTTTGGGCAGTATGGAAAAGTTACCAAAATTTCTCTGTCTCGGACAACTGGTGGTGCCATCCAGCAATTTGTTAATGATACCTGTAGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTACATATTCAAAAGAAGAGGAGGCCGTGCGGTGTATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547596" ref_strand="+" ref_description="SGN-E547596 [TUS-71-I23]">
      <seq>agagaactagtctcgagtttttttttttttttttttttctgcctttctctccatcagaaaaaagttcactggcaatcatgagcaacgaagaagagaaaagatgtcctctgtgtgctgaagagatggactggacagatcagcagtttaagccttgcaaatgtggttatcaggtgtgtctttggtgttggcatcacataatggacatggcagaaaaagatgagtcagagggacgatgtcctgcatgtcgaacaacatacgaaaaggagaaagttgttagaatgcaaacaaatattgagagggcagggaacaacaatgccaataggaaaagcaaacaacaaccaaaagcaaagcaaaaaactaatgaagccaagaaggatctcacgaatgttcgggtcattcaacgtaaaatggcatatgtgattggcctgcctctaagtcttgcagatgaagatcttttacagcggaaggaatattttgggcagtatggaaaagttaccaaaatttctctctctcggacaactggtggtgccatccagcaatttgttaatgatacttgtagtgtatatattacatattcaaaagaagaggaggccgtgcggtgtattcagtttgtacatggttttgtcttggaagatagatatttgagagcatcatttgggactgcaaaatactgccatgcgtggttgagaaacacgccttgcagtaatccgtcttgtctatatttgcatagcattggtgctgatgaagatagctttggtaaagatgatgtagctgcgattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="50696" stop="166082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161694" g_stop="161763" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.686"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="161764" i_stop="162203" i_length="440">
            <donor d_prob="0.993" d_score="0.84"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="162204" g_stop="162303" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="170" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="162304" i_stop="163627" i_length="1324">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="163628" g_stop="163755" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="298" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="163756" i_stop="163830" i_length="75">
            <donor d_prob="0.763" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="163831" g_stop="163984" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="452" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="163985" i_stop="164131" i_length="147">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="164132" g_stop="164241" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="562" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="164242" i_stop="165361" i_length="1120">
            <donor d_prob="0.478" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="165362" g_stop="165445" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="646" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="165446" i_stop="165527" i_length="82">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="165528" g_stop="165576" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="695" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="165577" i_stop="165696" i_length="120">
            <donor d_prob="0.462" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="165697" g_stop="165782" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="781" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E547596" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161694" e_stop="161763"/>
          <exon e_start="162204" e_stop="162303"/>
          <exon e_start="163628" e_stop="163755"/>
          <exon e_start="163831" e_stop="163984"/>
          <exon e_start="164132" e_stop="164241"/>
          <exon e_start="165362" e_stop="165445"/>
          <exon e_start="165528" e_stop="165576"/>
          <exon e_start="165697" e_stop="165782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGCCTCTCTCTCTCTCTCCTCTTTCTCTCTCTTTCTGCCTTTCTCTTCATCAGAAAAAAGTTCACTGTAAGTTTTTTTTTTTCAGTTTTCTGCAAATCTGAGCTTTTCAAAACCCTAACTATTGAAGAATTCGGAAATGTATGTGTGGATTTTTGTTTTTGTTTTGTTAATTTTTTGTGTTGTGTGGAAATGCGGATGATTATATGAATGTACATGTATGATTTATTTATTATTGTTTTTGGTGTGTGAATCGTATAGCTAGATTTGTTAATTGAATGCGTTGAATCTATGTTTTTGTTTTTTTTTTTGAATTTTCTGATCTGTTGTGGAAATGTTGGTGTGTTACCTGTAGATTAGGGTTTTGAAGTTTTTTTTTTATTTGTTGTTTTAATAAATGTGTACTAGGTTGGAGGAAATGTAGGTGAAGAGTATTAATGTGTGAAGATGTTTGTTGTAGTAGAATTAATTGAATGTGATTTTAAAATAGTTTTTGGAATTGATTGCAGGGCAATCATGAGCAACGAAGAAGAGAAAAGATGTCCTCTGTGTGCTGAAGAGATGGACTGGACAGATCAGCAGTTTAAGCCTTGCAAATGTGGTTATCAGGTATAGATTCTTTGGGTTTTTTCTTTTGTTTTTGAATTTTTCCTGTTATTTATTTTGGTTGAGATATGGCATGTGTTGGTTCTGGTTGGTAGATAGTGCTACTGGTATTGAATATATGTTATAATCGAACTGGTATGAACTGAATTTCACTTTAAAAAATTATTTTAGCTGAACTAGTTTGCTATTATCTGGCGATTATAGAAGATTTTTACATTTCTGTGCGAAGTTATGTAGACATTTGCTGAGTCTGAGACTGCTTCAGATTTCATGTATTTAGTATGCGTCTGCCGTCTGTATTTGTATTTTTAAATTAGAAATCTTGGTTGGCTCAATCCTAGTTTCCTTTTAATTGCAGTTTTTGGTCTAAAACTTTTTTTACTTTATTGAGCTGATGAGAGAATAAATAACTTTATTACAAGCTTTATTTTGATGTGAACAATTGCTTTAGGTAAGACTAGATCAATGATAAACACATTTTGTGATATCAGGAAATTTCTCCTTTTTTGGTTGTAGAATTAGTATATACACTGACGCGGTTCTTCAGCCTTACATTCAATATTAGCCATGAATACCGTAGTAGTGTTCACATTTTCTTTTCGTGAATATGACTGGATGGTTTAGACTTCAGTGATCATTTGAAATTATTGATGTATCAACAGACTCCATGTTTGTCAGCTTTGAAGTAGCTTCAGCTCCTAAGAGCACTCACTACATAGGAAACAGTTCCTAACAGGATGACAACATGCTCTTTCAAGTTTATTAACGTGGATAATTCTTTCGTTACAATATGCCGTTTGTTATACTCTGAGTGCTATCTTTAATATTTTGAAAATGGGGTAGAGTTCAGCTAGAGAAAGACCAATAATATGCAATTATTGTTTTTCTTCTTGACGTATATGATATTGATTTTTTTCCCCAGAATTCAGTTGGTTTCTAAGATCACTTCTGGTGCTAGCCTTTTTATTAGTTATTCTGGTAGACCCCCAGCCAATGTATTTTTCTTTAAATGGAGTTCCTGATAAAGCTACGTAAAGACTCTTATTGTTATTCCTATTTTATAAATATTATTTTGTTGAACTAAGAAAACATTGATGATTCCAGTTCAAAATTTTCAGCCGTATAAAGTTAGTTGAAAGAATAATTAGATACATCGTAGCTATCACACTTCCAAGTACTTGAGTCATTACTATTAGATTTTGTTAGAAGCTTGGCAAGACAGCACACTTGTTAGTATGATATTTAAGGGAGGAGTGCTAAAATGTAGACTTTCTAATACATCAGTTGTTTTCTTTTTGTGGCTTATATTTTACAATTATTACTACAGGTGTGTCTTTGGTGTTGGCATCACATAATGGACATGGCAGAAAAAGATGAGTCAGAGGGACGATGTCCTGCATGTCGAACAACATACGAAAAGGAGAAAGTTGTTAGAATGCAAACAAATATTGAGAGGTTTTTTCCCTTGTGACTAATTTACTTTTTATGGTGTATGGAGATAGAATATAACTGACAGTTGGCTTCTAACAGGGCAGGGAACAACAATGCCAATAGGAAAAGCAAACAACAACCAAAGGCAAAGCCAAAAACTAATGAAGCCAAGAAGGATCTCACGAATGTTCGGGTCATTCAACGTAAAATGGCATATGTGATTGGCCTGCCTCTAAGTCTTGCAGATGAAGATGTATGGAGTTATTTTCCATGTTACCCGTTGCTAATTTCTTTTTGATGAAGTAATTGGTTTTGTTAATTCTAAATTTTATTGACCCTGGAATTATAGGAAAAAATCTTCTTGTCCATCTCTCTCCTGATAATTTTTATTCTTGAGCAGCTTTTACAGCGGAAGGAATATTTTGGGCAGTATGGAAAAGTTACCAAAATTTCTCTCTCTAGGACAACTGGTGGTGCCATCCAGCAATTTGTTAATGATACTTGTAGTGTGTGAGTAATGCTACATGTCTTGGTTATCATGGCTTGTTTAGGTTTTTATTAATGAGAGATTTGCTCTTACGGGCTCTTTGTTTCCTTTAGATTCAACTAGTCCAAGTTTTGTCTTAAAAGGCGGGGACTTTATATTTTATTTTTCTCTGGTGCTATTACCTTAATATGTTCCCATTACTTCATCCTGATTTTCCCTTGTTTGGATCTTATTACTTTGTTTAGGTCAATATTATTTATCTCATGTTGCAATGGTCTAATGTCTTGGGTTTCTTCCTAAATTTGTCTTGCAGACAATTGTTTTTGTTTTGCTGAAACTGGGTACATATTCAGCACAATCTTATTGCTGCTTCATCAGTTACATGATATGTTTACCTATGAAATTTCTTTTTGCTGAAAGCTGTTACATTATCCTTACTTATCTTAATACCAACATAAGGTGCTAGATTGTAGAATCCTTTCAATTGTAGGTGCTTGTACCCTAAGCTGCCCAATTTTCCAGTTAATCTTTGGGTTAACAATTAAAATCTGGATATGTATTTCCAAACTCTTCTAGTACAGAAGCTCAAATCATTGAACTTCTCATGAAGAAATTTCCAAATTGAGGTTCAAAGGGCAAACCAGTTTGTCACAATTTAGACATGTTTGGGTTGTTGGATATTACGAGAGCTCATAATCATTTACTTGCTATTCCTATTTAAATTATTTCAAACAAAATTCATTTAGGATGTTGCAAGATGATAACTTTGATTGTATCAGTAGTTGAGACTTGAGAGAGGTGAAATTGGTGGCATTTAATTCAAAGGTGGCTTAGCCATGATACATGATCAGTAAGAGGCTAGAAGCCTAGAACTATAGGAGTTATTAAAATACTTCGGTGCTGAAACTGCATGTGGGGGAAAATAGAAGGTTTGATTGAATGTCTCTGTTTGGATTTGTTTTAGTACTATTGAAGTCAGAACTGTTTTGACTCTTGGTGTATTCAGTTATTCTTCACAATTTCATATACTTGTGCATTTCTAGAGTGTGCATAATTTGCTGTTCAATTTTGGTTTGATTGCATTCCCCCCCTCAGGATTGTCATTCTCATATTTGATCATTTTCTGCTTCTTGTTTTTTGCAGATATATTACATATTCAAAAGAAGAGGAGGCCGTGCGGTGTATTCAGTTTGTACATGGTTTTGTCTTGGAAGATAGATATTTGAGGTAAGCATCTACCCCTTTCTTTTGTTTCCTTGGTCAGTGATGTATACTTTGATTTTCCTTACATTAAAAATGGCCTATGCAGAGCATCATTTGGGACTGCAAAATACTGCCATGCGTGGTTGAGAAACACGGTATGGACTGTGGTCTGTTTGTGATCACTATTCCTCTTGTCACTCCCTTTGTGGGAGCATGTTAAAGTTTGCTGAACAAATGAATAACCAGTGTTGACATGCTCCTTTTCTTTTGCGCAGCCTTGCAGTAATCCGTCTTGTCTATATTTGCATAGCATTGGTGCTGATGAAGATAGCTTTGGCAAAGATGACGTAGCTGCGATTCA</genome_strand>
        <mrna_strand>AGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTCTGCCTTTCTCTCCATCAGAAAAAAGTTCACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATCATGAGCAACGAAGAAGAGAAAAGATGTCCTCTGTGTGCTGAAGAGATGGACTGGACAGATCAGCAGTTTAAGCCTTGCAAATGTGGTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCTTTGGTGTTGGCATCACATAATGGACATGGCAGAAAAAGATGAGTCAGAGGGACGATGTCCTGCATGTCGAACAACATACGAAAAGGAGAAAGTTGTTAGAATGCAAACAAATATTGAGAG...........................................................................GGCAGGGAACAACAATGCCAATAGGAAAAGCAAACAACAACCAAAAGCAAAGCAAAAAACTAATGAAGCCAAGAAGGATCTCACGAATGTTCGGGTCATTCAACGTAAAATGGCATATGTGATTGGCCTGCCTCTAAGTCTTGCAGATGAAGAT...................................................................................................................................................CTTTTACAGCGGAAGGAATATTTTGGGCAGTATGGAAAAGTTACCAAAATTTCTCTCTCTCGGACAACTGGTGGTGCCATCCAGCAATTTGTTAATGATACTTGTAGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTACATATTCAAAAGAAGAGGAGGCCGTGCGGTGTATTCAGTTTGTACATGGTTTTGTCTTGGAAGATAGATATTTGAG..................................................................................AGCATCATTTGGGACTGCAAAATACTGCCATGCGTGGTTGAGAAACACG........................................................................................................................CCTTGCAGTAATCCGTCTTGTCTATATTTGCATAGCATTGGTGCTGATGAAGATAGCTTTGGTAAAGATGATGTAGCTGCGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364200" ref_strand="+" ref_description="SGN-E364200 [cLPP-16-F4]">
      <seq>gagaactagtctcgagtttttttttttttttttttttctgcctttctctccatcagaaaaaagttcactggcaatcatgagcaacgaagaagagaaaagatgtcctctgtgtgctgaagagatggactggacagatcagcagtttaagccttgcaaatgtggttatcaggtgtgtctttggtgttggcatcacataatggacatggcagaaaaagatgagtcagagggacgatgtcctgcatgtcgaacaacatacgaaaaggagaaagttgttagaatgcaaacaaatattgagagggcagggaacaacaatgccaataggaaaagcaaacaacaaccaaaagcaaagcaaaaaactaatgaagccaagaaggatctcacgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="50696" stop="164218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161695" g_stop="161763" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.696"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="161764" i_stop="162203" i_length="440">
            <donor d_prob="0.993" d_score="0.84"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="162204" g_stop="162303" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="169" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="162304" i_stop="163627" i_length="1324">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="163628" g_stop="163755" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="297" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="163756" i_stop="163830" i_length="75">
            <donor d_prob="0.763" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="163831" g_stop="163918" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="385" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E364200" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161695" e_stop="161763"/>
          <exon e_start="162204" e_stop="162303"/>
          <exon e_start="163628" e_stop="163755"/>
          <exon e_start="163831" e_stop="163918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGCCTCTCTCTCTCTCTCCTCTTTCTCTCTCTTTCTGCCTTTCTCTTCATCAGAAAAAAGTTCACTGTAAGTTTTTTTTTTTCAGTTTTCTGCAAATCTGAGCTTTTCAAAACCCTAACTATTGAAGAATTCGGAAATGTATGTGTGGATTTTTGTTTTTGTTTTGTTAATTTTTTGTGTTGTGTGGAAATGCGGATGATTATATGAATGTACATGTATGATTTATTTATTATTGTTTTTGGTGTGTGAATCGTATAGCTAGATTTGTTAATTGAATGCGTTGAATCTATGTTTTTGTTTTTTTTTTTGAATTTTCTGATCTGTTGTGGAAATGTTGGTGTGTTACCTGTAGATTAGGGTTTTGAAGTTTTTTTTTTATTTGTTGTTTTAATAAATGTGTACTAGGTTGGAGGAAATGTAGGTGAAGAGTATTAATGTGTGAAGATGTTTGTTGTAGTAGAATTAATTGAATGTGATTTTAAAATAGTTTTTGGAATTGATTGCAGGGCAATCATGAGCAACGAAGAAGAGAAAAGATGTCCTCTGTGTGCTGAAGAGATGGACTGGACAGATCAGCAGTTTAAGCCTTGCAAATGTGGTTATCAGGTATAGATTCTTTGGGTTTTTTCTTTTGTTTTTGAATTTTTCCTGTTATTTATTTTGGTTGAGATATGGCATGTGTTGGTTCTGGTTGGTAGATAGTGCTACTGGTATTGAATATATGTTATAATCGAACTGGTATGAACTGAATTTCACTTTAAAAAATTATTTTAGCTGAACTAGTTTGCTATTATCTGGCGATTATAGAAGATTTTTACATTTCTGTGCGAAGTTATGTAGACATTTGCTGAGTCTGAGACTGCTTCAGATTTCATGTATTTAGTATGCGTCTGCCGTCTGTATTTGTATTTTTAAATTAGAAATCTTGGTTGGCTCAATCCTAGTTTCCTTTTAATTGCAGTTTTTGGTCTAAAACTTTTTTTACTTTATTGAGCTGATGAGAGAATAAATAACTTTATTACAAGCTTTATTTTGATGTGAACAATTGCTTTAGGTAAGACTAGATCAATGATAAACACATTTTGTGATATCAGGAAATTTCTCCTTTTTTGGTTGTAGAATTAGTATATACACTGACGCGGTTCTTCAGCCTTACATTCAATATTAGCCATGAATACCGTAGTAGTGTTCACATTTTCTTTTCGTGAATATGACTGGATGGTTTAGACTTCAGTGATCATTTGAAATTATTGATGTATCAACAGACTCCATGTTTGTCAGCTTTGAAGTAGCTTCAGCTCCTAAGAGCACTCACTACATAGGAAACAGTTCCTAACAGGATGACAACATGCTCTTTCAAGTTTATTAACGTGGATAATTCTTTCGTTACAATATGCCGTTTGTTATACTCTGAGTGCTATCTTTAATATTTTGAAAATGGGGTAGAGTTCAGCTAGAGAAAGACCAATAATATGCAATTATTGTTTTTCTTCTTGACGTATATGATATTGATTTTTTTCCCCAGAATTCAGTTGGTTTCTAAGATCACTTCTGGTGCTAGCCTTTTTATTAGTTATTCTGGTAGACCCCCAGCCAATGTATTTTTCTTTAAATGGAGTTCCTGATAAAGCTACGTAAAGACTCTTATTGTTATTCCTATTTTATAAATATTATTTTGTTGAACTAAGAAAACATTGATGATTCCAGTTCAAAATTTTCAGCCGTATAAAGTTAGTTGAAAGAATAATTAGATACATCGTAGCTATCACACTTCCAAGTACTTGAGTCATTACTATTAGATTTTGTTAGAAGCTTGGCAAGACAGCACACTTGTTAGTATGATATTTAAGGGAGGAGTGCTAAAATGTAGACTTTCTAATACATCAGTTGTTTTCTTTTTGTGGCTTATATTTTACAATTATTACTACAGGTGTGTCTTTGGTGTTGGCATCACATAATGGACATGGCAGAAAAAGATGAGTCAGAGGGACGATGTCCTGCATGTCGAACAACATACGAAAAGGAGAAAGTTGTTAGAATGCAAACAAATATTGAGAGGTTTTTTCCCTTGTGACTAATTTACTTTTTATGGTGTATGGAGATAGAATATAACTGACAGTTGGCTTCTAACAGGGCAGGGAACAACAATGCCAATAGGAAAAGCAAACAACAACCAAAGGCAAAGCCAAAAACTAATGAAGCCAAGAAGGATCTCACGAAT</genome_strand>
        <mrna_strand>GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTCTGCCTTTCTCTCCATCAGAAAAAAGTTCACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATCATGAGCAACGAAGAAGAGAAAAGATGTCCTCTGTGTGCTGAAGAGATGGACTGGACAGATCAGCAGTTTAAGCCTTGCAAATGTGGTTATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCTTTGGTGTTGGCATCACATAATGGACATGGCAGAAAAAGATGAGTCAGAGGGACGATGTCCTGCATGTCGAACAACATACGAAAAGGAGAAAGTTGTTAGAATGCAAACAAATATTGAGAG...........................................................................GGCAGGGAACAACAATGCCAATAGGAAAAGCAAACAACAACCAAAAGCAAAGCAAAAAACTAATGAAGCCAAGAAGGATCTCACGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361210" ref_strand="+" ref_description="SGN-E361210 [cLPP-15-E1]">
      <seq>tctctctctcctctttctctctctttctgcctgtctctccatcagaaaaaagttcactggcaatcatgagcaacgaagaagagaaaagatgtcctctgtgtgctgaagacatggactggacagatcagcagtttaagccttgcaaatgtggttatcatgtgtgtctttggtgttggcatcacataatggacatggcagaaaaagatgattcagagggacgatgtcctgcatgtcgaacaacatacgaaaaggagaaagttgtttgaatgcaaacaaatattgagagggcagggaacaacaatgccaattggaaaagcaaacagcaaccataagcgaagcataaaactaatgaagccaagaaggatctcacgaatgttcgggtcattcaacgtaaaatggcatatgtgattggcctgcctctaagtcttgcagatgaagatcttttacagcggaaggaatatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="161406" stop="164455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="161706" g_stop="161763" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="161764" i_stop="162203" i_length="440">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="162204" g_stop="162303" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="158" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="162304" i_stop="163627" i_length="1324">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="163628" g_stop="163755" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="286" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="163756" i_stop="163830" i_length="75">
            <donor d_prob="0.763" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="163831" g_stop="163984" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="440" r_length="154" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="163985" i_stop="164131" i_length="147">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="164132" g_stop="164155" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="464" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E361210" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="161706" e_stop="161763"/>
          <exon e_start="162204" e_stop="162303"/>
          <exon e_start="163628" e_stop="163755"/>
          <exon e_start="163831" e_stop="163984"/>
          <exon e_start="164132" e_stop="164155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCCTCTTTCTCTCTCTTTCTGCCTTTCTCTTCATCAGAAAAAAGTTCACTGTAAGTTTTTTTTTTTCAGTTTTCTGCAAATCTGAGCTTTTCAAAACCCTAACTATTGAAGAATTCGGAAATGTATGTGTGGATTTTTGTTTTTGTTTTGTTAATTTTTTGTGTTGTGTGGAAATGCGGATGATTATATGAATGTACATGTATGATTTATTTATTATTGTTTTTGGTGTGTGAATCGTATAGCTAGATTTGTTAATTGAATGCGTTGAATCTATGTTTTTGTTTTTTTTTTTGAATTTTCTGATCTGTTGTGGAAATGTTGGTGTGTTACCTGTAGATTAGGGTTTTGAAGTTTTTTTTTTATTTGTTGTTTTAATAAATGTGTACTAGGTTGGAGGAAATGTAGGTGAAGAGTATTAATGTGTGAAGATGTTTGTTGTAGTAGAATTAATTGAATGTGATTTTAAAATAGTTTTTGGAATTGATTGCAGGGCAATCATGAGCAACGAAGAAGAGAAAAGATGTCCTCTGTGTGCTGAAGAGATGGACTGGACAGATCAGCAGTTTAAGCCTTGCAAATGTGGTTATCAGGTATAGATTCTTTGGGTTTTTTCTTTTGTTTTTGAATTTTTCCTGTTATTTATTTTGGTTGAGATATGGCATGTGTTGGTTCTGGTTGGTAGATAGTGCTACTGGTATTGAATATATGTTATAATCGAACTGGTATGAACTGAATTTCACTTTAAAAAATTATTTTAGCTGAACTAGTTTGCTATTATCTGGCGATTATAGAAGATTTTTACATTTCTGTGCGAAGTTATGTAGACATTTGCTGAGTCTGAGACTGCTTCAGATTTCATGTATTTAGTATGCGTCTGCCGTCTGTATTTGTATTTTTAAATTAGAAATCTTGGTTGGCTCAATCCTAGTTTCCTTTTAATTGCAGTTTTTGGTCTAAAACTTTTTTTACTTTATTGAGCTGATGAGAGAATAAATAACTTTATTACAAGCTTTATTTTGATGTGAACAATTGCTTTAGGTAAGACTAGATCAATGATAAACACATTTTGTGATATCAGGAAATTTCTCCTTTTTTGGTTGTAGAATTAGTATATACACTGACGCGGTTCTTCAGCCTTACATTCAATATTAGCCATGAATACCGTAGTAGTGTTCACATTTTCTTTTCGTGAATATGACTGGATGGTTTAGACTTCAGTGATCATTTGAAATTATTGATGTATCAACAGACTCCATGTTTGTCAGCTTTGAAGTAGCTTCAGCTCCTAAGAGCACTCACTACATAGGAAACAGTTCCTAACAGGATGACAACATGCTCTTTCAAGTTTATTAACGTGGATAATTCTTTCGTTACAATATGCCGTTTGTTATACTCTGAGTGCTATCTTTAATATTTTGAAAATGGGGTAGAGTTCAGCTAGAGAAAGACCAATAATATGCAATTATTGTTTTTCTTCTTGACGTATATGATATTGATTTTTTTCCCCAGAATTCAGTTGGTTTCTAAGATCACTTCTGGTGCTAGCCTTTTTATTAGTTATTCTGGTAGACCCCCAGCCAATGTATTTTTCTTTAAATGGAGTTCCTGATAAAGCTACGTAAAGACTCTTATTGTTATTCCTATTTTATAAATATTATTTTGTTGAACTAAGAAAACATTGATGATTCCAGTTCAAAATTTTCAGCCGTATAAAGTTAGTTGAAAGAATAATTAGATACATCGTAGCTATCACACTTCCAAGTACTTGAGTCATTACTATTAGATTTTGTTAGAAGCTTGGCAAGACAGCACACTTGTTAGTATGATATTTAAGGGAGGAGTGCTAAAATGTAGACTTTCTAATACATCAGTTGTTTTCTTTTTGTGGCTTATATTTTACAATTATTACTACAGGTGTGTCTTTGGTGTTGGCATCACATAATGGACATGGCAGAAAAAGATGAGTCAGAGGGACGATGTCCTGCATGTCGAACAACATACGAAAAGGAGAAAGTTGTTAGAATGCAAACAAATATTGAGAGGTTTTTTCCCTTGTGACTAATTTACTTTTTATGGTGTATGGAGATAGAATATAACTGACAGTTGGCTTCTAACAGGGCAGGGAACAACAATGCCAATAGGAAAAGCAAACAACAACCAAAGGCAAAGCCAAAAACTAATGAAGCCAAGAAGGATCTCACGAATGTTCGGGTCATTCAACGTAAAATGGCATATGTGATTGGCCTGCCTCTAAGTCTTGCAGATGAAGATGTATGGAGTTATTTTCCATGTTACCCGTTGCTAATTTCTTTTTGATGAAGTAATTGGTTTTGTTAATTCTAAATTTTATTGACCCTGGAATTATAGGAAAAAATCTTCTTGTCCATCTCTCTCCTGATAATTTTTATTCTTGAGCAGCTTTTACAGCGGAAGGAATATTTT</genome_strand>
        <mrna_strand>TCTCTCTCTCCTCTTTCTCTCTCTTTCTGCCTGTCTCTCCATCAGAAAAAAGTTCACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATCATGAGCAACGAAGAAGAGAAAAGATGTCCTCTGTGTGCTGAAGACATGGACTGGACAGATCAGCAGTTTAAGCCTTGCAAATGTGGTTATCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCTTTGGTGTTGGCATCACATAATGGACATGGCAGAAAAAGATGATTCAGAGGGACGATGTCCTGCATGTCGAACAACATACGAAAAGGAGAAAGTTGTTTGAATGCAAACAAATATTGAGAG...........................................................................GGCAGGGAACAACAATGCCAATTGGAAAAGCAAACAGCAACCATAAGCGAAGCATAAAACTAATGAAGCCAAGAAGGATCTCACGAATGTTCGGGTCATTCAACGTAAAATGGCATATGTGATTGGCCTGCCTCTAAGTCTTGCAGATGAAGAT...................................................................................................................................................CTTTTACAGCGGAAGGAATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739089" ref_strand="+" ref_description="SGN-E739089 [LC16AD03]">
      <seq>attctacgtaaaatggcatatgtgattggcctgcctctaagtcttgcagatgaagatcttttacagcggaaggaatattttgggcagtatggaaaagttaccaaaatttctctctctaggacaactggtggtgccatccagcaatttgttaatgatacttgtagtgtatatattacatattcaaaagaagaggaggccgtgcggtgtattcagtttgtacatggttttgtcttggaagatagatatttgagagcatcatttgggactgcaaaatactgccatgcgtggttgagaaacacgccttgcagtaatccgtcttgtctatatttgcatagcattggtgctgatgaagatagctttggcaaagatgacgtagctgcgattcatacaaggaatagagttcaacaaatagctggtgacgccagtaatatgatgaatcgttcaggaaatgtcttgccacctccaattgatgaattatctagcactggctttacattgactgagacatctagcattagaaatgctgcaagtgatgcatcaaatgatacagtgaattacagtagctacatggctcatgtagttcctcatgataaggatggagacgctggtggaccaaacagaatgacaacgtttgttgatattgttggacggtacaatacttctggtgcagagagcgatggaaatagcacggaagattgtaggattttgaatttatcttctgacctatcttcagtaaccattagtaaagataatcatagacatgaaaaatatcctgataaaactttgttcaaggttccatcttcaaatcacattgtcaatcatccgcgaggcaacctaaattttgttgaattttcagatgaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="163628" stop="167809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="163928" g_stop="163984" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="163985" i_stop="164131" i_length="147">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="164132" g_stop="164241" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="167" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="164242" i_stop="165361" i_length="1120">
            <donor d_prob="0.478" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="165362" g_stop="165445" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="251" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="165446" i_stop="165527" i_length="82">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="165528" g_stop="165576" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="300" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="165577" i_stop="165696" i_length="120">
            <donor d_prob="0.462" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="165697" g_stop="165788" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="392" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="165789" i_stop="166878" i_length="1090">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="166879" g_stop="167017" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="531" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="167018" i_stop="167176" i_length="159">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="167177" g_stop="167509" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="864" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E739089" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="163928" e_stop="163984"/>
          <exon e_start="164132" e_stop="164241"/>
          <exon e_start="165362" e_stop="165445"/>
          <exon e_start="165528" e_stop="165576"/>
          <exon e_start="165697" e_stop="165788"/>
          <exon e_start="166879" e_stop="167017"/>
          <exon e_start="167177" e_stop="167509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAACGTAAAATGGCATATGTGATTGGCCTGCCTCTAAGTCTTGCAGATGAAGATGTATGGAGTTATTTTCCATGTTACCCGTTGCTAATTTCTTTTTGATGAAGTAATTGGTTTTGTTAATTCTAAATTTTATTGACCCTGGAATTATAGGAAAAAATCTTCTTGTCCATCTCTCTCCTGATAATTTTTATTCTTGAGCAGCTTTTACAGCGGAAGGAATATTTTGGGCAGTATGGAAAAGTTACCAAAATTTCTCTCTCTAGGACAACTGGTGGTGCCATCCAGCAATTTGTTAATGATACTTGTAGTGTGTGAGTAATGCTACATGTCTTGGTTATCATGGCTTGTTTAGGTTTTTATTAATGAGAGATTTGCTCTTACGGGCTCTTTGTTTCCTTTAGATTCAACTAGTCCAAGTTTTGTCTTAAAAGGCGGGGACTTTATATTTTATTTTTCTCTGGTGCTATTACCTTAATATGTTCCCATTACTTCATCCTGATTTTCCCTTGTTTGGATCTTATTACTTTGTTTAGGTCAATATTATTTATCTCATGTTGCAATGGTCTAATGTCTTGGGTTTCTTCCTAAATTTGTCTTGCAGACAATTGTTTTTGTTTTGCTGAAACTGGGTACATATTCAGCACAATCTTATTGCTGCTTCATCAGTTACATGATATGTTTACCTATGAAATTTCTTTTTGCTGAAAGCTGTTACATTATCCTTACTTATCTTAATACCAACATAAGGTGCTAGATTGTAGAATCCTTTCAATTGTAGGTGCTTGTACCCTAAGCTGCCCAATTTTCCAGTTAATCTTTGGGTTAACAATTAAAATCTGGATATGTATTTCCAAACTCTTCTAGTACAGAAGCTCAAATCATTGAACTTCTCATGAAGAAATTTCCAAATTGAGGTTCAAAGGGCAAACCAGTTTGTCACAATTTAGACATGTTTGGGTTGTTGGATATTACGAGAGCTCATAATCATTTACTTGCTATTCCTATTTAAATTATTTCAAACAAAATTCATTTAGGATGTTGCAAGATGATAACTTTGATTGTATCAGTAGTTGAGACTTGAGAGAGGTGAAATTGGTGGCATTTAATTCAAAGGTGGCTTAGCCATGATACATGATCAGTAAGAGGCTAGAAGCCTAGAACTATAGGAGTTATTAAAATACTTCGGTGCTGAAACTGCATGTGGGGGAAAATAGAAGGTTTGATTGAATGTCTCTGTTTGGATTTGTTTTAGTACTATTGAAGTCAGAACTGTTTTGACTCTTGGTGTATTCAGTTATTCTTCACAATTTCATATACTTGTGCATTTCTAGAGTGTGCATAATTTGCTGTTCAATTTTGGTTTGATTGCATTCCCCCCCTCAGGATTGTCATTCTCATATTTGATCATTTTCTGCTTCTTGTTTTTTGCAGATATATTACATATTCAAAAGAAGAGGAGGCCGTGCGGTGTATTCAGTTTGTACATGGTTTTGTCTTGGAAGATAGATATTTGAGGTAAGCATCTACCCCTTTCTTTTGTTTCCTTGGTCAGTGATGTATACTTTGATTTTCCTTACATTAAAAATGGCCTATGCAGAGCATCATTTGGGACTGCAAAATACTGCCATGCGTGGTTGAGAAACACGGTATGGACTGTGGTCTGTTTGTGATCACTATTCCTCTTGTCACTCCCTTTGTGGGAGCATGTTAAAGTTTGCTGAACAAATGAATAACCAGTGTTGACATGCTCCTTTTCTTTTGCGCAGCCTTGCAGTAATCCGTCTTGTCTATATTTGCATAGCATTGGTGCTGATGAAGATAGCTTTGGCAAAGATGACGTAGCTGCGATTCATACAAGGTATTCAAGATACAAAACTTCCCTCCAATACTGACGTGCTCCCTCTGATGTGCATATGTGATCTGAGGTTAATTTAGAGAGTAGTGTATGACTGCATCACCCGTAATAAACTATAGCTATCATATATTTCTAGTGTCCTCTTTTGGGTGGGATGAAACACAGTGCATAAAAGAAGAATCAGTTTTTCAGTTTTGCAATACATCCAATTGGTGTTCTGCAAGCTTTACAGGCAGAAACTGGTGTTCCAAGTATATGATTTTGATACTTGGTTGACAAGAATGATGTTCCTGTTGCACCCAAGTAGATATCATTTTGGTCAACTTGGTGTTGAAGGTCTCATGTTGCCAGTTCCAAAAAAAAGCATGGTGCTGAAGGTCTCTTGAAGGTCACTCTGCACATGCTAATATCCAGTGACACATTATTGCCTATTACTGTAACATGAATATATCTTCCTTGAGAATTGGTGAATGCCAACCTGTTTATTTTCTTGGTGAGATACGAAGGAATTTTCTATTATGGATAATAAATAATGAGGAGGTAGTTTGCATTTTCCCCTGTTTCCCATTTCTTGATATAATAGGCTGTGATGGCCTGTGCTAGCACAAGCCCAACATCGTAGACGTTGGAACTTTCATTGTTAATGGACTTAATTTTGATATGAAATTGCAAATAATGAAAATTAATACATGTGAGTGACCATCAAATTAGATATAGACATCATCACAGCACATAAACAGAGTTATTCTGTTTATAAATGAAATGACTAATATGCTCTCAGCTTGTAATTTAAATTCCATTGAATAGATATATCGAAACCTATAGCTGTTCTGTATAATATAAATAACTGCCTTGCCTTGGACAATGTCAATGTTTATTTCTTTTGCTAATTGAATGTTGACTCTTCTGATCTTCAATGATACTTTTTTCCCAAGGAATGCCTGCAGATTTGTTCTAGTGGACCTTAGAGGTTCCTGAAGTTTATATATTTCTGTAGTTGGTCTAACTGAAGGGTTTTATGTAATTGTTGCTTTGCATAGTAAAATTCTCCTGGGTATAGTCTCAGCATTGGTTTCATTTGTTGGTTATACAGGAATAGAGTTCAACAAATAGCTGGTGACGCCAGTAATATGATGAATCGTTCAGGAAATGTCTTGCCACCTCCAATTGATGAATTATCTAGCACTGGCTTTACATTGACTGAGACATCTAGCATTAGAAATGCTGCAAGTGTAAGAAACCTTGATGTTTAGTTCTGCATTAAGCAAAAGTATCTAAACATTTAGCTTCAGTTTCAGCACAAAAGTTGCTGTAGTTTTCTTTTATATACTGTATGGATTCTTTGGTTTGAACTGCAAAAATGTTCACCGAATGCTTTTTATTTGATTTAGGATGCATCAAATGATACAGTGAATTACAGTAGCTACATGGCTCATGTAGTTCCTCATGATAAGGATGGAGACGCTGGTGGACCAAACAGAATGACAACGTTTGTTGATATTGTTGGACGGTACAATACTTCTGGTGCAGAGAGCGATGGAAATAGCACGGAAGATTGTAGGATTTTGAATTTATCTTCTGACCTATCTTCAGTAACCATTAGTAAAGATAATCATAGACATGAAAAATATCCTGATAAAACTTTGTTCAAGGTTCCATCTTCAAATCACATTGTCAATCATCCGCGAGGCAACCTAAATTTTGTTGAATTTTCAGATGAACCT</genome_strand>
        <mrna_strand>ATTCTACGTAAAATGGCATATGTGATTGGCCTGCCTCTAAGTCTTGCAGATGAAGAT...................................................................................................................................................CTTTTACAGCGGAAGGAATATTTTGGGCAGTATGGAAAAGTTACCAAAATTTCTCTCTCTAGGACAACTGGTGGTGCCATCCAGCAATTTGTTAATGATACTTGTAGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTACATATTCAAAAGAAGAGGAGGCCGTGCGGTGTATTCAGTTTGTACATGGTTTTGTCTTGGAAGATAGATATTTGAG..................................................................................AGCATCATTTGGGACTGCAAAATACTGCCATGCGTGGTTGAGAAACACG........................................................................................................................CCTTGCAGTAATCCGTCTTGTCTATATTTGCATAGCATTGGTGCTGATGAAGATAGCTTTGGCAAAGATGACGTAGCTGCGATTCATACAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAGAGTTCAACAAATAGCTGGTGACGCCAGTAATATGATGAATCGTTCAGGAAATGTCTTGCCACCTCCAATTGATGAATTATCTAGCACTGGCTTTACATTGACTGAGACATCTAGCATTAGAAATGCTGCAAGT...............................................................................................................................................................GATGCATCAAATGATACAGTGAATTACAGTAGCTACATGGCTCATGTAGTTCCTCATGATAAGGATGGAGACGCTGGTGGACCAAACAGAATGACAACGTTTGTTGATATTGTTGGACGGTACAATACTTCTGGTGCAGAGAGCGATGGAAATAGCACGGAAGATTGTAGGATTTTGAATTTATCTTCTGACCTATCTTCAGTAACCATTAGTAAAGATAATCATAGACATGAAAAATATCCTGATAAAACTTTGTTCAAGGTTCCATCTTCAAATCACATTGTCAATCATCCGCGAGGCAACCTAAATTTTGTTGAATTTTCAGATGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441809" ref_strand="+" ref_description="SGN-E441809 [cSTA-31-I10]">
      <seq>tttgagagcatcatttgggactgcaaaatactgccatgcgtggttgagaaacacgccttgcagtaatccttcttgtctatatttgcatagcattggtgctgatgaagatagctttggcaaagatgatgtagctgcgattcatacaaggaatagagttcaacaaatagctggtgatgccagtaatatgatgaaccgttcaggaaatttgttgccacctccaattgatgaattatctagcactggctttacattgactgagacatctagcattagaaatgcagatgcatcaaatgatacagtgaattacagtagctacatggctcatgtaattcctcatgataaggatggagacgctggtggaccaaacagaatgactacttttgttgatattgtcggacggtacaatacttctggtgcagagagagatggaaatagcacggaagattgtaggattttgaatttatcttctgacctatcttcagtaaccattagcaaagataatcatagtcatgaaacatatcctgataaaattttgttcaaagttccatcttcaaatcacgttgtcaatcatccgcgaggcaacctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="165221" stop="167783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="165440" g_stop="165445" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="165446" i_stop="165527" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="165528" g_stop="165576" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="55" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="165577" i_stop="165696" i_length="120">
            <donor d_prob="0.462" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="165697" g_stop="165788" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="147" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="165789" i_stop="166878" i_length="1090">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="166879" g_stop="167011" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="280" r_length="133" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="167012" i_stop="167176" i_length="165">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="167177" g_stop="167483" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="587" r_length="307" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E441809" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="165440" e_stop="165445"/>
          <exon e_start="165528" e_stop="165576"/>
          <exon e_start="165697" e_stop="165788"/>
          <exon e_start="166879" e_stop="167011"/>
          <exon e_start="167177" e_stop="167483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGTAAGCATCTACCCCTTTCTTTTGTTTCCTTGGTCAGTGATGTATACTTTGATTTTCCTTACATTAAAAATGGCCTATGCAGAGCATCATTTGGGACTGCAAAATACTGCCATGCGTGGTTGAGAAACACGGTATGGACTGTGGTCTGTTTGTGATCACTATTCCTCTTGTCACTCCCTTTGTGGGAGCATGTTAAAGTTTGCTGAACAAATGAATAACCAGTGTTGACATGCTCCTTTTCTTTTGCGCAGCCTTGCAGTAATCCGTCTTGTCTATATTTGCATAGCATTGGTGCTGATGAAGATAGCTTTGGCAAAGATGACGTAGCTGCGATTCATACAAGGTATTCAAGATACAAAACTTCCCTCCAATACTGACGTGCTCCCTCTGATGTGCATATGTGATCTGAGGTTAATTTAGAGAGTAGTGTATGACTGCATCACCCGTAATAAACTATAGCTATCATATATTTCTAGTGTCCTCTTTTGGGTGGGATGAAACACAGTGCATAAAAGAAGAATCAGTTTTTCAGTTTTGCAATACATCCAATTGGTGTTCTGCAAGCTTTACAGGCAGAAACTGGTGTTCCAAGTATATGATTTTGATACTTGGTTGACAAGAATGATGTTCCTGTTGCACCCAAGTAGATATCATTTTGGTCAACTTGGTGTTGAAGGTCTCATGTTGCCAGTTCCAAAAAAAAGCATGGTGCTGAAGGTCTCTTGAAGGTCACTCTGCACATGCTAATATCCAGTGACACATTATTGCCTATTACTGTAACATGAATATATCTTCCTTGAGAATTGGTGAATGCCAACCTGTTTATTTTCTTGGTGAGATACGAAGGAATTTTCTATTATGGATAATAAATAATGAGGAGGTAGTTTGCATTTTCCCCTGTTTCCCATTTCTTGATATAATAGGCTGTGATGGCCTGTGCTAGCACAAGCCCAACATCGTAGACGTTGGAACTTTCATTGTTAATGGACTTAATTTTGATATGAAATTGCAAATAATGAAAATTAATACATGTGAGTGACCATCAAATTAGATATAGACATCATCACAGCACATAAACAGAGTTATTCTGTTTATAAATGAAATGACTAATATGCTCTCAGCTTGTAATTTAAATTCCATTGAATAGATATATCGAAACCTATAGCTGTTCTGTATAATATAAATAACTGCCTTGCCTTGGACAATGTCAATGTTTATTTCTTTTGCTAATTGAATGTTGACTCTTCTGATCTTCAATGATACTTTTTTCCCAAGGAATGCCTGCAGATTTGTTCTAGTGGACCTTAGAGGTTCCTGAAGTTTATATATTTCTGTAGTTGGTCTAACTGAAGGGTTTTATGTAATTGTTGCTTTGCATAGTAAAATTCTCCTGGGTATAGTCTCAGCATTGGTTTCATTTGTTGGTTATACAGGAATAGAGTTCAACAAATAGCTGGTGACGCCAGTAATATGATGAATCGTTCAGGAAATGTCTTGCCACCTCCAATTGATGAATTATCTAGCACTGGCTTTACATTGACTGAGACATCTAGCATTAGAAATGCTGCAAGTGTAAGAAACCTTGATGTTTAGTTCTGCATTAAGCAAAAGTATCTAAACATTTAGCTTCAGTTTCAGCACAAAAGTTGCTGTAGTTTTCTTTTATATACTGTATGGATTCTTTGGTTTGAACTGCAAAAATGTTCACCGAATGCTTTTTATTTGATTTAGGATGCATCAAATGATACAGTGAATTACAGTAGCTACATGGCTCATGTAGTTCCTCATGATAAGGATGGAGACGCTGGTGGACCAAACAGAATGACAACGTTTGTTGATATTGTTGGACGGTACAATACTTCTGGTGCAGAGAGCGATGGAAATAGCACGGAAGATTGTAGGATTTTGAATTTATCTTCTGACCTATCTTCAGTAACCATTAGTAAAGATAATCATAGACATGAAAAATATCCTGATAAAACTTTGTTCAAGGTTCCATCTTCAAATCACATTGTCAATCATCCGCGAGGCAACCTAA</genome_strand>
        <mrna_strand>TTTGAG..................................................................................AGCATCATTTGGGACTGCAAAATACTGCCATGCGTGGTTGAGAAACACG........................................................................................................................CCTTGCAGTAATCCTTCTTGTCTATATTTGCATAGCATTGGTGCTGATGAAGATAGCTTTGGCAAAGATGATGTAGCTGCGATTCATACAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAGAGTTCAACAAATAGCTGGTGATGCCAGTAATATGATGAACCGTTCAGGAAATTTGTTGCCACCTCCAATTGATGAATTATCTAGCACTGGCTTTACATTGACTGAGACATCTAGCATTAGAAATGCA.....................................................................................................................................................................GATGCATCAAATGATACAGTGAATTACAGTAGCTACATGGCTCATGTAATTCCTCATGATAAGGATGGAGACGCTGGTGGACCAAACAGAATGACTACTTTTGTTGATATTGTCGGACGGTACAATACTTCTGGTGCAGAGAGAGATGGAAATAGCACGGAAGATTGTAGGATTTTGAATTTATCTTCTGACCTATCTTCAGTAACCATTAGCAAAGATAATCATAGTCATGAAACATATCCTGATAAAATTTTGTTCAAAGTTCCATCTTCAAATCACGTTGTCAATCATCCGCGAGGCAACCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441810" ref_strand="+" ref_description="SGN-E441810 [cSTA-31-I10]">
      <seq>tttgagagcatcatttgggactgcaaaatactgccatgcgtggttgagaaacacgccttgcagtaatccttcttgtctatatttgcatagcattggtgctgatgaagatagctttggcaaagatgatgtagctgcgattcatacaaggaatagagttcaacaaatagctggtgatgccagtaatatgatgaaccgttcaggaaatttgttgccacctccaattgatgaattatctagcactggctttacattgactgagacatctagcattagaaatgcagatgcatcaaatgatacagtgaattacagtagctacatggctcatgtaattcctcatgataaggatggagacgctggtggaccaaacagaatgactacttttgttgatattgtcggacggtacaatacttctggtgcagagagagatggaaatagcacggaagattgtaggattttgaatttatcttctgacctatcttcagtaaccattagcaaagataatcatagtcatgaaacatatcctgataaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="165221" stop="167730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="165440" g_stop="165445" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="165446" i_stop="165527" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="165528" g_stop="165576" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="55" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="165577" i_stop="165696" i_length="120">
            <donor d_prob="0.462" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="165697" g_stop="165788" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="147" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="165789" i_stop="166878" i_length="1090">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="166879" g_stop="167011" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="280" r_length="133" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="167012" i_stop="167176" i_length="165">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="167177" g_stop="167430" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="534" r_length="254" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E441810" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="165440" e_stop="165445"/>
          <exon e_start="165528" e_stop="165576"/>
          <exon e_start="165697" e_stop="165788"/>
          <exon e_start="166879" e_stop="167011"/>
          <exon e_start="167177" e_stop="167430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGGTAAGCATCTACCCCTTTCTTTTGTTTCCTTGGTCAGTGATGTATACTTTGATTTTCCTTACATTAAAAATGGCCTATGCAGAGCATCATTTGGGACTGCAAAATACTGCCATGCGTGGTTGAGAAACACGGTATGGACTGTGGTCTGTTTGTGATCACTATTCCTCTTGTCACTCCCTTTGTGGGAGCATGTTAAAGTTTGCTGAACAAATGAATAACCAGTGTTGACATGCTCCTTTTCTTTTGCGCAGCCTTGCAGTAATCCGTCTTGTCTATATTTGCATAGCATTGGTGCTGATGAAGATAGCTTTGGCAAAGATGACGTAGCTGCGATTCATACAAGGTATTCAAGATACAAAACTTCCCTCCAATACTGACGTGCTCCCTCTGATGTGCATATGTGATCTGAGGTTAATTTAGAGAGTAGTGTATGACTGCATCACCCGTAATAAACTATAGCTATCATATATTTCTAGTGTCCTCTTTTGGGTGGGATGAAACACAGTGCATAAAAGAAGAATCAGTTTTTCAGTTTTGCAATACATCCAATTGGTGTTCTGCAAGCTTTACAGGCAGAAACTGGTGTTCCAAGTATATGATTTTGATACTTGGTTGACAAGAATGATGTTCCTGTTGCACCCAAGTAGATATCATTTTGGTCAACTTGGTGTTGAAGGTCTCATGTTGCCAGTTCCAAAAAAAAGCATGGTGCTGAAGGTCTCTTGAAGGTCACTCTGCACATGCTAATATCCAGTGACACATTATTGCCTATTACTGTAACATGAATATATCTTCCTTGAGAATTGGTGAATGCCAACCTGTTTATTTTCTTGGTGAGATACGAAGGAATTTTCTATTATGGATAATAAATAATGAGGAGGTAGTTTGCATTTTCCCCTGTTTCCCATTTCTTGATATAATAGGCTGTGATGGCCTGTGCTAGCACAAGCCCAACATCGTAGACGTTGGAACTTTCATTGTTAATGGACTTAATTTTGATATGAAATTGCAAATAATGAAAATTAATACATGTGAGTGACCATCAAATTAGATATAGACATCATCACAGCACATAAACAGAGTTATTCTGTTTATAAATGAAATGACTAATATGCTCTCAGCTTGTAATTTAAATTCCATTGAATAGATATATCGAAACCTATAGCTGTTCTGTATAATATAAATAACTGCCTTGCCTTGGACAATGTCAATGTTTATTTCTTTTGCTAATTGAATGTTGACTCTTCTGATCTTCAATGATACTTTTTTCCCAAGGAATGCCTGCAGATTTGTTCTAGTGGACCTTAGAGGTTCCTGAAGTTTATATATTTCTGTAGTTGGTCTAACTGAAGGGTTTTATGTAATTGTTGCTTTGCATAGTAAAATTCTCCTGGGTATAGTCTCAGCATTGGTTTCATTTGTTGGTTATACAGGAATAGAGTTCAACAAATAGCTGGTGACGCCAGTAATATGATGAATCGTTCAGGAAATGTCTTGCCACCTCCAATTGATGAATTATCTAGCACTGGCTTTACATTGACTGAGACATCTAGCATTAGAAATGCTGCAAGTGTAAGAAACCTTGATGTTTAGTTCTGCATTAAGCAAAAGTATCTAAACATTTAGCTTCAGTTTCAGCACAAAAGTTGCTGTAGTTTTCTTTTATATACTGTATGGATTCTTTGGTTTGAACTGCAAAAATGTTCACCGAATGCTTTTTATTTGATTTAGGATGCATCAAATGATACAGTGAATTACAGTAGCTACATGGCTCATGTAGTTCCTCATGATAAGGATGGAGACGCTGGTGGACCAAACAGAATGACAACGTTTGTTGATATTGTTGGACGGTACAATACTTCTGGTGCAGAGAGCGATGGAAATAGCACGGAAGATTGTAGGATTTTGAATTTATCTTCTGACCTATCTTCAGTAACCATTAGTAAAGATAATCATAGACATGAAAAATATCCTGATAAAACTTT</genome_strand>
        <mrna_strand>TTTGAG..................................................................................AGCATCATTTGGGACTGCAAAATACTGCCATGCGTGGTTGAGAAACACG........................................................................................................................CCTTGCAGTAATCCTTCTTGTCTATATTTGCATAGCATTGGTGCTGATGAAGATAGCTTTGGCAAAGATGATGTAGCTGCGATTCATACAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAGAGTTCAACAAATAGCTGGTGATGCCAGTAATATGATGAACCGTTCAGGAAATTTGTTGCCACCTCCAATTGATGAATTATCTAGCACTGGCTTTACATTGACTGAGACATCTAGCATTAGAAATGCA.....................................................................................................................................................................GATGCATCAAATGATACAGTGAATTACAGTAGCTACATGGCTCATGTAATTCCTCATGATAAGGATGGAGACGCTGGTGGACCAAACAGAATGACTACTTTTGTTGATATTGTCGGACGGTACAATACTTCTGGTGCAGAGAGAGATGGAAATAGCACGGAAGATTGTAGGATTTTGAATTTATCTTCTGACCTATCTTCAGTAACCATTAGCAAAGATAATCATAGTCATGAAACATATCCTGATAAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407663" ref_strand="+" ref_description="SGN-E407663 [PPI-8-G23]">
      <seq>cttgcccacctccattgatgaattatctagcactggctttacattgacctgagacatctagcattagaaatgcagatgcatcaaatgacacagtgaattacagtagctacatggctcatgtaattcctcatgataaggatggagaccgctggtggaccaaacagaatgacctaccttttgttgatattgtcggacggtacaatacttctggtgcagagagagatggaaatagcatggaagattgtaggattttgaatttatcttctgacctatcttcagtaaccattagcaaagataatcatagtcatgaaacatatcctgataaaattttgttcaaagttccatcttcaaatcacgttgtcaatcatccgcgaggcaacctaaattttgttgaattttcagatgaaccttacagggaagattatacatcttttgacagtcaaggactgaaggatccaaataatatggatcaaaaggcttttcttatgccatcttgttctgctcaatccacagagaactctggtggtcgtttattagtacatatgccatgtagtctgagtagcaatagaatggattatggagctttacataatcaagtggatgaagcttctctgccactntcatgtgtaaatgcgatattaaatgaaggacttcatgacttgagtttccaaagttctgtcaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="166639" stop="168086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="166939" g_stop="167011" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="167012" i_stop="167176" i_length="165">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.960" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="167177" g_stop="167786" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="687" r_length="613" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E407663" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="166939" e_stop="167011"/>
          <exon e_start="167177" e_stop="167786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTG-CCACCTCCAATTGATGAATTATCTAGCACTGGCTTTACATTGA-CTGAGACATCTAGCATTAGAAATGCTGCAAGTGTAAGAAACCTTGATGTTTAGTTCTGCATTAAGCAAAAGTATCTAAACATTTAGCTTCAGTTTCAGCACAAAAGTTGCTGTAGTTTTCTTTTATATACTGTATGGATTCTTTGGTTTGAACTGCAAAAATGTTCACCGAATGCTTTTTATTTGATTTAGGATGCATCAAATGATACAGTGAATTACAGTAGCTACATGGCTCATGTAGTTCCTCATGATAAGGATGGAGA-CGCTGGTGGACCAAACAGAATGA-C-AACGTTTGTTGATATTGTTGGACGGTACAATACTTCTGGTGCAGAGAGCGATGGAAATAGCACGGAAGATTGTAGGATTTTGAATTTATCTTCTGACCTATCTTCAGTAACCATTAGTAAAGATAATCATAGACATGAAAAATATCCTGATAAAACTTTGTTCAAGGTTCCATCTTCAAATCACATTGTCAATCATCCGCGAGGCAACCTAAATTTTGTTGAATTTTCAGATGAACCTTACAGGGAAGATTATACATCTTTTGACAGTCAAGGACTGAAGGATCCAAATAACATGGATCAAAAGGCTTTTCTTATGCCATCTTGTTCTACTCAATCCACAGAGAACTCTGGTAGTCGTTTATTAGTACCTACGCCATGTAGTCTGAGTAGCAATGGAATGGATTATGGAGCTTTACATAATCAAGTGGATGAAGCTTCTCTGCCACATTCATGTGTAAATGCGATATTAAATGAAGGACTTCATGACTTGAAGTTCCAAAGTTCTGTCAAATCTG</genome_strand>
        <mrna_strand>CTTGCCCACCTCC-ATTGATGAATTATCTAGCACTGGCTTTACATTGACCTGAGACATCTAGCATTAGAAATGCA.....................................................................................................................................................................GATGCATCAAATGACACAGTGAATTACAGTAGCTACATGGCTCATGTAATTCCTCATGATAAGGATGGAGACCGCTGGTGGACCAAACAGAATGACCTACCTTTTGTTGATATTGTCGGACGGTACAATACTTCTGGTGCAGAGAGAGATGGAAATAGCATGGAAGATTGTAGGATTTTGAATTTATCTTCTGACCTATCTTCAGTAACCATTAGCAAAGATAATCATAGTCATGAAACATATCCTGATAAAATTTTGTTCAAAGTTCCATCTTCAAATCACGTTGTCAATCATCCGCGAGGCAACCTAAATTTTGTTGAATTTTCAGATGAACCTTACAGGGAAGATTATACATCTTTTGACAGTCAAGGACTGAAGGATCCAAATAATATGGATCAAAAGGCTTTTCTTATGCCATCTTGTTCTGCTCAATCCACAGAGAACTCTGGTGGTCGTTTATTAGTACATATGCCATGTAGTCTGAGTAGCAATAGAATGGATTATGGAGCTTTACATAATCAAGTGGATGAAGCTTCTCTGCCACTNTCATGTGTAAATGCGATATTAAATGAAGGACTTCATGACTTGAGTTTCCAAAGTTCTGTCAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421330" ref_strand="+" ref_description="SGN-E421330 [STM-32-P1]">
      <seq>cttgccacctccaattgatgaattatctagcactggctttacattgactgagacatctagcattagaaatgcagatgcatcaaatgatacagtgaattacagtagctacatggctcatgtaattcctcatgataaggatggagacgctggtggaccaaacagaatgactacttttgttgatattgtcggacggtacaatacttctggtgcagagagagatggaaatagcatggaagattgtaggattttgaatttatcttctgacctatcttcagtaaccattagcaaagataatcatagtcatgaaacatatcctgataaaattttgttcaaagttccatcttcaaatcacgttgtcaatcatccgcgaggcaacctaaattttgttgaattttcagatgaaccttacagggaagattatacatcttttgacagtcaaagactgaaggatccaaataatatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="166639" stop="167868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="166939" g_stop="167011" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="167012" i_stop="167176" i_length="165">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="167177" g_stop="167568" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="465" r_length="392" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E421330" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="166939" e_stop="167011"/>
          <exon e_start="167177" e_stop="167568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCCACCTCCAATTGATGAATTATCTAGCACTGGCTTTACATTGACTGAGACATCTAGCATTAGAAATGCTGCAAGTGTAAGAAACCTTGATGTTTAGTTCTGCATTAAGCAAAAGTATCTAAACATTTAGCTTCAGTTTCAGCACAAAAGTTGCTGTAGTTTTCTTTTATATACTGTATGGATTCTTTGGTTTGAACTGCAAAAATGTTCACCGAATGCTTTTTATTTGATTTAGGATGCATCAAATGATACAGTGAATTACAGTAGCTACATGGCTCATGTAGTTCCTCATGATAAGGATGGAGACGCTGGTGGACCAAACAGAATGACAACGTTTGTTGATATTGTTGGACGGTACAATACTTCTGGTGCAGAGAGCGATGGAAATAGCACGGAAGATTGTAGGATTTTGAATTTATCTTCTGACCTATCTTCAGTAACCATTAGTAAAGATAATCATAGACATGAAAAATATCCTGATAAAACTTTGTTCAAGGTTCCATCTTCAAATCACATTGTCAATCATCCGCGAGGCAACCTAAATTTTGTTGAATTTTCAGATGAACCTTACAGGGAAGATTATACATCTTTTGACAGTCAAGGACTGAAGGATCCAAATAACATGGA</genome_strand>
        <mrna_strand>CTTGCCACCTCCAATTGATGAATTATCTAGCACTGGCTTTACATTGACTGAGACATCTAGCATTAGAAATGCA.....................................................................................................................................................................GATGCATCAAATGATACAGTGAATTACAGTAGCTACATGGCTCATGTAATTCCTCATGATAAGGATGGAGACGCTGGTGGACCAAACAGAATGACTACTTTTGTTGATATTGTCGGACGGTACAATACTTCTGGTGCAGAGAGAGATGGAAATAGCATGGAAGATTGTAGGATTTTGAATTTATCTTCTGACCTATCTTCAGTAACCATTAGCAAAGATAATCATAGTCATGAAACATATCCTGATAAAATTTTGTTCAAAGTTCCATCTTCAAATCACGTTGTCAATCATCCGCGAGGCAACCTAAATTTTGTTGAATTTTCAGATGAACCTTACAGGGAAGATTATACATCTTTTGACAGTCAAAGACTGAAGGATCCAAATAATATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740652" ref_strand="+" ref_description="SGN-E740652 [LC22BD10]">
      <seq>cttcattcaatgccatagaaagcagtgttatttcaaatattatgtcaaaggacttgaattcatgtgatgattcaatggccttgcgtcgtagttttgttggctcgtatggtgagtctgttgggaagcatggtgcttcctggaactctttgcacagcgaccaattagggttctcttttgtgaagcaagatgacttttccaggcaaggaggtgatttggagtcgtcttttagaaatattggtcagatatcaaagaattcgtccatccttcaggatttcggagaaaacaaggatcagtatgtgaacaaggctccctatcaaatcaccagaccaaaagtttcggctccacctgggttctcaatgcccccaagggacctgcctcacggttttgcctcatctgatgatataggaggaatgcctcgttctctttctggtagtcgtttagtaaatagttcatcaagtttgcttcacacaccatcaaccggaagcattagcagtgctggtgatatcgattttgttgaccctgccacatcagtctttggaaatggcaaaccaacaaatggttttgatatatcagccttggagatcgggtcagcttgtgtgccacagaggagagggtttgaagacgaagcaagaatctggcatcttatgcaacaaaaacctttagatcaagggaaattctctcaacgaattgcttctcaaacaccatccatgcatcagtcacgaaggcatcctagccatggcggagatgagtatcttggcctggatgatatatatggcttctcatcaaggatggtggatcaacaccaaagtttcaattcatcttcctattcacaatttccacagcagaagcttgcgacaaatgaccacatcttttatggcttccagcacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="167583" stop="169445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="167883" g_stop="168200" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="168201" i_stop="168776" i_length="576">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="168777" g_stop="168887" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="429" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="168888" i_stop="169023" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="169024" g_stop="169445" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="851" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E740652" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="167883" e_stop="168200"/>
          <exon e_start="168777" e_stop="168887"/>
          <exon e_start="169024" e_stop="169445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTCAATGCCATAGAAAGCAGTGTTATTTCAAATATTATGTCAAAGGACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAAGTAAGTGTTGGCAGGCTTTTCCTTATTTTATTTAGTAATACAGTTAGGTTTAGCTCCATTTCAACAAAAAAAACTTGAATTTAGCTCCCTGTATTATCTTCCATTGATTCTTTTTTCATTTTTTTGGGAATCAATTCGACCCTTGCTTGTCTATAGGTTTTCTATTCTTTGATTGTTAGAGAAAACCATGACACTAGCTTCAATTCTTAGCTTTGCTTATGTTACTGCATTAGTTGCTTTCAGTGTATATATATTAAGGTATTTGGTCATAGTTTTGACAATTTTTCTTGCTTATGTTGGATTGCTAGCTACCCTATCCTTGCTTAGTTTTGACAAGCTTTCTGGCTTCAATTATCCCTGCTTTGTTTGGTATTGCTCTAAAGGGTGAAGAAGAGATGAGTTTTCCAGGCTTCAAAATGTATTCCAATGAGGAAATACAAAGGGATTTAATTTGTATACGTGCATTTTCTCTGACCTCTATAACTTAACCTACCTAGTTGCTGCGCCATAGTGTTCTCTTTCATACTTGTGATTCAATTGATTATTGTATACTGAAATCTCTGAGCTGTCTAACAGTCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTGGTAACTCTCACATTTAAATTTCACAGTTACATTATAAGCTGTGTCTTGTTGTGAATGAAGTTAGTATATAGTTCTTATACTGCTATTTCTACAAGTAGCCGTTCAGTAAATAGTTCTTGTACTGCTATTTCTACAGGTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGCATCCTAGCCATGGCGGAGATGAGTATCTTGGCCTGGATGATATATATGGCTTCTCATCAAGGATGGTGGATCAACACCAAAGTTTCAATTCATCTTCCTATTCACAATTTCCACAGCAGAAGCTT</genome_strand>
        <mrna_strand>CTTCATTCAATGCCATAGAAAGCAGTGTTATTTCAAATATTATGTCAAAGGACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCAGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTG........................................................................................................................................GTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGCATCCTAGCCATGGCGGAGATGAGTATCTTGGCCTGGATGATATATATGGCTTCTCATCAAGGATGGTGGATCAACACCAAAGTTTCAATTCATCTTCCTATTCACAATTTCCACAGCAGAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540903" ref_strand="+" ref_description="SGN-E540903 [TUS-61-G17]">
      <seq>ggacttgaattcatgtgatgattcaatggccttgcgtcgtagttttgttggctcgtatggtgagtctgttgggaagcatggtgcttcctggaactctttgcacagcgaccaattagggttctcttttgtgaagcaagatgacttttcctggcaaggaggtgatttggagtcgtcttttagaaatattggtcagatatcaaagaattcgtccatccttcaggatttcggagaaaacaaggatcagtatgtgaacaaggctccctatcaaatcaccagaccaaaagtttcggctccacctgggttctcaatgcccccaagggacctgcctcacggttttgcctcatctgatgatataggaggaatgcctcgttctctttctggtagtcgtttagtaaatagttcatcaagtttgcttcacacaccatcaaccggaagcattagcagtgctggtgatatcgattttgttgaccctgccacatcagtctttggaaatggcaaaccaacaaatggttttgatatatcagccttggagatcgggtcagcttgtgtgccacagaggagagggtttgaagacgaagcaagaatctggcatcttatgcaacaaaaacctttagatcaagggaaattctctncacgaattgcttctcaaacaccatccatgcatcagtcacgaaggcatcctagccatggcggagatgagtatcttggcctggatgatatatatggcttctcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="167632" stop="169445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="167932" g_stop="168200" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="168201" i_stop="168776" i_length="576">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="168777" g_stop="168887" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="380" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="168888" i_stop="169023" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="169024" g_stop="169378" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="735" r_length="355" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E540903" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="167932" e_stop="168200"/>
          <exon e_start="168777" e_stop="168887"/>
          <exon e_start="169024" e_stop="169378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAAGTAAGTGTTGGCAGGCTTTTCCTTATTTTATTTAGTAATACAGTTAGGTTTAGCTCCATTTCAACAAAAAAAACTTGAATTTAGCTCCCTGTATTATCTTCCATTGATTCTTTTTTCATTTTTTTGGGAATCAATTCGACCCTTGCTTGTCTATAGGTTTTCTATTCTTTGATTGTTAGAGAAAACCATGACACTAGCTTCAATTCTTAGCTTTGCTTATGTTACTGCATTAGTTGCTTTCAGTGTATATATATTAAGGTATTTGGTCATAGTTTTGACAATTTTTCTTGCTTATGTTGGATTGCTAGCTACCCTATCCTTGCTTAGTTTTGACAAGCTTTCTGGCTTCAATTATCCCTGCTTTGTTTGGTATTGCTCTAAAGGGTGAAGAAGAGATGAGTTTTCCAGGCTTCAAAATGTATTCCAATGAGGAAATACAAAGGGATTTAATTTGTATACGTGCATTTTCTCTGACCTCTATAACTTAACCTACCTAGTTGCTGCGCCATAGTGTTCTCTTTCATACTTGTGATTCAATTGATTATTGTATACTGAAATCTCTGAGCTGTCTAACAGTCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTGGTAACTCTCACATTTAAATTTCACAGTTACATTATAAGCTGTGTCTTGTTGTGAATGAAGTTAGTATATAGTTCTTATACTGCTATTTCTACAAGTAGCCGTTCAGTAAATAGTTCTTGTACTGCTATTTCTACAGGTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGCATCCTAGCCATGGCGGAGATGAGTATCTTGGCCTGGATGATATATATGGCTTCTCATC</genome_strand>
        <mrna_strand>GGACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTG........................................................................................................................................GTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTNCACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGCATCCTAGCCATGGCGGAGATGAGTATCTTGGCCTGGATGATATATATGGCTTCTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405263" ref_strand="+" ref_description="SGN-E405263 [PPC-17-M7]">
      <seq>ggacttgaattcatgtgatgattcaatggccttgcgtcgtagttttgttggctcgtatggtgaatctgttgggaagcatggtgcttcctggaattctttgcacagcgaccaattagggttctcttttgtgaagcaagatgacttttccaggcaaggaggtgatttggagtcgtcttttagaaatattggtcagatgtcaaagaattcatccatccttcaggatttcagagagaacaaggatcagtatgtgcacaaggctccctatcaaatcaccagaccaaaagtttcggctccacctgggttctcaatgcccccaagggacctgcctcacggttttgcctcatctgatgatataggaggaatgcctcgtgctctctctggtagtcgtttagtaaatagttcttcatcaagtttgcttcacacaccatcaaccggaagcattagcagtgcaggtgatatcgattttgttgaccctgccacatcagtcttcggaaatggcaaaccaacaaatggttttgatatatcagccttggatattgggtcagcttgtgtgccacagaggagagggtttgaagatgaggcaagaatctggcatcttatgcaacaaaaatctttagatcaagggaaattctctcaacgaattgctttctcaacaccatccgtgcatcagtcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="167632" stop="169445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="167932" g_stop="168200" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="168201" i_stop="168776" i_length="576">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="168777" g_stop="168887" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="380" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="168888" i_stop="169023" i_length="136">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="169024" g_stop="169315" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="675" r_length="295" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E405263" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="167932" e_stop="168200"/>
          <exon e_start="168777" e_stop="168887"/>
          <exon e_start="169024" e_stop="169315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAAGTAAGTGTTGGCAGGCTTTTCCTTATTTTATTTAGTAATACAGTTAGGTTTAGCTCCATTTCAACAAAAAAAACTTGAATTTAGCTCCCTGTATTATCTTCCATTGATTCTTTTTTCATTTTTTTGGGAATCAATTCGACCCTTGCTTGTCTATAGGTTTTCTATTCTTTGATTGTTAGAGAAAACCATGACACTAGCTTCAATTCTTAGCTTTGCTTATGTTACTGCATTAGTTGCTTTCAGTGTATATATATTAAGGTATTTGGTCATAGTTTTGACAATTTTTCTTGCTTATGTTGGATTGCTAGCTACCCTATCCTTGCTTAGTTTTGACAAGCTTTCTGGCTTCAATTATCCCTGCTTTGTTTGGTATTGCTCTAAAGGGTGAAGAAGAGATGAGTTTTCCAGGCTTCAAAATGTATTCCAATGAGGAAATACAAAGGGATTTAATTTGTATACGTGCATTTTCTCTGACCTCTATAACTTAACCTACCTAGTTGCTGCGCCATAGTGTTCTCTTTCATACTTGTGATTCAATTGATTATTGTATACTGAAATCTCTGAGCTGTCTAACAGTCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTGGTAACTCTCACATTTAAATTTCACAGTTACATTATAAGCTGTGTCTTGTTGTGAATGAAGTTAGTATATAGTTCTTATACTGCTATTTCTACAAGTAGCCGTTCAGTAAATAGTTCTTGTACTGCTATTTCTACAGGTAGTCGTTTAGTAAATAG---TTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACG</genome_strand>
        <mrna_strand>GGACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAATCTGTTGGGAAGCATGGTGCTTCCTGGAATTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCAGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATGTCAAAGAATTCATCCATCCTTCAGGATTTCAGAGAGAACAAGGATCAGTATGTGCACAAGGCTCCCTATCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTGCTCTCTCTG........................................................................................................................................GTAGTCGTTTAGTAAATAGTTCTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCAGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTCGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGATATTGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGATGAGGCAAGAATCTGGCATCTTATGCAACAAAAATCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTTCTCAACACCATCCGTGCATCAGTCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290768" ref_strand="+" ref_description="SGN-E290768 [cLET-10-P19]">
      <seq>gacttgaattcatgtgatgattcaatggccttgcgtcgtagttttgttggctcgtatggtgagtctgttgggaagcatggtgcttcctggaactctttgcacagcgaccaattagggttctcttttgtgaagcaagatgacttttcctggcaaggaggtgatttggagtcgtcttttagaaatattggtcagatatcaaagaattcgtccatccttcaggatttcggagaaaacaaggatcagtatgtgaacaaggctccctatcaaatcaccagaccaaaagtttcggctccacctgggttctcaatgcccccaagggacctgcctcacggttttgcctcatctgatgatataggaggaatgcctcgttctctttctggtagtcgtttagtaaatagttcatcaagtttgcttcacacaccatcaaccggaagcattagcagtgctggtgatatcgattttgttgaccctgccacatcagtctttggaaatggcaaaccaacaaatgggtttgatatatcagccttggagatcgggtcagcttgtgtgccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="167633" stop="169445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="167933" g_stop="168200" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="168201" i_stop="168776" i_length="576">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="168777" g_stop="168887" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="379" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="168888" i_stop="169023" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="169024" g_stop="169197" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="553" r_length="174" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E290768" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="167933" e_stop="168200"/>
          <exon e_start="168777" e_stop="168887"/>
          <exon e_start="169024" e_stop="169197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAAGTAAGTGTTGGCAGGCTTTTCCTTATTTTATTTAGTAATACAGTTAGGTTTAGCTCCATTTCAACAAAAAAAACTTGAATTTAGCTCCCTGTATTATCTTCCATTGATTCTTTTTTCATTTTTTTGGGAATCAATTCGACCCTTGCTTGTCTATAGGTTTTCTATTCTTTGATTGTTAGAGAAAACCATGACACTAGCTTCAATTCTTAGCTTTGCTTATGTTACTGCATTAGTTGCTTTCAGTGTATATATATTAAGGTATTTGGTCATAGTTTTGACAATTTTTCTTGCTTATGTTGGATTGCTAGCTACCCTATCCTTGCTTAGTTTTGACAAGCTTTCTGGCTTCAATTATCCCTGCTTTGTTTGGTATTGCTCTAAAGGGTGAAGAAGAGATGAGTTTTCCAGGCTTCAAAATGTATTCCAATGAGGAAATACAAAGGGATTTAATTTGTATACGTGCATTTTCTCTGACCTCTATAACTTAACCTACCTAGTTGCTGCGCCATAGTGTTCTCTTTCATACTTGTGATTCAATTGATTATTGTATACTGAAATCTCTGAGCTGTCTAACAGTCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTGGTAACTCTCACATTTAAATTTCACAGTTACATTATAAGCTGTGTCTTGTTGTGAATGAAGTTAGTATATAGTTCTTATACTGCTATTTCTACAAGTAGCCGTTCAGTAAATAGTTCTTGTACTGCTATTTCTACAGGTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCAC</genome_strand>
        <mrna_strand>GACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTG........................................................................................................................................GTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGGTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362586" ref_strand="+" ref_description="SGN-E362586 [cLPP-1-D19]">
      <seq>ttttgtgaagcaagatgacttttccaggcaaggaggtgatttggagtcgtcttttagaaatattggtcagatatcaaagaattcgtccatccttcaggatttcagagaaaacaaggatcagtatgtgcacaaggctccctatcaaatcaccagaccaaaagtttcggctccacctgggttctcaatgcccccaagggacctgcctcacggttttgcctcatctgatgatataggaggaatgcctcgttctctttctggtagtcgtttagtaaatagttcttcatcaagtttgcttcacacaccatcaaccggaagcattagcagtgctggtgatgtcgattttgttgaccctgccccatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="167755" stop="169426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="168055" g_stop="168200" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="168201" i_stop="168776" i_length="576">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="168777" g_stop="168887" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="257" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="168888" i_stop="169023" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="169024" g_stop="169126" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="363" r_length="106" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E362586" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="168055" e_stop="168200"/>
          <exon e_start="168777" e_stop="168887"/>
          <exon e_start="169024" e_stop="169126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGAAGCAAGATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAAGTAAGTGTTGGCAGGCTTTTCCTTATTTTATTTAGTAATACAGTTAGGTTTAGCTCCATTTCAACAAAAAAAACTTGAATTTAGCTCCCTGTATTATCTTCCATTGATTCTTTTTTCATTTTTTTGGGAATCAATTCGACCCTTGCTTGTCTATAGGTTTTCTATTCTTTGATTGTTAGAGAAAACCATGACACTAGCTTCAATTCTTAGCTTTGCTTATGTTACTGCATTAGTTGCTTTCAGTGTATATATATTAAGGTATTTGGTCATAGTTTTGACAATTTTTCTTGCTTATGTTGGATTGCTAGCTACCCTATCCTTGCTTAGTTTTGACAAGCTTTCTGGCTTCAATTATCCCTGCTTTGTTTGGTATTGCTCTAAAGGGTGAAGAAGAGATGAGTTTTCCAGGCTTCAAAATGTATTCCAATGAGGAAATACAAAGGGATTTAATTTGTATACGTGCATTTTCTCTGACCTCTATAACTTAACCTACCTAGTTGCTGCGCCATAGTGTTCTCTTTCATACTTGTGATTCAATTGATTATTGTATACTGAAATCTCTGAGCTGTCTAACAGTCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTGGTAACTCTCACATTTAAATTTCACAGTTACATTATAAGCTGTGTCTTGTTGTGAATGAAGTTAGTATATAGTTCTTATACTGCTATTTCTACAAGTAGCCGTTCAGTAAATAGTTCTTGTACTGCTATTTCTACAGGTAGTCGTTTAGTAAATAG---TTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGT</genome_strand>
        <mrna_strand>TTTTGTGAAGCAAGATGACTTTTCCAGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCAGAGAAAACAAGGATCAGTATGTGCACAAGGCTCCCTATCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTG........................................................................................................................................GTAGTCGTTTAGTAAATAGTTCTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATGTCGATTTTGTTGACCCTGCCCCATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362463" ref_strand="+" ref_description="SGN-E362463 [cLPP-1-D7]">
      <seq>gagaactagtctcgagttctttatgacttttccaggctaggaggtgatttggagtcgtcttttagaaatattggtcagatatcaaagaattcgtccatccttcatgatttcagagaaaacaaggatcagtatgtgcacaaggctccctatcaaatcaccagaccaaaagtttcggctccacctgggttctcaatgcccccaagggacctgcctcacggttttgcctcatctgatgatataggaggaatgcctcgttctctttctggtagtcgtttactaaatagttcttcatcaagtttgcttcacacaccatcaaccggaagcattatcagtgctggtgatgtcgattttgttgaccctgccccatcagtctttggaaatggcaaaccaacaaatggttttgatatatcagccttggagatcgggtcagcttgtgtgccacagaggagagggtttgaagacgaggcaagaatctggcatcttatgcaacaaaaacctttagatcaagggaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0049A17-HaANi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0049A17.1" temp_strand="+" temp_description="C04HBa0049A17.1  CU329701.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0049A17 sequenced_by:sanger upload_account_name:uk">
        <position start="167769" stop="169445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="168069" g_stop="168200" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="154" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="168201" i_stop="168776" i_length="576">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="168777" g_stop="168887" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="265" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="168888" i_stop="169023" i_length="136">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="169024" g_stop="169271" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="516" r_length="251" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0049A17.1" gen_strand="+" ref_id="SGN-E362463" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0049A17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="168069" e_stop="168200"/>
          <exon e_start="168777" e_stop="168887"/>
          <exon e_start="169024" e_stop="169271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAAGTAAGTGTTGGCAGGCTTTTCCTTATTTTATTTAGTAATACAGTTAGGTTTAGCTCCATTTCAACAAAAAAAACTTGAATTTAGCTCCCTGTATTATCTTCCATTGATTCTTTTTTCATTTTTTTGGGAATCAATTCGACCCTTGCTTGTCTATAGGTTTTCTATTCTTTGATTGTTAGAGAAAACCATGACACTAGCTTCAATTCTTAGCTTTGCTTATGTTACTGCATTAGTTGCTTTCAGTGTATATATATTAAGGTATTTGGTCATAGTTTTGACAATTTTTCTTGCTTATGTTGGATTGCTAGCTACCCTATCCTTGCTTAGTTTTGACAAGCTTTCTGGCTTCAATTATCCCTGCTTTGTTTGGTATTGCTCTAAAGGGTGAAGAAGAGATGAGTTTTCCAGGCTTCAAAATGTATTCCAATGAGGAAATACAAAGGGATTTAATTTGTATACGTGCATTTTCTCTGACCTCTATAACTTAACCTACCTAGTTGCTGCGCCATAGTGTTCTCTTTCATACTTGTGATTCAATTGATTATTGTATACTGAAATCTCTGAGCTGTCTAACAGTCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTGGTAACTCTCACATTTAAATTTCACAGTTACATTATAAGCTGTGTCTTGTTGTGAATGAAGTTAGTATATAGTTCTTATACTGCTATTTCTACAAGTAGCCGTTCAGTAAATAGTTCTTGTACTGCTATTTCTACAGGTAGTCGTTTAGTAAATAG---TTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTC</genome_strand>
        <mrna_strand>ATGACTTTTCCAGGCTAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCATGATTTCAGAGAAAACAAGGATCAGTATGTGCACAAGGCTCCCTATCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTG........................................................................................................................................GTAGTCGTTTACTAAATAGTTCTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTATCAGTGCTGGTGATGTCGATTTTGTTGACCCTGCCCCATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAGGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>174</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="942" PGL_stop="3803"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="942" e_stop="1038"/>
            <exon e_start="1573" e_stop="1700"/>
            <exon e_start="1839" e_stop="1997"/>
            <exon e_start="2077" e_stop="2262"/>
            <exon e_start="2860" e_stop="3051"/>
            <exon e_start="3128" e_stop="3803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.938" e_score="0.969"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.868" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.649" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="942" e_stop="1038" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.938">
            <gDNA_intron_boundary i_start="1039" i_stop="1572" i_length="534"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1573" e_stop="1700" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="1701" i_stop="1838" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1839" e_stop="1997" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.914">
            <gDNA_intron_boundary i_start="1998" i_stop="2076" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2077" e_stop="2262" e_length="186"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.868">
            <gDNA_intron_boundary i_start="2263" i_stop="2859" i_length="597"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2860" e_stop="3051" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="0.902" acc_prob="0.649">
            <gDNA_intron_boundary i_start="3052" i_stop="3127" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="3128" e_stop="3803" e_length="676"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="942" stop="1038"/>
              <exon start="1573" stop="1700"/>
              <exon start="1839" stop="1997"/>
              <exon start="2077" stop="2262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1687" stop="1700"/>
              <exon start="1839" stop="1997"/>
              <exon start="2077" stop="2262"/>
              <exon start="2860" stop="3051"/>
              <exon start="3128" stop="3226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1687" stop="1700"/>
              <exon start="1839" stop="1997"/>
              <exon start="2077" stop="2262"/>
              <exon start="2860" stop="2925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1687" stop="1700"/>
              <exon start="1839" stop="1997"/>
              <exon start="2077" stop="2202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1867" stop="1997"/>
              <exon start="2077" stop="2104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2146" stop="2262"/>
              <exon start="2860" stop="3051"/>
              <exon start="3128" stop="3352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2928" stop="3051"/>
              <exon start="3128" stop="3501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3248" stop="3803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369151" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTAATGATTTAAATAATTCATCCCTACCTCTGGAGCATCATCTCCGTGCCTTAGAGGAGCTGTTGGTACTTGTTGAGCATATTGATAATGCAATTG : ATCTGCAGAAACTTGGAGGCTTCAGCATACTTGTAAGAATACTTAATCATTCTGAACCAGAAATAAGGATTGCTGCGGCATGGGTTCTTGGCAAAGCCAGTCAAAACAACCCCATTGTTCAGAAGCAG : GTCCTGGAACTTGGGGCATTGACAGTGCTAATGAAGATGATGAAATCTCACACCACGGAAGAAGCTGTAAAAGCATTATTTGCTATTTCAGCACTAATAAGAAATAACATGAATGGCCGAAGTTTGTTTTATCAGGAAGCTGGAGATACGATGCTTCAG : GAGGTTCTTAGCAATTCAAATCTGGATATCAGGTTGCATAAGAAGTCACTGTTTCTTATTGCTGATTTAGCCGAGAGTCAGCTGGAAAATGAGAACACAGCTGAGGTTTCCTTTTTTAGCAATCGATTGTTACTGAAGGCCATCGTTGATTCAATGGCATCAAGCGATCTTGATCTAACAGAAAAG : GCCCTTTACGCAACTAAAAACTTACTACTACTTAGATCGACTGATGTTCAACTCTTCAAGGACTTCTGTAAATTGAACGAGGTACTTGAGAGGACGAGGCAACAGTTGAATGATCTTAGTGAAGAATACGCAATGGATGTGGAGAGTCTTCGAAAAGAAGTTAACCTGACCTTCCTTCAAAAGCTGAATGAG : GTTACACAATCTGCATTATGATGACAGTCTCTGGCTTGATCTGGGTTTTGAACGTTATACTGCTTGCATTCTACGCGCGGAAGTAACCAAGTGGATCGCGATATCTTCATCATCCCACGCCTTTGTTCATCTGGACGTGGACTCGAAATTGGTACATCATCATCTGCTTAGGACAACACTAATGTGAAATAGACAACATTATGAGCTAACGACGACTCGCGCTGATTTTATAAGTGCCTCTACTATTTAAGTTATAGCCAATTTTGTCGAATATTTAACTTTTATCAATCTTGCAAAATTGATAGCAATGTAATGTATGTGATGAGAAAATCAATTTTGTGGAAAGACCAATATTTTCTGCTTCTACAGAATTTGTATCAACCTTTAAGAGAATATTCAATTTTCTACGAATTTATTATGTATCTATTTCACATAAAAAATAAAAAAAAAAAGGGAAATTGCGCGTATTAGTAGAAATATAATAGTCAATTTAGTGAACATAACTATAGTTTGTTATTATTATAATTTGCTGACCTATTTTTAGATACAATTATGCGGATTATTTTTTAGTTTTTGTATAATTAGCATGTTTGTAGAATTTAGAGTTTGTATAATATATTTTGTATAATTTTTATACAATGCAATTTTATATAATATGTACAACTGTTTACACTTT</gDNA_template>
            <first_frame> V  N  D  L  N  N  S  S  L  P  L  E  H  H  L  R  A  L  E  E  L  L  V  L  V  E  H  I  D  N  A  I   : D  L  Q  K  L  G  G  F  S  I  L  V  R  I  L  N  H  S  E  P  E  I  R  I  A  A  A  W  V  L  G  K  A  S  Q  N  N  P  I  V  Q  K  Q  :  V  L  E  L  G  A  L  T  V  L  M  K  M  M  K  S  H  T  T  E  E  A  V  K  A  L  F  A  I  S  A  L  I  R  N  N  M  N  G  R  S  L  F  Y  Q  E  A  G  D  T  M  L  Q  :  E  V  L  S  N  S  N  L  D  I  R  L  H  K  K  S  L  F  L  I  A  D  L  A  E  S  Q  L  E  N  E  N  T  A  E  V  S  F  F  S  N  R  L  L  L  K  A  I  V  D  S  M  A  S  S  D  L  D  L  T  E  K  :  A  L  Y  A  T  K  N  L  L  L  L  R  S  T  D  V  Q  L  F  K  D  F  C  K  L  N  E  V  L  E  R  T  R  Q  Q  L  N  D  L  S  E  E  Y  A  M  D  V  E  S  L  R  K  E  V  N  L  T  F  L  Q  K  L  N  E  :  V  T  Q  S  A  L  *  *  Q  S  L  A  *  S  G  F  *  T  L  Y  C  L  H  S  T  R  G  S  N  Q  V  D  R  D  I  F  I  I  P  R  L  C  S  S  G  R  G  L  E  I  G  T  S  S  S  A  *  D  N  T  N  V  K  *  T  T  L  *  A  N  D  D  S  R  *  F  Y  K  C  L  Y  Y  L  S  Y  S  Q  F  C  R  I  F  N  F  Y  Q  S  C  K  I  D  S  N  V  M  Y  V  M  R  K  S  I  L  W  K  D  Q  Y  F  L  L  L  Q  N  L  Y  Q  P  L  R  E  Y  S  I  F  Y  E  F  I  M  Y  L  F  H  I  K  N  K  K  K  K  G  N  C  A  Y  *  *  K  Y  N  S  Q  F  S  E  H  N  Y  S  L  L  L  L  *  F  A  D  L  F  L  D  T  I  M  R  I  I  F  *  F  L  Y  N  *  H  V  C  R  I  *  S  L  Y  N  I  F  C  I  I  F  I  Q  C  N  F  I  *  Y  V  Q  L  F  T  L  </first_frame>
            <second_frame>  L  M  I  *  I  I  H  P  Y  L  W  S  I  I  S  V  P  *  R  S  C  W  Y  L  L  S  I  L  I  M  Q  L  :  I  C  R  N  L  E  A  S  A  Y  L  *  E  Y  L  I  I  L  N  Q  K  *  G  L  L  R  H  G  F  L  A  K  P  V  K  T  T  P  L  F  R  S  R :   S  W  N  L  G  H  *  Q  C  *  *  R  *  *  N  L  T  P  R  K  K  L  *  K  H  Y  L  L  F  Q  H  *  *  E  I  T  *  M  A  E  V  C  F  I  R  K  L  E  I  R  C  F  R :   R  F  L  A  I  Q  I  W  I  S  G  C  I  R  S  H  C  F  L  L  L  I  *  P  R  V  S  W  K  M  R  T  Q  L  R  F  P  F  L  A  I  D  C  Y  *  R  P  S  L  I  Q  W  H  Q  A  I  L  I  *  Q  K  R :   P  F  T  Q  L  K  T  Y  Y  Y  L  D  R  L  M  F  N  S  S  R  T  S  V  N  *  T  R  Y  L  R  G  R  G  N  S  *  M  I  L  V  K  N  T  Q  W  M  W  R  V  F  E  K  K  L  T  *  P  S  F  K  S  *  M  R :   L  H  N  L  H  Y  D  D  S  L  W  L  D  L  G  F  E  R  Y  T  A  C  I  L  R  A  E  V  T  K  W  I  A  I  S  S  S  S  H  A  F  V  H  L  D  V  D  S  K  L  V  H  H  H  L  L  R  T  T  L  M  *  N  R  Q  H  Y  E  L  T  T  T  R  A  D  F  I  S  A  S  T  I  *  V  I  A  N  F  V  E  Y  L  T  F  I  N  L  A  K  L  I  A  M  *  C  M  *  *  E  N  Q  F  C  G  K  T  N  I  F  C  F  Y  R  I  C  I  N  L  *  E  N  I  Q  F  S  T  N  L  L  C  I  Y  F  T  *  K  I  K  K  K  R  E  I  A  R  I  S  R  N  I  I  V  N  L  V  N  I  T  I  V  C  Y  Y  Y  N  L  L  T  Y  F  *  I  Q  L  C  G  L  F  F  S  F  C  I  I  S  M  F  V  E  F  R  V  C  I  I  Y  F  V  *  F  L  Y  N  A  I  L  Y  N  M  Y  N  C  L  H  F </second_frame>
            <third_frame>   *  *  F  K  *  F  I  P  T  S  G  A  S  S  P  C  L  R  G  A  V  G  T  C  *  A  Y  *  *  C  N  * :   S  A  E  T  W  R  L  Q  H  T  C  K  N  T  *  S  F  *  T  R  N  K  D  C  C  G  M  G  S  W  Q  S  Q  S  K  Q  P  H  C  S  E  A   : G  P  G  T  W  G  I  D  S  A  N  E  D  D  E  I  S  H  H  G  R  S  C  K  S  I  I  C  Y  F  S  T  N  K  K  *  H  E  W  P  K  F  V  L  S  G  S  W  R  Y  D  A  S   : G  G  S  *  Q  F  K  S  G  Y  Q  V  A  *  E  V  T  V  S  Y  C  *  F  S  R  E  S  A  G  K  *  E  H  S  *  G  F  L  F  *  Q  S  I  V  T  E  G  H  R  *  F  N  G  I  K  R  S  *  S  N  R  K   : G  P  L  R  N  *  K  L  T  T  T  *  I  D  *  C  S  T  L  Q  G  L  L  *  I  E  R  G  T  *  E  D  E  A  T  V  E  *  S  *  *  R  I  R  N  G  C  G  E  S  S  K  R  S  *  P  D  L  P  S  K  A  E  *   : G  Y  T  I  C  I  M  M  T  V  S  G  L  I  W  V  L  N  V  I  L  L  A  F  Y  A  R  K  *  P  S  G  S  R  Y  L  H  H  P  T  P  L  F  I  W  T  W  T  R  N  W  Y  I  I  I  C  L  G  Q  H  *  C  E  I  D  N  I  M  S  *  R  R  L  A  L  I  L  *  V  P  L  L  F  K  L  *  P  I  L  S  N  I  *  L  L  S  I  L  Q  N  *  *  Q  C  N  V  C  D  E  K  I  N  F  V  E  R  P  I  F  S  A  S  T  E  F  V  S  T  F  K  R  I  F  N  F  L  R  I  Y  Y  V  S  I  S  H  K  K  *  K  K  K  G  K  L  R  V  L  V  E  I  *  *  S  I  *  *  T  *  L  *  F  V  I  I  I  I  C  *  P  I  F  R  Y  N  Y  A  D  Y  F  L  V  F  V  *  L  A  C  L  *  N  L  E  F  V  *  Y  I  L  Y  N  F  Y  T  M  Q  F  Y  I  I  C  T  T  V  Y  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="942" stop="1038"/>
                    <exon start="1573" stop="1700"/>
                    <exon start="1839" stop="1997"/>
                    <exon start="2077" stop="2262"/>
                    <exon start="2860" stop="3051"/>
                    <exon start="3128" stop="3148"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNDLNNSSLPLEHHLRALEELLVLVEHIDNAIDLQKLGGFSILVRILNHSEPEIRIAAAWVLGKASQNNPIVQKQVLELGALTVLMKMMKSHTTEEAVKALFAISALIRNNMNGRSLFYQEAGDTMLQEVLSNSNLDIRLHKKSLFLIADLAESQLENENTAEVSFFSNRLLLKAIVDSMASSDLDLTEKALYATKNLLLLRSTDVQLFKDFCKLNEVLERTRQQLNDLSEEYAMDVESLRKEVNLTFLQKLNEVTQSAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3353" stop="3598"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYKCLYYLSYSQFCRIFNFYQSCKIDSNVMYVMRKSILWKDQYFLLLQNLYQPLREYSIFYEFIMYLFHIKNKKKKGNCAY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4314" PGL_stop="7132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4314" e_stop="4472"/>
            <exon e_start="4711" e_stop="5002"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="0.950"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="4314" e_stop="4472" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="4473" i_stop="4710" i_length="238"/>
          </intron>
          <exon e_serial="2" e_score="0.925">
            <gDNA_exon_boundary e_start="4711" e_stop="5002" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4314" stop="4472"/>
              <exon start="4711" stop="5002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472474" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCAAAAACACCAACAAAAAATGGCTTCCAAATCTCTAAAACCTCCAAAACAACCACCAAAAAACCCTAAAAAACAATGGTCCCTGAACGATTTCGAGATCGGAAAACCCCTCGGAAAAGGCAAATTCGGCCGTGTATACCTCGCCCGCGAAGTTAAG : AGTGGATTTATAGTGGCGTTGAAGGTGATATTCAAGGAGCAGATAGAGAAATACAGGTTGCATCATCAGCTTAAGAGGGAAATGGAGATTCAAACAAGTCTTCATCATCCCAATGTGTTGAGGCTATATGGTTGGTTTCATGATGAGGAGCGGATTTACTTGATTTTGGAGTATGCTCATCGCGGTGAGCTGTATAGGGAGCTAAGGAAGATAGGTCGTCTGTCTGAGAAACAAGCTGCCATAGTATGTTACATCCTATTGCTTGCTCTCCTCATATAAGATATGAAACAAA</gDNA_template>
            <first_frame> L  Q  K  H  Q  Q  K  M  A  S  K  S  L  K  P  P  K  Q  P  P  K  N  P  K  K  Q  W  S  L  N  D  F  E  I  G  K  P  L  G  K  G  K  F  G  R  V  Y  L  A  R  E  V  K  :  S  G  F  I  V  A  L  K  V  I  F  K  E  Q  I  E  K  Y  R  L  H  H  Q  L  K  R  E  M  E  I  Q  T  S  L  H  H  P  N  V  L  R  L  Y  G  W  F  H  D  E  E  R  I  Y  L  I  L  E  Y  A  H  R  G  E  L  Y  R  E  L  R  K  I  G  R  L  S  E  K  Q  A  A  I  V  C  Y  I  L  L  L  A  L  L  I  *  D  M  K  Q  </first_frame>
            <second_frame>  F  K  N  T  N  K  K  W  L  P  N  L  *  N  L  Q  N  N  H  Q  K  T  L  K  N  N  G  P  *  T  I  S  R  S  E  N  P  S  E  K  A  N  S  A  V  Y  T  S  P  A  K  L  R :   V  D  L  *  W  R  *  R  *  Y  S  R  S  R  *  R  N  T  G  C  I  I  S  L  R  G  K  W  R  F  K  Q  V  F  I  I  P  M  C  *  G  Y  M  V  G  F  M  M  R  S  G  F  T  *  F  W  S  M  L  I  A  V  S  C  I  G  S  *  G  R  *  V  V  C  L  R  N  K  L  P  *  Y  V  T  S  Y  C  L  L  S  S  Y  K  I  *  N  K </second_frame>
            <third_frame>   S  K  T  P  T  K  N  G  F  Q  I  S  K  T  S  K  T  T  T  K  K  P  *  K  T  M  V  P  E  R  F  R  D  R  K  T  P  R  K  R  Q  I  R  P  C  I  P  R  P  R  S  *   : E  W  I  Y  S  G  V  E  G  D  I  Q  G  A  D  R  E  I  Q  V  A  S  S  A  *  E  G  N  G  D  S  N  K  S  S  S  S  Q  C  V  E  A  I  W  L  V  S  *  *  G  A  D  L  L  D  F  G  V  C  S  S  R  *  A  V  *  G  A  K  E  D  R  S  S  V  *  E  T  S  C  H  S  M  L  H  P  I  A  C  S  P  H  I  R  Y  E  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4314" stop="4472"/>
                    <exon start="4711" stop="4989"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQKHQQKMASKSLKPPKQPPKNPKKQWSLNDFEIGKPLGKGKFGRVYLAREVKSGFIVALKVIFKEQIEKYRLHHQLKREMEIQTSLHHPNVLRLYGWFHDEERIYLILEYAHRGELYRELRKIGRLSEKQAAIVCYILLLALLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4732" e_stop="4953"/>
            <exon e_start="5591" e_stop="5686"/>
            <exon e_start="6791" e_stop="7005"/>
            <exon e_start="7081" e_stop="7132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4732" e_stop="4953" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4954" i_stop="5590" i_length="637"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5591" e_stop="5686" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="5687" i_stop="6790" i_length="1104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6791" e_stop="7005" e_length="215"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="7006" i_stop="7080" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="7081" e_stop="7132" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4732" stop="4953"/>
              <exon start="5591" stop="5686"/>
              <exon start="6791" stop="7005"/>
              <exon start="7081" stop="7132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346299" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGTGATATTCAAGGAGCAGATAGAGAAATACAGGTTGCATCATCAGCTTAAGAGGGAAATGGAGATTCAAACAAGTCTTCATCATCCCAATGTGTTGAGGCTATATGGTTGGTTTCATGATGAGGAGCGGATTTACTTGATTTTGGAGTATGCTCATCGCGGTGAGCTGTATAGGGAGCTAAGGAAGATAGGTCGTCTGTCTGAGAAACAAGCTGCCATA : TATATTGCAAGTCTCACTCAAGCACTGGCGTACTGTCATGAGAAGCATGTTATTCACAGGGACATAAAGCCGGAAAACCTGTTACTTGATCATGAG : GGCCGCTTAAAGATTGCAGACTTTGGGTGGTCTGTACAATCTAGAAGCAAGAGACATACAATGTGCGGAACTCTGGACTATCTGGCACCAGAAATGGTGGAGAACAAAGCTCATGATTATTCAGTTGACAATTGGACCCTGGGGATCCTTTGCTATGAATTTCTATATGGTGTGCCTCCATTTGAGGCCGAGAGACAGACTGACACATTCAGAAG : AATTATGAAGGTAGACCTCAGCTTCCCTTCAACACTTGATGTATCTGCTGAA</gDNA_template>
            <first_frame> K  V  I  F  K  E  Q  I  E  K  Y  R  L  H  H  Q  L  K  R  E  M  E  I  Q  T  S  L  H  H  P  N  V  L  R  L  Y  G  W  F  H  D  E  E  R  I  Y  L  I  L  E  Y  A  H  R  G  E  L  Y  R  E  L  R  K  I  G  R  L  S  E  K  Q  A  A  I  :  Y  I  A  S  L  T  Q  A  L  A  Y  C  H  E  K  H  V  I  H  R  D  I  K  P  E  N  L  L  L  D  H  E  :  G  R  L  K  I  A  D  F  G  W  S  V  Q  S  R  S  K  R  H  T  M  C  G  T  L  D  Y  L  A  P  E  M  V  E  N  K  A  H  D  Y  S  V  D  N  W  T  L  G  I  L  C  Y  E  F  L  Y  G  V  P  P  F  E  A  E  R  Q  T  D  T  F  R  R :   I  M  K  V  D  L  S  F  P  S  T  L  D  V  S  A  E </first_frame>
            <second_frame>  R  *  Y  S  R  S  R  *  R  N  T  G  C  I  I  S  L  R  G  K  W  R  F  K  Q  V  F  I  I  P  M  C  *  G  Y  M  V  G  F  M  M  R  S  G  F  T  *  F  W  S  M  L  I  A  V  S  C  I  G  S  *  G  R  *  V  V  C  L  R  N  K  L  P  Y :   I  L  Q  V  S  L  K  H  W  R  T  V  M  R  S  M  L  F  T  G  T  *  S  R  K  T  C  Y  L  I  M  R :   A  A  *  R  L  Q  T  L  G  G  L  Y  N  L  E  A  R  D  I  Q  C  A  E  L  W  T  I  W  H  Q  K  W  W  R  T  K  L  M  I  I  Q  L  T  I  G  P  W  G  S  F  A  M  N  F  Y  M  V  C  L  H  L  R  P  R  D  R  L  T  H  S  E   : E  L  *  R  *  T  S  A  S  L  Q  H  L  M  Y  L  L   </second_frame>
            <third_frame>   G  D  I  Q  G  A  D  R  E  I  Q  V  A  S  S  A  *  E  G  N  G  D  S  N  K  S  S  S  S  Q  C  V  E  A  I  W  L  V  S  *  *  G  A  D  L  L  D  F  G  V  C  S  S  R  *  A  V  *  G  A  K  E  D  R  S  S  V  *  E  T  S  C  H   : I  Y  C  K  S  H  S  S  T  G  V  L  S  *  E  A  C  Y  S  Q  G  H  K  A  G  K  P  V  T  *  S  *   : G  P  L  K  D  C  R  L  W  V  V  C  T  I  *  K  Q  E  T  Y  N  V  R  N  S  G  L  S  G  T  R  N  G  G  E  Q  S  S  *  L  F  S  *  Q  L  D  P  G  D  P  L  L  *  I  S  I  W  C  A  S  I  *  G  R  E  T  D  *  H  I  Q  K  :  N  Y  E  G  R  P  Q  L  P  F  N  T  *  C  I  C  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4732" stop="4953"/>
                    <exon start="5591" stop="5686"/>
                    <exon start="6791" stop="7005"/>
                    <exon start="7081" stop="7132"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVIFKEQIEKYRLHHQLKREMEIQTSLHHPNVLRLYGWFHDEERIYLILEYAHRGELYRELRKIGRLSEKQAAIYIASLTQALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYSVDNWTLGILCYEFLYGVPPFEAERQTDTFRRIMKVDLSFPSTLDVSAE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15470" PGL_stop="8854"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15470" e_stop="15375"/>
            <exon e_start="15306" e_stop="15104"/>
            <exon e_start="14916" e_stop="14750"/>
            <exon e_start="14667" e_stop="14493"/>
            <exon e_start="12332" e_stop="12271"/>
            <exon e_start="10561" e_stop="10480"/>
            <exon e_start="10232" e_stop="10175"/>
            <exon e_start="9971" e_stop="9871"/>
            <exon e_start="8920" e_stop="8854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.962" e_score="0.985"/>
          <exon-intron don_prob="0.345" acc_prob="0.730" e_score="0.994"/>
          <exon-intron don_prob="0.544" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.965" e_score="0.952"/>
          <exon-intron don_prob="0.901" acc_prob="0.301" e_score="0.988"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.983"/>
          <exon-intron don_prob="0.963" acc_prob="0.988" e_score="0.990"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15470" e_stop="15375" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15374" i_stop="15307" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="15306" e_stop="15104" e_length="203"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.962">
            <gDNA_intron_boundary i_start="15103" i_stop="14917" i_length="187"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="14916" e_stop="14750" e_length="167"/>
          </exon>
          <intron i_serial="3" don_prob="0.345" acc_prob="0.730">
            <gDNA_intron_boundary i_start="14749" i_stop="14668" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14667" e_stop="14493" e_length="175"/>
          </exon>
          <intron i_serial="4" don_prob="0.544" acc_prob="0.980">
            <gDNA_intron_boundary i_start="14492" i_stop="12333" i_length="2160"/>
          </intron>
          <exon e_serial="5" e_score="0.952">
            <gDNA_exon_boundary e_start="12332" e_stop="12271" e_length="62"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.965">
            <gDNA_intron_boundary i_start="12270" i_stop="10562" i_length="1709"/>
          </intron>
          <exon e_serial="6" e_score="0.988">
            <gDNA_exon_boundary e_start="10561" e_stop="10480" e_length="82"/>
          </exon>
          <intron i_serial="6" don_prob="0.901" acc_prob="0.301">
            <gDNA_intron_boundary i_start="10479" i_stop="10233" i_length="247"/>
          </intron>
          <exon e_serial="7" e_score="0.983">
            <gDNA_exon_boundary e_start="10232" e_stop="10175" e_length="58"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="10174" i_stop="9972" i_length="203"/>
          </intron>
          <exon e_serial="8" e_score="0.990">
            <gDNA_exon_boundary e_start="9971" e_stop="9871" e_length="101"/>
          </exon>
          <intron i_serial="8" don_prob="0.963" acc_prob="0.988">
            <gDNA_intron_boundary i_start="9870" i_stop="8921" i_length="950"/>
          </intron>
          <exon e_serial="9" e_score="0.970">
            <gDNA_exon_boundary e_start="8920" e_stop="8854" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15470" stop="15375"/>
              <exon start="15306" stop="15104"/>
              <exon start="14916" stop="14750"/>
              <exon start="14667" stop="14560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14804" stop="14750"/>
              <exon start="14667" stop="14493"/>
              <exon start="12332" stop="12271"/>
              <exon start="10561" stop="10480"/>
              <exon start="10232" stop="10175"/>
              <exon start="9971" stop="9871"/>
              <exon start="8920" stop="8854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14790" stop="14750"/>
              <exon start="14667" stop="14493"/>
              <exon start="12332" stop="12299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475308" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTCCCCCATGCATGACTGAAGTTTTCCGCTGCATGGGAAGGGCAGCTCGTGCTGCTTTATGTGCAATTGCAAGGCATCTTCGATTGCGAAGCGA : TGCTCTGTAGTGTCTTCAATAACTTGCTTGATGACAATCCGCTGCCCGTTAATGAGGCCTCTTCATCTGTTGTTGTTGCAACCTTCTCCAATACCACCTCTCAAAATGGGAAAGGAGCTATTGGAGGAGGGAAGCTAGTTACAAATGGTGAAGTAGAGAAAGGGCTGTTGACACTAGTTTCATCTGATGCTCCTGGTCTTCAG : GTTTGTGATCCCAATGGTCATTGGTATCTAGCAGATAGTGGCTTGACTCCTGGGGATTTACTATTGCTTACTGGGAAAGCTCTCAGCCATGCTACTGCCGGTCTTCGTCCTGCAGCCGTATACCGGGGTTCAGCTGATAATTATGTGGGCACTACTTGTGGTGGAAG : GACATCACTTGCATTTAGGCTTATACCTCAGAGCAATGCAATACTGGATTGTTCTCCGATTACAGCTGCTGGTCATGTTATTCCTCATAGCTACGTGCCAATATCTGTAAGCCAGTTTATGGATGACCTTTCAGCCGAGGAAGACATGCTTTGTAGCAATACTGATAATGCTTAT : GTGGCCCGAGACAATGTAAATAAGGAACCATCACTCAGAAGTGTTCTTTCAGATCCCTTATC : TGGCGCATTCCTTGAAGATGCTATGTTTGTTTCATGTGGACATTCCTTTGGTGGTCTCATGCTGAAAAGGGTTATTGATATG : GCAAGATGTATCCTCTGCAATGCTGAAATTGAGCGTGGTTCCTTAATTCCTAACCACG : TACTGAGAACTGCGGCTGCAGCAGTGAAGCATGAGGATGACCGAAGACTTTTCCACAATGCAGCTCTTAGAAAGCGTCGAAAAGAAGTGGGAGACATTAGG : GAGAATGGTGAGCTTCCTTCTGAAAATGGACCGCATAAAGGTGTTCAGTATCCATTCTCAGTGAATG</gDNA_template>
            <first_frame> F  S  P  M  H  D  *  S  F  P  L  H  G  K  G  S  S  C  C  F  M  C  N  C  K  A  S  S  I  A  K  R  :  C  S  V  V  S  S  I  T  C  L  M  T  I  R  C  P  L  M  R  P  L  H  L  L  L  L  Q  P  S  P  I  P  P  L  K  M  G  K  E  L  L  E  E  G  S  *  L  Q  M  V  K  *  R  K  G  C  *  H  *  F  H  L  M  L  L  V  F  R :   F  V  I  P  M  V  I  G  I  *  Q  I  V  A  *  L  L  G  I  Y  Y  C  L  L  G  K  L  S  A  M  L  L  P  V  F  V  L  Q  P  Y  T  G  V  Q  L  I  I  M  W  A  L  L  V  V  E   : G  H  H  L  H  L  G  L  Y  L  R  A  M  Q  Y  W  I  V  L  R  L  Q  L  L  V  M  L  F  L  I  A  T  C  Q  Y  L  *  A  S  L  W  M  T  F  Q  P  R  K  T  C  F  V  A  I  L  I  M  L  M :   W  P  E  T  M  *  I  R  N  H  H  S  E  V  F  F  Q  I  P  Y   : L  A  H  S  L  K  M  L  C  L  F  H  V  D  I  P  L  V  V  S  C  *  K  G  L  L  I  W :   Q  D  V  S  S  A  M  L  K  L  S  V  V  P  *  F  L  T  T  :  Y  *  E  L  R  L  Q  Q  *  S  M  R  M  T  E  D  F  S  T  M  Q  L  L  E  S  V  E  K  K  W  E  T  L  G :   R  M  V  S  F  L  L  K  M  D  R  I  K  V  F  S  I  H  S  Q  *  M </first_frame>
            <second_frame>  S  P  P  C  M  T  E  V  F  R  C  M  G  R  A  A  R  A  A  L  C  A  I  A  R  H  L  R  L  R  S  D :   A  L  *  C  L  Q  *  L  A  *  *  Q  S  A  A  R  *  *  G  L  F  I  C  C  C  C  N  L  L  Q  Y  H  L  S  K  W  E  R  S  Y  W  R  R  E  A  S  Y  K  W  *  S  R  E  R  A  V  D  T  S  F  I  *  C  S  W  S  S   : G  L  *  S  Q  W  S  L  V  S  S  R  *  W  L  D  S  W  G  F  T  I  A  Y  W  E  S  S  Q  P  C  Y  C  R  S  S  S  C  S  R  I  P  G  F  S  *  *  L  C  G  H  Y  L  W  W  K  :  D  I  T  C  I  *  A  Y  T  S  E  Q  C  N  T  G  L  F  S  D  Y  S  C  W  S  C  Y  S  S  *  L  R  A  N  I  C  K  P  V  Y  G  *  P  F  S  R  G  R  H  A  L  *  Q  Y  *  *  C  L   : C  G  P  R  Q  C  K  *  G  T  I  T  Q  K  C  S  F  R  S  L  I  :  W  R  I  P  *  R  C  Y  V  C  F  M  W  T  F  L  W  W  S  H  A  E  K  G  Y  *  Y   : G  K  M  Y  P  L  Q  C  *  N  *  A  W  F  L  N  S  *  P  R :   T  E  N  C  G  C  S  S  E  A  *  G  *  P  K  T  F  P  Q  C  S  S  *  K  A  S  K  R  S  G  R  H  *   : G  E  W  *  A  S  F  *  K  W  T  A  *  R  C  S  V  S  I  L  S  E   </second_frame>
            <third_frame>   L  P  H  A  *  L  K  F  S  A  A  W  E  G  Q  L  V  L  L  Y  V  Q  L  Q  G  I  F  D  C  E  A   : M  L  C  S  V  F  N  N  L  L  D  D  N  P  L  P  V  N  E  A  S  S  S  V  V  V  A  T  F  S  N  T  T  S  Q  N  G  K  G  A  I  G  G  G  K  L  V  T  N  G  E  V  E  K  G  L  L  T  L  V  S  S  D  A  P  G  L  Q  :  V  C  D  P  N  G  H  W  Y  L  A  D  S  G  L  T  P  G  D  L  L  L  L  T  G  K  A  L  S  H  A  T  A  G  L  R  P  A  A  V  Y  R  G  S  A  D  N  Y  V  G  T  T  C  G  G  R :   T  S  L  A  F  R  L  I  P  Q  S  N  A  I  L  D  C  S  P  I  T  A  A  G  H  V  I  P  H  S  Y  V  P  I  S  V  S  Q  F  M  D  D  L  S  A  E  E  D  M  L  C  S  N  T  D  N  A  Y  :  V  A  R  D  N  V  N  K  E  P  S  L  R  S  V  L  S  D  P  L  S :   G  A  F  L  E  D  A  M  F  V  S  C  G  H  S  F  G  G  L  M  L  K  R  V  I  D  M  :  A  R  C  I  L  C  N  A  E  I  E  R  G  S  L  I  P  N  H   : V  L  R  T  A  A  A  A  V  K  H  E  D  D  R  R  L  F  H  N  A  A  L  R  K  R  R  K  E  V  G  D  I  R  :  E  N  G  E  L  P  S  E  N  G  P  H  K  G  V  Q  Y  P  F  S  V  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15453" stop="15375"/>
                    <exon start="15306" stop="15104"/>
                    <exon start="14916" stop="14750"/>
                    <exon start="14667" stop="14493"/>
                    <exon start="12332" stop="12271"/>
                    <exon start="10561" stop="10480"/>
                    <exon start="10232" stop="10175"/>
                    <exon start="9971" stop="9871"/>
                    <exon start="8920" stop="8855"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKFSAAWEGQLVLLYVQLQGIFDCEAMLCSVFNNLLDDNPLPVNEASSSVVVATFSNTTSQNGKGAIGGGKLVTNGEVEKGLLTLVSSDAPGLQVCDPNGHWYLADSGLTPGDLLLLTGKALSHATAGLRPAAVYRGSADNYVGTTCGGRTSLAFRLIPQSNAILDCSPITAAGHVIPHSYVPISVSQFMDDLSAEEDMLCSNTDNAYVARDNVNKEPSLRSVLSDPLSGAFLEDAMFVSCGHSFGGLMLKRVIDMARCILCNAEIERGSLIPNHVLRTAAAAVKHEDDRRLFHNAALRKRRKEVGDIRENGELPSENGPHKGVQYPFSVN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="24669" PGL_stop="17670"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24669" e_stop="24620"/>
            <exon e_start="24490" e_stop="24246"/>
            <exon e_start="22150" e_stop="22067"/>
            <exon e_start="21968" e_stop="21814"/>
            <exon e_start="21690" e_stop="21593"/>
            <exon e_start="20828" e_stop="20720"/>
            <exon e_start="19657" e_stop="19500"/>
            <exon e_start="19261" e_stop="19119"/>
            <exon e_start="18988" e_stop="18848"/>
            <exon e_start="18236" e_stop="17849"/>
            <exon e_start="17679" e_stop="17670"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.847" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.839" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.820" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24669" e_stop="24620" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.847">
            <gDNA_intron_boundary i_start="24619" i_stop="24491" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24490" e_stop="24246" e_length="245"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22150" e_stop="22067" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21968" e_stop="21814" e_length="155"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21690" e_stop="21593" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.839">
            <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20828" e_stop="20720" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.959">
            <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19657" e_stop="19500" e_length="158"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.953">
            <gDNA_intron_boundary i_start="19499" i_stop="19262" i_length="238"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19261" e_stop="19119" e_length="143"/>
          </exon>
          <intron i_serial="8" don_prob="0.862" acc_prob="0.990">
            <gDNA_intron_boundary i_start="19118" i_stop="18989" i_length="130"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="18988" e_stop="18848" e_length="141"/>
          </exon>
          <intron i_serial="9" don_prob="0.952" acc_prob="0.986">
            <gDNA_intron_boundary i_start="18847" i_stop="18237" i_length="611"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="18236" e_stop="17849" e_length="388"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.820">
            <gDNA_intron_boundary i_start="17848" i_stop="17680" i_length="169"/>
          </intron>
          <exon e_serial="11" e_score="0.800">
            <gDNA_exon_boundary e_start="17679" e_stop="17670" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24669" stop="24620"/>
              <exon start="24490" stop="24252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24665" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24653" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24653" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24653" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24653" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24653" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24649" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24649" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24649" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24649" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24649" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24631" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24622" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24392" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24297" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24294" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21884" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21688" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19500"/>
              <exon start="19261" stop="19119"/>
              <exon start="18988" stop="18936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21668" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19500"/>
              <exon start="19261" stop="19119"/>
              <exon start="18988" stop="18848"/>
              <exon start="18236" stop="18187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19521" stop="19500"/>
              <exon start="19261" stop="19119"/>
              <exon start="18988" stop="18848"/>
              <exon start="18236" stop="17849"/>
              <exon start="17679" stop="17670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19520" stop="19500"/>
              <exon start="19261" stop="19119"/>
              <exon start="18988" stop="18848"/>
              <exon start="18236" stop="17849"/>
              <exon start="17679" stop="17670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCTCCTATTGCCTGCAAAACTTGTTCCTCTCCCGCCGGCTATCCAGTT : GATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAG : GTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG : GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG : ATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG : TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG : TATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTTTCTGGAATGGAGTCTAAGATGAAGTGGGTGAAGAAGCATGAAAATCTGATTGTTCTTCGCACGTTCAGCAAAAGAGCTG : GTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGAATTCCTTTGGCGAGCAAAGCAACCATATAATGTGTCTGTTGCTGCTGAAGTTGCTGCTTGTGCTGCTTTAAAGAACCCCACGTATCTGGAG : AATGTGAAAGTGGCACTGGTGCAAGAAAGGGAGAGACTATTTAATCTCTTGAAAGAAGTCCCGTTTCTTGATCCATACCCTAGCTATTCTAATTTCATTCTCTGTAAAGTAACGTCTGGAATGGATGCTAAGAAATTGAAG : GAAGACCTTGCGACTATGGGAGTGATGATCCGTCACTACAACAGCAAGGAGTTGAAGGGATATGTCCGTGTCTCTGTAGGCAAGCCCGAGCACACCGAGGCATTGATGAAATGCCTCAAGCACTTCTATTGATCTTGCTTTGGGTCGGTACGACAAAATCTGAAGTGTCTTGTGTTCTCATGCTATCATTCTTCAGAAATAAGTCTTTGTATGGAAATGAGGAGTCACAGAGTGTTCTTCAAGTGTACATTATGTTGAAAAAATGGCCATACAATGGCATTTGTAGTTTTATACCTTTAGACTTGGTCTTTTTGACCCTTGATTGCAAAAAATTCATATTGTAATTCATAAAAGGGTTGGACTCATTTGAAGAAATAATTTAGTTTTT : CAAGAAAAAG</gDNA_template>
            <first_frame> T  L  L  L  P  A  K  L  V  P  L  P  P  A  I  Q  L :   I  *  Q  V  L  I  D  G  C  D  *  I  M  Q  H  F  I  Y  *  H  C  *  S  K  T  Q  F  F  K  R  R  E  S  E  E  E  N  C  L  Y  G  L  F  S  V  S  A  R  R  G  E  P  S  A  E  T  R  C  K  W  G  F  F  Y  S  D  P  S  S  *  I  V  P  L  P  T  H  F  A  I  *   : G  L  V  H  S  S  W  *  K  A  *  G  H  C  E  I  R  R  *  R  K  P  L  W  T  S  S  R   : G  K  R  S  F  G  V  Y  E  I  S  I  H  L  S  *  S  *  K  P  H  A  A  C  S  S  C  *  R  F  W  P  *  I  *  V  Y  S  C  R  V  R  C  R  *  T  H  *  F  D  N  E  :  M  H  I  G  S  W  *  Q  D  C  *  L  P  T  H  F  H  N  V  *  I  *  C  S  C  K  W  S  R  C  H  Q  G :   A  *  E  P  R  L  *  P  G  R  *  T  D  Y  R  S  G  *  T  *  E  T  K  V  H  I  S  D  I  T  *  *  S  *  W  E  :  Y  N  *  *  *  N  S  F  G  N  T  S  P  A  H  I  G  N  I  G  *  S  I  C  *  V  F  W  N  G  V  *  D  E  V  G  E  E  A  *  K  S  D  C  S  S  H  V  Q  Q  K  S  W :   F  S  W  T  K  S  R  I  W  S  F  S  T  E  Y  Y  *  I  P  L  A  S  K  A  T  I  *  C  V  C  C  C  *  S  C  C  L  C  C  F  K  E  P  H  V  S  G   : E  C  E  S  G  T  G  A  R  K  G  E  T  I  *  S  L  E  R  S  P  V  S  *  S  I  P  *  L  F  *  F  H  S  L  *  S  N  V  W  N  G  C  *  E  I  E   : G  R  P  C  D  Y  G  S  D  D  P  S  L  Q  Q  Q  G  V  E  G  I  C  P  C  L  C  R  Q  A  R  A  H  R  G  I  D  E  M  P  Q  A  L  L  L  I  L  L  W  V  G  T  T  K  S  E  V  S  C  V  L  M  L  S  F  F  R  N  K  S  L  Y  G  N  E  E  S  Q  S  V  L  Q  V  Y  I  M  L  K  K  W  P  Y  N  G  I  C  S  F  I  P  L  D  L  V  F  L  T  L  D  C  K  K  F  I  L  *  F  I  K  G  L  D  S  F  E  E  I  I  *  F  F :   K  K  K </first_frame>
            <second_frame>  L  S  Y  C  L  Q  N  L  F  L  S  R  R  L  S  S   : *  Y  S  K  F  *  L  M  G  V  I  E  L  C  N  I  S  S  I  S  I  V  R  A  K  P  S  S  L  N  E  G  N  R  R  R  R  I  A  C  M  A  S  S  V  S  V  Q  E  E  E  S  H  Q  Q  K  Q  G  V  N  G  G  S  F  I  R  T  H  L  L  K  L  S  P  Y  Q  P  I  L  P  F  E  :  V  L  S  T  R  L  G  R  K  P  E  D  I  V  K  L  D  A  N  E  N  P  Y  G  P  P  P  E  :  V  N  E  A  L  G  S  M  K  F  P  Y  I  Y  P  D  P  E  S  R  T  L  R  A  A  L  A  E  D  S  G  L  E  S  E  Y  I  L  A  G  C  G  A  D  E  L  I  D  L  I  M  R :   C  I  L  D  P  G  D  K  I  V  D  C  P  P  T  F  T  M  Y  E  F  D  A  A  V  N  G  A  G  V  I  K   : V  P  R  N  P  D  F  S  L  D  V  E  R  I  T  E  V  V  E  R  E  K  P  K  C  I  F  L  T  S  P  N  N  P  D  G  S :   I  I  D  D  E  T  L  L  E  I  L  H  L  P  I  L  V  I  L  D  E  A  Y  V  E  F  S  G  M  E  S  K  M  K  W  V  K  K  H  E  N  L  I  V  L  R  T  F  S  K  R  A   : G  L  A  G  L  R  V  G  Y  G  A  F  P  R  S  I  I  E  F  L  W  R  A  K  Q  P  Y  N  V  S  V  A  A  E  V  A  A  C  A  A  L  K  N  P  T  Y  L  E  :  N  V  K  V  A  L  V  Q  E  R  E  R  L  F  N  L  L  K  E  V  P  F  L  D  P  Y  P  S  Y  S  N  F  I  L  C  K  V  T  S  G  M  D  A  K  K  L  K  :  E  D  L  A  T  M  G  V  M  I  R  H  Y  N  S  K  E  L  K  G  Y  V  R  V  S  V  G  K  P  E  H  T  E  A  L  M  K  C  L  K  H  F  Y  *  S  C  F  G  S  V  R  Q  N  L  K  C  L  V  F  S  C  Y  H  S  S  E  I  S  L  C  M  E  M  R  S  H  R  V  F  F  K  C  T  L  C  *  K  N  G  H  T  M  A  F  V  V  L  Y  L  *  T  W  S  F  *  P  L  I  A  K  N  S  Y  C  N  S  *  K  G  W  T  H  L  K  K  *  F  S  F   : S  R  K   </second_frame>
            <third_frame>   S  P  I  A  C  K  T  C  S  S  P  A  G  Y  P  V  :  D  I  A  S  F  D  *  W  V  *  L  N  Y  A  T  F  H  L  L  A  L  L  E  Q  N  P  V  L  *  T  K  G  I  G  G  G  E  L  L  V  W  P  L  Q  C  Q  C  K  K  R  R  A  I  S  R  N  K  V  *  M  G  V  L  L  F  G  P  I  F  L  N  C  P  L  T  N  P  F  C  H  L  R :   S  C  P  L  V  L  V  E  S  L  R  T  L  *  N  *  T  L  T  K  T  P  M  D  L  L  Q  R :   *  T  K  L  W  G  L  *  N  F  H  T  F  I  L  I  L  K  A  A  R  C  V  Q  L  L  L  K  I  L  A  L  N  L  S  I  F  L  Q  G  A  V  Q  M  N  S  L  I  *  *  *   : D  A  Y  W  I  L  V  T  R  L  L  T  A  H  P  L  S  Q  C  M  N  L  M  Q  L  *  M  E  Q  V  S  S  R  :  C  L  G  T  Q  T  L  A  W  T  L  N  G  L  P  K  W  L  N  V  R  N  Q  S  A  Y  F  *  H  H  L  I  I  L  M  G   : V  *  L  M  M  K  L  F  W  K  Y  F  T  C  P  Y  W  *  Y  W  M  K  H  M  L  S  F  L  E  W  S  L  R  *  S  G  *  R  S  M  K  I  *  L  F  F  A  R  S  A  K  E  L  :  V  *  L  D  *  E  *  D  M  E  L  F  H  G  V  L  L  N  S  F  G  E  Q  S  N  H  I  M  C  L  L  L  L  K  L  L  L  V  L  L  *  R  T  P  R  I  W  R :   M  *  K  W  H  W  C  K  K  G  R  D  Y  L  I  S  *  K  K  S  R  F  L  I  H  T  L  A  I  L  I  S  F  S  V  K  *  R  L  E  W  M  L  R  N  *  R :   K  T  L  R  L  W  E  *  *  S  V  T  T  T  A  R  S  *  R  D  M  S  V  S  L  *  A  S  P  S  T  P  R  H  *  *  N  A  S  S  T  S  I  D  L  A  L  G  R  Y  D  K  I  *  S  V  L  C  S  H  A  I  I  L  Q  K  *  V  F  V  W  K  *  G  V  T  E  C  S  S  S  V  H  Y  V  E  K  M  A  I  Q  W  H  L  *  F  Y  T  F  R  L  G  L  F  D  P  *  L  Q  K  I  H  I  V  I  H  K  R  V  G  L  I  *  R  N  N  L  V  F  :  Q  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24473" stop="24246"/>
                    <exon start="22150" stop="22067"/>
                    <exon start="21968" stop="21814"/>
                    <exon start="21690" stop="21593"/>
                    <exon start="20828" stop="20720"/>
                    <exon start="19657" stop="19500"/>
                    <exon start="19261" stop="19119"/>
                    <exon start="18988" stop="18848"/>
                    <exon start="18236" stop="18105"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMGVIELCNISSISIVRAKPSSLNEGNRRRRIACMASSVSVQEEESHQQKQGVNGGSFIRTHLLKLSPYQPILPFEVLSTRLGRKPEDIVKLDANENPYGPPPEVNEALGSMKFPYIYPDPESRTLRAALAEDSGLESEYILAGCGADELIDLIMRCILDPGDKIVDCPPTFTMYEFDAAVNGAGVIKVPRNPDFSLDVERITEVVEREKPKCIFLTSPNNPDGSIIDDETLLEILHLPILVILDEAYVEFSGMESKMKWVKKHENLIVLRTFSKRAGLAGLRVGYGAFPRSIIEFLWRAKQPYNVSVAAEVAACAALKNPTYLENVKVALVQERERLFNLLKEVPFLDPYPSYSNFILCKVTSGMDAKKLKEDLATMGVMIRHYNSKELKGYVRVSVGKPEHTEALMKCLKHFY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24669" e_stop="24620"/>
            <exon e_start="24490" e_stop="24246"/>
            <exon e_start="22150" e_stop="22067"/>
            <exon e_start="21968" e_stop="21814"/>
            <exon e_start="21690" e_stop="21593"/>
            <exon e_start="20828" e_stop="20720"/>
            <exon e_start="19657" e_stop="19500"/>
            <exon e_start="19279" e_stop="19210"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.847" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.839" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24669" e_stop="24620" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.847">
            <gDNA_intron_boundary i_start="24619" i_stop="24491" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24490" e_stop="24246" e_length="245"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22150" e_stop="22067" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21968" e_stop="21814" e_length="155"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21690" e_stop="21593" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.839">
            <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20828" e_stop="20720" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.959">
            <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19657" e_stop="19500" e_length="158"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19499" i_stop="19280" i_length="220"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19279" e_stop="19210" e_length="70"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24669" stop="24620"/>
              <exon start="24490" stop="24252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24665" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24653" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24653" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24653" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24653" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24653" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24649" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24649" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24649" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24649" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24649" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24631" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24622" stop="24620"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24392" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24297" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24294" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21914" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19500"/>
              <exon start="19279" stop="19210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21884" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCTCCTATTGCCTGCAAAACTTGTTCCTCTCCCGCCGGCTATCCAGTT : GATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAG : GTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG : GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG : ATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG : TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG : TATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTTTCTGGAATGGAGTCTAAGATGAAGTGGGTGAAGAAGCATGAAAATCTGATTGTTCTTCGCACGTTCAGCAAAAGAGCTG : TGGTATTCCAATCCTCAGGTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGA</gDNA_template>
            <first_frame> T  L  L  L  P  A  K  L  V  P  L  P  P  A  I  Q  L :   I  *  Q  V  L  I  D  G  C  D  *  I  M  Q  H  F  I  Y  *  H  C  *  S  K  T  Q  F  F  K  R  R  E  S  E  E  E  N  C  L  Y  G  L  F  S  V  S  A  R  R  G  E  P  S  A  E  T  R  C  K  W  G  F  F  Y  S  D  P  S  S  *  I  V  P  L  P  T  H  F  A  I  *   : G  L  V  H  S  S  W  *  K  A  *  G  H  C  E  I  R  R  *  R  K  P  L  W  T  S  S  R   : G  K  R  S  F  G  V  Y  E  I  S  I  H  L  S  *  S  *  K  P  H  A  A  C  S  S  C  *  R  F  W  P  *  I  *  V  Y  S  C  R  V  R  C  R  *  T  H  *  F  D  N  E  :  M  H  I  G  S  W  *  Q  D  C  *  L  P  T  H  F  H  N  V  *  I  *  C  S  C  K  W  S  R  C  H  Q  G :   A  *  E  P  R  L  *  P  G  R  *  T  D  Y  R  S  G  *  T  *  E  T  K  V  H  I  S  D  I  T  *  *  S  *  W  E  :  Y  N  *  *  *  N  S  F  G  N  T  S  P  A  H  I  G  N  I  G  *  S  I  C  *  V  F  W  N  G  V  *  D  E  V  G  E  E  A  *  K  S  D  C  S  S  H  V  Q  Q  K  S  C :   G  I  P  I  L  R  F  S  W  T  K  S  R  I  W  S  F  S  T  E  Y  Y  * </first_frame>
            <second_frame>  L  S  Y  C  L  Q  N  L  F  L  S  R  R  L  S  S   : *  Y  S  K  F  *  L  M  G  V  I  E  L  C  N  I  S  S  I  S  I  V  R  A  K  P  S  S  L  N  E  G  N  R  R  R  R  I  A  C  M  A  S  S  V  S  V  Q  E  E  E  S  H  Q  Q  K  Q  G  V  N  G  G  S  F  I  R  T  H  L  L  K  L  S  P  Y  Q  P  I  L  P  F  E  :  V  L  S  T  R  L  G  R  K  P  E  D  I  V  K  L  D  A  N  E  N  P  Y  G  P  P  P  E  :  V  N  E  A  L  G  S  M  K  F  P  Y  I  Y  P  D  P  E  S  R  T  L  R  A  A  L  A  E  D  S  G  L  E  S  E  Y  I  L  A  G  C  G  A  D  E  L  I  D  L  I  M  R :   C  I  L  D  P  G  D  K  I  V  D  C  P  P  T  F  T  M  Y  E  F  D  A  A  V  N  G  A  G  V  I  K   : V  P  R  N  P  D  F  S  L  D  V  E  R  I  T  E  V  V  E  R  E  K  P  K  C  I  F  L  T  S  P  N  N  P  D  G  S :   I  I  D  D  E  T  L  L  E  I  L  H  L  P  I  L  V  I  L  D  E  A  Y  V  E  F  S  G  M  E  S  K  M  K  W  V  K  K  H  E  N  L  I  V  L  R  T  F  S  K  R  A   : V  V  F  Q  S  S  G  L  A  G  L  R  V  G  Y  G  A  F  P  R  S  I  I   </second_frame>
            <third_frame>   S  P  I  A  C  K  T  C  S  S  P  A  G  Y  P  V  :  D  I  A  S  F  D  *  W  V  *  L  N  Y  A  T  F  H  L  L  A  L  L  E  Q  N  P  V  L  *  T  K  G  I  G  G  G  E  L  L  V  W  P  L  Q  C  Q  C  K  K  R  R  A  I  S  R  N  K  V  *  M  G  V  L  L  F  G  P  I  F  L  N  C  P  L  T  N  P  F  C  H  L  R :   S  C  P  L  V  L  V  E  S  L  R  T  L  *  N  *  T  L  T  K  T  P  M  D  L  L  Q  R :   *  T  K  L  W  G  L  *  N  F  H  T  F  I  L  I  L  K  A  A  R  C  V  Q  L  L  L  K  I  L  A  L  N  L  S  I  F  L  Q  G  A  V  Q  M  N  S  L  I  *  *  *   : D  A  Y  W  I  L  V  T  R  L  L  T  A  H  P  L  S  Q  C  M  N  L  M  Q  L  *  M  E  Q  V  S  S  R  :  C  L  G  T  Q  T  L  A  W  T  L  N  G  L  P  K  W  L  N  V  R  N  Q  S  A  Y  F  *  H  H  L  I  I  L  M  G   : V  *  L  M  M  K  L  F  W  K  Y  F  T  C  P  Y  W  *  Y  W  M  K  H  M  L  S  F  L  E  W  S  L  R  *  S  G  *  R  S  M  K  I  *  L  F  F  A  R  S  A  K  E  L  :  W  Y  S  N  P  Q  V  *  L  D  *  E  *  D  M  E  L  F  H  G  V  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24473" stop="24246"/>
                    <exon start="22150" stop="22067"/>
                    <exon start="21968" stop="21814"/>
                    <exon start="21690" stop="21593"/>
                    <exon start="20828" stop="20720"/>
                    <exon start="19657" stop="19500"/>
                    <exon start="19279" stop="19212"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMGVIELCNISSISIVRAKPSSLNEGNRRRRIACMASSVSVQEEESHQQKQGVNGGSFIRTHLLKLSPYQPILPFEVLSTRLGRKPEDIVKLDANENPYGPPPEVNEALGSMKFPYIYPDPESRTLRAALAEDSGLESEYILAGCGADELIDLIMRCILDPGDKIVDCPPTFTMYEFDAAVNGAGVIKVPRNPDFSLDVERITEVVEREKPKCIFLTSPNNPDGSIIDDETLLEILHLPILVILDEAYVEFSGMESKMKWVKKHENLIVLRTFSKRAVVFQSSGLAGLRVGYGAFPRSII</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="24654" e_stop="24614"/>
            <exon e_start="24490" e_stop="24246"/>
            <exon e_start="22150" e_stop="22067"/>
            <exon e_start="21968" e_stop="21814"/>
            <exon e_start="21690" e_stop="21593"/>
            <exon e_start="20828" e_stop="20720"/>
            <exon e_start="19657" e_stop="19500"/>
            <exon e_start="19261" e_stop="19119"/>
            <exon e_start="18988" e_stop="18848"/>
            <exon e_start="18236" e_stop="17849"/>
            <exon e_start="17679" e_stop="17670"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.847" e_score="0.976"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.839" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.820" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="24654" e_stop="24614" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.847">
            <gDNA_intron_boundary i_start="24613" i_stop="24491" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24490" e_stop="24246" e_length="245"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22150" e_stop="22067" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21968" e_stop="21814" e_length="155"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21690" e_stop="21593" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.839">
            <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20828" e_stop="20720" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.959">
            <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19657" e_stop="19500" e_length="158"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.953">
            <gDNA_intron_boundary i_start="19499" i_stop="19262" i_length="238"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19261" e_stop="19119" e_length="143"/>
          </exon>
          <intron i_serial="8" don_prob="0.862" acc_prob="0.990">
            <gDNA_intron_boundary i_start="19118" i_stop="18989" i_length="130"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="18988" e_stop="18848" e_length="141"/>
          </exon>
          <intron i_serial="9" don_prob="0.952" acc_prob="0.986">
            <gDNA_intron_boundary i_start="18847" i_stop="18237" i_length="611"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="18236" e_stop="17849" e_length="388"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.820">
            <gDNA_intron_boundary i_start="17848" i_stop="17680" i_length="169"/>
          </intron>
          <exon e_serial="11" e_score="0.800">
            <gDNA_exon_boundary e_start="17679" e_stop="17670" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24654" stop="24614"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24654" stop="24614"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24654" stop="24614"/>
              <exon start="24490" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24392" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24297" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24294" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21884" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21688" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19500"/>
              <exon start="19261" stop="19119"/>
              <exon start="18988" stop="18936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21668" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19500"/>
              <exon start="19261" stop="19119"/>
              <exon start="18988" stop="18848"/>
              <exon start="18236" stop="18187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19521" stop="19500"/>
              <exon start="19261" stop="19119"/>
              <exon start="18988" stop="18848"/>
              <exon start="18236" stop="17849"/>
              <exon start="17679" stop="17670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19520" stop="19500"/>
              <exon start="19261" stop="19119"/>
              <exon start="18988" stop="18848"/>
              <exon start="18236" stop="17849"/>
              <exon start="17679" stop="17670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAAACTTGTTCCTCTCCCGCCGGCTATCCAGTTGTACCA : GATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAG : GTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG : GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG : ATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG : TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG : TATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTTTCTGGAATGGAGTCTAAGATGAAGTGGGTGAAGAAGCATGAAAATCTGATTGTTCTTCGCACGTTCAGCAAAAGAGCTG : GTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGAATTCCTTTGGCGAGCAAAGCAACCATATAATGTGTCTGTTGCTGCTGAAGTTGCTGCTTGTGCTGCTTTAAAGAACCCCACGTATCTGGAG : AATGTGAAAGTGGCACTGGTGCAAGAAAGGGAGAGACTATTTAATCTCTTGAAAGAAGTCCCGTTTCTTGATCCATACCCTAGCTATTCTAATTTCATTCTCTGTAAAGTAACGTCTGGAATGGATGCTAAGAAATTGAAG : GAAGACCTTGCGACTATGGGAGTGATGATCCGTCACTACAACAGCAAGGAGTTGAAGGGATATGTCCGTGTCTCTGTAGGCAAGCCCGAGCACACCGAGGCATTGATGAAATGCCTCAAGCACTTCTATTGATCTTGCTTTGGGTCGGTACGACAAAATCTGAAGTGTCTTGTGTTCTCATGCTATCATTCTTCAGAAATAAGTCTTTGTATGGAAATGAGGAGTCACAGAGTGTTCTTCAAGTGTACATTATGTTGAAAAAATGGCCATACAATGGCATTTGTAGTTTTATACCTTTAGACTTGGTCTTTTTGACCCTTGATTGCAAAAAATTCATATTGTAATTCATAAAAGGGTTGGACTCATTTGAAGAAATAATTTAGTTTTT : CAAGAAAAAG</gDNA_template>
            <first_frame> A  K  L  V  P  L  P  P  A  I  Q  L  Y  Q :   I  *  Q  V  L  I  D  G  C  D  *  I  M  Q  H  F  I  Y  *  H  C  *  S  K  T  Q  F  F  K  R  R  E  S  E  E  E  N  C  L  Y  G  L  F  S  V  S  A  R  R  G  E  P  S  A  E  T  R  C  K  W  G  F  F  Y  S  D  P  S  S  *  I  V  P  L  P  T  H  F  A  I  *   : G  L  V  H  S  S  W  *  K  A  *  G  H  C  E  I  R  R  *  R  K  P  L  W  T  S  S  R   : G  K  R  S  F  G  V  Y  E  I  S  I  H  L  S  *  S  *  K  P  H  A  A  C  S  S  C  *  R  F  W  P  *  I  *  V  Y  S  C  R  V  R  C  R  *  T  H  *  F  D  N  E  :  M  H  I  G  S  W  *  Q  D  C  *  L  P  T  H  F  H  N  V  *  I  *  C  S  C  K  W  S  R  C  H  Q  G :   A  *  E  P  R  L  *  P  G  R  *  T  D  Y  R  S  G  *  T  *  E  T  K  V  H  I  S  D  I  T  *  *  S  *  W  E  :  Y  N  *  *  *  N  S  F  G  N  T  S  P  A  H  I  G  N  I  G  *  S  I  C  *  V  F  W  N  G  V  *  D  E  V  G  E  E  A  *  K  S  D  C  S  S  H  V  Q  Q  K  S  W :   F  S  W  T  K  S  R  I  W  S  F  S  T  E  Y  Y  *  I  P  L  A  S  K  A  T  I  *  C  V  C  C  C  *  S  C  C  L  C  C  F  K  E  P  H  V  S  G   : E  C  E  S  G  T  G  A  R  K  G  E  T  I  *  S  L  E  R  S  P  V  S  *  S  I  P  *  L  F  *  F  H  S  L  *  S  N  V  W  N  G  C  *  E  I  E   : G  R  P  C  D  Y  G  S  D  D  P  S  L  Q  Q  Q  G  V  E  G  I  C  P  C  L  C  R  Q  A  R  A  H  R  G  I  D  E  M  P  Q  A  L  L  L  I  L  L  W  V  G  T  T  K  S  E  V  S  C  V  L  M  L  S  F  F  R  N  K  S  L  Y  G  N  E  E  S  Q  S  V  L  Q  V  Y  I  M  L  K  K  W  P  Y  N  G  I  C  S  F  I  P  L  D  L  V  F  L  T  L  D  C  K  K  F  I  L  *  F  I  K  G  L  D  S  F  E  E  I  I  *  F  F :   K  K  K </first_frame>
            <second_frame>  Q  N  L  F  L  S  R  R  L  S  S  C  T   : R  Y  S  K  F  *  L  M  G  V  I  E  L  C  N  I  S  S  I  S  I  V  R  A  K  P  S  S  L  N  E  G  N  R  R  R  R  I  A  C  M  A  S  S  V  S  V  Q  E  E  E  S  H  Q  Q  K  Q  G  V  N  G  G  S  F  I  R  T  H  L  L  K  L  S  P  Y  Q  P  I  L  P  F  E  :  V  L  S  T  R  L  G  R  K  P  E  D  I  V  K  L  D  A  N  E  N  P  Y  G  P  P  P  E  :  V  N  E  A  L  G  S  M  K  F  P  Y  I  Y  P  D  P  E  S  R  T  L  R  A  A  L  A  E  D  S  G  L  E  S  E  Y  I  L  A  G  C  G  A  D  E  L  I  D  L  I  M  R :   C  I  L  D  P  G  D  K  I  V  D  C  P  P  T  F  T  M  Y  E  F  D  A  A  V  N  G  A  G  V  I  K   : V  P  R  N  P  D  F  S  L  D  V  E  R  I  T  E  V  V  E  R  E  K  P  K  C  I  F  L  T  S  P  N  N  P  D  G  S :   I  I  D  D  E  T  L  L  E  I  L  H  L  P  I  L  V  I  L  D  E  A  Y  V  E  F  S  G  M  E  S  K  M  K  W  V  K  K  H  E  N  L  I  V  L  R  T  F  S  K  R  A   : G  L  A  G  L  R  V  G  Y  G  A  F  P  R  S  I  I  E  F  L  W  R  A  K  Q  P  Y  N  V  S  V  A  A  E  V  A  A  C  A  A  L  K  N  P  T  Y  L  E  :  N  V  K  V  A  L  V  Q  E  R  E  R  L  F  N  L  L  K  E  V  P  F  L  D  P  Y  P  S  Y  S  N  F  I  L  C  K  V  T  S  G  M  D  A  K  K  L  K  :  E  D  L  A  T  M  G  V  M  I  R  H  Y  N  S  K  E  L  K  G  Y  V  R  V  S  V  G  K  P  E  H  T  E  A  L  M  K  C  L  K  H  F  Y  *  S  C  F  G  S  V  R  Q  N  L  K  C  L  V  F  S  C  Y  H  S  S  E  I  S  L  C  M  E  M  R  S  H  R  V  F  F  K  C  T  L  C  *  K  N  G  H  T  M  A  F  V  V  L  Y  L  *  T  W  S  F  *  P  L  I  A  K  N  S  Y  C  N  S  *  K  G  W  T  H  L  K  K  *  F  S  F   : S  R  K   </second_frame>
            <third_frame>   K  T  C  S  S  P  A  G  Y  P  V  V  P  :  D  I  A  S  F  D  *  W  V  *  L  N  Y  A  T  F  H  L  L  A  L  L  E  Q  N  P  V  L  *  T  K  G  I  G  G  G  E  L  L  V  W  P  L  Q  C  Q  C  K  K  R  R  A  I  S  R  N  K  V  *  M  G  V  L  L  F  G  P  I  F  L  N  C  P  L  T  N  P  F  C  H  L  R :   S  C  P  L  V  L  V  E  S  L  R  T  L  *  N  *  T  L  T  K  T  P  M  D  L  L  Q  R :   *  T  K  L  W  G  L  *  N  F  H  T  F  I  L  I  L  K  A  A  R  C  V  Q  L  L  L  K  I  L  A  L  N  L  S  I  F  L  Q  G  A  V  Q  M  N  S  L  I  *  *  *   : D  A  Y  W  I  L  V  T  R  L  L  T  A  H  P  L  S  Q  C  M  N  L  M  Q  L  *  M  E  Q  V  S  S  R  :  C  L  G  T  Q  T  L  A  W  T  L  N  G  L  P  K  W  L  N  V  R  N  Q  S  A  Y  F  *  H  H  L  I  I  L  M  G   : V  *  L  M  M  K  L  F  W  K  Y  F  T  C  P  Y  W  *  Y  W  M  K  H  M  L  S  F  L  E  W  S  L  R  *  S  G  *  R  S  M  K  I  *  L  F  F  A  R  S  A  K  E  L  :  V  *  L  D  *  E  *  D  M  E  L  F  H  G  V  L  L  N  S  F  G  E  Q  S  N  H  I  M  C  L  L  L  L  K  L  L  L  V  L  L  *  R  T  P  R  I  W  R :   M  *  K  W  H  W  C  K  K  G  R  D  Y  L  I  S  *  K  K  S  R  F  L  I  H  T  L  A  I  L  I  S  F  S  V  K  *  R  L  E  W  M  L  R  N  *  R :   K  T  L  R  L  W  E  *  *  S  V  T  T  T  A  R  S  *  R  D  M  S  V  S  L  *  A  S  P  S  T  P  R  H  *  *  N  A  S  S  T  S  I  D  L  A  L  G  R  Y  D  K  I  *  S  V  L  C  S  H  A  I  I  L  Q  K  *  V  F  V  W  K  *  G  V  T  E  C  S  S  S  V  H  Y  V  E  K  M  A  I  Q  W  H  L  *  F  Y  T  F  R  L  G  L  F  D  P  *  L  Q  K  I  H  I  V  I  H  K  R  V  G  L  I  *  R  N  N  L  V  F  :  Q  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24473" stop="24246"/>
                    <exon start="22150" stop="22067"/>
                    <exon start="21968" stop="21814"/>
                    <exon start="21690" stop="21593"/>
                    <exon start="20828" stop="20720"/>
                    <exon start="19657" stop="19500"/>
                    <exon start="19261" stop="19119"/>
                    <exon start="18988" stop="18848"/>
                    <exon start="18236" stop="18105"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMGVIELCNISSISIVRAKPSSLNEGNRRRRIACMASSVSVQEEESHQQKQGVNGGSFIRTHLLKLSPYQPILPFEVLSTRLGRKPEDIVKLDANENPYGPPPEVNEALGSMKFPYIYPDPESRTLRAALAEDSGLESEYILAGCGADELIDLIMRCILDPGDKIVDCPPTFTMYEFDAAVNGAGVIKVPRNPDFSLDVERITEVVEREKPKCIFLTSPNNPDGSIIDDETLLEILHLPILVILDEAYVEFSGMESKMKWVKKHENLIVLRTFSKRAGLAGLRVGYGAFPRSIIEFLWRAKQPYNVSVAAEVAACAALKNPTYLENVKVALVQERERLFNLLKEVPFLDPYPSYSNFILCKVTSGMDAKKLKEDLATMGVMIRHYNSKELKGYVRVSVGKPEHTEALMKCLKHFY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="24642" e_stop="24246"/>
            <exon e_start="22150" e_stop="22067"/>
            <exon e_start="21968" e_stop="21814"/>
            <exon e_start="21690" e_stop="21593"/>
            <exon e_start="20828" e_stop="20720"/>
            <exon e_start="19657" e_stop="19500"/>
            <exon e_start="19261" e_stop="19119"/>
            <exon e_start="18988" e_stop="18848"/>
            <exon e_start="18236" e_stop="17849"/>
            <exon e_start="17679" e_stop="17670"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="0.977"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.839" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.820" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="24642" e_stop="24246" e_length="397"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24245" i_stop="22151" i_length="2095"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22150" e_stop="22067" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="22066" i_stop="21969" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21968" e_stop="21814" e_length="155"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21813" i_stop="21691" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21690" e_stop="21593" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.839">
            <gDNA_intron_boundary i_start="21592" i_stop="20829" i_length="764"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="20828" e_stop="20720" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.959">
            <gDNA_intron_boundary i_start="20719" i_stop="19658" i_length="1062"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19657" e_stop="19500" e_length="158"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.953">
            <gDNA_intron_boundary i_start="19499" i_stop="19262" i_length="238"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19261" e_stop="19119" e_length="143"/>
          </exon>
          <intron i_serial="7" don_prob="0.862" acc_prob="0.990">
            <gDNA_intron_boundary i_start="19118" i_stop="18989" i_length="130"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="18988" e_stop="18848" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.952" acc_prob="0.986">
            <gDNA_intron_boundary i_start="18847" i_stop="18237" i_length="611"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="18236" e_stop="17849" e_length="388"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.820">
            <gDNA_intron_boundary i_start="17848" i_stop="17680" i_length="169"/>
          </intron>
          <exon e_serial="10" e_score="0.800">
            <gDNA_exon_boundary e_start="17679" e_stop="17670" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24642" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24392" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24297" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24294" stop="24246"/>
              <exon start="22150" stop="22067"/>
              <exon start="21968" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21884" stop="21814"/>
              <exon start="21690" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21688" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19500"/>
              <exon start="19261" stop="19119"/>
              <exon start="18988" stop="18936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21668" stop="21593"/>
              <exon start="20828" stop="20720"/>
              <exon start="19657" stop="19500"/>
              <exon start="19261" stop="19119"/>
              <exon start="18988" stop="18848"/>
              <exon start="18236" stop="18187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19521" stop="19500"/>
              <exon start="19261" stop="19119"/>
              <exon start="18988" stop="18848"/>
              <exon start="18236" stop="17849"/>
              <exon start="17679" stop="17670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19520" stop="19500"/>
              <exon start="19261" stop="19119"/>
              <exon start="18988" stop="18848"/>
              <exon start="18236" stop="17849"/>
              <exon start="17679" stop="17670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCTCCCGCCGGCTATCCAGTTGTACCAGTTTCTCTCTCTACTTTCTCTCTCTCTATATTATATATACAGTTTCTCTCTCTACTCTCTCTATATATGTAATGGTTTATTGATTTTGCTTTGAGTTTTTCAAGAAATGAACTTTGAATGCAGGATATAGCAAGTTTTGATTGATGGGTGTGATTGAATTATGCAACATTTCATCTATTAGCATTGTTAGAGCAAAACCCAGTTCTTTAAACGAAGGGAATCGGAGGAGGAGAATTGCTTGTATGGCCTCTTCAGTGTCAGTGCAAGAAGAGGAGAGCCATCAGCAGAAACAAGGTGTAAATGGGGGTTCTTTTATTCGGACCCATCTTCTTAAATTGTCCCCTTACCAACCCATTTTGCCATTTGAG : GTCTTGTCCACTCGTCTTGGTAGAAAGCCTGAGGACATTGTGAAATTAGACGCTAACGAAAACCCCTATGGACCTCCTCCAGAG : GTAAACGAAGCTTTGGGGTCTATGAAATTTCCATACATTTATCCTGATCCTGAAAGCCGCACGCTGCGTGCAGCTCTTGCTGAAGATTCTGGCCTTGAATCTGAGTATATTCTTGCAGGGTGCGGTGCAGATGAACTCATTGATTTGATAATGAG : ATGCATATTGGATCCTGGTGACAAGATTGTTGACTGCCCACCCACTTTCACAATGTATGAATTTGATGCAGCTGTAAATGGAGCAGGTGTCATCAAGG : TGCCTAGGAACCCAGACTTTAGCCTGGACGTTGAACGGATTACCGAAGTGGTTGAACGTGAGAAACCAAAGTGCATATTTCTGACATCACCTAATAATCCTGATGGGAG : TATAATTGATGATGAAACTCTTTTGGAAATACTTCACCTGCCCATATTGGTAATATTGGATGAAGCATATGTTGAGTTTTCTGGAATGGAGTCTAAGATGAAGTGGGTGAAGAAGCATGAAAATCTGATTGTTCTTCGCACGTTCAGCAAAAGAGCTG : GTTTAGCTGGACTAAGAGTAGGATATGGAGCTTTTCCACGGAGTATTATTGAATTCCTTTGGCGAGCAAAGCAACCATATAATGTGTCTGTTGCTGCTGAAGTTGCTGCTTGTGCTGCTTTAAAGAACCCCACGTATCTGGAG : AATGTGAAAGTGGCACTGGTGCAAGAAAGGGAGAGACTATTTAATCTCTTGAAAGAAGTCCCGTTTCTTGATCCATACCCTAGCTATTCTAATTTCATTCTCTGTAAAGTAACGTCTGGAATGGATGCTAAGAAATTGAAG : GAAGACCTTGCGACTATGGGAGTGATGATCCGTCACTACAACAGCAAGGAGTTGAAGGGATATGTCCGTGTCTCTGTAGGCAAGCCCGAGCACACCGAGGCATTGATGAAATGCCTCAAGCACTTCTATTGATCTTGCTTTGGGTCGGTACGACAAAATCTGAAGTGTCTTGTGTTCTCATGCTATCATTCTTCAGAAATAAGTCTTTGTATGGAAATGAGGAGTCACAGAGTGTTCTTCAAGTGTACATTATGTTGAAAAAATGGCCATACAATGGCATTTGTAGTTTTATACCTTTAGACTTGGTCTTTTTGACCCTTGATTGCAAAAAATTCATATTGTAATTCATAAAAGGGTTGGACTCATTTGAAGAAATAATTTAGTTTTT : CAAGAAAAAG</gDNA_template>
            <first_frame> P  L  P  P  A  I  Q  L  Y  Q  F  L  S  L  L  S  L  S  L  Y  Y  I  Y  S  F  S  L  Y  S  L  Y  I  C  N  G  L  L  I  L  L  *  V  F  Q  E  M  N  F  E  C  R  I  *  Q  V  L  I  D  G  C  D  *  I  M  Q  H  F  I  Y  *  H  C  *  S  K  T  Q  F  F  K  R  R  E  S  E  E  E  N  C  L  Y  G  L  F  S  V  S  A  R  R  G  E  P  S  A  E  T  R  C  K  W  G  F  F  Y  S  D  P  S  S  *  I  V  P  L  P  T  H  F  A  I  *   : G  L  V  H  S  S  W  *  K  A  *  G  H  C  E  I  R  R  *  R  K  P  L  W  T  S  S  R   : G  K  R  S  F  G  V  Y  E  I  S  I  H  L  S  *  S  *  K  P  H  A  A  C  S  S  C  *  R  F  W  P  *  I  *  V  Y  S  C  R  V  R  C  R  *  T  H  *  F  D  N  E  :  M  H  I  G  S  W  *  Q  D  C  *  L  P  T  H  F  H  N  V  *  I  *  C  S  C  K  W  S  R  C  H  Q  G :   A  *  E  P  R  L  *  P  G  R  *  T  D  Y  R  S  G  *  T  *  E  T  K  V  H  I  S  D  I  T  *  *  S  *  W  E  :  Y  N  *  *  *  N  S  F  G  N  T  S  P  A  H  I  G  N  I  G  *  S  I  C  *  V  F  W  N  G  V  *  D  E  V  G  E  E  A  *  K  S  D  C  S  S  H  V  Q  Q  K  S  W :   F  S  W  T  K  S  R  I  W  S  F  S  T  E  Y  Y  *  I  P  L  A  S  K  A  T  I  *  C  V  C  C  C  *  S  C  C  L  C  C  F  K  E  P  H  V  S  G   : E  C  E  S  G  T  G  A  R  K  G  E  T  I  *  S  L  E  R  S  P  V  S  *  S  I  P  *  L  F  *  F  H  S  L  *  S  N  V  W  N  G  C  *  E  I  E   : G  R  P  C  D  Y  G  S  D  D  P  S  L  Q  Q  Q  G  V  E  G  I  C  P  C  L  C  R  Q  A  R  A  H  R  G  I  D  E  M  P  Q  A  L  L  L  I  L  L  W  V  G  T  T  K  S  E  V  S  C  V  L  M  L  S  F  F  R  N  K  S  L  Y  G  N  E  E  S  Q  S  V  L  Q  V  Y  I  M  L  K  K  W  P  Y  N  G  I  C  S  F  I  P  L  D  L  V  F  L  T  L  D  C  K  K  F  I  L  *  F  I  K  G  L  D  S  F  E  E  I  I  *  F  F :   K  K  K </first_frame>
            <second_frame>  L  S  R  R  L  S  S  C  T  S  F  S  L  Y  F  L  S  L  Y  I  I  Y  T  V  S  L  S  T  L  S  I  Y  V  M  V  Y  *  F  C  F  E  F  F  K  K  *  T  L  N  A  G  Y  S  K  F  *  L  M  G  V  I  E  L  C  N  I  S  S  I  S  I  V  R  A  K  P  S  S  L  N  E  G  N  R  R  R  R  I  A  C  M  A  S  S  V  S  V  Q  E  E  E  S  H  Q  Q  K  Q  G  V  N  G  G  S  F  I  R  T  H  L  L  K  L  S  P  Y  Q  P  I  L  P  F  E  :  V  L  S  T  R  L  G  R  K  P  E  D  I  V  K  L  D  A  N  E  N  P  Y  G  P  P  P  E  :  V  N  E  A  L  G  S  M  K  F  P  Y  I  Y  P  D  P  E  S  R  T  L  R  A  A  L  A  E  D  S  G  L  E  S  E  Y  I  L  A  G  C  G  A  D  E  L  I  D  L  I  M  R :   C  I  L  D  P  G  D  K  I  V  D  C  P  P  T  F  T  M  Y  E  F  D  A  A  V  N  G  A  G  V  I  K   : V  P  R  N  P  D  F  S  L  D  V  E  R  I  T  E  V  V  E  R  E  K  P  K  C  I  F  L  T  S  P  N  N  P  D  G  S :   I  I  D  D  E  T  L  L  E  I  L  H  L  P  I  L  V  I  L  D  E  A  Y  V  E  F  S  G  M  E  S  K  M  K  W  V  K  K  H  E  N  L  I  V  L  R  T  F  S  K  R  A   : G  L  A  G  L  R  V  G  Y  G  A  F  P  R  S  I  I  E  F  L  W  R  A  K  Q  P  Y  N  V  S  V  A  A  E  V  A  A  C  A  A  L  K  N  P  T  Y  L  E  :  N  V  K  V  A  L  V  Q  E  R  E  R  L  F  N  L  L  K  E  V  P  F  L  D  P  Y  P  S  Y  S  N  F  I  L  C  K  V  T  S  G  M  D  A  K  K  L  K  :  E  D  L  A  T  M  G  V  M  I  R  H  Y  N  S  K  E  L  K  G  Y  V  R  V  S  V  G  K  P  E  H  T  E  A  L  M  K  C  L  K  H  F  Y  *  S  C  F  G  S  V  R  Q  N  L  K  C  L  V  F  S  C  Y  H  S  S  E  I  S  L  C  M  E  M  R  S  H  R  V  F  F  K  C  T  L  C  *  K  N  G  H  T  M  A  F  V  V  L  Y  L  *  T  W  S  F  *  P  L  I  A  K  N  S  Y  C  N  S  *  K  G  W  T  H  L  K  K  *  F  S  F   : S  R  K   </second_frame>
            <third_frame>   S  P  A  G  Y  P  V  V  P  V  S  L  S  T  F  S  L  S  I  L  Y  I  Q  F  L  S  L  L  S  L  Y  M  *  W  F  I  D  F  A  L  S  F  S  R  N  E  L  *  M  Q  D  I  A  S  F  D  *  W  V  *  L  N  Y  A  T  F  H  L  L  A  L  L  E  Q  N  P  V  L  *  T  K  G  I  G  G  G  E  L  L  V  W  P  L  Q  C  Q  C  K  K  R  R  A  I  S  R  N  K  V  *  M  G  V  L  L  F  G  P  I  F  L  N  C  P  L  T  N  P  F  C  H  L  R :   S  C  P  L  V  L  V  E  S  L  R  T  L  *  N  *  T  L  T  K  T  P  M  D  L  L  Q  R :   *  T  K  L  W  G  L  *  N  F  H  T  F  I  L  I  L  K  A  A  R  C  V  Q  L  L  L  K  I  L  A  L  N  L  S  I  F  L  Q  G  A  V  Q  M  N  S  L  I  *  *  *   : D  A  Y  W  I  L  V  T  R  L  L  T  A  H  P  L  S  Q  C  M  N  L  M  Q  L  *  M  E  Q  V  S  S  R  :  C  L  G  T  Q  T  L  A  W  T  L  N  G  L  P  K  W  L  N  V  R  N  Q  S  A  Y  F  *  H  H  L  I  I  L  M  G   : V  *  L  M  M  K  L  F  W  K  Y  F  T  C  P  Y  W  *  Y  W  M  K  H  M  L  S  F  L  E  W  S  L  R  *  S  G  *  R  S  M  K  I  *  L  F  F  A  R  S  A  K  E  L  :  V  *  L  D  *  E  *  D  M  E  L  F  H  G  V  L  L  N  S  F  G  E  Q  S  N  H  I  M  C  L  L  L  L  K  L  L  L  V  L  L  *  R  T  P  R  I  W  R :   M  *  K  W  H  W  C  K  K  G  R  D  Y  L  I  S  *  K  K  S  R  F  L  I  H  T  L  A  I  L  I  S  F  S  V  K  *  R  L  E  W  M  L  R  N  *  R :   K  T  L  R  L  W  E  *  *  S  V  T  T  T  A  R  S  *  R  D  M  S  V  S  L  *  A  S  P  S  T  P  R  H  *  *  N  A  S  S  T  S  I  D  L  A  L  G  R  Y  D  K  I  *  S  V  L  C  S  H  A  I  I  L  Q  K  *  V  F  V  W  K  *  G  V  T  E  C  S  S  S  V  H  Y  V  E  K  M  A  I  Q  W  H  L  *  F  Y  T  F  R  L  G  L  F  D  P  *  L  Q  K  I  H  I  V  I  H  K  R  V  G  L  I  *  R  N  N  L  V  F  :  Q  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24473" stop="24246"/>
                    <exon start="22150" stop="22067"/>
                    <exon start="21968" stop="21814"/>
                    <exon start="21690" stop="21593"/>
                    <exon start="20828" stop="20720"/>
                    <exon start="19657" stop="19500"/>
                    <exon start="19261" stop="19119"/>
                    <exon start="18988" stop="18848"/>
                    <exon start="18236" stop="18105"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMGVIELCNISSISIVRAKPSSLNEGNRRRRIACMASSVSVQEEESHQQKQGVNGGSFIRTHLLKLSPYQPILPFEVLSTRLGRKPEDIVKLDANENPYGPPPEVNEALGSMKFPYIYPDPESRTLRAALAEDSGLESEYILAGCGADELIDLIMRCILDPGDKIVDCPPTFTMYEFDAAVNGAGVIKVPRNPDFSLDVERITEVVEREKPKCIFLTSPNNPDGSIIDDETLLEILHLPILVILDEAYVEFSGMESKMKWVKKHENLIVLRTFSKRAGLAGLRVGYGAFPRSIIEFLWRAKQPYNVSVAAEVAACAALKNPTYLENVKVALVQERERLFNLLKEVPFLDPYPSYSNFILCKVTSGMDAKKLKEDLATMGVMIRHYNSKELKGYVRVSVGKPEHTEALMKCLKHFY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="18107" e_stop="17848"/>
            <exon e_start="17679" e_stop="17671"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.820" e_score="0.965"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="18107" e_stop="17848" e_length="260"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.820">
            <gDNA_intron_boundary i_start="17847" i_stop="17680" i_length="168"/>
          </intron>
          <exon e_serial="2" e_score="0.778">
            <gDNA_exon_boundary e_start="17679" e_stop="17671" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18107" stop="17848"/>
              <exon start="17679" stop="17671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370126" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATCTTGCTTTGGGTCGGTACGACAAAATCTGAAGTGTCTTGTGTTCTCATGCTATCATTCTTCAGAAATAAGTCTTTGTATGGAAATGAGGAGTCACAGAGTGTTCTTCAAGTGTACATTATGTTGAAAAAATGGCCATACAATGGCATTTGTAGTTTTATACCTTTAGACTTGGTCTTTTTGACCCTTGATTGCAAAAAATTCATATTGTAATTCATAAAAGGGTTGGACTCATTTGAAGAAATAATTTAGTTTTTC : CAAGAAAAA</gDNA_template>
            <first_frame> *  S  C  F  G  S  V  R  Q  N  L  K  C  L  V  F  S  C  Y  H  S  S  E  I  S  L  C  M  E  M  R  S  H  R  V  F  F  K  C  T  L  C  *  K  N  G  H  T  M  A  F  V  V  L  Y  L  *  T  W  S  F  *  P  L  I  A  K  N  S  Y  C  N  S  *  K  G  W  T  H  L  K  K  *  F  S  F  S :   K  K   </first_frame>
            <second_frame>  D  L  A  L  G  R  Y  D  K  I  *  S  V  L  C  S  H  A  I  I  L  Q  K  *  V  F  V  W  K  *  G  V  T  E  C  S  S  S  V  H  Y  V  E  K  M  A  I  Q  W  H  L  *  F  Y  T  F  R  L  G  L  F  D  P  *  L  Q  K  I  H  I  V  I  H  K  R  V  G  L  I  *  R  N  N  L  V  F   : P  R  K  </second_frame>
            <third_frame>   I  L  L  W  V  G  T  T  K  S  E  V  S  C  V  L  M  L  S  F  F  R  N  K  S  L  Y  G  N  E  E  S  Q  S  V  L  Q  V  Y  I  M  L  K  K  W  P  Y  N  G  I  C  S  F  I  P  L  D  L  V  F  L  T  L  D  C  K  K  F  I  L  *  F  I  K  G  L  D  S  F  E  E  I  I  *  F  F  :  Q  E  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18105" stop="17893"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLWVGTTKSEVSCVLMLSFFRNKSLYGNEESQSVLQVYIMLKKWPYNGICSFIPLDLVFLTLDCKKFIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="31127" PGL_stop="26827"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31127" e_stop="30801"/>
            <exon e_start="28065" e_stop="27901"/>
            <exon e_start="27135" e_stop="26827"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.876" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31127" e_stop="30801" e_length="327"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.790">
            <gDNA_intron_boundary i_start="30800" i_stop="28066" i_length="2735"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28065" e_stop="27901" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.876">
            <gDNA_intron_boundary i_start="27900" i_stop="27136" i_length="765"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="27135" e_stop="26827" e_length="309"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31127" stop="30801"/>
              <exon start="28065" stop="27901"/>
              <exon start="27135" stop="27082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31121" stop="30801"/>
              <exon start="28065" stop="27901"/>
              <exon start="27135" stop="26827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701801" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGATTGAATTTTTGTTGAATTGGGGATCGAATTTGATGGAATGGACCTTCTGTGTAAAGTCTATGGCGGAACCTCTGATGAAGAAGACGACAATGGTGGAATTCACCTTCAAAGACCCATTTTGCCACAGCCGAAACGAGCCAAATTCGAGAATTTTCATCAAGTTGGCAATCATGTGCCACTCTACAAGCCTAATCCAAGTACCAATCTCCCAGCGCAAGCTTCCCTTCCAGGAAGATACATTTCTAAGAGAGAGAGAGCTGCCATGGATTCAGTGGAGAAAGTTCCAGACCTCAGCACAACGGTTTCCCCTAACAGTTCACCAG : TTTTAGGGAGCATTTTGGATTCAGTTCTGCCACATAATATTTTGTCAGCTTTGAGAGATCAAACTAAAATCTACGGGAACATGATCCACACGCCAGAAAGACTGTCTGTAGTTCTAGATGGACACAAAAGATCAGTTAATGCTGTACAGTGGTCTACAAGTCATG : CTCACCTTTTAGTATCTGCCGGAATGGATCAAACTGTCTGTATATGGAATGTGTGGAGCAGAGATCAGAAGAAAGCACGTGTACTTAATTGTCACAAAGCGGCTGTCAAAGATGTGAAGTGGTCGCCATATGGTCTATTTGTGCTCTCTTGTGGATATGACTGCACATCAAGGTTGATTGATGTTGAAAAAGGAACTGAAACCCAGGTTTTCAATGAGGATCAAGTTGTTGGAGTGGTAAAATTCCATCCAGATAATTATAATCTCTTTCTCTCTGGAGGTTCGAAAGGTCACCTTAAAATATGGGATA</gDNA_template>
            <first_frame> S  I  E  F  L  L  N  W  G  S  N  L  M  E  W  T  F  C  V  K  S  M  A  E  P  L  M  K  K  T  T  M  V  E  F  T  F  K  D  P  F  C  H  S  R  N  E  P  N  S  R  I  F  I  K  L  A  I  M  C  H  S  T  S  L  I  Q  V  P  I  S  Q  R  K  L  P  F  Q  E  D  T  F  L  R  E  R  E  L  P  W  I  Q  W  R  K  F  Q  T  S  A  Q  R  F  P  L  T  V  H  Q  :  F  *  G  A  F  W  I  Q  F  C  H  I  I  F  C  Q  L  *  E  I  K  L  K  S  T  G  T  *  S  T  R  Q  K  D  C  L  *  F  *  M  D  T  K  D  Q  L  M  L  Y  S  G  L  Q  V  M  :  L  T  F  *  Y  L  P  E  W  I  K  L  S  V  Y  G  M  C  G  A  E  I  R  R  K  H  V  Y  L  I  V  T  K  R  L  S  K  M  *  S  G  R  H  M  V  Y  L  C  S  L  V  D  M  T  A  H  Q  G  *  L  M  L  K  K  E  L  K  P  R  F  S  M  R  I  K  L  L  E  W  *  N  S  I  Q  I  I  I  I  S  F  S  L  E  V  R  K  V  T  L  K  Y  G  I </first_frame>
            <second_frame>  R  L  N  F  C  *  I  G  D  R  I  *  W  N  G  P  S  V  *  S  L  W  R  N  L  *  *  R  R  R  Q  W  W  N  S  P  S  K  T  H  F  A  T  A  E  T  S  Q  I  R  E  F  S  S  S  W  Q  S  C  A  T  L  Q  A  *  S  K  Y  Q  S  P  S  A  S  F  P  S  R  K  I  H  F  *  E  R  E  S  C  H  G  F  S  G  E  S  S  R  P  Q  H  N  G  F  P  *  Q  F  T  S :   F  R  E  H  F  G  F  S  S  A  T  *  Y  F  V  S  F  E  R  S  N  *  N  L  R  E  H  D  P  H  A  R  K  T  V  C  S  S  R  W  T  Q  K  I  S  *  C  C  T  V  V  Y  K  S  C :   S  P  F  S  I  C  R  N  G  S  N  C  L  Y  M  E  C  V  E  Q  R  S  E  E  S  T  C  T  *  L  S  Q  S  G  C  Q  R  C  E  V  V  A  I  W  S  I  C  A  L  L  W  I  *  L  H  I  K  V  D  *  C  *  K  R  N  *  N  P  G  F  Q  *  G  S  S  C  W  S  G  K  I  P  S  R  *  L  *  S  L  S  L  W  R  F  E  R  S  P  *  N  M  G   </second_frame>
            <third_frame>   D  *  I  F  V  E  L  G  I  E  F  D  G  M  D  L  L  C  K  V  Y  G  G  T  S  D  E  E  D  D  N  G  G  I  H  L  Q  R  P  I  L  P  Q  P  K  R  A  K  F  E  N  F  H  Q  V  G  N  H  V  P  L  Y  K  P  N  P  S  T  N  L  P  A  Q  A  S  L  P  G  R  Y  I  S  K  R  E  R  A  A  M  D  S  V  E  K  V  P  D  L  S  T  T  V  S  P  N  S  S  P   : V  L  G  S  I  L  D  S  V  L  P  H  N  I  L  S  A  L  R  D  Q  T  K  I  Y  G  N  M  I  H  T  P  E  R  L  S  V  V  L  D  G  H  K  R  S  V  N  A  V  Q  W  S  T  S  H   : A  H  L  L  V  S  A  G  M  D  Q  T  V  C  I  W  N  V  W  S  R  D  Q  K  K  A  R  V  L  N  C  H  K  A  A  V  K  D  V  K  W  S  P  Y  G  L  F  V  L  S  C  G  Y  D  C  T  S  R  L  I  D  V  E  K  G  T  E  T  Q  V  F  N  E  D  Q  V  V  G  V  V  K  F  H  P  D  N  Y  N  L  F  L  S  G  G  S  K  G  H  L  K  I  W  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31119" stop="30801"/>
                    <exon start="28065" stop="27901"/>
                    <exon start="27135" stop="26828"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFVELGIEFDGMDLLCKVYGGTSDEEDDNGGIHLQRPILPQPKRAKFENFHQVGNHVPLYKPNPSTNLPAQASLPGRYISKRERAAMDSVEKVPDLSTTVSPNSSPVLGSILDSVLPHNILSALRDQTKIYGNMIHTPERLSVVLDGHKRSVNAVQWSTSHAHLLVSAGMDQTVCIWNVWSRDQKKARVLNCHKAAVKDVKWSPYGLFVLSCGYDCTSRLIDVEKGTETQVFNEDQVVGVVKFHPDNYNLFLSGGSKGHLKIWD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="37985" PGL_stop="32304"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37985" e_stop="37946"/>
            <exon e_start="36010" e_stop="35731"/>
            <exon e_start="35628" e_stop="35494"/>
            <exon e_start="34787" e_stop="34731"/>
            <exon e_start="33437" e_stop="33303"/>
            <exon e_start="32607" e_stop="32304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.226" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.804" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.678" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37985" e_stop="37946" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.226">
            <gDNA_intron_boundary i_start="37945" i_stop="36011" i_length="1935"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36010" e_stop="35731" e_length="280"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.804">
            <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35628" e_stop="35494" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.980">
            <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34787" e_stop="34731" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.902" acc_prob="0.678">
            <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33437" e_stop="33303" e_length="135"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.981">
            <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="32607" e_stop="32304" e_length="304"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37985" stop="37946"/>
              <exon start="36010" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37976" stop="37946"/>
              <exon start="36010" stop="35731"/>
              <exon start="35628" stop="35527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37973" stop="37946"/>
              <exon start="36010" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37972" stop="37946"/>
              <exon start="36010" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37967" stop="37946"/>
              <exon start="36010" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37967" stop="37946"/>
              <exon start="36010" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36010" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36005" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36005" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35995" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35995" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35957" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33324" stop="33303"/>
              <exon start="32607" stop="32342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33321" stop="33303"/>
              <exon start="32607" stop="32342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGGGGCCTCACAACAACAAACTCTGCTGCTTCTACCAG : AATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCC : GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG : GAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAG : CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG : GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAATTGTTTATATATGTCTCCATAAATGTTGTGTTTTTACTTTCTTGAG</gDNA_template>
            <first_frame> S  G  A  S  Q  Q  Q  T  L  L  L  L  P   : E  *  R  V  L  W  G  P  T  L  V  S  A  R  *  E  E  V  Q  S  I  L  *  R  K  E  A  A  K  F  H  A  F  V  I  Q  M  *  N  L  L  G  K  N  C  F  L  Q  K  F  R  S  S  I  A  A  A  T  *  I  L  E  N  A  G  Q  F  F  P  L  Q  P  V  M  Q  M  I  R  M  T  Q  K  I  V  R  I  L  Q  K  M  K  M  N  P :   *  I  M  K  F  *  G  V  I  L  K  E  S  S  G  G  M  T  L  H  L  A  E  *  T  L  Q  L  *  *  G  I  N  M  E  G  P  M  M  F  N  *  L  R  R :   N  S  W  G  K  I  F  L  R  *  T  L  C  G  N  T  G  S  S :   D  L  F  R  *  L  K  K  S  T  Y  *  G  *  M  M  W  Q  T  H  *  N  A  G  E  L  F  H  I  F  V  I  A  L  R  S  *  K  S  G  L  G  *  G  R :   Q  *  A  F  S  S  I  W  M  N  P  E  A  V  Q  R  N  G  F  T  S  R  P  E  H  C  S  S  S  M  L  I  V  S  N  T  *  V  D  I  *  Y  K  K  V  E  E  T  L  V  F  F  I  N  Y  Y  F  I  V  Q  T  Q  F  F  I  L  F  P  F  D  V  N  Y  T  L  L  Q  T  T  A  Y  L  L  S  C  N  C  L  Y  M  S  P  *  M  L  C  F  Y  F  L  E </first_frame>
            <second_frame>  L  G  P  H  N  N  K  L  C  C  F  Y  Q  :  N  D  E  F  S  G  D  P  P  S  Y  L  L  V  R  R  R  S  R  A  Y  C  E  G  K  K  L  Q  N  F  M  L  S  L  Y  R  C  R  I  F  L  E  R  I  V  S  F  K  N  S  E  V  Q  *  L  P  P  P  K  Y  *  K  M  L  G  S  F  F  R  C  N  R  *  C  K  *  S  G  *  L  R  R  *  *  E  S  S  R  K  *  K  *  I   : R  K  *  *  N  F  K  G  *  S  *  K  N  R  R  A  G  *  L  C  I  *  R  N  R  P  C  S  S  D  K  E  *  I  W  K  V  L  *  C  S  I  D  *  E   : G  I  H  G  E  K  S  S  C  V  K  R  Y  V  E  I  Q  G  A   : A  I  F  S  V  N  *  R  R  V  P  T  E  A  R  *  C  G  K  H  I  E  M  L  G  S  C  F  T  Y  S  *  *  P  *  E  V  E  R  A  A  S  D  R  E   : G  S  E  H  F  H  R  Y  G  *  I  R  R  P  C  K  G  M  D  L  Q  V  D  Q  N  I  V  A  P  Q  C  *  *  L  A  I  H  R  *  I  Y  S  T  K  K  L  K  K  H  L  Y  S  L  L  I  T  I  S  L  C  R  H  N  F  L  Y  C  F  H  L  M  S  I  T  P  F  C  R  Q  Q  H  I  C  C  P  A  I  V  Y  I  C  L  H  K  C  C  V  F  T  F  L   </second_frame>
            <third_frame>   W  G  L  T  T  T  N  S  A  A  S  T  R :   M  T  S  S  L  G  T  H  P  R  I  C  S  L  G  G  G  P  E  H  I  V  K  E  R  S  C  K  I  S  C  F  R  Y  T  D  V  E  S  S  W  K  E  L  F  P  S  K  I  Q  K  F  N  S  C  R  H  L  N  T  R  K  C  W  A  V  F  S  A  A  T  G  D  A  N  D  P  D  D  S  E  D  S  K  N  P  P  E  N  E  N  E  S  :  V  N  N  E  I  L  R  G  N  L  E  R  I  V  G  R  D  D  S  A  F  S  G  I  D  L  A  A  L  I  R  N  K  Y  G  R  S  Y  D  V  Q  L  I  K  K  :  E  F  M  G  K  N  L  L  A  L  N  V  M  W  K  Y  R  E  Q  :  R  S  F  P  L  T  E  E  E  Y  L  L  R  L  D  D  V  A  N  T  L  K  C  W  G  A  V  S  H  I  R  N  S  L  E  K  L  K  E  R  P  R  I  G  K  :  A  V  S  I  F  I  D  M  D  E  S  G  G  R  A  K  E  W  I  Y  K  *  T  R  T  L  *  L  L  N  V  D  S  *  Q  Y  I  G  R  Y  I  V  Q  K  S  *  R  N  T  C  I  L  Y  *  L  L  F  H  C  A  D  T  I  F  Y  I  V  S  I  *  C  Q  L  H  P  S  A  D  N  S  I  F  V  V  L  Q  L  F  I  Y  V  S  I  N  V  V  F  L  L  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37983" stop="37946"/>
                    <exon start="36010" stop="35731"/>
                    <exon start="35628" stop="35494"/>
                    <exon start="34787" stop="34731"/>
                    <exon start="33437" stop="33303"/>
                    <exon start="32607" stop="32542"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WGLTTTNSAASTRMTSSLGTHPRICSLGGGPEHIVKERSCKISCFRYTDVESSWKELFPSKIQKFNSCRHLNTRKCWAVFSAATGDANDPDDSEDSKNPPENENESVNNEILRGNLERIVGRDDSAFSGIDLAALIRNKYGRSYDVQLIKKEFMGKNLLALNVMWKYREQRSFPLTEEEYLLRLDDVANTLKCWGAVSHIRNSLEKLKERPRIGKAVSIFIDMDESGGRAKEWIYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36020" e_stop="35731"/>
            <exon e_start="35628" e_stop="35494"/>
            <exon e_start="34787" e_stop="34731"/>
            <exon e_start="33437" e_stop="33303"/>
            <exon e_start="32607" e_stop="32304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.804" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.678" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36020" e_stop="35731" e_length="290"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.804">
            <gDNA_intron_boundary i_start="35730" i_stop="35629" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35628" e_stop="35494" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.980">
            <gDNA_intron_boundary i_start="35493" i_stop="34788" i_length="706"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34787" e_stop="34731" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.902" acc_prob="0.678">
            <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33437" e_stop="33303" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.981">
            <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="32607" e_stop="32304" e_length="304"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36020" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36020" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36014" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36013" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36010" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36005" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36005" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35995" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35995" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35957" stop="35731"/>
              <exon start="35628" stop="35494"/>
              <exon start="34787" stop="34731"/>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33324" stop="33303"/>
              <exon start="32607" stop="32342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33321" stop="33303"/>
              <exon start="32607" stop="32342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTTCAGAATGACGAGTTCTCTGGGGACCCACCCTCGTATCTGCTCGTTAGGAGGAGGTCCAGAGCATATTGTGAAGGAAAGAAGCTGCAAAATTTCATGCTTTCGTTATACAGATGTAGAATCTTCTTGGAAAGAATTGTTTCCTTCAAAAATTCAGAAGTTCAATAGCTGCCGCCACCTAAATACTAGAAAATGCTGGGCAGTTTTTTCCGCTGCAACCGGTGATGCAAATGATCCGGATGACTCAGAAGATAGTAAGAATCCTCCAGAAAATGAAAATGAATCC : GTAAATAATGAAATTTTAAGGGGTAATCTTGAAAGAATCGTCGGGCGGGATGACTCTGCATTTAGCGGAATAGACCTTGCAGCTCTGATAAGGAATAAATATGGAAGGTCCTATGATGTTCAATTGATTAAGAAG : GAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAG : CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG : GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAATTGTTTATATATGTCTCCATAAATGTTGTGTTTTTACTTTCTTGAG</gDNA_template>
            <first_frame> K  L  S  E  *  R  V  L  W  G  P  T  L  V  S  A  R  *  E  E  V  Q  S  I  L  *  R  K  E  A  A  K  F  H  A  F  V  I  Q  M  *  N  L  L  G  K  N  C  F  L  Q  K  F  R  S  S  I  A  A  A  T  *  I  L  E  N  A  G  Q  F  F  P  L  Q  P  V  M  Q  M  I  R  M  T  Q  K  I  V  R  I  L  Q  K  M  K  M  N  P :   *  I  M  K  F  *  G  V  I  L  K  E  S  S  G  G  M  T  L  H  L  A  E  *  T  L  Q  L  *  *  G  I  N  M  E  G  P  M  M  F  N  *  L  R  R :   N  S  W  G  K  I  F  L  R  *  T  L  C  G  N  T  G  S  S :   D  L  F  R  *  L  K  K  S  T  Y  *  G  *  M  M  W  Q  T  H  *  N  A  G  E  L  F  H  I  F  V  I  A  L  R  S  *  K  S  G  L  G  *  G  R :   Q  *  A  F  S  S  I  W  M  N  P  E  A  V  Q  R  N  G  F  T  S  R  P  E  H  C  S  S  S  M  L  I  V  S  N  T  *  V  D  I  *  Y  K  K  V  E  E  T  L  V  F  F  I  N  Y  Y  F  I  V  Q  T  Q  F  F  I  L  F  P  F  D  V  N  Y  T  L  L  Q  T  T  A  Y  L  L  S  C  N  C  L  Y  M  S  P  *  M  L  C  F  Y  F  L  E </first_frame>
            <second_frame>  N  F  Q  N  D  E  F  S  G  D  P  P  S  Y  L  L  V  R  R  R  S  R  A  Y  C  E  G  K  K  L  Q  N  F  M  L  S  L  Y  R  C  R  I  F  L  E  R  I  V  S  F  K  N  S  E  V  Q  *  L  P  P  P  K  Y  *  K  M  L  G  S  F  F  R  C  N  R  *  C  K  *  S  G  *  L  R  R  *  *  E  S  S  R  K  *  K  *  I   : R  K  *  *  N  F  K  G  *  S  *  K  N  R  R  A  G  *  L  C  I  *  R  N  R  P  C  S  S  D  K  E  *  I  W  K  V  L  *  C  S  I  D  *  E   : G  I  H  G  E  K  S  S  C  V  K  R  Y  V  E  I  Q  G  A   : A  I  F  S  V  N  *  R  R  V  P  T  E  A  R  *  C  G  K  H  I  E  M  L  G  S  C  F  T  Y  S  *  *  P  *  E  V  E  R  A  A  S  D  R  E   : G  S  E  H  F  H  R  Y  G  *  I  R  R  P  C  K  G  M  D  L  Q  V  D  Q  N  I  V  A  P  Q  C  *  *  L  A  I  H  R  *  I  Y  S  T  K  K  L  K  K  H  L  Y  S  L  L  I  T  I  S  L  C  R  H  N  F  L  Y  C  F  H  L  M  S  I  T  P  F  C  R  Q  Q  H  I  C  C  P  A  I  V  Y  I  C  L  H  K  C  C  V  F  T  F  L   </second_frame>
            <third_frame>   T  F  R  M  T  S  S  L  G  T  H  P  R  I  C  S  L  G  G  G  P  E  H  I  V  K  E  R  S  C  K  I  S  C  F  R  Y  T  D  V  E  S  S  W  K  E  L  F  P  S  K  I  Q  K  F  N  S  C  R  H  L  N  T  R  K  C  W  A  V  F  S  A  A  T  G  D  A  N  D  P  D  D  S  E  D  S  K  N  P  P  E  N  E  N  E  S  :  V  N  N  E  I  L  R  G  N  L  E  R  I  V  G  R  D  D  S  A  F  S  G  I  D  L  A  A  L  I  R  N  K  Y  G  R  S  Y  D  V  Q  L  I  K  K  :  E  F  M  G  K  N  L  L  A  L  N  V  M  W  K  Y  R  E  Q  :  R  S  F  P  L  T  E  E  E  Y  L  L  R  L  D  D  V  A  N  T  L  K  C  W  G  A  V  S  H  I  R  N  S  L  E  K  L  K  E  R  P  R  I  G  K  :  A  V  S  I  F  I  D  M  D  E  S  G  G  R  A  K  E  W  I  Y  K  *  T  R  T  L  *  L  L  N  V  D  S  *  Q  Y  I  G  R  Y  I  V  Q  K  S  *  R  N  T  C  I  L  Y  *  L  L  F  H  C  A  D  T  I  F  Y  I  V  S  I  *  C  Q  L  H  P  S  A  D  N  S  I  F  V  V  L  Q  L  F  I  Y  V  S  I  N  V  V  F  L  L  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36018" stop="35731"/>
                    <exon start="35628" stop="35494"/>
                    <exon start="34787" stop="34731"/>
                    <exon start="33437" stop="33303"/>
                    <exon start="32607" stop="32542"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFRMTSSLGTHPRICSLGGGPEHIVKERSCKISCFRYTDVESSWKELFPSKIQKFNSCRHLNTRKCWAVFSAATGDANDPDDSEDSKNPPENENESVNNEILRGNLERIVGRDDSAFSGIDLAALIRNKYGRSYDVQLIKKEFMGKNLLALNVMWKYREQRSFPLTEEEYLLRLDDVANTLKCWGAVSHIRNSLEKLKERPRIGKAVSIFIDMDESGGRAKEWIYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="33997" e_stop="33303"/>
            <exon e_start="32607" e_stop="32331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.981" e_score="0.900"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="33997" e_stop="33303" e_length="695"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.981">
            <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="32607" e_stop="32331" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33997" stop="33335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33324" stop="33303"/>
              <exon start="32607" stop="32342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33321" stop="33303"/>
              <exon start="32607" stop="32342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCGTCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAACTAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG : GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAATTGTTTATATATGTCTCCA</gDNA_template>
            <first_frame> L  S  K  P  C  P  Q  V  F  E  K  M  N  I  S  Y  N  T  E  R  G  V  S  *  R  R  L  L  G  R  I  L  N  S  *  R  *  Q  N  D  R  L  M  N  F  *  M  *  F  N  *  I  L  L  I  H  *  I  R  C  *  Y  *  F  S  Q  Y  I  M  L  T  T  A  L  L  Q  L  S  Q  I  V  G  L  T  W  S  V  I  F  D  I  M  *  Y  D  Q  V  K  Q  T  S  D  L  D  I  N  R  L  L  A  L  K  L  S  Y  I  T  C  P  D  *  L  K  E  T  T  S  M  F  E  *  P  F  P  P  F  F  L  E  N  D  F  K  I  L  W  D  L  L  K  H  K  I  T  N  C  N  C  *  N  V  S  L  K  F  S  L  E  F  *  K  I  T  V  I  S  V  *  C  A  F  M  I  L  F  *  S  D  L  F  R  *  L  K  K  S  T  Y  *  G  *  M  M  W  Q  T  H  *  N  A  G  E  L  F  H  I  F  V  I  A  L  R  S  *  K  S  G  L  G  *  G  R :   Q  *  A  F  S  S  I  W  M  N  P  E  A  V  Q  R  N  G  F  T  S  R  P  E  H  C  S  S  S  M  L  I  V  S  N  T  *  V  D  I  *  Y  K  K  V  E  E  T  L  V  F  F  I  N  Y  Y  F  I  V  Q  T  Q  F  F  I  L  F  P  F  D  V  N  Y  T  L  L  Q  T  T  A  Y  L  L  S  C  N  C  L  Y  M  S  P </first_frame>
            <second_frame>  F  L  N  L  V  P  K  C  L  R  R  *  I  Y  L  T  I  Q  K  E  E  *  V  K  G  D  Y  S  E  G  Y  *  T  V  N  V  N  K  M  T  D  *  *  T  S  K  C  S  L  I  R  Y  C  *  Y  T  R  *  D  A  N  I  N  F  L  N  T  L  C  *  L  L  L  S  C  S  Y  L  K  *  L  G  *  L  G  L  *  Y  S  T  L  C  N  M  I  K  *  N  K  H  L  T  *  T  *  T  V  F  W  R  *  S  *  V  I  L  L  A  L  I  S  *  K  K  Q  L  V  C  S  S  D  L  F  P  L  F  F  W  K  M  I  S  K  S  F  G  I  C  *  N  T  K  S  Q  I  V  T  V  R  M  C  R  *  N  S  V  *  N  F  E  K  L  L  *  F  P  S  N  V  P  S  *  F  C  F  K  A  I  F  S  V  N  *  R  R  V  P  T  E  A  R  *  C  G  K  H  I  E  M  L  G  S  C  F  T  Y  S  *  *  P  *  E  V  E  R  A  A  S  D  R  E   : G  S  E  H  F  H  R  Y  G  *  I  R  R  P  C  K  G  M  D  L  Q  V  D  Q  N  I  V  A  P  Q  C  *  *  L  A  I  H  R  *  I  Y  S  T  K  K  L  K  K  H  L  Y  S  L  L  I  T  I  S  L  C  R  H  N  F  L  Y  C  F  H  L  M  S  I  T  P  F  C  R  Q  Q  H  I  C  C  P  A  I  V  Y  I  C  L   </second_frame>
            <third_frame>   F  *  T  L  S  P  S  V  *  E  D  E  Y  I  L  Q  Y  R  K  R  S  K  L  K  E  I  T  R  K  D  I  E  Q  L  T  L  T  K  *  P  T  D  E  L  L  N  V  V  *  L  D  T  A  D  T  L  D  K  M  L  I  L  I  F  S  I  H  Y  A  D  Y  C  S  P  A  A  I  S  N  S  W  A  D  L  V  C  D  I  R  H  Y  V  I  *  S  S  K  T  N  I  *  L  R  H  K  P  S  F  G  V  K  V  E  L  Y  Y  L  P  *  L  V  E  R  N  N  *  Y  V  R  V  T  F  S  P  F  F  S  G  K  *  F  Q  N  P  L  G  S  V  K  T  Q  N  H  K  L  *  L  L  E  C  V  V  E  I  Q  F  R  I  L  K  N  Y  C  D  F  R  L  M  C  L  H  D  S  V  L  K  R  S  F  P  L  T  E  E  E  Y  L  L  R  L  D  D  V  A  N  T  L  K  C  W  G  A  V  S  H  I  R  N  S  L  E  K  L  K  E  R  P  R  I  G  K  :  A  V  S  I  F  I  D  M  D  E  S  G  G  R  A  K  E  W  I  Y  K  *  T  R  T  L  *  L  L  N  V  D  S  *  Q  Y  I  G  R  Y  I  V  Q  K  S  *  R  N  T  C  I  L  Y  *  L  L  F  H  C  A  D  T  I  F  Y  I  V  S  I  *  C  Q  L  H  P  S  A  D  N  S  I  F  V  V  L  Q  L  F  I  Y  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33527" stop="33303"/>
                    <exon start="32607" stop="32542"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLECVVEIQFRILKNYCDFRLMCLHDSVLKRSFPLTEEEYLLRLDDVANTLKCWGAVSHIRNSLEKLKERPRIGKAVSIFIDMDESGGRAKEWIYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="34789" e_stop="34731"/>
            <exon e_start="33437" e_stop="33303"/>
            <exon e_start="32607" e_stop="32314"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.902" acc_prob="0.678" e_score="0.966"/>
          <exon-intron don_prob="0.994" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="34789" e_stop="34731" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.902" acc_prob="0.678">
            <gDNA_intron_boundary i_start="34730" i_stop="33438" i_length="1293"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33437" e_stop="33303" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.981">
            <gDNA_intron_boundary i_start="33302" i_stop="32608" i_length="695"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="32607" e_stop="32314" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34789" stop="34731"/>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285004" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33437" stop="33303"/>
              <exon start="32607" stop="32331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33324" stop="33303"/>
              <exon start="32607" stop="32342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33321" stop="33303"/>
              <exon start="32607" stop="32342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAATTCATGGGGAAAAATCTTCTTGCGTTAAACGTTATGTGGAAATACAGGGAGCAG : CGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAG : GCAGTGAGCATTTTCATCGATATGGATGAATCCGGAGGCCGTGCAAAGGAATGGATTTACAAGTAGACCAGAACATTGTAGCTCCTCAATGTTGATAGTTAGCAATACATAGGTAGATATATAGTACAAAAAAGTTGAAGAAACACTTGTATTCTTTATTAATTACTATTTCATTGTGCAGACACAATTTTTTATATTGTTTCCATTTGATGTCAATTACACCCTTCTGCAGACAACAGCATATTTGTTGTCCTGCAATTGTTTATATATGTCTCCATAAATGTTGTGTTTTTA</gDNA_template>
            <first_frame> R  N  S  W  G  K  I  F  L  R  *  T  L  C  G  N  T  G  S  S :   D  L  F  R  *  L  K  K  S  T  Y  *  G  *  M  M  W  Q  T  H  *  N  A  G  E  L  F  H  I  F  V  I  A  L  R  S  *  K  S  G  L  G  *  G  R :   Q  *  A  F  S  S  I  W  M  N  P  E  A  V  Q  R  N  G  F  T  S  R  P  E  H  C  S  S  S  M  L  I  V  S  N  T  *  V  D  I  *  Y  K  K  V  E  E  T  L  V  F  F  I  N  Y  Y  F  I  V  Q  T  Q  F  F  I  L  F  P  F  D  V  N  Y  T  L  L  Q  T  T  A  Y  L  L  S  C  N  C  L  Y  M  S  P  *  M  L  C  F   </first_frame>
            <second_frame>  G  I  H  G  E  K  S  S  C  V  K  R  Y  V  E  I  Q  G  A   : A  I  F  S  V  N  *  R  R  V  P  T  E  A  R  *  C  G  K  H  I  E  M  L  G  S  C  F  T  Y  S  *  *  P  *  E  V  E  R  A  A  S  D  R  E   : G  S  E  H  F  H  R  Y  G  *  I  R  R  P  C  K  G  M  D  L  Q  V  D  Q  N  I  V  A  P  Q  C  *  *  L  A  I  H  R  *  I  Y  S  T  K  K  L  K  K  H  L  Y  S  L  L  I  T  I  S  L  C  R  H  N  F  L  Y  C  F  H  L  M  S  I  T  P  F  C  R  Q  Q  H  I  C  C  P  A  I  V  Y  I  C  L  H  K  C  C  V  F  </second_frame>
            <third_frame>   E  F  M  G  K  N  L  L  A  L  N  V  M  W  K  Y  R  E  Q  :  R  S  F  P  L  T  E  E  E  Y  L  L  R  L  D  D  V  A  N  T  L  K  C  W  G  A  V  S  H  I  R  N  S  L  E  K  L  K  E  R  P  R  I  G  K  :  A  V  S  I  F  I  D  M  D  E  S  G  G  R  A  K  E  W  I  Y  K  *  T  R  T  L  *  L  L  N  V  D  S  *  Q  Y  I  G  R  Y  I  V  Q  K  S  *  R  N  T  C  I  L  Y  *  L  L  F  H  C  A  D  T  I  F  Y  I  V  S  I  *  C  Q  L  H  P  S  A  D  N  S  I  F  V  V  L  Q  L  F  I  Y  V  S  I  N  V  V  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34787" stop="34731"/>
                    <exon start="33437" stop="33303"/>
                    <exon start="32607" stop="32542"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFMGKNLLALNVMWKYREQRSFPLTEEEYLLRLDDVANTLKCWGAVSHIRNSLEKLKERPRIGKAVSIFIDMDESGGRAKEWIYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="33997" e_stop="33220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="33997" e_stop="33220" e_length="778"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33997" stop="33220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33997" stop="33335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409070" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCTAAACCTTGTCCCCAAGTGTTTGAGAAGATGAATATATCTTACAATACAGAAAGAGGAGTAAGTTAAAGGAGATTACTCGGAAGGATATTGAACAGTTAACGTTAACAAAATGACCGACTGATGAACTTCTAAATGTAGTTTAATTAGATACTGCTGATACACTAGATAAGATGCTAATATTAATTTTCTCAATACATTATGCTGACTACTGCTCTCCTGCAGCTATCTCAAATAGTTGGGCTGACTTGGTCTGTGATATTCGACATTATGTAATATGATCAAGTAAAACAAACATCTGACTTAGACATAAACCGTCTTTTGGCGTTAAAGTTGAGTTATATTACTTGCCCTGATTAGTTGAAAGAAACAACTAGTATGTTCGAGTGACCTTTTCCCCCTTTTTTTCTGGAAAATGATTTCAAAATCCTTTGGGATCTGTTAAAACACAAAATCACAAATTGTAACTGTTAGAATGTGTCGTTGAAATTCAGTTTAGAATTTTGAAAAATTACTGTGATTTCCGTCTAATGTGCCTTCATGATTCTGTTTTAAAGCGATCTTTTCCGTTAACTGAAGAAGAGTACCTACTGAGGCTAGATGATGTGGCAAACACATTGAAATGCTGGGGAGCTGTTTCACATATTCGTAATAGCCTTGAGAAGTTGAAAGAGCGGCCTCGGATAGGGAAGGTAAATTAGTTCTAGCTGATACTTGATGCTATCTTCTACCTGATCTACTCAAAACTTTAGATTATATTCATCTCATTACCTTC</gDNA_template>
            <first_frame> L  S  K  P  C  P  Q  V  F  E  K  M  N  I  S  Y  N  T  E  R  G  V  S  *  R  R  L  L  G  R  I  L  N  S  *  R  *  Q  N  D  R  L  M  N  F  *  M  *  F  N  *  I  L  L  I  H  *  I  R  C  *  Y  *  F  S  Q  Y  I  M  L  T  T  A  L  L  Q  L  S  Q  I  V  G  L  T  W  S  V  I  F  D  I  M  *  Y  D  Q  V  K  Q  T  S  D  L  D  I  N  R  L  L  A  L  K  L  S  Y  I  T  C  P  D  *  L  K  E  T  T  S  M  F  E  *  P  F  P  P  F  F  L  E  N  D  F  K  I  L  W  D  L  L  K  H  K  I  T  N  C  N  C  *  N  V  S  L  K  F  S  L  E  F  *  K  I  T  V  I  S  V  *  C  A  F  M  I  L  F  *  S  D  L  F  R  *  L  K  K  S  T  Y  *  G  *  M  M  W  Q  T  H  *  N  A  G  E  L  F  H  I  F  V  I  A  L  R  S  *  K  S  G  L  G  *  G  R  *  I  S  S  S  *  Y  L  M  L  S  S  T  *  S  T  Q  N  F  R  L  Y  S  S  H  Y  L  </first_frame>
            <second_frame>  F  L  N  L  V  P  K  C  L  R  R  *  I  Y  L  T  I  Q  K  E  E  *  V  K  G  D  Y  S  E  G  Y  *  T  V  N  V  N  K  M  T  D  *  *  T  S  K  C  S  L  I  R  Y  C  *  Y  T  R  *  D  A  N  I  N  F  L  N  T  L  C  *  L  L  L  S  C  S  Y  L  K  *  L  G  *  L  G  L  *  Y  S  T  L  C  N  M  I  K  *  N  K  H  L  T  *  T  *  T  V  F  W  R  *  S  *  V  I  L  L  A  L  I  S  *  K  K  Q  L  V  C  S  S  D  L  F  P  L  F  F  W  K  M  I  S  K  S  F  G  I  C  *  N  T  K  S  Q  I  V  T  V  R  M  C  R  *  N  S  V  *  N  F  E  K  L  L  *  F  P  S  N  V  P  S  *  F  C  F  K  A  I  F  S  V  N  *  R  R  V  P  T  E  A  R  *  C  G  K  H  I  E  M  L  G  S  C  F  T  Y  S  *  *  P  *  E  V  E  R  A  A  S  D  R  E  G  K  L  V  L  A  D  T  *  C  Y  L  L  P  D  L  L  K  T  L  D  Y  I  H  L  I  T  F </second_frame>
            <third_frame>   F  *  T  L  S  P  S  V  *  E  D  E  Y  I  L  Q  Y  R  K  R  S  K  L  K  E  I  T  R  K  D  I  E  Q  L  T  L  T  K  *  P  T  D  E  L  L  N  V  V  *  L  D  T  A  D  T  L  D  K  M  L  I  L  I  F  S  I  H  Y  A  D  Y  C  S  P  A  A  I  S  N  S  W  A  D  L  V  C  D  I  R  H  Y  V  I  *  S  S  K  T  N  I  *  L  R  H  K  P  S  F  G  V  K  V  E  L  Y  Y  L  P  *  L  V  E  R  N  N  *  Y  V  R  V  T  F  S  P  F  F  S  G  K  *  F  Q  N  P  L  G  S  V  K  T  Q  N  H  K  L  *  L  L  E  C  V  V  E  I  Q  F  R  I  L  K  N  Y  C  D  F  R  L  M  C  L  H  D  S  V  L  K  R  S  F  P  L  T  E  E  E  Y  L  L  R  L  D  D  V  A  N  T  L  K  C  W  G  A  V  S  H  I  R  N  S  L  E  K  L  K  E  R  P  R  I  G  K  V  N  *  F  *  L  I  L  D  A  I  F  Y  L  I  Y  S  K  L  *  I  I  F  I  S  L  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33527" stop="33294"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLECVVEIQFRILKNYCDFRLMCLHDSVLKRSFPLTEEEYLLRLDDVANTLKCWGAVSHIRNSLEKLKERPRIGKVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="37655" e_stop="37126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37655" e_stop="37126" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37655" stop="37126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341922" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATTTTAGCACTTTTTTGAGTTGTTAGGTTGTAAATTTATAGTTTGTAAATATTGAAATGGAGTAGGTGGAGCTAGAAATTTAAAAGTTTTCTTTTTTATAGCTGTGGTGTACTTGCCAACTTGAGTGCTACCTCCCATCGACAACAGGTACATGTAGCTTCGTGTATTGTCTTTACTAGGATTTGAACCTGAAACCTCGCGAGTAGTAGGCCACACACCCTTGGGTACAGCTAGAAAATGAAGTTAATGGAGTTTGAATTTGACACCGAGTATATAACTTGTTTTATGAGTACATGGCTTGATTTACGAAATATTGGAAGTGCTCCTTGGAGAAGGTCCACGTTGATGCATTATGAAGTAGCTCTAGCTTCTTCTTCTTCTTCTTTTTTTCCTTTTTCAAATATAGCTATAATGAATTATGACAAGTTGATGTTGAATCAAATGATGTGCACTACCCTAGCTAAGAATAACTTGTAGCAGCTATAACATCCTACTTTATGAAAGAGCAAGAAAAGTTTGGACTATGGA</gDNA_template>
            <first_frame> G  F  *  H  F  F  E  L  L  G  C  K  F  I  V  C  K  Y  *  N  G  V  G  G  A  R  N  L  K  V  F  F  F  I  A  V  V  Y  L  P  T  *  V  L  P  P  I  D  N  R  Y  M  *  L  R  V  L  S  L  L  G  F  E  P  E  T  S  R  V  V  G  H  T  P  L  G  T  A  R  K  *  S  *  W  S  L  N  L  T  P  S  I  *  L  V  L  *  V  H  G  L  I  Y  E  I  L  E  V  L  L  G  E  G  P  R  *  C  I  M  K  *  L  *  L  L  L  L  L  L  F  F  L  F  Q  I  *  L  *  *  I  M  T  S  *  C  *  I  K  *  C  A  L  P  *  L  R  I  T  C  S  S  Y  N  I  L  L  Y  E  R  A  R  K  V  W  T  M   </first_frame>
            <second_frame>  D  F  S  T  F  L  S  C  *  V  V  N  L  *  F  V  N  I  E  M  E  *  V  E  L  E  I  *  K  F  S  F  L  *  L  W  C  T  C  Q  L  E  C  Y  L  P  S  T  T  G  T  C  S  F  V  Y  C  L  Y  *  D  L  N  L  K  P  R  E  *  *  A  T  H  P  W  V  Q  L  E  N  E  V  N  G  V  *  I  *  H  R  V  Y  N  L  F  Y  E  Y  M  A  *  F  T  K  Y  W  K  C  S  L  E  K  V  H  V  D  A  L  *  S  S  S  S  F  F  F  F  F  F  F  S  F  F  K  Y  S  Y  N  E  L  *  Q  V  D  V  E  S  N  D  V  H  Y  P  S  *  E  *  L  V  A  A  I  T  S  Y  F  M  K  E  Q  E  K  F  G  L  W  </second_frame>
            <third_frame>   I  L  A  L  F  *  V  V  R  L  *  I  Y  S  L  *  I  L  K  W  S  R  W  S  *  K  F  K  S  F  L  F  Y  S  C  G  V  L  A  N  L  S  A  T  S  H  R  Q  Q  V  H  V  A  S  C  I  V  F  T  R  I  *  T  *  N  L  A  S  S  R  P  H  T  L  G  Y  S  *  K  M  K  L  M  E  F  E  F  D  T  E  Y  I  T  C  F  M  S  T  W  L  D  L  R  N  I  G  S  A  P  W  R  R  S  T  L  M  H  Y  E  V  A  L  A  S  S  S  S  S  F  F  P  F  S  N  I  A  I  M  N  Y  D  K  L  M  L  N  Q  M  M  C  T  T  L  A  K  N  N  L  *  Q  L  *  H  P  T  L  *  K  S  K  K  S  L  D  Y  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37419" stop="37177"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMKLMEFEFDTEYITCFMSTWLDLRNIGSAPWRRSTLMHYEVALASSSSSFFPFSNIAIMNYDKLMLNQMMCTTLAKNNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="66821" PGL_stop="71747"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66821" e_stop="66935"/>
            <exon e_start="67096" e_stop="67277"/>
            <exon e_start="68092" e_stop="68199"/>
            <exon e_start="69164" e_stop="69253"/>
            <exon e_start="69379" e_stop="69463"/>
            <exon e_start="70447" e_stop="70541"/>
            <exon e_start="71297" e_stop="71689"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.764" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66821" e_stop="66935" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67096" e_stop="67277" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.933" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68092" e_stop="68199" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.993">
            <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69164" e_stop="69253" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69379" e_stop="69463" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70447" e_stop="70541" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.764" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="71297" e_stop="71689" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66821" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66821" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66823" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66835" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281413" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66839" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66839" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66840" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66840" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427675" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66840" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66840" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66841" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66841" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66842" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66843" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66844" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66845" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66848" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66848" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66850" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66850" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66853" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66854" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66854" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66855" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66855" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66855" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220941" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66860" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66879" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67149" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67206" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68097" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69220" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69383" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69445" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242390" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70471" stop="70541"/>
              <exon start="71297" stop="71540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70484" stop="70541"/>
              <exon start="71297" stop="71689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244701" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70490" stop="70541"/>
              <exon start="71297" stop="71689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242955" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCCTTGCACAATTGAAGTGTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG : ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT : GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG : GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA : GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG : GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT : GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAACATTCTAGTTAGTTTACAATCCTCTATTTGAGCATCCCAACGAATTTCTGCTGCCATCACACACTAGACAAATTATACAGAAGATGAATCAATTTCTTTGGGGGGACTCCTTGTGGAATTGCAATATTGTAGGAAAGATAAATGTTGGAACTGATATTATTATACAATCTTTAATTTCCTCT</gDNA_template>
            <first_frame> V  L  A  Q  L  K  C  S  S  S  H  Q  K  L  S  L  S  S  L  A  K  A  L  C  E  K  L  R  F  V  S  L  K  S  L  S  N  V   : D  L  *  V  *  W  K  C  F  G  C  D  G  W  E  K  L  F  R  Y  C  E  *  *  A  F  W  S  T  A  A  D  N  R  Y  *  F  P  E  D  L  *  N  T  *  Q  A  F  Y  W  T  F  W  L  G  Y  *  Y  S  N  T  :  A  S  T  P  H  V  P  S  Q  A  I  *  A  *  R  R  *  G  Y  E  A  R  D  L  C  Q  P  C  I  C  Y  A  L  *  E  K  :  V  W  S  I  L  V  P  T  C  N  C  W  I  R  R  R  *  Q  A  F  Y  L  H  N  G  L  Y  W  S  K  :  G  A  R  K  R  F  C  C  F  W  H  C  I  *  I  T  L  R  C  L  *  G  H  V  Q  A  R  H   : G  T  G  R  I  V  *  D  H  L  S  G  T  V  V  I  C  R  P  *  L  F  K  W  L  G  R  T  C  L  C  C  :  D  T  N  *  S  D  R  E  D  L  E  G  K  D  G  L  N  T  C  G  V  L  Y  L  F  T  I  A  F  H  W  D  D  I  S  L  V  L  M  N  T  Q  H  F  I  F  D  V  I  A  S  T  S  L  Q  D  C  Y  L  I  D  S  V  V  C  H  *  W  M  L  T  F  *  L  V  Y  N  P  L  F  E  H  P  N  E  F  L  L  P  S  H  T  R  Q  I  I  Q  K  M  N  Q  F  L  W  G  D  S  L  W  N  C  N  I  V  G  K  I  N  V  G  T  D  I  I  I  Q  S  L  I  S  S </first_frame>
            <second_frame>  S  L  H  N  *  S  V  L  Q  A  I  K  N  S  V  S  L  H  *  Q  K  H  F  A  K  N  F  D  S  F  L  *  N  H  S  P  M  S  :  I  F  E  Y  N  G  S  A  L  V  A  M  V  G  K  N  C  F  A  I  A  S  D  R  R  F  G  V  Q  L  Q  T  I  A  T  D  F  Q  R  I  Y  K  I  H  D  K  L  F  I  G  L  S  G  L  A  T  D  T  Q  T  L :   H  Q  R  L  M  F  R  H  K  L  Y  E  L  R  E  D  R  D  M  K  P  E  T  F  A  S  L  V  S  A  M  L  Y  E  K  R :   F  G  P  Y  L  C  Q  P  V  I  A  G  L  G  E  D  D  K  P  F  I  C  T  M  D  S  I  G  A  K :   E  L  A  K  D  F  V  V  S  G  T  A  S  E  S  L  Y  G  A  C  E  A  M  Y  K  P  D  M  :  G  P  E  E  L  F  E  T  I  S  Q  A  L  L  S  S  V  D  R  D  C  L  S  G  W  G  G  H  V  Y  V  V :   T  P  T  E  V  T  E  R  I  L  K  G  R  M  D  *  T  L  V  G  C  Y  T  C  S  L  L  H  F  T  G  M  T  F  H  L  F  *  *  I  L  N  I  S  Y  L  M  L  S  H  R  L  L  S  K  I  V  I  *  *  I  Q  L  S  V  T  N  G  C  *  H  S  S  *  F  T  I  L  Y  L  S  I  P  T  N  F  C  C  H  H  T  L  D  K  L  Y  R  R  *  I  N  F  F  G  G  T  P  C  G  I  A  I  L  *  E  R  *  M  L  E  L  I  L  L  Y  N  L  *  F  P   </second_frame>
            <third_frame>   P  C  T  I  E  V  F  F  K  P  S  K  T  Q  S  L  F  I  S  K  S  T  L  R  K  T  S  I  R  F  S  K  I  T  L  Q  C  R :   S  L  S  I  M  E  V  L  W  L  R  W  L  G  K  T  V  S  L  L  R  V  I  G  V  L  E  Y  S  C  R  Q  S  L  L  I  S  R  G  F  I  K  Y  M  T  S  F  L  L  D  F  L  A  W  L  L  I  L  K  H   : C  I  N  A  S  C  S  V  T  S  Y  M  S  L  E  K  I  G  I  *  S  P  R  P  L  P  A  L  Y  L  L  C  F  M  R  K   : G  L  V  H  T  C  A  N  L  *  L  L  D  *  E  K  M  T  S  L  L  F  A  Q  W  T  L  L  E  Q   : R  S  S  Q  K  I  L  L  F  L  A  L  H  L  N  H  F  T  V  L  V  R  P  C  T  S  P  T  W :   D  R  K  N  C  L  R  P  S  L  R  H  C  C  H  L  *  T  V  T  V  *  V  V  G  E  D  M  F  M  L   : *  H  Q  L  K  *  Q  R  G  S  *  R  E  G  W  T  E  H  L  W  G  A  I  L  V  H  Y  C  I  S  L  G  *  H  F  T  C  F  D  E  Y  S  T  F  H  I  *  C  Y  R  I  D  F  S  P  R  L  L  F  N  R  F  S  C  L  S  L  M  D  V  N  I  L  V  S  L  Q  S  S  I  *  A  S  Q  R  I  S  A  A  I  T  H  *  T  N  Y  T  E  D  E  S  I  S  L  G  G  L  L  V  E  L  Q  Y  C  R  K  D  K  C  W  N  *  Y  Y  Y  T  I  F  N  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66918" stop="66935"/>
                    <exon start="67096" stop="67277"/>
                    <exon start="68092" stop="68199"/>
                    <exon start="69164" stop="69253"/>
                    <exon start="69379" stop="69463"/>
                    <exon start="70447" stop="70541"/>
                    <exon start="71297" stop="71345"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHSPMSIFEYNGSALVAMVGKNCFAIASDRRFGVQLQTIATDFQRIYKIHDKLFIGLSGLATDTQTLHQRLMFRHKLYELREDRDMKPETFASLVSAMLYEKRFGPYLCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMYKPDMGPEELFETISQALLSSVDRDCLSGWGGHVYVVTPTEVTERILKGRMD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66821" e_stop="66935"/>
            <exon e_start="67096" e_stop="67277"/>
            <exon e_start="68092" e_stop="68199"/>
            <exon e_start="69164" e_stop="69253"/>
            <exon e_start="69379" e_stop="69463"/>
            <exon e_start="70447" e_stop="70541"/>
            <exon e_start="71297" e_stop="71507"/>
            <exon e_start="71704" e_stop="71747"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.764" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.820" e_score="1.000"/>
          <exon-only e_score="0.477"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66821" e_stop="66935" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66936" i_stop="67095" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67096" e_stop="67277" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.933" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67278" i_stop="68091" i_length="814"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68092" e_stop="68199" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.993">
            <gDNA_intron_boundary i_start="68200" i_stop="69163" i_length="964"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69164" e_stop="69253" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69254" i_stop="69378" i_length="125"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69379" e_stop="69463" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69464" i_stop="70446" i_length="983"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70447" e_stop="70541" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.764" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70542" i_stop="71296" i_length="755"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="71297" e_stop="71507" e_length="211"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.820">
            <gDNA_intron_boundary i_start="71508" i_stop="71703" i_length="196"/>
          </intron>
          <exon e_serial="8" e_score="0.477">
            <gDNA_exon_boundary e_start="71704" e_stop="71747" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66821" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66821" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66835" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281413" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66839" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66840" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427675" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66840" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66840" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66841" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66841" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66842" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66843" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66844" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66845" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66848" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66848" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66850" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66850" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66853" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66854" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66854" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66855" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66855" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66855" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220941" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66860" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66879" stop="66935"/>
              <exon start="67096" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67206" stop="67277"/>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68092" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68097" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68133" stop="68199"/>
              <exon start="69164" stop="69253"/>
              <exon start="69379" stop="69463"/>
              <exon start="70447" stop="70541"/>
              <exon start="71297" stop="71507"/>
              <exon start="71704" stop="71747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711561" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCCTTGCACAATTGAAGTGTTCTTCAAGCCATCAAAAACTCAGTCTCTCTTCATTAGCAAAAGCACTTTGCGAAAAACTTCGATTCGTTTCTCTAAAATCACTCTCCAATGTCG : ATCTTTGAGTATAATGGAAGTGCTTTGGTTGCGATGGTTGGGAAAAACTGTTTCGCTATTGCGAGTGATAGGCGTTTTGGAGTACAGCTGCAGACAATCGCTACTGATTTCCAGAGGATTTATAAAATACATGACAAGCTTTTTATTGGACTTTCTGGCTTGGCTACTGATACTCAAACACT : GCATCAACGCCTCATGTTCCGTCACAAGCTATATGAGCTTAGAGAAGATAGGGATATGAAGCCCGAGACCTTTGCCAGCCTTGTATCTGCTATGCTTTATGAGAAAAG : GTTTGGTCCATACTTGTGCCAACCTGTAATTGCTGGATTAGGAGAAGATGACAAGCCTTTTATTTGCACAATGGACTCTATTGGAGCAAA : GGAGCTCGCAAAAGATTTTGTTGTTTCTGGCACTGCATCTGAATCACTTTACGGTGCTTGTGAGGCCATGTACAAGCCCGACATG : GGACCGGAAGAATTGTTTGAGACCATCTCTCAGGCACTGTTGTCATCTGTAGACCGTGACTGTTTAAGTGGTTGGGGAGGACATGTTTATGTTGT : GACACCAACTGAAGTGACAGAGAGGATCTTGAAGGGAAGGATGGACTGAACACTTGTGGGGTGCTATACTTGTTCACTATTGCATTTCACTGGGATGACATTTCACTTGTTTTGATGAATACTCAACATTTCATATTTGATGTTATCGCATCGACTTCTCTCCAAGATTGTTATTTAATAGATTCAGTTGTCTGTCACTAATGGATGTTAA : GCAGAAGAACGCCCAGTTGGGGAAGGTCTTGTACGCACTCTACC</gDNA_template>
            <first_frame> V  L  A  Q  L  K  C  S  S  S  H  Q  K  L  S  L  S  S  L  A  K  A  L  C  E  K  L  R  F  V  S  L  K  S  L  S  N  V   : D  L  *  V  *  W  K  C  F  G  C  D  G  W  E  K  L  F  R  Y  C  E  *  *  A  F  W  S  T  A  A  D  N  R  Y  *  F  P  E  D  L  *  N  T  *  Q  A  F  Y  W  T  F  W  L  G  Y  *  Y  S  N  T  :  A  S  T  P  H  V  P  S  Q  A  I  *  A  *  R  R  *  G  Y  E  A  R  D  L  C  Q  P  C  I  C  Y  A  L  *  E  K  :  V  W  S  I  L  V  P  T  C  N  C  W  I  R  R  R  *  Q  A  F  Y  L  H  N  G  L  Y  W  S  K  :  G  A  R  K  R  F  C  C  F  W  H  C  I  *  I  T  L  R  C  L  *  G  H  V  Q  A  R  H   : G  T  G  R  I  V  *  D  H  L  S  G  T  V  V  I  C  R  P  *  L  F  K  W  L  G  R  T  C  L  C  C  :  D  T  N  *  S  D  R  E  D  L  E  G  K  D  G  L  N  T  C  G  V  L  Y  L  F  T  I  A  F  H  W  D  D  I  S  L  V  L  M  N  T  Q  H  F  I  F  D  V  I  A  S  T  S  L  Q  D  C  Y  L  I  D  S  V  V  C  H  *  W  M  L   : S  R  R  T  P  S  W  G  R  S  C  T  H  S  T </first_frame>
            <second_frame>  S  L  H  N  *  S  V  L  Q  A  I  K  N  S  V  S  L  H  *  Q  K  H  F  A  K  N  F  D  S  F  L  *  N  H  S  P  M  S  :  I  F  E  Y  N  G  S  A  L  V  A  M  V  G  K  N  C  F  A  I  A  S  D  R  R  F  G  V  Q  L  Q  T  I  A  T  D  F  Q  R  I  Y  K  I  H  D  K  L  F  I  G  L  S  G  L  A  T  D  T  Q  T  L :   H  Q  R  L  M  F  R  H  K  L  Y  E  L  R  E  D  R  D  M  K  P  E  T  F  A  S  L  V  S  A  M  L  Y  E  K  R :   F  G  P  Y  L  C  Q  P  V  I  A  G  L  G  E  D  D  K  P  F  I  C  T  M  D  S  I  G  A  K :   E  L  A  K  D  F  V  V  S  G  T  A  S  E  S  L  Y  G  A  C  E  A  M  Y  K  P  D  M  :  G  P  E  E  L  F  E  T  I  S  Q  A  L  L  S  S  V  D  R  D  C  L  S  G  W  G  G  H  V  Y  V  V :   T  P  T  E  V  T  E  R  I  L  K  G  R  M  D  *  T  L  V  G  C  Y  T  C  S  L  L  H  F  T  G  M  T  F  H  L  F  *  *  I  L  N  I  S  Y  L  M  L  S  H  R  L  L  S  K  I  V  I  *  *  I  Q  L  S  V  T  N  G  C  *  :  A  E  E  R  P  V  G  E  G  L  V  R  T  L   </second_frame>
            <third_frame>   P  C  T  I  E  V  F  F  K  P  S  K  T  Q  S  L  F  I  S  K  S  T  L  R  K  T  S  I  R  F  S  K  I  T  L  Q  C  R :   S  L  S  I  M  E  V  L  W  L  R  W  L  G  K  T  V  S  L  L  R  V  I  G  V  L  E  Y  S  C  R  Q  S  L  L  I  S  R  G  F  I  K  Y  M  T  S  F  L  L  D  F  L  A  W  L  L  I  L  K  H   : C  I  N  A  S  C  S  V  T  S  Y  M  S  L  E  K  I  G  I  *  S  P  R  P  L  P  A  L  Y  L  L  C  F  M  R  K   : G  L  V  H  T  C  A  N  L  *  L  L  D  *  E  K  M  T  S  L  L  F  A  Q  W  T  L  L  E  Q   : R  S  S  Q  K  I  L  L  F  L  A  L  H  L  N  H  F  T  V  L  V  R  P  C  T  S  P  T  W :   D  R  K  N  C  L  R  P  S  L  R  H  C  C  H  L  *  T  V  T  V  *  V  V  G  E  D  M  F  M  L   : *  H  Q  L  K  *  Q  R  G  S  *  R  E  G  W  T  E  H  L  W  G  A  I  L  V  H  Y  C  I  S  L  G  *  H  F  T  C  F  D  E  Y  S  T  F  H  I  *  C  Y  R  I  D  F  S  P  R  L  L  F  N  R  F  S  C  L  S  L  M  D  V  K :   Q  K  N  A  Q  L  G  K  V  L  Y  A  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66918" stop="66935"/>
                    <exon start="67096" stop="67277"/>
                    <exon start="68092" stop="68199"/>
                    <exon start="69164" stop="69253"/>
                    <exon start="69379" stop="69463"/>
                    <exon start="70447" stop="70541"/>
                    <exon start="71297" stop="71345"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHSPMSIFEYNGSALVAMVGKNCFAIASDRRFGVQLQTIATDFQRIYKIHDKLFIGLSGLATDTQTLHQRLMFRHKLYELREDRDMKPETFASLVSAMLYEKRFGPYLCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMYKPDMGPEELFETISQALLSSVDRDCLSGWGGHVYVVTPTEVTERILKGRMD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="72066" PGL_stop="72595"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72066" e_stop="72466"/>
            <exon e_start="72591" e_stop="72595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.836" acc_prob="0.862" e_score="0.915"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="72066" e_stop="72466" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="0.836" acc_prob="0.862">
            <gDNA_intron_boundary i_start="72467" i_stop="72590" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="0.600">
            <gDNA_exon_boundary e_start="72591" e_stop="72595" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72066" stop="72466"/>
              <exon start="72591" stop="72595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAGATAAACAGGTTAGTACTATTAAGTAGAAGAATTACAACACATCACCCCAAAGAAAAAAACCTGGGGCATATCTTTGGTTTTGATCCCAGTATGAAGCTCAATGAAGGGGAAAAAAGAGCTCATGTCGATTTAAGTTGAAGGAGCAATATCAAAGGAATGAAGAATCTGTTCCAACGTATTTCTTCTATCAGGATCAATAGGACCTTCTGACCCATCAGAGTGAGCGATGTTTAACAGATAGAGCTTGCCAGACGCAACAAATGCAGCAGAAAGTATCCTCTTCAACCCTCCCCTCGTGCTATCGACCTTGTATTCAAACTCATATACTTGAAGACCTCCTTCACCCGTTCTCTCCGATACTGAAACCACTTCAGCCTCCTTTGTACTTTCCTAAAA : GATTG</gDNA_template>
            <first_frame> *  R  *  T  G  *  Y  Y  *  V  E  E  L  Q  H  I  T  P  K  K  K  T  W  G  I  S  L  V  L  I  P  V  *  S  S  M  K  G  K  K  E  L  M  S  I  *  V  E  G  A  I  S  K  E  *  R  I  C  S  N  V  F  L  L  S  G  S  I  G  P  S  D  P  S  E  *  A  M  F  N  R  *  S  L  P  D  A  T  N  A  A  E  S  I  L  F  N  P  P  L  V  L  S  T  L  Y  S  N  S  Y  T  *  R  P  P  S  P  V  L  S  D  T  E  T  T  S  A  S  F  V  L  S  *  K :   I  </first_frame>
            <second_frame>  K  D  K  Q  V  S  T  I  K  *  K  N  Y  N  T  S  P  Q  R  K  K  P  G  A  Y  L  W  F  *  S  Q  Y  E  A  Q  *  R  G  K  K  S  S  C  R  F  K  L  K  E  Q  Y  Q  R  N  E  E  S  V  P  T  Y  F  F  Y  Q  D  Q  *  D  L  L  T  H  Q  S  E  R  C  L  T  D  R  A  C  Q  T  Q  Q  M  Q  Q  K  V  S  S  S  T  L  P  S  C  Y  R  P  C  I  Q  T  H  I  L  E  D  L  L  H  P  F  S  P  I  L  K  P  L  Q  P  P  L  Y  F  P  K   : R  L </second_frame>
            <third_frame>   K  I  N  R  L  V  L  L  S  R  R  I  T  T  H  H  P  K  E  K  N  L  G  H  I  F  G  F  D  P  S  M  K  L  N  E  G  E  K  R  A  H  V  D  L  S  *  R  S  N  I  K  G  M  K  N  L  F  Q  R  I  S  S  I  R  I  N  R  T  F  *  P  I  R  V  S  D  V  *  Q  I  E  L  A  R  R  N  K  C  S  R  K  Y  P  L  Q  P  S  P  R  A  I  D  L  V  F  K  L  I  Y  L  K  T  S  F  T  R  S  L  R  Y  *  N  H  F  S  L  L  C  T  F  L  K  :  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72271" stop="72466"/>
                    <exon start="72591" stop="72595"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLLTHQSERCLTDRACQTQQMQQKVSSSTLPSCYRPCIQTHILEDLLHPFSPILKPLQPPLYFPKRL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="74274" PGL_stop="72259"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74274" e_stop="73909"/>
            <exon e_start="73254" e_stop="73099"/>
            <exon e_start="72460" e_stop="72259"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.885"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.949"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.885">
            <gDNA_exon_boundary e_start="74274" e_stop="73909" e_length="366"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73908" i_stop="73255" i_length="654"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="73254" e_stop="73099" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73098" i_stop="72461" i_length="638"/>
          </intron>
          <exon e_serial="3" e_score="0.944">
            <gDNA_exon_boundary e_start="72460" e_stop="72259" e_length="202"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74274" stop="73909"/>
              <exon start="73254" stop="73099"/>
              <exon start="72460" stop="72259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74274" stop="73909"/>
              <exon start="73254" stop="73099"/>
              <exon start="72460" stop="72281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAAGATGACCCTTCCTTTCATCTCCTCTCAATTACCGTAACACACAAATGTCCGCCATTAGCTCACTGGTTTGCTCAAATATCTTTCGAAATGGCTTCTTTCAGTGTCTCCCGAGCATATCATCCATTATCACTCCATTGCAGTTGAAAACGAGAAGCAGATCCTTAGTTGTGTTATCGAATGAGGATGAGTTGGTTCCAACTTATTCAACGAGAAGACGAGCCCTGAACGTATCAATCTTGACGGTGTTGCTTTCGATACCTTTCTCAAGCTTCGCTATTGCCATTGGTGAGGTGTTAGAGCTTGAAAGATATACGGATTCAGCTGAAGGTTTCACTCTCCTCAAACCTTCTTCTTGGAGCAAG : GTTGATAAAGCTGGGGCAACTGCCCTGTTTCAGGATGCAAACAAGGGATCCAACAATGTAGGCGTCGTGGTTATACCTGTAAAAATAACAACCCTCAGCCAATTCGGAACTCCACAATTCGTGGCAGATAAGCTAATTCTTGCTGAAAAGCGCAAG : GAAAGTACAAAGGAGGCTGAAGTGGTTTCAGTATCGGAGAGAACGGGTGAAGGAGGTCTTCAAGTATATGAGTTTGAATACAAGGTCGATAGCACGAGGGGAGGGTTGAAGAGGATACTTTCTGCTGCATTTGTTGCGTCTGGCAAGCTCTATCTGTTAAACATCGCTCACTCTGATGGGTCAGAAGGTCCTATTGATCCTG</gDNA_template>
            <first_frame> I  R  *  P  F  L  S  S  P  L  N  Y  R  N  T  Q  M  S  A  I  S  S  L  V  C  S  N  I  F  R  N  G  F  F  Q  C  L  P  S  I  S  S  I  I  T  P  L  Q  L  K  T  R  S  R  S  L  V  V  L  S  N  E  D  E  L  V  P  T  Y  S  T  R  R  R  A  L  N  V  S  I  L  T  V  L  L  S  I  P  F  S  S  F  A  I  A  I  G  E  V  L  E  L  E  R  Y  T  D  S  A  E  G  F  T  L  L  K  P  S  S  W  S  K  :  V  D  K  A  G  A  T  A  L  F  Q  D  A  N  K  G  S  N  N  V  G  V  V  V  I  P  V  K  I  T  T  L  S  Q  F  G  T  P  Q  F  V  A  D  K  L  I  L  A  E  K  R  K  :  E  S  T  K  E  A  E  V  V  S  V  S  E  R  T  G  E  G  G  L  Q  V  Y  E  F  E  Y  K  V  D  S  T  R  G  G  L  K  R  I  L  S  A  A  F  V  A  S  G  K  L  Y  L  L  N  I  A  H  S  D  G  S  E  G  P  I  D  P  </first_frame>
            <second_frame>  *  D  D  P  S  F  H  L  L  S  I  T  V  T  H  K  C  P  P  L  A  H  W  F  A  Q  I  S  F  E  M  A  S  F  S  V  S  R  A  Y  H  P  L  S  L  H  C  S  *  K  R  E  A  D  P  *  L  C  Y  R  M  R  M  S  W  F  Q  L  I  Q  R  E  D  E  P  *  T  Y  Q  S  *  R  C  C  F  R  Y  L  S  Q  A  S  L  L  P  L  V  R  C  *  S  L  K  D  I  R  I  Q  L  K  V  S  L  S  S  N  L  L  L  G  A  R :   L  I  K  L  G  Q  L  P  C  F  R  M  Q  T  R  D  P  T  M  *  A  S  W  L  Y  L  *  K  *  Q  P  S  A  N  S  E  L  H  N  S  W  Q  I  S  *  F  L  L  K  S  A  R :   K  V  Q  R  R  L  K  W  F  Q  Y  R  R  E  R  V  K  E  V  F  K  Y  M  S  L  N  T  R  S  I  A  R  G  E  G  *  R  G  Y  F  L  L  H  L  L  R  L  A  S  S  I  C  *  T  S  L  T  L  M  G  Q  K  V  L  L  I  L </second_frame>
            <third_frame>   K  M  T  L  P  F  I  S  S  Q  L  P  *  H  T  N  V  R  H  *  L  T  G  L  L  K  Y  L  S  K  W  L  L  S  V  S  P  E  H  I  I  H  Y  H  S  I  A  V  E  N  E  K  Q  I  L  S  C  V  I  E  *  G  *  V  G  S  N  L  F  N  E  K  T  S  P  E  R  I  N  L  D  G  V  A  F  D  T  F  L  K  L  R  Y  C  H  W  *  G  V  R  A  *  K  I  Y  G  F  S  *  R  F  H  S  P  Q  T  F  F  L  E  Q   : G  *  *  S  W  G  N  C  P  V  S  G  C  K  Q  G  I  Q  Q  C  R  R  R  G  Y  T  C  K  N  N  N  P  Q  P  I  R  N  S  T  I  R  G  R  *  A  N  S  C  *  K  A  Q   : G  K  Y  K  G  G  *  S  G  F  S  I  G  E  N  G  *  R  R  S  S  S  I  *  V  *  I  Q  G  R  *  H  E  G  R  V  E  E  D  T  F  C  C  I  C  C  V  W  Q  A  L  S  V  K  H  R  S  L  *  W  V  R  R  S  Y  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74265" stop="73909"/>
                    <exon start="73254" stop="73099"/>
                    <exon start="72460" stop="72260"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFLSSPLNYRNTQMSAISSLVCSNIFRNGFFQCLPSISSIITPLQLKTRSRSLVVLSNEDELVPTYSTRRRALNVSILTVLLSIPFSSFAIAIGEVLELERYTDSAEGFTLLKPSSWSKVDKAGATALFQDANKGSNNVGVVVIPVKITTLSQFGTPQFVADKLILAEKRKESTKEAEVVSVSERTGEGGLQVYEFEYKVDSTRGGLKRILSAAFVASGKLYLLNIAHSDGSEGPIDP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="75090" PGL_stop="82870"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77720" e_stop="77788"/>
            <exon e_start="78367" e_stop="78423"/>
            <exon e_start="79623" e_stop="79783"/>
            <exon e_start="79859" e_stop="79988"/>
            <exon e_start="80836" e_stop="80997"/>
            <exon e_start="81734" e_stop="81861"/>
            <exon e_start="82244" e_stop="82343"/>
            <exon e_start="82469" e_stop="82870"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.176" acc_prob="0.890" e_score="0.986"/>
          <exon-intron don_prob="0.880" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.857" e_score="0.992"/>
          <exon-intron don_prob="0.596" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="77720" e_stop="77788" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.176" acc_prob="0.890">
            <gDNA_intron_boundary i_start="77789" i_stop="78366" i_length="578"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78367" e_stop="78423" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.880" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78424" i_stop="79622" i_length="1199"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79623" e_stop="79783" e_length="161"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.997">
            <gDNA_intron_boundary i_start="79784" i_stop="79858" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79859" e_stop="79988" e_length="130"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.986">
            <gDNA_intron_boundary i_start="79989" i_stop="80835" i_length="847"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80836" e_stop="80997" e_length="162"/>
          </exon>
          <intron i_serial="5" don_prob="0.903" acc_prob="0.997">
            <gDNA_intron_boundary i_start="80998" i_stop="81733" i_length="736"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="81734" e_stop="81861" e_length="128"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.857">
            <gDNA_intron_boundary i_start="81862" i_stop="82243" i_length="382"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82244" e_stop="82343" e_length="100"/>
          </exon>
          <intron i_serial="7" don_prob="0.596" acc_prob="0.981">
            <gDNA_intron_boundary i_start="82344" i_stop="82468" i_length="125"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="82469" e_stop="82870" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77720" stop="77788"/>
              <exon start="78367" stop="78423"/>
              <exon start="79623" stop="79783"/>
              <exon start="79859" stop="79988"/>
              <exon start="80836" stop="80997"/>
              <exon start="81734" stop="81861"/>
              <exon start="82244" stop="82279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81770" stop="81861"/>
              <exon start="82244" stop="82328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81770" stop="81861"/>
              <exon start="82244" stop="82328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81792" stop="81861"/>
              <exon start="82244" stop="82328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82249" stop="82343"/>
              <exon start="82469" stop="82870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82534" stop="82870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82541" stop="82870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTACCAAGCTTGTTGTATTGACGGGAGCTGGCATGAGCACAGAGAGTGGAATTCCGGATTACAGAAG : CCCAAACGGAGCTTATAGTACGGGTTTCAAACCAATTACCCATCAGGTGATTTGAAG : GAGTTTCTACGATCAATCAAGGCTCGAAGGCGTTATTGGGCACGGAGCTATGCTGGCTGGCGACGTTTCACTGCTGCTCAACCTAGTACAGGTCATATAGCTCTATCATCTCTTGAGAAAGCAGGCCATATAAGTTTTATGATTACACAGAATGTGGACAG : GCTGCATCACCGAGCTGGAAGCAATCCTCTTGAATTGCATGGGACTGTCTACATTGTTGCCTGTACAAATTGTGGTTTTTCTCTACCTCGAGATCTATTTCAAGATCAAGTGAAGGCTCATAATCCCAAG : TGGGCAGAAGCTATTGAAAATTTGGACTATGACAGTCGATCAGACAAGAGTTTTGGAATGAAACAAAGGCCTGATGGGGATATTGAGATTGATGAGAAGTTCTGGGAAGAGGATTTCTACATTCCTGAATGTCAGAGCTGCCAAGGAGTTCTGAAACCTGAT : GTTGTCTTCTTTGGGGATAATGTCCCCAAATCTAGGGCAGATGCTGCTATGGAAGCTGCAAAGGGATGTGATGCCTTCCTTGTACTTGGTTCATCTTTGATGACCATGTCCGCCTTCCGGCTTATCAA : AGCTGCACGTGAGGCAGGTGCTGCTACTGCAATTATAAATATTGGTGCTACACGAGCTGACGATATTGTACCTTTGAAAATTAGTGCTCGAGTTGGAGAG : ATACTTCCAAGATTGCTCAATGTTGGATCATTAAGTATCCCTGCTCCCTAGTTCCTGATTCAGAGAACTGTTAATTAATAGCATCCCAGATTCTTTTTCATCAGTTGCTGCAAATGGATTGTACACTTGGTCGGAACGTGCTAGTTCGCCCTGCATCTCACGTGTGGTAAATTCACTAAATTTATCTCGACGTTGTTTGTAATTCTTAAAAATGAACTTCTCAACTACCACACACACTATTTATGTGCGCGTTTGTATTGTCACACAACTCGACTACTTTGAATTTCTGATTTAGTGAGTTGAAGCTGAAATGGTGCGAAAATACACAGAATATTGCTTGGAAATGATGAATTTTAGTATGGCCTTTTGCTTAAAGATTTACATTATGCTTGCATAAAAAAA</gDNA_template>
            <first_frame> *  Y  Q  A  C  C  I  D  G  S  W  H  E  H  R  E  W  N  S  G  L  Q  K  :  P  K  R  S  L  *  Y  G  F  Q  T  N  Y  P  S  G  D  L  K  :  E  F  L  R  S  I  K  A  R  R  R  Y  W  A  R  S  Y  A  G  W  R  R  F  T  A  A  Q  P  S  T  G  H  I  A  L  S  S  L  E  K  A  G  H  I  S  F  M  I  T  Q  N  V  D  R :   L  H  H  R  A  G  S  N  P  L  E  L  H  G  T  V  Y  I  V  A  C  T  N  C  G  F  S  L  P  R  D  L  F  Q  D  Q  V  K  A  H  N  P  K  :  W  A  E  A  I  E  N  L  D  Y  D  S  R  S  D  K  S  F  G  M  K  Q  R  P  D  G  D  I  E  I  D  E  K  F  W  E  E  D  F  Y  I  P  E  C  Q  S  C  Q  G  V  L  K  P  D  :  V  V  F  F  G  D  N  V  P  K  S  R  A  D  A  A  M  E  A  A  K  G  C  D  A  F  L  V  L  G  S  S  L  M  T  M  S  A  F  R  L  I  K :   A  A  R  E  A  G  A  A  T  A  I  I  N  I  G  A  T  R  A  D  D  I  V  P  L  K  I  S  A  R  V  G  E  :  I  L  P  R  L  L  N  V  G  S  L  S  I  P  A  P  *  F  L  I  Q  R  T  V  N  *  *  H  P  R  F  F  F  I  S  C  C  K  W  I  V  H  L  V  G  T  C  *  F  A  L  H  L  T  C  G  K  F  T  K  F  I  S  T  L  F  V  I  L  K  N  E  L  L  N  Y  H  T  H  Y  L  C  A  R  L  Y  C  H  T  T  R  L  L  *  I  S  D  L  V  S  *  S  *  N  G  A  K  I  H  R  I  L  L  G  N  D  E  F  *  Y  G  L  L  L  K  D  L  H  Y  A  C  I  K  K </first_frame>
            <second_frame>  S  T  K  L  V  V  L  T  G  A  G  M  S  T  E  S  G  I  P  D  Y  R  S :   P  N  G  A  Y  S  T  G  F  K  P  I  T  H  Q  V  I  *  R :   S  F  Y  D  Q  S  R  L  E  G  V  I  G  H  G  A  M  L  A  G  D  V  S  L  L  L  N  L  V  Q  V  I  *  L  Y  H  L  L  R  K  Q  A  I  *  V  L  *  L  H  R  M  W  T   : G  C  I  T  E  L  E  A  I  L  L  N  C  M  G  L  S  T  L  L  P  V  Q  I  V  V  F  L  Y  L  E  I  Y  F  K  I  K  *  R  L  I  I  P  S :   G  Q  K  L  L  K  I  W  T  M  T  V  D  Q  T  R  V  L  E  *  N  K  G  L  M  G  I  L  R  L  M  R  S  S  G  K  R  I  S  T  F  L  N  V  R  A  A  K  E  F  *  N  L  M :   L  S  S  L  G  I  M  S  P  N  L  G  Q  M  L  L  W  K  L  Q  R  D  V  M  P  S  L  Y  L  V  H  L  *  *  P  C  P  P  S  G  L  S   : K  L  H  V  R  Q  V  L  L  L  Q  L  *  I  L  V  L  H  E  L  T  I  L  Y  L  *  K  L  V  L  E  L  E  R :   Y  F  Q  D  C  S  M  L  D  H  *  V  S  L  L  P  S  S  *  F  R  E  L  L  I  N  S  I  P  D  S  F  S  S  V  A  A  N  G  L  Y  T  W  S  E  R  A  S  S  P  C  I  S  R  V  V  N  S  L  N  L  S  R  R  C  L  *  F  L  K  M  N  F  S  T  T  T  H  T  I  Y  V  R  V  C  I  V  T  Q  L  D  Y  F  E  F  L  I  *  *  V  E  A  E  M  V  R  K  Y  T  E  Y  C  L  E  M  M  N  F  S  M  A  F  C  L  K  I  Y  I  M  L  A  *  K   </second_frame>
            <third_frame>   V  P  S  L  L  Y  *  R  E  L  A  *  A  Q  R  V  E  F  R  I  T  E   : A  Q  T  E  L  I  V  R  V  S  N  Q  L  P  I  R  *  F  E   : G  V  S  T  I  N  Q  G  S  K  A  L  L  G  T  E  L  C  W  L  A  T  F  H  C  C  S  T  *  Y  R  S  Y  S  S  I  I  S  *  E  S  R  P  Y  K  F  Y  D  Y  T  E  C  G  Q  :  A  A  S  P  S  W  K  Q  S  S  *  I  A  W  D  C  L  H  C  C  L  Y  K  L  W  F  F  S  T  S  R  S  I  S  R  S  S  E  G  S  *  S  Q   : V  G  R  S  Y  *  K  F  G  L  *  Q  S  I  R  Q  E  F  W  N  E  T  K  A  *  W  G  Y  *  D  *  *  E  V  L  G  R  G  F  L  H  S  *  M  S  E  L  P  R  S  S  E  T  *   : C  C  L  L  W  G  *  C  P  Q  I  *  G  R  C  C  Y  G  S  C  K  G  M  *  C  L  P  C  T  W  F  I  F  D  D  H  V  R  L  P  A  Y  Q  :  S  C  T  *  G  R  C  C  Y  C  N  Y  K  Y  W  C  Y  T  S  *  R  Y  C  T  F  E  N  *  C  S  S  W  R   : D  T  S  K  I  A  Q  C  W  I  I  K  Y  P  C  S  L  V  P  D  S  E  N  C  *  L  I  A  S  Q  I  L  F  H  Q  L  L  Q  M  D  C  T  L  G  R  N  V  L  V  R  P  A  S  H  V  W  *  I  H  *  I  Y  L  D  V  V  C  N  S  *  K  *  T  S  Q  L  P  H  T  L  F  M  C  A  F  V  L  S  H  N  S  T  T  L  N  F  *  F  S  E  L  K  L  K  W  C  E  N  T  Q  N  I  A  W  K  *  *  I  L  V  W  P  F  A  *  R  F  T  L  C  L  H  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78385" stop="78423"/>
                    <exon start="79623" stop="79783"/>
                    <exon start="79859" stop="79988"/>
                    <exon start="80836" stop="80997"/>
                    <exon start="81734" stop="81861"/>
                    <exon start="82244" stop="82343"/>
                    <exon start="82469" stop="82519"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YGFQTNYPSGDLKEFLRSIKARRRYWARSYAGWRRFTAAQPSTGHIALSSLEKAGHISFMITQNVDRLHHRAGSNPLELHGTVYIVACTNCGFSLPRDLFQDQVKAHNPKWAEAIENLDYDSRSDKSFGMKQRPDGDIEIDEKFWEEDFYIPECQSCQGVLKPDVVFFGDNVPKSRADAAMEAAKGCDAFLVLGSSLMTMSAFRLIKAAREAGAATAIINIGATRADDIVPLKISARVGEILPRLLNVGSLSIPAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75090" e_stop="75247"/>
            <exon e_start="76622" e_stop="76664"/>
            <exon e_start="76757" e_stop="76991"/>
            <exon e_start="77723" e_stop="77788"/>
            <exon e_start="78367" e_stop="78412"/>
            <exon e_start="79623" e_stop="79782"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.176" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75090" e_stop="75247" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75248" i_stop="76621" i_length="1374"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76622" e_stop="76664" e_length="43"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="76665" i_stop="76756" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76757" e_stop="76991" e_length="235"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76992" i_stop="77722" i_length="731"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77723" e_stop="77788" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.176" acc_prob="0.890">
            <gDNA_intron_boundary i_start="77789" i_stop="78366" i_length="578"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78367" e_stop="78412" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.942" acc_prob="0.998">
            <gDNA_intron_boundary i_start="78413" i_stop="79622" i_length="1210"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79623" e_stop="79782" e_length="160"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75090" stop="75247"/>
              <exon start="76622" stop="76664"/>
              <exon start="76757" stop="76991"/>
              <exon start="77723" stop="77788"/>
              <exon start="78367" stop="78412"/>
              <exon start="79623" stop="79676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75105" stop="75247"/>
              <exon start="76622" stop="76664"/>
              <exon start="76757" stop="76991"/>
              <exon start="77723" stop="77788"/>
              <exon start="78367" stop="78412"/>
              <exon start="79623" stop="79680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75105" stop="75247"/>
              <exon start="76622" stop="76664"/>
              <exon start="76757" stop="76991"/>
              <exon start="77723" stop="77788"/>
              <exon start="78367" stop="78412"/>
              <exon start="79623" stop="79666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75106" stop="75247"/>
              <exon start="76622" stop="76664"/>
              <exon start="76757" stop="76991"/>
              <exon start="77723" stop="77788"/>
              <exon start="78367" stop="78412"/>
              <exon start="79623" stop="79782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76624" stop="76664"/>
              <exon start="76757" stop="76991"/>
              <exon start="77723" stop="77788"/>
              <exon start="78367" stop="78412"/>
              <exon start="79623" stop="79767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCGGTGGAAAATTGTTCGACGTGGAAGACGATACGTTCGATGGCGAAATAGCAGAAAACCTAAAAATAAGGAAATTGAGAGCAAAAATCTGAAATTATAGTCCATTTCTATGGTCATGTCAATGTCCCTGCGACTTTGTTGCAGACCTTCAATTTCT : GGTTTCAAGAATAAAAGAGATTTGTTGGGCTTAGAATTGGCAG : CTTATCAATCAAGTAAGACAATGGGGAAATGGTTAAGTGGAGTGAAGAAGTTCATTCCCTTTGAGGGATATGTTAAGTCTGTGAAAACGGCAGCACGAATATCATTTCCAAAGATCTCAGCAGACTGTCAAGATAAAGAGCCTTCAAATTTTTTGAGTCACAAGAAGATGGTTCCTTATTCGAACCCCCCTAGCACGGAAGATGTGGATAGTTTGTATGAATTCTTTGATAGAAG : TACCAAGCTTGTTGTATTGACGGGAGCTGGCATGAGCACAGAGAGTGGAATTCCGGATTACAGAAG : CCCAAACGGAGCTTATAGTACGGGTTTCAAACCAATTACCCATCAG : GAGTTTCTACGATCAATCAAGGCTCGAAGGCGTTATTGGGCACGGAGCTATGCTGGCTGGCGACGTTTCACTGCTGCTCAACCTAGTACAGGTCATATAGCTCTATCATCTCTTGAGAAAGCAGGCCATATAAGTTTTATGATTACACAGAATGTGGACA</gDNA_template>
            <first_frame> S  G  G  K  L  F  D  V  E  D  D  T  F  D  G  E  I  A  E  N  L  K  I  R  K  L  R  A  K  I  *  N  Y  S  P  F  L  W  S  C  Q  C  P  C  D  F  V  A  D  L  Q  F  L :   V  S  R  I  K  E  I  C  W  A  *  N  W  Q  :  L  I  N  Q  V  R  Q  W  G  N  G  *  V  E  *  R  S  S  F  P  L  R  D  M  L  S  L  *  K  R  Q  H  E  Y  H  F  Q  R  S  Q  Q  T  V  K  I  K  S  L  Q  I  F  *  V  T  R  R  W  F  L  I  R  T  P  L  A  R  K  M  W  I  V  C  M  N  S  L  I  E   : V  P  S  L  L  Y  *  R  E  L  A  *  A  Q  R  V  E  F  R  I  T  E   : A  Q  T  E  L  I  V  R  V  S  N  Q  L  P  I  R :   S  F  Y  D  Q  S  R  L  E  G  V  I  G  H  G  A  M  L  A  G  D  V  S  L  L  L  N  L  V  Q  V  I  *  L  Y  H  L  L  R  K  Q  A  I  *  V  L  *  L  H  R  M  W  T </first_frame>
            <second_frame>  A  V  E  N  C  S  T  W  K  T  I  R  S  M  A  K  *  Q  K  T  *  K  *  G  N  *  E  Q  K  S  E  I  I  V  H  F  Y  G  H  V  N  V  P  A  T  L  L  Q  T  F  N  F   : W  F  Q  E  *  K  R  F  V  G  L  R  I  G  S :   L  S  I  K  *  D  N  G  E  M  V  K  W  S  E  E  V  H  S  L  *  G  I  C  *  V  C  E  N  G  S  T  N  I  I  S  K  D  L  S  R  L  S  R  *  R  A  F  K  F  F  E  S  Q  E  D  G  S  L  F  E  P  P  *  H  G  R  C  G  *  F  V  *  I  L  *  *  K  :  Y  Q  A  C  C  I  D  G  S  W  H  E  H  R  E  W  N  S  G  L  Q  K  :  P  K  R  S  L  *  Y  G  F  Q  T  N  Y  P  S   : G  V  S  T  I  N  Q  G  S  K  A  L  L  G  T  E  L  C  W  L  A  T  F  H  C  C  S  T  *  Y  R  S  Y  S  S  I  I  S  *  E  S  R  P  Y  K  F  Y  D  Y  T  E  C  G   </second_frame>
            <third_frame>   R  W  K  I  V  R  R  G  R  R  Y  V  R  W  R  N  S  R  K  P  K  N  K  E  I  E  S  K  N  L  K  L  *  S  I  S  M  V  M  S  M  S  L  R  L  C  C  R  P  S  I  S  :  G  F  K  N  K  R  D  L  L  G  L  E  L  A   : A  Y  Q  S  S  K  T  M  G  K  W  L  S  G  V  K  K  F  I  P  F  E  G  Y  V  K  S  V  K  T  A  A  R  I  S  F  P  K  I  S  A  D  C  Q  D  K  E  P  S  N  F  L  S  H  K  K  M  V  P  Y  S  N  P  P  S  T  E  D  V  D  S  L  Y  E  F  F  D  R  S :   T  K  L  V  V  L  T  G  A  G  M  S  T  E  S  G  I  P  D  Y  R  S :   P  N  G  A  Y  S  T  G  F  K  P  I  T  H  Q  :  E  F  L  R  S  I  K  A  R  R  R  Y  W  A  R  S  Y  A  G  W  R  R  F  T  A  A  Q  P  S  T  G  H  I  A  L  S  S  L  E  K  A  G  H  I  S  F  M  I  T  Q  N  V  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75191" stop="75247"/>
                    <exon start="76622" stop="76664"/>
                    <exon start="76757" stop="76991"/>
                    <exon start="77723" stop="77788"/>
                    <exon start="78367" stop="78412"/>
                    <exon start="79623" stop="79781"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SISMVMSMSLRLCCRPSISGFKNKRDLLGLELAAYQSSKTMGKWLSGVKKFIPFEGYVKSVKTAARISFPKISADCQDKEPSNFLSHKKMVPYSNPPSTEDVDSLYEFFDRSTKLVVLTGAGMSTESGIPDYRSPNGAYSTGFKPITHQEFLRSIKARRRYWARSYAGWRRFTAAQPSTGHIALSSLEKAGHISFMITQNVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="88012" PGL_stop="90983"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88012" e_stop="88339"/>
            <exon e_start="88705" e_stop="88979"/>
            <exon e_start="89290" e_stop="89994"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88012" e_stop="88339" e_length="328"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88340" i_stop="88704" i_length="365"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88705" e_stop="88979" e_length="275"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="88980" i_stop="89289" i_length="310"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89290" e_stop="89994" e_length="705"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88012" stop="88339"/>
              <exon start="88705" stop="88979"/>
              <exon start="89290" stop="89933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88023" stop="88339"/>
              <exon start="88705" stop="88979"/>
              <exon start="89290" stop="89979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88024" stop="88339"/>
              <exon start="88705" stop="88979"/>
              <exon start="89290" stop="89380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88024" stop="88339"/>
              <exon start="88705" stop="88932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88024" stop="88339"/>
              <exon start="88705" stop="88850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88025" stop="88339"/>
              <exon start="88705" stop="88979"/>
              <exon start="89290" stop="89988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88030" stop="88339"/>
              <exon start="88705" stop="88878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88031" stop="88339"/>
              <exon start="88705" stop="88838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88032" stop="88339"/>
              <exon start="88705" stop="88850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88035" stop="88339"/>
              <exon start="88705" stop="88930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88036" stop="88339"/>
              <exon start="88705" stop="88929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88036" stop="88339"/>
              <exon start="88705" stop="88890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88842" stop="88979"/>
              <exon start="89290" stop="89914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88860" stop="88979"/>
              <exon start="89290" stop="89647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88924" stop="88979"/>
              <exon start="89290" stop="89950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89300" stop="89994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89311" stop="89988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCAAAGAAACTGAAACTAACACAAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTG : AGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGTACCGCCTCGCCAACGTGGACCGCTCTGCTGGCAAGAACAATAACTTGAGG : CTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGTAAAAACAAATGAAAATTTGTTAATATCAAGTTATCATTCTTCAAATCTCT</gDNA_template>
            <first_frame> C  Q  R  N  *  N  *  H  K  A  G  A  G  A  A  T  N  R  E  K  K  T  E  E  D  K  R  K  I  Y  R  I  R  I  E  R  K  G  E  V  K  L  R  R  V  R  I  S  K  E  M  N  K  G  A  N  G  N  Q  Q  L  E  L  P  A  G  F  R  F  H  P  T  D  D  E  L  V  Q  H  Y  L  C  R  K  C  A  G  Q  S  I  A  V  S  I  I  A  E  I  D  L  Y  K  F  D  P  W  Q  L  P   : E  K  A  L  Y  G  E  K  E  W  Y  F  F  S  P  R  D  R  K  Y  P  N  G  S  R  P  N  R  A  A  G  T  G  Y  W  K  A  T  G  A  D  K  P  V  G  K  P  K  T  L  G  I  K  K  A  L  V  F  Y  A  G  K  A  P  R  G  I  K  T  N  W  I  M  H  E  Y  R  L  A  N  V  D  R  S  A  G  K  N  N  N  L  R  :  L  D  D  W  V  L  C  R  I  Y  N  K  K  G  T  L  E  K  H  Y  N  V  D  N  K  E  T  T  S  F  G  E  F  D  E  E  I  K  P  K  I  L  P  T  Q  L  A  P  M  P  P  R  P  R  S  T  P  A  N  D  Y  F  Y  F  E  S  S  E  S  M  T  R  M  H  T  T  N  S  S  S  G  S  E  H  V  L  S  P  C  D  K  E  V  Q  S  A  P  K  W  D  E  D  H  R  N  T  L  D  F  Q  L  N  Y  L  D  G  L  L  N  E  P  F  E  T  Q  M  Q  Q  Q  I  C  N  F  D  Q  F  N  N  F  Q  D  M  F  L  Y  M  Q  K  P  Y  *  N  C  I  N  S  L  D  L  N  *  V  *  S  M  T  F  S  L  F  F  G  G  V  G  Q  L  F  I  K  *  F  R  E  V  Q  N  A  S  Q  I  W  W  A  T  A  Q  M  S  L  D  K  H  S  Q  R  V  V  *  K  G  L  L  L  L  *  G  M  *  K  Q  M  K  I  C  *  Y  Q  V  I  I  L  Q  I  S </first_frame>
            <second_frame>  V  K  E  T  E  T  N  T  K  Q  E  Q  E  Q  Q  Q  T  E  R  R  K  Q  R  K  I  R  G  K  F  I  E  F  E  S  R  E  K  G  K  *  S  C  E  E  *  E  F  Q  R  K  *  T  K  E  Q  T  E  I  S  N  W  S  Y  R  R  D  S  D  S  I  R  Q  T  T  N  W  C  S  T  I  S  A  G  N  A  P  D  S  R  L  L  Y  Q  L  *  L  K  L  I  F  T  S  L  I  H  G  S  C  L  :  R  R  L  C  T  V  K  K  S  G  I  F  S  H  Q  G  I  E  N  I  R  T  V  H  G  R  T  E  Q  Q  E  P  V  I  G  R  Q  P  E  L  I  N  R  W  E  N  P  K  P  *  G  *  R  R  H  L  C  S  M  P  E  K  H  P  E  V  *  K  Q  I  G  L  C  T  S  T  A  S  P  T  W  T  A  L  L  A  R  T  I  T  *  G :   L  M  I  G  Y  C  V  E  Y  T  T  R  K  A  H  L  R  S  I  T  M  W  T  T  R  K  L  Q  A  L  E  N  L  M  K  K  *  N  Q  K  Y  C  P  H  N  *  H  R  C  H  H  G  L  D  R  H  Q  Q  T  T  T  F  I  S  S  H  Q  S  R  *  L  E  C  T  R  Q  T  R  A  L  A  Q  S  M  S  C  R  H  V  T  R  R  F  R  A  R  P  N  G  T  K  T  T  E  T  P  L  I  F  S  *  T  I  W  M  V  Y  *  M  N  H  L  K  P  K  C  S  S  K  F  A  T  L  T  S  S  T  I  S  K  T  C  S  Y  T  C  K  N  L  T  K  I  V  *  I  H  W  I  *  I  E  C  D  P  *  H  F  L  C  S  L  V  V  *  V  N  F  L  L  S  S  L  E  K  Y  K  M  L  V  K  F  G  G  L  Q  H  K  *  A  L  I  S  I  A  K  E  S  Y  R  R  A  Y  Y  Y  C  K  V  C  K  N  K  *  K  F  V  N  I  K  L  S  F  F  K  S   </second_frame>
            <third_frame>   S  K  K  L  K  L  T  Q  S  R  S  R  S  S  N  K  Q  R  E  E  N  R  G  R  *  E  E  N  L  S  N  S  N  R  E  K  R  G  S  E  V  A  K  S  E  N  F  K  G  N  E  Q  R  S  K  R  K  S  A  I  G  V  T  G  G  I  Q  I  P  S  D  R  R  R  I  G  A  A  L  S  L  Q  E  M  R  R  T  V  D  C  C  I  N  Y  S  *  N  *  S  L  Q  V  *  S  M  A  V  A  * :   E  G  F  V  R  *  K  R  V  V  F  F  L  T  K  G  *  K  I  S  E  R  F  T  A  E  P  S  S  R  N  R  L  L  E  G  N  R  S  *  *  T  G  G  K  T  Q  N  L  R  D  K  E  G  T  C  V  L  C  R  K  S  T  Q  R  Y  K  N  K  L  D  Y  A  R  V  P  P  R  Q  R  G  P  L  C  W  Q  E  Q  *  L  E   : A  *  *  L  G  I  V  S  N  I  Q  Q  E  R  H  T  *  E  A  L  Q  C  G  Q  Q  G  N  Y  K  L  W  R  I  *  *  R  N  K  T  K  N  I  A  H  T  I  S  T  D  A  T  T  A  S  I  D  T  S  K  R  L  L  L  F  R  V  I  R  V  D  D  *  N  A  H  D  K  L  E  L  W  L  R  A  C  L  V  A  M  *  Q  G  G  S  E  R  A  Q  M  G  R  R  P  Q  K  H  P  *  F  S  A  K  L  F  G  W  F  T  K  *  T  I  *  N  P  N  A  A  A  N  L  Q  L  *  P  V  Q  Q  F  P  R  H  V  P  I  H  A  K  T  L  L  K  L  Y  K  F  I  G  S  K  L  S  V  I  H  D  I  F  F  V  L  W  W  C  R  S  T  F  Y  *  V  V  *  R  S  T  K  C  *  S  N  L  V  G  Y  S  T  N  E  P  *  *  A  *  P  K  S  R  I  E  G  L  I  I  I  V  R  Y  V  K  T  N  E  N  L  L  I  S  S  Y  H  S  S  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88033" stop="88339"/>
                    <exon start="88705" stop="88979"/>
                    <exon start="89290" stop="89742"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKAGAGAATNREKKTEEDKRKIYRIRIERKGEVKLRRVRISKEMNKGANGNQQLELPAGFRFHPTDDELVQHYLCRKCAGQSIAVSIIAEIDLYKFDPWQLPEKALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPVGKPKTLGIKKALVFYAGKAPRGIKTNWIMHEYRLANVDRSAGKNNNLRLDDWVLCRIYNKKGTLEKHYNVDNKETTSFGEFDEEIKPKILPTQLAPMPPRPRSTPANDYFYFESSESMTRMHTTNSSSGSEHVLSPCDKEVQSAPKWDEDHRNTLDFQLNYLDGLLNEPFETQMQQQICNFDQFNNFQDMFLYMQKPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="88012" e_stop="88339"/>
            <exon e_start="88705" e_stop="88979"/>
            <exon e_start="89290" e_stop="89973"/>
            <exon e_start="90165" e_stop="90171"/>
            <exon e_start="90948" e_stop="90983"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.296" e_score="0.998"/>
          <exon-intron don_prob="0.000" acc_prob="0.973" e_score="0.857"/>
          <exon-only e_score="0.583"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88012" e_stop="88339" e_length="328"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88340" i_stop="88704" i_length="365"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88705" e_stop="88979" e_length="275"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="88980" i_stop="89289" i_length="310"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="89290" e_stop="89973" e_length="684"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.296">
            <gDNA_intron_boundary i_start="89974" i_stop="90164" i_length="191"/>
          </intron>
          <exon e_serial="4" e_score="0.857">
            <gDNA_exon_boundary e_start="90165" e_stop="90171" e_length="7"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="90172" i_stop="90947" i_length="776"/>
          </intron>
          <exon e_serial="5" e_score="0.583">
            <gDNA_exon_boundary e_start="90948" e_stop="90983" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88012" stop="88339"/>
              <exon start="88705" stop="88979"/>
              <exon start="89290" stop="89933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88024" stop="88339"/>
              <exon start="88705" stop="88979"/>
              <exon start="89290" stop="89380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88024" stop="88339"/>
              <exon start="88705" stop="88932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88024" stop="88339"/>
              <exon start="88705" stop="88850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88030" stop="88339"/>
              <exon start="88705" stop="88878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88031" stop="88339"/>
              <exon start="88705" stop="88838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88032" stop="88339"/>
              <exon start="88705" stop="88850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88035" stop="88339"/>
              <exon start="88705" stop="88930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88036" stop="88339"/>
              <exon start="88705" stop="88929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88036" stop="88339"/>
              <exon start="88705" stop="88890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88842" stop="88979"/>
              <exon start="89290" stop="89914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88860" stop="88979"/>
              <exon start="89290" stop="89647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88924" stop="88979"/>
              <exon start="89290" stop="89950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89592" stop="89973"/>
              <exon start="90165" stop="90171"/>
              <exon start="90948" stop="90983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376982" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCAAAGAAACTGAAACTAACACAAAGCAGGAGCAGGAGCAGCAACAAACAGAGAGAAGAAAACAGAGGAAGATAAGAGGAAAATTTATCGAATTCGAATCGAGAGAAAAGGGGAAGTGAAGTTGCGAAGAGTGAGAATTTCAAAGGAAATGAACAAAGGAGCAAACGGAAATCAGCAATTGGAGTTACCGGCGGGATTCAGATTCCATCCGACAGACGACGAATTGGTGCAGCACTATCTCTGCAGGAAATGCGCCGGACAGTCGATTGCTGTATCAATTATAGCTGAAATTGATCTTTACAAGTTTGATCCATGGCAGTTGCCTG : AGAAGGCTTTGTACGGTGAAAAAGAGTGGTATTTTTTCTCACCAAGGGATAGAAAATATCCGAACGGTTCACGGCCGAACCGAGCAGCAGGAACCGGTTATTGGAAGGCAACCGGAGCTGATAAACCGGTGGGAAAACCCAAAACCTTAGGGATAAAGAAGGCACTTGTGTTCTATGCCGGAAAAGCACCCAGAGGTATAAAAACAAATTGGATTATGCACGAGTACCGCCTCGCCAACGTGGACCGCTCTGCTGGCAAGAACAATAACTTGAGG : CTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGTAAAAACAAATGAAAATTTGTTAATATCAA : GAAAAAA : TCGAAAGGAAGTAGACAACAACAAAAACATACCCAA</gDNA_template>
            <first_frame> C  Q  R  N  *  N  *  H  K  A  G  A  G  A  A  T  N  R  E  K  K  T  E  E  D  K  R  K  I  Y  R  I  R  I  E  R  K  G  E  V  K  L  R  R  V  R  I  S  K  E  M  N  K  G  A  N  G  N  Q  Q  L  E  L  P  A  G  F  R  F  H  P  T  D  D  E  L  V  Q  H  Y  L  C  R  K  C  A  G  Q  S  I  A  V  S  I  I  A  E  I  D  L  Y  K  F  D  P  W  Q  L  P   : E  K  A  L  Y  G  E  K  E  W  Y  F  F  S  P  R  D  R  K  Y  P  N  G  S  R  P  N  R  A  A  G  T  G  Y  W  K  A  T  G  A  D  K  P  V  G  K  P  K  T  L  G  I  K  K  A  L  V  F  Y  A  G  K  A  P  R  G  I  K  T  N  W  I  M  H  E  Y  R  L  A  N  V  D  R  S  A  G  K  N  N  N  L  R  :  L  D  D  W  V  L  C  R  I  Y  N  K  K  G  T  L  E  K  H  Y  N  V  D  N  K  E  T  T  S  F  G  E  F  D  E  E  I  K  P  K  I  L  P  T  Q  L  A  P  M  P  P  R  P  R  S  T  P  A  N  D  Y  F  Y  F  E  S  S  E  S  M  T  R  M  H  T  T  N  S  S  S  G  S  E  H  V  L  S  P  C  D  K  E  V  Q  S  A  P  K  W  D  E  D  H  R  N  T  L  D  F  Q  L  N  Y  L  D  G  L  L  N  E  P  F  E  T  Q  M  Q  Q  Q  I  C  N  F  D  Q  F  N  N  F  Q  D  M  F  L  Y  M  Q  K  P  Y  *  N  C  I  N  S  L  D  L  N  *  V  *  S  M  T  F  S  L  F  F  G  G  V  G  Q  L  F  I  K  *  F  R  E  V  Q  N  A  S  Q  I  W  W  A  T  A  Q  M  S  L  D  K  H  S  Q  R  V  V  *  K  G  L  L  L  L  *  G  M  *  K  Q  M  K  I  C  *  Y  Q  :  E  K   : I  E  R  K  *  T  T  T  K  T  Y  P  </first_frame>
            <second_frame>  V  K  E  T  E  T  N  T  K  Q  E  Q  E  Q  Q  Q  T  E  R  R  K  Q  R  K  I  R  G  K  F  I  E  F  E  S  R  E  K  G  K  *  S  C  E  E  *  E  F  Q  R  K  *  T  K  E  Q  T  E  I  S  N  W  S  Y  R  R  D  S  D  S  I  R  Q  T  T  N  W  C  S  T  I  S  A  G  N  A  P  D  S  R  L  L  Y  Q  L  *  L  K  L  I  F  T  S  L  I  H  G  S  C  L  :  R  R  L  C  T  V  K  K  S  G  I  F  S  H  Q  G  I  E  N  I  R  T  V  H  G  R  T  E  Q  Q  E  P  V  I  G  R  Q  P  E  L  I  N  R  W  E  N  P  K  P  *  G  *  R  R  H  L  C  S  M  P  E  K  H  P  E  V  *  K  Q  I  G  L  C  T  S  T  A  S  P  T  W  T  A  L  L  A  R  T  I  T  *  G :   L  M  I  G  Y  C  V  E  Y  T  T  R  K  A  H  L  R  S  I  T  M  W  T  T  R  K  L  Q  A  L  E  N  L  M  K  K  *  N  Q  K  Y  C  P  H  N  *  H  R  C  H  H  G  L  D  R  H  Q  Q  T  T  T  F  I  S  S  H  Q  S  R  *  L  E  C  T  R  Q  T  R  A  L  A  Q  S  M  S  C  R  H  V  T  R  R  F  R  A  R  P  N  G  T  K  T  T  E  T  P  L  I  F  S  *  T  I  W  M  V  Y  *  M  N  H  L  K  P  K  C  S  S  K  F  A  T  L  T  S  S  T  I  S  K  T  C  S  Y  T  C  K  N  L  T  K  I  V  *  I  H  W  I  *  I  E  C  D  P  *  H  F  L  C  S  L  V  V  *  V  N  F  L  L  S  S  L  E  K  Y  K  M  L  V  K  F  G  G  L  Q  H  K  *  A  L  I  S  I  A  K  E  S  Y  R  R  A  Y  Y  Y  C  K  V  C  K  N  K  *  K  F  V  N  I  K :   K  K  :  S  K  G  S  R  Q  Q  Q  K  H  T  Q </second_frame>
            <third_frame>   S  K  K  L  K  L  T  Q  S  R  S  R  S  S  N  K  Q  R  E  E  N  R  G  R  *  E  E  N  L  S  N  S  N  R  E  K  R  G  S  E  V  A  K  S  E  N  F  K  G  N  E  Q  R  S  K  R  K  S  A  I  G  V  T  G  G  I  Q  I  P  S  D  R  R  R  I  G  A  A  L  S  L  Q  E  M  R  R  T  V  D  C  C  I  N  Y  S  *  N  *  S  L  Q  V  *  S  M  A  V  A  * :   E  G  F  V  R  *  K  R  V  V  F  F  L  T  K  G  *  K  I  S  E  R  F  T  A  E  P  S  S  R  N  R  L  L  E  G  N  R  S  *  *  T  G  G  K  T  Q  N  L  R  D  K  E  G  T  C  V  L  C  R  K  S  T  Q  R  Y  K  N  K  L  D  Y  A  R  V  P  P  R  Q  R  G  P  L  C  W  Q  E  Q  *  L  E   : A  *  *  L  G  I  V  S  N  I  Q  Q  E  R  H  T  *  E  A  L  Q  C  G  Q  Q  G  N  Y  K  L  W  R  I  *  *  R  N  K  T  K  N  I  A  H  T  I  S  T  D  A  T  T  A  S  I  D  T  S  K  R  L  L  L  F  R  V  I  R  V  D  D  *  N  A  H  D  K  L  E  L  W  L  R  A  C  L  V  A  M  *  Q  G  G  S  E  R  A  Q  M  G  R  R  P  Q  K  H  P  *  F  S  A  K  L  F  G  W  F  T  K  *  T  I  *  N  P  N  A  A  A  N  L  Q  L  *  P  V  Q  Q  F  P  R  H  V  P  I  H  A  K  T  L  L  K  L  Y  K  F  I  G  S  K  L  S  V  I  H  D  I  F  F  V  L  W  W  C  R  S  T  F  Y  *  V  V  *  R  S  T  K  C  *  S  N  L  V  G  Y  S  T  N  E  P  *  *  A  *  P  K  S  R  I  E  G  L  I  I  I  V  R  Y  V  K  T  N  E  N  L  L  I  S   : R  K  N :   R  K  E  V  D  N  N  K  N  I  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88033" stop="88339"/>
                    <exon start="88705" stop="88979"/>
                    <exon start="89290" stop="89742"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKAGAGAATNREKKTEEDKRKIYRIRIERKGEVKLRRVRISKEMNKGANGNQQLELPAGFRFHPTDDELVQHYLCRKCAGQSIAVSIIAEIDLYKFDPWQLPEKALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPVGKPKTLGIKKALVFYAGKAPRGIKTNWIMHEYRLANVDRSAGKNNNLRLDDWVLCRIYNKKGTLEKHYNVDNKETTSFGEFDEEIKPKILPTQLAPMPPRPRSTPANDYFYFESSESMTRMHTTNSSSGSEHVLSPCDKEVQSAPKWDEDHRNTLDFQLNYLDGLLNEPFETQMQQQICNFDQFNNFQDMFLYMQKPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="88985" e_stop="89994"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88985" e_stop="89994" e_length="1010"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88985" stop="89691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88985" stop="89681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88986" stop="89679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88986" stop="89545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89194" stop="89954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89285" stop="89945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89300" stop="89994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89311" stop="89988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTTCTTCAGCTTTAATTTTTTATTTTCGGAGATGAGATTCAAGATTCGAGTAATATAGTATGGTAAAATTACTGAGTTTACGTGAACTATACTCACATCTCTAATAGTGATATCTCCTAAGATTTACAATGTTTCAAATGAAAAATAGTGGAAGATTTCACTTTAATTATCAACAATTAGGTGTGGCACCCATTTAACATATAGTAATAAGTAAAATAAAATGGTCATTATATTCTGTAACTTATGAGTGCAAAATACAATTTGTAAATTGTTTATTGATTATGTGATTTGACATTATTGCAGCTTGATGATTGGGTATTGTGTCGAATATACAACAAGAAAGGCACACTTGAGAAGCATTACAATGTGGACAACAAGGAAACTACAAGCTTTGGAGAATTTGATGAAGAAATAAAACCAAAAATATTGCCCACACAATTAGCACCGATGCCACCACGGCCTCGATCGACACCAGCAAACGACTACTTTTATTTCGAGTCATCAGAGTCGATGACTAGAATGCACACGACAAACTCGAGCTCTGGCTCAGAGCATGTCTTGTCGCCATGTGACAAGGAGGTTCAGAGCGCGCCCAAATGGGACGAAGACCACAGAAACACCCTTGATTTTCAGCTAAACTATTTGGATGGTTTACTAAATGAACCATTTGAAACCCAAATGCAGCAGCAAATTTGCAACTTTGACCAGTTCAACAATTTCCAAGACATGTTCCTATACATGCAAAAACCTTACTAAAATTGTATAAATTCATTGGATCTAAATTGAGTGTGATCCATGACATTTTCTTTGTTCTTTGGTGGTGTAGGTCAACTTTTTATTAAGTAGTTTAGAGAAGTACAAAATGCTAGTCAAATTTGGTGGGCTACAGCACAAATGAGCCTTGATAAGCATAGCCAAAGAGTCGTATAGAAGGGCTTATTATTATTGTAAGGTATGTAAAAACAAATGAAAATTTGTTAATATCAAGTTATCATTCTTCAAATCTCT</gDNA_template>
            <first_frame> S  F  F  S  F  N  F  L  F  S  E  M  R  F  K  I  R  V  I  *  Y  G  K  I  T  E  F  T  *  T  I  L  T  S  L  I  V  I  S  P  K  I  Y  N  V  S  N  E  K  *  W  K  I  S  L  *  L  S  T  I  R  C  G  T  H  L  T  Y  S  N  K  *  N  K  M  V  I  I  F  C  N  L  *  V  Q  N  T  I  C  K  L  F  I  D  Y  V  I  *  H  Y  C  S  L  M  I  G  Y  C  V  E  Y  T  T  R  K  A  H  L  R  S  I  T  M  W  T  T  R  K  L  Q  A  L  E  N  L  M  K  K  *  N  Q  K  Y  C  P  H  N  *  H  R  C  H  H  G  L  D  R  H  Q  Q  T  T  T  F  I  S  S  H  Q  S  R  *  L  E  C  T  R  Q  T  R  A  L  A  Q  S  M  S  C  R  H  V  T  R  R  F  R  A  R  P  N  G  T  K  T  T  E  T  P  L  I  F  S  *  T  I  W  M  V  Y  *  M  N  H  L  K  P  K  C  S  S  K  F  A  T  L  T  S  S  T  I  S  K  T  C  S  Y  T  C  K  N  L  T  K  I  V  *  I  H  W  I  *  I  E  C  D  P  *  H  F  L  C  S  L  V  V  *  V  N  F  L  L  S  S  L  E  K  Y  K  M  L  V  K  F  G  G  L  Q  H  K  *  A  L  I  S  I  A  K  E  S  Y  R  R  A  Y  Y  Y  C  K  V  C  K  N  K  *  K  F  V  N  I  K  L  S  F  F  K  S   </first_frame>
            <second_frame>  P  S  S  A  L  I  F  Y  F  R  R  *  D  S  R  F  E  *  Y  S  M  V  K  L  L  S  L  R  E  L  Y  S  H  L  *  *  *  Y  L  L  R  F  T  M  F  Q  M  K  N  S  G  R  F  H  F  N  Y  Q  Q  L  G  V  A  P  I  *  H  I  V  I  S  K  I  K  W  S  L  Y  S  V  T  Y  E  C  K  I  Q  F  V  N  C  L  L  I  M  *  F  D  I  I  A  A  *  *  L  G  I  V  S  N  I  Q  Q  E  R  H  T  *  E  A  L  Q  C  G  Q  Q  G  N  Y  K  L  W  R  I  *  *  R  N  K  T  K  N  I  A  H  T  I  S  T  D  A  T  T  A  S  I  D  T  S  K  R  L  L  L  F  R  V  I  R  V  D  D  *  N  A  H  D  K  L  E  L  W  L  R  A  C  L  V  A  M  *  Q  G  G  S  E  R  A  Q  M  G  R  R  P  Q  K  H  P  *  F  S  A  K  L  F  G  W  F  T  K  *  T  I  *  N  P  N  A  A  A  N  L  Q  L  *  P  V  Q  Q  F  P  R  H  V  P  I  H  A  K  T  L  L  K  L  Y  K  F  I  G  S  K  L  S  V  I  H  D  I  F  F  V  L  W  W  C  R  S  T  F  Y  *  V  V  *  R  S  T  K  C  *  S  N  L  V  G  Y  S  T  N  E  P  *  *  A  *  P  K  S  R  I  E  G  L  I  I  I  V  R  Y  V  K  T  N  E  N  L  L  I  S  S  Y  H  S  S  N  L  </second_frame>
            <third_frame>   L  L  Q  L  *  F  F  I  F  G  D  E  I  Q  D  S  S  N  I  V  W  *  N  Y  *  V  Y  V  N  Y  T  H  I  S  N  S  D  I  S  *  D  L  Q  C  F  K  *  K  I  V  E  D  F  T  L  I  I  N  N  *  V  W  H  P  F  N  I  *  *  *  V  K  *  N  G  H  Y  I  L  *  L  M  S  A  K  Y  N  L  *  I  V  Y  *  L  C  D  L  T  L  L  Q  L  D  D  W  V  L  C  R  I  Y  N  K  K  G  T  L  E  K  H  Y  N  V  D  N  K  E  T  T  S  F  G  E  F  D  E  E  I  K  P  K  I  L  P  T  Q  L  A  P  M  P  P  R  P  R  S  T  P  A  N  D  Y  F  Y  F  E  S  S  E  S  M  T  R  M  H  T  T  N  S  S  S  G  S  E  H  V  L  S  P  C  D  K  E  V  Q  S  A  P  K  W  D  E  D  H  R  N  T  L  D  F  Q  L  N  Y  L  D  G  L  L  N  E  P  F  E  T  Q  M  Q  Q  Q  I  C  N  F  D  Q  F  N  N  F  Q  D  M  F  L  Y  M  Q  K  P  Y  *  N  C  I  N  S  L  D  L  N  *  V  *  S  M  T  F  S  L  F  F  G  G  V  G  Q  L  F  I  K  *  F  R  E  V  Q  N  A  S  Q  I  W  W  A  T  A  Q  M  S  L  D  K  H  S  Q  R  V  V  *  K  G  L  L  L  L  *  G  M  *  K  Q  M  K  I  C  *  Y  Q  V  I  I  L  Q  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89266" stop="89742"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCDLTLLQLDDWVLCRIYNKKGTLEKHYNVDNKETTSFGEFDEEIKPKILPTQLAPMPPRPRSTPANDYFYFESSESMTRMHTTNSSSGSEHVLSPCDKEVQSAPKWDEDHRNTLDFQLNYLDGLLNEPFETQMQQQICNFDQFNNFQDMFLYMQKPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="92791" PGL_stop="92014"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92791" e_stop="92014"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="92791" e_stop="92014" e_length="778"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92791" stop="92258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92740" stop="92014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334946" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGACTAACAAAACTGCTAATGCTGCTGCCGGTTCCACTGATGCTGATCATGGGAAAAAGCCCCTTATTCAGGAGATATCTTTCAGTCACAAAAGCATGTTACTTGGAGCTGAATGGCATAACATGGGGAAATTGAGAAAAAAAACTTTCAAGAAAAAGCAGGTATGCAAAGGCTTTAACTCTAACATGCATGCATCTAACAAACCAATAAATGTCATGAATCTAGAATCTTGTAAACAAACATCATGTTCATTGTCTAAATCAGCTGATAGGTGTAATACTATGAAAAGAAATCCTAAAGCTAAGTCAGGCTTACTTGGAATCCGAAAGCAAAAGAATGGGAGATATAGTGCTGAAATTAGAGACCCGATTAAGCATAAGCAAGTATGGTTAGGTACTTTCAACACTATTGAAGAGGCTTCACAAGCTTATTTATCCAAGAAGTCTGAGTTTGATATGTTAACTCAGGGATATAAGGAGGATAAACCAAATAATTGTGATCAAACTAAGCCTGAATCATCTGTTGGGGCATCATTGTCTAGTGGGGGTAGAAATAAAAAAATGGATTCTCCCAAAACAACGCGTATCATTGGGGTTCGCAAGAACCAGTGGGGGAAATATACATCTGAGATTATAAACCCCATTAGTAAGAAAAAGATTTGGTTGGGGACTTTTGGCACGTATGAAGAGGCTTCCCTAGCTTATCAATCTAAGAAGCTAGAGTTTCGGGAAATAGTCAAGGCAAAGAAGAAATGTAGTAAGAAAATTCATTTAAATG</gDNA_template>
            <first_frame> S  T  N  K  T  A  N  A  A  A  G  S  T  D  A  D  H  G  K  K  P  L  I  Q  E  I  S  F  S  H  K  S  M  L  L  G  A  E  W  H  N  M  G  K  L  R  K  K  T  F  K  K  K  Q  V  C  K  G  F  N  S  N  M  H  A  S  N  K  P  I  N  V  M  N  L  E  S  C  K  Q  T  S  C  S  L  S  K  S  A  D  R  C  N  T  M  K  R  N  P  K  A  K  S  G  L  L  G  I  R  K  Q  K  N  G  R  Y  S  A  E  I  R  D  P  I  K  H  K  Q  V  W  L  G  T  F  N  T  I  E  E  A  S  Q  A  Y  L  S  K  K  S  E  F  D  M  L  T  Q  G  Y  K  E  D  K  P  N  N  C  D  Q  T  K  P  E  S  S  V  G  A  S  L  S  S  G  G  R  N  K  K  M  D  S  P  K  T  T  R  I  I  G  V  R  K  N  Q  W  G  K  Y  T  S  E  I  I  N  P  I  S  K  K  K  I  W  L  G  T  F  G  T  Y  E  E  A  S  L  A  Y  Q  S  K  K  L  E  F  R  E  I  V  K  A  K  K  K  C  S  K  K  I  H  L  N  </first_frame>
            <second_frame>  R  L  T  K  L  L  M  L  L  P  V  P  L  M  L  I  M  G  K  S  P  L  F  R  R  Y  L  S  V  T  K  A  C  Y  L  E  L  N  G  I  T  W  G  N  *  E  K  K  L  S  R  K  S  R  Y  A  K  A  L  T  L  T  C  M  H  L  T  N  Q  *  M  S  *  I  *  N  L  V  N  K  H  H  V  H  C  L  N  Q  L  I  G  V  I  L  *  K  E  I  L  K  L  S  Q  A  Y  L  E  S  E  S  K  R  M  G  D  I  V  L  K  L  E  T  R  L  S  I  S  K  Y  G  *  V  L  S  T  L  L  K  R  L  H  K  L  I  Y  P  R  S  L  S  L  I  C  *  L  R  D  I  R  R  I  N  Q  I  I  V  I  K  L  S  L  N  H  L  L  G  H  H  C  L  V  G  V  E  I  K  K  W  I  L  P  K  Q  R  V  S  L  G  F  A  R  T  S  G  G  N  I  H  L  R  L  *  T  P  L  V  R  K  R  F  G  W  G  L  L  A  R  M  K  R  L  P  *  L  I  N  L  R  S  *  S  F  G  K  *  S  R  Q  R  R  N  V  V  R  K  F  I  *  M </second_frame>
            <third_frame>   D  *  Q  N  C  *  C  C  C  R  F  H  *  C  *  S  W  E  K  A  P  Y  S  G  D  I  F  Q  S  Q  K  H  V  T  W  S  *  M  A  *  H  G  E  I  E  K  K  N  F  Q  E  K  A  G  M  Q  R  L  *  L  *  H  A  C  I  *  Q  T  N  K  C  H  E  S  R  I  L  *  T  N  I  M  F  I  V  *  I  S  *  *  V  *  Y  Y  E  K  K  S  *  S  *  V  R  L  T  W  N  P  K  A  K  E  W  E  I  *  C  *  N  *  R  P  D  *  A  *  A  S  M  V  R  Y  F  Q  H  Y  *  R  G  F  T  S  L  F  I  Q  E  V  *  V  *  Y  V  N  S  G  I  *  G  G  *  T  K  *  L  *  S  N  *  A  *  I  I  C  W  G  I  I  V  *  W  G  *  K  *  K  N  G  F  S  Q  N  N  A  Y  H  W  G  S  Q  E  P  V  G  E  I  Y  I  *  D  Y  K  P  H  *  *  E  K  D  L  V  G  D  F  W  H  V  *  R  G  F  P  S  L  S  I  *  E  A  R  V  S  G  N  S  Q  G  K  E  E  M  *  *  E  N  S  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92791" stop="92015"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STNKTANAAAGSTDADHGKKPLIQEISFSHKSMLLGAEWHNMGKLRKKTFKKKQVCKGFNSNMHASNKPINVMNLESCKQTSCSLSKSADRCNTMKRNPKAKSGLLGIRKQKNGRYSAEIRDPIKHKQVWLGTFNTIEEASQAYLSKKSEFDMLTQGYKEDKPNNCDQTKPESSVGASLSSGGRNKKMDSPKTTRIIGVRKNQWGKYTSEIINPISKKKIWLGTFGTYEEASLAYQSKKLEFREIVKAKKKCSKKIHLN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="94378" PGL_stop="93919"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94378" e_stop="93919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94378" e_stop="93919" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94378" stop="93919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATGAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTAAAATTTCATAC</gDNA_template>
            <first_frame> L  L  *  M  T  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  Q  K  K  Y  L  N  F  F  Y  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  Y  Y  N  K  R  S  Q  K  I  I  F  V  *  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  S  L  N  I  F  F  K  K  K  L  E  V  T  N  I  N  L  K  L  I  F  *  L  S  L  N  E  G  Y  M  *  A  I  F  *  R  Q  G  Y  M  *  A  V  C  I  T  I  R  A  Y  M  N  H  F  Y  Y  E  G  Y  I  S  S  K  *  Q  S  *  E  V  Y  Q  T  L  F  P  I  F  *  N  F  I  </first_frame>
            <second_frame>  Y  C  R  *  P  I  F  S  S  N  T  K  L  N  Y  N  T  H  K  K  N  I  *  I  F  F  I  *  T  K  E  *  K  K  K  T  K  *  E  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  L  Y  E  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  *  I  F  F  L  K  K  N  *  K  *  Q  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  P  F  S  N  G  R  G  I  C  E  P  F  V  *  R  *  G  H  I  *  T  T  F  I  T  R  D  I  S  A  L  N  D  K  V  E  R  Y  I  R  P  F  S  L  F  F  K  I  S  Y </second_frame>
            <third_frame>   I  V  D  D  Q  F  F  L  R  I  R  N  *  I  T  I  H  T  K  K  I  F  E  F  F  L  F  K  L  R  N  E  R  K  K  Q  N  K  N  K  K  L  K  L  L  *  *  K  K  S  K  N  N  F  C  M  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  I  P  K  Y  F  F  *  K  K  I  R  S  N  K  Y  K  F  K  T  N  F  L  T  F  V  K  *  R  V  Y  V  S  H  F  L  T  A  G  V  Y  V  S  R  L  Y  N  D  K  G  I  Y  E  P  L  L  L  R  G  I  Y  Q  L  *  M  T  K  L  R  G  I  S  D  P  F  P  Y  F  L  K  F  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0049A17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="98732" PGL_stop="107034"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98732" e_stop="98802"/>
            <exon e_start="100156" e_stop="100416"/>
            <exon e_start="100625" e_stop="100710"/>
            <exon e_start="102163" e_stop="102221"/>
            <exon e_start="106009" e_stop="106083"/>
            <exon e_start="106849" e_stop="106913"/>
            <exon e_start="106999" e_stop="107034"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.503" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.996"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.488" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.300" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98732" e_stop="98802" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.503">
            <gDNA_intron_boundary i_start="98803" i_stop="100155" i_length="1353"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="100156" e_stop="100416" e_length="261"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="100417" i_stop="100624" i_length="208"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100625" e_stop="100710" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="100711" i_stop="102162" i_length="1452"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="102163" e_stop="102221" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.997">
            <gDNA_intron_boundary i_start="102222" i_stop="106008" i_length="3787"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106009" e_stop="106083" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.488" acc_prob="0.997">
            <gDNA_intron_boundary i_start="106084" i_stop="106848" i_length="765"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="106849" e_stop="106913" e_length="65"/>
          </exon>
          <intron i_serial="6" don_prob="0.944" acc_prob="0.300">
            <gDNA_intron_boundary i_start="106914" i_stop="106998" i_length="85"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="106999" e_stop="107034" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98732" stop="98802"/>
              <exon start="100156" stop="100416"/>
              <exon start="100625" stop="100710"/>
              <exon start="102163" stop="102221"/>
              <exon start="106009" stop="106083"/>
              <exon start="106849" stop="106913"/>
              <exon start="106999" stop="107034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342022" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATTTAGATTTTGTAACTCAGACGCGAAATGGCGATGCAGCTGATTGGCAAGAAGAGGTTTACCAACAG : TGAAAATTTCATCATTGTGGTGCCTCCAAATGAGTTTGTCTGAGTCTGGCAGACTGCACAAAGCAACAGCAGACTGCGCAACTGCCAGCCCACAAGATGTCACAGCTTCACCAGCTAACTGATGCTAATGACCTAATGATGAGGCAGCAAATGGGAATGAAAACAGGAGTTTTACAGCAACAGCAGTCAGTTGGATTTCATCATCCGCAAGTGAAGTCGGAAATATCTTCAGCTCAAACCTATCAGGCAGTATCTCCTCAG : GAACAAAACCTACCTGCTTTGGATGAAAGCAAGAACGGTGCAAATGTGTCCTGGAATTTTCAATGAAGCTTTTCCCAATAAATGAG : GTGCGTGAAGCTCTCATGAGGTTTCATAAGTCGCAGGCTCTTCAAGAGCACATTTACTT : ATTAAGCCTACGAAGGAGATGTATCTATTAGAGCTCAAGTATTTATACCTAAAGATTGCTTCTAAAGTCTGGCAG : GTACCAAACGACCCCTTAAAGCTAAATCCATTCTACACATATAAAACTCTTCTAATCTATCTCAG : AAATTGAGATGGATTGGTATAATTGGATGGCTGCTC</gDNA_template>
            <first_frame> L  I  *  I  L  *  L  R  R  E  M  A  M  Q  L  I  G  K  K  R  F  T  N  S :   E  N  F  I  I  V  V  P  P  N  E  F  V  *  V  W  Q  T  A  Q  S  N  S  R  L  R  N  C  Q  P  T  R  C  H  S  F  T  S  *  L  M  L  M  T  *  *  *  G  S  K  W  E  *  K  Q  E  F  Y  S  N  S  S  Q  L  D  F  I  I  R  K  *  S  R  K  Y  L  Q  L  K  P  I  R  Q  Y  L  L  R :   N  K  T  Y  L  L  W  M  K  A  R  T  V  Q  M  C  P  G  I  F  N  E  A  F  P  N  K  *   : G  A  *  S  S  H  E  V  S  *  V  A  G  S  S  R  A  H  L  L  :  I  K  P  T  K  E  M  Y  L  L  E  L  K  Y  L  Y  L  K  I  A  S  K  V  W  Q  :  V  P  N  D  P  L  K  L  N  P  F  Y  T  Y  K  T  L  L  I  Y  L  R :   N  *  D  G  L  V  *  L  D  G  C   </first_frame>
            <second_frame>  L  F  R  F  C  N  S  D  A  K  W  R  C  S  *  L  A  R  R  G  L  P  T   : V  K  I  S  S  L  W  C  L  Q  M  S  L  S  E  S  G  R  L  H  K  A  T  A  D  C  A  T  A  S  P  Q  D  V  T  A  S  P  A  N  *  C  *  *  P  N  D  E  A  A  N  G  N  E  N  R  S  F  T  A  T  A  V  S  W  I  S  S  S  A  S  E  V  G  N  I  F  S  S  N  L  S  G  S  I  S  S   : G  T  K  P  T  C  F  G  *  K  Q  E  R  C  K  C  V  L  E  F  S  M  K  L  F  P  I  N  E  :  V  R  E  A  L  M  R  F  H  K  S  Q  A  L  Q  E  H  I  Y  L :   L  S  L  R  R  R  C  I  Y  *  S  S  S  I  Y  T  *  R  L  L  L  K  S  G  R :   Y  Q  T  T  P  *  S  *  I  H  S  T  H  I  K  L  F  *  S  I  S   : E  I  E  M  D  W  Y  N  W  M  A  A  </second_frame>
            <third_frame>   Y  L  D  F  V  T  Q  T  R  N  G  D  A  A  D  W  Q  E  E  V  Y  Q  Q  :  *  K  F  H  H  C  G  A  S  K  *  V  C  L  S  L  A  D  C  T  K  Q  Q  Q  T  A  Q  L  P  A  H  K  M  S  Q  L  H  Q  L  T  D  A  N  D  L  M  M  R  Q  Q  M  G  M  K  T  G  V  L  Q  Q  Q  Q  S  V  G  F  H  H  P  Q  V  K  S  E  I  S  S  A  Q  T  Y  Q  A  V  S  P  Q  :  E  Q  N  L  P  A  L  D  E  S  K  N  G  A  N  V  S  W  N  F  Q  *  S  F  S  Q  *  M  R :   C  V  K  L  S  *  G  F  I  S  R  R  L  F  K  S  T  F  T   : Y  *  A  Y  E  G  D  V  S  I  R  A  Q  V  F  I  P  K  D  C  F  *  S  L  A   : G  T  K  R  P  L  K  A  K  S  I  L  H  I  *  N  S  S  N  L  S  Q  :  K  L  R  W  I  G  I  I  G  W  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100189" stop="100416"/>
                    <exon start="100625" stop="100690"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCLSLADCTKQQQTAQLPAHKMSQLHQLTDANDLMMRQQMGMKTGVLQQQQSVGFHHPQVKSEISSAQTYQAVSPQEQNLPALDESKNGANVSWNFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="100627" e_stop="100710"/>
            <exon e_start="102163" e_stop="102221"/>
            <exon e_start="105812" e_stop="105874"/>
            <exon e_start="106009" e_stop="106083"/>
            <exon e_start="106849" e_stop="106913"/>
            <exon e_start="106994" e_stop="107026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.504" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.488" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.655" e_score="0.985"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100627" e_stop="100710" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="100711" i_stop="102162" i_length="1452"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="102163" e_stop="102221" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="102222" i_stop="105811" i_length="3590"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105812" e_stop="105874" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.504" acc_prob="0.997">
            <gDNA_intron_boundary i_start="105875" i_stop="106008" i_length="134"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106009" e_stop="106083" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.488" acc_prob="0.997">
            <gDNA_intron_boundary i_start="106084" i_stop="106848" i_length="765"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="106849" e_stop="106913" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="0.944" acc_prob="0.655">
            <gDNA_intron_boundary i_start="106914" i_stop="106993" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="106994" e_stop="107026" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100627" stop="100710"/>
              <exon start="102163" stop="102221"/>
              <exon start="105812" stop="105874"/>
              <exon start="106009" stop="106083"/>
              <exon start="106849" stop="106913"/>
              <exon start="106994" stop="107026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAACCTACCTGCTTTGGATGAAAGCAAGAACGGTGCAAATGTGTCCTGGAATTTTCAATGAAGCTTTTCCCAATAAATGAG : GTGCGTGAAGCTCTCATGAGGTTTCATAAGTCGCAGGCTCTTCAAGAGCACATTTACTT : ATTTCTCAAGCTCAAATGGGAAATGCAAATGGAGCTAATTGGAAGAAAGAGGTTTACCAAAAG : ATTAAGCCTACGAAGGAGATGTATCTATTAGAGCTCAAGTATTTATACCTAAAGATTGCTTCTAAAGTCTGGCAG : GTACCAAACGACCCCTTAAAGCTAAATCCATTCTACACATATAAAACTCTTCTAATCTATCTCAG : GTCAGAAATTGAGATGGATTGGTATAATTGGAT</gDNA_template>
            <first_frame> T  K  P  T  C  F  G  *  K  Q  E  R  C  K  C  V  L  E  F  S  M  K  L  F  P  I  N  E  :  V  R  E  A  L  M  R  F  H  K  S  Q  A  L  Q  E  H  I  Y  L :   F  L  K  L  K  W  E  M  Q  M  E  L  I  G  R  K  R  F  T  K  R :   L  S  L  R  R  R  C  I  Y  *  S  S  S  I  Y  T  *  R  L  L  L  K  S  G  R :   Y  Q  T  T  P  *  S  *  I  H  S  T  H  I  K  L  F  *  S  I  S   : G  Q  K  L  R  W  I  G  I  I  G  </first_frame>
            <second_frame>  Q  N  L  P  A  L  D  E  S  K  N  G  A  N  V  S  W  N  F  Q  *  S  F  S  Q  *  M  R :   C  V  K  L  S  *  G  F  I  S  R  R  L  F  K  S  T  F  T   : Y  F  S  S  S  N  G  K  C  K  W  S  *  L  E  E  R  G  L  P  K   : D  *  A  Y  E  G  D  V  S  I  R  A  Q  V  F  I  P  K  D  C  F  *  S  L  A   : G  T  K  R  P  L  K  A  K  S  I  L  H  I  *  N  S  S  N  L  S  Q  :  V  R  N  *  D  G  L  V  *  L  D </second_frame>
            <third_frame>   K  T  Y  L  L  W  M  K  A  R  T  V  Q  M  C  P  G  I  F  N  E  A  F  P  N  K  *   : G  A  *  S  S  H  E  V  S  *  V  A  G  S  S  R  A  H  L  L  :  I  S  Q  A  Q  M  G  N  A  N  G  A  N  W  K  K  E  V  Y  Q  K  :  I  K  P  T  K  E  M  Y  L  L  E  L  K  Y  L  Y  L  K  I  A  S  K  V  W  Q  :  V  P  N  D  P  L  K  L  N  P  F  Y  T  Y  K  T  L  L  I  Y  L  R :   S  E  I  E  M  D  W  Y  N  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102192" stop="102221"/>
                    <exon start="105812" stop="105874"/>
                    <exon start="106009" stop="106083"/>
                    <exon start="106849" stop="106913"/>
                    <exon start="106994" stop="107024"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAGSSRAHLLISQAQMGNANGANWKKEVYQKIKPTKEMYLLELKYLYLKIASKVWQVPNDPLKLNPFYTYKTLLIYLRSEIEMDWYNW</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100651" stop="100710"/>
                    <exon start="102163" stop="102221"/>
                    <exon start="105812" stop="105874"/>
                    <exon start="106009" stop="106039"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQERCKCVLEFSMKLFPINEVREALMRFHKSQALQEHIYLFLKLKWEMQMELIGRKRFTKRLSLRRRCIY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="150314" PGL_stop="155814"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="150314" e_stop="150346"/>
            <exon e_start="150820" e_stop="151166"/>
            <exon e_start="155694" e_stop="155814"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="150314" e_stop="150346" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.998">
            <gDNA_intron_boundary i_start="150347" i_stop="150819" i_length="473"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="150820" e_stop="151166" e_length="347"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="151167" i_stop="155693" i_length="4527"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="155694" e_stop="155814" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="150314" stop="150346"/>
              <exon start="150820" stop="151166"/>
              <exon start="155694" stop="155814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCTAGTAGTGGTCAGAATGCCCTTGGTCCAG : GATCGCACAGTATGCAATCCCAAGTCAACAGCCAAGCACAGCAACTTCCTGTACCTATGGTGGCCAATCAAACTCAAACACGACAACCACTGTTGCAGCAAAACCTTCAGAACAATATGGCATCGACTGGGCTGCAAAATTCTGCTAGCTTGGCTCCTTCACTTCCTTCTGTGAGTAATTTGACGCAGGGTACCATGCCAAATGTCGTGGGCCAGAATTCAAATTTGCAAACCATGCAAAACATGCCAAATGTTGGTCAAAACTTGGTAGGAAATGCCATTGGGCAAGGCATGCCTCCTAATATGGTTGCTAATTCTCAGAGGCAGATGCAGGGAAGACAACAACAG : GTTGCTTCTGCACCTGCCCAATCCCTTGCAATTGGTACTCCTGGGATATCAGCCTCACCTTTGCTTGCTGAGTTTACTCCTCTAGATGGTACACATGCCAATGTCTCAGCTGCTGTTCCTG</gDNA_template>
            <first_frame> L  L  V  V  V  R  M  P  L  V  Q  :  D  R  T  V  C  N  P  K  S  T  A  K  H  S  N  F  L  Y  L  W  W  P  I  K  L  K  H  D  N  H  C  C  S  K  T  F  R  T  I  W  H  R  L  G  C  K  I  L  L  A  W  L  L  H  F  L  L  *  V  I  *  R  R  V  P  C  Q  M  S  W  A  R  I  Q  I  C  K  P  C  K  T  C  Q  M  L  V  K  T  W  *  E  M  P  L  G  K  A  C  L  L  I  W  L  L  I  L  R  G  R  C  R  E  D  N  N  R :   L  L  L  H  L  P  N  P  L  Q  L  V  L  L  G  Y  Q  P  H  L  C  L  L  S  L  L  L  *  M  V  H  M  P  M  S  Q  L  L  F  L </first_frame>
            <second_frame>  C  *  *  W  S  E  C  P  W  S  R :   I  A  Q  Y  A  I  P  S  Q  Q  P  S  T  A  T  S  C  T  Y  G  G  Q  S  N  S  N  T  T  T  T  V  A  A  K  P  S  E  Q  Y  G  I  D  W  A  A  K  F  C  *  L  G  S  F  T  S  F  C  E  *  F  D  A  G  Y  H  A  K  C  R  G  P  E  F  K  F  A  N  H  A  K  H  A  K  C  W  S  K  L  G  R  K  C  H  W  A  R  H  A  S  *  Y  G  C  *  F  S  E  A  D  A  G  K  T  T  T   : G  C  F  C  T  C  P  I  P  C  N  W  Y  S  W  D  I  S  L  T  F  A  C  *  V  Y  S  S  R  W  Y  T  C  Q  C  L  S  C  C  S   </second_frame>
            <third_frame>   A  S  S  G  Q  N  A  L  G  P   : G  S  H  S  M  Q  S  Q  V  N  S  Q  A  Q  Q  L  P  V  P  M  V  A  N  Q  T  Q  T  R  Q  P  L  L  Q  Q  N  L  Q  N  N  M  A  S  T  G  L  Q  N  S  A  S  L  A  P  S  L  P  S  V  S  N  L  T  Q  G  T  M  P  N  V  V  G  Q  N  S  N  L  Q  T  M  Q  N  M  P  N  V  G  Q  N  L  V  G  N  A  I  G  Q  G  M  P  P  N  M  V  A  N  S  Q  R  Q  M  Q  G  R  Q  Q  Q  :  V  A  S  A  P  A  Q  S  L  A  I  G  T  P  G  I  S  A  S  P  L  L  A  E  F  T  P  L  D  G  T  H  A  N  V  S  A  A  V  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="150316" stop="150346"/>
                    <exon start="150820" stop="151166"/>
                    <exon start="155694" stop="155813"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASSGQNALGPGSHSMQSQVNSQAQQLPVPMVANQTQTRQPLLQQNLQNNMASTGLQNSASLAPSLPSVSNLTQGTMPNVVGQNSNLQTMQNMPNVGQNLVGNAIGQGMPPNMVANSQRQMQGRQQQVASAPAQSLAIGTPGISASPLLAEFTPLDGTHANVSAAVP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="154846" e_stop="155380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="154846" e_stop="155380" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="154846" stop="155380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478348" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCAGCAATGCCTCAGAATAATCTCACCAACTTGCAACATAATACCTTGTCTGGTGTACCGACAATTTCCAACTCCCAGCAGCACATGATAAATACAGTACAGCCTGGTTCCACTGTGGATTTGGGACAGGGTAATTCATTGAACTCACTGCAGCAGGTGGCTACTGGCTCTTTACAACAGAATCCTGTTAACAGTCCTCAACAAGTTAACATGAGCTCATTAAGCTCACAAAGTGGAACAAACCCCGTACAGGCAAACCTCGGTTCCCTACAGCAAAATTCAAACGCCCTGCAACAGTCACTTCCTAAGCAGCACGAGCAGCAAATGTTGCAGAACCAGCAATTAAGACAGCAATACCACCATAGGCATATGCAGCAGCAACTTTTTCAAAGACAGCAGATAATACAACAGCAGCAAGCGAAGCAACAGCAGACCACGCTGTTGCCAACCCACCAGATGTCTCAGCTTCAACAGATGACTGATGCTAATGACCTAAAGATAAGGCAGCAAATGGGGATAAAACCAGGAGTTTT</gDNA_template>
            <first_frame> W  Q  Q  C  L  R  I  I  S  P  T  C  N  I  I  P  C  L  V  Y  R  Q  F  P  T  P  S  S  T  *  *  I  Q  Y  S  L  V  P  L  W  I  W  D  R  V  I  H  *  T  H  C  S  R  W  L  L  A  L  Y  N  R  I  L  L  T  V  L  N  K  L  T  *  A  H  *  A  H  K  V  E  Q  T  P  Y  R  Q  T  S  V  P  Y  S  K  I  Q  T  P  C  N  S  H  F  L  S  S  T  S  S  K  C  C  R  T  S  N  *  D  S  N  T  T  I  G  I  C  S  S  N  F  F  K  D  S  R  *  Y  N  S  S  K  R  S  N  S  R  P  R  C  C  Q  P  T  R  C  L  S  F  N  R  *  L  M  L  M  T  *  R  *  G  S  K  W  G  *  N  Q  E  F  </first_frame>
            <second_frame>  G  S  N  A  S  E  *  S  H  Q  L  A  T  *  Y  L  V  W  C  T  D  N  F  Q  L  P  A  A  H  D  K  Y  S  T  A  W  F  H  C  G  F  G  T  G  *  F  I  E  L  T  A  A  G  G  Y  W  L  F  T  T  E  S  C  *  Q  S  S  T  S  *  H  E  L  I  K  L  T  K  W  N  K  P  R  T  G  K  P  R  F  P  T  A  K  F  K  R  P  A  T  V  T  S  *  A  A  R  A  A  N  V  A  E  P  A  I  K  T  A  I  P  P  *  A  Y  A  A  A  T  F  S  K  T  A  D  N  T  T  A  A  S  E  A  T  A  D  H  A  V  A  N  P  P  D  V  S  A  S  T  D  D  *  C  *  *  P  K  D  K  A  A  N  G  D  K  T  R  S  F </second_frame>
            <third_frame>   A  A  M  P  Q  N  N  L  T  N  L  Q  H  N  T  L  S  G  V  P  T  I  S  N  S  Q  Q  H  M  I  N  T  V  Q  P  G  S  T  V  D  L  G  Q  G  N  S  L  N  S  L  Q  Q  V  A  T  G  S  L  Q  Q  N  P  V  N  S  P  Q  Q  V  N  M  S  S  L  S  S  Q  S  G  T  N  P  V  Q  A  N  L  G  S  L  Q  Q  N  S  N  A  L  Q  Q  S  L  P  K  Q  H  E  Q  Q  M  L  Q  N  Q  Q  L  R  Q  Q  Y  H  H  R  H  M  Q  Q  Q  L  F  Q  R  Q  Q  I  I  Q  Q  Q  Q  A  K  Q  Q  Q  T  T  L  L  P  T  H  Q  M  S  Q  L  Q  Q  M  T  D  A  N  D  L  K  I  R  Q  Q  M  G  I  K  P  G  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="154848" stop="155378"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAMPQNNLTNLQHNTLSGVPTISNSQQHMINTVQPGSTVDLGQGNSLNSLQQVATGSLQQNPVNSPQQVNMSSLSSQSGTNPVQANLGSLQQNSNALQQSLPKQHEQQMLQNQQLRQQYHHRHMQQQLFQRQQIIQQQQAKQQQTTLLPTHQMSQLQQMTDANDLKIRQQMGIKPGV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="155977" PGL_stop="159138"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="155977" e_stop="156281"/>
            <exon e_start="157739" e_stop="157939"/>
            <exon e_start="158068" e_stop="158156"/>
            <exon e_start="158489" e_stop="158896"/>
            <exon e_start="158964" e_stop="159060"/>
            <exon e_start="159130" e_stop="159138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="0.995"/>
          <exon-intron don_prob="0.812" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.302" e_score="0.917"/>
          <exon-intron don_prob="0.000" acc_prob="0.881" e_score="0.887"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="155977" e_stop="156281" e_length="305"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="156282" i_stop="157738" i_length="1457"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="157739" e_stop="157939" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="157940" i_stop="158067" i_length="128"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="158068" e_stop="158156" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.812" acc_prob="0.982">
            <gDNA_intron_boundary i_start="158157" i_stop="158488" i_length="332"/>
          </intron>
          <exon e_serial="4" e_score="0.917">
            <gDNA_exon_boundary e_start="158489" e_stop="158896" e_length="408"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.302">
            <gDNA_intron_boundary i_start="158897" i_stop="158963" i_length="67"/>
          </intron>
          <exon e_serial="5" e_score="0.887">
            <gDNA_exon_boundary e_start="158964" e_stop="159060" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.881">
            <gDNA_intron_boundary i_start="159061" i_stop="159129" i_length="69"/>
          </intron>
          <exon e_serial="6" e_score="0.778">
            <gDNA_exon_boundary e_start="159130" e_stop="159138" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155977" stop="156281"/>
              <exon start="157739" stop="157939"/>
              <exon start="158068" stop="158156"/>
              <exon start="158489" stop="158715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156068" stop="156281"/>
              <exon start="157739" stop="157939"/>
              <exon start="158068" stop="158140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156129" stop="156281"/>
              <exon start="157739" stop="157939"/>
              <exon start="158068" stop="158156"/>
              <exon start="158489" stop="158714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156139" stop="156281"/>
              <exon start="157739" stop="157939"/>
              <exon start="158068" stop="158156"/>
              <exon start="158489" stop="158556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157817" stop="157939"/>
              <exon start="158068" stop="158156"/>
              <exon start="158489" stop="158702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157888" stop="157939"/>
              <exon start="158068" stop="158156"/>
              <exon start="158489" stop="158896"/>
              <exon start="158964" stop="159060"/>
              <exon start="159130" stop="159138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420861" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTCAGTTCAAGACATCTATTCAGTTGTCAGTATGAATGATAGAATAGCAGGATCTGCTCCAGGAAATGGGTCAAGAGCAGCTGTTGGCGAAGATTTGGTTGCCATGACCAAATGTCGTCTCCAAGCGAGAAACTACTTTACGCAGGATGGACCTACAGGAACAAAGAAAATGAAGCGATATACAACTTCCAACGTTGTGTCGTCAAGCAGCAGTTTGAATGATAGTTTCTGGCAGGTGAATTATTCTGAAACACCTGAGTTAGAGTCAACAGCAACATCCAATGCCAAAAGACCTAAAATAGAG : GTTAATATAGCACTGGTTGAAGAGATACAGAAAATCAATCGGCAACTTATCGACACTGTTGTAGAAATTAGTGACGAAGGTGTTGATCCAAGTGCTCTTGCTGCTGCAACGGAGGGTGGTGAAGGCACTACTGTTAAGTGTTCTTTCACTGCCGTTGCATTGAGTCCAAACTTAAAAGCACTATATGCTTCAGCGCAGATG : TCTCCAATTCAGCCTTTGAGATTGCTCGTTCCAGTTAATTATCCAAACTGCTGTCCGATTTTGTTGGACAAGTTTCCAGTTGAAGTTAG : TAAAGAGTATGAAGATCTATCCACAAAGGCCAAGTCAAGGTTTAGTGTCTCCCTGCGAAGTCTTTCACAGCCAATGTCTCTAAAAGACATAGTCAAGACTTGGGATGTTTGTGCTCGTGCTGTAATTTGTGAATATGCACAACAAAGTGGAGGAGGAACCTTCAGCTCAAAGTATGGGTCTTGGGAGAATTGTTCAACTGCAGCATGATCAAAGACGGAATTATGAGGTTTTCTTCAGCTGCCTTTGGCCTTGCTCTCCTGCTGTTACCTCCTATTTACTGATGGTGATTGCGTAATTGTCGTCTTCTTGAATTGAATGCTGAGATTCATTTTTATATACTGGCTGTTGCTGGATAAGCTTTTGTACCCCCTTGCGTTGTTTGTACTCAAGTGTGTGGATTTTACCTC : GGATAACTGATTTCGGGATAACTTATTCCCCAACCAAACATGCCCTTGGTGAAATTTCAAGGTTTTAAGCATTGTTATTTTTTATGGCTTGTTCATT : GAGGAGGAA</gDNA_template>
            <first_frame> R  Q  F  K  T  S  I  Q  L  S  V  *  M  I  E  *  Q  D  L  L  Q  E  M  G  Q  E  Q  L  L  A  K  I  W  L  P  *  P  N  V  V  S  K  R  E  T  T  L  R  R  M  D  L  Q  E  Q  R  K  *  S  D  I  Q  L  P  T  L  C  R  Q  A  A  V  *  M  I  V  S  G  R  *  I  I  L  K  H  L  S  *  S  Q  Q  Q  H  P  M  P  K  D  L  K  *  R :   L  I  *  H  W  L  K  R  Y  R  K  S  I  G  N  L  S  T  L  L  *  K  L  V  T  K  V  L  I  Q  V  L  L  L  L  Q  R  R  V  V  K  A  L  L  L  S  V  L  S  L  P  L  H  *  V  Q  T  *  K  H  Y  M  L  Q  R  R  C :   L  Q  F  S  L  *  D  C  S  F  Q  L  I  I  Q  T  A  V  R  F  C  W  T  S  F  Q  L  K  L   : V  K  S  M  K  I  Y  P  Q  R  P  S  Q  G  L  V  S  P  C  E  V  F  H  S  Q  C  L  *  K  T  *  S  R  L  G  M  F  V  L  V  L  *  F  V  N  M  H  N  K  V  E  E  E  P  S  A  Q  S  M  G  L  G  R  I  V  Q  L  Q  H  D  Q  R  R  N  Y  E  V  F  F  S  C  L  W  P  C  S  P  A  V  T  S  Y  L  L  M  V  I  A  *  L  S  S  S  *  I  E  C  *  D  S  F  L  Y  T  G  C  C  W  I  S  F  C  T  P  L  R  C  L  Y  S  S  V  W  I  L  P   : R  I  T  D  F  G  I  T  Y  S  P  T  K  H  A  L  G  E  I  S  R  F  *  A  L  L  F  F  M  A  C  S  L :   R  R   </first_frame>
            <second_frame>  V  S  S  R  H  L  F  S  C  Q  Y  E  *  *  N  S  R  I  C  S  R  K  W  V  K  S  S  C  W  R  R  F  G  C  H  D  Q  M  S  S  P  S  E  K  L  L  Y  A  G  W  T  Y  R  N  K  E  N  E  A  I  Y  N  F  Q  R  C  V  V  K  Q  Q  F  E  *  *  F  L  A  G  E  L  F  *  N  T  *  V  R  V  N  S  N  I  Q  C  Q  K  T  *  N  R   : G  *  Y  S  T  G  *  R  D  T  E  N  Q  S  A  T  Y  R  H  C  C  R  N  *  *  R  R  C  *  S  K  C  S  C  C  C  N  G  G  W  *  R  H  Y  C  *  V  F  F  H  C  R  C  I  E  S  K  L  K  S  T  I  C  F  S  A  D   : V  S  N  S  A  F  E  I  A  R  S  S  *  L  S  K  L  L  S  D  F  V  G  Q  V  S  S  *  S  *  :  *  R  V  *  R  S  I  H  K  G  Q  V  K  V  *  C  L  P  A  K  S  F  T  A  N  V  S  K  R  H  S  Q  D  L  G  C  L  C  S  C  C  N  L  *  I  C  T  T  K  W  R  R  N  L  Q  L  K  V  W  V  L  G  E  L  F  N  C  S  M  I  K  D  G  I  M  R  F  S  S  A  A  F  G  L  A  L  L  L  L  P  P  I  Y  *  W  *  L  R  N  C  R  L  L  E  L  N  A  E  I  H  F  Y  I  L  A  V  A  G  *  A  F  V  P  P  C  V  V  C  T  Q  V  C  G  F  Y  L  :  G  *  L  I  S  G  *  L  I  P  Q  P  N  M  P  L  V  K  F  Q  G  F  K  H  C  Y  F  L  W  L  V  H   : *  G  G  </second_frame>
            <third_frame>   S  V  Q  D  I  Y  S  V  V  S  M  N  D  R  I  A  G  S  A  P  G  N  G  S  R  A  A  V  G  E  D  L  V  A  M  T  K  C  R  L  Q  A  R  N  Y  F  T  Q  D  G  P  T  G  T  K  K  M  K  R  Y  T  T  S  N  V  V  S  S  S  S  S  L  N  D  S  F  W  Q  V  N  Y  S  E  T  P  E  L  E  S  T  A  T  S  N  A  K  R  P  K  I  E  :  V  N  I  A  L  V  E  E  I  Q  K  I  N  R  Q  L  I  D  T  V  V  E  I  S  D  E  G  V  D  P  S  A  L  A  A  A  T  E  G  G  E  G  T  T  V  K  C  S  F  T  A  V  A  L  S  P  N  L  K  A  L  Y  A  S  A  Q  M  :  S  P  I  Q  P  L  R  L  L  V  P  V  N  Y  P  N  C  C  P  I  L  L  D  K  F  P  V  E  V  S :   K  E  Y  E  D  L  S  T  K  A  K  S  R  F  S  V  S  L  R  S  L  S  Q  P  M  S  L  K  D  I  V  K  T  W  D  V  C  A  R  A  V  I  C  E  Y  A  Q  Q  S  G  G  G  T  F  S  S  K  Y  G  S  W  E  N  C  S  T  A  A  *  S  K  T  E  L  *  G  F  L  Q  L  P  L  A  L  L  S  C  C  Y  L  L  F  T  D  G  D  C  V  I  V  V  F  L  N  *  M  L  R  F  I  F  I  Y  W  L  L  L  D  K  L  L  Y  P  L  A  L  F  V  L  K  C  V  D  F  T  S :   D  N  *  F  R  D  N  L  F  P  N  Q  T  C  P  W  *  N  F  K  V  L  S  I  V  I  F  Y  G  L  F  I  :  E  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="155979" stop="156281"/>
                    <exon start="157739" stop="157939"/>
                    <exon start="158068" stop="158156"/>
                    <exon start="158489" stop="158696"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVQDIYSVVSMNDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNYFTQDGPTGTKKMKRYTTSNVVSSSSSLNDSFWQVNYSETPELESTATSNAKRPKIEVNIALVEEIQKINRQLIDTVVEISDEGVDPSALAAATEGGEGTTVKCSFTAVALSPNLKALYASAQMSPIQPLRLLVPVNYPNCCPILLDKFPVEVSKEYEDLSTKAKSRFSVSLRSLSQPMSLKDIVKTWDVCARAVICEYAQQSGGGTFSSKYGSWENCSTAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="161686" PGL_stop="167786"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="161686" e_stop="161763"/>
            <exon e_start="162204" e_stop="162303"/>
            <exon e_start="163628" e_stop="163755"/>
            <exon e_start="163831" e_stop="163984"/>
            <exon e_start="164132" e_stop="164241"/>
            <exon e_start="165362" e_stop="165445"/>
            <exon e_start="165528" e_stop="165576"/>
            <exon e_start="165697" e_stop="165788"/>
            <exon e_start="166879" e_stop="167011"/>
            <exon e_start="167177" e_stop="167786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.966"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.763" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.478" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.462" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.975" e_score="0.978"/>
          <exon-intron don_prob="0.000" acc_prob="0.960" e_score="0.962"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="161686" e_stop="161763" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="161764" i_stop="162203" i_length="440"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="162204" e_stop="162303" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="162304" i_stop="163627" i_length="1324"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="163628" e_stop="163755" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.763" acc_prob="0.994">
            <gDNA_intron_boundary i_start="163756" i_stop="163830" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="163831" e_stop="163984" e_length="154"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.838">
            <gDNA_intron_boundary i_start="163985" i_stop="164131" i_length="147"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="164132" e_stop="164241" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.478" acc_prob="0.999">
            <gDNA_intron_boundary i_start="164242" i_stop="165361" i_length="1120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="165362" e_stop="165445" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.986">
            <gDNA_intron_boundary i_start="165446" i_stop="165527" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="165528" e_stop="165576" e_length="49"/>
          </exon>
          <intron i_serial="7" don_prob="0.462" acc_prob="0.883">
            <gDNA_intron_boundary i_start="165577" i_stop="165696" i_length="120"/>
          </intron>
          <exon e_serial="8" e_score="0.978">
            <gDNA_exon_boundary e_start="165697" e_stop="165788" e_length="92"/>
          </exon>
          <intron i_serial="8" don_prob="0.962" acc_prob="0.975">
            <gDNA_intron_boundary i_start="165789" i_stop="166878" i_length="1090"/>
          </intron>
          <exon e_serial="9" e_score="0.962">
            <gDNA_exon_boundary e_start="166879" e_stop="167011" e_length="133"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="167012" i_stop="167176" i_length="165"/>
          </intron>
          <exon e_serial="10" e_score="0.952">
            <gDNA_exon_boundary e_start="167177" e_stop="167786" e_length="610"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161686" stop="161763"/>
              <exon start="162204" stop="162303"/>
              <exon start="163628" stop="163755"/>
              <exon start="163831" stop="163984"/>
              <exon start="164132" stop="164241"/>
              <exon start="165362" stop="165445"/>
              <exon start="165528" stop="165576"/>
              <exon start="165697" stop="165734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161691" stop="161763"/>
              <exon start="162204" stop="162303"/>
              <exon start="163628" stop="163755"/>
              <exon start="163831" stop="163984"/>
              <exon start="164132" stop="164241"/>
              <exon start="165362" stop="165407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161694" stop="161763"/>
              <exon start="162204" stop="162303"/>
              <exon start="163628" stop="163755"/>
              <exon start="163831" stop="163984"/>
              <exon start="164132" stop="164241"/>
              <exon start="165362" stop="165445"/>
              <exon start="165528" stop="165576"/>
              <exon start="165697" stop="165782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161695" stop="161763"/>
              <exon start="162204" stop="162303"/>
              <exon start="163628" stop="163755"/>
              <exon start="163831" stop="163918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161706" stop="161763"/>
              <exon start="162204" stop="162303"/>
              <exon start="163628" stop="163755"/>
              <exon start="163831" stop="163984"/>
              <exon start="164132" stop="164155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="165440" stop="165445"/>
              <exon start="165528" stop="165576"/>
              <exon start="165697" stop="165788"/>
              <exon start="166879" stop="167011"/>
              <exon start="167177" stop="167483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="165440" stop="165445"/>
              <exon start="165528" stop="165576"/>
              <exon start="165697" stop="165788"/>
              <exon start="166879" stop="167011"/>
              <exon start="167177" stop="167430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="166939" stop="167011"/>
              <exon start="167177" stop="167786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="166939" stop="167011"/>
              <exon start="167177" stop="167568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421330" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTTGGTTTTTCGCCTCTCTCTCTCTCTCCTCTTTCTCTCTCTTTCTGCCTTTCTCTTCATCAGAAAAAAGTTCACT : GGCAATCATGAGCAACGAAGAAGAGAAAAGATGTCCTCTGTGTGCTGAAGAGATGGACTGGACAGATCAGCAGTTTAAGCCTTGCAAATGTGGTTATCAG : GTGTGTCTTTGGTGTTGGCATCACATAATGGACATGGCAGAAAAAGATGAGTCAGAGGGACGATGTCCTGCATGTCGAACAACATACGAAAAGGAGAAAGTTGTTAGAATGCAAACAAATATTGAGAG : GGCAGGGAACAACAATGCCAATAGGAAAAGCAAACAACAACCAAAGGCAAAGCCAAAAACTAATGAAGCCAAGAAGGATCTCACGAATGTTCGGGTCATTCAACGTAAAATGGCATATGTGATTGGCCTGCCTCTAAGTCTTGCAGATGAAGAT : CTTTTACAGCGGAAGGAATATTTTGGGCAGTATGGAAAAGTTACCAAAATTTCTCTCTCTAGGACAACTGGTGGTGCCATCCAGCAATTTGTTAATGATACTTGTAGTGT : ATATATTACATATTCAAAAGAAGAGGAGGCCGTGCGGTGTATTCAGTTTGTACATGGTTTTGTCTTGGAAGATAGATATTTGAG : AGCATCATTTGGGACTGCAAAATACTGCCATGCGTGGTTGAGAAACACG : CCTTGCAGTAATCCGTCTTGTCTATATTTGCATAGCATTGGTGCTGATGAAGATAGCTTTGGCAAAGATGACGTAGCTGCGATTCATACAAG : GAATAGAGTTCAACAAATAGCTGGTGACGCCAGTAATATGATGAATCGTTCAGGAAATGTCTTGCCACCTCCAATTGATGAATTATCTAGCACTGGCTTTACATTGACTGAGACATCTAGCATTAGAAATGCT : GATGCATCAAATGATACAGTGAATTACAGTAGCTACATGGCTCATGTAGTTCCTCATGATAAGGATGGAGACGCTGGTGGACCAAACAGAATGACAACGTTTGTTGATATTGTTGGACGGTACAATACTTCTGGTGCAGAGAGCGATGGAAATAGCACGGAAGATTGTAGGATTTTGAATTTATCTTCTGACCTATCTTCAGTAACCATTAGTAAAGATAATCATAGACATGAAAAATATCCTGATAAAACTTTGTTCAAGGTTCCATCTTCAAATCACATTGTCAATCATCCGCGAGGCAACCTAAATTTTGTTGAATTTTCAGATGAACCTTACAGGGAAGATTATACATCTTTTGACAGTCAAGGACTGAAGGATCCAAATAACATGGATCAAAAGGCTTTTCTTATGCCATCTTGTTCTACTCAATCCACAGAGAACTCTGGTAGTCGTTTATTAGTACCTACGCCATGTAGTCTGAGTAGCAATGGAATGGATTATGGAGCTTTACATAATCAAGTGGATGAAGCTTCTCTGCCACATTCATGTGTAAATGCGATATTAAATGAAGGACTTCATGACTTGAAGTTCCAAAGTTCTGTCAAATCTG</gDNA_template>
            <first_frame> K  L  V  F  R  L  S  L  S  L  L  F  L  S  L  S  A  F  L  F  I  R  K  K  F  T  :  G  N  H  E  Q  R  R  R  E  K  M  S  S  V  C  *  R  D  G  L  D  R  S  A  V  *  A  L  Q  M  W  L  S   : G  V  S  L  V  L  A  S  H  N  G  H  G  R  K  R  *  V  R  G  T  M  S  C  M  S  N  N  I  R  K  G  E  S  C  *  N  A  N  K  Y  *  E  :  G  R  E  Q  Q  C  Q  *  E  K  Q  T  T  T  K  G  K  A  K  N  *  *  S  Q  E  G  S  H  E  C  S  G  H  S  T  *  N  G  I  C  D  W  P  A  S  K  S  C  R  *  R   : S  F  T  A  E  G  I  F  W  A  V  W  K  S  Y  Q  N  F  S  L  *  D  N  W  W  C  H  P  A  I  C  *  *  Y  L  *  C  :  I  Y  Y  I  F  K  R  R  G  G  R  A  V  Y  S  V  C  T  W  F  C  L  G  R  *  I  F  E  :  S  I  I  W  D  C  K  I  L  P  C  V  V  E  K  H   : A  L  Q  *  S  V  L  S  I  F  A  *  H  W  C  *  *  R  *  L  W  Q  R  *  R  S  C  D  S  Y  K  :  E  *  S  S  T  N  S  W  *  R  Q  *  Y  D  E  S  F  R  K  C  L  A  T  S  N  *  *  I  I  *  H  W  L  Y  I  D  *  D  I  *  H  *  K  C   : *  C  I  K  *  Y  S  E  L  Q  *  L  H  G  S  C  S  S  S  *  *  G  W  R  R  W  W  T  K  Q  N  D  N  V  C  *  Y  C  W  T  V  Q  Y  F  W  C  R  E  R  W  K  *  H  G  R  L  *  D  F  E  F  I  F  *  P  I  F  S  N  H  *  *  R  *  S  *  T  *  K  I  S  *  *  N  F  V  Q  G  S  I  F  K  S  H  C  Q  S  S  A  R  Q  P  K  F  C  *  I  F  R  *  T  L  Q  G  R  L  Y  I  F  *  Q  S  R  T  E  G  S  K  *  H  G  S  K  G  F  S  Y  A  I  L  F  Y  S  I  H  R  E  L  W  *  S  F  I  S  T  Y  A  M  *  S  E  *  Q  W  N  G  L  W  S  F  T  *  S  S  G  *  S  F  S  A  T  F  M  C  K  C  D  I  K  *  R  T  S  *  L  E  V  P  K  F  C  Q  I   </first_frame>
            <second_frame>  S  W  F  F  A  S  L  S  L  S  S  F  S  L  F  L  P  F  S  S  S  E  K  S  S  L :   A  I  M  S  N  E  E  E  K  R  C  P  L  C  A  E  E  M  D  W  T  D  Q  Q  F  K  P  C  K  C  G  Y  Q  :  V  C  L  W  C  W  H  H  I  M  D  M  A  E  K  D  E  S  E  G  R  C  P  A  C  R  T  T  Y  E  K  E  K  V  V  R  M  Q  T  N  I  E  R :   A  G  N  N  N  A  N  R  K  S  K  Q  Q  P  K  A  K  P  K  T  N  E  A  K  K  D  L  T  N  V  R  V  I  Q  R  K  M  A  Y  V  I  G  L  P  L  S  L  A  D  E  D  :  L  L  Q  R  K  E  Y  F  G  Q  Y  G  K  V  T  K  I  S  L  S  R  T  T  G  G  A  I  Q  Q  F  V  N  D  T  C  S  V :   Y  I  T  Y  S  K  E  E  E  A  V  R  C  I  Q  F  V  H  G  F  V  L  E  D  R  Y  L  R :   A  S  F  G  T  A  K  Y  C  H  A  W  L  R  N  T  :  P  C  S  N  P  S  C  L  Y  L  H  S  I  G  A  D  E  D  S  F  G  K  D  D  V  A  A  I  H  T  R :   N  R  V  Q  Q  I  A  G  D  A  S  N  M  M  N  R  S  G  N  V  L  P  P  P  I  D  E  L  S  S  T  G  F  T  L  T  E  T  S  S  I  R  N  A  :  D  A  S  N  D  T  V  N  Y  S  S  Y  M  A  H  V  V  P  H  D  K  D  G  D  A  G  G  P  N  R  M  T  T  F  V  D  I  V  G  R  Y  N  T  S  G  A  E  S  D  G  N  S  T  E  D  C  R  I  L  N  L  S  S  D  L  S  S  V  T  I  S  K  D  N  H  R  H  E  K  Y  P  D  K  T  L  F  K  V  P  S  S  N  H  I  V  N  H  P  R  G  N  L  N  F  V  E  F  S  D  E  P  Y  R  E  D  Y  T  S  F  D  S  Q  G  L  K  D  P  N  N  M  D  Q  K  A  F  L  M  P  S  C  S  T  Q  S  T  E  N  S  G  S  R  L  L  V  P  T  P  C  S  L  S  S  N  G  M  D  Y  G  A  L  H  N  Q  V  D  E  A  S  L  P  H  S  C  V  N  A  I  L  N  E  G  L  H  D  L  K  F  Q  S  S  V  K  S  </second_frame>
            <third_frame>   V  G  F  S  P  L  S  L  S  P  L  S  L  S  F  C  L  S  L  H  Q  K  K  V  H   : W  Q  S  *  A  T  K  K  R  K  D  V  L  C  V  L  K  R  W  T  G  Q  I  S  S  L  S  L  A  N  V  V  I  R :   C  V  F  G  V  G  I  T  *  W  T  W  Q  K  K  M  S  Q  R  D  D  V  L  H  V  E  Q  H  T  K  R  R  K  L  L  E  C  K  Q  I  L  R   : G  Q  G  T  T  M  P  I  G  K  A  N  N  N  Q  R  Q  S  Q  K  L  M  K  P  R  R  I  S  R  M  F  G  S  F  N  V  K  W  H  M  *  L  A  C  L  *  V  L  Q  M  K  I :   F  Y  S  G  R  N  I  L  G  S  M  E  K  L  P  K  F  L  S  L  G  Q  L  V  V  P  S  S  N  L  L  M  I  L  V  V   : Y  I  L  H  I  Q  K  K  R  R  P  C  G  V  F  S  L  Y  M  V  L  S  W  K  I  D  I  *   : E  H  H  L  G  L  Q  N  T  A  M  R  G  *  E  T  R :   L  A  V  I  R  L  V  Y  I  C  I  A  L  V  L  M  K  I  A  L  A  K  M  T  *  L  R  F  I  Q   : G  I  E  F  N  K  *  L  V  T  P  V  I  *  *  I  V  Q  E  M  S  C  H  L  Q  L  M  N  Y  L  A  L  A  L  H  *  L  R  H  L  A  L  E  M  L :   M  H  Q  M  I  Q  *  I  T  V  A  T  W  L  M  *  F  L  M  I  R  M  E  T  L  V  D  Q  T  E  *  Q  R  L  L  I  L  L  D  G  T  I  L  L  V  Q  R  A  M  E  I  A  R  K  I  V  G  F  *  I  Y  L  L  T  Y  L  Q  *  P  L  V  K  I  I  I  D  M  K  N  I  L  I  K  L  C  S  R  F  H  L  Q  I  T  L  S  I  I  R  E  A  T  *  I  L  L  N  F  Q  M  N  L  T  G  K  I  I  H  L  L  T  V  K  D  *  R  I  Q  I  T  W  I  K  R  L  F  L  C  H  L  V  L  L  N  P  Q  R  T  L  V  V  V  Y  *  Y  L  R  H  V  V  *  V  A  M  E  W  I  M  E  L  Y  I  I  K  W  M  K  L  L  C  H  I  H  V  *  M  R  Y  *  M  K  D  F  M  T  *  S  S  K  V  L  S  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="161687" stop="161763"/>
                    <exon start="162204" stop="162303"/>
                    <exon start="163628" stop="163755"/>
                    <exon start="163831" stop="163984"/>
                    <exon start="164132" stop="164241"/>
                    <exon start="165362" stop="165445"/>
                    <exon start="165528" stop="165576"/>
                    <exon start="165697" stop="165788"/>
                    <exon start="166879" stop="167011"/>
                    <exon start="167177" stop="167785"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1536</number_coding_nucleotides>
                  <number_encoded_amino_acids>512</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWFFASLSLSSFSLFLPFSSSEKSSLAIMSNEEEKRCPLCAEEMDWTDQQFKPCKCGYQVCLWCWHHIMDMAEKDESEGRCPACRTTYEKEKVVRMQTNIERAGNNNANRKSKQQPKAKPKTNEAKKDLTNVRVIQRKMAYVIGLPLSLADEDLLQRKEYFGQYGKVTKISLSRTTGGAIQQFVNDTCSVYITYSKEEEAVRCIQFVHGFVLEDRYLRASFGTAKYCHAWLRNTPCSNPSCLYLHSIGADEDSFGKDDVAAIHTRNRVQQIAGDASNMMNRSGNVLPPPIDELSSTGFTLTETSSIRNADASNDTVNYSSYMAHVVPHDKDGDAGGPNRMTTFVDIVGRYNTSGAESDGNSTEDCRILNLSSDLSSVTISKDNHRHEKYPDKTLFKVPSSNHIVNHPRGNLNFVEFSDEPYREDYTSFDSQGLKDPNNMDQKAFLMPSCSTQSTENSGSRLLVPTPCSLSSNGMDYGALHNQVDEASLPHSCVNAILNEGLHDLKFQSSVKS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="161686" e_stop="161763"/>
            <exon e_start="162204" e_stop="162303"/>
            <exon e_start="163628" e_stop="163755"/>
            <exon e_start="163831" e_stop="163984"/>
            <exon e_start="164132" e_stop="164241"/>
            <exon e_start="165362" e_stop="165445"/>
            <exon e_start="165528" e_stop="165576"/>
            <exon e_start="165697" e_stop="165788"/>
            <exon e_start="166879" e_stop="167017"/>
            <exon e_start="167177" e_stop="167509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.966"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.763" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.478" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.462" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="161686" e_stop="161763" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="161764" i_stop="162203" i_length="440"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="162204" e_stop="162303" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="162304" i_stop="163627" i_length="1324"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="163628" e_stop="163755" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.763" acc_prob="0.994">
            <gDNA_intron_boundary i_start="163756" i_stop="163830" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="163831" e_stop="163984" e_length="154"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.838">
            <gDNA_intron_boundary i_start="163985" i_stop="164131" i_length="147"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="164132" e_stop="164241" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.478" acc_prob="0.999">
            <gDNA_intron_boundary i_start="164242" i_stop="165361" i_length="1120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="165362" e_stop="165445" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.986">
            <gDNA_intron_boundary i_start="165446" i_stop="165527" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="165528" e_stop="165576" e_length="49"/>
          </exon>
          <intron i_serial="7" don_prob="0.462" acc_prob="0.883">
            <gDNA_intron_boundary i_start="165577" i_stop="165696" i_length="120"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="165697" e_stop="165788" e_length="92"/>
          </exon>
          <intron i_serial="8" don_prob="0.962" acc_prob="0.975">
            <gDNA_intron_boundary i_start="165789" i_stop="166878" i_length="1090"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="166879" e_stop="167017" e_length="139"/>
          </exon>
          <intron i_serial="9" don_prob="0.954" acc_prob="0.960">
            <gDNA_intron_boundary i_start="167018" i_stop="167176" i_length="159"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="167177" e_stop="167509" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161686" stop="161763"/>
              <exon start="162204" stop="162303"/>
              <exon start="163628" stop="163755"/>
              <exon start="163831" stop="163984"/>
              <exon start="164132" stop="164241"/>
              <exon start="165362" stop="165445"/>
              <exon start="165528" stop="165576"/>
              <exon start="165697" stop="165734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161691" stop="161763"/>
              <exon start="162204" stop="162303"/>
              <exon start="163628" stop="163755"/>
              <exon start="163831" stop="163984"/>
              <exon start="164132" stop="164241"/>
              <exon start="165362" stop="165407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161694" stop="161763"/>
              <exon start="162204" stop="162303"/>
              <exon start="163628" stop="163755"/>
              <exon start="163831" stop="163984"/>
              <exon start="164132" stop="164241"/>
              <exon start="165362" stop="165445"/>
              <exon start="165528" stop="165576"/>
              <exon start="165697" stop="165782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161695" stop="161763"/>
              <exon start="162204" stop="162303"/>
              <exon start="163628" stop="163755"/>
              <exon start="163831" stop="163918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="161706" stop="161763"/>
              <exon start="162204" stop="162303"/>
              <exon start="163628" stop="163755"/>
              <exon start="163831" stop="163984"/>
              <exon start="164132" stop="164155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="163928" stop="163984"/>
              <exon start="164132" stop="164241"/>
              <exon start="165362" stop="165445"/>
              <exon start="165528" stop="165576"/>
              <exon start="165697" stop="165788"/>
              <exon start="166879" stop="167017"/>
              <exon start="167177" stop="167509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739089" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTTGGTTTTTCGCCTCTCTCTCTCTCTCCTCTTTCTCTCTCTTTCTGCCTTTCTCTTCATCAGAAAAAAGTTCACT : GGCAATCATGAGCAACGAAGAAGAGAAAAGATGTCCTCTGTGTGCTGAAGAGATGGACTGGACAGATCAGCAGTTTAAGCCTTGCAAATGTGGTTATCAG : GTGTGTCTTTGGTGTTGGCATCACATAATGGACATGGCAGAAAAAGATGAGTCAGAGGGACGATGTCCTGCATGTCGAACAACATACGAAAAGGAGAAAGTTGTTAGAATGCAAACAAATATTGAGAG : GGCAGGGAACAACAATGCCAATAGGAAAAGCAAACAACAACCAAAGGCAAAGCCAAAAACTAATGAAGCCAAGAAGGATCTCACGAATGTTCGGGTCATTCAACGTAAAATGGCATATGTGATTGGCCTGCCTCTAAGTCTTGCAGATGAAGAT : CTTTTACAGCGGAAGGAATATTTTGGGCAGTATGGAAAAGTTACCAAAATTTCTCTCTCTAGGACAACTGGTGGTGCCATCCAGCAATTTGTTAATGATACTTGTAGTGT : ATATATTACATATTCAAAAGAAGAGGAGGCCGTGCGGTGTATTCAGTTTGTACATGGTTTTGTCTTGGAAGATAGATATTTGAG : AGCATCATTTGGGACTGCAAAATACTGCCATGCGTGGTTGAGAAACACG : CCTTGCAGTAATCCGTCTTGTCTATATTTGCATAGCATTGGTGCTGATGAAGATAGCTTTGGCAAAGATGACGTAGCTGCGATTCATACAAG : GAATAGAGTTCAACAAATAGCTGGTGACGCCAGTAATATGATGAATCGTTCAGGAAATGTCTTGCCACCTCCAATTGATGAATTATCTAGCACTGGCTTTACATTGACTGAGACATCTAGCATTAGAAATGCTGCAAGT : GATGCATCAAATGATACAGTGAATTACAGTAGCTACATGGCTCATGTAGTTCCTCATGATAAGGATGGAGACGCTGGTGGACCAAACAGAATGACAACGTTTGTTGATATTGTTGGACGGTACAATACTTCTGGTGCAGAGAGCGATGGAAATAGCACGGAAGATTGTAGGATTTTGAATTTATCTTCTGACCTATCTTCAGTAACCATTAGTAAAGATAATCATAGACATGAAAAATATCCTGATAAAACTTTGTTCAAGGTTCCATCTTCAAATCACATTGTCAATCATCCGCGAGGCAACCTAAATTTTGTTGAATTTTCAGATGAACCT</gDNA_template>
            <first_frame> K  L  V  F  R  L  S  L  S  L  L  F  L  S  L  S  A  F  L  F  I  R  K  K  F  T  :  G  N  H  E  Q  R  R  R  E  K  M  S  S  V  C  *  R  D  G  L  D  R  S  A  V  *  A  L  Q  M  W  L  S   : G  V  S  L  V  L  A  S  H  N  G  H  G  R  K  R  *  V  R  G  T  M  S  C  M  S  N  N  I  R  K  G  E  S  C  *  N  A  N  K  Y  *  E  :  G  R  E  Q  Q  C  Q  *  E  K  Q  T  T  T  K  G  K  A  K  N  *  *  S  Q  E  G  S  H  E  C  S  G  H  S  T  *  N  G  I  C  D  W  P  A  S  K  S  C  R  *  R   : S  F  T  A  E  G  I  F  W  A  V  W  K  S  Y  Q  N  F  S  L  *  D  N  W  W  C  H  P  A  I  C  *  *  Y  L  *  C  :  I  Y  Y  I  F  K  R  R  G  G  R  A  V  Y  S  V  C  T  W  F  C  L  G  R  *  I  F  E  :  S  I  I  W  D  C  K  I  L  P  C  V  V  E  K  H   : A  L  Q  *  S  V  L  S  I  F  A  *  H  W  C  *  *  R  *  L  W  Q  R  *  R  S  C  D  S  Y  K  :  E  *  S  S  T  N  S  W  *  R  Q  *  Y  D  E  S  F  R  K  C  L  A  T  S  N  *  *  I  I  *  H  W  L  Y  I  D  *  D  I  *  H  *  K  C  C  K   : *  C  I  K  *  Y  S  E  L  Q  *  L  H  G  S  C  S  S  S  *  *  G  W  R  R  W  W  T  K  Q  N  D  N  V  C  *  Y  C  W  T  V  Q  Y  F  W  C  R  E  R  W  K  *  H  G  R  L  *  D  F  E  F  I  F  *  P  I  F  S  N  H  *  *  R  *  S  *  T  *  K  I  S  *  *  N  F  V  Q  G  S  I  F  K  S  H  C  Q  S  S  A  R  Q  P  K  F  C  *  I  F  R  *  T  </first_frame>
            <second_frame>  S  W  F  F  A  S  L  S  L  S  S  F  S  L  F  L  P  F  S  S  S  E  K  S  S  L :   A  I  M  S  N  E  E  E  K  R  C  P  L  C  A  E  E  M  D  W  T  D  Q  Q  F  K  P  C  K  C  G  Y  Q  :  V  C  L  W  C  W  H  H  I  M  D  M  A  E  K  D  E  S  E  G  R  C  P  A  C  R  T  T  Y  E  K  E  K  V  V  R  M  Q  T  N  I  E  R :   A  G  N  N  N  A  N  R  K  S  K  Q  Q  P  K  A  K  P  K  T  N  E  A  K  K  D  L  T  N  V  R  V  I  Q  R  K  M  A  Y  V  I  G  L  P  L  S  L  A  D  E  D  :  L  L  Q  R  K  E  Y  F  G  Q  Y  G  K  V  T  K  I  S  L  S  R  T  T  G  G  A  I  Q  Q  F  V  N  D  T  C  S  V :   Y  I  T  Y  S  K  E  E  E  A  V  R  C  I  Q  F  V  H  G  F  V  L  E  D  R  Y  L  R :   A  S  F  G  T  A  K  Y  C  H  A  W  L  R  N  T  :  P  C  S  N  P  S  C  L  Y  L  H  S  I  G  A  D  E  D  S  F  G  K  D  D  V  A  A  I  H  T  R :   N  R  V  Q  Q  I  A  G  D  A  S  N  M  M  N  R  S  G  N  V  L  P  P  P  I  D  E  L  S  S  T  G  F  T  L  T  E  T  S  S  I  R  N  A  A  S  :  D  A  S  N  D  T  V  N  Y  S  S  Y  M  A  H  V  V  P  H  D  K  D  G  D  A  G  G  P  N  R  M  T  T  F  V  D  I  V  G  R  Y  N  T  S  G  A  E  S  D  G  N  S  T  E  D  C  R  I  L  N  L  S  S  D  L  S  S  V  T  I  S  K  D  N  H  R  H  E  K  Y  P  D  K  T  L  F  K  V  P  S  S  N  H  I  V  N  H  P  R  G  N  L  N  F  V  E  F  S  D  E  P </second_frame>
            <third_frame>   V  G  F  S  P  L  S  L  S  P  L  S  L  S  F  C  L  S  L  H  Q  K  K  V  H   : W  Q  S  *  A  T  K  K  R  K  D  V  L  C  V  L  K  R  W  T  G  Q  I  S  S  L  S  L  A  N  V  V  I  R :   C  V  F  G  V  G  I  T  *  W  T  W  Q  K  K  M  S  Q  R  D  D  V  L  H  V  E  Q  H  T  K  R  R  K  L  L  E  C  K  Q  I  L  R   : G  Q  G  T  T  M  P  I  G  K  A  N  N  N  Q  R  Q  S  Q  K  L  M  K  P  R  R  I  S  R  M  F  G  S  F  N  V  K  W  H  M  *  L  A  C  L  *  V  L  Q  M  K  I :   F  Y  S  G  R  N  I  L  G  S  M  E  K  L  P  K  F  L  S  L  G  Q  L  V  V  P  S  S  N  L  L  M  I  L  V  V   : Y  I  L  H  I  Q  K  K  R  R  P  C  G  V  F  S  L  Y  M  V  L  S  W  K  I  D  I  *   : E  H  H  L  G  L  Q  N  T  A  M  R  G  *  E  T  R :   L  A  V  I  R  L  V  Y  I  C  I  A  L  V  L  M  K  I  A  L  A  K  M  T  *  L  R  F  I  Q   : G  I  E  F  N  K  *  L  V  T  P  V  I  *  *  I  V  Q  E  M  S  C  H  L  Q  L  M  N  Y  L  A  L  A  L  H  *  L  R  H  L  A  L  E  M  L  Q  V :   M  H  Q  M  I  Q  *  I  T  V  A  T  W  L  M  *  F  L  M  I  R  M  E  T  L  V  D  Q  T  E  *  Q  R  L  L  I  L  L  D  G  T  I  L  L  V  Q  R  A  M  E  I  A  R  K  I  V  G  F  *  I  Y  L  L  T  Y  L  Q  *  P  L  V  K  I  I  I  D  M  K  N  I  L  I  K  L  C  S  R  F  H  L  Q  I  T  L  S  I  I  R  E  A  T  *  I  L  L  N  F  Q  M  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="161687" stop="161763"/>
                    <exon start="162204" stop="162303"/>
                    <exon start="163628" stop="163755"/>
                    <exon start="163831" stop="163984"/>
                    <exon start="164132" stop="164241"/>
                    <exon start="165362" stop="165445"/>
                    <exon start="165528" stop="165576"/>
                    <exon start="165697" stop="165788"/>
                    <exon start="166879" stop="167017"/>
                    <exon start="167177" stop="167509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1266</number_coding_nucleotides>
                  <number_encoded_amino_acids>422</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWFFASLSLSSFSLFLPFSSSEKSSLAIMSNEEEKRCPLCAEEMDWTDQQFKPCKCGYQVCLWCWHHIMDMAEKDESEGRCPACRTTYEKEKVVRMQTNIERAGNNNANRKSKQQPKAKPKTNEAKKDLTNVRVIQRKMAYVIGLPLSLADEDLLQRKEYFGQYGKVTKISLSRTTGGAIQQFVNDTCSVYITYSKEEEAVRCIQFVHGFVLEDRYLRASFGTAKYCHAWLRNTPCSNPSCLYLHSIGADEDSFGKDDVAAIHTRNRVQQIAGDASNMMNRSGNVLPPPIDELSSTGFTLTETSSIRNAASDASNDTVNYSSYMAHVVPHDKDGDAGGPNRMTTFVDIVGRYNTSGAESDGNSTEDCRILNLSSDLSSVTISKDNHRHEKYPDKTLFKVPSSNHIVNHPRGNLNFVEFSDEP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="167883" PGL_stop="169445"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="167883" e_stop="168200"/>
            <exon e_start="168777" e_stop="168887"/>
            <exon e_start="169024" e_stop="169445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.896" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="167883" e_stop="168200" e_length="318"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.896">
            <gDNA_intron_boundary i_start="168201" i_stop="168776" i_length="576"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="168777" e_stop="168887" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.968">
            <gDNA_intron_boundary i_start="168888" i_stop="169023" i_length="136"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="169024" e_stop="169445" e_length="422"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="167883" stop="168200"/>
              <exon start="168777" stop="168887"/>
              <exon start="169024" stop="169445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="167932" stop="168200"/>
              <exon start="168777" stop="168887"/>
              <exon start="169024" stop="169378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="167932" stop="168200"/>
              <exon start="168777" stop="168887"/>
              <exon start="169024" stop="169315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="167933" stop="168200"/>
              <exon start="168777" stop="168887"/>
              <exon start="169024" stop="169197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="168055" stop="168200"/>
              <exon start="168777" stop="168887"/>
              <exon start="169024" stop="169126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="168069" stop="168200"/>
              <exon start="168777" stop="168887"/>
              <exon start="169024" stop="169271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362463" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCATTCAATGCCATAGAAAGCAGTGTTATTTCAAATATTATGTCAAAGGACTTGAATTCATGTGATGATTCAATGGCCTTGCGTCGTAGTTTTGTTGGCTCGTATGGTGAGTCTGTTGGGAAGCATGGTGCTTCCTGGAACTCTTTGCACAGCGACCAATTAGGGTTCTCTTTTGTGAAGCAAGATGACTTTTCCTGGCAAGGAGGTGATTTGGAGTCGTCTTTTAGAAATATTGGTCAGATATCAAAGAATTCGTCCATCCTTCAGGATTTCGGAGAAAACAAGGATCAGTATGTGAACAAGGCTCCCTATCAAA : TCACCAGACCAAAAGTTTCGGCTCCACCTGGGTTCTCAATGCCCCCAAGGGACCTGCCTCACGGTTTTGCCTCATCTGATGATATAGGAGGAATGCCTCGTTCTCTTTCTG : GTAGTCGTTTAGTAAATAGTTCATCAAGTTTGCTTCACACACCATCAACCGGAAGCATTAGCAGTGCTGGTGATATCGATTTTGTTGACCCTGCCACATCAGTCTTTGGAAATGGCAAACCAACAAATGGTTTTGATATATCAGCCTTGGAGATCGGGTCAGCTTGTGTGCCACAGAGGAGAGGGTTTGAAGACGAAGCAAGAATCTGGCATCTTATGCAACAAAAACCTTTAGATCAAGGGAAATTCTCTCAACGAATTGCTTCTCAAACACCATCCATGCATCAGTCACGAAGGCATCCTAGCCATGGCGGAGATGAGTATCTTGGCCTGGATGATATATATGGCTTCTCATCAAGGATGGTGGATCAACACCAAAGTTTCAATTCATCTTCCTATTCACAATTTCCACAGCAGAAGCTT</gDNA_template>
            <first_frame> L  H  S  M  P  *  K  A  V  L  F  Q  I  L  C  Q  R  T  *  I  H  V  M  I  Q  W  P  C  V  V  V  L  L  A  R  M  V  S  L  L  G  S  M  V  L  P  G  T  L  C  T  A  T  N  *  G  S  L  L  *  S  K  M  T  F  P  G  K  E  V  I  W  S  R  L  L  E  I  L  V  R  Y  Q  R  I  R  P  S  F  R  I  S  E  K  T  R  I  S  M  *  T  R  L  P  I  K  :  S  P  D  Q  K  F  R  L  H  L  G  S  Q  C  P  Q  G  T  C  L  T  V  L  P  H  L  M  I  *  E  E  C  L  V  L  F  L  :  V  V  V  *  *  I  V  H  Q  V  C  F  T  H  H  Q  P  E  A  L  A  V  L  V  I  S  I  L  L  T  L  P  H  Q  S  L  E  M  A  N  Q  Q  M  V  L  I  Y  Q  P  W  R  S  G  Q  L  V  C  H  R  G  E  G  L  K  T  K  Q  E  S  G  I  L  C  N  K  N  L  *  I  K  G  N  S  L  N  E  L  L  L  K  H  H  P  C  I  S  H  E  G  I  L  A  M  A  E  M  S  I  L  A  W  M  I  Y  M  A  S  H  Q  G  W  W  I  N  T  K  V  S  I  H  L  P  I  H  N  F  H  S  R  S   </first_frame>
            <second_frame>  F  I  Q  C  H  R  K  Q  C  Y  F  K  Y  Y  V  K  G  L  E  F  M  *  *  F  N  G  L  A  S  *  F  C  W  L  V  W  *  V  C  W  E  A  W  C  F  L  E  L  F  A  Q  R  P  I  R  V  L  F  C  E  A  R  *  L  F  L  A  R  R  *  F  G  V  V  F  *  K  Y  W  S  D  I  K  E  F  V  H  P  S  G  F  R  R  K  Q  G  S  V  C  E  Q  G  S  L  S  N :   H  Q  T  K  S  F  G  S  T  W  V  L  N  A  P  K  G  P  A  S  R  F  C  L  I  *  *  Y  R  R  N  A  S  F  S  F  W :   *  S  F  S  K  *  F  I  K  F  A  S  H  T  I  N  R  K  H  *  Q  C  W  *  Y  R  F  C  *  P  C  H  I  S  L  W  K  W  Q  T  N  K  W  F  *  Y  I  S  L  G  D  R  V  S  L  C  A  T  E  E  R  V  *  R  R  S  K  N  L  A  S  Y  A  T  K  T  F  R  S  R  E  I  L  S  T  N  C  F  S  N  T  I  H  A  S  V  T  K  A  S  *  P  W  R  R  *  V  S  W  P  G  *  Y  I  W  L  L  I  K  D  G  G  S  T  P  K  F  Q  F  I  F  L  F  T  I  S  T  A  E  A  </second_frame>
            <third_frame>   S  F  N  A  I  E  S  S  V  I  S  N  I  M  S  K  D  L  N  S  C  D  D  S  M  A  L  R  R  S  F  V  G  S  Y  G  E  S  V  G  K  H  G  A  S  W  N  S  L  H  S  D  Q  L  G  F  S  F  V  K  Q  D  D  F  S  W  Q  G  G  D  L  E  S  S  F  R  N  I  G  Q  I  S  K  N  S  S  I  L  Q  D  F  G  E  N  K  D  Q  Y  V  N  K  A  P  Y  Q   : I  T  R  P  K  V  S  A  P  P  G  F  S  M  P  P  R  D  L  P  H  G  F  A  S  S  D  D  I  G  G  M  P  R  S  L  S   : G  S  R  L  V  N  S  S  S  S  L  L  H  T  P  S  T  G  S  I  S  S  A  G  D  I  D  F  V  D  P  A  T  S  V  F  G  N  G  K  P  T  N  G  F  D  I  S  A  L  E  I  G  S  A  C  V  P  Q  R  R  G  F  E  D  E  A  R  I  W  H  L  M  Q  Q  K  P  L  D  Q  G  K  F  S  Q  R  I  A  S  Q  T  P  S  M  H  Q  S  R  R  H  P  S  H  G  G  D  E  Y  L  G  L  D  D  I  Y  G  F  S  S  R  M  V  D  Q  H  Q  S  F  N  S  S  S  Y  S  Q  F  P  Q  Q  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0049A17.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="167885" stop="168200"/>
                    <exon start="168777" stop="168887"/>
                    <exon start="169024" stop="169445"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFNAIESSVISNIMSKDLNSCDDSMALRRSFVGSYGESVGKHGASWNSLHSDQLGFSFVKQDDFSWQGGDLESSFRNIGQISKNSSILQDFGENKDQYVNKAPYQITRPKVSAPPGFSMPPRDLPHGFASSDDIGGMPRSLSGSRLVNSSSSLLHTPSTGSISSAGDIDFVDPATSVFGNGKPTNGFDISALEIGSACVPQRRGFEDEARIWHLMQQKPLDQGKFSQRIASQTPSMHQSRRHPSHGGDEYLGLDDIYGFSSRMVDQHQSFNSSSYSQFPQQKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 282 chains have been computed
$ 
$ memory statistics:
$ 882896 bytes spliced alignments in total
$ 174 spliced alignments have been stored
$ 5074 bytes was the average size of a spliced alignment
$ 32968 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1831 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 321 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 17:50:07
-->
