<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 17:23:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0053A08-qpnaw/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0053A08-qpnaw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-qpnaw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333723" ref_strand="-" ref_description="SGN-U333723        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:3830613-3830972 REVERSE | Aliases: F7B19.23, F7B19_23(evalue: 3e-18, score=84.7) genbank/nr: putative(evalue: 5e-22, score=107)">
      <seq>gaacagatttcacagaacagacacgttccttgctgaaaattgctataaaggaagtcaattttgattttcaaacactgaaaattttccttctcngtattatttttctctaaaaaaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgctgttctgaagtttgctgaagttaaagaagtttgagaaaaaaaaagactaactcaagtcaaacaaatgctggaatagtaagtgctgcaacaacatcggctgcacataatcattcagatgctatcttagcggcggctgagaaacctgcagagttttctggagtcgactttgagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcattaatgagaatgttcctgtttatcagatgaaactccggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgaacaacaatgccaaaacctcaaagaactcttggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggtaaaatttttggactataagatgatagacaataagactgtcgtcacccaagttcaagaattgcaggtcataatccatgatctgtgctgaatgtataaatttatttaatgcctatgttagaaatattaagttttcccttaataaatttatttaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-qpnaw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="576" stop="21661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="875" g_stop="1070" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.888"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1071" i_stop="1498" i_length="428">
            <donor d_prob="0.807" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1499" g_stop="2068" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="739" r_length="552" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2069" i_stop="2810" i_length="742">
            <donor d_prob="0.900" d_score="0.90"/>
            <acceptor a_prob="0.104" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2811" g_stop="2828" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="757" r_length="18" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-U333723" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.036" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333723" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="875" e_stop="1070"/>
          <exon e_start="1499" e_stop="2068"/>
          <exon e_start="2811" e_stop="2828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGATTTCACTGAACAGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAGAAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGAT-GCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCACATAACCTTTAATGTAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGACTATTGAAGATCTCATCGTAAGGTTGAGAATCGAAGAGGATAATAAGGTTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAACATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATTAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGATGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATA</genome_strand>
        <mrna_strand>GAACAGATTTCACAGAACAGACACGTTCCTTGCTGAAAATTGCTAT-AAAGGAAGTCAA-TTTTGA-TTTTCAAACACTGAAAA--TTTTCCTTCTCNGTATT-ATTTTTCTCT-AAAAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTGAAGTTTGCTGAAGTTAAAGAAGTTT--G............................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAAAAAAGACTAACTCAAGTCAAACAAATGCTGGAATAGTAAGTGCTGCAACAACATCGGCTGCACATAATCATTCAGATGCTATCTTAGCGGCGGCTGAGAAACCTGCAGAGTTTTCTGGAGTCGACTTTGAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTT-TATCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGA-----AC-------A-A-CAATGCCAAAACCTC-AAAGAACTCTTGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGG-TAAAATTTTTGGACTATAAGATGATAGACAATAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCT--GTGCTGAATGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATAAATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-qpnaw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312594" ref_strand="+" ref_description="SGN-U312594        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:3830613-3830972 REVERSE | Aliases: F7B19.23, F7B19_23(evalue: 2e-31, score=133) genbank/nr: gi|14586969|gb|AAK70407.1| pol polyprotein [Citrus x paradisi](evalue: 2e-61, score=239)">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-qpnaw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="594" stop="2496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="893" g_stop="2012" g_length="1120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1110" r_length="1110" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2013" i_stop="2084" i_length="72">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2085" g_stop="2196" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1111" r_stop="1222" r_length="112" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-U312594" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>1232</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="893" e_stop="2012"/>
          <exon e_start="2085" e_stop="2196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAG-AAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGAT-GCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCACATAACCTTTAATGTAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGACTATTGA</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGAC--AG-AAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGC-AAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAG........................................................................GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-qpnaw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324842" ref_strand="+" ref_description="SGN-U324842        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc knuckle (CCHC-type) family protein, contains Pfam domain, PF00098: Zinc knuckle | chr2:3820372-3820734 REVERSE | Aliases: F7B19.19, F7B19_19(evalue: 4e-09, score=58.5) genbank/nr: gi|53689765|gb|AAU89775.1| pol polyprotein-like [Solanum tuberosum] (evalue: 2e-102, score=374)">
      <seq>taaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttctttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-qpnaw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="+" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="1908" stop="3216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2208" g_stop="2916" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="710" polyA_stop="744"/>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="+" ref_id="SGN-U324842" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2208" e_stop="2916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGTTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAACATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATTAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGATGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</genome_strand>
        <mrna_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0053A08-qpnaw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320469" ref_strand="+" ref_description="SGN-U320469        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:21249410-21251205 FORWARD | Aliases: F28O9.250(evalue: 3e-75, score=279) genbank/nr: gi|23197806|gb|AAN15430.1| putative protein [Arabidopsis thaliana] >gi|17064822|gb|AAL32565.1| putative protein [Arabidopsis thaliana] (evalue: 1e-73, score=280)">
      <seq>cactcacataacttccatatttatacatggaggtgcaaagattgatagctacttctagagagagaaaaatctagagagagaaagtgataatatgggtatgggatttacaccaaaatctaaagcaaacaacaccaataatagtagtgaaaattggggaatgggttttctcttcatattcttccctgaagaagaagaagaagaagaagagaagaaaaaacccactttctctttcactaattcttcttcttcgtcttcgttgttgccttcgttttcattcaaatcgattaatgcaattcgtaatcgttcaacttcatctcatctcatctcaaaagcacaatccacaatttcaatttgtgtattgttgattttcatcactcttttactcttcactctatcaacttttgaacccaacaattcgttaaatcaaaaacgaaaacccccaattcttaatttccaagagaaattgattttcgcacctgcattgcaaggtatgggttcgttgtatcgaagaggaacaagggctatgaatgacttaatcgtagctcatgtaatcgaatccgtaacggagatcgaactgaaaatgttcctcagattactccatagatccggaatcacttctaaatcagacatattgttcctattttcatcgaaatcaagctcgttggatcacgccattgttgaagagaacaactcctttttgaagctcatcaatggctactacaaatacattaataactcaagttctgacccgacccgatttgttaattcaacttttgacccgacccagtttgtgatttcgagtaagaaagagaaggaaagtggagaacccatttggggtaaaaaaattcgggtttatgaggattttggtaactcaaccgagttaagtctaactcagttgagttatggttcggtggtgggttttgatacgggtgaacttgacccggagaactcgttatccgggttcttggatcatgttccgatgagtttaagaagatgggcttgttacccgatgttattgggtcgggtacggagaaattacaaacatgtccttttagtagacctaaaggaatatctcgtacttggtgattcactaagccaactcaagaatcgtagtccggagtccgttatactgaccacattacctgctcgaaaaaagaactccgagaaaaaatccgttaactcggggtttgtacttggtggtgcacgtggagtgagacgattggctaatgcaatgttaacggaaatcgttcgagctataacacaacataagaagagaaacatggtgtctgaatcaacattgttcaaccaacttgttgcgaatgagtttatgttgaagaatgtgaatttgattgtatcgagtgagtcaactcatgaactaagttcactcaccgggttaatgaactcaaactcgaaatcgggttcgagctcattttctatttctaaattcctattgttaggcgtgggaatagtantttggatattagttatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0053A08-qpnaw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0053A08.1" temp_strand="-" temp_description="C04HBa0053A08.1  CU468928.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0053A08 sequenced_by:sanger upload_account_name:uk">
        <position start="17991" stop="15899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17691" g_stop="16199" g_length="1493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1492" r_length="1492" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0053A08.1" gen_strand="-" ref_id="SGN-U320469" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1493</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0053A08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17691" e_stop="16199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCACATAACTTCCATATTTATACATGGAGGTGCAAAGATTGATAGCTACTTCTAGAGAGAGAAAAATCTAGAGAGAGAAAGTGATAATATGGGTATGGGATTTACACCAAAATCTAAAGCAAACAACACCAATAATAGTAGTGAAAATTGGGGAATGGGTTTTCTCTTCATATTCTTCCCTGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTCTCTTTCACTAATTCTTCTTCTTCGTCTTCGTTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAAATCAAGCTCGTTGGATCACGCCATTGTTGAAGAGAACAACTCCTTTTTGAAGCTCATCAATGGCTACTACAAATACATTAATAACTCAAGTTCTGACCCGACCCGATTTGTTAATTCAACTTTTGACCCGACCCAGTTTGTGATTTCGAGTAAGAAAGAGAAGGAAAGTGGAGAACCCATTTGGGGTAAAAAAATTCGGGTTTATGAGGATTTTGGTAACTCAACCGAGTTAAGTCTAACTCAGTTGAGTTATGGTTCGGTGGTGGGTTTTGATACGGGTGAACTTGACCCGGAGAACTCGTTATCCGGGTTCTTGGATCATGTTCCGATGAGTTTAAGAAGATGGGCTTGTTACCCGATGTTATTGGGTCGGGTACGGAGAAATTACAAACATGTCCTTTTAGTAGACCTAAAGGAATATCTCGTACTTGGTGATTCACTAAGCCAACTCAAGAATCGTAGTCCGGAGTCCGTTATACTGACCACATTACCTGCTCGAAAAAAGAACTCCGAGAAAAAATCCGTTAACTCGGGGTTTGTACTTGGTGGTGCACGTGGAGTGAGACGATTGGCTAATGCAATGTTAACGGAAATCGTTCGAGCTATAACACAACATAAGAAGAGAAACATGGTGTCTGAATCAACATTGTTCAACCAACTTGTTGCGAATGAGTTTATGTTGAAGAATGTGAATTTGATTGTATCGAGTGAGTCAACTCATGAACTAAGTTCACTCACCGGGTTAATGAACTCAAACTCGAAATCGGGTTCGAGCTCATTTTCTATTTCTAAATTTCCTATTGTTAGGCGTGGGAATAGTAATTTGGATATTAGTTATGTTT</genome_strand>
        <mrna_strand>CACTCACATAACTTCCATATTTATACATGGAGGTGCAAAGATTGATAGCTACTTCTAGAGAGAGAAAAATCTAGAGAGAGAAAGTGATAATATGGGTATGGGATTTACACCAAAATCTAAAGCAAACAACACCAATAATAGTAGTGAAAATTGGGGAATGGGTTTTCTCTTCATATTCTTCCCTGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTCTCTTTCACTAATTCTTCTTCTTCGTCTTCGTTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAAATCAAGCTCGTTGGATCACGCCATTGTTGAAGAGAACAACTCCTTTTTGAAGCTCATCAATGGCTACTACAAATACATTAATAACTCAAGTTCTGACCCGACCCGATTTGTTAATTCAACTTTTGACCCGACCCAGTTTGTGATTTCGAGTAAGAAAGAGAAGGAAAGTGGAGAACCCATTTGGGGTAAAAAAATTCGGGTTTATGAGGATTTTGGTAACTCAACCGAGTTAAGTCTAACTCAGTTGAGTTATGGTTCGGTGGTGGGTTTTGATACGGGTGAACTTGACCCGGAGAACTCGTTATCCGGGTTCTTGGATCATGTTCCGATGAGTTTAAGAAGATGGGCTTGTTACCCGATGTTATTGGGTCGGGTACGGAGAAATTACAAACATGTCCTTTTAGTAGACCTAAAGGAATATCTCGTACTTGGTGATTCACTAAGCCAACTCAAGAATCGTAGTCCGGAGTCCGTTATACTGACCACATTACCTGCTCGAAAAAAGAACTCCGAGAAAAAATCCGTTAACTCGGGGTTTGTACTTGGTGGTGCACGTGGAGTGAGACGATTGGCTAATGCAATGTTAACGGAAATCGTTCGAGCTATAACACAACATAAGAAGAGAAACATGGTGTCTGAATCAACATTGTTCAACCAACTTGTTGCGAATGAGTTTATGTTGAAGAATGTGAATTTGATTGTATCGAGTGAGTCAACTCATGAACTAAGTTCACTCACCGGGTTAATGAACTCAAACTCGAAATCGGGTTCGAGCTCATTTTCTATTTCTAAA-TTCCTATTGTTAGGCGTGGGAATAGTANTTTGGATATTAGTTATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="875" PGL_stop="2916"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="875" e_stop="1070"/>
            <exon e_start="1499" e_stop="2068"/>
            <exon e_start="2811" e_stop="2828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.807" acc_prob="0.995" e_score="0.888"/>
          <exon-intron don_prob="0.900" acc_prob="0.104" e_score="0.911"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.888">
            <gDNA_exon_boundary e_start="875" e_stop="1070" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.807" acc_prob="0.995">
            <gDNA_intron_boundary i_start="1071" i_stop="1498" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="0.911">
            <gDNA_exon_boundary e_start="1499" e_stop="2068" e_length="570"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.104">
            <gDNA_intron_boundary i_start="2069" i_stop="2810" i_length="742"/>
          </intron>
          <exon e_serial="3" e_score="0.556">
            <gDNA_exon_boundary e_start="2811" e_stop="2828" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="875" stop="1070"/>
              <exon start="1499" stop="2068"/>
              <exon start="2811" stop="2828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333723" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACAGATTTCACTGAACAGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAG : AGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGATGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGTATAAATTTATTTAATGCCTATGTTAGAAATATTAAGTTTTCCCTTAATACTCAC : TAGTAAGCAAAAATGATA</gDNA_template>
            <first_frame> K  Q  I  S  L  N  R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  N  H  *  K  F  F  H  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  K  F  V  E  V  K  E  V  *   : E  K  K  K  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  F  K  V  F  W  S  R  L  *  E  M  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  T  K  E  N  V  P  V  M  S  D  E  T  P  A  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  A  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  I  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  P  *  S  P  C  *  R  Y  K  F  I  *  C  L  C  *  K  Y  *  V  F  P  *  Y  S   : L  V  S  K  N  D  </first_frame>
            <second_frame>  N  R  F  H  *  T  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  L  I  T  E  N  F  F  I  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  :  R  K  K  K  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  E  K  P  S  K  F  S  G  V  D  F  K  R  C  S  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  P  K  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  M  C  I  A  M  Q  K  P  Q  K  N  S  G  M  L  *  K  R  S  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E  G  I  N  L  F  N  A  Y  V  R  N  I  K  F  S  L  N  T  H  :  *  *  A  K  M  I </second_frame>
            <third_frame>   T  D  F  T  E  Q  T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  *  S  L  K  I  F  S  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R :   E  K  K  R  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  A  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  R  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  S  V  Q  C  V  *  Q  C  K  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  S  M  I  S  L  L  K  V  *  I  Y  L  M  P  M  L  E  I  L  S  F  P  L  I  L  T :   S  K  Q  K  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053A08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1636" stop="1938"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMQQKMFFYLTTLSLQKFTKENVPVMSDETPADERFLVTEAWTHSDFLCKNYILSGLQDDLYNVYSNAKTSKELWDALEKKYKTEDAGMKKFIVAKISGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053A08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="996" stop="1070"/>
                    <exon start="1499" stop="1675"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQSVDRLSLCDLLLFLSSLKLKKFERKKKTNSSQTNAGTVSAATTTVAHNRSNAALAPAEKPSKFSGVDFKRCSKRCSSISLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2208" e_stop="2916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="2208" e_stop="2916" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2208" stop="2916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324842" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGGTTGAGAATCGAAGAGGATAATAAGGTTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAACATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATTAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGATGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</gDNA_template>
            <first_frame> *  G  *  E  S  K  R  I  I  R  L  Q  K  R  G  H  V  V  I  Q  Q  Y  L  E  *  I  L  L  K  K  I  P  Q  N  *  R  K  E  R  K  H  L  V  Q  K  A  I  L  L  R  R  N  S  M  E  T  A  L  I  V  V  N  M  V  I  G  L  M  N  V  G  V  L  R  R  T  R  K  R  K  I  K  Q  T  W  L  N  P  K  E  K  W  M  I  S  V  Q  C  F  Q  N  V  T  W  L  E  I  Q  E  N  D  G  *  I  L  V  P  H  A  M  F  V  P  T  K  N  Y  F  H  H  I  L  Q  H  L  Q  M  K  N  C  L  W  Q  T  P  L  L  Q  R  W  K  E  L  A  K  S  Y  *  R  *  H  Q  A  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  Q  F  *  P  R  M  D  L  N  V  Y  L  F  L  I  K  *  *  *  A  K  M  I  C  M  *  E  K  A  T  L  V  M  T  F  S  N  S  M  *  L  Q  L  I  *  I  K  I  L  L  L  L  </first_frame>
            <second_frame>  K  V  E  N  R  R  G  *  *  G  C  R  K  E  V  T  W  *  F  S  N  I  W  S  K  F  C  *  R  R  F  H  K  I  K  E  K  K  E  N  I  W  S  K  K  Q  S  S  *  E  E  I  Q  W  K  L  L  *  L  W  *  T  W  S  *  G  *  *  M  S  G  S  *  E  G  Q  E  K  E  R  L  S  K  L  G  *  I  Q  R  R  N  G  *  S  L  C  N  A  F  R  M  *  L  G  W  K  S  K  R  M  M  D  R  F  W  C  L  M  P  C  L  C  Q  Q  R  I  I  F  I  I  Y  S  S  T  Y  R  *  K  I  V  Y  G  K  L  R  C  C  K  G  G  R  N  W  Q  S  P  I  K  D  D  I  R  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  S  S  S  D  Q  E  W  I  *  M  C  I  C  F  *  *  S  S  S  K  Q  K  *  Y  V  C  R  K  R  L  P  *  *  *  P  F  Q  T  Q  C  N  C  S  *  Y  E  *  R  F  C  F  F  L </second_frame>
            <third_frame>   R  L  R  I  E  E  D  N  K  V  A  E  K  R  S  R  G  N  S  A  I  S  G  V  N  F  V  E  E  D  S  T  K  L  K  K  R  K  K  T  S  G  P  K  S  N  P  P  K  K  K  F  N  G  N  C  F  N  C  G  K  H  G  H  R  A  N  E  C  R  G  P  K  K  D  K  K  K  K  D  *  A  N  L  A  E  S  K  G  E  M  D  D  L  C  A  M  L  S  E  C  N  L  V  G  N  P  R  E  *  W  I  D  S  G  A  S  C  H  V  C  A  N  K  E  L  F  S  S  Y  T  P  A  L  T  D  E  K  L  F  M  A  N  S  A  V  A  K  V  E  G  T  G  K  V  L  L  K  M  T  S  G  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  P  V  L  T  K  N  G  F  K  C  V  F  V  S  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  G  Y  L  S  D  D  L  F  K  L  N  V  I  A  V  D  M  N  K  D  F  A  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053A08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2540" stop="2914"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WIDSGASCHVCANKELFSSYTPALTDEKLFMANSAVAKVEGTGKVLLKMTSGKVVTLNRVSYVPELRKNLVSIPVLTKNGFKCVFVSDKVVVSKNDMYVGKGYLSDDLFKLNVIAVDMNKDFASS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053A08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2210" stop="2452"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLRIEEDNKVAEKRSRGNSAISGVNFVEEDSTKLKKRKKTSGPKSNPPKKKFNGNCFNCGKHGHRANECRGPKKDKKKKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="893" e_stop="2012"/>
            <exon e_start="2085" e_stop="2196"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="0.959"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="893" e_stop="2012" e_length="1120"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="2013" i_stop="2084" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="2085" e_stop="2196" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="893" stop="2012"/>
              <exon start="2085" stop="2196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCATTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTATTCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTATTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTTATAAATACAAGTTATTGTAAGAATAACAATCTTAAGAAATTTAGACAGTTTCTGTATTTGAGGTTTCTGGAGATTAAAACCTTTATGATTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAGAAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTTCAAAGTTTTCTGGAGTCGACTTTAAGAGATGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCACCAAAGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTATAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAAATTTCTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAG : GATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGACTATTGA</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  N  H  *  K  F  F  H  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  K  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  G  L  F  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  Y  *  G  H  T  V  V  S  V  D  S  D  *  F  L  Y  S  I  L  F  S  A  S  S  Y  F  C  F  C  F  C  L  L  T  L  *  I  Q  V  I  V  R  I  T  I  L  R  N  L  D  S  F  C  I  *  G  F  W  R  L  K  P  L  *  F  S  T  L  L  E  F  L  K  F  I  R  L  T  I  K  R  T  *  K  L  Y  R  *  I  R  N  S  L  C  K  D  L  F  F  T  V  S  I  L  N  T  *  F  I  C  H  L  *  Q  R  K  K  K  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  E  K  P  S  K  F  S  G  V  D  F  K  R  C  S  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  P  K  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  M  C  I  A  M  Q  K  P  Q  K  N  S  G  M  L  *  K  R  S  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E   : G  L  I  V  N  D  A  F  Q  V  A  A  I  I  E  K  L  P  P  L  W  K  D  F  K  N  Y  L  K  H  K  R  K  E  M  T  I   </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  L  I  T  E  N  F  F  I  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  Y  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  I  K  D  T  Q  *  F  L  W  T  R  I  N  S  C  I  L  Y  Y  F  L  L  H  L  I  S  V  S  V  S  V  Y  *  L  Y  K  Y  K  L  L  *  E  *  Q  S  *  E  I  *  T  V  S  V  F  E  V  S  G  D  *  N  L  Y  D  F  L  L  C  L  N  F  *  N  S  F  D  *  R  L  K  E  H  K  N  F  I  V  K  S  E  T  V  C  V  K  I  C  S  L  L  L  V  F  *  I  L  N  L  S  A  I  C  D  R  E  K  K  R  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  A  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  R  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  S  V  Q  C  V  *  Q  C  K  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  S  M  I  S  L  L  K  :  D  *  L  *  M  M  L  F  K  W  L  Q  L  L  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  A  R  R  *  L  L  </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  *  S  L  K  I  F  S  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  I  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  L  L  R  T  H  S  S  F  C  G  L  G  L  I  L  V  F  Y  I  I  F  C  F  I  L  F  L  F  L  F  L  F  I  N  F  I  N  T  S  Y  C  K  N  N  N  L  K  K  F  R  Q  F  L  Y  L  R  F  L  E  I  K  T  F  M  I  F  Y  S  A  *  I  F  K  I  H  S  I  N  D  *  K  N  I  K  T  L  S  L  N  Q  K  Q  F  V  *  R  F  V  L  Y  C  *  Y  F  K  Y  L  I  Y  L  P  F  V  T  E  K  K  K  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  F  K  V  F  W  S  R  L  *  E  M  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  T  K  E  N  V  P  V  M  S  D  E  T  P  A  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  A  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  I  S  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  P  *  S  P  C  *  R :   I  D  C  E  *  C  F  S  S  G  C  N  Y  *  K  V  T  S  I  V  E  G  L  *  K  L  L  E  T  Q  T  Q  G  D  D  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053A08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1636" stop="1938"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMQQKMFFYLTTLSLQKFTKENVPVMSDETPADERFLVTEAWTHSDFLCKNYILSGLQDDLYNVYSNAKTSKELWDALEKKYKTEDAGMKKFIVAKISGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053A08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1123" stop="1365"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITLGTVRGLNLLRTHSSFCGLGLILVFYIIFCFILFLFLFLFINFINTSYCKNNNLKKFRQFLYLRFLEIKTFMIFYSA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053A08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1904" stop="2012"/>
                    <exon start="2085" stop="2194"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNSLWQKFLDFKMIDSKTVVTQVQELQVIIHDLLAEGLIVNDAFQVAAIIEKLPPLWKDFKNYLKHKRKEMTI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17691" PGL_stop="16199"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17691" e_stop="16199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="17691" e_stop="16199" e_length="1493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17691" stop="16199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320469" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTCACATAACTTCCATATTTATACATGGAGGTGCAAAGATTGATAGCTACTTCTAGAGAGAGAAAAATCTAGAGAGAGAAAGTGATAATATGGGTATGGGATTTACACCAAAATCTAAAGCAAACAACACCAATAATAGTAGTGAAAATTGGGGAATGGGTTTTCTCTTCATATTCTTCCCTGAAGAAGAAGAAGAAGAAGAAGAGAAGAAAAAACCCACTTTCTCTTTCACTAATTCTTCTTCTTCGTCTTCGTTGTTGCCTTCGTTTTCATTCAAATCGATTAATGCAATTCGTAATCGTTCAACTTCATCTCATCTCATCTCAAAAGCACAATCCACAATTTCAATTTGTGTATTGTTGATTTTCATCACTCTTTTACTCTTCACTCTATCAACTTTTGAACCCAACAATTCGTTAAATCAAAAACGAAAACCCCCAATTCTTAATTTCCAAGAGAAATTGATTTTCGCACCTGCATTGCAAGGTATGGGTTCGTTGTATCGAAGAGGAACAAGGGCTATGAATGACTTAATCGTAGCTCATGTAATCGAATCCGTAACGGAGATCGAACTGAAAATGTTCCTCAGATTACTCCATAGATCCGGAATCACTTCTAAATCAGACATATTGTTCCTATTTTCATCGAAATCAAGCTCGTTGGATCACGCCATTGTTGAAGAGAACAACTCCTTTTTGAAGCTCATCAATGGCTACTACAAATACATTAATAACTCAAGTTCTGACCCGACCCGATTTGTTAATTCAACTTTTGACCCGACCCAGTTTGTGATTTCGAGTAAGAAAGAGAAGGAAAGTGGAGAACCCATTTGGGGTAAAAAAATTCGGGTTTATGAGGATTTTGGTAACTCAACCGAGTTAAGTCTAACTCAGTTGAGTTATGGTTCGGTGGTGGGTTTTGATACGGGTGAACTTGACCCGGAGAACTCGTTATCCGGGTTCTTGGATCATGTTCCGATGAGTTTAAGAAGATGGGCTTGTTACCCGATGTTATTGGGTCGGGTACGGAGAAATTACAAACATGTCCTTTTAGTAGACCTAAAGGAATATCTCGTACTTGGTGATTCACTAAGCCAACTCAAGAATCGTAGTCCGGAGTCCGTTATACTGACCACATTACCTGCTCGAAAAAAGAACTCCGAGAAAAAATCCGTTAACTCGGGGTTTGTACTTGGTGGTGCACGTGGAGTGAGACGATTGGCTAATGCAATGTTAACGGAAATCGTTCGAGCTATAACACAACATAAGAAGAGAAACATGGTGTCTGAATCAACATTGTTCAACCAACTTGTTGCGAATGAGTTTATGTTGAAGAATGTGAATTTGATTGTATCGAGTGAGTCAACTCATGAACTAAGTTCACTCACCGGGTTAATGAACTCAAACTCGAAATCGGGTTCGAGCTCATTTTCTATTTCTAAATTTCCTATTGTTAGGCGTGGGAATAGTAATTTGGATATTAGTTATGTTT</gDNA_template>
            <first_frame> H  S  H  N  F  H  I  Y  T  W  R  C  K  D  *  *  L  L  L  E  R  E  K  S  R  E  R  K  *  *  Y  G  Y  G  I  Y  T  K  I  *  S  K  Q  H  Q  *  *  *  *  K  L  G  N  G  F  S  L  H  I  L  P  *  R  R  R  R  R  R  R  E  E  K  T  H  F  L  F  H  *  F  F  F  F  V  F  V  V  A  F  V  F  I  Q  I  D  *  C  N  S  *  S  F  N  F  I  S  S  H  L  K  S  T  I  H  N  F  N  L  C  I  V  D  F  H  H  S  F  T  L  H  S  I  N  F  *  T  Q  Q  F  V  K  S  K  T  K  T  P  N  S  *  F  P  R  E  I  D  F  R  T  C  I  A  R  Y  G  F  V  V  S  K  R  N  K  G  Y  E  *  L  N  R  S  S  C  N  R  I  R  N  G  D  R  T  E  N  V  P  Q  I  T  P  *  I  R  N  H  F  *  I  R  H  I  V  P  I  F  I  E  I  K  L  V  G  S  R  H  C  *  R  E  Q  L  L  F  E  A  H  Q  W  L  L  Q  I  H  *  *  L  K  F  *  P  D  P  I  C  *  F  N  F  *  P  D  P  V  C  D  F  E  *  E  R  E  G  K  W  R  T  H  L  G  *  K  N  S  G  L  *  G  F  W  *  L  N  R  V  K  S  N  S  V  E  L  W  F  G  G  G  F  *  Y  G  *  T  *  P  G  E  L  V  I  R  V  L  G  S  C  S  D  E  F  K  K  M  G  L  L  P  D  V  I  G  S  G  T  E  K  L  Q  T  C  P  F  S  R  P  K  G  I  S  R  T  W  *  F  T  K  P  T  Q  E  S  *  S  G  V  R  Y  T  D  H  I  T  C  S  K  K  E  L  R  E  K  I  R  *  L  G  V  C  T  W  W  C  T  W  S  E  T  I  G  *  C  N  V  N  G  N  R  S  S  Y  N  T  T  *  E  E  K  H  G  V  *  I  N  I  V  Q  P  T  C  C  E  *  V  Y  V  E  E  C  E  F  D  C  I  E  *  V  N  S  *  T  K  F  T  H  R  V  N  E  L  K  L  E  I  G  F  E  L  I  F  Y  F  *  I  S  Y  C  *  A  W  E  *  *  F  G  Y  *  L  C   </first_frame>
            <second_frame>  T  H  I  T  S  I  F  I  H  G  G  A  K  I  D  S  Y  F  *  R  E  K  N  L  E  R  E  S  D  N  M  G  M  G  F  T  P  K  S  K  A  N  N  T  N  N  S  S  E  N  W  G  M  G  F  L  F  I  F  F  P  E  E  E  E  E  E  E  E  K  K  K  P  T  F  S  F  T  N  S  S  S  S  S  S  L  L  P  S  F  S  F  K  S  I  N  A  I  R  N  R  S  T  S  S  H  L  I  S  K  A  Q  S  T  I  S  I  C  V  L  L  I  F  I  T  L  L  L  F  T  L  S  T  F  E  P  N  N  S  L  N  Q  K  R  K  P  P  I  L  N  F  Q  E  K  L  I  F  A  P  A  L  Q  G  M  G  S  L  Y  R  R  G  T  R  A  M  N  D  L  I  V  A  H  V  I  E  S  V  T  E  I  E  L  K  M  F  L  R  L  L  H  R  S  G  I  T  S  K  S  D  I  L  F  L  F  S  S  K  S  S  S  L  D  H  A  I  V  E  E  N  N  S  F  L  K  L  I  N  G  Y  Y  K  Y  I  N  N  S  S  S  D  P  T  R  F  V  N  S  T  F  D  P  T  Q  F  V  I  S  S  K  K  E  K  E  S  G  E  P  I  W  G  K  K  I  R  V  Y  E  D  F  G  N  S  T  E  L  S  L  T  Q  L  S  Y  G  S  V  V  G  F  D  T  G  E  L  D  P  E  N  S  L  S  G  F  L  D  H  V  P  M  S  L  R  R  W  A  C  Y  P  M  L  L  G  R  V  R  R  N  Y  K  H  V  L  L  V  D  L  K  E  Y  L  V  L  G  D  S  L  S  Q  L  K  N  R  S  P  E  S  V  I  L  T  T  L  P  A  R  K  K  N  S  E  K  K  S  V  N  S  G  F  V  L  G  G  A  R  G  V  R  R  L  A  N  A  M  L  T  E  I  V  R  A  I  T  Q  H  K  K  R  N  M  V  S  E  S  T  L  F  N  Q  L  V  A  N  E  F  M  L  K  N  V  N  L  I  V  S  S  E  S  T  H  E  L  S  S  L  T  G  L  M  N  S  N  S  K  S  G  S  S  S  F  S  I  S  K  F  P  I  V  R  R  G  N  S  N  L  D  I  S  Y  V  </second_frame>
            <third_frame>   L  T  *  L  P  Y  L  Y  M  E  V  Q  R  L  I  A  T  S  R  E  R  K  I  *  R  E  K  V  I  I  W  V  W  D  L  H  Q  N  L  K  Q  T  T  P  I  I  V  V  K  I  G  E  W  V  F  S  S  Y  S  S  L  K  K  K  K  K  K  K  R  R  K  N  P  L  S  L  S  L  I  L  L  L  R  L  R  C  C  L  R  F  H  S  N  R  L  M  Q  F  V  I  V  Q  L  H  L  I  S  S  Q  K  H  N  P  Q  F  Q  F  V  Y  C  *  F  S  S  L  F  Y  S  S  L  Y  Q  L  L  N  P  T  I  R  *  I  K  N  E  N  P  Q  F  L  I  S  K  R  N  *  F  S  H  L  H  C  K  V  W  V  R  C  I  E  E  E  Q  G  L  *  M  T  *  S  *  L  M  *  S  N  P  *  R  R  S  N  *  K  C  S  S  D  Y  S  I  D  P  E  S  L  L  N  Q  T  Y  C  S  Y  F  H  R  N  Q  A  R  W  I  T  P  L  L  K  R  T  T  P  F  *  S  S  S  M  A  T  T  N  T  L  I  T  Q  V  L  T  R  P  D  L  L  I  Q  L  L  T  R  P  S  L  *  F  R  V  R  K  R  R  K  V  E  N  P  F  G  V  K  K  F  G  F  M  R  I  L  V  T  Q  P  S  *  V  *  L  S  *  V  M  V  R  W  W  V  L  I  R  V  N  L  T  R  R  T  R  Y  P  G  S  W  I  M  F  R  *  V  *  E  D  G  L  V  T  R  C  Y  W  V  G  Y  G  E  I  T  N  M  S  F  *  *  T  *  R  N  I  S  Y  L  V  I  H  *  A  N  S  R  I  V  V  R  S  P  L  Y  *  P  H  Y  L  L  E  K  R  T  P  R  K  N  P  L  T  R  G  L  Y  L  V  V  H  V  E  *  D  D  W  L  M  Q  C  *  R  K  S  F  E  L  *  H  N  I  R  R  E  T  W  C  L  N  Q  H  C  S  T  N  L  L  R  M  S  L  C  *  R  M  *  I  *  L  Y  R  V  S  Q  L  M  N  *  V  H  S  P  G  *  *  T  Q  T  R  N  R  V  R  A  H  F  L  F  L  N  F  L  L  L  G  V  G  I  V  I  W  I  L  V  M  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0053A08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17633" stop="16200"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1434</number_coding_nucleotides>
                  <number_encoded_amino_acids>478</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REKNLERESDNMGMGFTPKSKANNTNNSSENWGMGFLFIFFPEEEEEEEEKKKPTFSFTNSSSSSSLLPSFSFKSINAIRNRSTSSHLISKAQSTISICVLLIFITLLLFTLSTFEPNNSLNQKRKPPILNFQEKLIFAPALQGMGSLYRRGTRAMNDLIVAHVIESVTEIELKMFLRLLHRSGITSKSDILFLFSSKSSSLDHAIVEENNSFLKLINGYYKYINNSSSDPTRFVNSTFDPTQFVISSKKEKESGEPIWGKKIRVYEDFGNSTELSLTQLSYGSVVGFDTGELDPENSLSGFLDHVPMSLRRWACYPMLLGRVRRNYKHVLLVDLKEYLVLGDSLSQLKNRSPESVILTTLPARKKNSEKKSVNSGFVLGGARGVRRLANAMLTEIVRAITQHKKRNMVSESTLFNQLVANEFMLKNVNLIVSSESTHELSSLTGLMNSNSKSGSSSFSISKFPIVRRGNSNLDISYV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 32 chains have been computed
$ 
$ memory statistics:
$ 45760 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 11440 bytes was the average size of a spliced alignment
$ 6976 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3488 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 44 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 17:24:07
-->
