<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-20 08:43:12"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340128" ref_strand="+" ref_description="SGN-U340128        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | tRNA modification GTPase, putative, similar to tRNA modification GTPase trmE (strain PCC 7120, Anabaena sp.) SWISS-PROT:Q8YN91 | chr1:29338394-29341345 FORWARD | Aliases: F28K19.23, F28K19_23(evalue: 5e-64, score=234) genbank/nr: At1g78010(evalue: 3e-62, score=234)">
      <seq>tggctttgctacctgcactccgccatctcttcacccacttgcgttcaccagccacatccatagccttgtctatctgcccaagattgtcaatcccaattcacacaacactctcttctctcttccctctttcttcttcttcttcttctcaacctactgctaagcatcatgctatttctaaagagagtactctggtgctgaaacaagacgagaggttatcagtgtctggtacagtgagcgctcttgactcagccgttaatactagcaccattgctgctattgtcacttctttgggtggtccagcagctgcagttggaattattcggttatctggtccttctgcagtgcctatagttggtcgtgtatttcatcccaaggtgaaaaagaagaaaaggagttcttcggagtggagaccgagtagtcatgttgtagagtacggttttgtttccgactctcatgggaatgtgattgatgaagttctggtggttcctatgctggctccaaagtcttacactagagaagatgtgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="-" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="3964" stop="1769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3664" g_stop="3485" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3484" i_stop="2856" i_length="629">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2855" g_stop="2563" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="473" r_length="293" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2562" i_stop="2124" i_length="439">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2123" g_stop="2069" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="528" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="-" ref_id="SGN-U340128" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U340128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3664" e_stop="3485"/>
          <exon e_start="2855" e_stop="2563"/>
          <exon e_start="2123" e_stop="2069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTTGCTACCTGCACTCCGCCATCTCTTCACCCACTTGCGTTCACCAGCCACATCCATAGCCTTGTCTATCTGCCCAAGATTGTCAATCCCAATTCACACAACACTCTCTTCTCTCTTCCCTCTTTCTTCTTCTTCTTCTTCTCAACCTACTGCTAAGCATCATGCTATTTCTAAAGGTAACTCCTTTCATCTTCCTGCATACCCATTTTATAATGCTAATGTTTCAATCTATTCATTGAATATAGTTATCTAGTGTTGAAAGAATTGTTTTTTAGTGATAAAGATTCAATCTTTTTATTGCATATACTACTCCTGTGCTGAAATAATTGAATTTAATGCTAATCTTGTTATTGCAGAAAATGCTGTGGTATTGAAAAAATTGATTTTTGTTGATAAAGATTCAATCTTTTAATTGCAGAGAATTATGTGGTTCTACAAGAATTGGGTTTTAATGCTGAAGTTTCAATTTTTCTGTTGCAAAGAATACTATGGTGCTGAAAGAATTGTTTTTGACTTTTAAAGATCCAATCTTTTTATTGCAGAGAGTACTCTGGTACTGAAAAAAAATTGGATTTTGGTGCTGAAATTTCAATCTTTCTGTTGCAGAGAATACTATGGAGCTGAAAGAATTGTTTTTTACTGATAATATTTTGATCTTTTTATAGAAGAGAATAATGTGGTTGTAAAAGAATTAGGTTTAATGCTTAAGTTTCAATTTTTCTTTTATTGTATAGATTCTACTCTGGTGCTGAAAAATTGATTTGAATGCTTAAGTTTCAATGTTTTTTATTTATTTTTATTGCAGAGAGTACTCTGGTGCTGAAACAAGACGAGAGGTTATCAGTGTCTGGTACAGTGAGCGCTCTTGACCCAGCCGTTAATACTAGCACCATTGCTGCTATTGTCACTTCTTTGGGTGGTCCAGCAGCTGCAGTTGGAATTATTCGGTTATCTGGTCCTTCTGCAGTGCCTATAGTTGGTCGTGTATTTCATCCCAAGGTGAAAAAGAAGAAAAGGAGTTCTTCGGAGTGGAGACCGAGTAGTCATGTTGTAGAGTACGGTTTTGTTTCCGACTCTCATGGGAATGTGATTGATGAGGTATAATTTGAAACTCTAGATTTTTCCTTCTGGTTGGTGCATTTATTCTTTAGATTTGACATGTGAATTACACTACATTGATGATTTTAAGAGTTTGGTGCTGTTGTTGCTTCATATCTGAATTAAGCCTTTGCGACGTCTTCTTATTATATCTAGTACTTTTATCTGCTCTTATTAAGTTCATACCTGTGGGGAATTGGTTCTTCATTTAATTCTATTATAACCCCGTAGATAAGGTGAGGTAAAGGTGTCTATAGAATGGAAACGAGAGTCTGTTTCAGGACATTTCTAGTGGCTTCTGCCTTTACCTTAAAGAAATAAAGAGACGCTAAAATAATGAATATGTTGGAAGTCATTGTTAATAGTTTCAATAGTTTTATTCTTCTTCTTCTTCTTCTATCTCTCTCTCTCTAAATTCCTTTTTCTTTTTCTTGCTTAGGTTCTGGTGGTTCCTATGCTGGCTCCAAAGTCTTACACTAGAGAAGATGTGATAG</genome_strand>
        <mrna_strand>TGGCTTTGCTACCTGCACTCCGCCATCTCTTCACCCACTTGCGTTCACCAGCCACATCCATAGCCTTGTCTATCTGCCCAAGATTGTCAATCCCAATTCACACAACACTCTCTTCTCTCTTCCCTCTTTCTTCTTCTTCTTCTTCTCAACCTACTGCTAAGCATCATGCTATTTCTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTACTCTGGTGCTGAAACAAGACGAGAGGTTATCAGTGTCTGGTACAGTGAGCGCTCTTGACTCAGCCGTTAATACTAGCACCATTGCTGCTATTGTCACTTCTTTGGGTGGTCCAGCAGCTGCAGTTGGAATTATTCGGTTATCTGGTCCTTCTGCAGTGCCTATAGTTGGTCGTGTATTTCATCCCAAGGTGAAAAAGAAGAAAAGGAGTTCTTCGGAGTGGAGACCGAGTAGTCATGTTGTAGAGTACGGTTTTGTTTCCGACTCTCATGGGAATGTGATTGATGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGGTGGTTCCTATGCTGGCTCCAAAGTCTTACACTAGAGAAGATGTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332057" ref_strand="+" ref_description="SGN-U332057        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to sulfate transporter [Arabidopsis thaliana] (TAIR:At5g10180.1); similar to low affinity sulphate transporter [Stylosanthes hamata] (GB:CAA57831.1); similar to Putative sulfate transporter [Oryza sativa (japonica cultivar-group)] (GB:AAN59769.1); similar to Putative sulfate transporter [Oryza sativa (japonica cultivar-group)] (GB:AAN59770.1); similar to sulfate permease [Brassica juncea] (GB:CAA11413.1); contains InterPro domain Sulphate transporter (InterPro:IPR001902); contains InterPro domain Sulfate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645) | chr1:29322793-29328246 REVERSE | Aliases: None(evalue: 2e-42, score=168) genbank/nr: gi|77862356|gb|AAZ08077.2| putative low affinity sulfate transporter [Brassica napus] (evalue: 5e-42, score=173)">
      <seq>aacaaacaaacaaaaaaacagaatgggtacactagccaatgagagtttcagcattgagctacagcagcttgatgcagctactgatactgcaaggaatcagagaactcaatggctccttgcttctcctaatcctccaaattttttccatcaactcattaattctgttaaaaaaaatgttgacagaaccacaaaacgatcaacaaatggtgttttcttttcattcttgaaaggattgtttccaatccttagctggggaagaaattataaatgtacaatgtttaagcatgacataatggctggcttaactcttgctagtctctgcataccacagagtattggatatgctaatcttgcgaaacttgatcctcaatatggcttatacgctagtgttgttccaccacttatatatgctgtgatgggaagttcgcgagagattgctattggccctgttgctgtagtgtcacttcttatttctgcactgatttccaagattatagaccctgctgtcgatccaatcgcttacaggaatcttgttttcactgccacattcttcactggtgcatttcaggctgtttttggactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="25540" stop="26913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25840" g_stop="26170" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26171" i_stop="26286" i_length="116">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26287" g_stop="26335" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="380" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26336" i_stop="26409" i_length="74">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26410" g_stop="26613" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="584" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-U332057" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25840" e_stop="26170"/>
          <exon e_start="26287" e_stop="26335"/>
          <exon e_start="26410" e_stop="26613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAAACAAAAAAACAGAATGGGTACACTAGCCAATGAGAGTTTCAGCATTGAGCTACAGCAGCTTGATGCAGCTACTGATACTGCAAGGAATCAGAGAACTCAATGGCTCCTTGCTTCTCCTAATCCTCCAAATTTTTTCCATCAACTCATTAATTCTGTTAAAAAAAATGTTGACAGAACCACAAAACGATCAACAAATGGTGTTTTCTTTTCATTCTTGAAAGGATTGTTTCCAATCCTTAGCTGGGGAAGAAATTATAAATGTACAATGTTTAAGCATGACATAATGGCTGGCTTAACTCTTGCTAGTCTCTGCATACCACAGGTAATAATAATAAAAAGAAAAGAATCGTTTTTTATTAGTCGTGTAAAGGTCGTTCAAACCTTTACACGAGTAATATAGGTTCCTAACTGTAATTGGAATGTTATATCTTTATGCAGAGTATTGGATATGCTAATCTTGCGAAACTTGATCCTCAATATGGCTTATGTAAGTTGAAAAAAATACAGAGTTTGGTTCGATTCTTGTAGATATAGTTTATGATATTTTTCTTATTGTTGTAGACGCTAGTGTTGTTCCACCACTTATATATGCTGTGATGGGAAGTTCGCGAGAGATTGCTATTGGCCCTGTTGCTGTAGTGTCACTTCTTATTTCTGCACTGATTTCCAAGATTATAGACCCTGCTGTCGATCCAATCGCTTACAGGAATCTTGTTTTCACTGCCACATTCTTCACTGGTGCATTTCAGGCTGTTTTTGGACTAT</genome_strand>
        <mrna_strand>AACAAACAAACAAAAAAACAGAATGGGTACACTAGCCAATGAGAGTTTCAGCATTGAGCTACAGCAGCTTGATGCAGCTACTGATACTGCAAGGAATCAGAGAACTCAATGGCTCCTTGCTTCTCCTAATCCTCCAAATTTTTTCCATCAACTCATTAATTCTGTTAAAAAAAATGTTGACAGAACCACAAAACGATCAACAAATGGTGTTTTCTTTTCATTCTTGAAAGGATTGTTTCCAATCCTTAGCTGGGGAAGAAATTATAAATGTACAATGTTTAAGCATGACATAATGGCTGGCTTAACTCTTGCTAGTCTCTGCATACCACAG....................................................................................................................AGTATTGGATATGCTAATCTTGCGAAACTTGATCCTCAATATGGCTTAT..........................................................................ACGCTAGTGTTGTTCCACCACTTATATATGCTGTGATGGGAAGTTCGCGAGAGATTGCTATTGGCCCTGTTGCTGTAGTGTCACTTCTTATTTCTGCACTGATTTCCAAGATTATAGACCCTGCTGTCGATCCAATCGCTTACAGGAATCTTGTTTTCACTGCCACATTCTTCACTGGTGCATTTCAGGCTGTTTTTGGACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326080" ref_strand="+" ref_description="SGN-U326080        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | sulfate transporter, identical to sulfate transporter (Arabidopsis thaliana) GI:2114104 | chr5:3193145-3197121 FORWARD | Aliases: None(evalue: 5e-80, score=294) genbank/nr: gi|607188|emb|CAA57831.1| low affinity sulphate transporter [Stylosanthes hamata] >gi|1711618|sp|P53393|SUT3_STYHA Low affinity sulphate transporter 3 (evalue: 2e-84, score=315)">
      <seq>cttgatggtaacaaagaaatggtagcaattggatgtatgaaccttgtgggatctttaacttcttgctacacagcaactggttcattttcgagaacagcagtgaactacagtgcaggatgtgaaactgttgtgtcaaacatagttatggcaataacagttctgatatcattagagttgttgacaaagctattatactatactccattggcaatactagcatcaattatcatatcagctttaccaggattaattgacattactgaagcatttcacatttggaaagttgacaagacagatttcatcatttgcattgctgctttcttgggagtactctttggctccgtcgaaatcggtcttataatagcggttggaatttcatttggtaaaataatacttggtaccattagaccaagtgtagaactacaaggtagactacctggaacagacactttttgtgacataactcaatttccagtggctactgaaactcaaggagttttggttattagagtgaacaatgcttcactatgctttgcaaatgctaatttcataagaggaaggatattgagcatagtgacaaatagaagtgaagagcagtccaagggaaaacttcgtatcttagtgctagatatgtcaagtgtaatgagcattgatacatcaggaattgttgcattggaaggagttgaacagagaaattggtatcacaaggcatacaattagctatagcaaatccaaggtggggaagtaatgaacaagttgaaggtagcaaaatttgtagatgaacttggaaataggtggattttcctcagtgttggagatgctgtaaatgcctgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="27172" stop="29765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27472" g_stop="27550" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27551" i_stop="27640" i_length="90">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27641" g_stop="27927" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="366" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27928" i_stop="28556" i_length="629">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28557" g_stop="28750" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="560" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28751" i_stop="28843" i_length="93">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28844" g_stop="28920" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="637" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28921" i_stop="29052" i_length="132">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29053" g_stop="29129" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="716" r_length="79" r_score="0.948"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29130" i_stop="29346" i_length="217">
            <donor d_prob="0.981" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29347" g_stop="29465" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="836" r_length="120" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-U326080" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27472" e_stop="27550"/>
          <exon e_start="27641" e_stop="27927"/>
          <exon e_start="28557" e_stop="28750"/>
          <exon e_start="28844" e_stop="28920"/>
          <exon e_start="29053" e_stop="29129"/>
          <exon e_start="29347" e_stop="29465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATGGTAACAAAGAAATGGTAGCAATTGGATGTATGAACCTTGTGGGATCTTTAACTTCTTGCTACACAGCAACTGGTAAACTTTCAAACTAAAGTAAACTTTTTTTTAATTTTTTTTTTAAATGTGATGGTCATATACTTCAATATGTCATGCGAATCGTTGTAGGTTCATTTTCGAGAACAGCAGTGAACTACAGTGCAGGATGTGAAACTGTTGTGTCAAACATAGTTATGGCAATAACAGTTCTGATATCATTAGAGTTGTTGACAAAGCTATTATACTATACTCCATTGGCAATACTAGCATCAATTATCATATCAGCTTTACCAGGATTAATTGACATTACTGAAGCATTTCACATTTGGAAAGTTGACAAGACAGATTTCATCATTTGCATTGCTGCTTTCTTGGGAGTACTCTTTGGCTCCGTCGAAATCGGTCTTATAATAGCGGTAACTATATTGTCTCTATTTTATATATTTATATACAAAAATTGTGAACTTAGCTACTGAATTCACGTGAAAACATATCTGAACTTCAACATTGTCCCCGGCCTTTGGTGTTAACTACTAAGTACTAGAGATCTCAAATTCAATTCCAGAGTAGAATTTATTGGCTAATTATATGAATTTTATATAAAAGACAAAAAAAAATTGGGAATTTAATGTTGATGTGAAATATCAAATAATTAAAAAGACGTCATTTGTGGGTTCCATTTGTTGGATTCTTTTACTAGTACTAGTAAACATTAATGCATGGAGAGTAGGTTATGATGCTTTTTCTTTTGTTCCAAAAATAATTGACTCATTTCCACTCTTTGATCATCTGTCATGTTCTTTTTTCAACTTTTAGTAACCATTTGTTCACAAAACAACAACTTGTTGTCTATGCTTTATGGATAAGGTACAGTGTACTATTCATCTGATTCCACATATAAATATCTCAAATTTAACCTCTTATAATAATAATAATAGTGTTCAGATCAACTTGCATGCACAAAACAAATCAGTGTACGTGTTTGATTAATATTTGTTACTTAATTTTCATCACTTTAATAACCGCGACTAATACTTAATTGCAGGTTGGAATTTCATTTGGTAAAATAATACTTGGTACCATTAGACCAAGTGTAGAACTACAAGGTAGACTACCTGGAACAGACACTTTTTGTGACATAACTCAATTTCCAGTGGCTACTGAAACTCAAGGAGTTTTGGTTATTAGAGTGAACAATGCTTCACTATGCTTTGCAAATGCTAATTTCATAAGAGGAAGGTACATTTTTAAATTTTACATAGAGGAATATGAAATTTATTAAATAATTGTTTATAATTTCCTTTTTTCTTTTATTTTAATTTTTCCAATTAGGATATTGAGCATAGTGACAAATAGAAGTGAAGAGCAGTCCAAGGGAAAACTTCGTATCTTAGTGCTAGATATGTCAAGTAAGGTTCTTTAATATCTGTTTGGACAACTACAAAAATAATCAAAAATATATTAGAAAAGTCGCGCTAAATTCTAGAAATCGCGATACTATAAATAGGCCAAAATTTTACATTGATGAATTGTTATTTCAGGTGTAATGAGCATTGATACATCAGGAATTGTTGCATTGG-AGGAGTTGAACAGAG-AATTGGTATCACAAGGCATACAAGTTAGTTTCTCTCTAATAATGTGACCAAAAAAATGTCAATAAATGTTCAACATAATTTTTTTTAGTCCATCTAAAATGAATCTCATAATTTTTTATTTATAGTTTTAATCAGGATGAGATGATTTATAGTCATACAGATGCCTATGACTTGTTATAGATCATGAGTCACATAAATTATAATTCGTTATATTGTACTCAATTTTTTTTATTTTTGCAGTTAGCTATAGCAAATCCAAGGT-GGGAAGTAATGAACAAGTTGAAGGTAGCAAAATTTGTAGATGAACTTGGAAATAGGTGGATTTTCCTCAGTGTTGGAGATGCTGTAGATGCCTGTTT</genome_strand>
        <mrna_strand>CTTGATGGTAACAAAGAAATGGTAGCAATTGGATGTATGAACCTTGTGGGATCTTTAACTTCTTGCTACACAGCAACTG..........................................................................................GTTCATTTTCGAGAACAGCAGTGAACTACAGTGCAGGATGTGAAACTGTTGTGTCAAACATAGTTATGGCAATAACAGTTCTGATATCATTAGAGTTGTTGACAAAGCTATTATACTATACTCCATTGGCAATACTAGCATCAATTATCATATCAGCTTTACCAGGATTAATTGACATTACTGAAGCATTTCACATTTGGAAAGTTGACAAGACAGATTTCATCATTTGCATTGCTGCTTTCTTGGGAGTACTCTTTGGCTCCGTCGAAATCGGTCTTATAATAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAATTTCATTTGGTAAAATAATACTTGGTACCATTAGACCAAGTGTAGAACTACAAGGTAGACTACCTGGAACAGACACTTTTTGTGACATAACTCAATTTCCAGTGGCTACTGAAACTCAAGGAGTTTTGGTTATTAGAGTGAACAATGCTTCACTATGCTTTGCAAATGCTAATTTCATAAGAGGAAG.............................................................................................GATATTGAGCATAGTGACAAATAGAAGTGAAGAGCAGTCCAAGGGAAAACTTCGTATCTTAGTGCTAGATATGTCAA....................................................................................................................................GTGTAATGAGCATTGATACATCAGGAATTGTTGCATTGGAAGGAGTTGAACAGAGAAATTGGTATCACAAGGCATACAA.........................................................................................................................................................................................................................TTAGCTATAGCAAATCCAAGGTGGGGAAGTAATGAACAAGTTGAAGGTAGCAAAATTTGTAGATGAACTTGGAAATAGGTGGATTTTCCTCAGTGTTGGAGATGCTGTAAATGCCTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328122" ref_strand="+" ref_description="SGN-U328122        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT5G10080.1 | Symbol: None | aspartyl protease family protein, contains Eukaryotic and viral aspartyl proteases active site, PROSITE:PS00141 | chr5:3150844-3153381 FORWARD | Aliases: T31P16.70, T31P16_70 (evalue: 4e-76, score=227) genbank/nr: gi|72384474|gb|AAZ67590.1| 80A08_5 [Brassica rapa subsp. pekinensis] (evalue: 2e-58, score=229)">
      <seq>gcacgatcaagcagtagcaagtatctatcttgcagccatcaattatgtgaactgggtcctaactgccggagtccaaaggaacattgcccttatactgttaattactattctgaaaatacatcaacttcggggttccttttcgaggaccaattgcatttgacttcagttggtggacatgaacatcaaggttctgtgctagctcctattgttataggctgtggtagcaaacaaagtggcaattatttgagtggagctgctccagatggggtgatgggattagggccaggagaaatttctgttccaagtttgctggcgaagtctggatttgttccacgctcattctcattgtgttttggaaagagcaattctggcacaattttctttggtgataaagggcctgaaaatcaaagacgaagttcatttgtatctttggatgaaaattacaatacctatgttgttgaagttcaacattattgtgttgggggtacctgtccaaagcaaagtggatttcaagccttagttgatagtgggtcttccttcacttttctcccttctgaaatctttacaaaagtagtaactgagtttgaagagcaaatgaacgttacgaggttagctatagaagattttccttgctgctataaggctaggtaaagtctgctctcgtgaaaatgctgtttttttgttttatttacttgtagattattctccatatgcttttttatgcagttcacaaggtttaccgaacattcctagcatgaaacttttgttagctgctaatcagagctttgtaattcagaaccccatgtttaccatctccagtagtcagggtgataacttttattgtgtgggtctcctacctattgaaggaatgattggtattattggacagaactttatggagggatatcgattggtgtttgattgggaaaacatgaagttgggttggtctcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="-" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="88434" stop="84841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88134" g_stop="87920" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87919" i_stop="87605" i_length="315">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87604" g_stop="87377" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="443" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87376" i_stop="87274" i_length="103">
            <donor d_prob="0.691" d_score="1.00"/>
            <acceptor a_prob="0.602" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87273" g_stop="87135" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="582" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87134" i_stop="86994" i_length="141">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.824" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86993" g_stop="86750" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="826" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86749" i_stop="85365" i_length="1385">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85364" g_stop="85304" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="827" r_stop="887" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85303" i_stop="85206" i_length="98">
            <donor d_prob="0.327" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85205" g_stop="85141" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="888" r_stop="952" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="-" ref_id="SGN-U328122" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>952</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88134" e_stop="87920"/>
          <exon e_start="87604" e_stop="87377"/>
          <exon e_start="87273" e_stop="87135"/>
          <exon e_start="86993" e_stop="86750"/>
          <exon e_start="85364" e_stop="85304"/>
          <exon e_start="85205" e_stop="85141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACGATCAAGCAGTAGCAAGTATCTATCTTGCAGCCATCAATTATGTGAACTGGGTCCTAACTGCCGGAGTCCAAAGGAACATTGCCCTTATACTGTTAATTACTATTCTGAAAATACATCAACTTCGGGGTTCCTTTTCGAGGACCAATTGCATTTGACTTCAGTTGGTGGACATGAACATCAAGGTTCTGTGCTAGCTCCTATTGTTATAGGGTATGCTCTTTTCTTTTTCCAGTTCTGTATTATTGTAAGTAGGATCAGCTCAATGGTTTTGTGACAAAGAAGACTTGATAAACCTTCTTTATGAGTTCCATTATGAGCGAGTTTGTAGGTGCCTTAGCTGAATGTAGCAAAGGATTCTCCAATGAGAAGATTTGACCCTTGAACCTTGATACCTTTTATAGCTGTCTCAGTTGTGACTGTTTATTTTTGGCAATATGATTGTCGCCTAGCTGCTAGTTGTCATGTTACAGTATTTACCAGTTGGTTGATGAATGTGGTTTTCTTTTACGTAATAACTTATTGCAGCTGTGGTAGCAAACAAAGTGGCAATTATTTGAGTGGAGCTGCTCCAGATGGGGTGATGGGATTAGGGCCAGGAGAAATTTCTGTTCCAAGTTTGCTGGCGAAGTCTGGATTTGTTCCACGCTCATTCTCATTGTGTTTTGGAAAGAGCAATTCTGGCACAATTTTCTTTGGTGATAAAGGGCCTGAAAATCAAAGACGAAGTTCATTTGTATCTTTGGATGAAAATTAGTATGTATCTCCTCTATTCTTTTGTGCTATGTTTAGTTTGATAGGCAATTTAAACAACTTCATTTGCACATTATCTTATGTTCCTACTCGTAATTTTTACCAGCAATACCTATGTTGTTGAAGTTCAACATTATTGTGTTGGGGGTACCTGTCCAAAGCAAAGTGGATTTCAAGCCTTAGTTGATAGTGGGTCTTCCTTCACTTTTCTCCCTTCTGAAATCTTTACAAAAGTAGTAACTGAGGTACAAATATCATTTTTCTCTTGTCCTGCTATTCCCCTTTTCACTCTCTTAATTTCACAAGTTACTCTTCAGCTTAGTTTTAGAATGCACATGCAGTTTTTTTGCGGTACCTGAGCTATTTCCTATTTTTTTCTCTTCTAGTTTGAAGAGCAAATGAACGTTACGAGGTTAGCTATAGAAGATTTTCCTTGCTGCTATAAGGCTAGGTAAAGTCTGCTCTCGTGAAAATGCTGTTTTTTTGTTTTATTTACTTGTAGATTATTCTCCATATGCTTTTTTATGCAGTTCACAAGGTTTACCGAACATTCCTAGCATGAAACTTTTGTTAGCTGCTAATCAGAGCTTTGTAATTCAGAACCCCATGTTTACCATCTCCAGTAGTCAGGTCAGTATTTGAATCTCTTTGTTTGCCATCATCCTGCAAATTAATCTTTTTTGTTGAGGCATAGAAGATTTAGCTGTAAGATTTTTTTCTTTGAATGAGCTGGTAACATGCGATGCTTATGCATGCAAACTCACTTGCATTTATATGAAGATGAAGTTAGTGCACCCAAAATGCAGAAACTGACTCAGGTCTTAATCTGGAATTAATACTATCTCTACCTTTTCTGTCAATTTAAGTACTTGCTATTTTTCTTTTTCAGGAAAAAAATTACTCCCTACTTTTCATTTTGTGTCTGGTAGCTAACTGGCTTTAGAGCTTTTAATAGTTGTTAATTTCATTGTTACTATTATTTTGGATTTGGAATTTCTCTAAAATCTAAGTTCTTGTGAGATTGAATCCAGCTCTTCACCAAGAAACTTTTGGTAGAGATGCTTGAAGCATATCACTTAAGGTGAACGAGAGTCACTGCAAGAAAGGATCCAAAGTTTGCTATGAGTGATGTTGAACAGATAGGACATGGGGCTAATTGGTGCCATGACACCTAAAGCTTAAGAACATTTCTGCTGGTACTTGGGAAATTTTTGATAGTGTAAACTAGCTCTATAAGATTTTGTATGTGGCTTCTGTGATAGGTTTACTGTAGAACTGCAATCCTTCCAAAAATTTCTTCTGTGTCCATCCCAGCTTGTTAGTTCTTATCATCTCTCCTATGAAGTTAGTTCTCTAAAAATTCTACTCTCCCTCTATCAATTTGTTGTCTTGCTTTCCTTTTTAGTGTGTTTCAAGAAGAATGCCTCTTTCCTAATTTGGCAACTCAGTAATGAGTAACTTCAACATCCTACCTGGCGTGTTTAAGGCCAACAGAATGAAGTGAATTTTGATACAATATACATATTTTTAGTTTAAGACCACAAGATTTAATAGTCATCTTTACATAAACTCCATGCCAAGTCAAACTAAGACAAACAAATAGAAACAGAGAGAGTATTAGTTTTGCCAACAATAGAAAATATATTTATTAGTTTTGTCATAGTGGCTACTGGTTACAAAGTCAGTTTGTTTGGTCCCATTCATTAGTAATCAAAGTTGTAGCACGTTGTTTTGCAAACTTCTGGAGTAAAATGCTCTCTATGTGCAAAGATGAATGACGGATAAATGCCCTTGTACTTGGTCTATGTTCATCTTTGTTTTACTGCTGTGAATAAACATGTTACCCTGTTGCCTTTGCATGCTTAAACAATATCTTTTCAATTCCTTTATGACAAAGCAAGTATGGTTTTCTCCATAAGTTTTCTAGTGTATGATCCCAAGTTCACTGTGCCCTCTCATGGACTTTGTTTTGCAGACTTATAGTGATGGTTTCTTATTGGAGGTATTTTGTGCAGGGTGATAACTTTTATTGTGTGGGTCTCCTACCTATTGAAGGAATGATTGGTATTATTGGACGTAAGTTCATATGTAATTTTGAAGTAATGTAAGGCGCACATATATGCATGTTGACTGTTGGATGTTCCATGCAATTTCATTTGAATTATGCTGTGCAGAGAACTTTATGGAGGGATATCGATTGGTGTTTGATTGGGAAAACATGAAGTTGGGTTGGTCTCGC</genome_strand>
        <mrna_strand>GCACGATCAAGCAGTAGCAAGTATCTATCTTGCAGCCATCAATTATGTGAACTGGGTCCTAACTGCCGGAGTCCAAAGGAACATTGCCCTTATACTGTTAATTACTATTCTGAAAATACATCAACTTCGGGGTTCCTTTTCGAGGACCAATTGCATTTGACTTCAGTTGGTGGACATGAACATCAAGGTTCTGTGCTAGCTCCTATTGTTATAGG...........................................................................................................................................................................................................................................................................................................................CTGTGGTAGCAAACAAAGTGGCAATTATTTGAGTGGAGCTGCTCCAGATGGGGTGATGGGATTAGGGCCAGGAGAAATTTCTGTTCCAAGTTTGCTGGCGAAGTCTGGATTTGTTCCACGCTCATTCTCATTGTGTTTTGGAAAGAGCAATTCTGGCACAATTTTCTTTGGTGATAAAGGGCCTGAAAATCAAAGACGAAGTTCATTTGTATCTTTGGATGAAAATTA.......................................................................................................CAATACCTATGTTGTTGAAGTTCAACATTATTGTGTTGGGGGTACCTGTCCAAAGCAAAGTGGATTTCAAGCCTTAGTTGATAGTGGGTCTTCCTTCACTTTTCTCCCTTCTGAAATCTTTACAAAAGTAGTAACTGAG.............................................................................................................................................TTTGAAGAGCAAATGAACGTTACGAGGTTAGCTATAGAAGATTTTCCTTGCTGCTATAAGGCTAGGTAAAGTCTGCTCTCGTGAAAATGCTGTTTTTTTGTTTTATTTACTTGTAGATTATTCTCCATATGCTTTTTTATGCAGTTCACAAGGTTTACCGAACATTCCTAGCATGAAACTTTTGTTAGCTGCTAATCAGAGCTTTGTAATTCAGAACCCCATGTTTACCATCTCCAGTAGTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAACTTTTATTGTGTGGGTCTCCTACCTATTGAAGGAATGATTGGTATTATTGGAC..................................................................................................AGAACTTTATGGAGGGATATCGATTGGTGTTTGATTGGGAAAACATGAAGTTGGGTTGGTCTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320864" ref_strand="+" ref_description="SGN-U320864        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: AT4G39680.1 | Symbol: None | SAP domain-containing protein, contains Pfam domain PF02037: SAP domain | chr4:18414300-18417524 REVERSE | Aliases: T19P19.70, T19P19_70 (evalue: 2e-16, score=83.6) genbank/nr: gi|15235982|ref|NP_195678.1| expressed protein [Arabidopsis thaliana] gi|7487219|pir||T05005 hypothetical protein T19P19.70 - Arabidopsis thaliana gi|3080437|emb|CAA18754.1| putative protein [Arabidopsis thaliana] gi|7270952|emb|CAB80631.1| putative protein [Arabidopsis thaliana](evalue: 1e-14, score=83.6)">
      <seq>aattaaaaccctagaaattctcttcatcttaagccattagcattttacaaatccaattttcttccgaaagaacagtttttcttggtgtcatttttatataaattatatacgtgtattgatataaatatatatataattaacagatcaatataatttaggaatactgtattgttttgcttagatttgtattaatttgtttctgattctaacaattgtgtgcttttgtttctgggcagagggtttctctcgtttctgttttggaactagggttttcaccatctttttggttgaaagttttggtgtccaagtgactatttgcactggtttgtctaagtgatttttttcacttggcggctaagatgtcggactaccctgtgcttgataatcgtccaattaataaatggaaagtagcagaattaagggatgagcttaagaggaggaacttaacgacaaaaggtttgaaggatgatctggttagacgattaaatgaagctatctgcatagaaatggaagctgctgcagttaaagagagtaaggatgatgatcgtgacattgatcctgccagtggtcttgaagatactgaacccgagcctgatcctgttaaattggttgatgatgttctggagcatcccccaattgaagtcactcatggttctgaacatattactgatgctacatgtggtcttgaagaagctcaaccaaatagcaatcctgatatattggttgataacgttcagaagcaaaaacaagatgaatttaacagtattgacagtgatgttgctagggccaccaccaagaattgtcttgttggaatagaccagaacaaagtcatggatgaggttgcaactggaggtaatgatgatgttctgaagcatcaccaaaatgaagttaacgaaattgatggtgatgccagtgctagcaccaagaatgctcttgttgaaatagaccagaataaagtcttggatgaggttgcaactggagatactgctgctggagaatcaaaccgtttggaggcaccggttggtagcactagtgttataaatgagattgcatctaataaggaacacaaggttattgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="100762" stop="106086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101062" g_stop="101384" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101385" i_stop="105029" i_length="3645">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105030" g_stop="105786" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="1080" r_length="757" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-U320864" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1080</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101062" e_stop="101384"/>
          <exon e_start="105030" e_stop="105786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAAACCCTAGAAATTCTCTTCATCTCAAGCCATTAGCATTTTACAAATCCAATTTTCTTCCGAAAGAACAGTTTTTCTTGGTGTCATTTTTATATAAATTATATACGTGTATTGATATAAATATATATATAATTAACAGATCAATATAATTTAGGAATACTGTATTGTTTTGCTTAGATTTGTATTAATTTGTTTCTGATTCTAACAATTGTGTGCTTTTGTTTCTGGGATTAGGGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTGGTAAGTACCCTTTTCATTAATTGTCTGAATTTTTTATATTTTCACTTTCTTGAATAGAAAATGTTGAAACGTTGGGGCGGCGGCTGGGTAGGAGCTAAGATTTTTTTTTTTTTTTAGTTTAAAGTTTTGCAATTGGGTTAAAATTAGAAGTAAGAAAGACATGGGGATTAATATATTTGAGTTTTAAAGTTAAAGATACTGTTCTCTTGCAATTTTTTTATTTGGAAGACTGAGATCTAGCTACTTTATATTGGACTTGTGATTGGCATTATGGTTTCTTTATGGATTATTTTGTTCATAGCTCTAGTAAGTTCCACCAAGTAGTTGTCTTCTTAAGATGCCTATACGTTATGTTGGATTTACATTTTTTGAGTGCATATGTTCAGTGAATAGCAATGCTTTGACGGATTAAACCTTATATTGCCTTATCTTTCTTCTTAGCCCTATATATTTGGCTACCACTTATATAGGCGCGGAAAGCACTTAACACTCTCTCTCTGCATGAGAGAAGCTTGTGCTATTATTTAAATATGAGGATCTCAGCTGAATATAATATTGAAAAATGTTGCAGCAAGGGTGTTGTCCAATGGTCAATGAAGTGGGTTGAGCACCATGAGGTCTCAGGTTCCAATCCCAGTAGGGATAAGACACTAGGTGATTTCTGCCCATATGTTCTAGCCTTGGTGGATAGAGTTACCTAGAAGTGGTGGTAGGTTATCCTGTGGAATATCCAGACACCATAATTATCCAAAAAAATATATTGAAAAATGTCGATAGCTAACATAAAAGATGAAACAACATACAACAAACATAGAGAATGATTAAAAAAGAAGCAACAATTAACATATCACAGCAATGACATACCCGGTATAATCACAAAAAGTTCCTAGCTTTGATATTTTTTGCGAGGTTCAGTATGTCCATTAGTATAAATATTTGCGAGGAGTCTTTTCCCATAAAAAACAACTTCTTTGCATGTAACCGGTATTATCTATGCATGTCAAGTTTAGATTTCATCTTGCAGGGTGGTCTTTATTTTGTGTTGGAATGGAAAGATAAATAGGGGATGAAGATTGTGTTTGATTGGGCATCACCATATGAGTGGTTAATAGTAAGGTCTAGAAGTATTAGGAAGGCATAGGATAGATCTAACCAACAATATCTGATAGAAATTTTTACTATATAGAGGTGCAAGACCAAATCTCTGAAGGTTGTTCTATTTATCATGGGTTTAAATCTACCTGAGATGATGTTGAGAACTTGATGATTTAGTTGGCGTGTGTGCATCTTACCATCCCCACACCCCACTTGTGGGGTTATACTGGATATATCGTTATAGTTGGCGTGTGGACATTAATTTTGATGATATTTGAAGTTAAGTTTGCTTCAATTTCATATGTGACCTGAGCTTCAAGCAAAGAAGGTCGTAACCTCGGGCGGTCGCAAAGTCAACGTTCTTACCGTGAACTAGGCAAGCACCTAGATGTTAATTCTTAAGCCTTAGCCCGAAATTCTTATTTATTCATCAGAGTTCCAAGCCTGTAAGCACAACTGCATATTTCCGAGCTCGAGGTTGCGCCCACTCCGCATGCGTTCTGGTTCAGGAACTATAGAACACCCTTTCCTTCCTGATATCCAAAGGAGAGTGGAGCTTCAACACCGGATGTCCTTCTATTTTATCGGGATGAACTGCCTTGTATCAAAAATGGAGTTGGGTAAAGCAAACTTTCTCCTTGGAGGAGCACGGGTTTACTCAAGTAGAACCAGGTTGCCTCCTTGATTCTGTGATCGAAAACAAATAGTGGGTCATGCTGGTATGATAAGAAAGGGTATTTGGAAATTGAAATGATGTCTGGACATGCATTTCAATTGGAAAAATGGTGAAATCTTATGAGGGAAATATTATTTTCTTACTTGGTAAGTTGTTAGAACCAGCCACTTCAAGTTGAAGTGAAAAATTGGCTATGTTTTAACTAGCCCTAAAGCTATTTTCTAACTGAGAATTCTAAATTGTGACTGAACGAGTACTCTAAAGGATTGGTACATGTATGAAAGAGTACACCATACTTTTCTTGAGTGTATTGTAGCAGCCATTGTGATTATGAAATGTGAGCTTTATGAAAAGAACTATTAAGGGATTAGGACATGTACGAAAGAATGCACCAGCATTGTTCTTAAATGTTTTGAGGAAACCATTTTGAAAGAGCAAGTGCATGGTAGAGAGGAACACATAGATCAGATAGGACTGACTAAAAGGAAAGAGTATTTCACTGACAATCCTTTATGAATAGACATATTCTTGATAAGTAGTGGTTGATGTTTGGGAATGATAGAAATCCATAGAAGAACTGGTATGAAGAGGGTAACATTAAATATGACTGGAAAATCTTTTAGAGAAATTGCTAAATAGCCAAATCTTTGTTTCTGTTGGCTGCCTCATGCATTTTAACCGGTAACCTGGTGGTCACATAGAATGAGGTGCATGGTTTCTGGAGAAAAAAAAGGCTGATGTAGGGTTGTTAGATTGGCTGGAATCTCTCTTCATTTGTGATGCATGTAAATAGTTGCAGCATCCAGTCAATTTGTGGATACGGACTTGGACAATCTAGAGGACAGGTTGAGAGTGAAGATATTCGTGCTCTTAGCAGCTTCGTATTCCGAAGTCTATGTAAGTGAAAAGTCTTTTTTTGCCTTTGGGTAGTAGGAAAGAGAATGCAAAGATGCCGAGGAGTTGCATTTTTCACTTCGTATTTAACATATGAAGCATTTTCTACATTTGAAAATTTGAGAGACGGAAACGATAATGATGGTGGTTCATGTGCAAGGAATATGAAGAAATTGGAACCACTTTCTGTTGCATTATAAGAGTTGTCTTACAGCTACGGCCCCTAGTGTTTGATGTTTTGACATCATGTAGGTGTTATCTAGAACAGGGGCAGTGCTAGCACCTGAAGCAATTACATAGATAGAAGGTACAGGAAACTTCCAAAGTGTGGAAGTAAGCATTAAGACGGTTGTCTTATGGATACTAGGAGTTACCTGAATTGACAAGATGTTAGTAATAAGAAAATTCTTAGTGTTCCATATGTATTTTTGTGTTACAAGGAGTATATACCTTTTCTTATTAAGATTGGCAATTGCCGAGCCGTGAACTATATTAGTTTTTTTCTTGGTCATCAGTATTTGAGATCTTGGCAAAATTTTATTAAAGAATTTAATGAAGAGTATTTCAAGTTATAAATGATGGCTTTTTACTCACCAATCTTTCATATATAGTCCTGTATTCAAGGAGAAACTCATCCAAATACAACTTTAACTTCCAAATACTCTTTTCCAACTTCAACTGAATATTGCTCAAACTCCTATTATATATTTTAGCACTGGCTTGGTGTGCAATGTCTGAGTATATTTTGTTTTTTTAAGAAAAAAGAGAACACAATAAAGAAAGTCTCGTCCACGACAAATATGCATTTTTTTGAAACCCGTCATGTATAGTTGAAATTTCTATAGAGGTGAGTACTAATCTCTGCTAGTGTTAAAAAAAGAAAGAGGAAAAGATCTGCATATAAGGATTTTGTCTTTTCTTGATTTTGAGATTCATTCAGGTCTCTTTTTTCAAGTTTTATATGTCCATGTGACTTTCAGGTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTTGCTAGGGCCACCACCAAGAATTGTCTTGTTGGAATAGACCAGAACAAAGTCATGGATGAGGTTGCAACTGGAGGTAATGATGATGTTCTGAAGCATCACCAAAATGAAGTTAACGAAATTGATGGTGATGCCAGTGCTAGCACCAAGAATGCTCTTGTTGAAATAGACCAGAATAAAGTCTTGGATGAGGTTGCAACTGGAGATACTGCTGCTGGAGAATCAGACCGTTTGGAGGCACCGGTTGGTAGCACTAGTGTTATAAATGAGATTGCATCTAATAAGGAACACAAGGTTATTGATT</genome_strand>
        <mrna_strand>AATTAAAACCCTAGAAATTCTCTTCATCTTAAGCCATTAGCATTTTACAAATCCAATTTTCTTCCGAAAGAACAGTTTTTCTTGGTGTCATTTTTATATAAATTATATACGTGTATTGATATAAATATATATATAATTAACAGATCAATATAATTTAGGAATACTGTATTGTTTTGCTTAGATTTGTATTAATTTGTTTCTGATTCTAACAATTGTGTGCTTTTGTTTCTGGGCAGAGGGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTTGCTAGGGCCACCACCAAGAATTGTCTTGTTGGAATAGACCAGAACAAAGTCATGGATGAGGTTGCAACTGGAGGTAATGATGATGTTCTGAAGCATCACCAAAATGAAGTTAACGAAATTGATGGTGATGCCAGTGCTAGCACCAAGAATGCTCTTGTTGAAATAGACCAGAATAAAGTCTTGGATGAGGTTGCAACTGGAGATACTGCTGCTGGAGAATCAAACCGTTTGGAGGCACCGGTTGGTAGCACTAGTGTTATAAATGAGATTGCATCTAATAAGGAACACAAGGTTATTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333032" ref_strand="+" ref_description="SGN-U333032        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>cgggatggttctattccagtcattagcactagacaggatgttgaggatatgaaaatttcatcttatgaggtagtgcttgaggacaaccttacgggacaagaaaatgatgtggaggtaaccccagtaacatcagaggaagccttgaaaaaccacagcattaagttggataatgagggtctgaaactctcagacatggatgctgagccagatatgtccaatccagccactcaggtatatgaggtcaaccctaatttagggtctcaagtaaaatctgactcattttctactgatactttgaccattaatgaaaataaagatttaaatgataatttgaatgctgataatgtcaaattaaaaactgaagttgttaggcaagagatggagctgcattcatccatcaaagacctatcaagtgttggtagctctcatccattggatggtcatatgccacatgaaatgcagggtcttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="105529" stop="106598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105828" g_stop="106298" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-U333032" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105828" e_stop="106298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATGGTTCTATTCCAGTCAGTAGCACTAGACAGGATGTTGAGGATATGAAAATTTCATCTTATGAGGGAGTGCTTGAGGACAACCTTAGGGGACAAGAAAATGATGTGGAGGTAACCCCAGTAACATCAGAGGAAGCATTGAAAAACCACAGCATTAAGTTGGATAATGAGGGTCTGAAACTCTCAGACATGGATGCTGAGCCAGATATGTCCAATCCAGCCACTCAGGTATATGAGGTCAACCCTAATTTAGGGTCTCAAGTAAAATCTGACTCATTTTCTACTGATACTTTGACCATTAATGAAAATAAAGATTTAAATGATAATTTGAATGCTGATAATGTCAAATTAGAAACTGAAGTTGTTAGGCAAGAGATGGAGCTGCAGTCATCCAGCAAAGACCTATCAGGTGTTGGTAGCTCTCATCCATTGGATGGTCAGATGCCACATGAGATGCAGGGTCTTGTT</genome_strand>
        <mrna_strand>CGGGATGGTTCTATTCCAGTCATTAGCACTAGACAGGATGTTGAGGATATGAAAATTTCATCTTATGAGGTAGTGCTTGAGGACAACCTTACGGGACAAGAAAATGATGTGGAGGTAACCCCAGTAACATCAGAGGAAGCCTTGAAAAACCACAGCATTAAGTTGGATAATGAGGGTCTGAAACTCTCAGACATGGATGCTGAGCCAGATATGTCCAATCCAGCCACTCAGGTATATGAGGTCAACCCTAATTTAGGGTCTCAAGTAAAATCTGACTCATTTTCTACTGATACTTTGACCATTAATGAAAATAAAGATTTAAATGATAATTTGAATGCTGATAATGTCAAATTAAAAACTGAAGTTGTTAGGCAAGAGATGGAGCTGCATTCATCCATCAAAGACCTATCAAGTGTTGGTAGCTCTCATCCATTGGATGGTCATATGCCACATGAAATGCAGGGTCTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319663" ref_strand="+" ref_description="SGN-U319663        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: AT4G39680.1 | Symbol: None | SAP domain-containing protein, contains Pfam domain PF02037: SAP domain | chr4:18414300-18417524 REVERSE | Aliases: T19P19.70, T19P19_70 (evalue: 2e-71, score=266) genbank/nr: SAP(evalue: 2e-78, score=296)">
      <seq>gtcatccagcaaagacctatcaggtgttggtagctctcatccattggatggtcagatgccacatgagatgcagggtcttgttggagaaactgatgatgacaaatcttcagatgtgaaatttagcatgaaaaatgacaatgcagatcaggtttctgttgacgtttccaaggtagagcatgatttcgagagtaagactccaaataatagtgagcaacccgatatacagtttgaaaaagctagaactttaggtgatgttgaagagcctagtttgtcacccatgaaaattgaggcatctgcggaagatacacacgatcttgctgtttctggtgatgatagaaaagattttagcaagatagccgatgtagtggatggtgagaatatggaaaagattaacttggatcagtcttctgctgatgattccatggaggaggatgtagtagagacaaaacatgtggattttgatcatatttctaagaaagagaatgacaagactgatgagtttattacgggaatgacagaagagcccaaagttcgaccaagtggttcttctgatgcaatgcagctagacattccttctgagaaggttgcgtctcaagaaactaaagataagtctcttgctttgtcagagaagagaaagtttcaagatgaagcaggaggtgggagtaaagagcctgcaaaaaggcagcgtagatggaacactgagaagactgctgaaccccaaaattctagtattgctttaacaaagaaggttgttcagcccactcctatcaaacccatccttggcaggactaactctacagttggtggggattcacccaaggagcgctttgtaccaaagtcttcaaaaacagccactacttctctcaaaattgagaatttcttgcggccttttacgctgaaagctgtgcaagagctccttgcaaggactggtgaagtctgcagtttctggatggaccagataaagacccattgctatgtcacgtattcttcggtagaagaagccacagagaccagaaacgcggtgtacaatctccaatggccaccaaatggtggtcgtctcctggttgcagattttgttgatcctcaacaggtgcaaaccaagatagagggtcgggaacctgcttctccaccgaaagttaccagtcctgctgtgcctgcttcatcctttgttcaaacaccacctgctcagcagcagggtcgcaaacaacaagctgagttggaacattcactcacacgccagccacctcctgctcctcctagtgctcctccaacaaaagagatgctgccttcacctgttgctgataaaaatgatccccctattgttactttggatgacctcttcagaaagaccaaagtcactccccgtatctattatttaccgctgacagatgaagaagttgctaaaaagcttgccattaggggaaatgctaagccttgagatattaggtaaataaaggggcatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="105917" stop="109176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106217" g_stop="106557" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106558" i_stop="106649" i_length="92">
            <donor d_prob="0.425" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106650" g_stop="106952" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="644" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106953" i_stop="107612" i_length="660">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107613" g_stop="107798" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="830" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.510" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107891" g_stop="108042" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="831" r_stop="982" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108043" i_stop="108393" i_length="351">
            <donor d_prob="0.538" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108394" g_stop="108876" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="983" r_stop="1465" r_length="483" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-U319663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106217" e_stop="106557"/>
          <exon e_start="106650" e_stop="106952"/>
          <exon e_start="107613" e_stop="107798"/>
          <exon e_start="107891" e_stop="108042"/>
          <exon e_start="108394" e_stop="108876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATCCAGCAAAGACCTATCAGGTGTTGGTAGCTCTCATCCATTGGATGGTCAGATGCCACATGAGATGCAGGGTCTTGTTGGAGAAACTGATGATGACAAATCTTCAGATGTGAAATTTAGCATGAAAAATGACAATGCAGATCAGGTTTCTGTTGACGTTTCCAAGGTAGAGCATGATTTCGAGAGTAAGACTCCAAATAATAGTGAGCAACCCGATATACAGTTTGAAAAAGCTAGAACTTTAGGTGATGTTGAAGAGCCTAGTTTGTCACCCATGAAAATTGAGGCATCTGCGGAAGATACACACGATCTTGCTGTTTCTGGTGATGATAGAAAAGGTATGGAAGCACCTCCTTCCACTAAAAATGACTGTTCCTTCTTTCCTAAGACCGGTTCTTCCAGATCTTATGTGTTGTTTCTTTGCTTGCAGATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATTAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAGAAGGTTGCGTCTCAAGAAACTAAAGATAAGTCTCTTGCTTTGTCAGAGAAGAGAAAGTTTCAAGGTACTCATGTCTTTTCTTTAATTGTCTCTCTTTCCCTCCTTTTTTTGCAGTAAATTCTCCCCTCCTGTTCTACACATGTTTATTGATCACTTCTTTTTTACTTTTACAATTTTATTATTAGGATTTGTTGCTTCCTTATCAGAAAATAATATTAGAGTTAGCTGTTCATTGCTTATGTATTCTTTGAAATGTTTTCGTGAAGCTTTAAATGGTGAAACTTTTGTATATTTTATATGGTGAAGTCCAGATTGTTTTTTTTTGAACATCGGTAAAGTTGGTGAAGTCCAGATTGTTAGTATGTTTATTAGTTCTGTTTTTCTTGTGAATGCTCAAACATTTGATTGGACCGCATGTTTTACTAGAATATTGCCACAAAAAATTGCCTTTTTTTTCATTGTTAAAGTTGAAGCTCACAACTGGAAAGCAGCTAAGGTTGTGCTTACTAGGTTGTGCTTACTAGAGTGTGTGTCTGTATAATGAAATTTCTGATACCAATGGCAGGTATTAGAATCTTCTTGCAATGTGGGATATGAAGCCCTCTCTATTTACATCAACTTTGGATAATTATAGTGATAATGGCGAATAAGAATACGACTTATTCTTTTCTTATTCTATAATTTGGTTTCTTAAGATTTTTGACTTCTTTTGGATTCTTTGTAGATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTGGTGAGTCTTTGTTTTCTTGGTAATGCATGAGTTTCAAATGCAACAGTAGCAGCACAACTATAATTACTTCTAATGTTCTGTTAATATTCCAGTACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACGGTACAATCTTGCTCTGATCTCCTACTGCATTTCATGCTCATCGAGTTTCTCCATCTTAAATTATACTTGCTACTCTTAGGAAAGGGCAGGGTTGGGGGACAGTTGTCATTGGGATGGGCATTATTTGAAACCTTGATGCTGCACCAGTTGGCCCAAGTCCCTCTGGTCGATTTGTCATAACATACCTTGTTATTTTGCATCATTGCCTTACAGAGATTGCATTCCCAAATATTAATGTGTTGTATGATTTGGCTTCTTGGCAATCCTCTCTTGAACTTATTAGAAAAGTCTATATTGTGTTTCCTTCCGTAATGGTTCAGCGTAATTAATTGCTACGTGTTCTCTTAACAGTATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTCCTGCTCCTCCTAGTGCTCCTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATGACCTCTTCAGAAAGACCAAAGTCACTCCCCGTATCTATTATTTACCGCTGACAGATGAAGAAGTTGCTAAAAAGCTTGCCATTAGGGGAAATGCTAAGCCTTGAGATATTAGGTAAATAAAGGGGCATGTT</genome_strand>
        <mrna_strand>GTCATCCAGCAAAGACCTATCAGGTGTTGGTAGCTCTCATCCATTGGATGGTCAGATGCCACATGAGATGCAGGGTCTTGTTGGAGAAACTGATGATGACAAATCTTCAGATGTGAAATTTAGCATGAAAAATGACAATGCAGATCAGGTTTCTGTTGACGTTTCCAAGGTAGAGCATGATTTCGAGAGTAAGACTCCAAATAATAGTGAGCAACCCGATATACAGTTTGAAAAAGCTAGAACTTTAGGTGATGTTGAAGAGCCTAGTTTGTCACCCATGAAAATTGAGGCATCTGCGGAAGATACACACGATCTTGCTGTTTCTGGTGATGATAGAAAAG............................................................................................ATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATTAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAGAAGGTTGCGTCTCAAGAAACTAAAGATAAGTCTCTTGCTTTGTCAGAGAAGAGAAAGTTTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTG............................................................................................TACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACG...............................................................................................................................................................................................................................................................................................................................................................TATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTCCTGCTCCTCCTAGTGCTCCTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATGACCTCTTCAGAAAGACCAAAGTCACTCCCCGTATCTATTATTTACCGCTGACAGATGAAGAAGTTGCTAAAAAGCTTGCCATTAGGGGAAATGCTAAGCCTTGAGATATTAGGTAAATAAAGGGGCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335410" ref_strand="-" ref_description="SGN-U335410        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 60S ribosomal protein L30 (RPL30B), similar to ribosomal protein L30 GI:388034 from (Homo sapiens) | chr1:29308791-29310259 REVERSE | Aliases: F28K19.15, F28K19_15(evalue: 7e-50, score=194) genbank/nr: ribosomal(evalue: 8e-50, score=200)">
      <seq>cctcgtgccgaattcggcacgaggcttagttccacagatctttgtgtaatcaagaatggtgactaccgggaagaaatcgaagaggactcatgagagcatcaacaacagattggctctcgtaatgaagagtggaaagtatactcttggttacaagactgttctcaagactctcaggacctcaaaagggaagttgatattgatatcaaacaactgcccccctttgaggaaatctgagattgagtattatgctatgcttgctaaagttggtgttccccatttcaatggaaataatgttgatctaggtacagcatgtggaaagttcccccgtgtgtcatgcctgagcatcattgaccctggtgattccgacattatcaagtctctgcctggagatcagtaagagttggtgatctagtagtcattccctttaaacaatttagaaaatgttttgcggggctgctataaaccattttactgatgttgagagaatctgtagtatctttttgttctttgtgttttggagttatcctgagattctagagtattttggtgttatctagtttttgttggaggtatcatttctccatgtttgttaaggccaaatcccttaaagggtattcatagatcaattttcctgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="110476" stop="112746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110776" g_stop="110936" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="185" r_length="161" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111038" g_stop="111139" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="287" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111988" g_stop="112056" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="356" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.814" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112163" g_stop="112440" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="633" r_length="277" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="652"/>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-U335410" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335410" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="110776" e_stop="110936"/>
          <exon e_start="111038" e_stop="111139"/>
          <exon e_start="111988" e_stop="112056"/>
          <exon e_start="112163" e_stop="112440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAGGTTGCTTTTTTTTATTTTATTTTCTTTCTTCTTTTCAATTGCCCTTTTTGTTACATTTTTTTTCTGGCGTTTTTGGGTTTAATGTATGATGGGTTTTGCAGGGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAAGTAAGTCCATTTTCAATGATTTTTGTTAATTGTAATCAAGTTCTAGCATTTGGATTGATTTGTATTGGCATTGATTTTGTACCATGTTAGTTGATGAAAAATCTGATATTTTTGTTTTGTTTTTAAGTTCATTAGATTCCACTTTATTTGATATGCTATAAATTTGTTTAAATAGTCATGCCAGCCTCCCCAGACGCCATTTCTGGGACTATATAGTGCCCATACGCAAGTGAAGGTACTGAGACAGTCTGAGATCTGCTCATGTATTTGTGTTCAATATCATGGACAAGTGGAAGTGCCGAACCCCTTTTTTGCTTAAACATGAATTTTAAGTTGGGAATGATTGTAGCAGATAAGACCGGTTAATGACTAGTAACTGAGATTTCATCTTCGTGAGTTCGTCAAGATCATAAGCTTTCATTTCATTTTTTTCACTTGAAATAGTAATTTTAGCATGTCCTTGCATTTCATTATGCACATTTGAAATTTAAGTCATTTCCCTTAAGGTTTATCTGCAACATAGGACTGCTAGGTTTTATTTGTCAGTTGTTTGTTAATATATATTAAACATCATTTCTACTATAAGTCATTCCCAACATATCTGTTTTTGAGTATATATTGCATATCAGTTTATGGTTGTTTGTGTGATGCTAAGTCCCTTGTGCTGTATTCTTTCATTTTCTTTTGGATGGTTACAATATAACTTCTGTCGGTATATTGAGTTCCTGTTTGTTCTGTTGGAAATTTTTTCGAGGAACCTTCTTTGTGACTTTTGTCTTTGACTAGAACGAGTATTTTCACAACTATCTAATGTATGTGTTCTTTTCCCCTTGCTATTTTGTGTGCAGACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAGGTAAAGTGTATTTGAGATTATTCATTGTAGTTTTGTAAAATCTTATAATGGGTACTAAAGGGTAAGCACACAGTTTGACTGACTTGTGGAAATGGTGATGTTTCAGGTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAG-TTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCT</genome_strand>
        <mrna_strand>CTTAGTTCCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATCAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTATACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG.....................................................................................................GGAAGTTGATATTGATATCAAACAACTGCCCCCCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTTGCTAAAGTTGGTGTTCCCCATTTCAATGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGTTGATCTAGGTACAGCATGTGGAAAGTTCCCCCGTGTGTCATGCCTGAGCATCATTGACCCTG..........................................................................................................GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGGTGATCTAGTAGTCATTCCCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTATAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATCCTGAGATTCTAGAGTATTTTGGTGTTATCTAGTTTTTGTTGGAGGTATCATTTCTCC--ATGTTTGTTAAGGCCAAATCCCTTAAAGGGTATTCATAGATCAATTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329835" ref_strand="+" ref_description="SGN-U329835        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>tttttctttctgtaaagattcacgttaaactttccaatttgatctcctcttcttcttcttttttctacttttctttcaacatcaagcaatttatagcacccaagaaacaaacaagtttctcactctttaagctgacccatagattttttgattgattcatcttctctgattcttttattttctcatatttccatttcttgaagctcttctaagaaaaacccacaaaaaatgattcatttctgaaatcaatcactctgttttcttggttatttgggtattgagggatttgaattttttattttctttccaaagttgcaatcttttcagtgtattgttatttgggggttttcttgatttgggttggaaaaaaggggtgaatcaaaaagttggtttttgagattttcttggatttgggtgttgtgggtattggataaaattgagtcttttgttcatttaagattttgatctgccgggggcattcttggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="+" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="128412" stop="129499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128712" g_stop="129199" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="+" ref_id="SGN-U329835" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128712" e_stop="129199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTCCTGTAAAGATTCACGTTAAACTTTCCAATTTGATCTCCTCTTCTTCTTCTTTTTTCTACTTTTCTTTCAACATCAAGCAATTTATAGCACCCAAGAAACAAACAAGTTTCTCACTCTTTAAGCTGACCCATAGATTTTTTGATTGATTCATCTTCTCTGATTCTTTTATTTTCTCATATTTCCATTTCTTGAAGCTCTTCTAAGAAAAACCCACAAAAAATGATTCATTTCTGAAATCAATCACTCTGTTTTCTTGGTTATTTGGGTATTGAGGGATTTGAATTTTTTATTTTCTTTCCAAAGTTGCAATCTTTTCAGTGTATTGTTATTTGGGGGTTTTCTTGATTTGGGTTGGAAAAAAGGGGTGAATCAAAAAGTTGGTTTTTGAGATTTTCTTGGATTTGGGTGTTGTGGGTATTGGTTAAAATTGAGTCTTTTGTTCATTTAAGTTTTTGATCTGTTGGGGGTATTCTTGGAAG</genome_strand>
        <mrna_strand>TTTTTCTTTCTGTAAAGATTCACGTTAAACTTTCCAATTTGATCTCCTCTTCTTCTTCTTTTTTCTACTTTTCTTTCAACATCAAGCAATTTATAGCACCCAAGAAACAAACAAGTTTCTCACTCTTTAAGCTGACCCATAGATTTTTTGATTGATTCATCTTCTCTGATTCTTTTATTTTCTCATATTTCCATTTCTTGAAGCTCTTCTAAGAAAAACCCACAAAAAATGATTCATTTCTGAAATCAATCACTCTGTTTTCTTGGTTATTTGGGTATTGAGGGATTTGAATTTTTTATTTTCTTTCCAAAGTTGCAATCTTTTCAGTGTATTGTTATTTGGGGGTTTTCTTGATTTGGGTTGGAAAAAAGGGGTGAATCAAAAAGTTGGTTTTTGAGATTTTCTTGGATTTGGGTGTTGTGGGTATTGGATAAAATTGAGTCTTTTGTTCATTTAAGATTTTGATCTGCCGGGGGCATTCTTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326000" ref_strand="+" ref_description="SGN-U326000        Tomato 200607 #1 [4 ESTs aligned] genbank/nr: P0466H10.33(evalue: 7e-05, score=50.4)">
      <seq>tgtttcaaaaatatttgtaatctctctcttcttctcctcatccatctcttcatttttggttaattcgtcaggtcatcagtatcatgtcaactcatttggaaatgcctagtagcgggaagctaaccgatattcaaagggatgagttgctattgaagttaattgtagaggttcagaatataaaaactcatgtcagagctcttgagttgcagaactcacagctgccaactaatttaccagcaaaaggaaaaaaagaatcagtccgagttgtttcgcatgaaggactagagaccggagaagatgttcaacagcttgaccaaccaactgaaaaaagaggagttgtggcgaaagggcctctgcagacacctcaaccaccactgagtagaacttccctaaagagaaccctctgtgaaaatccaggtacaacagggggaaagaaggtcaaaatggagttaccagtttttaatggaaagctcaatccaacaatatttgcagattggctatcagctatggaggaatattttgacttgtatgacttgtcagatgatcgaagggttagatttgctaaaatgaagctaactactcttgcaaaagaggtggtgaagtccacaagtaagagttctaatgtattataaaacaatctaagcttaatttaccaatattgcgaataacttaagatttcctttatatcattccactgtacttgcacattcttacgaataaacagaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0064G18-rHkBY/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0064G18.1" temp_strand="-" temp_description="C04HBa0064G18.1  CU927997.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0064G18 sequenced_by:sanger upload_account_name:uk">
        <position start="131376" stop="130048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131076" g_stop="130348" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0064G18.1" gen_strand="-" ref_id="SGN-U326000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0064G18.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131076" e_stop="130348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCAAAAATATTTGTAATCTCTCTCTTCTTCTCCTCATCCATCTCTTCATTTTTGGTTAATTCGTCAGGTCATCAGTATCATGTCAACTCATTTGGAAATGCCTAGTAGCGGGAAGCTAACCGATATTCAAAGGGATGAGTTGCTATTGAAGTTAATTGTAGAGGTTCAGAATATAAAAACTCATGTCAGAGCTCTTGAGTTGCAGAACTCACAGCTGCCAACTAATTTACCAGCAAAAGGAAAAAAAGAATCAGTCCGAGTTGTTTCGCATGAAGGACTAGAGACCGGAGAAGATGTTCAACAGCTTGACCAACCAACTGAAAAAAGAGGAGTTGTGGCGAAAGGGCCTCTGCAGACACCTCAACCACCACTGAGTAGAACTTCCCTAAAGAGAACCCTCTGTGAAAATCCAGGTACAACAGGGGGAAAGAAGGTCAAAATGGAGTTACCAGTTTTTAATGGAAAGCTCAATCCAACAATATTTGCAGATTGGCTATCAGCTATGGAGGAATATTTTGACTTGTATGACTTGTCAGATGATCGAAGGGTTAGATTTGCTAAAATGAAGCTAACTACTCTTGCAAAAGAGGTGGTGAAGTCCACAAGTAAGAGTTCTAATGTATTATAAAACAATCTAAGCTTAATTTACCAATATTGCGAATAACTTAAGATTTCCTTTATATCATTCCACTGTACTTGCACATTCTTACGAATAAACAGAAAGT</genome_strand>
        <mrna_strand>TGTTTCAAAAATATTTGTAATCTCTCTCTTCTTCTCCTCATCCATCTCTTCATTTTTGGTTAATTCGTCAGGTCATCAGTATCATGTCAACTCATTTGGAAATGCCTAGTAGCGGGAAGCTAACCGATATTCAAAGGGATGAGTTGCTATTGAAGTTAATTGTAGAGGTTCAGAATATAAAAACTCATGTCAGAGCTCTTGAGTTGCAGAACTCACAGCTGCCAACTAATTTACCAGCAAAAGGAAAAAAAGAATCAGTCCGAGTTGTTTCGCATGAAGGACTAGAGACCGGAGAAGATGTTCAACAGCTTGACCAACCAACTGAAAAAAGAGGAGTTGTGGCGAAAGGGCCTCTGCAGACACCTCAACCACCACTGAGTAGAACTTCCCTAAAGAGAACCCTCTGTGAAAATCCAGGTACAACAGGGGGAAAGAAGGTCAAAATGGAGTTACCAGTTTTTAATGGAAAGCTCAATCCAACAATATTTGCAGATTGGCTATCAGCTATGGAGGAATATTTTGACTTGTATGACTTGTCAGATGATCGAAGGGTTAGATTTGCTAAAATGAAGCTAACTACTCTTGCAAAAGAGGTGGTGAAGTCCACAAGTAAGAGTTCTAATGTATTATAAAACAATCTAAGCTTAATTTACCAATATTGCGAATAACTTAAGATTTCCTTTATATCATTCCACTGTACTTGCACATTCTTACGAATAAACAGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>10</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3664" PGL_stop="2069"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3664" e_stop="3485"/>
            <exon e_start="2855" e_stop="2563"/>
            <exon e_start="2123" e_stop="2069"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3664" e_stop="3485" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3484" i_stop="2856" i_length="629"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="2855" e_stop="2563" e_length="293"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2562" i_stop="2124" i_length="439"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2123" e_stop="2069" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3664" stop="3485"/>
              <exon start="2855" stop="2563"/>
              <exon start="2123" stop="2069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340128" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCTTTGCTACCTGCACTCCGCCATCTCTTCACCCACTTGCGTTCACCAGCCACATCCATAGCCTTGTCTATCTGCCCAAGATTGTCAATCCCAATTCACACAACACTCTCTTCTCTCTTCCCTCTTTCTTCTTCTTCTTCTTCTCAACCTACTGCTAAGCATCATGCTATTTCTAAAG : AGAGTACTCTGGTGCTGAAACAAGACGAGAGGTTATCAGTGTCTGGTACAGTGAGCGCTCTTGACCCAGCCGTTAATACTAGCACCATTGCTGCTATTGTCACTTCTTTGGGTGGTCCAGCAGCTGCAGTTGGAATTATTCGGTTATCTGGTCCTTCTGCAGTGCCTATAGTTGGTCGTGTATTTCATCCCAAGGTGAAAAAGAAGAAAAGGAGTTCTTCGGAGTGGAGACCGAGTAGTCATGTTGTAGAGTACGGTTTTGTTTCCGACTCTCATGGGAATGTGATTGATGAG : GTTCTGGTGGTTCCTATGCTGGCTCCAAAGTCTTACACTAGAGAAGATGTGATAG</gDNA_template>
            <first_frame> W  L  C  Y  L  H  S  A  I  S  S  P  T  C  V  H  Q  P  H  P  *  P  C  L  S  A  Q  D  C  Q  S  Q  F  T  Q  H  S  L  L  S  S  L  F  L  L  L  L  L  L  N  L  L  L  S  I  M  L  F  L  K  :  R  V  L  W  C  *  N  K  T  R  G  Y  Q  C  L  V  Q  *  A  L  L  T  Q  P  L  I  L  A  P  L  L  L  L  S  L  L  W  V  V  Q  Q  L  Q  L  E  L  F  G  Y  L  V  L  L  Q  C  L  *  L  V  V  Y  F  I  P  R  *  K  R  R  K  G  V  L  R  S  G  D  R  V  V  M  L  *  S  T  V  L  F  P  T  L  M  G  M  *  L  M  R :   F  W  W  F  L  C  W  L  Q  S  L  T  L  E  K  M  *  * </first_frame>
            <second_frame>  G  F  A  T  C  T  P  P  S  L  H  P  L  A  F  T  S  H  I  H  S  L  V  Y  L  P  K  I  V  N  P  N  S  H  N  T  L  F  S  L  P  S  F  F  F  F  F  F  S  T  Y  C  *  A  S  C  Y  F  *  R :   E  Y  S  G  A  E  T  R  R  E  V  I  S  V  W  Y  S  E  R  S  *  P  S  R  *  Y  *  H  H  C  C  Y  C  H  F  F  G  W  S  S  S  C  S  W  N  Y  S  V  I  W  S  F  C  S  A  Y  S  W  S  C  I  S  S  Q  G  E  K  E  E  K  E  F  F  G  V  E  T  E  *  S  C  C  R  V  R  F  C  F  R  L  S  W  E  C  D  *  *   : G  S  G  G  S  Y  A  G  S  K  V  L  H  *  R  R  C  D   </second_frame>
            <third_frame>   A  L  L  P  A  L  R  H  L  F  T  H  L  R  S  P  A  T  S  I  A  L  S  I  C  P  R  L  S  I  P  I  H  T  T  L  S  S  L  F  P  L  S  S  S  S  S  S  Q  P  T  A  K  H  H  A  I  S  K   : E  S  T  L  V  L  K  Q  D  E  R  L  S  V  S  G  T  V  S  A  L  D  P  A  V  N  T  S  T  I  A  A  I  V  T  S  L  G  G  P  A  A  A  V  G  I  I  R  L  S  G  P  S  A  V  P  I  V  G  R  V  F  H  P  K  V  K  K  K  K  R  S  S  S  E  W  R  P  S  S  H  V  V  E  Y  G  F  V  S  D  S  H  G  N  V  I  D  E  :  V  L  V  V  P  M  L  A  P  K  S  Y  T  R  E  D  V  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3662" stop="3485"/>
                    <exon start="2855" stop="2563"/>
                    <exon start="2123" stop="2070"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALLPALRHLFTHLRSPATSIALSICPRLSIPIHTTLSSLFPLSSSSSSQPTAKHHAISKESTLVLKQDERLSVSGTVSALDPAVNTSTIAAIVTSLGGPAAAVGIIRLSGPSAVPIVGRVFHPKVKKKKRSSSEWRPSSHVVEYGFVSDSHGNVIDEVLVVPMLAPKSYTREDVI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="25840" PGL_stop="26613"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25840" e_stop="26170"/>
            <exon e_start="26287" e_stop="26335"/>
            <exon e_start="26410" e_stop="26613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25840" e_stop="26170" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="26171" i_stop="26286" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26287" e_stop="26335" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.917" acc_prob="0.995">
            <gDNA_intron_boundary i_start="26336" i_stop="26409" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26410" e_stop="26613" e_length="204"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25840" stop="26170"/>
              <exon start="26287" stop="26335"/>
              <exon start="26410" stop="26613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332057" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAAACAAACAAAAAAACAGAATGGGTACACTAGCCAATGAGAGTTTCAGCATTGAGCTACAGCAGCTTGATGCAGCTACTGATACTGCAAGGAATCAGAGAACTCAATGGCTCCTTGCTTCTCCTAATCCTCCAAATTTTTTCCATCAACTCATTAATTCTGTTAAAAAAAATGTTGACAGAACCACAAAACGATCAACAAATGGTGTTTTCTTTTCATTCTTGAAAGGATTGTTTCCAATCCTTAGCTGGGGAAGAAATTATAAATGTACAATGTTTAAGCATGACATAATGGCTGGCTTAACTCTTGCTAGTCTCTGCATACCACAG : AGTATTGGATATGCTAATCTTGCGAAACTTGATCCTCAATATGGCTTAT : ACGCTAGTGTTGTTCCACCACTTATATATGCTGTGATGGGAAGTTCGCGAGAGATTGCTATTGGCCCTGTTGCTGTAGTGTCACTTCTTATTTCTGCACTGATTTCCAAGATTATAGACCCTGCTGTCGATCCAATCGCTTACAGGAATCTTGTTTTCACTGCCACATTCTTCACTGGTGCATTTCAGGCTGTTTTTGGACTAT</gDNA_template>
            <first_frame> N  K  Q  T  K  K  Q  N  G  Y  T  S  Q  *  E  F  Q  H  *  A  T  A  A  *  C  S  Y  *  Y  C  K  E  S  E  N  S  M  A  P  C  F  S  *  S  S  K  F  F  P  S  T  H  *  F  C  *  K  K  C  *  Q  N  H  K  T  I  N  K  W  C  F  L  F  I  L  E  R  I  V  S  N  P  *  L  G  K  K  L  *  M  Y  N  V  *  A  *  H  N  G  W  L  N  S  C  *  S  L  H  T  T   : E  Y  W  I  C  *  S  C  E  T  *  S  S  I  W  L  I :   R  *  C  C  S  T  T  Y  I  C  C  D  G  K  F  A  R  D  C  Y  W  P  C  C  C  S  V  T  S  Y  F  C  T  D  F  Q  D  Y  R  P  C  C  R  S  N  R  L  Q  E  S  C  F  H  C  H  I  L  H  W  C  I  S  G  C  F  W  T   </first_frame>
            <second_frame>  T  N  K  Q  K  N  R  M  G  T  L  A  N  E  S  F  S  I  E  L  Q  Q  L  D  A  A  T  D  T  A  R  N  Q  R  T  Q  W  L  L  A  S  P  N  P  P  N  F  F  H  Q  L  I  N  S  V  K  K  N  V  D  R  T  T  K  R  S  T  N  G  V  F  F  S  F  L  K  G  L  F  P  I  L  S  W  G  R  N  Y  K  C  T  M  F  K  H  D  I  M  A  G  L  T  L  A  S  L  C  I  P  Q  :  S  I  G  Y  A  N  L  A  K  L  D  P  Q  Y  G  L   : Y  A  S  V  V  P  P  L  I  Y  A  V  M  G  S  S  R  E  I  A  I  G  P  V  A  V  V  S  L  L  I  S  A  L  I  S  K  I  I  D  P  A  V  D  P  I  A  Y  R  N  L  V  F  T  A  T  F  F  T  G  A  F  Q  A  V  F  G  L  </second_frame>
            <third_frame>   Q  T  N  K  K  T  E  W  V  H  *  P  M  R  V  S  A  L  S  Y  S  S  L  M  Q  L  L  I  L  Q  G  I  R  E  L  N  G  S  L  L  L  L  I  L  Q  I  F  S  I  N  S  L  I  L  L  K  K  M  L  T  E  P  Q  N  D  Q  Q  M  V  F  S  F  H  S  *  K  D  C  F  Q  S  L  A  G  E  E  I  I  N  V  Q  C  L  S  M  T  *  W  L  A  *  L  L  L  V  S  A  Y  H  R :   V  L  D  M  L  I  L  R  N  L  I  L  N  M  A  Y  :  T  L  V  L  F  H  H  L  Y  M  L  *  W  E  V  R  E  R  L  L  L  A  L  L  L  *  C  H  F  L  F  L  H  *  F  P  R  L  *  T  L  L  S  I  Q  S  L  T  G  I  L  F  S  L  P  H  S  S  L  V  H  F  R  L  F  L  D  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25841" stop="26170"/>
                    <exon start="26287" stop="26335"/>
                    <exon start="26410" stop="26612"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNKQKNRMGTLANESFSIELQQLDAATDTARNQRTQWLLASPNPPNFFHQLINSVKKNVDRTTKRSTNGVFFSFLKGLFPILSWGRNYKCTMFKHDIMAGLTLASLCIPQSIGYANLAKLDPQYGLYASVVPPLIYAVMGSSREIAIGPVAVVSLLISALISKIIDPAVDPIAYRNLVFTATFFTGAFQAVFGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="27472" PGL_stop="29465"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27472" e_stop="27550"/>
            <exon e_start="27641" e_stop="27927"/>
            <exon e_start="28557" e_stop="28750"/>
            <exon e_start="28844" e_stop="28920"/>
            <exon e_start="29053" e_stop="29129"/>
            <exon e_start="29347" e_stop="29465"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="0.948"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27472" e_stop="27550" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27551" i_stop="27640" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27641" e_stop="27927" e_length="287"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="27928" i_stop="28556" i_length="629"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28557" e_stop="28750" e_length="194"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28751" i_stop="28843" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28844" e_stop="28920" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="28921" i_stop="29052" i_length="132"/>
          </intron>
          <exon e_serial="5" e_score="0.948">
            <gDNA_exon_boundary e_start="29053" e_stop="29129" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29130" i_stop="29346" i_length="217"/>
          </intron>
          <exon e_serial="6" e_score="0.975">
            <gDNA_exon_boundary e_start="29347" e_stop="29465" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27472" stop="27550"/>
              <exon start="27641" stop="27927"/>
              <exon start="28557" stop="28750"/>
              <exon start="28844" stop="28920"/>
              <exon start="29053" stop="29129"/>
              <exon start="29347" stop="29465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326080" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGATGGTAACAAAGAAATGGTAGCAATTGGATGTATGAACCTTGTGGGATCTTTAACTTCTTGCTACACAGCAACTG : GTTCATTTTCGAGAACAGCAGTGAACTACAGTGCAGGATGTGAAACTGTTGTGTCAAACATAGTTATGGCAATAACAGTTCTGATATCATTAGAGTTGTTGACAAAGCTATTATACTATACTCCATTGGCAATACTAGCATCAATTATCATATCAGCTTTACCAGGATTAATTGACATTACTGAAGCATTTCACATTTGGAAAGTTGACAAGACAGATTTCATCATTTGCATTGCTGCTTTCTTGGGAGTACTCTTTGGCTCCGTCGAAATCGGTCTTATAATAGCG : GTTGGAATTTCATTTGGTAAAATAATACTTGGTACCATTAGACCAAGTGTAGAACTACAAGGTAGACTACCTGGAACAGACACTTTTTGTGACATAACTCAATTTCCAGTGGCTACTGAAACTCAAGGAGTTTTGGTTATTAGAGTGAACAATGCTTCACTATGCTTTGCAAATGCTAATTTCATAAGAGGAAG : GATATTGAGCATAGTGACAAATAGAAGTGAAGAGCAGTCCAAGGGAAAACTTCGTATCTTAGTGCTAGATATGTCAA : GTGTAATGAGCATTGATACATCAGGAATTGTTGCATTGGAGGAGTTGAACAGAGAATTGGTATCACAAGGCATACAA : TTAGCTATAGCAAATCCAAGGTGGGAAGTAATGAACAAGTTGAAGGTAGCAAAATTTGTAGATGAACTTGGAAATAGGTGGATTTTCCTCAGTGTTGGAGATGCTGTAGATGCCTGTTT</gDNA_template>
            <first_frame> L  D  G  N  K  E  M  V  A  I  G  C  M  N  L  V  G  S  L  T  S  C  Y  T  A  T   : G  S  F  S  R  T  A  V  N  Y  S  A  G  C  E  T  V  V  S  N  I  V  M  A  I  T  V  L  I  S  L  E  L  L  T  K  L  L  Y  Y  T  P  L  A  I  L  A  S  I  I  I  S  A  L  P  G  L  I  D  I  T  E  A  F  H  I  W  K  V  D  K  T  D  F  I  I  C  I  A  A  F  L  G  V  L  F  G  S  V  E  I  G  L  I  I  A  :  V  G  I  S  F  G  K  I  I  L  G  T  I  R  P  S  V  E  L  Q  G  R  L  P  G  T  D  T  F  C  D  I  T  Q  F  P  V  A  T  E  T  Q  G  V  L  V  I  R  V  N  N  A  S  L  C  F  A  N  A  N  F  I  R  G  R :   I  L  S  I  V  T  N  R  S  E  E  Q  S  K  G  K  L  R  I  L  V  L  D  M  S   : S  V  M  S  I  D  T  S  G  I  V  A  L  E  E  L  N  R  E  L  V  S  Q  G  I  Q  :  L  A  I  A  N  P  R  W  E  V  M  N  K  L  K  V  A  K  F  V  D  E  L  G  N  R  W  I  F  L  S  V  G  D  A  V  D  A  C   </first_frame>
            <second_frame>  L  M  V  T  K  K  W  *  Q  L  D  V  *  T  L  W  D  L  *  L  L  A  T  Q  Q  L  :  V  H  F  R  E  Q  Q  *  T  T  V  Q  D  V  K  L  L  C  Q  T  *  L  W  Q  *  Q  F  *  Y  H  *  S  C  *  Q  S  Y  Y  T  I  L  H  W  Q  Y  *  H  Q  L  S  Y  Q  L  Y  Q  D  *  L  T  L  L  K  H  F  T  F  G  K  L  T  R  Q  I  S  S  F  A  L  L  L  S  W  E  Y  S  L  A  P  S  K  S  V  L  *  *  R :   L  E  F  H  L  V  K  *  Y  L  V  P  L  D  Q  V  *  N  Y  K  V  D  Y  L  E  Q  T  L  F  V  T  *  L  N  F  Q  W  L  L  K  L  K  E  F  W  L  L  E  *  T  M  L  H  Y  A  L  Q  M  L  I  S  *  E  E   : G  Y  *  A  *  *  Q  I  E  V  K  S  S  P  R  E  N  F  V  S  *  C  *  I  C  Q  :  V  *  *  A  L  I  H  Q  E  L  L  H  W  R  S  *  T  E  N  W  Y  H  K  A  Y  N :   *  L  *  Q  I  Q  G  G  K  *  *  T  S  *  R  *  Q  N  L  *  M  N  L  E  I  G  G  F  S  S  V  L  E  M  L  *  M  P  V  </second_frame>
            <third_frame>   *  W  *  Q  R  N  G  S  N  W  M  Y  E  P  C  G  I  F  N  F  L  L  H  S  N  W :   F  I  F  E  N  S  S  E  L  Q  C  R  M  *  N  C  C  V  K  H  S  Y  G  N  N  S  S  D  I  I  R  V  V  D  K  A  I  I  L  Y  S  I  G  N  T  S  I  N  Y  H  I  S  F  T  R  I  N  *  H  Y  *  S  I  S  H  L  E  S  *  Q  D  R  F  H  H  L  H  C  C  F  L  G  S  T  L  W  L  R  R  N  R  S  Y  N  S   : G  W  N  F  I  W  *  N  N  T  W  Y  H  *  T  K  C  R  T  T  R  *  T  T  W  N  R  H  F  L  *  H  N  S  I  S  S  G  Y  *  N  S  R  S  F  G  Y  *  S  E  Q  C  F  T  M  L  C  K  C  *  F  H  K  R  K  :  D  I  E  H  S  D  K  *  K  *  R  A  V  Q  G  K  T  S  Y  L  S  A  R  Y  V  K :   C  N  E  H  *  Y  I  R  N  C  C  I  G  G  V  E  Q  R  I  G  I  T  R  H  T   : I  S  Y  S  K  S  K  V  G  S  N  E  Q  V  E  G  S  K  I  C  R  *  T  W  K  *  V  D  F  P  Q  C  W  R  C  C  R  C  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27472" stop="27550"/>
                    <exon start="27641" stop="27927"/>
                    <exon start="28557" stop="28750"/>
                    <exon start="28844" stop="28920"/>
                    <exon start="29053" stop="29129"/>
                    <exon start="29347" stop="29463"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDGNKEMVAIGCMNLVGSLTSCYTATGSFSRTAVNYSAGCETVVSNIVMAITVLISLELLTKLLYYTPLAILASIIISALPGLIDITEAFHIWKVDKTDFIICIAAFLGVLFGSVEIGLIIAVGISFGKIILGTIRPSVELQGRLPGTDTFCDITQFPVATETQGVLVIRVNNASLCFANANFIRGRILSIVTNRSEEQSKGKLRILVLDMSSVMSIDTSGIVALEELNRELVSQGIQLAIANPRWEVMNKLKVAKFVDELGNRWIFLSVGDAVDAC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="88134" PGL_stop="85141"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88134" e_stop="87920"/>
            <exon e_start="87604" e_stop="87377"/>
            <exon e_start="87273" e_stop="87135"/>
            <exon e_start="86993" e_stop="86750"/>
            <exon e_start="85364" e_stop="85304"/>
            <exon e_start="85205" e_stop="85141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.691" acc_prob="0.602" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.824" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.327" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88134" e_stop="87920" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87919" i_stop="87605" i_length="315"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87604" e_stop="87377" e_length="228"/>
          </exon>
          <intron i_serial="2" don_prob="0.691" acc_prob="0.602">
            <gDNA_intron_boundary i_start="87376" i_stop="87274" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87273" e_stop="87135" e_length="139"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.824">
            <gDNA_intron_boundary i_start="87134" i_stop="86994" i_length="141"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86993" e_stop="86750" e_length="244"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.975">
            <gDNA_intron_boundary i_start="86749" i_stop="85365" i_length="1385"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85364" e_stop="85304" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.327" acc_prob="0.995">
            <gDNA_intron_boundary i_start="85303" i_stop="85206" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85205" e_stop="85141" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88134" stop="87920"/>
              <exon start="87604" stop="87377"/>
              <exon start="87273" stop="87135"/>
              <exon start="86993" stop="86750"/>
              <exon start="85364" stop="85304"/>
              <exon start="85205" stop="85141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328122" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCACGATCAAGCAGTAGCAAGTATCTATCTTGCAGCCATCAATTATGTGAACTGGGTCCTAACTGCCGGAGTCCAAAGGAACATTGCCCTTATACTGTTAATTACTATTCTGAAAATACATCAACTTCGGGGTTCCTTTTCGAGGACCAATTGCATTTGACTTCAGTTGGTGGACATGAACATCAAGGTTCTGTGCTAGCTCCTATTGTTATAGG : CTGTGGTAGCAAACAAAGTGGCAATTATTTGAGTGGAGCTGCTCCAGATGGGGTGATGGGATTAGGGCCAGGAGAAATTTCTGTTCCAAGTTTGCTGGCGAAGTCTGGATTTGTTCCACGCTCATTCTCATTGTGTTTTGGAAAGAGCAATTCTGGCACAATTTTCTTTGGTGATAAAGGGCCTGAAAATCAAAGACGAAGTTCATTTGTATCTTTGGATGAAAATTA : CAATACCTATGTTGTTGAAGTTCAACATTATTGTGTTGGGGGTACCTGTCCAAAGCAAAGTGGATTTCAAGCCTTAGTTGATAGTGGGTCTTCCTTCACTTTTCTCCCTTCTGAAATCTTTACAAAAGTAGTAACTGAG : TTTGAAGAGCAAATGAACGTTACGAGGTTAGCTATAGAAGATTTTCCTTGCTGCTATAAGGCTAGGTAAAGTCTGCTCTCGTGAAAATGCTGTTTTTTTGTTTTATTTACTTGTAGATTATTCTCCATATGCTTTTTTATGCAGTTCACAAGGTTTACCGAACATTCCTAGCATGAAACTTTTGTTAGCTGCTAATCAGAGCTTTGTAATTCAGAACCCCATGTTTACCATCTCCAGTAGTCAG : GGTGATAACTTTTATTGTGTGGGTCTCCTACCTATTGAAGGAATGATTGGTATTATTGGAC : AGAACTTTATGGAGGGATATCGATTGGTGTTTGATTGGGAAAACATGAAGTTGGGTTGGTCTCGC</gDNA_template>
            <first_frame> A  R  S  S  S  S  K  Y  L  S  C  S  H  Q  L  C  E  L  G  P  N  C  R  S  P  K  E  H  C  P  Y  T  V  N  Y  Y  S  E  N  T  S  T  S  G  F  L  F  E  D  Q  L  H  L  T  S  V  G  G  H  E  H  Q  G  S  V  L  A  P  I  V  I  G :   C  G  S  K  Q  S  G  N  Y  L  S  G  A  A  P  D  G  V  M  G  L  G  P  G  E  I  S  V  P  S  L  L  A  K  S  G  F  V  P  R  S  F  S  L  C  F  G  K  S  N  S  G  T  I  F  F  G  D  K  G  P  E  N  Q  R  R  S  S  F  V  S  L  D  E  N  Y :   N  T  Y  V  V  E  V  Q  H  Y  C  V  G  G  T  C  P  K  Q  S  G  F  Q  A  L  V  D  S  G  S  S  F  T  F  L  P  S  E  I  F  T  K  V  V  T  E  :  F  E  E  Q  M  N  V  T  R  L  A  I  E  D  F  P  C  C  Y  K  A  R  *  S  L  L  S  *  K  C  C  F  F  V  L  F  T  C  R  L  F  S  I  C  F  F  M  Q  F  T  R  F  T  E  H  S  *  H  E  T  F  V  S  C  *  S  E  L  C  N  S  E  P  H  V  Y  H  L  Q  *  S   : G  *  *  L  L  L  C  G  S  P  T  Y  *  R  N  D  W  Y  Y  W  T :   E  L  Y  G  G  I  S  I  G  V  *  L  G  K  H  E  V  G  L  V  S  </first_frame>
            <second_frame>  H  D  Q  A  V  A  S  I  Y  L  A  A  I  N  Y  V  N  W  V  L  T  A  G  V  Q  R  N  I  A  L  I  L  L  I  T  I  L  K  I  H  Q  L  R  G  S  F  S  R  T  N  C  I  *  L  Q  L  V  D  M  N  I  K  V  L  C  *  L  L  L  L  *   : A  V  V  A  N  K  V  A  I  I  *  V  E  L  L  Q  M  G  *  W  D  *  G  Q  E  K  F  L  F  Q  V  C  W  R  S  L  D  L  F  H  A  H  S  H  C  V  L  E  R  A  I  L  A  Q  F  S  L  V  I  K  G  L  K  I  K  D  E  V  H  L  Y  L  W  M  K  I   : T  I  P  M  L  L  K  F  N  I  I  V  L  G  V  P  V  Q  S  K  V  D  F  K  P  *  L  I  V  G  L  P  S  L  F  S  L  L  K  S  L  Q  K  *  *  L  S :   L  K  S  K  *  T  L  R  G  *  L  *  K  I  F  L  A  A  I  R  L  G  K  V  C  S  R  E  N  A  V  F  L  F  Y  L  L  V  D  Y  S  P  Y  A  F  L  C  S  S  Q  G  L  P  N  I  P  S  M  K  L  L  L  A  A  N  Q  S  F  V  I  Q  N  P  M  F  T  I  S  S  S  Q  :  G  D  N  F  Y  C  V  G  L  L  P  I  E  G  M  I  G  I  I  G   : Q  N  F  M  E  G  Y  R  L  V  F  D  W  E  N  M  K  L  G  W  S  R </second_frame>
            <third_frame>   T  I  K  Q  *  Q  V  S  I  L  Q  P  S  I  M  *  T  G  S  *  L  P  E  S  K  G  T  L  P  L  Y  C  *  L  L  F  *  K  Y  I  N  F  G  V  P  F  R  G  P  I  A  F  D  F  S  W  W  T  *  T  S  R  F  C  A  S  S  Y  C  Y  R  :  L  W  *  Q  T  K  W  Q  L  F  E  W  S  C  S  R  W  G  D  G  I  R  A  R  R  N  F  C  S  K  F  A  G  E  V  W  I  C  S  T  L  I  L  I  V  F  W  K  E  Q  F  W  H  N  F  L  W  *  *  R  A  *  K  S  K  T  K  F  I  C  I  F  G  *  K  L  :  Q  Y  L  C  C  *  S  S  T  L  L  C  W  G  Y  L  S  K  A  K  W  I  S  S  L  S  *  *  W  V  F  L  H  F  S  P  F  *  N  L  Y  K  S  S  N  *   : V  *  R  A  N  E  R  Y  E  V  S  Y  R  R  F  S  L  L  L  *  G  *  V  K  S  A  L  V  K  M  L  F  F  C  F  I  Y  L  *  I  I  L  H  M  L  F  Y  A  V  H  K  V  Y  R  T  F  L  A  *  N  F  C  *  L  L  I  R  A  L  *  F  R  T  P  C  L  P  S  P  V  V  R :   V  I  T  F  I  V  W  V  S  Y  L  L  K  E  *  L  V  L  L  D  :  R  T  L  W  R  D  I  D  W  C  L  I  G  K  T  *  S  W  V  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88134" stop="87920"/>
                    <exon start="87604" stop="87377"/>
                    <exon start="87273" stop="87135"/>
                    <exon start="86993" stop="86925"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARSSSSKYLSCSHQLCELGPNCRSPKEHCPYTVNYYSENTSTSGFLFEDQLHLTSVGGHEHQGSVLAPIVIGCGSKQSGNYLSGAAPDGVMGLGPGEISVPSLLAKSGFVPRSFSLCFGKSNSGTIFFGDKGPENQRRSSFVSLDENYNTYVVEVQHYCVGGTCPKQSGFQALVDSGSSFTFLPSEIFTKVVTEFEEQMNVTRLAIEDFPCCYKAR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86956" stop="86750"/>
                    <exon start="85364" stop="85304"/>
                    <exon start="85205" stop="85141"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIFLAAIRLGKVCSRENAVFLFYLLVDYSPYAFLCSSQGLPNIPSMKLLLAANQSFVIQNPMFTISSSQGDNFYCVGLLPIEGMIGIIGQNFMEGYRLVFDWENMKLGWSR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="101062" PGL_stop="105786"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101062" e_stop="101384"/>
            <exon e_start="105030" e_stop="105786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="0.988"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="101062" e_stop="101384" e_length="323"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="101385" i_stop="105029" i_length="3645"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="105030" e_stop="105786" e_length="757"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101062" stop="101384"/>
              <exon start="105030" stop="105786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTAAAACCCTAGAAATTCTCTTCATCTCAAGCCATTAGCATTTTACAAATCCAATTTTCTTCCGAAAGAACAGTTTTTCTTGGTGTCATTTTTATATAAATTATATACGTGTATTGATATAAATATATATATAATTAACAGATCAATATAATTTAGGAATACTGTATTGTTTTGCTTAGATTTGTATTAATTTGTTTCTGATTCTAACAATTGTGTGCTTTTGTTTCTGGGATTAGGGTTTCTCTCGTTTCTGTTTTGGAACTAGGGTTTTCACCATCTTTTTGGTTGAAAGTTTTGGTGTCCAAGTGACTATTTGCACTG : GTTTGTCTAAGTGATTTTTTTCACTTGGCGGCTAAGATGTCGGACTACCCTGTGCTTGATAATCGTCCAATTAATAAATGGAAAGTAGCAGAATTAAGGGATGAGCTTAAGAGGAGGAACTTAACGACAAAAGGTTTGAAGGATGATCTGGTTAGACGATTAAATGAAGCTATCTGCATAGAAATGGAAGCTGCTGCAGTTAAAGAGAGTAAGGATGATGATCGTGACATTGATCCTGCCAGTGGTCTTGAAGATACTGAACCCGAGCCTGATCCTGTTAAATTGGTTGATGATGTTCTGGAGCATCCCCCAATTGAAGTCACTCATGGTTCTGAACATATTACTGATGCTACATGTGGTCTTGAAGAAGCTCAACCAAATAGCAATCCTGATATATTGGTTGATAACGTTCAGAAGCAAAAACAAGATGAATTTAACAGTATTGACAGTGATGTTGCTAGGGCCACCACCAAGAATTGTCTTGTTGGAATAGACCAGAACAAAGTCATGGATGAGGTTGCAACTGGAGGTAATGATGATGTTCTGAAGCATCACCAAAATGAAGTTAACGAAATTGATGGTGATGCCAGTGCTAGCACCAAGAATGCTCTTGTTGAAATAGACCAGAATAAAGTCTTGGATGAGGTTGCAACTGGAGATACTGCTGCTGGAGAATCAGACCGTTTGGAGGCACCGGTTGGTAGCACTAGTGTTATAAATGAGATTGCATCTAATAAGGAACACAAGGTTATTGATT</gDNA_template>
            <first_frame> N  *  N  P  R  N  S  L  H  L  K  P  L  A  F  Y  K  S  N  F  L  P  K  E  Q  F  F  L  V  S  F  L  Y  K  L  Y  T  C  I  D  I  N  I  Y  I  I  N  R  S  I  *  F  R  N  T  V  L  F  C  L  D  L  Y  *  F  V  S  D  S  N  N  C  V  L  L  F  L  G  L  G  F  L  S  F  L  F  W  N  *  G  F  H  H  L  F  G  *  K  F  W  C  P  S  D  Y  L  H  W :   F  V  *  V  I  F  F  T  W  R  L  R  C  R  T  T  L  C  L  I  I  V  Q  L  I  N  G  K  *  Q  N  *  G  M  S  L  R  G  G  T  *  R  Q  K  V  *  R  M  I  W  L  D  D  *  M  K  L  S  A  *  K  W  K  L  L  Q  L  K  R  V  R  M  M  I  V  T  L  I  L  P  V  V  L  K  I  L  N  P  S  L  I  L  L  N  W  L  M  M  F  W  S  I  P  Q  L  K  S  L  M  V  L  N  I  L  L  M  L  H  V  V  L  K  K  L  N  Q  I  A  I  L  I  Y  W  L  I  T  F  R  S  K  N  K  M  N  L  T  V  L  T  V  M  L  L  G  P  P  P  R  I  V  L  L  E  *  T  R  T  K  S  W  M  R  L  Q  L  E  V  M  M  M  F  *  S  I  T  K  M  K  L  T  K  L  M  V  M  P  V  L  A  P  R  M  L  L  L  K  *  T  R  I  K  S  W  M  R  L  Q  L  E  I  L  L  L  E  N  Q  T  V  W  R  H  R  L  V  A  L  V  L  *  M  R  L  H  L  I  R  N  T  R  L  L  I </first_frame>
            <second_frame>  I  K  T  L  E  I  L  F  I  S  S  H  *  H  F  T  N  P  I  F  F  R  K  N  S  F  S  W  C  H  F  Y  I  N  Y  I  R  V  L  I  *  I  Y  I  *  L  T  D  Q  Y  N  L  G  I  L  Y  C  F  A  *  I  C  I  N  L  F  L  I  L  T  I  V  C  F  C  F  W  D  *  G  F  S  R  F  C  F  G  T  R  V  F  T  I  F  L  V  E  S  F  G  V  Q  V  T  I  C  T   : G  L  S  K  *  F  F  S  L  G  G  *  D  V  G  L  P  C  A  *  *  S  S  N  *  *  M  E  S  S  R  I  K  G  *  A  *  E  E  E  L  N  D  K  R  F  E  G  *  S  G  *  T  I  K  *  S  Y  L  H  R  N  G  S  C  C  S  *  R  E  *  G  *  *  S  *  H  *  S  C  Q  W  S  *  R  Y  *  T  R  A  *  S  C  *  I  G  *  *  C  S  G  A  S  P  N  *  S  H  S  W  F  *  T  Y  Y  *  C  Y  M  W  S  *  R  S  S  T  K  *  Q  S  *  Y  I  G  *  *  R  S  E  A  K  T  R  *  I  *  Q  Y  *  Q  *  C  C  *  G  H  H  Q  E  L  S  C  W  N  R  P  E  Q  S  H  G  *  G  C  N  W  R  *  *  *  C  S  E  A  S  P  K  *  S  *  R  N  *  W  *  C  Q  C  *  H  Q  E  C  S  C  *  N  R  P  E  *  S  L  G  *  G  C  N  W  R  Y  C  C  W  R  I  R  P  F  G  G  T  G  W  *  H  *  C  Y  K  *  D  C  I  *  *  G  T  Q  G  Y  *   </second_frame>
            <third_frame>   L  K  P  *  K  F  S  S  S  Q  A  I  S  I  L  Q  I  Q  F  S  S  E  R  T  V  F  L  G  V  I  F  I  *  I  I  Y  V  Y  *  Y  K  Y  I  Y  N  *  Q  I  N  I  I  *  E  Y  C  I  V  L  L  R  F  V  L  I  C  F  *  F  *  Q  L  C  A  F  V  S  G  I  R  V  S  L  V  S  V  L  E  L  G  F  S  P  S  F  W  L  K  V  L  V  S  K  *  L  F  A  L  :  V  C  L  S  D  F  F  H  L  A  A  K  M  S  D  Y  P  V  L  D  N  R  P  I  N  K  W  K  V  A  E  L  R  D  E  L  K  R  R  N  L  T  T  K  G  L  K  D  D  L  V  R  R  L  N  E  A  I  C  I  E  M  E  A  A  A  V  K  E  S  K  D  D  D  R  D  I  D  P  A  S  G  L  E  D  T  E  P  E  P  D  P  V  K  L  V  D  D  V  L  E  H  P  P  I  E  V  T  H  G  S  E  H  I  T  D  A  T  C  G  L  E  E  A  Q  P  N  S  N  P  D  I  L  V  D  N  V  Q  K  Q  K  Q  D  E  F  N  S  I  D  S  D  V  A  R  A  T  T  K  N  C  L  V  G  I  D  Q  N  K  V  M  D  E  V  A  T  G  G  N  D  D  V  L  K  H  H  Q  N  E  V  N  E  I  D  G  D  A  S  A  S  T  K  N  A  L  V  E  I  D  Q  N  K  V  L  D  E  V  A  T  G  D  T  A  A  G  E  S  D  R  L  E  A  P  V  G  S  T  S  V  I  N  E  I  A  S  N  K  E  H  K  V  I  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101373" stop="101384"/>
                    <exon start="105030" stop="105785"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFALVCLSDFFHLAAKMSDYPVLDNRPINKWKVAELRDELKRRNLTTKGLKDDLVRRLNEAICIEMEAAAVKESKDDDRDIDPASGLEDTEPEPDPVKLVDDVLEHPPIEVTHGSEHITDATCGLEEAQPNSNPDILVDNVQKQKQDEFNSIDSDVARATTKNCLVGIDQNKVMDEVATGGNDDVLKHHQNEVNEIDGDASASTKNALVEIDQNKVLDEVATGDTAAGESDRLEAPVGSTSVINEIASNKEHKVID</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="105828" PGL_stop="108876"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105828" e_stop="106557"/>
            <exon e_start="106650" e_stop="106952"/>
            <exon e_start="107613" e_stop="107798"/>
            <exon e_start="107891" e_stop="108042"/>
            <exon e_start="108394" e_stop="108876"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.425" acc_prob="0.998" e_score="0.977"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.510" e_score="1.000"/>
          <exon-intron don_prob="0.538" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="105828" e_stop="106557" e_length="730"/>
          </exon>
          <intron i_serial="1" don_prob="0.425" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106558" i_stop="106649" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106650" e_stop="106952" e_length="303"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106953" i_stop="107612" i_length="660"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107613" e_stop="107798" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.510">
            <gDNA_intron_boundary i_start="107799" i_stop="107890" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107891" e_stop="108042" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.538" acc_prob="0.950">
            <gDNA_intron_boundary i_start="108043" i_stop="108393" i_length="351"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="108394" e_stop="108876" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105828" stop="106298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106217" stop="106557"/>
              <exon start="106650" stop="106952"/>
              <exon start="107613" stop="107798"/>
              <exon start="107891" stop="108042"/>
              <exon start="108394" stop="108876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319663" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGATGGTTCTATTCCAGTCAGTAGCACTAGACAGGATGTTGAGGATATGAAAATTTCATCTTATGAGGGAGTGCTTGAGGACAACCTTAGGGGACAAGAAAATGATGTGGAGGTAACCCCAGTAACATCAGAGGAAGCATTGAAAAACCACAGCATTAAGTTGGATAATGAGGGTCTGAAACTCTCAGACATGGATGCTGAGCCAGATATGTCCAATCCAGCCACTCAGGTATATGAGGTCAACCCTAATTTAGGGTCTCAAGTAAAATCTGACTCATTTTCTACTGATACTTTGACCATTAATGAAAATAAAGATTTAAATGATAATTTGAATGCTGATAATGTCAAATTAGAAACTGAAGTTGTTAGGCAAGAGATGGAGCTGCAGTCATCCAGCAAAGACCTATCAGGTGTTGGTAGCTCTCATCCATTGGATGGTCAGATGCCACATGAGATGCAGGGTCTTGTTGGAGAAACTGATGATGACAAATCTTCAGATGTGAAATTTAGCATGAAAAATGACAATGCAGATCAGGTTTCTGTTGACGTTTCCAAGGTAGAGCATGATTTCGAGAGTAAGACTCCAAATAATAGTGAGCAACCCGATATACAGTTTGAAAAAGCTAGAACTTTAGGTGATGTTGAAGAGCCTAGTTTGTCACCCATGAAAATTGAGGCATCTGCGGAAGATACACACGATCTTGCTGTTTCTGGTGATGATAGAAAAG : ATTTTAGCAAGATAGCCGATGTAGTGGATGGTGAGAATATGGAAAAGATTAACTTGGATCAGTCTTCTGCTGATGATTCCATGGAGGAGGATGTAGTAGAGACAAAACATGTGGATTTTGATCATATTTCTAAGAAAGAGAATGACAAGACTGATGAGTTTATTACGGGAATGACAGAAGAGCCCAAAGTTCGACCAAGTGGTTCTTCTGATGCAATGCAGCTAGACATTCCTTCTGAGAAGGTTGCGTCTCAAGAAACTAAAGATAAGTCTCTTGCTTTGTCAGAGAAGAGAAAGTTTCAAG : ATGAAGCAGGAGGTGGGAGTAAAGAGCCTGCAAAAAGGCAGCGTAGATGGAACACTGAGAAGACTGCTGAACCCCAAAATTCTAGTATTGCTTTAACAAAGAAGGTTGTTCAGCCCACTCCTATCAAACCCATCCTTGGCAGGACTAACTCTACAGTTGGTGGGGATTCACCCAAGGAGCGCTTTG : TACCAAAGTCTTCAAAAACAGCCACTACTTCTCTCAAAATTGAGAATTTCTTGCGGCCTTTTACGCTGAAAGCTGTGCAAGAGCTCCTTGCAAGGACTGGTGAAGTCTGCAGTTTCTGGATGGACCAGATAAAGACCCATTGCTATGTCACG : TATTCTTCGGTAGAAGAAGCCACAGAGACCAGAAACGCGGTGTACAATCTCCAATGGCCACCAAATGGTGGTCGTCTCCTGGTTGCAGATTTTGTTGATCCTCAACAGGTGCAAACCAAGATAGAGGGTCGGGAACCTGCTTCTCCACCGAAAGTTACCAGTCCTGCTGTGCCTGCTTCATCCTTTGTTCAAACACCACCTGCTCAGCAGCAGGGTCGCAAACAACAAGCTGAGTTGGAACATTCACTCACACGCCAGCCACCTCCTGCTCCTCCTAGTGCTCCTCCAACAAAAGAGATGCTGCCTTCACCTGTTGCTGATAAAAATGATCCCCCTATTGTTACTTTGGATGACCTCTTCAGAAAGACCAAAGTCACTCCCCGTATCTATTATTTACCGCTGACAGATGAAGAAGTTGCTAAAAAGCTTGCCATTAGGGGAAATGCTAAGCCTTGAGATATTAGGTAAATAAAGGGGCATGTT</gDNA_template>
            <first_frame> W  D  G  S  I  P  V  S  S  T  R  Q  D  V  E  D  M  K  I  S  S  Y  E  G  V  L  E  D  N  L  R  G  Q  E  N  D  V  E  V  T  P  V  T  S  E  E  A  L  K  N  H  S  I  K  L  D  N  E  G  L  K  L  S  D  M  D  A  E  P  D  M  S  N  P  A  T  Q  V  Y  E  V  N  P  N  L  G  S  Q  V  K  S  D  S  F  S  T  D  T  L  T  I  N  E  N  K  D  L  N  D  N  L  N  A  D  N  V  K  L  E  T  E  V  V  R  Q  E  M  E  L  Q  S  S  S  K  D  L  S  G  V  G  S  S  H  P  L  D  G  Q  M  P  H  E  M  Q  G  L  V  G  E  T  D  D  D  K  S  S  D  V  K  F  S  M  K  N  D  N  A  D  Q  V  S  V  D  V  S  K  V  E  H  D  F  E  S  K  T  P  N  N  S  E  Q  P  D  I  Q  F  E  K  A  R  T  L  G  D  V  E  E  P  S  L  S  P  M  K  I  E  A  S  A  E  D  T  H  D  L  A  V  S  G  D  D  R  K   : D  F  S  K  I  A  D  V  V  D  G  E  N  M  E  K  I  N  L  D  Q  S  S  A  D  D  S  M  E  E  D  V  V  E  T  K  H  V  D  F  D  H  I  S  K  K  E  N  D  K  T  D  E  F  I  T  G  M  T  E  E  P  K  V  R  P  S  G  S  S  D  A  M  Q  L  D  I  P  S  E  K  V  A  S  Q  E  T  K  D  K  S  L  A  L  S  E  K  R  K  F  Q   : D  E  A  G  G  G  S  K  E  P  A  K  R  Q  R  R  W  N  T  E  K  T  A  E  P  Q  N  S  S  I  A  L  T  K  K  V  V  Q  P  T  P  I  K  P  I  L  G  R  T  N  S  T  V  G  G  D  S  P  K  E  R  F   : V  P  K  S  S  K  T  A  T  T  S  L  K  I  E  N  F  L  R  P  F  T  L  K  A  V  Q  E  L  L  A  R  T  G  E  V  C  S  F  W  M  D  Q  I  K  T  H  C  Y  V  T  :  Y  S  S  V  E  E  A  T  E  T  R  N  A  V  Y  N  L  Q  W  P  P  N  G  G  R  L  L  V  A  D  F  V  D  P  Q  Q  V  Q  T  K  I  E  G  R  E  P  A  S  P  P  K  V  T  S  P  A  V  P  A  S  S  F  V  Q  T  P  P  A  Q  Q  Q  G  R  K  Q  Q  A  E  L  E  H  S  L  T  R  Q  P  P  P  A  P  P  S  A  P  P  T  K  E  M  L  P  S  P  V  A  D  K  N  D  P  P  I  V  T  L  D  D  L  F  R  K  T  K  V  T  P  R  I  Y  Y  L  P  L  T  D  E  E  V  A  K  K  L  A  I  R  G  N  A  K  P  *  D  I  R  *  I  K  G  H  V </first_frame>
            <second_frame>  G  M  V  L  F  Q  S  V  A  L  D  R  M  L  R  I  *  K  F  H  L  M  R  E  C  L  R  T  T  L  G  D  K  K  M  M  W  R  *  P  Q  *  H  Q  R  K  H  *  K  T  T  A  L  S  W  I  M  R  V  *  N  S  Q  T  W  M  L  S  Q  I  C  P  I  Q  P  L  R  Y  M  R  S  T  L  I  *  G  L  K  *  N  L  T  H  F  L  L  I  L  *  P  L  M  K  I  K  I  *  M  I  I  *  M  L  I  M  S  N  *  K  L  K  L  L  G  K  R  W  S  C  S  H  P  A  K  T  Y  Q  V  L  V  A  L  I  H  W  M  V  R  C  H  M  R  C  R  V  L  L  E  K  L  M  M  T  N  L  Q  M  *  N  L  A  *  K  M  T  M  Q  I  R  F  L  L  T  F  P  R  *  S  M  I  S  R  V  R  L  Q  I  I  V  S  N  P  I  Y  S  L  K  K  L  E  L  *  V  M  L  K  S  L  V  C  H  P  *  K  L  R  H  L  R  K  I  H  T  I  L  L  F  L  V  M  I  E  K  :  I  L  A  R  *  P  M  *  W  M  V  R  I  W  K  R  L  T  W  I  S  L  L  L  M  I  P  W  R  R  M  *  *  R  Q  N  M  W  I  L  I  I  F  L  R  K  R  M  T  R  L  M  S  L  L  R  E  *  Q  K  S  P  K  F  D  Q  V  V  L  L  M  Q  C  S  *  T  F  L  L  R  R  L  R  L  K  K  L  K  I  S  L  L  L  C  Q  R  R  E  S  F  K  :  M  K  Q  E  V  G  V  K  S  L  Q  K  G  S  V  D  G  T  L  R  R  L  L  N  P  K  I  L  V  L  L  *  Q  R  R  L  F  S  P  L  L  S  N  P  S  L  A  G  L  T  L  Q  L  V  G  I  H  P  R  S  A  L  :  Y  Q  S  L  Q  K  Q  P  L  L  L  S  K  L  R  I  S  C  G  L  L  R  *  K  L  C  K  S  S  L  Q  G  L  V  K  S  A  V  S  G  W  T  R  *  R  P  I  A  M  S  R :   I  L  R  *  K  K  P  Q  R  P  E  T  R  C  T  I  S  N  G  H  Q  M  V  V  V  S  W  L  Q  I  L  L  I  L  N  R  C  K  P  R  *  R  V  G  N  L  L  L  H  R  K  L  P  V  L  L  C  L  L  H  P  L  F  K  H  H  L  L  S  S  R  V  A  N  N  K  L  S  W  N  I  H  S  H  A  S  H  L  L  L  L  L  V  L  L  Q  Q  K  R  C  C  L  H  L  L  L  I  K  M  I  P  L  L  L  L  W  M  T  S  S  E  R  P  K  S  L  P  V  S  I  I  Y  R  *  Q  M  K  K  L  L  K  S  L  P  L  G  E  M  L  S  L  E  I  L  G  K  *  R  G  M   </second_frame>
            <third_frame>   G  W  F  Y  S  S  Q  *  H  *  T  G  C  *  G  Y  E  N  F  I  L  *  G  S  A  *  G  Q  P  *  G  T  R  K  *  C  G  G  N  P  S  N  I  R  G  S  I  E  K  P  Q  H  *  V  G  *  *  G  S  E  T  L  R  H  G  C  *  A  R  Y  V  Q  S  S  H  S  G  I  *  G  Q  P  *  F  R  V  S  S  K  I  *  L  I  F  Y  *  Y  F  D  H  *  *  K  *  R  F  K  *  *  F  E  C  *  *  C  Q  I  R  N  *  S  C  *  A  R  D  G  A  A  V  I  Q  Q  R  P  I  R  C  W  *  L  S  S  I  G  W  S  D  A  T  *  D  A  G  S  C  W  R  N  *  *  *  Q  I  F  R  C  E  I  *  H  E  K  *  Q  C  R  S  G  F  C  *  R  F  Q  G  R  A  *  F  R  E  *  D  S  K  *  *  *  A  T  R  Y  T  V  *  K  S  *  N  F  R  *  C  *  R  A  *  F  V  T  H  E  N  *  G  I  C  G  R  Y  T  R  S  C  C  F  W  *  *  *  K  R :   F  *  Q  D  S  R  C  S  G  W  *  E  Y  G  K  D  *  L  G  S  V  F  C  *  *  F  H  G  G  G  C  S  R  D  K  T  C  G  F  *  S  Y  F  *  E  R  E  *  Q  D  *  *  V  Y  Y  G  N  D  R  R  A  Q  S  S  T  K  W  F  F  *  C  N  A  A  R  H  S  F  *  E  G  C  V  S  R  N  *  R  *  V  S  C  F  V  R  E  E  K  V  S  R :   *  S  R  R  W  E  *  R  A  C  K  K  A  A  *  M  E  H  *  E  D  C  *  T  P  K  F  *  Y  C  F  N  K  E  G  C  S  A  H  S  Y  Q  T  H  P  W  Q  D  *  L  Y  S  W  W  G  F  T  Q  G  A  L  C :   T  K  V  F  K  N  S  H  Y  F  S  Q  N  *  E  F  L  A  A  F  Y  A  E  S  C  A  R  A  P  C  K  D  W  *  S  L  Q  F  L  D  G  P  D  K  D  P  L  L  C  H   : V  F  F  G  R  R  S  H  R  D  Q  K  R  G  V  Q  S  P  M  A  T  K  W  W  S  S  P  G  C  R  F  C  *  S  S  T  G  A  N  Q  D  R  G  S  G  T  C  F  S  T  E  S  Y  Q  S  C  C  A  C  F  I  L  C  S  N  T  T  C  S  A  A  G  S  Q  T  T  S  *  V  G  T  F  T  H  T  P  A  T  S  C  S  S  *  C  S  S  N  K  R  D  A  A  F  T  C  C  *  *  K  *  S  P  Y  C  Y  F  G  *  P  L  Q  K  D  Q  S  H  S  P  Y  L  L  F  T  A  D  R  *  R  S  C  *  K  A  C  H  *  G  K  C  *  A  L  R  Y  *  V  N  K  G  A  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105828" stop="106557"/>
                    <exon start="106650" stop="106952"/>
                    <exon start="107613" stop="107798"/>
                    <exon start="107891" stop="108042"/>
                    <exon start="108394" stop="108849"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1824</number_coding_nucleotides>
                  <number_encoded_amino_acids>608</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WDGSIPVSSTRQDVEDMKISSYEGVLEDNLRGQENDVEVTPVTSEEALKNHSIKLDNEGLKLSDMDAEPDMSNPATQVYEVNPNLGSQVKSDSFSTDTLTINENKDLNDNLNADNVKLETEVVRQEMELQSSSKDLSGVGSSHPLDGQMPHEMQGLVGETDDDKSSDVKFSMKNDNADQVSVDVSKVEHDFESKTPNNSEQPDIQFEKARTLGDVEEPSLSPMKIEASAEDTHDLAVSGDDRKDFSKIADVVDGENMEKINLDQSSADDSMEEDVVETKHVDFDHISKKENDKTDEFITGMTEEPKVRPSGSSDAMQLDIPSEKVASQETKDKSLALSEKRKFQDEAGGGSKEPAKRQRRWNTEKTAEPQNSSIALTKKVVQPTPIKPILGRTNSTVGGDSPKERFVPKSSKTATTSLKIENFLRPFTLKAVQELLARTGEVCSFWMDQIKTHCYVTYSSVEEATETRNAVYNLQWPPNGGRLLVADFVDPQQVQTKIEGREPASPPKVTSPAVPASSFVQTPPAQQQGRKQQAELEHSLTRQPPPAPPSAPPTKEMLPSPVADKNDPPIVTLDDLFRKTKVTPRIYYLPLTDEEVAKKLAIRGNAKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="110776" PGL_stop="112440"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110776" e_stop="110936"/>
            <exon e_start="111038" e_stop="111139"/>
            <exon e_start="111988" e_stop="112056"/>
            <exon e_start="112163" e_stop="112440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.981"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.971"/>
          <exon-intron don_prob="0.995" acc_prob="0.814" e_score="0.942"/>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="110776" e_stop="110936" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="110937" i_stop="111037" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="111038" e_stop="111139" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111140" i_stop="111987" i_length="848"/>
          </intron>
          <exon e_serial="3" e_score="0.942">
            <gDNA_exon_boundary e_start="111988" e_stop="112056" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.814">
            <gDNA_intron_boundary i_start="112057" i_stop="112162" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="0.928">
            <gDNA_exon_boundary e_start="112163" e_stop="112440" e_length="278"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110776" stop="110936"/>
              <exon start="111038" stop="111139"/>
              <exon start="111988" stop="112056"/>
              <exon start="112163" stop="112440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335410" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAGTTTCACAGATCTTTGTGTAATCAAGAATGGTGACTACCGGGAAGAAATCGAAGAGGACTCATGAGAGCATTAACAACAGATTGGCTCTCGTAATGAAGAGTGGAAAGTACACTCTTGGTTACAAGACTGTTCTCAAGACTCTCAGGACCTCAAAAG : GGAAGTTGATATTGATATCAAACAACTGCCCACCTTTGAGGAAATCTGAGATTGAGTATTATGCTATGCTCGCTAAAGTTGGTGTTCACCATTTCAATGGAA : ACAATGTTGATCTTGGTACAGCATGTGGAAAGTTCCACCGTGTGTCATGCCTGAGCATCATTGACCCAG : GTGATTCCGACATTATCAAGTCTCTGCCTGGAGATCAGTAAGAGTTGATGATCTAGTAGTCATTCTCTTTAAACAATTTAGAAAATGTTTTGCGGGGCTGCTCTAAACCATTTTACTGATGTTGAGAGAATCTGTAGTATCTTTTTGTTCTTTGTGTTTTGGAGTTATACTGAGATTCTAGAGTATTTTGGTATTATCTAGTTTTGTTGGTTTTATCATTTCTCCATATGTTTGTTGAGGCCAAATACATTATGATTTATTCATAGATCAATTTTCCT</gDNA_template>
            <first_frame> L  S  F  T  D  L  C  V  I  K  N  G  D  Y  R  E  E  I  E  E  D  S  *  E  H  *  Q  Q  I  G  S  R  N  E  E  W  K  V  H  S  W  L  Q  D  C  S  Q  D  S  Q  D  L  K  R :   E  V  D  I  D  I  K  Q  L  P  T  F  E  E  I  *  D  *  V  L  C  Y  A  R  *  S  W  C  S  P  F  Q  W  K :   Q  C  *  S  W  Y  S  M  W  K  V  P  P  C  V  M  P  E  H  H  *  P  R :   *  F  R  H  Y  Q  V  S  A  W  R  S  V  R  V  D  D  L  V  V  I  L  F  K  Q  F  R  K  C  F  A  G  L  L  *  T  I  L  L  M  L  R  E  S  V  V  S  F  C  S  L  C  F  G  V  I  L  R  F  *  S  I  L  V  L  S  S  F  V  G  F  I  I  S  P  Y  V  C  *  G  Q  I  H  Y  D  L  F  I  D  Q  F  S  </first_frame>
            <second_frame>  L  V  S  Q  I  F  V  *  S  R  M  V  T  T  G  K  K  S  K  R  T  H  E  S  I  N  N  R  L  A  L  V  M  K  S  G  K  Y  T  L  G  Y  K  T  V  L  K  T  L  R  T  S  K   : G  K  L  I  L  I  S  N  N  C  P  P  L  R  K  S  E  I  E  Y  Y  A  M  L  A  K  V  G  V  H  H  F  N  G   : N  N  V  D  L  G  T  A  C  G  K  F  H  R  V  S  C  L  S  I  I  D  P   : G  D  S  D  I  I  K  S  L  P  G  D  Q  *  E  L  M  I  *  *  S  F  S  L  N  N  L  E  N  V  L  R  G  C  S  K  P  F  Y  *  C  *  E  N  L  *  Y  L  F  V  L  C  V  L  E  L  Y  *  D  S  R  V  F  W  Y  Y  L  V  L  L  V  L  S  F  L  H  M  F  V  E  A  K  Y  I  M  I  Y  S  *  I  N  F  P </second_frame>
            <third_frame>   *  F  H  R  S  L  C  N  Q  E  W  *  L  P  G  R  N  R  R  G  L  M  R  A  L  T  T  D  W  L  S  *  *  R  V  E  S  T  L  L  V  T  R  L  F  S  R  L  S  G  P  Q  K  :  G  S  *  Y  *  Y  Q  T  T  A  H  L  *  G  N  L  R  L  S  I  M  L  C  S  L  K  L  V  F  T  I  S  M  E  :  T  M  L  I  L  V  Q  H  V  E  S  S  T  V  C  H  A  *  A  S  L  T  Q  :  V  I  P  T  L  S  S  L  C  L  E  I  S  K  S  *  *  S  S  S  H  S  L  *  T  I  *  K  M  F  C  G  A  A  L  N  H  F  T  D  V  E  R  I  C  S  I  F  L  F  F  V  F  W  S  Y  T  E  I  L  E  Y  F  G  I  I  *  F  C  W  F  Y  H  F  S  I  C  L  L  R  P  N  T  L  *  F  I  H  R  S  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110801" stop="110936"/>
                    <exon start="111038" stop="111139"/>
                    <exon start="111988" stop="112056"/>
                    <exon start="112163" stop="112203"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRMVTTGKKSKRTHESINNRLALVMKSGKYTLGYKTVLKTLRTSKGKLILISNNCPPLRKSEIEYYAMLAKVGVHHFNGNNVDLGTACGKFHRVSCLSIIDPGDSDIIKSLPGDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="128712" PGL_stop="129199"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128712" e_stop="129199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="128712" e_stop="129199" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128712" stop="129199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329835" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTCTTCCTGTAAAGATTCACGTTAAACTTTCCAATTTGATCTCCTCTTCTTCTTCTTTTTTCTACTTTTCTTTCAACATCAAGCAATTTATAGCACCCAAGAAACAAACAAGTTTCTCACTCTTTAAGCTGACCCATAGATTTTTTGATTGATTCATCTTCTCTGATTCTTTTATTTTCTCATATTTCCATTTCTTGAAGCTCTTCTAAGAAAAACCCACAAAAAATGATTCATTTCTGAAATCAATCACTCTGTTTTCTTGGTTATTTGGGTATTGAGGGATTTGAATTTTTTATTTTCTTTCCAAAGTTGCAATCTTTTCAGTGTATTGTTATTTGGGGGTTTTCTTGATTTGGGTTGGAAAAAAGGGGTGAATCAAAAAGTTGGTTTTTGAGATTTTCTTGGATTTGGGTGTTGTGGGTATTGGTTAAAATTGAGTCTTTTGTTCATTTAAGTTTTTGATCTGTTGGGGGTATTCTTGGAAG</gDNA_template>
            <first_frame> F  F  F  L  *  R  F  T  L  N  F  P  I  *  S  P  L  L  L  L  F  S  T  F  L  S  T  S  S  N  L  *  H  P  R  N  K  Q  V  S  H  S  L  S  *  P  I  D  F  L  I  D  S  S  S  L  I  L  L  F  S  H  I  S  I  S  *  S  S  S  K  K  N  P  Q  K  M  I  H  F  *  N  Q  S  L  C  F  L  G  Y  L  G  I  E  G  F  E  F  F  I  F  F  P  K  L  Q  S  F  Q  C  I  V  I  W  G  F  S  *  F  G  L  E  K  R  G  E  S  K  S  W  F  L  R  F  S  W  I  W  V  L  W  V  L  V  K  I  E  S  F  V  H  L  S  F  *  S  V  G  G  I  L  G   </first_frame>
            <second_frame>  F  S  S  C  K  D  S  R  *  T  F  Q  F  D  L  L  F  F  F  F  F  L  L  F  F  Q  H  Q  A  I  Y  S  T  Q  E  T  N  K  F  L  T  L  *  A  D  P  *  I  F  *  L  I  H  L  L  *  F  F  Y  F  L  I  F  P  F  L  E  A  L  L  R  K  T  H  K  K  *  F  I  S  E  I  N  H  S  V  F  L  V  I  W  V  L  R  D  L  N  F  L  F  S  F  Q  S  C  N  L  F  S  V  L  L  F  G  G  F  L  D  L  G  W  K  K  G  V  N  Q  K  V  G  F  *  D  F  L  G  F  G  C  C  G  Y  W  L  K  L  S  L  L  F  I  *  V  F  D  L  L  G  V  F  L  E  </second_frame>
            <third_frame>   F  L  P  V  K  I  H  V  K  L  S  N  L  I  S  S  S  S  S  F  F  Y  F  S  F  N  I  K  Q  F  I  A  P  K  K  Q  T  S  F  S  L  F  K  L  T  H  R  F  F  D  *  F  I  F  S  D  S  F  I  F  S  Y  F  H  F  L  K  L  F  *  E  K  P  T  K  N  D  S  F  L  K  S  I  T  L  F  S  W  L  F  G  Y  *  G  I  *  I  F  Y  F  L  S  K  V  A  I  F  S  V  Y  C  Y  L  G  V  F  L  I  W  V  G  K  K  G  *  I  K  K  L  V  F  E  I  F  L  D  L  G  V  V  G  I  G  *  N  *  V  F  C  S  F  K  F  L  I  C  W  G  Y  S  W  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0064G18.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="131076" PGL_stop="130348"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131076" e_stop="130348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="131076" e_stop="130348" e_length="729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131076" stop="130348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326000" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTCAAAAATATTTGTAATCTCTCTCTTCTTCTCCTCATCCATCTCTTCATTTTTGGTTAATTCGTCAGGTCATCAGTATCATGTCAACTCATTTGGAAATGCCTAGTAGCGGGAAGCTAACCGATATTCAAAGGGATGAGTTGCTATTGAAGTTAATTGTAGAGGTTCAGAATATAAAAACTCATGTCAGAGCTCTTGAGTTGCAGAACTCACAGCTGCCAACTAATTTACCAGCAAAAGGAAAAAAAGAATCAGTCCGAGTTGTTTCGCATGAAGGACTAGAGACCGGAGAAGATGTTCAACAGCTTGACCAACCAACTGAAAAAAGAGGAGTTGTGGCGAAAGGGCCTCTGCAGACACCTCAACCACCACTGAGTAGAACTTCCCTAAAGAGAACCCTCTGTGAAAATCCAGGTACAACAGGGGGAAAGAAGGTCAAAATGGAGTTACCAGTTTTTAATGGAAAGCTCAATCCAACAATATTTGCAGATTGGCTATCAGCTATGGAGGAATATTTTGACTTGTATGACTTGTCAGATGATCGAAGGGTTAGATTTGCTAAAATGAAGCTAACTACTCTTGCAAAAGAGGTGGTGAAGTCCACAAGTAAGAGTTCTAATGTATTATAAAACAATCTAAGCTTAATTTACCAATATTGCGAATAACTTAAGATTTCCTTTATATCATTCCACTGTACTTGCACATTCTTACGAATAAACAGAAAGT</gDNA_template>
            <first_frame> C  F  K  N  I  C  N  L  S  L  L  L  L  I  H  L  F  I  F  G  *  F  V  R  S  S  V  S  C  Q  L  I  W  K  C  L  V  A  G  S  *  P  I  F  K  G  M  S  C  Y  *  S  *  L  *  R  F  R  I  *  K  L  M  S  E  L  L  S  C  R  T  H  S  C  Q  L  I  Y  Q  Q  K  E  K  K  N  Q  S  E  L  F  R  M  K  D  *  R  P  E  K  M  F  N  S  L  T  N  Q  L  K  K  E  E  L  W  R  K  G  L  C  R  H  L  N  H  H  *  V  E  L  P  *  R  E  P  S  V  K  I  Q  V  Q  Q  G  E  R  R  S  K  W  S  Y  Q  F  L  M  E  S  S  I  Q  Q  Y  L  Q  I  G  Y  Q  L  W  R  N  I  L  T  C  M  T  C  Q  M  I  E  G  L  D  L  L  K  *  S  *  L  L  L  Q  K  R  W  *  S  P  Q  V  R  V  L  M  Y  Y  K  T  I  *  A  *  F  T  N  I  A  N  N  L  R  F  P  L  Y  H  S  T  V  L  A  H  S  Y  E  *  T  E  S </first_frame>
            <second_frame>  V  S  K  I  F  V  I  S  L  F  F  S  S  S  I  S  S  F  L  V  N  S  S  G  H  Q  Y  H  V  N  S  F  G  N  A  *  *  R  E  A  N  R  Y  S  K  G  *  V  A  I  E  V  N  C  R  G  S  E  Y  K  N  S  C  Q  S  S  *  V  A  E  L  T  A  A  N  *  F  T  S  K  R  K  K  R  I  S  P  S  C  F  A  *  R  T  R  D  R  R  R  C  S  T  A  *  P  T  N  *  K  K  R  S  C  G  E  R  A  S  A  D  T  S  T  T  T  E  *  N  F  P  K  E  N  P  L  *  K  S  R  Y  N  R  G  K  E  G  Q  N  G  V  T  S  F  *  W  K  A  Q  S  N  N  I  C  R  L  A  I  S  Y  G  G  I  F  *  L  V  *  L  V  R  *  S  K  G  *  I  C  *  N  E  A  N  Y  S  C  K  R  G  G  E  V  H  K  *  E  F  *  C  I  I  K  Q  S  K  L  N  L  P  I  L  R  I  T  *  D  F  L  Y  I  I  P  L  Y  L  H  I  L  T  N  K  Q  K   </second_frame>
            <third_frame>   F  Q  K  Y  L  *  S  L  S  S  S  P  H  P  S  L  H  F  W  L  I  R  Q  V  I  S  I  M  S  T  H  L  E  M  P  S  S  G  K  L  T  D  I  Q  R  D  E  L  L  L  K  L  I  V  E  V  Q  N  I  K  T  H  V  R  A  L  E  L  Q  N  S  Q  L  P  T  N  L  P  A  K  G  K  K  E  S  V  R  V  V  S  H  E  G  L  E  T  G  E  D  V  Q  Q  L  D  Q  P  T  E  K  R  G  V  V  A  K  G  P  L  Q  T  P  Q  P  P  L  S  R  T  S  L  K  R  T  L  C  E  N  P  G  T  T  G  G  K  K  V  K  M  E  L  P  V  F  N  G  K  L  N  P  T  I  F  A  D  W  L  S  A  M  E  E  Y  F  D  L  Y  D  L  S  D  D  R  R  V  R  F  A  K  M  K  L  T  T  L  A  K  E  V  V  K  S  T  S  K  S  S  N  V  L  *  N  N  L  S  L  I  Y  Q  Y  C  E  *  L  K  I  S  F  I  S  F  H  C  T  C  T  F  L  R  I  N  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0064G18.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131056" stop="130445"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLSSSPHPSLHFWLIRQVISIMSTHLEMPSSGKLTDIQRDELLLKLIVEVQNIKTHVRALELQNSQLPTNLPAKGKKESVRVVSHEGLETGEDVQQLDQPTEKRGVVAKGPLQTPQPPLSRTSLKRTLCENPGTTGGKKVKMELPVFNGKLNPTIFADWLSAMEEYFDLYDLSDDRRVRFAKMKLTTLAKEVVKSTSKSSNVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 32 chains have been computed
$ 
$ memory statistics:
$ 21056 bytes spliced alignments in total
$ 10 spliced alignments have been stored
$ 2105 bytes was the average size of a spliced alignment
$ 15640 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1737 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 39 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-20 08:44:09
-->
