<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 17:21:51"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568511" ref_strand="+" ref_description="SGN-E568511 [12804]">
      <seq>aaaccttcaaaaccattttttcctacttactagagtatcaagaaagtatggcttagcaagaacaccaatggttgcatttctgattcaattgaaattctcgatccaaaagcttttgcagtagtagcttctggtgttgttcatcctcctattgttgcatctttcaatgatagaattcgtccacttctcgactgcatagacaagctccgccatcttaacataatgcaagaaggtatccagctcccaacgatcgtagtagtcggggatcaatcttctggaaagtccagtgttcttgaatcccttggctgggatcagtcttcctagaggacaaggcatttgcaccagggtccctcttgttatgaggctgcagaatgatccaaacatcactgcaacaaatcttcagttggagtacaataacaagtcactccctgttgatgaaattggcattgcagatgctatcattcttgctactgatgaaattgctggacatggtaaaggtatatctaacaancctttaacattagtagttcacacaaacggtgtccctgatttgaccatggtggatttacctggtattactagagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="+" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="4500" stop="5681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4800" g_stop="5381" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="+" ref_id="SGN-E568511" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4800" e_stop="5381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTTAAGAACCATTTTTTCCTACTTACTAGAGTATCAAGAAAGTATGGCTTACCAA-AACATCAATGGTTGCATTTCTGATTCAATTGAAATTCTTGATCCAAAACCTCTTGCAGTAGTAGCTTCTGGTGTTGTTCATCCTCCTATTGTTGCATCTTTCAATGATAGAATTCGTCCACTTCTCGACTGTATAGACAAGCTCCGCCATCTCAACATCATGCAAGAAGGTATCCAGCTCCCAACGATCGTAGTAGTCGGAGATCAATCTTCTGGAAAGTCCAGTGTTCTTGAATCCCTT-GCTGGGATCAGTCTTCCTAGAGGACAAGGCATTTGCACCAGGGTCCCTCTTGTTATGAGGCTGCAGAATGATCCAAACATCACAGCACCAAGTCTTCAGTTGGAGTACAATAACAAGTCACTCCCTGTTGATGAAATTGGCATTGCAGATGCTATCATTCTTGCTACTGATGAGATTGCTGGACATGGTAAAGGTATATCTAACTACCCTTTAACACTAGTAGTTAAGAAAAATGGTGTCCCTGATTTGACCATGGTGGATTTACCTGGTATTACTAGAGTTG</genome_strand>
        <mrna_strand>AAACCTTCAAAACCATTTTTTCCTACTTACTAGAGTATCAAGAAAGTATGGCTTAGCAAGAACACCAATGGTTGCATTTCTGATTCAATTGAAATTCTCGATCCAAAAGCTTTTGCAGTAGTAGCTTCTGGTGTTGTTCATCCTCCTATTGTTGCATCTTTCAATGATAGAATTCGTCCACTTCTCGACTGCATAGACAAGCTCCGCCATCTTAACATAATGCAAGAAGGTATCCAGCTCCCAACGATCGTAGTAGTCGGGGATCAATCTTCTGGAAAGTCCAGTGTTCTTGAATCCCTTGGCTGGGATCAGTCTTCCTAGAGGACAAGGCATTTGCACCAGGGTCCCTCTTGTTATGAGGCTGCAGAATGATCCAAACATCACTGCAACAAATCTTCAGTTGGAGTACAATAACAAGTCACTCCCTGTTGATGAAATTGGCATTGCAGATGCTATCATTCTTGCTACTGATGAAATTGCTGGACATGGTAAAGGTATATCTAACAANCCTTTAACATTAGTAGTTCACACAAACGGTGTCCCTGATTTGACCATGGTGGATTTACCTGGTATTACTAGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702191" ref_strand="+" ref_description="SGN-E702191 [FA18AC01]">
      <seq>taagaaccattttttcctacttactagagtatcaagaaagtatggcttaccaaaacatcaatggttgcatttctgattcaattgaaattcttgatccaaaacctcttgcagtagtagcttctggtgttgttcatcctcctattgttgcatctttcaatgatagaattcgtccacttctcgactgtatagacaagctccgccatctcaacatcatgcaagaaggtatccagctcccaacgatcgtagtagtcggagatcaatcttctggaaagtccagtgttcttgaatcccttgctgggatcagtcttcctagaggacaaggcatttgcaccagggtccctcttgttatgaggctgcagaatgatccaaacatcacagcaccaagtcttcagttggagtacaataacaagtcactccctgttgatgaaattggcattgcagatgctatcattcttgctactgatgagattgctggacatggtaaaggtatatctaactaccctttaacactagtagttaagaaaaatggtgtccctgatttgaccatggtggatttacctggtattactagagttgctgtacaaggtcaacctgaagacatttatgagcaaatttacgatattattatgaaatatattgtccctgaggaaagcataatcttgaatgttttgtcagctactgttgatttccctacttgcgagtctattagaatgtctcagaaagtggacaagacaggggaaaggactctggctgttgtgacaaaagctgataaagcccctgaagggctgcttgaaaggttaccgcggatgaagtgaatatagggcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="+" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="4506" stop="5933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4806" g_stop="5633" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="827" r_length="827" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="+" ref_id="SGN-E702191" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4806" e_stop="5633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAACCATTTTTTCCTACTTACTAGAGTATCAAGAAAGTATGGCTTACCAAAACATCAATGGTTGCATTTCTGATTCAATTGAAATTCTTGATCCAAAACCTCTTGCAGTAGTAGCTTCTGGTGTTGTTCATCCTCCTATTGTTGCATCTTTCAATGATAGAATTCGTCCACTTCTCGACTGTATAGACAAGCTCCGCCATCTCAACATCATGCAAGAAGGTATCCAGCTCCCAACGATCGTAGTAGTCGGAGATCAATCTTCTGGAAAGTCCAGTGTTCTTGAATCCCTTGCTGGGATCAGTCTTCCTAGAGGACAAGGCATTTGCACCAGGGTCCCTCTTGTTATGAGGCTGCAGAATGATCCAAACATCACAGCACCAAGTCTTCAGTTGGAGTACAATAACAAGTCACTCCCTGTTGATGAAATTGGCATTGCAGATGCTATCATTCTTGCTACTGATGAGATTGCTGGACATGGTAAAGGTATATCTAACTACCCTTTAACACTAGTAGTTAAGAAAAATGGTGTCCCTGATTTGACCATGGTGGATTTACCTGGTATTACTAGAGTTGCTGTACAAGGTCAACCTGAAGACATTTATGAGCAAATTTACGATATTATTATGAAATATATTGTCCCTGAGGAAAGCATAATCTTGAATGTTTTGTCAGCTACTGTTGATTTCCCTACTTGCGAGTCTATTAGAATGTCTCAGAAAGTGGACAAGACAGGGGAAAGGACTCTGGCTGTTGTGACAAAAGCTGATAAAGCCCCTGAAGGGCTGCTTGAAAAGGTTACCGCGGATGAAGTGAATATAGGGCTTG</genome_strand>
        <mrna_strand>TAAGAACCATTTTTTCCTACTTACTAGAGTATCAAGAAAGTATGGCTTACCAAAACATCAATGGTTGCATTTCTGATTCAATTGAAATTCTTGATCCAAAACCTCTTGCAGTAGTAGCTTCTGGTGTTGTTCATCCTCCTATTGTTGCATCTTTCAATGATAGAATTCGTCCACTTCTCGACTGTATAGACAAGCTCCGCCATCTCAACATCATGCAAGAAGGTATCCAGCTCCCAACGATCGTAGTAGTCGGAGATCAATCTTCTGGAAAGTCCAGTGTTCTTGAATCCCTTGCTGGGATCAGTCTTCCTAGAGGACAAGGCATTTGCACCAGGGTCCCTCTTGTTATGAGGCTGCAGAATGATCCAAACATCACAGCACCAAGTCTTCAGTTGGAGTACAATAACAAGTCACTCCCTGTTGATGAAATTGGCATTGCAGATGCTATCATTCTTGCTACTGATGAGATTGCTGGACATGGTAAAGGTATATCTAACTACCCTTTAACACTAGTAGTTAAGAAAAATGGTGTCCCTGATTTGACCATGGTGGATTTACCTGGTATTACTAGAGTTGCTGTACAAGGTCAACCTGAAGACATTTATGAGCAAATTTACGATATTATTATGAAATATATTGTCCCTGAGGAAAGCATAATCTTGAATGTTTTGTCAGCTACTGTTGATTTCCCTACTTGCGAGTCTATTAGAATGTCTCAGAAAGTGGACAAGACAGGGGAAAGGACTCTGGCTGTTGTGACAAAAGCTGATAAAGCCCCTGAAGGGCTGCTTG-AAAGGTTACCGCGGATGAAGTGAATATAGGGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450347" ref_strand="+" ref_description="SGN-E450347 [cSTS-9-I7]">
      <seq>aaaccattttttcctacttacgggagtatcaagagagtatggcttaccaaaacaccaatgattgcatttctgattcaattgaaattctcaatgcaaaacctcttgcagtagtagcttctggtgttgttcatcctcctattgttgcatctttcaatgaattcttgatggaagagatcatggttttacaggaaacaaatgggattagattgccaaacttccttcctcgagctgttttccttaatgttttgcagagaaaagtgaaggaaattgccgcctctccagaggattttgtggggaaactgtggaattacttagagcgagttgttatcatagttttaatgtatcattgtgagaactatcctcagcttcagtcttctactagaagagcagcccaaaacttgattgccaagaaaaagaatgaatcagntgattggggaagggaaatcatcgggatggaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="+" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="4510" stop="6690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4809" g_stop="4961" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4962" i_stop="6080" i_length="1119">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6081" g_stop="6390" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="463" r_length="310" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="+" ref_id="SGN-E450347" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4809" e_stop="4961"/>
          <exon e_start="6081" e_stop="6390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCATTTTTTCCTACTTACTAGAGTATCAAGAAAGTATGGCTTACCAAAACATCAATGGTTGCATTTCTGATTCAATTGAAATTCTTGATCCAAAACCTCTTGCAGTAGTAGCTTCTGGTGTTGTTCATCCTCCTATTGTTGCATCTTTCAATGATAGAATTCGTCCACTTCTCGACTGTATAGACAAGCTCCGCCATCTCAACATCATGCAAGAAGGTATCCAGCTCCCAACGATCGTAGTAGTCGGAGATCAATCTTCTGGAAAGTCCAGTGTTCTTGAATCCCTTGCTGGGATCAGTCTTCCTAGAGGACAAGGCATTTGCACCAGGGTCCCTCTTGTTATGAGGCTGCAGAATGATCCAAACATCACAGCACCAAGTCTTCAGTTGGAGTACAATAACAAGTCACTCCCTGTTGATGAAATTGGCATTGCAGATGCTATCATTCTTGCTACTGATGAGATTGCTGGACATGGTAAAGGTATATCTAACTACCCTTTAACACTAGTAGTTAAGAAAAATGGTGTCCCTGATTTGACCATGGTGGATTTACCTGGTATTACTAGAGTTGCTGTACAAGGTCAACCTGAAGACATTTATGAGCAAATTTACGATATTATTATGAAATATATTGTCCCTGAGGAAAGCATAATCTTGAATGTTTTGTCAGCTACTGTTGATTTCCCTACTTGCGAGTCTATTAGAATGTCTCAGAAAGTGGACAAGACAGGGGAAAGGACTCTGGCTGTTGTGACAAAAGCTGATAAAGCCCCTGAAGGGCTGCTTGAAAAGGTTACCGCGGATGAAGTGAATATAGGGCTTGGCTATGTTTGTGTGAGGAATAGAATTGGGAATGAGTCTTATGAAGAAGCAAGGAGTGATGAGGAAAGGCTTTTTTCAACTCATCCACTTCTGTCGAAGATTGATAAATCGATGGTTAGTGTTCCTGTTTTGGCACAAAAGCTGGTGCGTATTCAAGCAAGCATCATTTCAAAATGCTTGCCTGAAATTGTGAGGAAGATCAATGATAGACTTGCTGCCAATCTTGCTGAACTCAACAGGCTTCCTCAACACCTAACTTCTGTAGCGGAAGCACTAACGGCATTTATGCGCATTCTGAGTTCATCAAAGGATTCATTGAAGAAAATTCTATTAAGTGGGGAGTTTGATGAGTATCCTAATGAAAAAGAAATGCACTCTGCAGCTAGAATTGTTGAAATGCTTAACCAATACTCTAATGAGCTGCATACCAAGAATTTTGAGAAAGTGGATGAATTCTTGATGGAAGAGATCATGGTTTTACAGGAATCAAAAGGGATTGGATTGCCAAACTTCCTTCCTCGAGGTGTTTTCCTCAATGTTTTGCAGAGAAAAGTGAAGGAAATTGCTGCCTCTCCAGAGGATTTTGTGGGGAAACTGTGGAATTACTTAGAGCGAGTTGTAATCATAGTTTTAATGCATCATTGTGAGAACTATCCGCAGCTTCAGTCTTCTACTAGAAGAGCAGCCCAAAACTTGATTGCCAAGAAAAAGAATGAATCAGTTGATTGGGTAAGGGAAATCATCGGGATGGAAAAGCT</genome_strand>
        <mrna_strand>AAACCATTTTTTCCTACTTACGGGAGTATCAAGAGAGTATGGCTTACCAAAACACCAATGATTGCATTTCTGATTCAATTGAAATTCTCAATGCAAAACCTCTTGCAGTAGTAGCTTCTGGTGTTGTTCATCCTCCTATTGTTGCATCTTTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATTCTTGATGGAAGAGATCATGGTTTTACAGGAAACAAATGGGATTAGATTGCCAAACTTCCTTCCTCGAGCTGTTTTCCTTAATGTTTTGCAGAGAAAAGTGAAGGAAATTGCCGCCTCTCCAGAGGATTTTGTGGGGAAACTGTGGAATTACTTAGAGCGAGTTGTTATCATAGTTTTAATGTATCATTGTGAGAACTATCCTCAGCTTCAGTCTTCTACTAGAAGAGCAGCCCAAAACTTGATTGCCAAGAAAAAGAATGAATCAGNTGATTGGGGAAGGGAAATCATCGGGATGGAAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589997" ref_strand="+" ref_description="SGN-E589997 [43583]">
      <seq>gaattgttgaaatgcttaatcaatactctaatgagctgcattccaagaattttgagaaagcggatgaattcttgatggaagagatcatggttttacaggaaacaaaagggattggattgccaaacttccttcctcgagctgttttccttaatgttttgcagagaaaagtgaaggaaattgccgcctctccagaggattttgtggggaaactgtggaattacttggagctagttgttatcatagttttaatgtatcattgtgagaactatccacagcttcagtcttctactagaagagcagcccaaaacttgattgccaagaaaaagaatgaatcagttgattgggtaagggaaatcatcgggatggaaaagctgactgattacacttgtaatcctgactatttaactacttatagtaagttcatggctcaacaacacacgttcatggagatcatgaatgatcatgggaagtactccatgataaaccttgaaggagtaggagtaatcgacgttggtcatttgaggaagcatctagatgtggtgcaacaggctttcgatttgaaggatgagaatgatggcctactggaacaattgtgctaatgaggcctggtggattctatggccttgcacataaatgttcagcattcgaaacatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="+" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="5718" stop="6969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6018" g_stop="6669" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="+" ref_id="SGN-E589997" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6018" e_stop="6669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGTTGAAATGCTTAACCAATACTCTAATGAGCTGCATACCAAGAATTTTGAGAAAGTGGATGAATTCTTGATGGAAGAGATCATGGTTTTACAGGAATCAAAAGGGATTGGATTGCCAAACTTCCTTCCTCGAGGTGTTTTCCTCAATGTTTTGCAGAGAAAAGTGAAGGAAATTGCTGCCTCTCCAGAGGATTTTGTGGGGAAACTGTGGAATTACTTAGAGCGAGTTGTAATCATAGTTTTAATGCATCATTGTGAGAACTATCCGCAGCTTCAGTCTTCTACTAGAAGAGCAGCCCAAAACTTGATTGCCAAGAAAAAGAATGAATCAGTTGATTGGGTAAGGGAAATCATCGGGATGGAAAAGCTGACTGATTACACTTGTAATCCTGACTATTTAACTACTTATAGTAAGTTCATGGCTCAACAAAACACGTTCATGGAGATTATGAATGATCATGGGAAGTACTCCATGATAAACCTTGAAGGGGTAGGAGTAATCGACGTTGGTCATTTGAGGAAGCATCTAGATGTGGTGCAACAGGCTTTCGATTTGAA-GATGAGAATGATGGCCTACTGGAA-AATTGTGCTAATGAGG-CTGGTGGATTCTATGGCCTTACACAT-AATGTTCAGCATACGAAACATGAT</genome_strand>
        <mrna_strand>GAATTGTTGAAATGCTTAATCAATACTCTAATGAGCTGCATTCCAAGAATTTTGAGAAAGCGGATGAATTCTTGATGGAAGAGATCATGGTTTTACAGGAAACAAAAGGGATTGGATTGCCAAACTTCCTTCCTCGAGCTGTTTTCCTTAATGTTTTGCAGAGAAAAGTGAAGGAAATTGCCGCCTCTCCAGAGGATTTTGTGGGGAAACTGTGGAATTACTTGGAGCTAGTTGTTATCATAGTTTTAATGTATCATTGTGAGAACTATCCACAGCTTCAGTCTTCTACTAGAAGAGCAGCCCAAAACTTGATTGCCAAGAAAAAGAATGAATCAGTTGATTGGGTAAGGGAAATCATCGGGATGGAAAAGCTGACTGATTACACTTGTAATCCTGACTATTTAACTACTTATAGTAAGTTCATGGCTCAACAACACACGTTCATGGAGATCATGAATGATCATGGGAAGTACTCCATGATAAACCTTGAAGGAGTAGGAGTAATCGACGTTGGTCATTTGAGGAAGCATCTAGATGTGGTGCAACAGGCTTTCGATTTGAAGGATGAGAATGATGGCCTACTGGAACAATTGTGCTAATGAGGCCTGGTGGATTCTATGGCCTTGCACATAAATGTTCAGCATTCGAAACATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238625" ref_strand="+" ref_description="SGN-E238625 [cLED-17-P8]">
      <seq>tcctgactatttaactacttatagtaagttcatggctcaacaaaacacgttcatggagattatgaatgatcatgggaagtactccatgataaaccttgaaggggtaggagtaatcgacgttggtcatttgaggaagcatctagatgtggtgcaacaggctttcgatttgaagatgagaatgatggcctactggaaaattgtgctaatgaggctggtggattctatggccttacacataatgttcagcatacgaaacatgattaacaaggagatggaaaacgagatcatacaggatctgatggcaccacatggtggtggaattgaaagaatgcttgacgagtcacctttggttgctgagaaacgcaataagctcaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="+" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="6109" stop="7088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6409" g_stop="6788" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="+" ref_id="SGN-E238625" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6409" e_stop="6788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGACTATTTAACTACTTATAGTAAGTTCATGGCTCAACAAAACACGTTCATGGAGATTATGAATGATCATGGGAAGTACTCCATGATAAACCTTGAAGGGGTAGGAGTAATCGACGTTGGTCATTTGAGGAAGCATCTAGATGTGGTGCAACAGGCTTTCGATTTGAAGATGAGAATGATGGCCTACTGGAAAATTGTGCTAATGAGGCTGGTGGATTCTATGGCCTTACACATAATGTTCAGCATACGAAACATGATTAACAAGGAGATGGAAAACGAGATCATACAGGATCTGATGGCACCACATGGTGGTGGAATTGAAAGAATGCTTGACGAGTCACCTTTGGTTGCTGAGAAACGCAATAGGCTCAAAAAGA</genome_strand>
        <mrna_strand>TCCTGACTATTTAACTACTTATAGTAAGTTCATGGCTCAACAAAACACGTTCATGGAGATTATGAATGATCATGGGAAGTACTCCATGATAAACCTTGAAGGGGTAGGAGTAATCGACGTTGGTCATTTGAGGAAGCATCTAGATGTGGTGCAACAGGCTTTCGATTTGAAGATGAGAATGATGGCCTACTGGAAAATTGTGCTAATGAGGCTGGTGGATTCTATGGCCTTACACATAATGTTCAGCATACGAAACATGATTAACAAGGAGATGGAAAACGAGATCATACAGGATCTGATGGCACCACATGGTGGTGGAATTGAAAGAATGCTTGACGAGTCACCTTTGGTTGCTGAGAAACGCAATAAGCTCAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604011" ref_strand="-" ref_description="SGN-E604011 [67201]">
      <seq>taataatgagatggaaaacgagatcattcaggatctgatggcaccacatggtggtggaattgaaagaatgcttgatgagtcgcctttggttgctgaaaaacgcaataggctcaaaaagagtatcaagctactcaaggagtccaaagaggtggtggccaatatcatggacaggatttcactttatgatgatcatgaaagtgactgaggttaataagtgatactaatgagcagggcactctatttccattcagccaatgttcctaatatgttatttatctcctaatatcaaactaccaagtagactagaactatgttttggttttacaatatgcctttgcccctgcttgtatgtaattctcgtatttctagctattagctaaatgaaaatcaagtttatttgtacgaaaaaaaaaaaaaaaaaactcgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="+" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="6370" stop="7367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6670" g_stop="7067" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="407" polyA_stop="423"/>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="+" ref_id="SGN-E604011" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604011" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6670" e_stop="7067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAAGGAGATGGAAAACGAGATCATACAGGATCTGATGGCACCACATGGTGGTGGAATTGAAAGAATGCTTGACGAGTCACCTTTGGTTGCTGAGAAACGCAATAGGCTCAAAAAGAGTGTCAAGCTTCTCAAGGAGTCCAAAGAGGTGGTGGCCAATATCATGGACAGGATTTCACTTCACGATGATAATGAAAGGGACTAAGGTTAATATGTGATACTAATGAGCAGGGCACTCTATTTCCATTCAGCCAATGTTCCTAATATCCTGTTTATCTCCTAATATCAAACTACC-A--AG--T---ACTATGTTTTGGTTTTACAATATATCTTTGCCCCTGCTTGTATGTAATTTTCGTATTTCTTGCTATTAGCTAAATGCAAATCAAGTTTATTTGTACGAA</genome_strand>
        <mrna_strand>TAATAATGAGATGGAAAACGAGATCATTCAGGATCTGATGGCACCACATGGTGGTGGAATTGAAAGAATGCTTGATGAGTCGCCTTTGGTTGCTGAAAAACGCAATAGGCTCAAAAAGAGTATCAAGCTACTCAAGGAGTCCAAAGAGGTGGTGGCCAATATCATGGACAGGATTTCACTTTATGATGATCATGAAAGTGACTGAGGTTAATAAGTGATACTAATGAGCAGGGCACTCTATTTCCATTCAGCCAATGTTCCTAATATGTTATTTATCTCCTAATATCAAACTACCAAGTAGACTAGAACTATGTTTTGGTTTTACAATATGCCTTTGCCCCTGCTTGTATGTAATTCTCGTATTTCTAGCTATTAGCTAAATGAAAATCAAGTTTATTTGTACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723270" ref_strand="+" ref_description="SGN-E723270 [FC20AA03]">
      <seq>cccatggggatccgacccattactcaaaaatggcagcaactttagcaattgcattgaagagtctcttctctgtgttgggatgtttgattacagccaccgtaatatacaccgtcgccactgatggccttcctttccgcatagaactccttaccccgtggatggcagctaccctgatagatttctacatccacatatttgttatatggtcttgggttgtctacaaggaatcaaactggattactgcaatactttgggtggtcttgctagtatgtttgggaagcattgctacatgtggctacatcgtgttgcaatttcttaagctttcaactcaggaatctttacaggatccaatttactttgtcctattacgacgtcaggaaaagactgaaacagaacaacagaagaaatgttctcttttaactgcaagaattctatttcctgctttgggctgtctgatgctagggacattgatttacaccattgtaactgatggttctccatttcgcagagatgtttttactccgtgggtgatagcaacagtgattgatttctatgttggtgttgtggctctctcggtttgggttgcttataaggaatcaagttggctgagtgcagctttatggataatacttataatttgttctggcagcatcagcacatgtgcctatatagctcttcagcttttcaatctttcatctcaagatcccgtctaccttgttcttttcagcagccgcaacagaaaaagggtatgaagtaacgtctcgaacagagagcatcggagagggtcaattgaggaagaagctttgtggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="17362" stop="9512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17061" g_stop="16922" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="154" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16921" i_stop="15586" i_length="1336">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15585" g_stop="15534" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="206" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15533" i_stop="15172" i_length="362">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.318" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15171" g_stop="15098" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="280" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15097" i_stop="14137" i_length="961">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14136" g_stop="14035" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="382" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14034" i_stop="12698" i_length="1337">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12697" g_stop="12557" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="523" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12556" i_stop="11506" i_length="1051">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11505" g_stop="11454" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="575" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11453" i_stop="11247" i_length="207">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11246" g_stop="11173" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="649" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="11172" i_stop="10292" i_length="881">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="10291" g_stop="10202" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="739" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="10201" i_stop="9884" i_length="318">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9883" g_stop="9812" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="811" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E723270" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17061" e_stop="16922"/>
          <exon e_start="15585" e_stop="15534"/>
          <exon e_start="15171" e_stop="15098"/>
          <exon e_start="14136" e_stop="14035"/>
          <exon e_start="12697" e_stop="12557"/>
          <exon e_start="11505" e_stop="11454"/>
          <exon e_start="11246" e_stop="11173"/>
          <exon e_start="10291" e_stop="10202"/>
          <exon e_start="9883" e_stop="9812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGAATACTCAAAAATGGCAGCAACTTTAGCAATTGCATTGAAGAGTCTCTTCTCTGTGTTGGGATGTTTGATTACAGCCACCGTAATATACACCGTCGCCACTGATGGCCTTCCTTTCCGCATAGAACTCCTTACCCCGTATTATCCTTTTCTCTCTCTCTCTCTGTCATACTAATCCTACCTTGAATTTCATTTTTTTTTGGATTATTAATGCTCCTGTTTGGATGAATTGGGGTTTGAATCTTTATCAGTACCAAAATTTGTTGAATTATGGATATAGAAAGTCAAAAGCCCTATCTAAATGCTTAAATTATTCAAAAAAGGATCACTTTTAGTTACATTTTTATATTTTGAACGCCTAAACCTGGATTTCTTTCTCCTCACCTTTACTAAGACTGTTTGGATGATTTTAAGCATTGTTTCGTGTTATACTGTATCTTTTTAATGAATATAATGTTTGGATAGATTGTATTGTTCTAATGTCACACTTCAGGAATTTGAGTTATAAACTTACAAGAAAAGTGTGCTAATATGAAAAATGTAGAATAAGATTATTAAATAACATATAAAGACAAAAAGAGAAGAAAATATTAAAGGGATGACACGATCACACCAAATTAGTGGTTACATAAAATGAGATTTTTAATTGTTACAATATCATACAATAGAATTTAAGTAACGATCAAAATGAACATTGTATTTAAATTAACAATATAATACGATGGGTAACAACCATCCAAACAAGGTGTAAAAGTTCAAGCTGCTAGAAATAAGACACTCTCTGGATTTCAATTTATTTGTCATACTTTCTCTTTTCGTTCGTTTATACAGGAATGCTCCTTTTCCTTTTTAGCAATTCTTTAATTCTAACTTTGCACGAGACTTCTTTAAGACCGCAAGATTAAAATGTATTTTGATTTATTTGACAAATCTTTAGTTCAGAAGTTCCTTTTCCTTCCTTCAACTTGGTACCAAGTTAAAACAGGACAAGCAAATTGAAACCGAGGGAGTGACTTTTTTTAATTAATTATGTGTTTAGTTATCTTATAGTAGTCCCTCATTCTCATTTTATTGTGAAGTTGTTACTGTTTGGAGAGTCCAACACTTTTTTTATTTCAACTTTCTCAAACTTCGTTTGAATATTTTGAATCATTAGCTATGTTGATTTGCACTGCTTTTCATGTAGTTTACGAATAGAACAGTTCTATTTTTAAAAAAATGAAGAATCTATACCCAAATTCATACTCAAAATAAGATTTCTGACCCTTGTACTCCGACAGAGGAGTAATATTTCTTTTGAAAACGGTTAAGAAAAAGGAACTAACTTGAAATTGAGATTTTGATTTGAAAAACAGTTTAGTCCCATCTGTATTCTTGATGTTGTTATTAATACCACTTACCTTGTCAAAAAAATAAATAGTTCAGTTCCATCTGCTTTCCAGACAATCTGAAATGAGTGGGATGAATCTTGCAGGTGGATGGCAGCTACCCTGATAGATTTCTACATCCACATATTTGTTATATGGGTATGCCATGATTAATTTAATGCTTCAAAATGTTTCATATGTGAACCTTTATTCTAAAGTCAATTGCATTTTATTTTTCTACAGTTTCACTAGCATTAAATAATGAGGAGAACATGTTTAATTTGGCGCACCTACTATGTTAGATGTCAGAGATATAAATGGTATAGGAGTTAGAGCTATAAATGTTATAAAGGTTAAGATTCTCAGACATTTGTGCAAGGGTTTTAACTGCATTGTAAACAATATTTTTATTCCAAGACATTGGCCAGAATGCATCACATGTTACTATGTTTCTCTGCTCTTAACATCTAAGAGCAGAACCGCAAAAGCAATGCTCTCATGTTTTGGTGTGGTGTTTTCAGTCTTGGGTTGTCTACAAGGAATCAAACTGGATTACTGCAATACTTTGGGTGGTCTTGCTAGTATGTTTGGGAAGGTATGCCACCCCTATTCCTGTATATAGAACAACTTTGATGTACTTTTAGTTTCAGATGATGACTGTTCTTTAAGCTTTCTCTTAGCATCTCTTATATGACTAAATTCTCAGGTTGAATAGGTCTCTATCTGTTGACATACACTGTTTTTTGTCTTCACCCATGGGCATTACAGTCTTAGGATTGATGTTCCCAATTATTTATATCTTGTGTTCGCTGCTATGAATTCCCTTCGTATATAGATAACTTCCTTGATGATATACCCAGTCAATCAATCAACTATACATCAAGCAGAACTAGGTCCGCGATTTGAATTCTCTACATATTTCTTGCTATTTGGGCCCACATCATTCCAATACTATCTAGAAGTTTGTCTTGTAAGGCAAAGTTCAAGAAAATCTCTAAATGTCACACTTATGAATCTAATATTTGTGCAAAAGCATAAATTAAGCGTCAATGCACACTAGTTGGTCTTATTGATTTGGATCTTTTCTTCCATGTTACTTTTTCAGATTTGCAATGATTCCTAGATTTTTTAGGTCTTTTCAGACAACCTCCTCCATGTGATTTAGGCCTTTCTCATCCCCTTCAGCACCTTCAATCACCATGTTACGCCAGTTAACTGGTGTATATTTGATGTATTTTAGGTCTATCAAAGATGACTTTCTCTTACTATATCCTCTATGTGTGCAACTGCACCCTTTGTTTCAACATATATTCAATTTTGTATGACTGCACATTTACCTTGATGTCTTTTGGCAACTTGTATTGCATAGGATACAAATTTTCTTGCATTCCAGTGTTGATGACTGTCTTCCTTTTCAGTTTGTATTATCCTTGCATGTCATCAGAAGGCCATGTTGTCATTGCCCCTACAAAGTTCAATCAATATCATGCATAAATTGCCAGTTTGTGATTATATATTCAGGGATGGTGATAACATTCTCTCTACTCCCTTTACAGCATTGCTACATGTGGCTACATCGTGTTGCAATTTCTTAAGCTTTCAACTCAGGAATCTTTACAGGATCCAATTTACTTTGTCCTATTACGACGTCAGGAAAAGTGAGTAGATATTTGCACAAAGTTCTTTTTTCCTTCATAGTTTCTGTTTTTATTTCTCTTTGGAGACCAGAAAAAGAAAAAGAGAGTTCAATTGGAAATGATATTTAGTTCATATATTTTCATGTATGCATGTCCAACTGTTTGAGGATACTCGTGAAACTGAAATATCATGCACAAGTTTGGTGTTTGGTTGGAGAATATATTTGCAAATGTAATATATAACTGTTGTTAACAAGAGCTACTCTTGTTGTTTTTGCTTCAGTTGCGTATCATGCCTGTTGTTTTGTTCAGAGTAGACATGTAGTGAAAATATCTAGAAAAATGTGGTTCTCAGAATAAAAGAAATGAAATTACATCTCTTCACAGGTCAAGACAATGGTGGAAACATAGCTTGTACTGGGTCTGGCATATTTATGTTCATTGTTCATTGTTTTACTCTTTATTGATCATATACTTATAGAGGTAAAGTCAAAGAATGTAAATATCACACTTGGGTTTATCAAACTTTGGCATTTGTCTTGGACAAGAATAGTGTTCAAATGCCTCATCCCCATCTTGGAAAAATGAAGTTTTCAATCATAGGGAGAAAACAGATTAGTCAACGAAATGTTGCATCCTCCATTTGTGCAGGAGGAATTGCCAGTTGAATACTTTAAATATGTGCCTGGTTTATTTGTTAGATACATCTTCCATTTTGTTAGTAGAGTTAGATAAAAGGTAACTGTGACTTTAATGTTATTTGAGTCGTTTAATTATTCACATATTGGGAAAAGAAACTAAAATCAAGTATTCTCAACAATAAAAAATACAAGTATCTTATCAGCAATATACTAAAGAGATGAAAAATTTGTGATTCGTTTTGTTATTTAGTGACGAGTGTTGTCTTTCTCAGTACTTAGTATGTCATATGTAGTTTCCGAAATCAAAGTACTATTATGTATACCACTTCTTAAGAATATTGGCTTCTTTTATATATCAGTCATCCAAGATCTTTTAGTGGAATTACAATGGTGCTTCTAACTGCAAGTTGGATCATTCATTTCATACTGTGTTTTCTAGTTACCCTTGTTGTGGTTGTTTCTTTTGTACAAGCCCTGCTGTGTACTACGTTATCAGGTCATATAGTCATGACATGTATTGATAACCTACTCTTTGCCGAAAATAATTATACAAAGCTGTAACTGATAGAGTGTTCCTTTAAAAAATATAATATGCAAGTGTTCATGGAGTTTGAAGCTTTCCTCATCAATGTTGTATTAGTGGCACCTATATTTTGTTAGTTTTCTTTGTGAAAATGACCTTAACTTATAATGATCTGATGAGATGTTGTGATTTAGGACTGAAACAGAACAACAGAAGAAATGTTCTCTTTTAACTGCAAGAATTCTATTTCCTGCTTTGGGCTGTCTGATGCTAGGGACATTGATTTACACCATTGTAACTGATGGTTCTCCATTTCGCAGAGATGTTTTTACTCCGTAAGTTATTTGTTTGTTTATTTATTCCTATTTAAAACAGATACCATCAACCTTGTTTTTTTCTGGTTAAATGGAGACTTTGCTACCGATTTTGAGGATAGCAGCATTGGCGGAGAACTTTGTCGGTGCTTGAAAGTTTTGTTTGTTTTCTTGTTTGAACTATAATTAGATCTCCGCTCTGCTGCTTTCTAAATTGATGCACTTTATGGGGAAGTAGCATAAACCTCTCGTAACTGGAAGTTTTTGTGCTATTGTGGAGGAAAACTCCCTTTTCATTTATTCAATGTCATATCAGCATTTTATTTATTTAAGGAAGTATATATGTCTTCCTGGAATGAGTTCCTAAATGAGAGAATATCTGCACTACAGTGATTCGAAGGTTGGGATGAGGTTACTGAAAATGACTTGTGCTCTCAGAATGTATAAAATTTCTATTAATAATATTGCCTCTCTCATTTTTCATGAACAAGGACTATTGATGATTTCTTACCTCATGTTAATCGTTTAATCCTTATTTGTTTCTTACCGTGTTAACTTTAAATATTATAACATATGATTAGACTGATCTATGGTGAGCTTTATAACTTTTCCCTATGTAACATGATACTACCTTCAGTGTGACATATGTCGGATAATATGGTATCTATGGTATTTCGAACTCTATTTCTCTGATGCTAAATTTCAATCGGAATTTTTGTATTAATTATCCTCTTCTTTGGTTTGCAAAGTCTAACTAAAATAAGCTCTTTCTTCCTCTAAATGGATTCACTATGTACAGGTCATTCTTAGGGCCTAGATTCATGAAACTTATCAGCATTTCCTCTCTCTACTCTGGTTGATGTCGTGCAACCCTAGAAAATTGTCTTCTTCTTTGTCCAAGGGGCTGCGGTCTATCATTTGCAAATTTGTTTAGAAGTTGTTCTGGAAAACAAACTTCATGAGTTTGTGCAGAAGTAATACATATGCATCCTCTTACATCAGCCGATTATAATTTTCTGCTTGGTATAAGTCTTACTTTGACATGCAATTTAAGAAGTCAATTTATGTGCAGGTGGGTGATAGCAACAGTGATTGATTTCTATGTTGGTGTTGTGGCTCTCTCGGTAAGCTTTTCACTGTTCATCTGCCTTTTTTTAAAATAATTTTTTTTTGGGAAATTCCCCTCTATTTATCTACCTTTGCTTTAGGAAGTCCAAAGTTTGTAAAATTCGATATATGGCTAGAGCCAGTTGCTGCATTAGGTGTCAAAATCATCAGTTAGGACTTTTCATGTGATTATTTATCTTAGATGAGTTGCACTGTTTTTTCAGGTTTGGGTTGCTTATAAGGAATCAAGTTGGCTGAGTGCAGCTTTATGGATAATACTTATAATTTGTTCTGGCAGGTACATGTTTTTTTTGGATAATGCATAAATTGTACTCCTCCATTCCATTTTATACGATGTAGTTTGACTGGACATGGAGTTTTAGAAATATGGAAATATTTTGCAATCTTTCAAAACTACTCTCTAAAAGAAATAATTTTTTAAATAGAAGTCGTGTACACCTATTGGAATTTTTGTCAAATAAACAGGATCCAACATGGGTAAAATGTAGATAGTGTCATTAAATATTTGCCAATTAAGGAAATATGTCAATTCTTTTTGGGCAAACTAGAAAGAAAAATGTGTCATATACATTGGAGCAGAGGGAGTATCAGTTTGAAGTTAGCTTCATCAGTACATCGTCTTATTTGTTGCTCTATGTAGGTGAAAGCAAAATATGAACTCTCATTCATATGTAATGGAATGAGGAGGAGTTCATATATATATGTGTTTGCATGCCTTAATGTGATTCTGAATGAGAAGAGGTTCTGTGAATTTGTCGAAATAACTTAAAAGATCTTGCTTGTTTGGCAAGAAGTCAATTAATATTTCAGCCTTTGCCTATGGCAACAACTTCATTAATAACTAATCTGCATTATTACCTTCTTCCATGCATTAAGCTTTAAGTTTTTAGAGTTCTCCTAAACATGAGTTAATATTCCATCATGAATAACCATAGTTCAATCTAGTTAGTATTTCCTAGACTTTATATTCCTTCAACTATATGTCTGTAAAGGACGACTTCATTATTTTCTATTGTGTTTCTTTTTCTCATGCCGGCAATTTTCTGGTCCCTCAAAAACTGATGGCACTTTTTCCGGCTATATTTATATGATATGTTACAACAATTTGTTTTTGGACCATAATTATATCTAATTCGTGCTTTGTGTTGATTTCCTCAGCATCAGCACATGTGCCTATATAGCTCTTCAGCTTTTCAATCTTTCATCTCAAGATCCCGTCTACCTTGTTCTTTTCAGCAGCCGCAACAGGCAAGTTTGTGCCCCATCTGTTTAAGTGTGTTCTCCTCGTTATGACATAGATTTTGTTTGTTTGTCCTTGTGAACAATCAAATGAAGAAGATATTACTTCCTGTTAGCTCTGCAGCGACAGCAACAATTTGTAGTACGACAAATATACATCCTTGTTCTAGTTTAAAGTTGAACAAGATTTGGAATTTCCTTTCATTTGTGCGAGTGATTGTATCCGTCTTTTGTTCATGGAATTTTACTAATTTCAAGTTTTCATTGCTTCTTAACAATTCTGTACACATTACAATGTTTAATTTTTGTGACTTTTTATTAGGGCAGAAAAAGGGTATGAAGTAACGTCTCGAACAGAGAGCATCGGAGAGGGTCAATTGAGGAAGAAGCTTTGTGGTT</genome_strand>
        <mrna_strand>ACCCATTACTCAAAAATGGCAGCAACTTTAGCAATTGCATTGAAGAGTCTCTTCTCTGTGTTGGGATGTTTGATTACAGCCACCGTAATATACACCGTCGCCACTGATGGCCTTCCTTTCCGCATAGAACTCCTTACCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCAGCTACCCTGATAGATTTCTACATCCACATATTTGTTATATGG..........................................................................................................................................................................................................................................................................................................................................................................TCTTGGGTTGTCTACAAGGAATCAAACTGGATTACTGCAATACTTTGGGTGGTCTTGCTAGTATGTTTGGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCTACATGTGGCTACATCGTGTTGCAATTTCTTAAGCTTTCAACTCAGGAATCTTTACAGGATCCAATTTACTTTGTCCTATTACGACGTCAGGAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGAAACAGAACAACAGAAGAAATGTTCTCTTTTAACTGCAAGAATTCTATTTCCTGCTTTGGGCTGTCTGATGCTAGGGACATTGATTTACACCATTGTAACTGATGGTTCTCCATTTCGCAGAGATGTTTTTACTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGATAGCAACAGTGATTGATTTCTATGTTGGTGTTGTGGCTCTCTCG...............................................................................................................................................................................................................GTTTGGGTTGCTTATAAGGAATCAAGTTGGCTGAGTGCAGCTTTATGGATAATACTTATAATTTGTTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCACATGTGCCTATATAGCTCTTCAGCTTTTCAATCTTTCATCTCAAGATCCCGTCTACCTTGTTCTTTTCAGCAGCCGCAACAG..............................................................................................................................................................................................................................................................................................................................AAAAAGGGTATGAAGTAACGTCTCGAACAGAGAGCATCGGAGAGGGTCAATTGAGGAAGAAGCTTTGTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405030" ref_strand="+" ref_description="SGN-E405030 [PPC-16-A14]">
      <seq>tgttagttttctttgtgaaaatgaccttaacttataatgatctgatgagatgttgtgatttaggactgaaacagaacaacagaggaaatgttctcttttaactgcaagaattctatttcctgccttgggctgtctgatgctagggacattgatttacaccattgtaactgatggttctccatttcgcagagatgtttttactccgtggctgacagcaacagtaattgatttctatgtcggtgttgtggctctctcggtttgggttgcatataaagaatcaagttggctgagtgcagctttatggataatacttataatttgttctggcagcatcagcacatgtgcctatatagctcttcagcttttcaatctctcatctcaagatcccgtctaccttgttcttttcagcagcaacaacaataatttgtagtacagcaaaaaatcatccttgttctagtcaaagttgaaccatatttgagaatttcctttcattcgtgcaagtgattgaatcctttttcttttgtcgacagaattttactatatatctgttcattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="13060" stop="9903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12760" g_stop="12557" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12556" i_stop="11506" i_length="1051">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11505" g_stop="11454" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="256" r_length="52" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11453" i_stop="11247" i_length="207">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11246" g_stop="11173" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="330" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11172" i_stop="10292" i_length="881">
            <donor d_prob="0.724" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10291" g_stop="10202" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="420" r_length="90" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10201" i_stop="10078" i_length="124">
            <donor d_prob="0.626" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10077" g_stop="9992" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="506" r_length="86" r_score="0.837"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E405030" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12760" e_stop="12557"/>
          <exon e_start="11505" e_stop="11454"/>
          <exon e_start="11246" e_stop="11173"/>
          <exon e_start="10291" e_stop="10202"/>
          <exon e_start="10077" e_stop="9992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAGTTTTCTTTGTGAAAATGACCTTAACTTATAATGATCTGATGAGATGTTGTGATTTAGGACTGAAACAGAACAACAGAAGAAATGTTCTCTTTTAACTGCAAGAATTCTATTTCCTGCTTTGGGCTGTCTGATGCTAGGGACATTGATTTACACCATTGTAACTGATGGTTCTCCATTTCGCAGAGATGTTTTTACTCCGTAAGTTATTTGTTTGTTTATTTATTCCTATTTAAAACAGATACCATCAACCTTGTTTTTTTCTGGTTAAATGGAGACTTTGCTACCGATTTTGAGGATAGCAGCATTGGCGGAGAACTTTGTCGGTGCTTGAAAGTTTTGTTTGTTTTCTTGTTTGAACTATAATTAGATCTCCGCTCTGCTGCTTTCTAAATTGATGCACTTTATGGGGAAGTAGCATAAACCTCTCGTAACTGGAAGTTTTTGTGCTATTGTGGAGGAAAACTCCCTTTTCATTTATTCAATGTCATATCAGCATTTTATTTATTTAAGGAAGTATATATGTCTTCCTGGAATGAGTTCCTAAATGAGAGAATATCTGCACTACAGTGATTCGAAGGTTGGGATGAGGTTACTGAAAATGACTTGTGCTCTCAGAATGTATAAAATTTCTATTAATAATATTGCCTCTCTCATTTTTCATGAACAAGGACTATTGATGATTTCTTACCTCATGTTAATCGTTTAATCCTTATTTGTTTCTTACCGTGTTAACTTTAAATATTATAACATATGATTAGACTGATCTATGGTGAGCTTTATAACTTTTCCCTATGTAACATGATACTACCTTCAGTGTGACATATGTCGGATAATATGGTATCTATGGTATTTCGAACTCTATTTCTCTGATGCTAAATTTCAATCGGAATTTTTGTATTAATTATCCTCTTCTTTGGTTTGCAAAGTCTAACTAAAATAAGCTCTTTCTTCCTCTAAATGGATTCACTATGTACAGGTCATTCTTAGGGCCTAGATTCATGAAACTTATCAGCATTTCCTCTCTCTACTCTGGTTGATGTCGTGCAACCCTAGAAAATTGTCTTCTTCTTTGTCCAAGGGGCTGCGGTCTATCATTTGCAAATTTGTTTAGAAGTTGTTCTGGAAAACAAACTTCATGAGTTTGTGCAGAAGTAATACATATGCATCCTCTTACATCAGCCGATTATAATTTTCTGCTTGGTATAAGTCTTACTTTGACATGCAATTTAAGAAGTCAATTTATGTGCAGGTGGGTGATAGCAACAGTGATTGATTTCTATGTTGGTGTTGTGGCTCTCTCGGTAAGCTTTTCACTGTTCATCTGCCTTTTTTTAAAATAATTTTTTTTTGGGAAATTCCCCTCTATTTATCTACCTTTGCTTTAGGAAGTCCAAAGTTTGTAAAATTCGATATATGGCTAGAGCCAGTTGCTGCATTAGGTGTCAAAATCATCAGTTAGGACTTTTCATGTGATTATTTATCTTAGATGAGTTGCACTGTTTTTTCAGGTTTGGGTTGCTTATAAGGAATCAAGTTGGCTGAGTGCAGCTTTATGGATAATACTTATAATTTGTTCTGGCAGGTACATGTTTTTTTTGGATAATGCATAAATTGTACTCCTCCATTCCATTTTATACGATGTAGTTTGACTGGACATGGAGTTTTAGAAATATGGAAATATTTTGCAATCTTTCAAAACTACTCTCTAAAAGAAATAATTTTTTAAATAGAAGTCGTGTACACCTATTGGAATTTTTGTCAAATAAACAGGATCCAACATGGGTAAAATGTAGATAGTGTCATTAAATATTTGCCAATTAAGGAAATATGTCAATTCTTTTTGGGCAAACTAGAAAGAAAAATGTGTCATATACATTGGAGCAGAGGGAGTATCAGTTTGAAGTTAGCTTCATCAGTACATCGTCTTATTTGTTGCTCTATGTAGGTGAAAGCAAAATATGAACTCTCATTCATATGTAATGGAATGAGGAGGAGTTCATATATATATGTGTTTGCATGCCTTAATGTGATTCTGAATGAGAAGAGGTTCTGTGAATTTGTCGAAATAACTTAAAAGATCTTGCTTGTTTGGCAAGAAGTCAATTAATATTTCAGCCTTTGCCTATGGCAACAACTTCATTAATAACTAATCTGCATTATTACCTTCTTCCATGCATTAAGCTTTAAGTTTTTAGAGTTCTCCTAAACATGAGTTAATATTCCATCATGAATAACCATAGTTCAATCTAGTTAGTATTTCCTAGACTTTATATTCCTTCAACTATATGTCTGTAAAGGACGACTTCATTATTTTCTATTGTGTTTCTTTTTCTCATGCCGGCAATTTTCTGGTCCCTCAAAAACTGATGGCACTTTTTCCGGCTATATTTATATGATATGTTACAACAATTTGTTTTTGGACCATAATTATATCTAATTCGTGCTTTGTGTTGATTTCCTCAGCATCAGCACATGTGCCTATATAGCTCTTCAGCTTTTCAATCTTTCATCTCAAGATCCCGTCTACCTTGTTCTTTTCAGCAGCCGCAACAGGCAAGTTTGTGCCCCATCTGTTTAAGTGTGTTCTCCTCGTTATGACATAGATTTTGTTTGTTTGTCCTTGTGAACAATCAAATGAAGAAGATATTACTTCCTGTTAGCTCTGCAGCGACAGCAACAATTTGTAGTACGACAAATATACATCCTTGTTCTAGTTTAAAGTTGAACAAGATTTG-GAATTTCCTTTCATTTGTGCGAGTGATT</genome_strand>
        <mrna_strand>TGTTAGTTTTCTTTGTGAAAATGACCTTAACTTATAATGATCTGATGAGATGTTGTGATTTAGGACTGAAACAGAACAACAGAGGAAATGTTCTCTTTTAACTGCAAGAATTCTATTTCCTGCCTTGGGCTGTCTGATGCTAGGGACATTGATTTACACCATTGTAACTGATGGTTCTCCATTTCGCAGAGATGTTTTTACTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGACAGCAACAGTAATTGATTTCTATGTCGGTGTTGTGGCTCTCTCG...............................................................................................................................................................................................................GTTTGGGTTGCATATAAAGAATCAAGTTGGCTGAGTGCAGCTTTATGGATAATACTTATAATTTGTTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCACATGTGCCTATATAGCTCTTCAGCTTTTCAATCTCTCATCTCAAGATCCCGTCTACCTTGTTCTTTTCAGCAGCAACAACAA............................................................................................................................TAATTTGTAGTACAGCAAAAAATCATCCTTGTTCTAG-TCAAAGTTGAACCATATTTGAGAATTTCCTTTCATTCGTGCAAGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352103" ref_strand="+" ref_description="SGN-E352103 [cTOS-13-J8]">
      <seq>ctacatccacatatttgttatatggtcttgggttgtctacaaggaatcaaactggattactgcaatactttgggtggtcttgctagtatgtttgggaagcattgctacatgtggctacatcgtgttgcaatttcttaagctttcaactcaggaatctttacaggatccaatttactttgtcctattacgacgtcaggaaaagactgaaacagaacaacagaagaaatgttctcttttaactgcaagaattctatttcctgctttgggctgtctgatgctagggacattgatttacaccattgtaactgatggttctccatttcgcagagatgtttttactccgtgggtgatagcaacagtgattgatttctatgttggggttgtggctctctcggtttgggttgcttataaaggatcaagttggctgagtgcagctttatggataatacttataatttgntctggcagcatcagcacatgtggcctatatagctcttcagcttttcaatctttcatctcaagatcccgtctaccttgttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="15858" stop="9917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15558" g_stop="15534" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15533" i_stop="15172" i_length="362">
            <donor d_prob="0.904" d_score="0.00"/>
            <acceptor a_prob="0.318" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15171" g_stop="15098" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="99" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15097" i_stop="14137" i_length="961">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14136" g_stop="14035" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="201" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14034" i_stop="12698" i_length="1337">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12697" g_stop="12557" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="342" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12556" i_stop="11506" i_length="1051">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11505" g_stop="11454" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="394" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11453" i_stop="11247" i_length="207">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11246" g_stop="11173" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="468" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11172" i_stop="10292" i_length="881">
            <donor d_prob="0.724" d_score="0.98"/>
            <acceptor a_prob="0.873" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10291" g_stop="10217" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="544" r_length="76" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E352103" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15558" e_stop="15534"/>
          <exon e_start="15171" e_stop="15098"/>
          <exon e_start="14136" e_stop="14035"/>
          <exon e_start="12697" e_stop="12557"/>
          <exon e_start="11505" e_stop="11454"/>
          <exon e_start="11246" e_stop="11173"/>
          <exon e_start="10291" e_stop="10217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCCACATATTTGTTATATGGGTATGCCATGATTAATTTAATGCTTCAAAATGTTTCATATGTGAACCTTTATTCTAAAGTCAATTGCATTTTATTTTTCTACAGTTTCACTAGCATTAAATAATGAGGAGAACATGTTTAATTTGGCGCACCTACTATGTTAGATGTCAGAGATATAAATGGTATAGGAGTTAGAGCTATAAATGTTATAAAGGTTAAGATTCTCAGACATTTGTGCAAGGGTTTTAACTGCATTGTAAACAATATTTTTATTCCAAGACATTGGCCAGAATGCATCACATGTTACTATGTTTCTCTGCTCTTAACATCTAAGAGCAGAACCGCAAAAGCAATGCTCTCATGTTTTGGTGTGGTGTTTTCAGTCTTGGGTTGTCTACAAGGAATCAAACTGGATTACTGCAATACTTTGGGTGGTCTTGCTAGTATGTTTGGGAAGGTATGCCACCCCTATTCCTGTATATAGAACAACTTTGATGTACTTTTAGTTTCAGATGATGACTGTTCTTTAAGCTTTCTCTTAGCATCTCTTATATGACTAAATTCTCAGGTTGAATAGGTCTCTATCTGTTGACATACACTGTTTTTTGTCTTCACCCATGGGCATTACAGTCTTAGGATTGATGTTCCCAATTATTTATATCTTGTGTTCGCTGCTATGAATTCCCTTCGTATATAGATAACTTCCTTGATGATATACCCAGTCAATCAATCAACTATACATCAAGCAGAACTAGGTCCGCGATTTGAATTCTCTACATATTTCTTGCTATTTGGGCCCACATCATTCCAATACTATCTAGAAGTTTGTCTTGTAAGGCAAAGTTCAAGAAAATCTCTAAATGTCACACTTATGAATCTAATATTTGTGCAAAAGCATAAATTAAGCGTCAATGCACACTAGTTGGTCTTATTGATTTGGATCTTTTCTTCCATGTTACTTTTTCAGATTTGCAATGATTCCTAGATTTTTTAGGTCTTTTCAGACAACCTCCTCCATGTGATTTAGGCCTTTCTCATCCCCTTCAGCACCTTCAATCACCATGTTACGCCAGTTAACTGGTGTATATTTGATGTATTTTAGGTCTATCAAAGATGACTTTCTCTTACTATATCCTCTATGTGTGCAACTGCACCCTTTGTTTCAACATATATTCAATTTTGTATGACTGCACATTTACCTTGATGTCTTTTGGCAACTTGTATTGCATAGGATACAAATTTTCTTGCATTCCAGTGTTGATGACTGTCTTCCTTTTCAGTTTGTATTATCCTTGCATGTCATCAGAAGGCCATGTTGTCATTGCCCCTACAAAGTTCAATCAATATCATGCATAAATTGCCAGTTTGTGATTATATATTCAGGGATGGTGATAACATTCTCTCTACTCCCTTTACAGCATTGCTACATGTGGCTACATCGTGTTGCAATTTCTTAAGCTTTCAACTCAGGAATCTTTACAGGATCCAATTTACTTTGTCCTATTACGACGTCAGGAAAAGTGAGTAGATATTTGCACAAAGTTCTTTTTTCCTTCATAGTTTCTGTTTTTATTTCTCTTTGGAGACCAGAAAAAGAAAAAGAGAGTTCAATTGGAAATGATATTTAGTTCATATATTTTCATGTATGCATGTCCAACTGTTTGAGGATACTCGTGAAACTGAAATATCATGCACAAGTTTGGTGTTTGGTTGGAGAATATATTTGCAAATGTAATATATAACTGTTGTTAACAAGAGCTACTCTTGTTGTTTTTGCTTCAGTTGCGTATCATGCCTGTTGTTTTGTTCAGAGTAGACATGTAGTGAAAATATCTAGAAAAATGTGGTTCTCAGAATAAAAGAAATGAAATTACATCTCTTCACAGGTCAAGACAATGGTGGAAACATAGCTTGTACTGGGTCTGGCATATTTATGTTCATTGTTCATTGTTTTACTCTTTATTGATCATATACTTATAGAGGTAAAGTCAAAGAATGTAAATATCACACTTGGGTTTATCAAACTTTGGCATTTGTCTTGGACAAGAATAGTGTTCAAATGCCTCATCCCCATCTTGGAAAAATGAAGTTTTCAATCATAGGGAGAAAACAGATTAGTCAACGAAATGTTGCATCCTCCATTTGTGCAGGAGGAATTGCCAGTTGAATACTTTAAATATGTGCCTGGTTTATTTGTTAGATACATCTTCCATTTTGTTAGTAGAGTTAGATAAAAGGTAACTGTGACTTTAATGTTATTTGAGTCGTTTAATTATTCACATATTGGGAAAAGAAACTAAAATCAAGTATTCTCAACAATAAAAAATACAAGTATCTTATCAGCAATATACTAAAGAGATGAAAAATTTGTGATTCGTTTTGTTATTTAGTGACGAGTGTTGTCTTTCTCAGTACTTAGTATGTCATATGTAGTTTCCGAAATCAAAGTACTATTATGTATACCACTTCTTAAGAATATTGGCTTCTTTTATATATCAGTCATCCAAGATCTTTTAGTGGAATTACAATGGTGCTTCTAACTGCAAGTTGGATCATTCATTTCATACTGTGTTTTCTAGTTACCCTTGTTGTGGTTGTTTCTTTTGTACAAGCCCTGCTGTGTACTACGTTATCAGGTCATATAGTCATGACATGTATTGATAACCTACTCTTTGCCGAAAATAATTATACAAAGCTGTAACTGATAGAGTGTTCCTTTAAAAAATATAATATGCAAGTGTTCATGGAGTTTGAAGCTTTCCTCATCAATGTTGTATTAGTGGCACCTATATTTTGTTAGTTTTCTTTGTGAAAATGACCTTAACTTATAATGATCTGATGAGATGTTGTGATTTAGGACTGAAACAGAACAACAGAAGAAATGTTCTCTTTTAACTGCAAGAATTCTATTTCCTGCTTTGGGCTGTCTGATGCTAGGGACATTGATTTACACCATTGTAACTGATGGTTCTCCATTTCGCAGAGATGTTTTTACTCCGTAAGTTATTTGTTTGTTTATTTATTCCTATTTAAAACAGATACCATCAACCTTGTTTTTTTCTGGTTAAATGGAGACTTTGCTACCGATTTTGAGGATAGCAGCATTGGCGGAGAACTTTGTCGGTGCTTGAAAGTTTTGTTTGTTTTCTTGTTTGAACTATAATTAGATCTCCGCTCTGCTGCTTTCTAAATTGATGCACTTTATGGGGAAGTAGCATAAACCTCTCGTAACTGGAAGTTTTTGTGCTATTGTGGAGGAAAACTCCCTTTTCATTTATTCAATGTCATATCAGCATTTTATTTATTTAAGGAAGTATATATGTCTTCCTGGAATGAGTTCCTAAATGAGAGAATATCTGCACTACAGTGATTCGAAGGTTGGGATGAGGTTACTGAAAATGACTTGTGCTCTCAGAATGTATAAAATTTCTATTAATAATATTGCCTCTCTCATTTTTCATGAACAAGGACTATTGATGATTTCTTACCTCATGTTAATCGTTTAATCCTTATTTGTTTCTTACCGTGTTAACTTTAAATATTATAACATATGATTAGACTGATCTATGGTGAGCTTTATAACTTTTCCCTATGTAACATGATACTACCTTCAGTGTGACATATGTCGGATAATATGGTATCTATGGTATTTCGAACTCTATTTCTCTGATGCTAAATTTCAATCGGAATTTTTGTATTAATTATCCTCTTCTTTGGTTTGCAAAGTCTAACTAAAATAAGCTCTTTCTTCCTCTAAATGGATTCACTATGTACAGGTCATTCTTAGGGCCTAGATTCATGAAACTTATCAGCATTTCCTCTCTCTACTCTGGTTGATGTCGTGCAACCCTAGAAAATTGTCTTCTTCTTTGTCCAAGGGGCTGCGGTCTATCATTTGCAAATTTGTTTAGAAGTTGTTCTGGAAAACAAACTTCATGAGTTTGTGCAGAAGTAATACATATGCATCCTCTTACATCAGCCGATTATAATTTTCTGCTTGGTATAAGTCTTACTTTGACATGCAATTTAAGAAGTCAATTTATGTGCAGGTGGGTGATAGCAACAGTGATTGATTTCTATGTTGGTGTTGTGGCTCTCTCGGTAAGCTTTTCACTGTTCATCTGCCTTTTTTTAAAATAATTTTTTTTTGGGAAATTCCCCTCTATTTATCTACCTTTGCTTTAGGAAGTCCAAAGTTTGTAAAATTCGATATATGGCTAGAGCCAGTTGCTGCATTAGGTGTCAAAATCATCAGTTAGGACTTTTCATGTGATTATTTATCTTAGATGAGTTGCACTGTTTTTTCAGGTTTGGGTTGCTTATAAGGAATCAAGTTGGCTGAGTGCAGCTTTATGGATAATACTTATAATTTGTTCTGGCAGGTACATGTTTTTTTTGGATAATGCATAAATTGTACTCCTCCATTCCATTTTATACGATGTAGTTTGACTGGACATGGAGTTTTAGAAATATGGAAATATTTTGCAATCTTTCAAAACTACTCTCTAAAAGAAATAATTTTTTAAATAGAAGTCGTGTACACCTATTGGAATTTTTGTCAAATAAACAGGATCCAACATGGGTAAAATGTAGATAGTGTCATTAAATATTTGCCAATTAAGGAAATATGTCAATTCTTTTTGGGCAAACTAGAAAGAAAAATGTGTCATATACATTGGAGCAGAGGGAGTATCAGTTTGAAGTTAGCTTCATCAGTACATCGTCTTATTTGTTGCTCTATGTAGGTGAAAGCAAAATATGAACTCTCATTCATATGTAATGGAATGAGGAGGAGTTCATATATATATGTGTTTGCATGCCTTAATGTGATTCTGAATGAGAAGAGGTTCTGTGAATTTGTCGAAATAACTTAAAAGATCTTGCTTGTTTGGCAAGAAGTCAATTAATATTTCAGCCTTTGCCTATGGCAACAACTTCATTAATAACTAATCTGCATTATTACCTTCTTCCATGCATTAAGCTTTAAGTTTTTAGAGTTCTCCTAAACATGAGTTAATATTCCATCATGAATAACCATAGTTCAATCTAGTTAGTATTTCCTAGACTTTATATTCCTTCAACTATATGTCTGTAAAGGACGACTTCATTATTTTCTATTGTGTTTCTTTTTCTCATGCCGGCAATTTTCTGGTCCCTCAAAAACTGATGGCACTTTTTCCGGCTATATTTATATGATATGTTACAACAATTTGTTTTTGGACCATAATTATATCTAATTCGTGCTTTGTGTTGATTTCCTCAGCATCAGCACATGT-GCCTATATAGCTCTTCAGCTTTTCAATCTTTCATCTCAAGATCCCGTCTACCTTGTTCTTTT</genome_strand>
        <mrna_strand>CTACATCCACATATTTGTTATATGG..........................................................................................................................................................................................................................................................................................................................................................................TCTTGGGTTGTCTACAAGGAATCAAACTGGATTACTGCAATACTTTGGGTGGTCTTGCTAGTATGTTTGGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCTACATGTGGCTACATCGTGTTGCAATTTCTTAAGCTTTCAACTCAGGAATCTTTACAGGATCCAATTTACTTTGTCCTATTACGACGTCAGGAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGAAACAGAACAACAGAAGAAATGTTCTCTTTTAACTGCAAGAATTCTATTTCCTGCTTTGGGCTGTCTGATGCTAGGGACATTGATTTACACCATTGTAACTGATGGTTCTCCATTTCGCAGAGATGTTTTTACTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGATAGCAACAGTGATTGATTTCTATGTTGGGGTTGTGGCTCTCTCG...............................................................................................................................................................................................................GTTTGGGTTGCTTATAAAGGATCAAGTTGGCTGAGTGCAGCTTTATGGATAATACTTATAATTTGNTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCACATGTGGCCTATATAGCTCTTCAGCTTTTCAATCTTTCATCTCAAGATCCCGTCTACCTTGTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326943" ref_strand="+" ref_description="SGN-E326943 [cTOC-18-P7]">
      <seq>caactttagcaattgcattgaagagtctcttctctgtgttgggatgtttgattacagccaccgtaatatacaccgtcgccactgatggccttcctttccgcatagaactccttaccccgtggatggcagctaccctgatagatttctacatccacatatttgttatatggtcttgggttgtctacaaggaatcaaactggattactgcaatactttgggtggtcttgctagtatgtttgggaagcattgctacatgtggctacatcgtgttgcaatttcttaagctttcaactcaggaatctttacaggatccaatttactttgtcctattacgacgtcaggaaaagactgaaacagaacaacagaagaaatgttctcttttaactgcaagaattctatttcctgctttgggctgtctgatgctagggacattgatttacaccattgtaactgatggttctccatttcgcagagatgtttttactccgtgggtgatagcaacagtgattgatttctatgttggtgttgtggctctctcggtttgggttgcttataanggatcaagttggctgagtgcagctttatggataatactttatatttgttctggcagcatcagcacatgtgcctatatagctcttcagcttttcaatctttcatctcaagatcccgtctacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="17339" stop="9926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17039" g_stop="16922" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16921" i_stop="15586" i_length="1336">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15585" g_stop="15534" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="170" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15533" i_stop="15172" i_length="362">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.318" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15171" g_stop="15098" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="244" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15097" i_stop="14137" i_length="961">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14136" g_stop="14035" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="346" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14034" i_stop="12698" i_length="1337">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12697" g_stop="12557" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="487" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12556" i_stop="11506" i_length="1051">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11505" g_stop="11454" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="539" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11453" i_stop="11247" i_length="207">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11246" g_stop="11173" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="613" r_length="74" r_score="0.932"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="11172" i_stop="10292" i_length="881">
            <donor d_prob="0.724" d_score="0.94"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="10291" g_stop="10226" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="679" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E326943" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17039" e_stop="16922"/>
          <exon e_start="15585" e_stop="15534"/>
          <exon e_start="15171" e_stop="15098"/>
          <exon e_start="14136" e_stop="14035"/>
          <exon e_start="12697" e_stop="12557"/>
          <exon e_start="11505" e_stop="11454"/>
          <exon e_start="11246" e_stop="11173"/>
          <exon e_start="10291" e_stop="10226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTAGCAATTGCATTGAAGAGTCTCTTCTCTGTGTTGGGATGTTTGATTACAGCCACCGTAATATACACCGTCGCCACTGATGGCCTTCCTTTCCGCATAGAACTCCTTACCCCGTATTATCCTTTTCTCTCTCTCTCTCTGTCATACTAATCCTACCTTGAATTTCATTTTTTTTTGGATTATTAATGCTCCTGTTTGGATGAATTGGGGTTTGAATCTTTATCAGTACCAAAATTTGTTGAATTATGGATATAGAAAGTCAAAAGCCCTATCTAAATGCTTAAATTATTCAAAAAAGGATCACTTTTAGTTACATTTTTATATTTTGAACGCCTAAACCTGGATTTCTTTCTCCTCACCTTTACTAAGACTGTTTGGATGATTTTAAGCATTGTTTCGTGTTATACTGTATCTTTTTAATGAATATAATGTTTGGATAGATTGTATTGTTCTAATGTCACACTTCAGGAATTTGAGTTATAAACTTACAAGAAAAGTGTGCTAATATGAAAAATGTAGAATAAGATTATTAAATAACATATAAAGACAAAAAGAGAAGAAAATATTAAAGGGATGACACGATCACACCAAATTAGTGGTTACATAAAATGAGATTTTTAATTGTTACAATATCATACAATAGAATTTAAGTAACGATCAAAATGAACATTGTATTTAAATTAACAATATAATACGATGGGTAACAACCATCCAAACAAGGTGTAAAAGTTCAAGCTGCTAGAAATAAGACACTCTCTGGATTTCAATTTATTTGTCATACTTTCTCTTTTCGTTCGTTTATACAGGAATGCTCCTTTTCCTTTTTAGCAATTCTTTAATTCTAACTTTGCACGAGACTTCTTTAAGACCGCAAGATTAAAATGTATTTTGATTTATTTGACAAATCTTTAGTTCAGAAGTTCCTTTTCCTTCCTTCAACTTGGTACCAAGTTAAAACAGGACAAGCAAATTGAAACCGAGGGAGTGACTTTTTTTAATTAATTATGTGTTTAGTTATCTTATAGTAGTCCCTCATTCTCATTTTATTGTGAAGTTGTTACTGTTTGGAGAGTCCAACACTTTTTTTATTTCAACTTTCTCAAACTTCGTTTGAATATTTTGAATCATTAGCTATGTTGATTTGCACTGCTTTTCATGTAGTTTACGAATAGAACAGTTCTATTTTTAAAAAAATGAAGAATCTATACCCAAATTCATACTCAAAATAAGATTTCTGACCCTTGTACTCCGACAGAGGAGTAATATTTCTTTTGAAAACGGTTAAGAAAAAGGAACTAACTTGAAATTGAGATTTTGATTTGAAAAACAGTTTAGTCCCATCTGTATTCTTGATGTTGTTATTAATACCACTTACCTTGTCAAAAAAATAAATAGTTCAGTTCCATCTGCTTTCCAGACAATCTGAAATGAGTGGGATGAATCTTGCAGGTGGATGGCAGCTACCCTGATAGATTTCTACATCCACATATTTGTTATATGGGTATGCCATGATTAATTTAATGCTTCAAAATGTTTCATATGTGAACCTTTATTCTAAAGTCAATTGCATTTTATTTTTCTACAGTTTCACTAGCATTAAATAATGAGGAGAACATGTTTAATTTGGCGCACCTACTATGTTAGATGTCAGAGATATAAATGGTATAGGAGTTAGAGCTATAAATGTTATAAAGGTTAAGATTCTCAGACATTTGTGCAAGGGTTTTAACTGCATTGTAAACAATATTTTTATTCCAAGACATTGGCCAGAATGCATCACATGTTACTATGTTTCTCTGCTCTTAACATCTAAGAGCAGAACCGCAAAAGCAATGCTCTCATGTTTTGGTGTGGTGTTTTCAGTCTTGGGTTGTCTACAAGGAATCAAACTGGATTACTGCAATACTTTGGGTGGTCTTGCTAGTATGTTTGGGAAGGTATGCCACCCCTATTCCTGTATATAGAACAACTTTGATGTACTTTTAGTTTCAGATGATGACTGTTCTTTAAGCTTTCTCTTAGCATCTCTTATATGACTAAATTCTCAGGTTGAATAGGTCTCTATCTGTTGACATACACTGTTTTTTGTCTTCACCCATGGGCATTACAGTCTTAGGATTGATGTTCCCAATTATTTATATCTTGTGTTCGCTGCTATGAATTCCCTTCGTATATAGATAACTTCCTTGATGATATACCCAGTCAATCAATCAACTATACATCAAGCAGAACTAGGTCCGCGATTTGAATTCTCTACATATTTCTTGCTATTTGGGCCCACATCATTCCAATACTATCTAGAAGTTTGTCTTGTAAGGCAAAGTTCAAGAAAATCTCTAAATGTCACACTTATGAATCTAATATTTGTGCAAAAGCATAAATTAAGCGTCAATGCACACTAGTTGGTCTTATTGATTTGGATCTTTTCTTCCATGTTACTTTTTCAGATTTGCAATGATTCCTAGATTTTTTAGGTCTTTTCAGACAACCTCCTCCATGTGATTTAGGCCTTTCTCATCCCCTTCAGCACCTTCAATCACCATGTTACGCCAGTTAACTGGTGTATATTTGATGTATTTTAGGTCTATCAAAGATGACTTTCTCTTACTATATCCTCTATGTGTGCAACTGCACCCTTTGTTTCAACATATATTCAATTTTGTATGACTGCACATTTACCTTGATGTCTTTTGGCAACTTGTATTGCATAGGATACAAATTTTCTTGCATTCCAGTGTTGATGACTGTCTTCCTTTTCAGTTTGTATTATCCTTGCATGTCATCAGAAGGCCATGTTGTCATTGCCCCTACAAAGTTCAATCAATATCATGCATAAATTGCCAGTTTGTGATTATATATTCAGGGATGGTGATAACATTCTCTCTACTCCCTTTACAGCATTGCTACATGTGGCTACATCGTGTTGCAATTTCTTAAGCTTTCAACTCAGGAATCTTTACAGGATCCAATTTACTTTGTCCTATTACGACGTCAGGAAAAGTGAGTAGATATTTGCACAAAGTTCTTTTTTCCTTCATAGTTTCTGTTTTTATTTCTCTTTGGAGACCAGAAAAAGAAAAAGAGAGTTCAATTGGAAATGATATTTAGTTCATATATTTTCATGTATGCATGTCCAACTGTTTGAGGATACTCGTGAAACTGAAATATCATGCACAAGTTTGGTGTTTGGTTGGAGAATATATTTGCAAATGTAATATATAACTGTTGTTAACAAGAGCTACTCTTGTTGTTTTTGCTTCAGTTGCGTATCATGCCTGTTGTTTTGTTCAGAGTAGACATGTAGTGAAAATATCTAGAAAAATGTGGTTCTCAGAATAAAAGAAATGAAATTACATCTCTTCACAGGTCAAGACAATGGTGGAAACATAGCTTGTACTGGGTCTGGCATATTTATGTTCATTGTTCATTGTTTTACTCTTTATTGATCATATACTTATAGAGGTAAAGTCAAAGAATGTAAATATCACACTTGGGTTTATCAAACTTTGGCATTTGTCTTGGACAAGAATAGTGTTCAAATGCCTCATCCCCATCTTGGAAAAATGAAGTTTTCAATCATAGGGAGAAAACAGATTAGTCAACGAAATGTTGCATCCTCCATTTGTGCAGGAGGAATTGCCAGTTGAATACTTTAAATATGTGCCTGGTTTATTTGTTAGATACATCTTCCATTTTGTTAGTAGAGTTAGATAAAAGGTAACTGTGACTTTAATGTTATTTGAGTCGTTTAATTATTCACATATTGGGAAAAGAAACTAAAATCAAGTATTCTCAACAATAAAAAATACAAGTATCTTATCAGCAATATACTAAAGAGATGAAAAATTTGTGATTCGTTTTGTTATTTAGTGACGAGTGTTGTCTTTCTCAGTACTTAGTATGTCATATGTAGTTTCCGAAATCAAAGTACTATTATGTATACCACTTCTTAAGAATATTGGCTTCTTTTATATATCAGTCATCCAAGATCTTTTAGTGGAATTACAATGGTGCTTCTAACTGCAAGTTGGATCATTCATTTCATACTGTGTTTTCTAGTTACCCTTGTTGTGGTTGTTTCTTTTGTACAAGCCCTGCTGTGTACTACGTTATCAGGTCATATAGTCATGACATGTATTGATAACCTACTCTTTGCCGAAAATAATTATACAAAGCTGTAACTGATAGAGTGTTCCTTTAAAAAATATAATATGCAAGTGTTCATGGAGTTTGAAGCTTTCCTCATCAATGTTGTATTAGTGGCACCTATATTTTGTTAGTTTTCTTTGTGAAAATGACCTTAACTTATAATGATCTGATGAGATGTTGTGATTTAGGACTGAAACAGAACAACAGAAGAAATGTTCTCTTTTAACTGCAAGAATTCTATTTCCTGCTTTGGGCTGTCTGATGCTAGGGACATTGATTTACACCATTGTAACTGATGGTTCTCCATTTCGCAGAGATGTTTTTACTCCGTAAGTTATTTGTTTGTTTATTTATTCCTATTTAAAACAGATACCATCAACCTTGTTTTTTTCTGGTTAAATGGAGACTTTGCTACCGATTTTGAGGATAGCAGCATTGGCGGAGAACTTTGTCGGTGCTTGAAAGTTTTGTTTGTTTTCTTGTTTGAACTATAATTAGATCTCCGCTCTGCTGCTTTCTAAATTGATGCACTTTATGGGGAAGTAGCATAAACCTCTCGTAACTGGAAGTTTTTGTGCTATTGTGGAGGAAAACTCCCTTTTCATTTATTCAATGTCATATCAGCATTTTATTTATTTAAGGAAGTATATATGTCTTCCTGGAATGAGTTCCTAAATGAGAGAATATCTGCACTACAGTGATTCGAAGGTTGGGATGAGGTTACTGAAAATGACTTGTGCTCTCAGAATGTATAAAATTTCTATTAATAATATTGCCTCTCTCATTTTTCATGAACAAGGACTATTGATGATTTCTTACCTCATGTTAATCGTTTAATCCTTATTTGTTTCTTACCGTGTTAACTTTAAATATTATAACATATGATTAGACTGATCTATGGTGAGCTTTATAACTTTTCCCTATGTAACATGATACTACCTTCAGTGTGACATATGTCGGATAATATGGTATCTATGGTATTTCGAACTCTATTTCTCTGATGCTAAATTTCAATCGGAATTTTTGTATTAATTATCCTCTTCTTTGGTTTGCAAAGTCTAACTAAAATAAGCTCTTTCTTCCTCTAAATGGATTCACTATGTACAGGTCATTCTTAGGGCCTAGATTCATGAAACTTATCAGCATTTCCTCTCTCTACTCTGGTTGATGTCGTGCAACCCTAGAAAATTGTCTTCTTCTTTGTCCAAGGGGCTGCGGTCTATCATTTGCAAATTTGTTTAGAAGTTGTTCTGGAAAACAAACTTCATGAGTTTGTGCAGAAGTAATACATATGCATCCTCTTACATCAGCCGATTATAATTTTCTGCTTGGTATAAGTCTTACTTTGACATGCAATTTAAGAAGTCAATTTATGTGCAGGTGGGTGATAGCAACAGTGATTGATTTCTATGTTGGTGTTGTGGCTCTCTCGGTAAGCTTTTCACTGTTCATCTGCCTTTTTTTAAAATAATTTTTTTTTGGGAAATTCCCCTCTATTTATCTACCTTTGCTTTAGGAAGTCCAAAGTTTGTAAAATTCGATATATGGCTAGAGCCAGTTGCTGCATTAGGTGTCAAAATCATCAGTTAGGACTTTTCATGTGATTATTTATCTTAGATGAGTTGCACTGTTTTTTCAGGTTTGGGTTGCTTATAAGGAATCAAGTTGGCTGAGTGCAGCTTTATGGATAATACTTATAATTTGTTCTGGCAGGTACATGTTTTTTTTGGATAATGCATAAATTGTACTCCTCCATTCCATTTTATACGATGTAGTTTGACTGGACATGGAGTTTTAGAAATATGGAAATATTTTGCAATCTTTCAAAACTACTCTCTAAAAGAAATAATTTTTTAAATAGAAGTCGTGTACACCTATTGGAATTTTTGTCAAATAAACAGGATCCAACATGGGTAAAATGTAGATAGTGTCATTAAATATTTGCCAATTAAGGAAATATGTCAATTCTTTTTGGGCAAACTAGAAAGAAAAATGTGTCATATACATTGGAGCAGAGGGAGTATCAGTTTGAAGTTAGCTTCATCAGTACATCGTCTTATTTGTTGCTCTATGTAGGTGAAAGCAAAATATGAACTCTCATTCATATGTAATGGAATGAGGAGGAGTTCATATATATATGTGTTTGCATGCCTTAATGTGATTCTGAATGAGAAGAGGTTCTGTGAATTTGTCGAAATAACTTAAAAGATCTTGCTTGTTTGGCAAGAAGTCAATTAATATTTCAGCCTTTGCCTATGGCAACAACTTCATTAATAACTAATCTGCATTATTACCTTCTTCCATGCATTAAGCTTTAAGTTTTTAGAGTTCTCCTAAACATGAGTTAATATTCCATCATGAATAACCATAGTTCAATCTAGTTAGTATTTCCTAGACTTTATATTCCTTCAACTATATGTCTGTAAAGGACGACTTCATTATTTTCTATTGTGTTTCTTTTTCTCATGCCGGCAATTTTCTGGTCCCTCAAAAACTGATGGCACTTTTTCCGGCTATATTTATATGATATGTTACAACAATTTGTTTTTGGACCATAATTATATCTAATTCGTGCTTTGTGTTGATTTCCTCAGCATCAGCACATGTGCCTATATAGCTCTTCAGCTTTTCAATCTTTCATCTCAAGATCCCGTCTACCT</genome_strand>
        <mrna_strand>CAACTTTAGCAATTGCATTGAAGAGTCTCTTCTCTGTGTTGGGATGTTTGATTACAGCCACCGTAATATACACCGTCGCCACTGATGGCCTTCCTTTCCGCATAGAACTCCTTACCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCAGCTACCCTGATAGATTTCTACATCCACATATTTGTTATATGG..........................................................................................................................................................................................................................................................................................................................................................................TCTTGGGTTGTCTACAAGGAATCAAACTGGATTACTGCAATACTTTGGGTGGTCTTGCTAGTATGTTTGGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCTACATGTGGCTACATCGTGTTGCAATTTCTTAAGCTTTCAACTCAGGAATCTTTACAGGATCCAATTTACTTTGTCCTATTACGACGTCAGGAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGAAACAGAACAACAGAAGAAATGTTCTCTTTTAACTGCAAGAATTCTATTTCCTGCTTTGGGCTGTCTGATGCTAGGGACATTGATTTACACCATTGTAACTGATGGTTCTCCATTTCGCAGAGATGTTTTTACTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGATAGCAACAGTGATTGATTTCTATGTTGGTGTTGTGGCTCTCTCG...............................................................................................................................................................................................................GTTTGGGTTGCTTATAANGGATCAAGTTGGCTGAGTGCAGCTTTATGGATAATACTTTATATTTGTTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCACATGTGCCTATATAGCTCTTCAGCTTTTCAATCTTTCATCTCAAGATCCCGTCTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273806" ref_strand="+" ref_description="SGN-E273806 [cLEN-7-H4]">
      <seq>tcttgtttgaactataattagatctccgctctgctgctttctaaattgatgcactttatggggaagtagcataaacctctcgtaactggaagtttttgtgctattgtggaggaaaactcccttttcatttattcaatgtcatatcagcattttatttatttaaggaagtatatatgtcttcctggaatgagttcctaaatgagagaatatctgcactacagtgattcgaaggttgggatgaggttactgaaaatgacttgtgctctcagaatgtataaaatttctattaataatattgcctctctcatttttcatgaacaaggactattgatgatttcttacctcatgttaatcgtttaatccttatttgtttcttaccgtgttaactttaaatattataacatatgattagactgatctatggtgagctttataacttttccctatgtaacatgatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="12708" stop="11649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12408" g_stop="11949" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E273806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12408" e_stop="11949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTTTGAACTATAATTAGATCTCCGCTCTGCTGCTTTCTAAATTGATGCACTTTATGGGGAAGTAGCATAAACCTCTCGTAACTGGAAGTTTTTGTGCTATTGTGGAGGAAAACTCCCTTTTCATTTATTCAATGTCATATCAGCATTTTATTTATTTAAGGAAGTATATATGTCTTCCTGGAATGAGTTCCTAAATGAGAGAATATCTGCACTACAGTGATTCGAAGGTTGGGATGAGGTTACTGAAAATGACTTGTGCTCTCAGAATGTATAAAATTTCTATTAATAATATTGCCTCTCTCATTTTTCATGAACAAGGACTATTGATGATTTCTTACCTCATGTTAATCGTTTAATCCTTATTTGTTTCTTACCGTGTTAACTTTAAATATTATAACATATGATTAGACTGATCTATGGTGAGCTTTATAACTTTTCCCTATGTAACATGATACT</genome_strand>
        <mrna_strand>TCTTGTTTGAACTATAATTAGATCTCCGCTCTGCTGCTTTCTAAATTGATGCACTTTATGGGGAAGTAGCATAAACCTCTCGTAACTGGAAGTTTTTGTGCTATTGTGGAGGAAAACTCCCTTTTCATTTATTCAATGTCATATCAGCATTTTATTTATTTAAGGAAGTATATATGTCTTCCTGGAATGAGTTCCTAAATGAGAGAATATCTGCACTACAGTGATTCGAAGGTTGGGATGAGGTTACTGAAAATGACTTGTGCTCTCAGAATGTATAAAATTTCTATTAATAATATTGCCTCTCTCATTTTTCATGAACAAGGACTATTGATGATTTCTTACCTCATGTTAATCGTTTAATCCTTATTTGTTTCTTACCGTGTTAACTTTAAATATTATAACATATGATTAGACTGATCTATGGTGAGCTTTATAACTTTTCCCTATGTAACATGATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204643" ref_strand="+" ref_description="SGN-E204643 [cLEC-14-G24]">
      <seq>agcaatggccttctcacattttctccccttttcagtacgctacctttctctcttctgcaacactcgaagacgaagaccgaatactcaaaaatggcagcaactttagcaattgcattgaagagtctcttctctgtgttgggatgtttgattacagccaccgtaatatacaccgtcgccactgatggccttcctttccgcatagaactccttaccccgtggatggcagctaccctgatagatttctacatacacatatttgttatatggtcttgggttgtctacaaggaatcaaactggattactgcaatactttgggtggtcttgctagtatgtttgggaagcattgctacatgtggctacatcgtgttgcaattgcttaagctttcaactcatgaatctttacaggatccagttgactttgtcctattacgacgtcaggaaaagactgaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="17436" stop="13734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17136" g_stop="16922" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16921" i_stop="15586" i_length="1336">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15585" g_stop="15534" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="267" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15533" i_stop="15172" i_length="362">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.318" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15171" g_stop="15098" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="341" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15097" i_stop="14137" i_length="961">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14136" g_stop="14035" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="443" r_length="102" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E204643" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17136" e_stop="16922"/>
          <exon e_start="15585" e_stop="15534"/>
          <exon e_start="15171" e_stop="15098"/>
          <exon e_start="14136" e_stop="14035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATGGCCTTCTCACATTTTCTCCCCTTTTCAGTACGCTTCCTTTCTCTCTTCTGCAACACTCGAAGACGAAGACCGAATACTCAAAAATGGCAGCAACTTTAGCAATTGCATTGAAGAGTCTCTTCTCTGTGTTGGGATGTTTGATTACAGCCACCGTAATATACACCGTCGCCACTGATGGCCTTCCTTTCCGCATAGAACTCCTTACCCCGTATTATCCTTTTCTCTCTCTCTCTCTGTCATACTAATCCTACCTTGAATTTCATTTTTTTTTGGATTATTAATGCTCCTGTTTGGATGAATTGGGGTTTGAATCTTTATCAGTACCAAAATTTGTTGAATTATGGATATAGAAAGTCAAAAGCCCTATCTAAATGCTTAAATTATTCAAAAAAGGATCACTTTTAGTTACATTTTTATATTTTGAACGCCTAAACCTGGATTTCTTTCTCCTCACCTTTACTAAGACTGTTTGGATGATTTTAAGCATTGTTTCGTGTTATACTGTATCTTTTTAATGAATATAATGTTTGGATAGATTGTATTGTTCTAATGTCACACTTCAGGAATTTGAGTTATAAACTTACAAGAAAAGTGTGCTAATATGAAAAATGTAGAATAAGATTATTAAATAACATATAAAGACAAAAAGAGAAGAAAATATTAAAGGGATGACACGATCACACCAAATTAGTGGTTACATAAAATGAGATTTTTAATTGTTACAATATCATACAATAGAATTTAAGTAACGATCAAAATGAACATTGTATTTAAATTAACAATATAATACGATGGGTAACAACCATCCAAACAAGGTGTAAAAGTTCAAGCTGCTAGAAATAAGACACTCTCTGGATTTCAATTTATTTGTCATACTTTCTCTTTTCGTTCGTTTATACAGGAATGCTCCTTTTCCTTTTTAGCAATTCTTTAATTCTAACTTTGCACGAGACTTCTTTAAGACCGCAAGATTAAAATGTATTTTGATTTATTTGACAAATCTTTAGTTCAGAAGTTCCTTTTCCTTCCTTCAACTTGGTACCAAGTTAAAACAGGACAAGCAAATTGAAACCGAGGGAGTGACTTTTTTTAATTAATTATGTGTTTAGTTATCTTATAGTAGTCCCTCATTCTCATTTTATTGTGAAGTTGTTACTGTTTGGAGAGTCCAACACTTTTTTTATTTCAACTTTCTCAAACTTCGTTTGAATATTTTGAATCATTAGCTATGTTGATTTGCACTGCTTTTCATGTAGTTTACGAATAGAACAGTTCTATTTTTAAAAAAATGAAGAATCTATACCCAAATTCATACTCAAAATAAGATTTCTGACCCTTGTACTCCGACAGAGGAGTAATATTTCTTTTGAAAACGGTTAAGAAAAAGGAACTAACTTGAAATTGAGATTTTGATTTGAAAAACAGTTTAGTCCCATCTGTATTCTTGATGTTGTTATTAATACCACTTACCTTGTCAAAAAAATAAATAGTTCAGTTCCATCTGCTTTCCAGACAATCTGAAATGAGTGGGATGAATCTTGCAGGTGGATGGCAGCTACCCTGATAGATTTCTACATCCACATATTTGTTATATGGGTATGCCATGATTAATTTAATGCTTCAAAATGTTTCATATGTGAACCTTTATTCTAAAGTCAATTGCATTTTATTTTTCTACAGTTTCACTAGCATTAAATAATGAGGAGAACATGTTTAATTTGGCGCACCTACTATGTTAGATGTCAGAGATATAAATGGTATAGGAGTTAGAGCTATAAATGTTATAAAGGTTAAGATTCTCAGACATTTGTGCAAGGGTTTTAACTGCATTGTAAACAATATTTTTATTCCAAGACATTGGCCAGAATGCATCACATGTTACTATGTTTCTCTGCTCTTAACATCTAAGAGCAGAACCGCAAAAGCAATGCTCTCATGTTTTGGTGTGGTGTTTTCAGTCTTGGGTTGTCTACAAGGAATCAAACTGGATTACTGCAATACTTTGGGTGGTCTTGCTAGTATGTTTGGGAAGGTATGCCACCCCTATTCCTGTATATAGAACAACTTTGATGTACTTTTAGTTTCAGATGATGACTGTTCTTTAAGCTTTCTCTTAGCATCTCTTATATGACTAAATTCTCAGGTTGAATAGGTCTCTATCTGTTGACATACACTGTTTTTTGTCTTCACCCATGGGCATTACAGTCTTAGGATTGATGTTCCCAATTATTTATATCTTGTGTTCGCTGCTATGAATTCCCTTCGTATATAGATAACTTCCTTGATGATATACCCAGTCAATCAATCAACTATACATCAAGCAGAACTAGGTCCGCGATTTGAATTCTCTACATATTTCTTGCTATTTGGGCCCACATCATTCCAATACTATCTAGAAGTTTGTCTTGTAAGGCAAAGTTCAAGAAAATCTCTAAATGTCACACTTATGAATCTAATATTTGTGCAAAAGCATAAATTAAGCGTCAATGCACACTAGTTGGTCTTATTGATTTGGATCTTTTCTTCCATGTTACTTTTTCAGATTTGCAATGATTCCTAGATTTTTTAGGTCTTTTCAGACAACCTCCTCCATGTGATTTAGGCCTTTCTCATCCCCTTCAGCACCTTCAATCACCATGTTACGCCAGTTAACTGGTGTATATTTGATGTATTTTAGGTCTATCAAAGATGACTTTCTCTTACTATATCCTCTATGTGTGCAACTGCACCCTTTGTTTCAACATATATTCAATTTTGTATGACTGCACATTTACCTTGATGTCTTTTGGCAACTTGTATTGCATAGGATACAAATTTTCTTGCATTCCAGTGTTGATGACTGTCTTCCTTTTCAGTTTGTATTATCCTTGCATGTCATCAGAAGGCCATGTTGTCATTGCCCCTACAAAGTTCAATCAATATCATGCATAAATTGCCAGTTTGTGATTATATATTCAGGGATGGTGATAACATTCTCTCTACTCCCTTTACAGCATTGCTACATGTGGCTACATCGTGTTGCAATTTCTTAAGCTTTCAACTCAGGAATCTTTACAGGATCCAATTTACTTTGTCCTATTACGACGTCAGGAAAA</genome_strand>
        <mrna_strand>AGCAATGGCCTTCTCACATTTTCTCCCCTTTTCAGTACGCTACCTTTCTCTCTTCTGCAACACTCGAAGACGAAGACCGAATACTCAAAAATGGCAGCAACTTTAGCAATTGCATTGAAGAGTCTCTTCTCTGTGTTGGGATGTTTGATTACAGCCACCGTAATATACACCGTCGCCACTGATGGCCTTCCTTTCCGCATAGAACTCCTTACCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGCAGCTACCCTGATAGATTTCTACATACACATATTTGTTATATGG..........................................................................................................................................................................................................................................................................................................................................................................TCTTGGGTTGTCTACAAGGAATCAAACTGGATTACTGCAATACTTTGGGTGGTCTTGCTAGTATGTTTGGGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCTACATGTGGCTACATCGTGTTGCAATTGCTTAAGCTTTCAACTCATGAATCTTTACAGGATCCAGTTGACTTTGTCCTATTACGACGTCAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539009" ref_strand="+" ref_description="SGN-E539009 [TUS-58-I20](-)">
      <seq>ggtgcagattgctgtgttttggtctatgatgttaatgtaatgcgatcctttgatacccttgacaattgcnatgaagaatttctcaaacaggctaatccgccagaccctaaaacatttcctttcatattactggggaacaagattgatatagatggtggaaatagccgagtggtttctgagaagaaagcaaaggagtggtgtacttctaaagggataccttactttgagacatcagcaaaagaggatataaatgttgatgctgcattcttgtctattgcaaaaactgccttggccaatgagcacgagcaggatatatacttccaaggcattccagaggcagtttcagagactgaacaaagaggtggctgtgcatgctaaggcggatatagtaattccatcgagtgccatacttgatccatgttgttgtgtattatttctgcaaccgtatcataactctccggccatagccattcttttgtacccactattatatactactatttgatttcttcagtgttgttttgggaagagaagcatcttttgttacatttcagttactggaaggtagagaaactcagaaggatttcacttagtattgcagttggctttgacagagattataactgtgcatctttttttattttctccattgggtggttggttttattgtataatctgaaagagctgtatttttctacatctacgtataaataatgtgttggactcgtaactgctactgtgcttcattgccataaattttcgaaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="28423" stop="18384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28123" g_stop="28034" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28033" i_stop="27656" i_length="378">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27655" g_stop="27575" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="171" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27574" i_stop="27425" i_length="150">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27424" g_stop="27282" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="314" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27281" i_stop="19139" i_length="8143">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19138" g_stop="18676" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="777" r_length="463" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E539009" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28123" e_stop="28034"/>
          <exon e_start="27655" e_stop="27575"/>
          <exon e_start="27424" e_stop="27282"/>
          <exon e_start="19138" e_stop="18676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAGGTTGGGTGATTATTCTCTGGGATTCGTTTGGTTCAGTAAATTTTTTTATTAAGTTGCTTAGGGTATCCTGATTGCTTAGTGTTTATACATTGCTATGAGTCGTGTTATCAACAAATTAGCAAATGCCTCTGAGACACTTAGTTAAACGCCTTTGAGACTAATTAATTCCTTCATTGTTTTCCTGTTTAAAGGTAAAAGATTTGGGATTACGTTGTGCATTTATAGAGTTTCACGTGTAAATTATGCATTCAAATCTTAATTGGACTACTTCTGTTATAACTTTGGAATGTACATCATTTCCTCATGCAAATATTGACTTATTGGTGTATTAAGATAAGTTGTGATCCATTTTAACCAACATAATTTATTGATATGCAGGCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAGATGGTGGAAATAGCCGAGTGGTAAGGCAATGATAGCGGTAGACTTTTCAAATTATGGTCTCTGGATTGTGTGTAACTCTTGCTCTTGATTGATCCTCTATGGAAGTTTCCTTTTCTTCAGTTCTCTCTCTGCAATAATTGTGACTGATTTGTCTTTTGCATGCTGAACAGGTTTCTGAGAAGAAAGCAAAGGAGTGGTGTACTTCTAAAGGGATACCTTACTTTGAGACATCAGCAAAAGAGGATATAAATGTTGATGCTGCATTCTTGTCTATTGCAAAAACTGCCTTGGCCAATGAGCACGAGCAGGATATGTGAGTTTTTGTGAATTTTCATGAATATAAACAACTCACTGTTGTTTGTTGCTTTTATTATTATGTGATATGGTGCTTACATACCTTGGAGCTTTGCATTAATAATAATATGAGCTAACTCAAGGGATGGGCTTGAAGGTGTTAAGTGAATTTATTCTAACATGTGACCACCCCTCGAATGTACAAGAATGTTTGCTAGTGGAGTACGATGAAACTAACATTAAGGGGATACTCGGGAGTTCAAAAATTTTTCTGGAACGGTGTGTGACAGAAGTCACTTGTCAGGATAATATTTTTCATGAGAGAGTCATTTTCTGATATTCAGTTGACAGAAACATATAATGGGCGAAAAATGACCTCCCTACGGTGGGAAGTGATCTACACTCAAACTATCTGGACTTTAAACTTCATATCACTTGCTTTAGCTAATACCTAGATACTGTTATTAATCTTAATACTCAAATCTCATCAAAACACTTACAAATTTACTAAGATTATTATTAATCTTTAATATGTTGTTTTCAAAATATACTTTTCACTCATCAATCAAACACTAGAATTTATTTTTCAAGATTAAGATTTTCCTTGGAAAATGACCTGTGTCATTTTAAACACACTTGAAACATTTGATTATTTTGGACAAGAAGATTGTTTGGTTTTGTTTTCTCAAAAAGTTTTTAGAAGAAAAAAGGCAAAACATATTAAATCATAAACCAAACAACAGGCTAAGAACTATTTTAGGTTCAAAATTCAAACAAACCATTGTAACTTTGAAATAACTATTCTTGCACGTTTTGTTTTTCTTTAATTCCATATAACATTTTGGGGGAGGTTCTCTAAAAACCATTCCAAGAAAAACTGCCCAAGGTTCATCTAAGAAACTCTCTTCTTGTTGCATGCATAAGATATCTCTTTAATCATAGAGATTCTCCTTACTTTCATATCTAGTTTATGATAACTATCACATGGAAATTATGCAGGAGAGAGTTATATTGAAGACTAGATAAGTAGACATTAGAATATTTCTTGTAAGGCTAGATTTTGAAGTCTAAAATCCATTAGTGGCAGAAAATGTGATAAGAAGACTGTGAAATCAGTGTTTGACTTACCATAAAGAAAGATAGAGTAGTAGTAATATAGTATTTTAGCATAGTTAGGAGTAGTTTTTGGGATGCTGCACTGCTGTATGTAATATGTAAGTTGTCATGAATAACCTTAGTCCATTAGATAAGCAGTATAGTATTTTATAGTTAACCCTTATCACCTTCTTGGTGCTGGTGTTATAGAAACAAATTACGTATGAAAATATACGCCAATATCAGGTGATTTATTTTCAGAACCATTTTGTGGCCCATCTCAGTTTTTCTTTTTGTGAAGACATTAAATCAGGGATAACATGAAATGAATCTTCACCACAGCATAGCAATGGTCTGCAAGAAAGTCTTTTCCAGTAGACCCAATTGATGATTAGGACTTCAAATCATGGAAAAACAGCATAAGGTGTTTATAGCATAAACATTGCCTTGGGAGGGATAACTAGGCAGGATAATACTTATCAGAGAAGTGTGTTTCTTGGGCTTTTTTTAGCGATATGTTTTGCAGACATTCTGATCTATTGCACTTATAGACGAAGAGCAAGACTGTACCATAGCTCTTGTGAAGGTTCCGACCTATCATGCTAGGGAGATGAATAAATCCTACTTAGGTGGTGAATCTGAAATAGTTCCGGCTCTTTGCGTCTTTGTCTCTGTGACTCCTTTTTATTTTGATTAGGTAAAGGTACTATTATTTAAACCGTACCAAGAGGGTTCCAGGGGAAGTACAAGAGGTCAGAATTTATGATTTCCTTATTGACTCAACGAGCCCAAAAATTGTGACATCTTCTCTAGAATGTAGCTTATACATCAAAAATATAGATTTTGTAGACAGTAAACTATACAAAGGAAATATGTTTATTCTTCCTTCCAAGCCTCTACTTTTTTTTCAGCCACACGGTCTAGTTTTCCAAAATTATGCACATAGGAATAGTCTTCCAAGCCTCTATGTATCTTTTGTCGTCCTTCTGCTCTTGCCAGCATATTAGGGTCTTCCTAACATCCGTGGCCTGCTTTACTCGAAACAGGTTTGTGAACAAAGGCCAAATGTGTCAGGTAAAGCTACAGAACAGAAATATATGGCTGCTGCTATCTAGGGAACTATTGCAAAGAAACACCTGTTACAGAGTGAAAGACGCCTTCTTGAGTAGGGACAAAACTGCCTGCTGTTTACTCATAGATCATTTGGTGCATTTGGCACAAAATTTGGTGAACTTTGATAGAATGAACACTATAGAAAATGAGTTCCTTTAACGGGCTACTGAATGTAAGATGGGTGTGAAAGAAGACATATTCCTAATTATGCATCAAAAGGTGTGGCAAAGTGGTCAATGAAGTGGTAGAACCATATAAGCTTAGCTCAAATCGCAACAGATATGTGCAAGCATTGGTGAATAGAGTTACCTTGTATCCGTGCTGGTGGGATGTAGCAGGTACCCCACGGAATTAGTCAAGGTGCAGGCAAGTTGACCTGGACACCACGGTTATTGATAATAGAAGAAATATTGCTGATTATTCAGCGGAAACAACATGATGGATTCATTCCTATTTGAGTTCTTTACATAAATGATGTAGGATGTAGAAAAACTTAGTTGATGTTATGGTGCAAGGAATATTCAAGTATTACCTGTTTAGAAGGTACTTTCTATTGGTTCTTGTATCTGAGGTAAATGTTGTGATAGCAAGTTGTTGATATGAGAGAAAGGCATCCTCCACTATGCTTGCAGGAACTATTCACATCAAATGGTGACTTTGTGTATAGTACTTAGTAGATCTTTGAAGAAATAACAAGTGTTGCTGTAGTTGAAGAACAAAAAGCAAGTCTCGTTGTTAGAATGTTTGTGGAATATTTACAAGAGCTGAGTTTTTAAGTTAGACAAGCAAAAGATCCATACAGGTACTAGCTAGTTAAAATTAATGTTAAATGTTTGTTGAAGAATTATGAGGATGCCAAAACCTTAAGGCAACAATGGAGTGACCTAGGAAACTCTGAAGCCCTTGGGTACACTTGTACAATCAATGAGGAAAAAGTGTCCTCTTAATACCGCCTTAGATGTGTAACCTGGTTCTACGGTTTACACGCATGGACTGAAAATTCTTGTTTTGTTTCTTTCAATTTGGGTATATTTAGTCTTTAGGATGAGGTTTGCTTACAACCCACCCTCCACAGACCTCACTCGTGGAACTATACTAGGTATGTTGTTATTTTTAGGGAGAGAGAGAGGAGGCTCAACATGAGTAGGTCAAGTAGGGAGAGTAGTGTGAAGATACGACTTTGGGTCTTGTGAAATTAGGTCTTATGCCTAATTCACATCCCAAAAGCTAGCTCAAAGGGAGAAGGATTGTCCAAGCCTTATAAGAATTCCACCCATCTCATTAACCACCGATGTGGGACTTTTGTCATTCTTTAACACCCAACCTCACGCCCAATGCTTAGCATCTGGTGCGTGAATAATTTCGATTTTTGGGACCCAACATCGAGTGAGACGGGCCCTACTCTGATAGGACCGAAATAAGCAGGTGTAAATGCGAAAGCTAGCAAAGCAAACCTCGAATGACTTGAGTAAGAACTAAGAAGACAAATGAGAAATACACCAAAAGAGATAGAAATTTAATGTGGTTCGGTTAATCGACCTATGTCTACAAAAGAACTGAGCAATCCACTATAAATATGAGAGTACAAAATATAGAGAAAAACAACCTTAACCAATTTCCTCAAAATACAAAGAGGGCTCAAAATTCTTCCCATGTAACAACTCTCAAAATCCTATGACTACATTGTGAATGCTAATTGAGTTAGAAAGAACAAACCTATATATTCATAGAGTGCTAAAACCTTTTCCTACCACAAAAAGACTACTCAAAATATTAAAACTTTTTTCTAAAAGGAATACTTATTTATATAAACCCCAATAATCTCCAATTTGGCCTGAATTTCTGACAAAATTATTTTGTCCACCTTCTTCACATGATCTTCAGGATCTTGCATCTTTTCTCCATAATCTCTTCCATCAAATCTATGTCTCGACACAGAGAACCTATTTGAAATAATTTCTCCAACATAGATCTTCATTACTATCAAAAAGGTTATGCGGTTAGTACTACACCTGCCAAGATGAACATCCAATTTTTAATTTGGTTCCATCAACAACCGTTGCACCTGGCTCTGATATAATGTGAAATTAGGTTTTAGGCCTAACTCACACCCCAAAAGCTTGCTCAAAGGGAGGAGGATTATCAAGCCTTATGAGGATCCACCCATCTCATTAACCACCAATGTGTGGGACTTTTGTCATTCTTTAACACCCAACCTTACGACCCTTCAAGGTGGCCAATGGTTTGAGCTTGGGACTTTCATGTTAGAGGTCTTAAGTTCAAAACTCCTTGCTAGCGAAAACAAGGGGTTTGCCTTTTGGGTCGAGCTCGTGCACCAGGTTTGCCTAGTGCGGGTTACCTCTCCTATGTAGTTTGCGAGCTATTGCATCGTAGCGGGGGTTTTACCTGTGCGCACCCAAAGGGTAGCGACTGTGGGTTTACTTGACATTAAAAAAAAACCCATCTTACGCCAATGCTTAGCATTTGATGCGTGGACAATTTTTGATTTTGTGGGCGTCAACATCGGGAGAGATGAGCCTTACTCTAATACCATGTGAAATCAGGTCTTAGGCCTAAATCACACCTCTAGAGCTATAACTTTTGAGGTGTGAGTTAGGACCAAGACCTAATTTCACAGGTCTAATTCGGCCTAAAGACTGGTTGAAGTGAGGATTGACCAAGTCCATATATGGAGACCACTAGCCCATTTTCCAAATAATGTGAAACTTCAAACCACTCTTGTATACCCCTGCACTCCCAAACCGCCAATTGGAGAATGTTGAAAATAATATTGGGGGCTCTAGTATAGATGGGCTTGGCTCTAGTACCATGTGGAGATATGACCCTCTGGCCTAACTCAACCTTTGAATATAGCTCTTTAGAGGAGAATTAGCCGAGTCTATATAAGAAGACCACTAGCCCATTCCCAACCAATGTTGGACTCTCACTTAGTCTAACAGGTTCAACAAGCTAACATTGGGTTGGAGCAATGTTAGTGATTCTATGGGCTGAATTTGTGAAAGAGAAGCATAGAGCAACTTCGTGGGCTGGGTTGAGAGAAAAAAAGCTTAAAGTGGCTCAATGGGACGAGTAAAGAGAAGCTCAGAGCATTACAGTAAGTAGAGAGAAGATAATTGTGCAAAAGGACTGACCAATGTATGGGTTCCATGGGAAAGGATCTGAGCTTCCAAACCAAAAGCTTAGTCGCTGAATTAAATACTTAGGCTGTCAGTAAAGCCCCTGCTTTTGTCACTTAAAGCAATGAGACGATGCGAAGCAACTGTTTATTGTTTCACAAGTAAAACAATGCACTTCAGAGAAGTGTGTGCTTAAATTTATGATGCACAAAGTTATCCAAATGAGAAGTGACATGCTCCTTGAGTCTCAATTTTGAGAAGTGACATGATCCTTGAGTCTCAATTTTGGATAGTTGGATTATATCCACATTATTGTATACGAGATGCTAAAGTTAGTTTTCTTGATTACATTTTGGTGATGCGTTTCACTTCTCACTTTTCAGTTCAAGTTCAATGAATCTTTCATATGATTGAATTTTTTGCTTTTAAAAACACCGAGTTCAAAGTATCATAAACCTCTTTGGAAACCCTTGTACAATCGACGACGATGAGATTGAAGGTCAAGTGTATTCTCCAAATTGTTTTTTGATAAATACTCTTTCTTTTTGATAAAATATACATTAGGCTTCGATAGGTATAAGTGTGAGAATTTGATGAATCTCTAATTTTAGGAAGTTCCTAATTTACCTAAAAGACAATTTTGCCCCTCTTCTTTCATCTATAAGTTTGTTCTTGGTTATACTGTAGGGCCAAATATTTCCACCGAAGTATGCAAAAATACCCCTCTTTTTAACGGTTGTCCACATACCTCAACGCCGCATGGCATGCCACCTCACCGCCAAATTTTCATTCTTTTTCCTTTTCTTTTCCTATTCCTTTTCTCTTTCTTACTTTTCTTCTTCACAAACTTTTTTCCCCTCTTTTTTCCAATGGCTTCCAGCAAATTCCCTTAGCTATACCTCAATAGCATCTTCCCCAATAACCCATAAAACTCACCAATTCCCTTTTTCCTCATTCATAAGAACCTCGTTCTCTCTGTAAACAAAAATCCATTAACCCAATAAATTAAAAATCAGGAAAAAAAAGAAAAGGAAGGTTCATTGATAGATACATATGCATCAAACACAACTATTATGAAATAAAATCTAAAAATGGTACAGCCCCCAGGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTAGCTTGGGTCACAGGTTCAAGCCCTACATCATGCAAAGTGAAGCCCGGTATTTAAGTGGAGAAGGGTAAAGTGGCGGGCCCATTGCCCACTGAGTTTAGAAGGCGGTAAGTGGTCCAAAGGGCGGGTCACAGATGGATTTCTCATTTATCAAGAAAATAATAAAATAAAATCTAAAAATGGTATCTTCAGGATAGGAATATTTCTAAAACTCCAAAACTCGTGTATATGGCAATGGAAGTATGAAGTTCAATTCTCTGAAAAATAGATATCAAAGAAAAATAAAATGAACACACAGATGGCCATCCTTATAGACGCTACAGAAAGAAATTTTCCTTTCATTTATGAGCAAAAGTAATGACTATTCGGGGGAAATGGTAATGGTGCTTTTACTGTTATTGGATATGGAAATTTGGTGAAGTATTGAAGAAGGGCTGTGGTGTTTTAGCCTTTAGGGAACAGAGATAAAATCGGAGCTCCAGGGAGAAGAAATAGAGCACCGAGGAAATGATGAGTTTCACGCGTTACTGGGAAAGATGCCATTGAGATATAGCTATAGGAAAGTGATGGATGCAATTGGAAAAAGAGAAGAAAAAAAGTTTGTGAAGAAGAAAGAGAAGGAAAAAAGAAAAAGAAGAAAAGGAAAAACAATTAAAATCTGGTGGTGAGGTGGCATCCACCTCACTCAAATGTCAGGCCATGTGGACAACCATTAAAAAGAGGGATATTTTTTCATACTTCGGTAACGGCAGAGACATATTTGTCCCTATAGTGTAACTAGTGAAAAACTTAACTAATAAATGAAAGTAGAGGGGTATTTTTGACCATTTCCCCAAGAATGAAATAGGGCTAACAAGTGGAATGAATGTAGAAGATACACATCAGCAATGCCTACTAATTTGGGATAAGGGTTATGTTGATTGATCGAGTGATATATTTCAGGACCTACTAGTTAGGGTAGAATGCTTTTGCAAAGGAGGTGCCGGTTGCAAAACAATAGTCTCATAAATGTTTTTTGATGTTTTCAAGCTTTATTTCTAGTTGAATGCTACAGTCCTTGAGTTAATGCTGATGAAAGCAACGGGGATATAAATCCATTTATCCGTTTTTTATCTGTAATGATCTTACATTATTTCTGTCTTTTTCTTGATCTTAGACAGGCATATGAACCTTATTCTACTAGATGAAGTGAAACACTTTTAGCCCTATTCAATTTGAAGTTTGTTAGCTTTTTTGAATCTTATTTTATCATGCATTTTGGTAAATTTTGAGAACTTGTTGTCTAGATTTTGATCTTGGGGTGACAGGTTGACTTTTGATGATTGACTCAAAAAGTAGGGTTGACAACTAGATATGCTCAACCGATTTTGTGTGTGACCTTATGTTGGTTTGGGAGGTCTAACTTAGTAGTGACTTTGTTTGGTGTCACTAATTTACCTGCCTAAAAATCTGATACTGTCTAATAGAGACGATCACGTGATATCTCAAGAGTTGATTATGCTGGCTCAACGGATTAGAAAGAAGTGAGGGAGCAGCATCAATTTTTTCATAGATAATAGTACATCTTAATGTTTTGTTTATGTTTAGCCTTTGTGGTATTCTGTGGGAGCTCAAATCTTAAGTAACTCTGACGTATGAACCGTATATACTGAACAGCATCTTTGTTCTGTTTTGCAGATACTTCCAAGGCATTCCAGAGGCAGTTTCAGAGACTGAACAAAGAGGTGGCTGTGCATGCTAAGGCGGATATAGTAATTCCATCGAGTGCCATACTTGATCCATGTTGTTGTGTATTATTTCTGCAACCGTATCATAACTCTCCGGCCATAGCCATTCTTTTGTACCCACTATTATATACTACTATTTGATTTCTTCAGTGTTGTTTTGGGAAGAGAAGCATCTTTTGTTACATTTCAGTTACTGGAAGGTAGAGAAACTCAGAAGGATTTCACTTAGTATTGCAGTTGGCTTTGACAGAGATTATAACTGTGCATCTTTTTTTATTTTCTCCATTGGGTGGTTGGTTTTATTGTATAATCTGAAAGAGCTGTATTTTTCTACATCTACGTATAAATAATGTGTTGGACTCGTAACTGCTACTGTGCTTCATTGCCATAAATTTTCGAAATGAATTTATTTT</genome_strand>
        <mrna_strand>GGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATACCCTTGACAATTGCNATGAAGAATTTCTCAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................GCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAGATGGTGGAAATAGCCGAGTG......................................................................................................................................................GTTTCTGAGAAGAAAGCAAAGGAGTGGTGTACTTCTAAAGGGATACCTTACTTTGAGACATCAGCAAAAGAGGATATAAATGTTGATGCTGCATTCTTGTCTATTGCAAAAACTGCCTTGGCCAATGAGCACGAGCAGGATAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCCAAGGCATTCCAGAGGCAGTTTCAGAGACTGAACAAAGAGGTGGCTGTGCATGCTAAGGCGGATATAGTAATTCCATCGAGTGCCATACTTGATCCATGTTGTTGTGTATTATTTCTGCAACCGTATCATAACTCTCCGGCCATAGCCATTCTTTTGTACCCACTATTATATACTACTATTTGATTTCTTCAGTGTTGTTTTGGGAAGAGAAGCATCTTTTGTTACATTTCAGTTACTGGAAGGTAGAGAAACTCAGAAGGATTTCACTTAGTATTGCAGTTGGCTTTGACAGAGATTATAACTGTGCATCTTTTTTTATTTTCTCCATTGGGTGGTTGGTTTTATTGTATAATCTGAAAGAGCTGTATTTTTCTACATCTACGTATAAATAATGTGTTGGACTCGTAACTGCTACTGTGCTTCATTGCCATAAATTTTCGAAATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606112" ref_strand="+" ref_description="SGN-E606112 [22049]">
      <seq>tttttttttaaaatccaaccacccaatggagtaaaaaaaaaagaagcacagttacaatctttgtcaaagccaactgcaatactaagtgaaatcctcctgagtttgtctacctccagtatctgaaatgtaacaaaagatgtttctcttcccaaaacaacactgacgaaatcaaatagtagtatataatagtgggtacaaaagaatggctatggccggagagttatgatacggttgcaggaatattaggcaacaacatggatgtatggcactcgaattgctacatctgccttagcatgcacagccacctctttgctccgtctctgaaactgcctccggaatgccttggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="+" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="18487" stop="19435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18779" g_stop="19135" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="+" ref_id="SGN-E606112" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18779" e_stop="19135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATACAATAAAA-CCAACCACCCAATGGAGAAAATAAAAAAAGATGCACAGTTATAATCTCTGTCAAAGCCAACTGCAATACTAAGTGAAATCCTTCTGAGTTTCTCTACCTTCCAGTAACTGAAATGTAACAAAAGATGCTTCTCTTCCCAAAACAACACTGAAGAAATCAAATAGTAGTATATAATAGTGGGTACAAAAGAATGGCTATGGCCGGAGAGTTATGATACGGTTGCAGAAATAATACACAACAACATGGATCAAGTATGGCACTCGATGGAATTACTATATCCGCCTTAGCATGCACAGCCACCTCTTTGTTCAGTCTCTGAAACTGCCTCTGGAATGCCTTGGAAG</genome_strand>
        <mrna_strand>TTTTTTTTTAAAATCCAACCACCCAATGGAGTAAA-AAAAAAAGAAGCACAGTTACAATCTTTGTCAAAGCCAACTGCAATACTAAGTGAAATCCTCCTGAGTTTGTCTACC-TCCAGTATCTGAAATGTAACAAAAGATGTTTCTCTTCCCAAAACAACACTGACGAAATCAAATAGTAGTATATAATAGTGGGTACAAAAGAATGGCTATGGCCGGAGAGTTATGATACGGTTGCAGGAATATTAGGCAACAACATGGAT---GTATGGCACTC----GAATTGCTACATCTGCCTTAGCATGCACAGCCACCTCTTTGCTCCGTCTCTGAAACTGCCTCCGGAATGCCTTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234706" ref_strand="+" ref_description="SGN-E234706 [cLEL-6-E12](-)">
      <seq>aaaagaggatataaatgttaatgctgcattcttgtctattgcaaaaactgccttggccaatgagcacgagcaggatatatacttccaaggcattccagaggcagtttcagagactgaacaaagaggtggctgtgcatgctaaggcggatatagtaattccatcgagtgccatacttgatccatgttgttgtgtattatttctgcaaccgtatcataactctccggccatagccattcttttgtacccactattatatactactatttgatttcttcagtgttgttttgggaagagaagcatcttttgttacatttcagttactggaaggtagagaaactcagaaggatttcacttagtattgcagttggctttgccagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="27659" stop="18530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27359" g_stop="27282" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27281" i_stop="19139" i_length="8143">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19138" g_stop="18837" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="380" r_length="302" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="381" polyA_stop="408"/>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E234706" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27359" e_stop="27282"/>
          <exon e_start="19138" e_stop="18837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGGATATAAATGTTGATGCTGCATTCTTGTCTATTGCAAAAACTGCCTTGGCCAATGAGCACGAGCAGGATATGTGAGTTTTTGTGAATTTTCATGAATATAAACAACTCACTGTTGTTTGTTGCTTTTATTATTATGTGATATGGTGCTTACATACCTTGGAGCTTTGCATTAATAATAATATGAGCTAACTCAAGGGATGGGCTTGAAGGTGTTAAGTGAATTTATTCTAACATGTGACCACCCCTCGAATGTACAAGAATGTTTGCTAGTGGAGTACGATGAAACTAACATTAAGGGGATACTCGGGAGTTCAAAAATTTTTCTGGAACGGTGTGTGACAGAAGTCACTTGTCAGGATAATATTTTTCATGAGAGAGTCATTTTCTGATATTCAGTTGACAGAAACATATAATGGGCGAAAAATGACCTCCCTACGGTGGGAAGTGATCTACACTCAAACTATCTGGACTTTAAACTTCATATCACTTGCTTTAGCTAATACCTAGATACTGTTATTAATCTTAATACTCAAATCTCATCAAAACACTTACAAATTTACTAAGATTATTATTAATCTTTAATATGTTGTTTTCAAAATATACTTTTCACTCATCAATCAAACACTAGAATTTATTTTTCAAGATTAAGATTTTCCTTGGAAAATGACCTGTGTCATTTTAAACACACTTGAAACATTTGATTATTTTGGACAAGAAGATTGTTTGGTTTTGTTTTCTCAAAAAGTTTTTAGAAGAAAAAAGGCAAAACATATTAAATCATAAACCAAACAACAGGCTAAGAACTATTTTAGGTTCAAAATTCAAACAAACCATTGTAACTTTGAAATAACTATTCTTGCACGTTTTGTTTTTCTTTAATTCCATATAACATTTTGGGGGAGGTTCTCTAAAAACCATTCCAAGAAAAACTGCCCAAGGTTCATCTAAGAAACTCTCTTCTTGTTGCATGCATAAGATATCTCTTTAATCATAGAGATTCTCCTTACTTTCATATCTAGTTTATGATAACTATCACATGGAAATTATGCAGGAGAGAGTTATATTGAAGACTAGATAAGTAGACATTAGAATATTTCTTGTAAGGCTAGATTTTGAAGTCTAAAATCCATTAGTGGCAGAAAATGTGATAAGAAGACTGTGAAATCAGTGTTTGACTTACCATAAAGAAAGATAGAGTAGTAGTAATATAGTATTTTAGCATAGTTAGGAGTAGTTTTTGGGATGCTGCACTGCTGTATGTAATATGTAAGTTGTCATGAATAACCTTAGTCCATTAGATAAGCAGTATAGTATTTTATAGTTAACCCTTATCACCTTCTTGGTGCTGGTGTTATAGAAACAAATTACGTATGAAAATATACGCCAATATCAGGTGATTTATTTTCAGAACCATTTTGTGGCCCATCTCAGTTTTTCTTTTTGTGAAGACATTAAATCAGGGATAACATGAAATGAATCTTCACCACAGCATAGCAATGGTCTGCAAGAAAGTCTTTTCCAGTAGACCCAATTGATGATTAGGACTTCAAATCATGGAAAAACAGCATAAGGTGTTTATAGCATAAACATTGCCTTGGGAGGGATAACTAGGCAGGATAATACTTATCAGAGAAGTGTGTTTCTTGGGCTTTTTTTAGCGATATGTTTTGCAGACATTCTGATCTATTGCACTTATAGACGAAGAGCAAGACTGTACCATAGCTCTTGTGAAGGTTCCGACCTATCATGCTAGGGAGATGAATAAATCCTACTTAGGTGGTGAATCTGAAATAGTTCCGGCTCTTTGCGTCTTTGTCTCTGTGACTCCTTTTTATTTTGATTAGGTAAAGGTACTATTATTTAAACCGTACCAAGAGGGTTCCAGGGGAAGTACAAGAGGTCAGAATTTATGATTTCCTTATTGACTCAACGAGCCCAAAAATTGTGACATCTTCTCTAGAATGTAGCTTATACATCAAAAATATAGATTTTGTAGACAGTAAACTATACAAAGGAAATATGTTTATTCTTCCTTCCAAGCCTCTACTTTTTTTTCAGCCACACGGTCTAGTTTTCCAAAATTATGCACATAGGAATAGTCTTCCAAGCCTCTATGTATCTTTTGTCGTCCTTCTGCTCTTGCCAGCATATTAGGGTCTTCCTAACATCCGTGGCCTGCTTTACTCGAAACAGGTTTGTGAACAAAGGCCAAATGTGTCAGGTAAAGCTACAGAACAGAAATATATGGCTGCTGCTATCTAGGGAACTATTGCAAAGAAACACCTGTTACAGAGTGAAAGACGCCTTCTTGAGTAGGGACAAAACTGCCTGCTGTTTACTCATAGATCATTTGGTGCATTTGGCACAAAATTTGGTGAACTTTGATAGAATGAACACTATAGAAAATGAGTTCCTTTAACGGGCTACTGAATGTAAGATGGGTGTGAAAGAAGACATATTCCTAATTATGCATCAAAAGGTGTGGCAAAGTGGTCAATGAAGTGGTAGAACCATATAAGCTTAGCTCAAATCGCAACAGATATGTGCAAGCATTGGTGAATAGAGTTACCTTGTATCCGTGCTGGTGGGATGTAGCAGGTACCCCACGGAATTAGTCAAGGTGCAGGCAAGTTGACCTGGACACCACGGTTATTGATAATAGAAGAAATATTGCTGATTATTCAGCGGAAACAACATGATGGATTCATTCCTATTTGAGTTCTTTACATAAATGATGTAGGATGTAGAAAAACTTAGTTGATGTTATGGTGCAAGGAATATTCAAGTATTACCTGTTTAGAAGGTACTTTCTATTGGTTCTTGTATCTGAGGTAAATGTTGTGATAGCAAGTTGTTGATATGAGAGAAAGGCATCCTCCACTATGCTTGCAGGAACTATTCACATCAAATGGTGACTTTGTGTATAGTACTTAGTAGATCTTTGAAGAAATAACAAGTGTTGCTGTAGTTGAAGAACAAAAAGCAAGTCTCGTTGTTAGAATGTTTGTGGAATATTTACAAGAGCTGAGTTTTTAAGTTAGACAAGCAAAAGATCCATACAGGTACTAGCTAGTTAAAATTAATGTTAAATGTTTGTTGAAGAATTATGAGGATGCCAAAACCTTAAGGCAACAATGGAGTGACCTAGGAAACTCTGAAGCCCTTGGGTACACTTGTACAATCAATGAGGAAAAAGTGTCCTCTTAATACCGCCTTAGATGTGTAACCTGGTTCTACGGTTTACACGCATGGACTGAAAATTCTTGTTTTGTTTCTTTCAATTTGGGTATATTTAGTCTTTAGGATGAGGTTTGCTTACAACCCACCCTCCACAGACCTCACTCGTGGAACTATACTAGGTATGTTGTTATTTTTAGGGAGAGAGAGAGGAGGCTCAACATGAGTAGGTCAAGTAGGGAGAGTAGTGTGAAGATACGACTTTGGGTCTTGTGAAATTAGGTCTTATGCCTAATTCACATCCCAAAAGCTAGCTCAAAGGGAGAAGGATTGTCCAAGCCTTATAAGAATTCCACCCATCTCATTAACCACCGATGTGGGACTTTTGTCATTCTTTAACACCCAACCTCACGCCCAATGCTTAGCATCTGGTGCGTGAATAATTTCGATTTTTGGGACCCAACATCGAGTGAGACGGGCCCTACTCTGATAGGACCGAAATAAGCAGGTGTAAATGCGAAAGCTAGCAAAGCAAACCTCGAATGACTTGAGTAAGAACTAAGAAGACAAATGAGAAATACACCAAAAGAGATAGAAATTTAATGTGGTTCGGTTAATCGACCTATGTCTACAAAAGAACTGAGCAATCCACTATAAATATGAGAGTACAAAATATAGAGAAAAACAACCTTAACCAATTTCCTCAAAATACAAAGAGGGCTCAAAATTCTTCCCATGTAACAACTCTCAAAATCCTATGACTACATTGTGAATGCTAATTGAGTTAGAAAGAACAAACCTATATATTCATAGAGTGCTAAAACCTTTTCCTACCACAAAAAGACTACTCAAAATATTAAAACTTTTTTCTAAAAGGAATACTTATTTATATAAACCCCAATAATCTCCAATTTGGCCTGAATTTCTGACAAAATTATTTTGTCCACCTTCTTCACATGATCTTCAGGATCTTGCATCTTTTCTCCATAATCTCTTCCATCAAATCTATGTCTCGACACAGAGAACCTATTTGAAATAATTTCTCCAACATAGATCTTCATTACTATCAAAAAGGTTATGCGGTTAGTACTACACCTGCCAAGATGAACATCCAATTTTTAATTTGGTTCCATCAACAACCGTTGCACCTGGCTCTGATATAATGTGAAATTAGGTTTTAGGCCTAACTCACACCCCAAAAGCTTGCTCAAAGGGAGGAGGATTATCAAGCCTTATGAGGATCCACCCATCTCATTAACCACCAATGTGTGGGACTTTTGTCATTCTTTAACACCCAACCTTACGACCCTTCAAGGTGGCCAATGGTTTGAGCTTGGGACTTTCATGTTAGAGGTCTTAAGTTCAAAACTCCTTGCTAGCGAAAACAAGGGGTTTGCCTTTTGGGTCGAGCTCGTGCACCAGGTTTGCCTAGTGCGGGTTACCTCTCCTATGTAGTTTGCGAGCTATTGCATCGTAGCGGGGGTTTTACCTGTGCGCACCCAAAGGGTAGCGACTGTGGGTTTACTTGACATTAAAAAAAAACCCATCTTACGCCAATGCTTAGCATTTGATGCGTGGACAATTTTTGATTTTGTGGGCGTCAACATCGGGAGAGATGAGCCTTACTCTAATACCATGTGAAATCAGGTCTTAGGCCTAAATCACACCTCTAGAGCTATAACTTTTGAGGTGTGAGTTAGGACCAAGACCTAATTTCACAGGTCTAATTCGGCCTAAAGACTGGTTGAAGTGAGGATTGACCAAGTCCATATATGGAGACCACTAGCCCATTTTCCAAATAATGTGAAACTTCAAACCACTCTTGTATACCCCTGCACTCCCAAACCGCCAATTGGAGAATGTTGAAAATAATATTGGGGGCTCTAGTATAGATGGGCTTGGCTCTAGTACCATGTGGAGATATGACCCTCTGGCCTAACTCAACCTTTGAATATAGCTCTTTAGAGGAGAATTAGCCGAGTCTATATAAGAAGACCACTAGCCCATTCCCAACCAATGTTGGACTCTCACTTAGTCTAACAGGTTCAACAAGCTAACATTGGGTTGGAGCAATGTTAGTGATTCTATGGGCTGAATTTGTGAAAGAGAAGCATAGAGCAACTTCGTGGGCTGGGTTGAGAGAAAAAAAGCTTAAAGTGGCTCAATGGGACGAGTAAAGAGAAGCTCAGAGCATTACAGTAAGTAGAGAGAAGATAATTGTGCAAAAGGACTGACCAATGTATGGGTTCCATGGGAAAGGATCTGAGCTTCCAAACCAAAAGCTTAGTCGCTGAATTAAATACTTAGGCTGTCAGTAAAGCCCCTGCTTTTGTCACTTAAAGCAATGAGACGATGCGAAGCAACTGTTTATTGTTTCACAAGTAAAACAATGCACTTCAGAGAAGTGTGTGCTTAAATTTATGATGCACAAAGTTATCCAAATGAGAAGTGACATGCTCCTTGAGTCTCAATTTTGAGAAGTGACATGATCCTTGAGTCTCAATTTTGGATAGTTGGATTATATCCACATTATTGTATACGAGATGCTAAAGTTAGTTTTCTTGATTACATTTTGGTGATGCGTTTCACTTCTCACTTTTCAGTTCAAGTTCAATGAATCTTTCATATGATTGAATTTTTTGCTTTTAAAAACACCGAGTTCAAAGTATCATAAACCTCTTTGGAAACCCTTGTACAATCGACGACGATGAGATTGAAGGTCAAGTGTATTCTCCAAATTGTTTTTTGATAAATACTCTTTCTTTTTGATAAAATATACATTAGGCTTCGATAGGTATAAGTGTGAGAATTTGATGAATCTCTAATTTTAGGAAGTTCCTAATTTACCTAAAAGACAATTTTGCCCCTCTTCTTTCATCTATAAGTTTGTTCTTGGTTATACTGTAGGGCCAAATATTTCCACCGAAGTATGCAAAAATACCCCTCTTTTTAACGGTTGTCCACATACCTCAACGCCGCATGGCATGCCACCTCACCGCCAAATTTTCATTCTTTTTCCTTTTCTTTTCCTATTCCTTTTCTCTTTCTTACTTTTCTTCTTCACAAACTTTTTTCCCCTCTTTTTTCCAATGGCTTCCAGCAAATTCCCTTAGCTATACCTCAATAGCATCTTCCCCAATAACCCATAAAACTCACCAATTCCCTTTTTCCTCATTCATAAGAACCTCGTTCTCTCTGTAAACAAAAATCCATTAACCCAATAAATTAAAAATCAGGAAAAAAAAGAAAAGGAAGGTTCATTGATAGATACATATGCATCAAACACAACTATTATGAAATAAAATCTAAAAATGGTACAGCCCCCAGGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTAGCTTGGGTCACAGGTTCAAGCCCTACATCATGCAAAGTGAAGCCCGGTATTTAAGTGGAGAAGGGTAAAGTGGCGGGCCCATTGCCCACTGAGTTTAGAAGGCGGTAAGTGGTCCAAAGGGCGGGTCACAGATGGATTTCTCATTTATCAAGAAAATAATAAAATAAAATCTAAAAATGGTATCTTCAGGATAGGAATATTTCTAAAACTCCAAAACTCGTGTATATGGCAATGGAAGTATGAAGTTCAATTCTCTGAAAAATAGATATCAAAGAAAAATAAAATGAACACACAGATGGCCATCCTTATAGACGCTACAGAAAGAAATTTTCCTTTCATTTATGAGCAAAAGTAATGACTATTCGGGGGAAATGGTAATGGTGCTTTTACTGTTATTGGATATGGAAATTTGGTGAAGTATTGAAGAAGGGCTGTGGTGTTTTAGCCTTTAGGGAACAGAGATAAAATCGGAGCTCCAGGGAGAAGAAATAGAGCACCGAGGAAATGATGAGTTTCACGCGTTACTGGGAAAGATGCCATTGAGATATAGCTATAGGAAAGTGATGGATGCAATTGGAAAAAGAGAAGAAAAAAAGTTTGTGAAGAAGAAAGAGAAGGAAAAAAGAAAAAGAAGAAAAGGAAAAACAATTAAAATCTGGTGGTGAGGTGGCATCCACCTCACTCAAATGTCAGGCCATGTGGACAACCATTAAAAAGAGGGATATTTTTTCATACTTCGGTAACGGCAGAGACATATTTGTCCCTATAGTGTAACTAGTGAAAAACTTAACTAATAAATGAAAGTAGAGGGGTATTTTTGACCATTTCCCCAAGAATGAAATAGGGCTAACAAGTGGAATGAATGTAGAAGATACACATCAGCAATGCCTACTAATTTGGGATAAGGGTTATGTTGATTGATCGAGTGATATATTTCAGGACCTACTAGTTAGGGTAGAATGCTTTTGCAAAGGAGGTGCCGGTTGCAAAACAATAGTCTCATAAATGTTTTTTGATGTTTTCAAGCTTTATTTCTAGTTGAATGCTACAGTCCTTGAGTTAATGCTGATGAAAGCAACGGGGATATAAATCCATTTATCCGTTTTTTATCTGTAATGATCTTACATTATTTCTGTCTTTTTCTTGATCTTAGACAGGCATATGAACCTTATTCTACTAGATGAAGTGAAACACTTTTAGCCCTATTCAATTTGAAGTTTGTTAGCTTTTTTGAATCTTATTTTATCATGCATTTTGGTAAATTTTGAGAACTTGTTGTCTAGATTTTGATCTTGGGGTGACAGGTTGACTTTTGATGATTGACTCAAAAAGTAGGGTTGACAACTAGATATGCTCAACCGATTTTGTGTGTGACCTTATGTTGGTTTGGGAGGTCTAACTTAGTAGTGACTTTGTTTGGTGTCACTAATTTACCTGCCTAAAAATCTGATACTGTCTAATAGAGACGATCACGTGATATCTCAAGAGTTGATTATGCTGGCTCAACGGATTAGAAAGAAGTGAGGGAGCAGCATCAATTTTTTCATAGATAATAGTACATCTTAATGTTTTGTTTATGTTTAGCCTTTGTGGTATTCTGTGGGAGCTCAAATCTTAAGTAACTCTGACGTATGAACCGTATATACTGAACAGCATCTTTGTTCTGTTTTGCAGATACTTCCAAGGCATTCCAGAGGCAGTTTCAGAGACTGAACAAAGAGGTGGCTGTGCATGCTAAGGCGGATATAGTAATTCCATCGAGTGCCATACTTGATCCATGTTGTTGTGTATTATTTCTGCAACCGTATCATAACTCTCCGGCCATAGCCATTCTTTTGTACCCACTATTATATACTACTATTTGATTTCTTCAGTGTTGTTTTGGGAAGAGAAGCATCTTTTGTTACATTTCAGTTACTGGAAGGTAGAGAAACTCAGAAGGATTTCACTTAGTATTGCAGTTGGCTTTGACAGAG</genome_strand>
        <mrna_strand>AAAAGAGGATATAAATGTTAATGCTGCATTCTTGTCTATTGCAAAAACTGCCTTGGCCAATGAGCACGAGCAGGATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234994" ref_strand="+" ref_description="SGN-E234994 [cLEL-6-E12](-)">
      <seq>gcaaaaaactgccttggccaatgagcacgagcaggatatatacttccaaggcattccagaggcagtttcagagactgaacaaagaggtggctgtgcatgctaaggcggatatagtaattccatcgagtgccatacttgatccatgttgttgtgtattatttctgcaaccgtatcataactctccggccatagccattcttttgtaccccctattatatactactatttgatttcttcagtgttgttttgggaaaaaaagcatcttttgttacatttcagttactggaaggtagagaaactcagaaggatttcacttagtattgcagttggctttgccagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="27619" stop="18530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19374" g_stop="19335" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.575"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="19139" i_length="196">
            <donor d_prob="0.000" d_score="0.57"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19138" g_stop="18837" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="341" r_length="302" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="369"/>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E234994" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19374" e_stop="19335"/>
          <exon e_start="19138" e_stop="18837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAATCTGATACTGTCTAATAGAGACGATCACGTGATATCTCAAGAGTTGATTATGCTGGCTCAACGGATTAGAAAGAAGTGAGGGAGCAGCATCAATTTTTTCATAGATAATAGTACATCTTAATGTTTTGTTTATGTTTAGCCTTTGTGGTATTCTGTGGGAGCTCAAATCTTAAGTAACTCTGACGTATGAACCGTATATACTGAACAGCATCTTTGTTCTGTTTTGCAGATACTTCCAAGGCATTCCAGAGGCAGTTTCAGAGACTGAACAAAGAGGTGGCTGTGCATGCTAAGGCGGATATAGTAATTCCATCGAGTGCCATACTTGATCCATGTTGTTGTGTATTATTTCTGCAACCGTATCATAACTCTCCGGCCATAGCCATTCTTTTGTACCCACTATTATATACTACTATTTGATTTCTTCAGTGTTGTTTTGGGAAGAGAAGCATCTTTTGTTACATTTCAGTTACTGGAAGGTAGAGAAACTCAGAAGGATTTCACTTAGTATTGCAGTTGGCTTTGACAGAG</genome_strand>
        <mrna_strand>GCAAAAAACTG-CCTTGGCCAATGAGCACGAGCAGGATAT....................................................................................................................................................................................................ATACTTCCAAGGCATTCCAGAGGCAGTTTCAGAGACTGAACAAAGAGGTGGCTGTGCATGCTAAGGCGGATATAGTAATTCCATCGAGTGCCATACTTGATCCATGTTGTTGTGTATTATTTCTGCAACCGTATCATAACTCTCCGGCCATAGCCATTCTTTTGTACCCCCTATTATATACTACTATTTGATTTCTTCAGTGTTGTTTTGGGAAAAAAAGCATCTTTTGTTACATTTCAGTTACTGGAAGGTAGAGAAACTCAGAAGGATTTCACTTAGTATTGCAGTTGGCTTTGCCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588229" ref_strand="+" ref_description="SGN-E588229 [41777]">
      <seq>ttccagagtcttggggttgcattttatagaggtgcagattgctgtgttttggtctatgatgttaatgtgatgcgatcctttgataaccttgacaattggcatgaagaatttctcaaacaggctaatccgccagaccctaaaacatttcctttcatattactggggaacaagattgatatagatggtggaaatagccgagtggtttctgagaagaaagcaaaggagtggtgtacttcaaaagggataccttactttgagacatcagcaaaagaggatataaatgttgatgctgcattcttgtctattgcaaaaactgccttggccaatgagcacgagcaggatatctacttccaaggcattccggaggcagtttcagagacggagcaaagaggtggctgtgcatgctaaggcagatgtagcaattcgagtgccatacttaatccatgttgttgcctaatattcctgcaaccgtatcataactctccggccatagccattcttttgtacccactattatatactactatttgatttcttcagtgttgttttgggaaagagaaacatcttttgttacatttcagatactggaggtagacaaactcaggaggattccactttagtattgcagttggcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="28453" stop="18542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28153" g_stop="28034" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28033" i_stop="27656" i_length="378">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27655" g_stop="27575" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="201" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27574" i_stop="27425" i_length="150">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27424" g_stop="27282" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="344" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27281" i_stop="19139" i_length="8143">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19138" g_stop="18842" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="638" r_length="294" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E588229" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28153" e_stop="28034"/>
          <exon e_start="27655" e_stop="27575"/>
          <exon e_start="27424" e_stop="27282"/>
          <exon e_start="19138" e_stop="18842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGAGTCTTGGAGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAGGTTGGGTGATTATTCTCTGGGATTCGTTTGGTTCAGTAAATTTTTTTATTAAGTTGCTTAGGGTATCCTGATTGCTTAGTGTTTATACATTGCTATGAGTCGTGTTATCAACAAATTAGCAAATGCCTCTGAGACACTTAGTTAAACGCCTTTGAGACTAATTAATTCCTTCATTGTTTTCCTGTTTAAAGGTAAAAGATTTGGGATTACGTTGTGCATTTATAGAGTTTCACGTGTAAATTATGCATTCAAATCTTAATTGGACTACTTCTGTTATAACTTTGGAATGTACATCATTTCCTCATGCAAATATTGACTTATTGGTGTATTAAGATAAGTTGTGATCCATTTTAACCAACATAATTTATTGATATGCAGGCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAGATGGTGGAAATAGCCGAGTGGTAAGGCAATGATAGCGGTAGACTTTTCAAATTATGGTCTCTGGATTGTGTGTAACTCTTGCTCTTGATTGATCCTCTATGGAAGTTTCCTTTTCTTCAGTTCTCTCTCTGCAATAATTGTGACTGATTTGTCTTTTGCATGCTGAACAGGTTTCTGAGAAGAAAGCAAAGGAGTGGTGTACTTCTAAAGGGATACCTTACTTTGAGACATCAGCAAAAGAGGATATAAATGTTGATGCTGCATTCTTGTCTATTGCAAAAACTGCCTTGGCCAATGAGCACGAGCAGGATATGTGAGTTTTTGTGAATTTTCATGAATATAAACAACTCACTGTTGTTTGTTGCTTTTATTATTATGTGATATGGTGCTTACATACCTTGGAGCTTTGCATTAATAATAATATGAGCTAACTCAAGGGATGGGCTTGAAGGTGTTAAGTGAATTTATTCTAACATGTGACCACCCCTCGAATGTACAAGAATGTTTGCTAGTGGAGTACGATGAAACTAACATTAAGGGGATACTCGGGAGTTCAAAAATTTTTCTGGAACGGTGTGTGACAGAAGTCACTTGTCAGGATAATATTTTTCATGAGAGAGTCATTTTCTGATATTCAGTTGACAGAAACATATAATGGGCGAAAAATGACCTCCCTACGGTGGGAAGTGATCTACACTCAAACTATCTGGACTTTAAACTTCATATCACTTGCTTTAGCTAATACCTAGATACTGTTATTAATCTTAATACTCAAATCTCATCAAAACACTTACAAATTTACTAAGATTATTATTAATCTTTAATATGTTGTTTTCAAAATATACTTTTCACTCATCAATCAAACACTAGAATTTATTTTTCAAGATTAAGATTTTCCTTGGAAAATGACCTGTGTCATTTTAAACACACTTGAAACATTTGATTATTTTGGACAAGAAGATTGTTTGGTTTTGTTTTCTCAAAAAGTTTTTAGAAGAAAAAAGGCAAAACATATTAAATCATAAACCAAACAACAGGCTAAGAACTATTTTAGGTTCAAAATTCAAACAAACCATTGTAACTTTGAAATAACTATTCTTGCACGTTTTGTTTTTCTTTAATTCCATATAACATTTTGGGGGAGGTTCTCTAAAAACCATTCCAAGAAAAACTGCCCAAGGTTCATCTAAGAAACTCTCTTCTTGTTGCATGCATAAGATATCTCTTTAATCATAGAGATTCTCCTTACTTTCATATCTAGTTTATGATAACTATCACATGGAAATTATGCAGGAGAGAGTTATATTGAAGACTAGATAAGTAGACATTAGAATATTTCTTGTAAGGCTAGATTTTGAAGTCTAAAATCCATTAGTGGCAGAAAATGTGATAAGAAGACTGTGAAATCAGTGTTTGACTTACCATAAAGAAAGATAGAGTAGTAGTAATATAGTATTTTAGCATAGTTAGGAGTAGTTTTTGGGATGCTGCACTGCTGTATGTAATATGTAAGTTGTCATGAATAACCTTAGTCCATTAGATAAGCAGTATAGTATTTTATAGTTAACCCTTATCACCTTCTTGGTGCTGGTGTTATAGAAACAAATTACGTATGAAAATATACGCCAATATCAGGTGATTTATTTTCAGAACCATTTTGTGGCCCATCTCAGTTTTTCTTTTTGTGAAGACATTAAATCAGGGATAACATGAAATGAATCTTCACCACAGCATAGCAATGGTCTGCAAGAAAGTCTTTTCCAGTAGACCCAATTGATGATTAGGACTTCAAATCATGGAAAAACAGCATAAGGTGTTTATAGCATAAACATTGCCTTGGGAGGGATAACTAGGCAGGATAATACTTATCAGAGAAGTGTGTTTCTTGGGCTTTTTTTAGCGATATGTTTTGCAGACATTCTGATCTATTGCACTTATAGACGAAGAGCAAGACTGTACCATAGCTCTTGTGAAGGTTCCGACCTATCATGCTAGGGAGATGAATAAATCCTACTTAGGTGGTGAATCTGAAATAGTTCCGGCTCTTTGCGTCTTTGTCTCTGTGACTCCTTTTTATTTTGATTAGGTAAAGGTACTATTATTTAAACCGTACCAAGAGGGTTCCAGGGGAAGTACAAGAGGTCAGAATTTATGATTTCCTTATTGACTCAACGAGCCCAAAAATTGTGACATCTTCTCTAGAATGTAGCTTATACATCAAAAATATAGATTTTGTAGACAGTAAACTATACAAAGGAAATATGTTTATTCTTCCTTCCAAGCCTCTACTTTTTTTTCAGCCACACGGTCTAGTTTTCCAAAATTATGCACATAGGAATAGTCTTCCAAGCCTCTATGTATCTTTTGTCGTCCTTCTGCTCTTGCCAGCATATTAGGGTCTTCCTAACATCCGTGGCCTGCTTTACTCGAAACAGGTTTGTGAACAAAGGCCAAATGTGTCAGGTAAAGCTACAGAACAGAAATATATGGCTGCTGCTATCTAGGGAACTATTGCAAAGAAACACCTGTTACAGAGTGAAAGACGCCTTCTTGAGTAGGGACAAAACTGCCTGCTGTTTACTCATAGATCATTTGGTGCATTTGGCACAAAATTTGGTGAACTTTGATAGAATGAACACTATAGAAAATGAGTTCCTTTAACGGGCTACTGAATGTAAGATGGGTGTGAAAGAAGACATATTCCTAATTATGCATCAAAAGGTGTGGCAAAGTGGTCAATGAAGTGGTAGAACCATATAAGCTTAGCTCAAATCGCAACAGATATGTGCAAGCATTGGTGAATAGAGTTACCTTGTATCCGTGCTGGTGGGATGTAGCAGGTACCCCACGGAATTAGTCAAGGTGCAGGCAAGTTGACCTGGACACCACGGTTATTGATAATAGAAGAAATATTGCTGATTATTCAGCGGAAACAACATGATGGATTCATTCCTATTTGAGTTCTTTACATAAATGATGTAGGATGTAGAAAAACTTAGTTGATGTTATGGTGCAAGGAATATTCAAGTATTACCTGTTTAGAAGGTACTTTCTATTGGTTCTTGTATCTGAGGTAAATGTTGTGATAGCAAGTTGTTGATATGAGAGAAAGGCATCCTCCACTATGCTTGCAGGAACTATTCACATCAAATGGTGACTTTGTGTATAGTACTTAGTAGATCTTTGAAGAAATAACAAGTGTTGCTGTAGTTGAAGAACAAAAAGCAAGTCTCGTTGTTAGAATGTTTGTGGAATATTTACAAGAGCTGAGTTTTTAAGTTAGACAAGCAAAAGATCCATACAGGTACTAGCTAGTTAAAATTAATGTTAAATGTTTGTTGAAGAATTATGAGGATGCCAAAACCTTAAGGCAACAATGGAGTGACCTAGGAAACTCTGAAGCCCTTGGGTACACTTGTACAATCAATGAGGAAAAAGTGTCCTCTTAATACCGCCTTAGATGTGTAACCTGGTTCTACGGTTTACACGCATGGACTGAAAATTCTTGTTTTGTTTCTTTCAATTTGGGTATATTTAGTCTTTAGGATGAGGTTTGCTTACAACCCACCCTCCACAGACCTCACTCGTGGAACTATACTAGGTATGTTGTTATTTTTAGGGAGAGAGAGAGGAGGCTCAACATGAGTAGGTCAAGTAGGGAGAGTAGTGTGAAGATACGACTTTGGGTCTTGTGAAATTAGGTCTTATGCCTAATTCACATCCCAAAAGCTAGCTCAAAGGGAGAAGGATTGTCCAAGCCTTATAAGAATTCCACCCATCTCATTAACCACCGATGTGGGACTTTTGTCATTCTTTAACACCCAACCTCACGCCCAATGCTTAGCATCTGGTGCGTGAATAATTTCGATTTTTGGGACCCAACATCGAGTGAGACGGGCCCTACTCTGATAGGACCGAAATAAGCAGGTGTAAATGCGAAAGCTAGCAAAGCAAACCTCGAATGACTTGAGTAAGAACTAAGAAGACAAATGAGAAATACACCAAAAGAGATAGAAATTTAATGTGGTTCGGTTAATCGACCTATGTCTACAAAAGAACTGAGCAATCCACTATAAATATGAGAGTACAAAATATAGAGAAAAACAACCTTAACCAATTTCCTCAAAATACAAAGAGGGCTCAAAATTCTTCCCATGTAACAACTCTCAAAATCCTATGACTACATTGTGAATGCTAATTGAGTTAGAAAGAACAAACCTATATATTCATAGAGTGCTAAAACCTTTTCCTACCACAAAAAGACTACTCAAAATATTAAAACTTTTTTCTAAAAGGAATACTTATTTATATAAACCCCAATAATCTCCAATTTGGCCTGAATTTCTGACAAAATTATTTTGTCCACCTTCTTCACATGATCTTCAGGATCTTGCATCTTTTCTCCATAATCTCTTCCATCAAATCTATGTCTCGACACAGAGAACCTATTTGAAATAATTTCTCCAACATAGATCTTCATTACTATCAAAAAGGTTATGCGGTTAGTACTACACCTGCCAAGATGAACATCCAATTTTTAATTTGGTTCCATCAACAACCGTTGCACCTGGCTCTGATATAATGTGAAATTAGGTTTTAGGCCTAACTCACACCCCAAAAGCTTGCTCAAAGGGAGGAGGATTATCAAGCCTTATGAGGATCCACCCATCTCATTAACCACCAATGTGTGGGACTTTTGTCATTCTTTAACACCCAACCTTACGACCCTTCAAGGTGGCCAATGGTTTGAGCTTGGGACTTTCATGTTAGAGGTCTTAAGTTCAAAACTCCTTGCTAGCGAAAACAAGGGGTTTGCCTTTTGGGTCGAGCTCGTGCACCAGGTTTGCCTAGTGCGGGTTACCTCTCCTATGTAGTTTGCGAGCTATTGCATCGTAGCGGGGGTTTTACCTGTGCGCACCCAAAGGGTAGCGACTGTGGGTTTACTTGACATTAAAAAAAAACCCATCTTACGCCAATGCTTAGCATTTGATGCGTGGACAATTTTTGATTTTGTGGGCGTCAACATCGGGAGAGATGAGCCTTACTCTAATACCATGTGAAATCAGGTCTTAGGCCTAAATCACACCTCTAGAGCTATAACTTTTGAGGTGTGAGTTAGGACCAAGACCTAATTTCACAGGTCTAATTCGGCCTAAAGACTGGTTGAAGTGAGGATTGACCAAGTCCATATATGGAGACCACTAGCCCATTTTCCAAATAATGTGAAACTTCAAACCACTCTTGTATACCCCTGCACTCCCAAACCGCCAATTGGAGAATGTTGAAAATAATATTGGGGGCTCTAGTATAGATGGGCTTGGCTCTAGTACCATGTGGAGATATGACCCTCTGGCCTAACTCAACCTTTGAATATAGCTCTTTAGAGGAGAATTAGCCGAGTCTATATAAGAAGACCACTAGCCCATTCCCAACCAATGTTGGACTCTCACTTAGTCTAACAGGTTCAACAAGCTAACATTGGGTTGGAGCAATGTTAGTGATTCTATGGGCTGAATTTGTGAAAGAGAAGCATAGAGCAACTTCGTGGGCTGGGTTGAGAGAAAAAAAGCTTAAAGTGGCTCAATGGGACGAGTAAAGAGAAGCTCAGAGCATTACAGTAAGTAGAGAGAAGATAATTGTGCAAAAGGACTGACCAATGTATGGGTTCCATGGGAAAGGATCTGAGCTTCCAAACCAAAAGCTTAGTCGCTGAATTAAATACTTAGGCTGTCAGTAAAGCCCCTGCTTTTGTCACTTAAAGCAATGAGACGATGCGAAGCAACTGTTTATTGTTTCACAAGTAAAACAATGCACTTCAGAGAAGTGTGTGCTTAAATTTATGATGCACAAAGTTATCCAAATGAGAAGTGACATGCTCCTTGAGTCTCAATTTTGAGAAGTGACATGATCCTTGAGTCTCAATTTTGGATAGTTGGATTATATCCACATTATTGTATACGAGATGCTAAAGTTAGTTTTCTTGATTACATTTTGGTGATGCGTTTCACTTCTCACTTTTCAGTTCAAGTTCAATGAATCTTTCATATGATTGAATTTTTTGCTTTTAAAAACACCGAGTTCAAAGTATCATAAACCTCTTTGGAAACCCTTGTACAATCGACGACGATGAGATTGAAGGTCAAGTGTATTCTCCAAATTGTTTTTTGATAAATACTCTTTCTTTTTGATAAAATATACATTAGGCTTCGATAGGTATAAGTGTGAGAATTTGATGAATCTCTAATTTTAGGAAGTTCCTAATTTACCTAAAAGACAATTTTGCCCCTCTTCTTTCATCTATAAGTTTGTTCTTGGTTATACTGTAGGGCCAAATATTTCCACCGAAGTATGCAAAAATACCCCTCTTTTTAACGGTTGTCCACATACCTCAACGCCGCATGGCATGCCACCTCACCGCCAAATTTTCATTCTTTTTCCTTTTCTTTTCCTATTCCTTTTCTCTTTCTTACTTTTCTTCTTCACAAACTTTTTTCCCCTCTTTTTTCCAATGGCTTCCAGCAAATTCCCTTAGCTATACCTCAATAGCATCTTCCCCAATAACCCATAAAACTCACCAATTCCCTTTTTCCTCATTCATAAGAACCTCGTTCTCTCTGTAAACAAAAATCCATTAACCCAATAAATTAAAAATCAGGAAAAAAAAGAAAAGGAAGGTTCATTGATAGATACATATGCATCAAACACAACTATTATGAAATAAAATCTAAAAATGGTACAGCCCCCAGGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTAGCTTGGGTCACAGGTTCAAGCCCTACATCATGCAAAGTGAAGCCCGGTATTTAAGTGGAGAAGGGTAAAGTGGCGGGCCCATTGCCCACTGAGTTTAGAAGGCGGTAAGTGGTCCAAAGGGCGGGTCACAGATGGATTTCTCATTTATCAAGAAAATAATAAAATAAAATCTAAAAATGGTATCTTCAGGATAGGAATATTTCTAAAACTCCAAAACTCGTGTATATGGCAATGGAAGTATGAAGTTCAATTCTCTGAAAAATAGATATCAAAGAAAAATAAAATGAACACACAGATGGCCATCCTTATAGACGCTACAGAAAGAAATTTTCCTTTCATTTATGAGCAAAAGTAATGACTATTCGGGGGAAATGGTAATGGTGCTTTTACTGTTATTGGATATGGAAATTTGGTGAAGTATTGAAGAAGGGCTGTGGTGTTTTAGCCTTTAGGGAACAGAGATAAAATCGGAGCTCCAGGGAGAAGAAATAGAGCACCGAGGAAATGATGAGTTTCACGCGTTACTGGGAAAGATGCCATTGAGATATAGCTATAGGAAAGTGATGGATGCAATTGGAAAAAGAGAAGAAAAAAAGTTTGTGAAGAAGAAAGAGAAGGAAAAAAGAAAAAGAAGAAAAGGAAAAACAATTAAAATCTGGTGGTGAGGTGGCATCCACCTCACTCAAATGTCAGGCCATGTGGACAACCATTAAAAAGAGGGATATTTTTTCATACTTCGGTAACGGCAGAGACATATTTGTCCCTATAGTGTAACTAGTGAAAAACTTAACTAATAAATGAAAGTAGAGGGGTATTTTTGACCATTTCCCCAAGAATGAAATAGGGCTAACAAGTGGAATGAATGTAGAAGATACACATCAGCAATGCCTACTAATTTGGGATAAGGGTTATGTTGATTGATCGAGTGATATATTTCAGGACCTACTAGTTAGGGTAGAATGCTTTTGCAAAGGAGGTGCCGGTTGCAAAACAATAGTCTCATAAATGTTTTTTGATGTTTTCAAGCTTTATTTCTAGTTGAATGCTACAGTCCTTGAGTTAATGCTGATGAAAGCAACGGGGATATAAATCCATTTATCCGTTTTTTATCTGTAATGATCTTACATTATTTCTGTCTTTTTCTTGATCTTAGACAGGCATATGAACCTTATTCTACTAGATGAAGTGAAACACTTTTAGCCCTATTCAATTTGAAGTTTGTTAGCTTTTTTGAATCTTATTTTATCATGCATTTTGGTAAATTTTGAGAACTTGTTGTCTAGATTTTGATCTTGGGGTGACAGGTTGACTTTTGATGATTGACTCAAAAAGTAGGGTTGACAACTAGATATGCTCAACCGATTTTGTGTGTGACCTTATGTTGGTTTGGGAGGTCTAACTTAGTAGTGACTTTGTTTGGTGTCACTAATTTACCTGCCTAAAAATCTGATACTGTCTAATAGAGACGATCACGTGATATCTCAAGAGTTGATTATGCTGGCTCAACGGATTAGAAAGAAGTGAGGGAGCAGCATCAATTTTTTCATAGATAATAGTACATCTTAATGTTTTGTTTATGTTTAGCCTTTGTGGTATTCTGTGGGAGCTCAAATCTTAAGTAACTCTGACGTATGAACCGTATATACTGAACAGCATCTTTGTTCTGTTTTGCAGATACTTCCAAGGCATTCCAGAGGCAGTTTCAGAGACTGAACAAAGAGGTGGCTGTGCATGCTAAGGCGGATATAGTAATTCCATCGAGTGCCATACTTGATCCATGTTGTTGTGTATTATTTCTGCAACCGTATCATAACTCTCCGGCCATAGCCATTCTTTTGTACCCACTATTATATACTACTATTTGATTTCTTCAGTGTTGTTTTGGG-AAGAGAAGCATCTTTTGTTACATTTCAGTTACTGGAAGGTAGAGAAACTCAGAAGGATTTCAC-TTAGTATTGCAGTTGGCTTTGA</genome_strand>
        <mrna_strand>TTCCAGAGTCTTGGGGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTGATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................GCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAGATGGTGGAAATAGCCGAGTG......................................................................................................................................................GTTTCTGAGAAGAAAGCAAAGGAGTGGTGTACTTCAAAAGGGATACCTTACTTTGAGACATCAGCAAAAGAGGATATAAATGTTGATGCTGCATTCTTGTCTATTGCAAAAACTGCCTTGGCCAATGAGCACGAGCAGGATAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603792" ref_strand="-" ref_description="SGN-E603792 [56890]">
      <seq>cgatcctttgataaccttgacaattggcatgaagaatttctcaaacaggctaatccgccagaccctaaaacatttcctttcatattactggggaacaagattgatatagatggtggaaatagccgagtggtttctgagaagaaagcaaaggagtggtgtacttcaaaagggataccttactttgagacatcagcaaaagaggatataaatgttgatgctgcattcttgtctattgcaaaaactgccttggccaatgagcacgagcaggatatatacttccaaggcattccggaggcagtttcagagacggagcaaagaggtggctgtgcatgctaaggcagatgtagcaattcgagtgccatacatccatgttgttgcctaatattcctgcaaccgtatcataactctccggccatagccattcttttgtacccactattatatactactatttgatttcgtcagtgttgttttgggaagagaaacatcttttgttacatttcagatactggaggtagacaaactcaggaggatttcacttagtattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="28381" stop="18554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28081" g_stop="28034" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28033" i_stop="27656" i_length="378">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27655" g_stop="27575" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="129" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27574" i_stop="27425" i_length="150">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27424" g_stop="27282" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="272" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27281" i_stop="19139" i_length="8143">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19138" g_stop="18854" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="549" r_length="277" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E603792" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E603792" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28081" e_stop="28034"/>
          <exon e_start="27655" e_stop="27575"/>
          <exon e_start="27424" e_stop="27282"/>
          <exon e_start="19138" e_stop="18854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAGGTTGGGTGATTATTCTCTGGGATTCGTTTGGTTCAGTAAATTTTTTTATTAAGTTGCTTAGGGTATCCTGATTGCTTAGTGTTTATACATTGCTATGAGTCGTGTTATCAACAAATTAGCAAATGCCTCTGAGACACTTAGTTAAACGCCTTTGAGACTAATTAATTCCTTCATTGTTTTCCTGTTTAAAGGTAAAAGATTTGGGATTACGTTGTGCATTTATAGAGTTTCACGTGTAAATTATGCATTCAAATCTTAATTGGACTACTTCTGTTATAACTTTGGAATGTACATCATTTCCTCATGCAAATATTGACTTATTGGTGTATTAAGATAAGTTGTGATCCATTTTAACCAACATAATTTATTGATATGCAGGCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAGATGGTGGAAATAGCCGAGTGGTAAGGCAATGATAGCGGTAGACTTTTCAAATTATGGTCTCTGGATTGTGTGTAACTCTTGCTCTTGATTGATCCTCTATGGAAGTTTCCTTTTCTTCAGTTCTCTCTCTGCAATAATTGTGACTGATTTGTCTTTTGCATGCTGAACAGGTTTCTGAGAAGAAAGCAAAGGAGTGGTGTACTTCTAAAGGGATACCTTACTTTGAGACATCAGCAAAAGAGGATATAAATGTTGATGCTGCATTCTTGTCTATTGCAAAAACTGCCTTGGCCAATGAGCACGAGCAGGATATGTGAGTTTTTGTGAATTTTCATGAATATAAACAACTCACTGTTGTTTGTTGCTTTTATTATTATGTGATATGGTGCTTACATACCTTGGAGCTTTGCATTAATAATAATATGAGCTAACTCAAGGGATGGGCTTGAAGGTGTTAAGTGAATTTATTCTAACATGTGACCACCCCTCGAATGTACAAGAATGTTTGCTAGTGGAGTACGATGAAACTAACATTAAGGGGATACTCGGGAGTTCAAAAATTTTTCTGGAACGGTGTGTGACAGAAGTCACTTGTCAGGATAATATTTTTCATGAGAGAGTCATTTTCTGATATTCAGTTGACAGAAACATATAATGGGCGAAAAATGACCTCCCTACGGTGGGAAGTGATCTACACTCAAACTATCTGGACTTTAAACTTCATATCACTTGCTTTAGCTAATACCTAGATACTGTTATTAATCTTAATACTCAAATCTCATCAAAACACTTACAAATTTACTAAGATTATTATTAATCTTTAATATGTTGTTTTCAAAATATACTTTTCACTCATCAATCAAACACTAGAATTTATTTTTCAAGATTAAGATTTTCCTTGGAAAATGACCTGTGTCATTTTAAACACACTTGAAACATTTGATTATTTTGGACAAGAAGATTGTTTGGTTTTGTTTTCTCAAAAAGTTTTTAGAAGAAAAAAGGCAAAACATATTAAATCATAAACCAAACAACAGGCTAAGAACTATTTTAGGTTCAAAATTCAAACAAACCATTGTAACTTTGAAATAACTATTCTTGCACGTTTTGTTTTTCTTTAATTCCATATAACATTTTGGGGGAGGTTCTCTAAAAACCATTCCAAGAAAAACTGCCCAAGGTTCATCTAAGAAACTCTCTTCTTGTTGCATGCATAAGATATCTCTTTAATCATAGAGATTCTCCTTACTTTCATATCTAGTTTATGATAACTATCACATGGAAATTATGCAGGAGAGAGTTATATTGAAGACTAGATAAGTAGACATTAGAATATTTCTTGTAAGGCTAGATTTTGAAGTCTAAAATCCATTAGTGGCAGAAAATGTGATAAGAAGACTGTGAAATCAGTGTTTGACTTACCATAAAGAAAGATAGAGTAGTAGTAATATAGTATTTTAGCATAGTTAGGAGTAGTTTTTGGGATGCTGCACTGCTGTATGTAATATGTAAGTTGTCATGAATAACCTTAGTCCATTAGATAAGCAGTATAGTATTTTATAGTTAACCCTTATCACCTTCTTGGTGCTGGTGTTATAGAAACAAATTACGTATGAAAATATACGCCAATATCAGGTGATTTATTTTCAGAACCATTTTGTGGCCCATCTCAGTTTTTCTTTTTGTGAAGACATTAAATCAGGGATAACATGAAATGAATCTTCACCACAGCATAGCAATGGTCTGCAAGAAAGTCTTTTCCAGTAGACCCAATTGATGATTAGGACTTCAAATCATGGAAAAACAGCATAAGGTGTTTATAGCATAAACATTGCCTTGGGAGGGATAACTAGGCAGGATAATACTTATCAGAGAAGTGTGTTTCTTGGGCTTTTTTTAGCGATATGTTTTGCAGACATTCTGATCTATTGCACTTATAGACGAAGAGCAAGACTGTACCATAGCTCTTGTGAAGGTTCCGACCTATCATGCTAGGGAGATGAATAAATCCTACTTAGGTGGTGAATCTGAAATAGTTCCGGCTCTTTGCGTCTTTGTCTCTGTGACTCCTTTTTATTTTGATTAGGTAAAGGTACTATTATTTAAACCGTACCAAGAGGGTTCCAGGGGAAGTACAAGAGGTCAGAATTTATGATTTCCTTATTGACTCAACGAGCCCAAAAATTGTGACATCTTCTCTAGAATGTAGCTTATACATCAAAAATATAGATTTTGTAGACAGTAAACTATACAAAGGAAATATGTTTATTCTTCCTTCCAAGCCTCTACTTTTTTTTCAGCCACACGGTCTAGTTTTCCAAAATTATGCACATAGGAATAGTCTTCCAAGCCTCTATGTATCTTTTGTCGTCCTTCTGCTCTTGCCAGCATATTAGGGTCTTCCTAACATCCGTGGCCTGCTTTACTCGAAACAGGTTTGTGAACAAAGGCCAAATGTGTCAGGTAAAGCTACAGAACAGAAATATATGGCTGCTGCTATCTAGGGAACTATTGCAAAGAAACACCTGTTACAGAGTGAAAGACGCCTTCTTGAGTAGGGACAAAACTGCCTGCTGTTTACTCATAGATCATTTGGTGCATTTGGCACAAAATTTGGTGAACTTTGATAGAATGAACACTATAGAAAATGAGTTCCTTTAACGGGCTACTGAATGTAAGATGGGTGTGAAAGAAGACATATTCCTAATTATGCATCAAAAGGTGTGGCAAAGTGGTCAATGAAGTGGTAGAACCATATAAGCTTAGCTCAAATCGCAACAGATATGTGCAAGCATTGGTGAATAGAGTTACCTTGTATCCGTGCTGGTGGGATGTAGCAGGTACCCCACGGAATTAGTCAAGGTGCAGGCAAGTTGACCTGGACACCACGGTTATTGATAATAGAAGAAATATTGCTGATTATTCAGCGGAAACAACATGATGGATTCATTCCTATTTGAGTTCTTTACATAAATGATGTAGGATGTAGAAAAACTTAGTTGATGTTATGGTGCAAGGAATATTCAAGTATTACCTGTTTAGAAGGTACTTTCTATTGGTTCTTGTATCTGAGGTAAATGTTGTGATAGCAAGTTGTTGATATGAGAGAAAGGCATCCTCCACTATGCTTGCAGGAACTATTCACATCAAATGGTGACTTTGTGTATAGTACTTAGTAGATCTTTGAAGAAATAACAAGTGTTGCTGTAGTTGAAGAACAAAAAGCAAGTCTCGTTGTTAGAATGTTTGTGGAATATTTACAAGAGCTGAGTTTTTAAGTTAGACAAGCAAAAGATCCATACAGGTACTAGCTAGTTAAAATTAATGTTAAATGTTTGTTGAAGAATTATGAGGATGCCAAAACCTTAAGGCAACAATGGAGTGACCTAGGAAACTCTGAAGCCCTTGGGTACACTTGTACAATCAATGAGGAAAAAGTGTCCTCTTAATACCGCCTTAGATGTGTAACCTGGTTCTACGGTTTACACGCATGGACTGAAAATTCTTGTTTTGTTTCTTTCAATTTGGGTATATTTAGTCTTTAGGATGAGGTTTGCTTACAACCCACCCTCCACAGACCTCACTCGTGGAACTATACTAGGTATGTTGTTATTTTTAGGGAGAGAGAGAGGAGGCTCAACATGAGTAGGTCAAGTAGGGAGAGTAGTGTGAAGATACGACTTTGGGTCTTGTGAAATTAGGTCTTATGCCTAATTCACATCCCAAAAGCTAGCTCAAAGGGAGAAGGATTGTCCAAGCCTTATAAGAATTCCACCCATCTCATTAACCACCGATGTGGGACTTTTGTCATTCTTTAACACCCAACCTCACGCCCAATGCTTAGCATCTGGTGCGTGAATAATTTCGATTTTTGGGACCCAACATCGAGTGAGACGGGCCCTACTCTGATAGGACCGAAATAAGCAGGTGTAAATGCGAAAGCTAGCAAAGCAAACCTCGAATGACTTGAGTAAGAACTAAGAAGACAAATGAGAAATACACCAAAAGAGATAGAAATTTAATGTGGTTCGGTTAATCGACCTATGTCTACAAAAGAACTGAGCAATCCACTATAAATATGAGAGTACAAAATATAGAGAAAAACAACCTTAACCAATTTCCTCAAAATACAAAGAGGGCTCAAAATTCTTCCCATGTAACAACTCTCAAAATCCTATGACTACATTGTGAATGCTAATTGAGTTAGAAAGAACAAACCTATATATTCATAGAGTGCTAAAACCTTTTCCTACCACAAAAAGACTACTCAAAATATTAAAACTTTTTTCTAAAAGGAATACTTATTTATATAAACCCCAATAATCTCCAATTTGGCCTGAATTTCTGACAAAATTATTTTGTCCACCTTCTTCACATGATCTTCAGGATCTTGCATCTTTTCTCCATAATCTCTTCCATCAAATCTATGTCTCGACACAGAGAACCTATTTGAAATAATTTCTCCAACATAGATCTTCATTACTATCAAAAAGGTTATGCGGTTAGTACTACACCTGCCAAGATGAACATCCAATTTTTAATTTGGTTCCATCAACAACCGTTGCACCTGGCTCTGATATAATGTGAAATTAGGTTTTAGGCCTAACTCACACCCCAAAAGCTTGCTCAAAGGGAGGAGGATTATCAAGCCTTATGAGGATCCACCCATCTCATTAACCACCAATGTGTGGGACTTTTGTCATTCTTTAACACCCAACCTTACGACCCTTCAAGGTGGCCAATGGTTTGAGCTTGGGACTTTCATGTTAGAGGTCTTAAGTTCAAAACTCCTTGCTAGCGAAAACAAGGGGTTTGCCTTTTGGGTCGAGCTCGTGCACCAGGTTTGCCTAGTGCGGGTTACCTCTCCTATGTAGTTTGCGAGCTATTGCATCGTAGCGGGGGTTTTACCTGTGCGCACCCAAAGGGTAGCGACTGTGGGTTTACTTGACATTAAAAAAAAACCCATCTTACGCCAATGCTTAGCATTTGATGCGTGGACAATTTTTGATTTTGTGGGCGTCAACATCGGGAGAGATGAGCCTTACTCTAATACCATGTGAAATCAGGTCTTAGGCCTAAATCACACCTCTAGAGCTATAACTTTTGAGGTGTGAGTTAGGACCAAGACCTAATTTCACAGGTCTAATTCGGCCTAAAGACTGGTTGAAGTGAGGATTGACCAAGTCCATATATGGAGACCACTAGCCCATTTTCCAAATAATGTGAAACTTCAAACCACTCTTGTATACCCCTGCACTCCCAAACCGCCAATTGGAGAATGTTGAAAATAATATTGGGGGCTCTAGTATAGATGGGCTTGGCTCTAGTACCATGTGGAGATATGACCCTCTGGCCTAACTCAACCTTTGAATATAGCTCTTTAGAGGAGAATTAGCCGAGTCTATATAAGAAGACCACTAGCCCATTCCCAACCAATGTTGGACTCTCACTTAGTCTAACAGGTTCAACAAGCTAACATTGGGTTGGAGCAATGTTAGTGATTCTATGGGCTGAATTTGTGAAAGAGAAGCATAGAGCAACTTCGTGGGCTGGGTTGAGAGAAAAAAAGCTTAAAGTGGCTCAATGGGACGAGTAAAGAGAAGCTCAGAGCATTACAGTAAGTAGAGAGAAGATAATTGTGCAAAAGGACTGACCAATGTATGGGTTCCATGGGAAAGGATCTGAGCTTCCAAACCAAAAGCTTAGTCGCTGAATTAAATACTTAGGCTGTCAGTAAAGCCCCTGCTTTTGTCACTTAAAGCAATGAGACGATGCGAAGCAACTGTTTATTGTTTCACAAGTAAAACAATGCACTTCAGAGAAGTGTGTGCTTAAATTTATGATGCACAAAGTTATCCAAATGAGAAGTGACATGCTCCTTGAGTCTCAATTTTGAGAAGTGACATGATCCTTGAGTCTCAATTTTGGATAGTTGGATTATATCCACATTATTGTATACGAGATGCTAAAGTTAGTTTTCTTGATTACATTTTGGTGATGCGTTTCACTTCTCACTTTTCAGTTCAAGTTCAATGAATCTTTCATATGATTGAATTTTTTGCTTTTAAAAACACCGAGTTCAAAGTATCATAAACCTCTTTGGAAACCCTTGTACAATCGACGACGATGAGATTGAAGGTCAAGTGTATTCTCCAAATTGTTTTTTGATAAATACTCTTTCTTTTTGATAAAATATACATTAGGCTTCGATAGGTATAAGTGTGAGAATTTGATGAATCTCTAATTTTAGGAAGTTCCTAATTTACCTAAAAGACAATTTTGCCCCTCTTCTTTCATCTATAAGTTTGTTCTTGGTTATACTGTAGGGCCAAATATTTCCACCGAAGTATGCAAAAATACCCCTCTTTTTAACGGTTGTCCACATACCTCAACGCCGCATGGCATGCCACCTCACCGCCAAATTTTCATTCTTTTTCCTTTTCTTTTCCTATTCCTTTTCTCTTTCTTACTTTTCTTCTTCACAAACTTTTTTCCCCTCTTTTTTCCAATGGCTTCCAGCAAATTCCCTTAGCTATACCTCAATAGCATCTTCCCCAATAACCCATAAAACTCACCAATTCCCTTTTTCCTCATTCATAAGAACCTCGTTCTCTCTGTAAACAAAAATCCATTAACCCAATAAATTAAAAATCAGGAAAAAAAAGAAAAGGAAGGTTCATTGATAGATACATATGCATCAAACACAACTATTATGAAATAAAATCTAAAAATGGTACAGCCCCCAGGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTAGCTTGGGTCACAGGTTCAAGCCCTACATCATGCAAAGTGAAGCCCGGTATTTAAGTGGAGAAGGGTAAAGTGGCGGGCCCATTGCCCACTGAGTTTAGAAGGCGGTAAGTGGTCCAAAGGGCGGGTCACAGATGGATTTCTCATTTATCAAGAAAATAATAAAATAAAATCTAAAAATGGTATCTTCAGGATAGGAATATTTCTAAAACTCCAAAACTCGTGTATATGGCAATGGAAGTATGAAGTTCAATTCTCTGAAAAATAGATATCAAAGAAAAATAAAATGAACACACAGATGGCCATCCTTATAGACGCTACAGAAAGAAATTTTCCTTTCATTTATGAGCAAAAGTAATGACTATTCGGGGGAAATGGTAATGGTGCTTTTACTGTTATTGGATATGGAAATTTGGTGAAGTATTGAAGAAGGGCTGTGGTGTTTTAGCCTTTAGGGAACAGAGATAAAATCGGAGCTCCAGGGAGAAGAAATAGAGCACCGAGGAAATGATGAGTTTCACGCGTTACTGGGAAAGATGCCATTGAGATATAGCTATAGGAAAGTGATGGATGCAATTGGAAAAAGAGAAGAAAAAAAGTTTGTGAAGAAGAAAGAGAAGGAAAAAAGAAAAAGAAGAAAAGGAAAAACAATTAAAATCTGGTGGTGAGGTGGCATCCACCTCACTCAAATGTCAGGCCATGTGGACAACCATTAAAAAGAGGGATATTTTTTCATACTTCGGTAACGGCAGAGACATATTTGTCCCTATAGTGTAACTAGTGAAAAACTTAACTAATAAATGAAAGTAGAGGGGTATTTTTGACCATTTCCCCAAGAATGAAATAGGGCTAACAAGTGGAATGAATGTAGAAGATACACATCAGCAATGCCTACTAATTTGGGATAAGGGTTATGTTGATTGATCGAGTGATATATTTCAGGACCTACTAGTTAGGGTAGAATGCTTTTGCAAAGGAGGTGCCGGTTGCAAAACAATAGTCTCATAAATGTTTTTTGATGTTTTCAAGCTTTATTTCTAGTTGAATGCTACAGTCCTTGAGTTAATGCTGATGAAAGCAACGGGGATATAAATCCATTTATCCGTTTTTTATCTGTAATGATCTTACATTATTTCTGTCTTTTTCTTGATCTTAGACAGGCATATGAACCTTATTCTACTAGATGAAGTGAAACACTTTTAGCCCTATTCAATTTGAAGTTTGTTAGCTTTTTTGAATCTTATTTTATCATGCATTTTGGTAAATTTTGAGAACTTGTTGTCTAGATTTTGATCTTGGGGTGACAGGTTGACTTTTGATGATTGACTCAAAAAGTAGGGTTGACAACTAGATATGCTCAACCGATTTTGTGTGTGACCTTATGTTGGTTTGGGAGGTCTAACTTAGTAGTGACTTTGTTTGGTGTCACTAATTTACCTGCCTAAAAATCTGATACTGTCTAATAGAGACGATCACGTGATATCTCAAGAGTTGATTATGCTGGCTCAACGGATTAGAAAGAAGTGAGGGAGCAGCATCAATTTTTTCATAGATAATAGTACATCTTAATGTTTTGTTTATGTTTAGCCTTTGTGGTATTCTGTGGGAGCTCAAATCTTAAGTAACTCTGACGTATGAACCGTATATACTGAACAGCATCTTTGTTCTGTTTTGCAGATACTTCCAAGGCATTCCAGAGGCAGTTTCAGAGACTGAACAAAGAGGTGGCTGTGCATGCTAAGGCGGATATAGTAATTCCATCGAGTGCCATACTTGATCCATGTTGTTGTGTATTATTTCTGCAACCGTATCATAACTCTCCGGCCATAGCCATTCTTTTGTACCCACTATTATATACTACTATTTGATTTCTTCAGTGTTGTTTTGGGAAGAGAAGCATCTTTTGTTACATTTCAGTTACTGGAAGGTAGAGAAACTCAGAAGGATTTCACTTAGTATTGC</genome_strand>
        <mrna_strand>CGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................GCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAGATGGTGGAAATAGCCGAGTG......................................................................................................................................................GTTTCTGAGAAGAAAGCAAAGGAGTGGTGTACTTCAAAAGGGATACCTTACTTTGAGACATCAGCAAAAGAGGATATAAATGTTGATGCTGCATTCTTGTCTATTGCAAAAACTGCCTTGGCCAATGAGCACGAGCAGGATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539012" ref_strand="+" ref_description="SGN-E539012 [TUS-58-I20]">
      <seq>gccgcttttctctggtttctctttctctctctaaatcccctttcttctctcttctgaaaattgtcaacccagatttgaaattcccaaattccatatacagggttcacttttgatttctctttcgccatgtctattcgtagaagaaccttgcttaaagttatcgtccttggcgatagtggggttggtaaaacgtcattaatgaatcaatatgtacacaagaagttcagtcagcaatataaagctacaattggagctgatttcgtgacaaaggagcttcaaattgatgacaggcttgttacactccaaatatgggatacggccggtcaagagagattccagagtcttggagttgcattttatagaggtgcagattgctgtgttttggtctatgatgttaatgtaatgcgatcctttgataaccttgacaattggcatgaagaatttctcaaacaggctaatccgccagaccctaaaacatttcctttcatattactggggaacaagattgatatagatggtggaaatagccgagtggtttctgagaagaaagcaaaggagtggtgtacttctaaagggataccttactttgagacatcagcaaaagaggatataaatgttgatgctgcattcttgtctattgcaaaaactgccttggccaatgagcacgagcaggatatatacttccaaggcattccagaagcagtttcagagactgaaacaagaagtggctgtgcatgctaaggcggatatagtaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="29284" stop="18757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28984" g_stop="28805" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28804" i_stop="28656" i_length="149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28655" g_stop="28629" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="206" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28628" i_stop="28366" i_length="263">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28365" g_stop="28266" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="306" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28265" i_stop="28181" i_length="85">
            <donor d_prob="0.423" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28180" g_stop="28034" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="453" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28033" i_stop="27656" i_length="378">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27655" g_stop="27575" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="534" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27574" i_stop="27425" i_length="150">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27424" g_stop="27282" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="677" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27281" i_stop="19139" i_length="8143">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19138" g_stop="19057" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="759" r_length="82" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E539012" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28984" e_stop="28805"/>
          <exon e_start="28655" e_stop="28629"/>
          <exon e_start="28365" e_stop="28266"/>
          <exon e_start="28180" e_stop="28034"/>
          <exon e_start="27655" e_stop="27575"/>
          <exon e_start="27424" e_stop="27282"/>
          <exon e_start="19138" e_stop="19057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCTTTTCTCTGGTTTCTCTTTCTCTCTCTACAATCCCCTTTCTTCTCTCTTCTGAAAATTGTCAACCCAGATTTGAAATTCCCAAATTCCATATACAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGGGTACGATCCCTTTTCCTCTTCTCAATCCTCATTTCCGATTTTTTTATTTTTTATTTTTACAAATTTCTGATCTCCGGCTAGTCATTAGGAAATTAATTGGAGTATATAGTGCTAATATAATTTCTCCTTTTTTTTTTTTTGGTTTACAGGGTTGGTAAAACGTCATTAATGAATCAGTATCCTTTTCTACGACATTGCTAATTGTTTGAGGTCAAGTTTAATTTTTTGTTGAAAATATGAATTGGGTTTTATGAGTATTTCAGTTTCGTGTTGGTAGTTTTCAGAATTTAGTTAACTTATGAGTATCTATTTTGATTTTTTTGTTTTGGGTTCTGTGTATTTGTTATGGATTATTACAGTTTAAGACCGCATTGTTTTTTTTTTAAAAAAATTTATAATTGAAGTAGTTGGAAATGTGGGTCTTTGACGGTTAGCAAAGATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACAAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAAGTGGGTTTCTTGGCTATTGATATTGTGAAAAATGTTTTATGGAATTATGCGTTTACGCGAATGTGTTTGTGTTCTGGTTTGGTAGATATGGGATACGGCCGGTCAAGAGAGATTCCAGAGTCTTGGAGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAGGTTGGGTGATTATTCTCTGGGATTCGTTTGGTTCAGTAAATTTTTTTATTAAGTTGCTTAGGGTATCCTGATTGCTTAGTGTTTATACATTGCTATGAGTCGTGTTATCAACAAATTAGCAAATGCCTCTGAGACACTTAGTTAAACGCCTTTGAGACTAATTAATTCCTTCATTGTTTTCCTGTTTAAAGGTAAAAGATTTGGGATTACGTTGTGCATTTATAGAGTTTCACGTGTAAATTATGCATTCAAATCTTAATTGGACTACTTCTGTTATAACTTTGGAATGTACATCATTTCCTCATGCAAATATTGACTTATTGGTGTATTAAGATAAGTTGTGATCCATTTTAACCAACATAATTTATTGATATGCAGGCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAGATGGTGGAAATAGCCGAGTGGTAAGGCAATGATAGCGGTAGACTTTTCAAATTATGGTCTCTGGATTGTGTGTAACTCTTGCTCTTGATTGATCCTCTATGGAAGTTTCCTTTTCTTCAGTTCTCTCTCTGCAATAATTGTGACTGATTTGTCTTTTGCATGCTGAACAGGTTTCTGAGAAGAAAGCAAAGGAGTGGTGTACTTCTAAAGGGATACCTTACTTTGAGACATCAGCAAAAGAGGATATAAATGTTGATGCTGCATTCTTGTCTATTGCAAAAACTGCCTTGGCCAATGAGCACGAGCAGGATATGTGAGTTTTTGTGAATTTTCATGAATATAAACAACTCACTGTTGTTTGTTGCTTTTATTATTATGTGATATGGTGCTTACATACCTTGGAGCTTTGCATTAATAATAATATGAGCTAACTCAAGGGATGGGCTTGAAGGTGTTAAGTGAATTTATTCTAACATGTGACCACCCCTCGAATGTACAAGAATGTTTGCTAGTGGAGTACGATGAAACTAACATTAAGGGGATACTCGGGAGTTCAAAAATTTTTCTGGAACGGTGTGTGACAGAAGTCACTTGTCAGGATAATATTTTTCATGAGAGAGTCATTTTCTGATATTCAGTTGACAGAAACATATAATGGGCGAAAAATGACCTCCCTACGGTGGGAAGTGATCTACACTCAAACTATCTGGACTTTAAACTTCATATCACTTGCTTTAGCTAATACCTAGATACTGTTATTAATCTTAATACTCAAATCTCATCAAAACACTTACAAATTTACTAAGATTATTATTAATCTTTAATATGTTGTTTTCAAAATATACTTTTCACTCATCAATCAAACACTAGAATTTATTTTTCAAGATTAAGATTTTCCTTGGAAAATGACCTGTGTCATTTTAAACACACTTGAAACATTTGATTATTTTGGACAAGAAGATTGTTTGGTTTTGTTTTCTCAAAAAGTTTTTAGAAGAAAAAAGGCAAAACATATTAAATCATAAACCAAACAACAGGCTAAGAACTATTTTAGGTTCAAAATTCAAACAAACCATTGTAACTTTGAAATAACTATTCTTGCACGTTTTGTTTTTCTTTAATTCCATATAACATTTTGGGGGAGGTTCTCTAAAAACCATTCCAAGAAAAACTGCCCAAGGTTCATCTAAGAAACTCTCTTCTTGTTGCATGCATAAGATATCTCTTTAATCATAGAGATTCTCCTTACTTTCATATCTAGTTTATGATAACTATCACATGGAAATTATGCAGGAGAGAGTTATATTGAAGACTAGATAAGTAGACATTAGAATATTTCTTGTAAGGCTAGATTTTGAAGTCTAAAATCCATTAGTGGCAGAAAATGTGATAAGAAGACTGTGAAATCAGTGTTTGACTTACCATAAAGAAAGATAGAGTAGTAGTAATATAGTATTTTAGCATAGTTAGGAGTAGTTTTTGGGATGCTGCACTGCTGTATGTAATATGTAAGTTGTCATGAATAACCTTAGTCCATTAGATAAGCAGTATAGTATTTTATAGTTAACCCTTATCACCTTCTTGGTGCTGGTGTTATAGAAACAAATTACGTATGAAAATATACGCCAATATCAGGTGATTTATTTTCAGAACCATTTTGTGGCCCATCTCAGTTTTTCTTTTTGTGAAGACATTAAATCAGGGATAACATGAAATGAATCTTCACCACAGCATAGCAATGGTCTGCAAGAAAGTCTTTTCCAGTAGACCCAATTGATGATTAGGACTTCAAATCATGGAAAAACAGCATAAGGTGTTTATAGCATAAACATTGCCTTGGGAGGGATAACTAGGCAGGATAATACTTATCAGAGAAGTGTGTTTCTTGGGCTTTTTTTAGCGATATGTTTTGCAGACATTCTGATCTATTGCACTTATAGACGAAGAGCAAGACTGTACCATAGCTCTTGTGAAGGTTCCGACCTATCATGCTAGGGAGATGAATAAATCCTACTTAGGTGGTGAATCTGAAATAGTTCCGGCTCTTTGCGTCTTTGTCTCTGTGACTCCTTTTTATTTTGATTAGGTAAAGGTACTATTATTTAAACCGTACCAAGAGGGTTCCAGGGGAAGTACAAGAGGTCAGAATTTATGATTTCCTTATTGACTCAACGAGCCCAAAAATTGTGACATCTTCTCTAGAATGTAGCTTATACATCAAAAATATAGATTTTGTAGACAGTAAACTATACAAAGGAAATATGTTTATTCTTCCTTCCAAGCCTCTACTTTTTTTTCAGCCACACGGTCTAGTTTTCCAAAATTATGCACATAGGAATAGTCTTCCAAGCCTCTATGTATCTTTTGTCGTCCTTCTGCTCTTGCCAGCATATTAGGGTCTTCCTAACATCCGTGGCCTGCTTTACTCGAAACAGGTTTGTGAACAAAGGCCAAATGTGTCAGGTAAAGCTACAGAACAGAAATATATGGCTGCTGCTATCTAGGGAACTATTGCAAAGAAACACCTGTTACAGAGTGAAAGACGCCTTCTTGAGTAGGGACAAAACTGCCTGCTGTTTACTCATAGATCATTTGGTGCATTTGGCACAAAATTTGGTGAACTTTGATAGAATGAACACTATAGAAAATGAGTTCCTTTAACGGGCTACTGAATGTAAGATGGGTGTGAAAGAAGACATATTCCTAATTATGCATCAAAAGGTGTGGCAAAGTGGTCAATGAAGTGGTAGAACCATATAAGCTTAGCTCAAATCGCAACAGATATGTGCAAGCATTGGTGAATAGAGTTACCTTGTATCCGTGCTGGTGGGATGTAGCAGGTACCCCACGGAATTAGTCAAGGTGCAGGCAAGTTGACCTGGACACCACGGTTATTGATAATAGAAGAAATATTGCTGATTATTCAGCGGAAACAACATGATGGATTCATTCCTATTTGAGTTCTTTACATAAATGATGTAGGATGTAGAAAAACTTAGTTGATGTTATGGTGCAAGGAATATTCAAGTATTACCTGTTTAGAAGGTACTTTCTATTGGTTCTTGTATCTGAGGTAAATGTTGTGATAGCAAGTTGTTGATATGAGAGAAAGGCATCCTCCACTATGCTTGCAGGAACTATTCACATCAAATGGTGACTTTGTGTATAGTACTTAGTAGATCTTTGAAGAAATAACAAGTGTTGCTGTAGTTGAAGAACAAAAAGCAAGTCTCGTTGTTAGAATGTTTGTGGAATATTTACAAGAGCTGAGTTTTTAAGTTAGACAAGCAAAAGATCCATACAGGTACTAGCTAGTTAAAATTAATGTTAAATGTTTGTTGAAGAATTATGAGGATGCCAAAACCTTAAGGCAACAATGGAGTGACCTAGGAAACTCTGAAGCCCTTGGGTACACTTGTACAATCAATGAGGAAAAAGTGTCCTCTTAATACCGCCTTAGATGTGTAACCTGGTTCTACGGTTTACACGCATGGACTGAAAATTCTTGTTTTGTTTCTTTCAATTTGGGTATATTTAGTCTTTAGGATGAGGTTTGCTTACAACCCACCCTCCACAGACCTCACTCGTGGAACTATACTAGGTATGTTGTTATTTTTAGGGAGAGAGAGAGGAGGCTCAACATGAGTAGGTCAAGTAGGGAGAGTAGTGTGAAGATACGACTTTGGGTCTTGTGAAATTAGGTCTTATGCCTAATTCACATCCCAAAAGCTAGCTCAAAGGGAGAAGGATTGTCCAAGCCTTATAAGAATTCCACCCATCTCATTAACCACCGATGTGGGACTTTTGTCATTCTTTAACACCCAACCTCACGCCCAATGCTTAGCATCTGGTGCGTGAATAATTTCGATTTTTGGGACCCAACATCGAGTGAGACGGGCCCTACTCTGATAGGACCGAAATAAGCAGGTGTAAATGCGAAAGCTAGCAAAGCAAACCTCGAATGACTTGAGTAAGAACTAAGAAGACAAATGAGAAATACACCAAAAGAGATAGAAATTTAATGTGGTTCGGTTAATCGACCTATGTCTACAAAAGAACTGAGCAATCCACTATAAATATGAGAGTACAAAATATAGAGAAAAACAACCTTAACCAATTTCCTCAAAATACAAAGAGGGCTCAAAATTCTTCCCATGTAACAACTCTCAAAATCCTATGACTACATTGTGAATGCTAATTGAGTTAGAAAGAACAAACCTATATATTCATAGAGTGCTAAAACCTTTTCCTACCACAAAAAGACTACTCAAAATATTAAAACTTTTTTCTAAAAGGAATACTTATTTATATAAACCCCAATAATCTCCAATTTGGCCTGAATTTCTGACAAAATTATTTTGTCCACCTTCTTCACATGATCTTCAGGATCTTGCATCTTTTCTCCATAATCTCTTCCATCAAATCTATGTCTCGACACAGAGAACCTATTTGAAATAATTTCTCCAACATAGATCTTCATTACTATCAAAAAGGTTATGCGGTTAGTACTACACCTGCCAAGATGAACATCCAATTTTTAATTTGGTTCCATCAACAACCGTTGCACCTGGCTCTGATATAATGTGAAATTAGGTTTTAGGCCTAACTCACACCCCAAAAGCTTGCTCAAAGGGAGGAGGATTATCAAGCCTTATGAGGATCCACCCATCTCATTAACCACCAATGTGTGGGACTTTTGTCATTCTTTAACACCCAACCTTACGACCCTTCAAGGTGGCCAATGGTTTGAGCTTGGGACTTTCATGTTAGAGGTCTTAAGTTCAAAACTCCTTGCTAGCGAAAACAAGGGGTTTGCCTTTTGGGTCGAGCTCGTGCACCAGGTTTGCCTAGTGCGGGTTACCTCTCCTATGTAGTTTGCGAGCTATTGCATCGTAGCGGGGGTTTTACCTGTGCGCACCCAAAGGGTAGCGACTGTGGGTTTACTTGACATTAAAAAAAAACCCATCTTACGCCAATGCTTAGCATTTGATGCGTGGACAATTTTTGATTTTGTGGGCGTCAACATCGGGAGAGATGAGCCTTACTCTAATACCATGTGAAATCAGGTCTTAGGCCTAAATCACACCTCTAGAGCTATAACTTTTGAGGTGTGAGTTAGGACCAAGACCTAATTTCACAGGTCTAATTCGGCCTAAAGACTGGTTGAAGTGAGGATTGACCAAGTCCATATATGGAGACCACTAGCCCATTTTCCAAATAATGTGAAACTTCAAACCACTCTTGTATACCCCTGCACTCCCAAACCGCCAATTGGAGAATGTTGAAAATAATATTGGGGGCTCTAGTATAGATGGGCTTGGCTCTAGTACCATGTGGAGATATGACCCTCTGGCCTAACTCAACCTTTGAATATAGCTCTTTAGAGGAGAATTAGCCGAGTCTATATAAGAAGACCACTAGCCCATTCCCAACCAATGTTGGACTCTCACTTAGTCTAACAGGTTCAACAAGCTAACATTGGGTTGGAGCAATGTTAGTGATTCTATGGGCTGAATTTGTGAAAGAGAAGCATAGAGCAACTTCGTGGGCTGGGTTGAGAGAAAAAAAGCTTAAAGTGGCTCAATGGGACGAGTAAAGAGAAGCTCAGAGCATTACAGTAAGTAGAGAGAAGATAATTGTGCAAAAGGACTGACCAATGTATGGGTTCCATGGGAAAGGATCTGAGCTTCCAAACCAAAAGCTTAGTCGCTGAATTAAATACTTAGGCTGTCAGTAAAGCCCCTGCTTTTGTCACTTAAAGCAATGAGACGATGCGAAGCAACTGTTTATTGTTTCACAAGTAAAACAATGCACTTCAGAGAAGTGTGTGCTTAAATTTATGATGCACAAAGTTATCCAAATGAGAAGTGACATGCTCCTTGAGTCTCAATTTTGAGAAGTGACATGATCCTTGAGTCTCAATTTTGGATAGTTGGATTATATCCACATTATTGTATACGAGATGCTAAAGTTAGTTTTCTTGATTACATTTTGGTGATGCGTTTCACTTCTCACTTTTCAGTTCAAGTTCAATGAATCTTTCATATGATTGAATTTTTTGCTTTTAAAAACACCGAGTTCAAAGTATCATAAACCTCTTTGGAAACCCTTGTACAATCGACGACGATGAGATTGAAGGTCAAGTGTATTCTCCAAATTGTTTTTTGATAAATACTCTTTCTTTTTGATAAAATATACATTAGGCTTCGATAGGTATAAGTGTGAGAATTTGATGAATCTCTAATTTTAGGAAGTTCCTAATTTACCTAAAAGACAATTTTGCCCCTCTTCTTTCATCTATAAGTTTGTTCTTGGTTATACTGTAGGGCCAAATATTTCCACCGAAGTATGCAAAAATACCCCTCTTTTTAACGGTTGTCCACATACCTCAACGCCGCATGGCATGCCACCTCACCGCCAAATTTTCATTCTTTTTCCTTTTCTTTTCCTATTCCTTTTCTCTTTCTTACTTTTCTTCTTCACAAACTTTTTTCCCCTCTTTTTTCCAATGGCTTCCAGCAAATTCCCTTAGCTATACCTCAATAGCATCTTCCCCAATAACCCATAAAACTCACCAATTCCCTTTTTCCTCATTCATAAGAACCTCGTTCTCTCTGTAAACAAAAATCCATTAACCCAATAAATTAAAAATCAGGAAAAAAAAGAAAAGGAAGGTTCATTGATAGATACATATGCATCAAACACAACTATTATGAAATAAAATCTAAAAATGGTACAGCCCCCAGGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTAGCTTGGGTCACAGGTTCAAGCCCTACATCATGCAAAGTGAAGCCCGGTATTTAAGTGGAGAAGGGTAAAGTGGCGGGCCCATTGCCCACTGAGTTTAGAAGGCGGTAAGTGGTCCAAAGGGCGGGTCACAGATGGATTTCTCATTTATCAAGAAAATAATAAAATAAAATCTAAAAATGGTATCTTCAGGATAGGAATATTTCTAAAACTCCAAAACTCGTGTATATGGCAATGGAAGTATGAAGTTCAATTCTCTGAAAAATAGATATCAAAGAAAAATAAAATGAACACACAGATGGCCATCCTTATAGACGCTACAGAAAGAAATTTTCCTTTCATTTATGAGCAAAAGTAATGACTATTCGGGGGAAATGGTAATGGTGCTTTTACTGTTATTGGATATGGAAATTTGGTGAAGTATTGAAGAAGGGCTGTGGTGTTTTAGCCTTTAGGGAACAGAGATAAAATCGGAGCTCCAGGGAGAAGAAATAGAGCACCGAGGAAATGATGAGTTTCACGCGTTACTGGGAAAGATGCCATTGAGATATAGCTATAGGAAAGTGATGGATGCAATTGGAAAAAGAGAAGAAAAAAAGTTTGTGAAGAAGAAAGAGAAGGAAAAAAGAAAAAGAAGAAAAGGAAAAACAATTAAAATCTGGTGGTGAGGTGGCATCCACCTCACTCAAATGTCAGGCCATGTGGACAACCATTAAAAAGAGGGATATTTTTTCATACTTCGGTAACGGCAGAGACATATTTGTCCCTATAGTGTAACTAGTGAAAAACTTAACTAATAAATGAAAGTAGAGGGGTATTTTTGACCATTTCCCCAAGAATGAAATAGGGCTAACAAGTGGAATGAATGTAGAAGATACACATCAGCAATGCCTACTAATTTGGGATAAGGGTTATGTTGATTGATCGAGTGATATATTTCAGGACCTACTAGTTAGGGTAGAATGCTTTTGCAAAGGAGGTGCCGGTTGCAAAACAATAGTCTCATAAATGTTTTTTGATGTTTTCAAGCTTTATTTCTAGTTGAATGCTACAGTCCTTGAGTTAATGCTGATGAAAGCAACGGGGATATAAATCCATTTATCCGTTTTTTATCTGTAATGATCTTACATTATTTCTGTCTTTTTCTTGATCTTAGACAGGCATATGAACCTTATTCTACTAGATGAAGTGAAACACTTTTAGCCCTATTCAATTTGAAGTTTGTTAGCTTTTTTGAATCTTATTTTATCATGCATTTTGGTAAATTTTGAGAACTTGTTGTCTAGATTTTGATCTTGGGGTGACAGGTTGACTTTTGATGATTGACTCAAAAAGTAGGGTTGACAACTAGATATGCTCAACCGATTTTGTGTGTGACCTTATGTTGGTTTGGGAGGTCTAACTTAGTAGTGACTTTGTTTGGTGTCACTAATTTACCTGCCTAAAAATCTGATACTGTCTAATAGAGACGATCACGTGATATCTCAAGAGTTGATTATGCTGGCTCAACGGATTAGAAAGAAGTGAGGGAGCAGCATCAATTTTTTCATAGATAATAGTACATCTTAATGTTTTGTTTATGTTTAGCCTTTGTGGTATTCTGTGGGAGCTCAAATCTTAAGTAACTCTGACGTATGAACCGTATATACTGAACAGCATCTTTGTTCTGTTTTGCAGATACTTCCAAGGCATTCCAGAGGCAGTTTCAGAGACTGAACAAAGAGGTGGCTGTGCATGCTAAGGCGGATATAGTAATTCC</genome_strand>
        <mrna_strand>GCCGCTTTTCTCTGGTTTCTCTTTCTCTCTCTA-AATCCCCTTTCTTCTCTCTTCTGAAAATTGTCAACCCAGATTTGAAATTCCCAAATTCCATATACAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGG.....................................................................................................................................................GGTTGGTAAAACGTCATTAATGAATCA.......................................................................................................................................................................................................................................................................ATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACAAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAA.....................................................................................ATATGGGATACGGCCGGTCAAGAGAGATTCCAGAGTCTTGGAGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................GCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAGATGGTGGAAATAGCCGAGTG......................................................................................................................................................GTTTCTGAGAAGAAAGCAAAGGAGTGGTGTACTTCTAAAGGGATACCTTACTTTGAGACATCAGCAAAAGAGGATATAAATGTTGATGCTGCATTCTTGTCTATTGCAAAAACTGCCTTGGCCAATGAGCACGAGCAGGATAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCCAAGGCATTCCAGAAGCAGTTTCAGAGACTGAAACAAGAAGTGGCTGTGCATGCTAAGGCGGATATAGTAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610389" ref_strand="+" ref_description="SGN-E610389 [57549]">
      <seq>gaaattggcgccgcttttcactggtttctctttctctctctacaatcccctttcttctttcttctgaaaatgtcaacccagatttgaaatcccaaattccaaaaggggaaaaaacagggttcacttttgatttctctttcgccatgtctattcgtagaagaaccttgcttaaagttatcgtccttggcgatagtggggttggtaaaacgtcattaatgaatcaatatgtacacaagaagttcagtcagcaatataaagctacaattggagctgatttcgtgacgaaggagcttcaaattgatgacaggcttgttacactccaaatatgggatacggctggtcaagagagattccagagtcttggggttgcattttatagaggtgcagattgctgtgttttggtctatgatgttaatgtaatgcgatcctttgataaccttgacaattggcatgaagaatttctcaaacaggctaatccgccagaccctaaaacatttcctttcatattactggggaacaagattgatatagatggtggaaatagccgagtggtttctgagaagaaagcaaaggagtggtgtacttcaaaagggataccttactttgagacatcagcaaaagaggatataacatgttgatgctgcattcttgtctattgcaaaaactggcttggccaatgagcacgagcaggatatatacttccaaggcattccggaggcagtttcagagacggagcaaagaggtggctgttgcatgctaaggcagatgtagcaattcgagtgccatacatccatgttgttgcctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="29293" stop="18738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28993" g_stop="28805" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.873"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28804" i_stop="28656" i_length="149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28655" g_stop="28629" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="223" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28628" i_stop="28366" i_length="263">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28365" g_stop="28266" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="323" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28265" i_stop="28181" i_length="85">
            <donor d_prob="0.423" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28180" g_stop="28034" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="470" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28033" i_stop="27656" i_length="378">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27655" g_stop="27575" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="551" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27574" i_stop="27425" i_length="150">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27424" g_stop="27282" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="695" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27281" i_stop="19139" i_length="8143">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19138" g_stop="19065" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="770" r_length="75" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E610389" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28993" e_stop="28805"/>
          <exon e_start="28655" e_stop="28629"/>
          <exon e_start="28365" e_stop="28266"/>
          <exon e_start="28180" e_stop="28034"/>
          <exon e_start="27655" e_stop="27575"/>
          <exon e_start="27424" e_stop="27282"/>
          <exon e_start="19138" e_stop="19065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGGCGCCGCTTTTCTCTGGTTTCTCTTTCTCTCTCTACAATCCCCTTTCTTCTCTCTTCTGAAAATTGTCAACCCAGATTTGAAATTCCCAAATTCC-ATA---TA-----CAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGGGTACGATCCCTTTTCCTCTTCTCAATCCTCATTTCCGATTTTTTTATTTTTTATTTTTACAAATTTCTGATCTCCGGCTAGTCATTAGGAAATTAATTGGAGTATATAGTGCTAATATAATTTCTCCTTTTTTTTTTTTTGGTTTACAGGGTTGGTAAAACGTCATTAATGAATCAGTATCCTTTTCTACGACATTGCTAATTGTTTGAGGTCAAGTTTAATTTTTTGTTGAAAATATGAATTGGGTTTTATGAGTATTTCAGTTTCGTGTTGGTAGTTTTCAGAATTTAGTTAACTTATGAGTATCTATTTTGATTTTTTTGTTTTGGGTTCTGTGTATTTGTTATGGATTATTACAGTTTAAGACCGCATTGTTTTTTTTTTAAAAAAATTTATAATTGAAGTAGTTGGAAATGTGGGTCTTTGACGGTTAGCAAAGATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACAAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAAGTGGGTTTCTTGGCTATTGATATTGTGAAAAATGTTTTATGGAATTATGCGTTTACGCGAATGTGTTTGTGTTCTGGTTTGGTAGATATGGGATACGGCCGGTCAAGAGAGATTCCAGAGTCTTGGAGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAGGTTGGGTGATTATTCTCTGGGATTCGTTTGGTTCAGTAAATTTTTTTATTAAGTTGCTTAGGGTATCCTGATTGCTTAGTGTTTATACATTGCTATGAGTCGTGTTATCAACAAATTAGCAAATGCCTCTGAGACACTTAGTTAAACGCCTTTGAGACTAATTAATTCCTTCATTGTTTTCCTGTTTAAAGGTAAAAGATTTGGGATTACGTTGTGCATTTATAGAGTTTCACGTGTAAATTATGCATTCAAATCTTAATTGGACTACTTCTGTTATAACTTTGGAATGTACATCATTTCCTCATGCAAATATTGACTTATTGGTGTATTAAGATAAGTTGTGATCCATTTTAACCAACATAATTTATTGATATGCAGGCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAGATGGTGGAAATAGCCGAGTGGTAAGGCAATGATAGCGGTAGACTTTTCAAATTATGGTCTCTGGATTGTGTGTAACTCTTGCTCTTGATTGATCCTCTATGGAAGTTTCCTTTTCTTCAGTTCTCTCTCTGCAATAATTGTGACTGATTTGTCTTTTGCATGCTGAACAGGTTTCTGAGAAGAAAGCAAAGGAGTGGTGTACTTCTAAAGGGATACCTTACTTTGAGACATCAGCAAAAGAGGATATAA-ATGTTGATGCTGCATTCTTGTCTATTGCAAAAACTGCCTTGGCCAATGAGCACGAGCAGGATATGTGAGTTTTTGTGAATTTTCATGAATATAAACAACTCACTGTTGTTTGTTGCTTTTATTATTATGTGATATGGTGCTTACATACCTTGGAGCTTTGCATTAATAATAATATGAGCTAACTCAAGGGATGGGCTTGAAGGTGTTAAGTGAATTTATTCTAACATGTGACCACCCCTCGAATGTACAAGAATGTTTGCTAGTGGAGTACGATGAAACTAACATTAAGGGGATACTCGGGAGTTCAAAAATTTTTCTGGAACGGTGTGTGACAGAAGTCACTTGTCAGGATAATATTTTTCATGAGAGAGTCATTTTCTGATATTCAGTTGACAGAAACATATAATGGGCGAAAAATGACCTCCCTACGGTGGGAAGTGATCTACACTCAAACTATCTGGACTTTAAACTTCATATCACTTGCTTTAGCTAATACCTAGATACTGTTATTAATCTTAATACTCAAATCTCATCAAAACACTTACAAATTTACTAAGATTATTATTAATCTTTAATATGTTGTTTTCAAAATATACTTTTCACTCATCAATCAAACACTAGAATTTATTTTTCAAGATTAAGATTTTCCTTGGAAAATGACCTGTGTCATTTTAAACACACTTGAAACATTTGATTATTTTGGACAAGAAGATTGTTTGGTTTTGTTTTCTCAAAAAGTTTTTAGAAGAAAAAAGGCAAAACATATTAAATCATAAACCAAACAACAGGCTAAGAACTATTTTAGGTTCAAAATTCAAACAAACCATTGTAACTTTGAAATAACTATTCTTGCACGTTTTGTTTTTCTTTAATTCCATATAACATTTTGGGGGAGGTTCTCTAAAAACCATTCCAAGAAAAACTGCCCAAGGTTCATCTAAGAAACTCTCTTCTTGTTGCATGCATAAGATATCTCTTTAATCATAGAGATTCTCCTTACTTTCATATCTAGTTTATGATAACTATCACATGGAAATTATGCAGGAGAGAGTTATATTGAAGACTAGATAAGTAGACATTAGAATATTTCTTGTAAGGCTAGATTTTGAAGTCTAAAATCCATTAGTGGCAGAAAATGTGATAAGAAGACTGTGAAATCAGTGTTTGACTTACCATAAAGAAAGATAGAGTAGTAGTAATATAGTATTTTAGCATAGTTAGGAGTAGTTTTTGGGATGCTGCACTGCTGTATGTAATATGTAAGTTGTCATGAATAACCTTAGTCCATTAGATAAGCAGTATAGTATTTTATAGTTAACCCTTATCACCTTCTTGGTGCTGGTGTTATAGAAACAAATTACGTATGAAAATATACGCCAATATCAGGTGATTTATTTTCAGAACCATTTTGTGGCCCATCTCAGTTTTTCTTTTTGTGAAGACATTAAATCAGGGATAACATGAAATGAATCTTCACCACAGCATAGCAATGGTCTGCAAGAAAGTCTTTTCCAGTAGACCCAATTGATGATTAGGACTTCAAATCATGGAAAAACAGCATAAGGTGTTTATAGCATAAACATTGCCTTGGGAGGGATAACTAGGCAGGATAATACTTATCAGAGAAGTGTGTTTCTTGGGCTTTTTTTAGCGATATGTTTTGCAGACATTCTGATCTATTGCACTTATAGACGAAGAGCAAGACTGTACCATAGCTCTTGTGAAGGTTCCGACCTATCATGCTAGGGAGATGAATAAATCCTACTTAGGTGGTGAATCTGAAATAGTTCCGGCTCTTTGCGTCTTTGTCTCTGTGACTCCTTTTTATTTTGATTAGGTAAAGGTACTATTATTTAAACCGTACCAAGAGGGTTCCAGGGGAAGTACAAGAGGTCAGAATTTATGATTTCCTTATTGACTCAACGAGCCCAAAAATTGTGACATCTTCTCTAGAATGTAGCTTATACATCAAAAATATAGATTTTGTAGACAGTAAACTATACAAAGGAAATATGTTTATTCTTCCTTCCAAGCCTCTACTTTTTTTTCAGCCACACGGTCTAGTTTTCCAAAATTATGCACATAGGAATAGTCTTCCAAGCCTCTATGTATCTTTTGTCGTCCTTCTGCTCTTGCCAGCATATTAGGGTCTTCCTAACATCCGTGGCCTGCTTTACTCGAAACAGGTTTGTGAACAAAGGCCAAATGTGTCAGGTAAAGCTACAGAACAGAAATATATGGCTGCTGCTATCTAGGGAACTATTGCAAAGAAACACCTGTTACAGAGTGAAAGACGCCTTCTTGAGTAGGGACAAAACTGCCTGCTGTTTACTCATAGATCATTTGGTGCATTTGGCACAAAATTTGGTGAACTTTGATAGAATGAACACTATAGAAAATGAGTTCCTTTAACGGGCTACTGAATGTAAGATGGGTGTGAAAGAAGACATATTCCTAATTATGCATCAAAAGGTGTGGCAAAGTGGTCAATGAAGTGGTAGAACCATATAAGCTTAGCTCAAATCGCAACAGATATGTGCAAGCATTGGTGAATAGAGTTACCTTGTATCCGTGCTGGTGGGATGTAGCAGGTACCCCACGGAATTAGTCAAGGTGCAGGCAAGTTGACCTGGACACCACGGTTATTGATAATAGAAGAAATATTGCTGATTATTCAGCGGAAACAACATGATGGATTCATTCCTATTTGAGTTCTTTACATAAATGATGTAGGATGTAGAAAAACTTAGTTGATGTTATGGTGCAAGGAATATTCAAGTATTACCTGTTTAGAAGGTACTTTCTATTGGTTCTTGTATCTGAGGTAAATGTTGTGATAGCAAGTTGTTGATATGAGAGAAAGGCATCCTCCACTATGCTTGCAGGAACTATTCACATCAAATGGTGACTTTGTGTATAGTACTTAGTAGATCTTTGAAGAAATAACAAGTGTTGCTGTAGTTGAAGAACAAAAAGCAAGTCTCGTTGTTAGAATGTTTGTGGAATATTTACAAGAGCTGAGTTTTTAAGTTAGACAAGCAAAAGATCCATACAGGTACTAGCTAGTTAAAATTAATGTTAAATGTTTGTTGAAGAATTATGAGGATGCCAAAACCTTAAGGCAACAATGGAGTGACCTAGGAAACTCTGAAGCCCTTGGGTACACTTGTACAATCAATGAGGAAAAAGTGTCCTCTTAATACCGCCTTAGATGTGTAACCTGGTTCTACGGTTTACACGCATGGACTGAAAATTCTTGTTTTGTTTCTTTCAATTTGGGTATATTTAGTCTTTAGGATGAGGTTTGCTTACAACCCACCCTCCACAGACCTCACTCGTGGAACTATACTAGGTATGTTGTTATTTTTAGGGAGAGAGAGAGGAGGCTCAACATGAGTAGGTCAAGTAGGGAGAGTAGTGTGAAGATACGACTTTGGGTCTTGTGAAATTAGGTCTTATGCCTAATTCACATCCCAAAAGCTAGCTCAAAGGGAGAAGGATTGTCCAAGCCTTATAAGAATTCCACCCATCTCATTAACCACCGATGTGGGACTTTTGTCATTCTTTAACACCCAACCTCACGCCCAATGCTTAGCATCTGGTGCGTGAATAATTTCGATTTTTGGGACCCAACATCGAGTGAGACGGGCCCTACTCTGATAGGACCGAAATAAGCAGGTGTAAATGCGAAAGCTAGCAAAGCAAACCTCGAATGACTTGAGTAAGAACTAAGAAGACAAATGAGAAATACACCAAAAGAGATAGAAATTTAATGTGGTTCGGTTAATCGACCTATGTCTACAAAAGAACTGAGCAATCCACTATAAATATGAGAGTACAAAATATAGAGAAAAACAACCTTAACCAATTTCCTCAAAATACAAAGAGGGCTCAAAATTCTTCCCATGTAACAACTCTCAAAATCCTATGACTACATTGTGAATGCTAATTGAGTTAGAAAGAACAAACCTATATATTCATAGAGTGCTAAAACCTTTTCCTACCACAAAAAGACTACTCAAAATATTAAAACTTTTTTCTAAAAGGAATACTTATTTATATAAACCCCAATAATCTCCAATTTGGCCTGAATTTCTGACAAAATTATTTTGTCCACCTTCTTCACATGATCTTCAGGATCTTGCATCTTTTCTCCATAATCTCTTCCATCAAATCTATGTCTCGACACAGAGAACCTATTTGAAATAATTTCTCCAACATAGATCTTCATTACTATCAAAAAGGTTATGCGGTTAGTACTACACCTGCCAAGATGAACATCCAATTTTTAATTTGGTTCCATCAACAACCGTTGCACCTGGCTCTGATATAATGTGAAATTAGGTTTTAGGCCTAACTCACACCCCAAAAGCTTGCTCAAAGGGAGGAGGATTATCAAGCCTTATGAGGATCCACCCATCTCATTAACCACCAATGTGTGGGACTTTTGTCATTCTTTAACACCCAACCTTACGACCCTTCAAGGTGGCCAATGGTTTGAGCTTGGGACTTTCATGTTAGAGGTCTTAAGTTCAAAACTCCTTGCTAGCGAAAACAAGGGGTTTGCCTTTTGGGTCGAGCTCGTGCACCAGGTTTGCCTAGTGCGGGTTACCTCTCCTATGTAGTTTGCGAGCTATTGCATCGTAGCGGGGGTTTTACCTGTGCGCACCCAAAGGGTAGCGACTGTGGGTTTACTTGACATTAAAAAAAAACCCATCTTACGCCAATGCTTAGCATTTGATGCGTGGACAATTTTTGATTTTGTGGGCGTCAACATCGGGAGAGATGAGCCTTACTCTAATACCATGTGAAATCAGGTCTTAGGCCTAAATCACACCTCTAGAGCTATAACTTTTGAGGTGTGAGTTAGGACCAAGACCTAATTTCACAGGTCTAATTCGGCCTAAAGACTGGTTGAAGTGAGGATTGACCAAGTCCATATATGGAGACCACTAGCCCATTTTCCAAATAATGTGAAACTTCAAACCACTCTTGTATACCCCTGCACTCCCAAACCGCCAATTGGAGAATGTTGAAAATAATATTGGGGGCTCTAGTATAGATGGGCTTGGCTCTAGTACCATGTGGAGATATGACCCTCTGGCCTAACTCAACCTTTGAATATAGCTCTTTAGAGGAGAATTAGCCGAGTCTATATAAGAAGACCACTAGCCCATTCCCAACCAATGTTGGACTCTCACTTAGTCTAACAGGTTCAACAAGCTAACATTGGGTTGGAGCAATGTTAGTGATTCTATGGGCTGAATTTGTGAAAGAGAAGCATAGAGCAACTTCGTGGGCTGGGTTGAGAGAAAAAAAGCTTAAAGTGGCTCAATGGGACGAGTAAAGAGAAGCTCAGAGCATTACAGTAAGTAGAGAGAAGATAATTGTGCAAAAGGACTGACCAATGTATGGGTTCCATGGGAAAGGATCTGAGCTTCCAAACCAAAAGCTTAGTCGCTGAATTAAATACTTAGGCTGTCAGTAAAGCCCCTGCTTTTGTCACTTAAAGCAATGAGACGATGCGAAGCAACTGTTTATTGTTTCACAAGTAAAACAATGCACTTCAGAGAAGTGTGTGCTTAAATTTATGATGCACAAAGTTATCCAAATGAGAAGTGACATGCTCCTTGAGTCTCAATTTTGAGAAGTGACATGATCCTTGAGTCTCAATTTTGGATAGTTGGATTATATCCACATTATTGTATACGAGATGCTAAAGTTAGTTTTCTTGATTACATTTTGGTGATGCGTTTCACTTCTCACTTTTCAGTTCAAGTTCAATGAATCTTTCATATGATTGAATTTTTTGCTTTTAAAAACACCGAGTTCAAAGTATCATAAACCTCTTTGGAAACCCTTGTACAATCGACGACGATGAGATTGAAGGTCAAGTGTATTCTCCAAATTGTTTTTTGATAAATACTCTTTCTTTTTGATAAAATATACATTAGGCTTCGATAGGTATAAGTGTGAGAATTTGATGAATCTCTAATTTTAGGAAGTTCCTAATTTACCTAAAAGACAATTTTGCCCCTCTTCTTTCATCTATAAGTTTGTTCTTGGTTATACTGTAGGGCCAAATATTTCCACCGAAGTATGCAAAAATACCCCTCTTTTTAACGGTTGTCCACATACCTCAACGCCGCATGGCATGCCACCTCACCGCCAAATTTTCATTCTTTTTCCTTTTCTTTTCCTATTCCTTTTCTCTTTCTTACTTTTCTTCTTCACAAACTTTTTTCCCCTCTTTTTTCCAATGGCTTCCAGCAAATTCCCTTAGCTATACCTCAATAGCATCTTCCCCAATAACCCATAAAACTCACCAATTCCCTTTTTCCTCATTCATAAGAACCTCGTTCTCTCTGTAAACAAAAATCCATTAACCCAATAAATTAAAAATCAGGAAAAAAAAGAAAAGGAAGGTTCATTGATAGATACATATGCATCAAACACAACTATTATGAAATAAAATCTAAAAATGGTACAGCCCCCAGGGCCTAGCTCGAGTGGCAAAAGGTGGAGGATTTGTAGCTTGGGTCACAGGTTCAAGCCCTACATCATGCAAAGTGAAGCCCGGTATTTAAGTGGAGAAGGGTAAAGTGGCGGGCCCATTGCCCACTGAGTTTAGAAGGCGGTAAGTGGTCCAAAGGGCGGGTCACAGATGGATTTCTCATTTATCAAGAAAATAATAAAATAAAATCTAAAAATGGTATCTTCAGGATAGGAATATTTCTAAAACTCCAAAACTCGTGTATATGGCAATGGAAGTATGAAGTTCAATTCTCTGAAAAATAGATATCAAAGAAAAATAAAATGAACACACAGATGGCCATCCTTATAGACGCTACAGAAAGAAATTTTCCTTTCATTTATGAGCAAAAGTAATGACTATTCGGGGGAAATGGTAATGGTGCTTTTACTGTTATTGGATATGGAAATTTGGTGAAGTATTGAAGAAGGGCTGTGGTGTTTTAGCCTTTAGGGAACAGAGATAAAATCGGAGCTCCAGGGAGAAGAAATAGAGCACCGAGGAAATGATGAGTTTCACGCGTTACTGGGAAAGATGCCATTGAGATATAGCTATAGGAAAGTGATGGATGCAATTGGAAAAAGAGAAGAAAAAAAGTTTGTGAAGAAGAAAGAGAAGGAAAAAAGAAAAAGAAGAAAAGGAAAAACAATTAAAATCTGGTGGTGAGGTGGCATCCACCTCACTCAAATGTCAGGCCATGTGGACAACCATTAAAAAGAGGGATATTTTTTCATACTTCGGTAACGGCAGAGACATATTTGTCCCTATAGTGTAACTAGTGAAAAACTTAACTAATAAATGAAAGTAGAGGGGTATTTTTGACCATTTCCCCAAGAATGAAATAGGGCTAACAAGTGGAATGAATGTAGAAGATACACATCAGCAATGCCTACTAATTTGGGATAAGGGTTATGTTGATTGATCGAGTGATATATTTCAGGACCTACTAGTTAGGGTAGAATGCTTTTGCAAAGGAGGTGCCGGTTGCAAAACAATAGTCTCATAAATGTTTTTTGATGTTTTCAAGCTTTATTTCTAGTTGAATGCTACAGTCCTTGAGTTAATGCTGATGAAAGCAACGGGGATATAAATCCATTTATCCGTTTTTTATCTGTAATGATCTTACATTATTTCTGTCTTTTTCTTGATCTTAGACAGGCATATGAACCTTATTCTACTAGATGAAGTGAAACACTTTTAGCCCTATTCAATTTGAAGTTTGTTAGCTTTTTTGAATCTTATTTTATCATGCATTTTGGTAAATTTTGAGAACTTGTTGTCTAGATTTTGATCTTGGGGTGACAGGTTGACTTTTGATGATTGACTCAAAAAGTAGGGTTGACAACTAGATATGCTCAACCGATTTTGTGTGTGACCTTATGTTGGTTTGGGAGGTCTAACTTAGTAGTGACTTTGTTTGGTGTCACTAATTTACCTGCCTAAAAATCTGATACTGTCTAATAGAGACGATCACGTGATATCTCAAGAGTTGATTATGCTGGCTCAACGGATTAGAAAGAAGTGAGGGAGCAGCATCAATTTTTTCATAGATAATAGTACATCTTAATGTTTTGTTTATGTTTAGCCTTTGTGGTATTCTGTGGGAGCTCAAATCTTAAGTAACTCTGACGTATGAACCGTATATACTGAACAGCATCTTTGTTCTGTTTTGCAGATACTTCCAAGGCATTCCAGAGGCAGTTTCAGAGACTGAACAAAGAGGTGGCTG-TGCATGCTAAGGCGGATATA</genome_strand>
        <mrna_strand>GAAATTGGCGCCGCTTTTCACTGGTTTCTCTTTCTCTCTCTACAATCCCCTTTCTTCTTTCTTCTGAAAA-TGTCAACCCAGATTTGAAA-TCCCAAATTCCAAAAGGGGAAAAAACAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGG.....................................................................................................................................................GGTTGGTAAAACGTCATTAATGAATCA.......................................................................................................................................................................................................................................................................ATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACGAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAA.....................................................................................ATATGGGATACGGCTGGTCAAGAGAGATTCCAGAGTCTTGGGGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................GCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAGATGGTGGAAATAGCCGAGTG......................................................................................................................................................GTTTCTGAGAAGAAAGCAAAGGAGTGGTGTACTTCAAAAGGGATACCTTACTTTGAGACATCAGCAAAAGAGGATATAACATGTTGATGCTGCATTCTTGTCTATTGCAAAAACTGGCTTGGCCAATGAGCACGAGCAGGATAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTCCAAGGCATTCCGGAGGCAGTTTCAGAGACGGAGCAAAGAGGTGGCTGTTGCATGCTAAGGCAGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347426" ref_strand="+" ref_description="SGN-E347426 [cTOF-33-K1]">
      <seq>tggtttctctttctctctctacaatcccctttcttctctcttctgaaaattgtcaacccagatttgaaattcccaaattccatatacagggttcacttttgatttctctttcgccatgtctattcgtagaagaaccttgcttaaagttatcgtccttggcgatagtggggttggtaaaacgtcattaatgaatcaatatgtacacaagaagttcagtcagcaatataaagctacaattggagctgatttcgtgacaaaggagcttcaaattgatgacaggcttgttacactccaaatatgggatacggccggtcaagagagattccagagtcttggagttgcattttatagaggtgcagattgctgtgttttggtctatgatgttaatgtaatgcgatcctttgataaccttgacaattggcatgaagaatttctcaaacaggctaatccgccagaccctaaaacatttcctttcatattactggggaacaagattgatatagatggtggaaatagccgagtggtttctgagaagaaagcaaaggagtggtgtacttctaaagggataccttactttgagacatcagcaaaagaggatataaatgttgatgctgcattcttgtctattgcaaaaactgccttnggccatgagcacgagcaggatatatacttccaaggcattccagaggcagtttcagagactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="29272" stop="18800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28972" g_stop="28805" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28804" i_stop="28656" i_length="149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28655" g_stop="28629" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="195" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28628" i_stop="28366" i_length="263">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28365" g_stop="28266" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="295" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28265" i_stop="28181" i_length="85">
            <donor d_prob="0.423" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28180" g_stop="28034" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="442" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28033" i_stop="27656" i_length="378">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27655" g_stop="27575" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="523" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27574" i_stop="27425" i_length="150">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27424" g_stop="27282" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="666" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27281" i_stop="26997" i_length="285">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26996" g_stop="26958" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="705" r_length="39" r_score="0.487"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E347426" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28972" e_stop="28805"/>
          <exon e_start="28655" e_stop="28629"/>
          <exon e_start="28365" e_stop="28266"/>
          <exon e_start="28180" e_stop="28034"/>
          <exon e_start="27655" e_stop="27575"/>
          <exon e_start="27424" e_stop="27282"/>
          <exon e_start="26996" e_stop="26958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTCTCTTTCTCTCTCTACAATCCCCTTTCTTCTCTCTTCTGAAAATTGTCAACCCAGATTTGAAATTCCCAAATTCCATATACAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGGGTACGATCCCTTTTCCTCTTCTCAATCCTCATTTCCGATTTTTTTATTTTTTATTTTTACAAATTTCTGATCTCCGGCTAGTCATTAGGAAATTAATTGGAGTATATAGTGCTAATATAATTTCTCCTTTTTTTTTTTTTGGTTTACAGGGTTGGTAAAACGTCATTAATGAATCAGTATCCTTTTCTACGACATTGCTAATTGTTTGAGGTCAAGTTTAATTTTTTGTTGAAAATATGAATTGGGTTTTATGAGTATTTCAGTTTCGTGTTGGTAGTTTTCAGAATTTAGTTAACTTATGAGTATCTATTTTGATTTTTTTGTTTTGGGTTCTGTGTATTTGTTATGGATTATTACAGTTTAAGACCGCATTGTTTTTTTTTTAAAAAAATTTATAATTGAAGTAGTTGGAAATGTGGGTCTTTGACGGTTAGCAAAGATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACAAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAAGTGGGTTTCTTGGCTATTGATATTGTGAAAAATGTTTTATGGAATTATGCGTTTACGCGAATGTGTTTGTGTTCTGGTTTGGTAGATATGGGATACGGCCGGTCAAGAGAGATTCCAGAGTCTTGGAGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAGGTTGGGTGATTATTCTCTGGGATTCGTTTGGTTCAGTAAATTTTTTTATTAAGTTGCTTAGGGTATCCTGATTGCTTAGTGTTTATACATTGCTATGAGTCGTGTTATCAACAAATTAGCAAATGCCTCTGAGACACTTAGTTAAACGCCTTTGAGACTAATTAATTCCTTCATTGTTTTCCTGTTTAAAGGTAAAAGATTTGGGATTACGTTGTGCATTTATAGAGTTTCACGTGTAAATTATGCATTCAAATCTTAATTGGACTACTTCTGTTATAACTTTGGAATGTACATCATTTCCTCATGCAAATATTGACTTATTGGTGTATTAAGATAAGTTGTGATCCATTTTAACCAACATAATTTATTGATATGCAGGCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAGATGGTGGAAATAGCCGAGTGGTAAGGCAATGATAGCGGTAGACTTTTCAAATTATGGTCTCTGGATTGTGTGTAACTCTTGCTCTTGATTGATCCTCTATGGAAGTTTCCTTTTCTTCAGTTCTCTCTCTGCAATAATTGTGACTGATTTGTCTTTTGCATGCTGAACAGGTTTCTGAGAAGAAAGCAAAGGAGTGGTGTACTTCTAAAGGGATACCTTACTTTGAGACATCAGCAAAAGAGGATATAAATGTTGATGCTGCATTCTTGTCTATTGCAAAAACTGCCTTGGCCAATGAGCACGAGCAGGATATGTGAGTTTTTGTGAATTTTCATGAATATAAACAACTCACTGTTGTTTGTTGCTTTTATTATTATGTGATATGGTGCTTACATACCTTGGAGCTTTGCATTAATAATAATATGAGCTAACTCAAGGGATGGGCTTGAAGGTGTTAAGTGAATTTATTCTAACATGTGACCACCCCTCGAATGTACAAGAATGTTTGCTAGTGGAGTACGATGAAACTAACATTAAGGGGATACTCGGGAGTTCAAAAATTTTTCTGGAACGGTGTGTGACAGAAGTCACTTGTCAGGATAATATTTTTCATGAGAGAGTCATTTTCTGATATTCA</genome_strand>
        <mrna_strand>TGGTTTCTCTTTCTCTCTCTACAATCCCCTTTCTTCTCTCTTCTGAAAATTGTCAACCCAGATTTGAAATTCCCAAATTCCATATACAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGG.....................................................................................................................................................GGTTGGTAAAACGTCATTAATGAATCA.......................................................................................................................................................................................................................................................................ATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACAAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAA.....................................................................................ATATGGGATACGGCCGGTCAAGAGAGATTCCAGAGTCTTGGAGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................GCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAGATGGTGGAAATAGCCGAGTG......................................................................................................................................................GTTTCTGAGAAGAAAGCAAAGGAGTGGTGTACTTCTAAAGGGATACCTTACTTTGAGACATCAGCAAAAGAGGATATAAATGTTGATGCTGCATTCTTGTCTATTGCAAAAACTGCCTTNGGCCATGAGCACGAGCAGGATAT.............................................................................................................................................................................................................................................................................................ATACTTCCAAGGCATTCCAGAGGCAGTTTCAGAGACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267688" ref_strand="+" ref_description="SGN-E267688 [cLEI-12-C20]">
      <seq>tacaatcccctttcttctctcttctgaaaattgtcaacccagatttgaaattcccaaattccatatacagggttcacttttgatttctctttcgccatgtctattcgtagaagaaccttgcttaaagttatcgtccttggcgatagtggggttggtaaaacgtcattaatgaatcaatatgtacacaagaagttcagtcagcaatataaagctacaattggagctgatttcgtgacaaaggagcttcaaattgatgacaggcttgttacactccaaatatgggatacggccggtcaagagagattccagagtcttggagttgcattttatagaggtgcagattgctgtgttttggtctatgatgttaatgtaatgcgatcctttgataaccttgacaattggcatgaagaatttctcaaacaggctaatccgccagaccctaaaacatttcctttcatattactggggaacaagattgatataaatggtggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="29253" stop="27286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28953" g_stop="28805" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28804" i_stop="28656" i_length="149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28655" g_stop="28629" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="176" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28628" i_stop="28366" i_length="263">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28365" g_stop="28266" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="276" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28265" i_stop="28181" i_length="85">
            <donor d_prob="0.423" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28180" g_stop="28034" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="423" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28033" i_stop="27656" i_length="378">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27655" g_stop="27586" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="493" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E267688" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28953" e_stop="28805"/>
          <exon e_start="28655" e_stop="28629"/>
          <exon e_start="28365" e_stop="28266"/>
          <exon e_start="28180" e_stop="28034"/>
          <exon e_start="27655" e_stop="27586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATCCCCTTTCTTCTCTCTTCTGAAAATTGTCAACCCAGATTTGAAATTCCCAAATTCCATATACAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGGGTACGATCCCTTTTCCTCTTCTCAATCCTCATTTCCGATTTTTTTATTTTTTATTTTTACAAATTTCTGATCTCCGGCTAGTCATTAGGAAATTAATTGGAGTATATAGTGCTAATATAATTTCTCCTTTTTTTTTTTTTGGTTTACAGGGTTGGTAAAACGTCATTAATGAATCAGTATCCTTTTCTACGACATTGCTAATTGTTTGAGGTCAAGTTTAATTTTTTGTTGAAAATATGAATTGGGTTTTATGAGTATTTCAGTTTCGTGTTGGTAGTTTTCAGAATTTAGTTAACTTATGAGTATCTATTTTGATTTTTTTGTTTTGGGTTCTGTGTATTTGTTATGGATTATTACAGTTTAAGACCGCATTGTTTTTTTTTTAAAAAAATTTATAATTGAAGTAGTTGGAAATGTGGGTCTTTGACGGTTAGCAAAGATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACAAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAAGTGGGTTTCTTGGCTATTGATATTGTGAAAAATGTTTTATGGAATTATGCGTTTACGCGAATGTGTTTGTGTTCTGGTTTGGTAGATATGGGATACGGCCGGTCAAGAGAGATTCCAGAGTCTTGGAGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAGGTTGGGTGATTATTCTCTGGGATTCGTTTGGTTCAGTAAATTTTTTTATTAAGTTGCTTAGGGTATCCTGATTGCTTAGTGTTTATACATTGCTATGAGTCGTGTTATCAACAAATTAGCAAATGCCTCTGAGACACTTAGTTAAACGCCTTTGAGACTAATTAATTCCTTCATTGTTTTCCTGTTTAAAGGTAAAAGATTTGGGATTACGTTGTGCATTTATAGAGTTTCACGTGTAAATTATGCATTCAAATCTTAATTGGACTACTTCTGTTATAACTTTGGAATGTACATCATTTCCTCATGCAAATATTGACTTATTGGTGTATTAAGATAAGTTGTGATCCATTTTAACCAACATAATTTATTGATATGCAGGCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAGATGGTGGAA</genome_strand>
        <mrna_strand>TACAATCCCCTTTCTTCTCTCTTCTGAAAATTGTCAACCCAGATTTGAAATTCCCAAATTCCATATACAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGG.....................................................................................................................................................GGTTGGTAAAACGTCATTAATGAATCA.......................................................................................................................................................................................................................................................................ATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACAAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAA.....................................................................................ATATGGGATACGGCCGGTCAAGAGAGATTCCAGAGTCTTGGAGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................GCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAAATGGTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279481" ref_strand="+" ref_description="SGN-E279481 [cLER-5-G5]">
      <seq>ttctctgggttctctttctctctctacaatcccctttcttctctcttctgaaaattgtcaacccagatttgaaattcccaaattccatatacagggttcacttttgatttctctttcgccatgtctattcgtagaagaaccttgcttaaagttatcgtccttggcgatagtggggttggtaaaacgtcattaatgaatcaatatgtacacaagaagttcagtcagcaatataaagctacaattggagctgatttcgtgacaaaggagcttcaaattgatgacaggcttgttacactccaaatatgggatacggccggtcaagagagattccagagtcttggagttgcattttatagaggtgcagattgctgtgttttggtctatgatgttaatgtaatgcgatcctttgataaccttgacaattggcatgaagaatttctcaaacaggctaatccgccagaccctaaaacatttcctttcatattactggggaacaagattgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="29277" stop="27298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28977" g_stop="28805" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28804" i_stop="28656" i_length="149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28655" g_stop="28629" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="200" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28628" i_stop="28366" i_length="263">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28365" g_stop="28266" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="300" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28265" i_stop="28181" i_length="85">
            <donor d_prob="0.423" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28180" g_stop="28034" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="447" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28033" i_stop="27656" i_length="378">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27655" g_stop="27598" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="505" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E279481" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28977" e_stop="28805"/>
          <exon e_start="28655" e_stop="28629"/>
          <exon e_start="28365" e_stop="28266"/>
          <exon e_start="28180" e_stop="28034"/>
          <exon e_start="27655" e_stop="27598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGGTTTCTCTTTCTCTCTCTACAATCCCCTTTCTTCTCTCTTCTGAAAATTGTCAACCCAGATTTGAAATTCCCAAATTCCATATACAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGGGTACGATCCCTTTTCCTCTTCTCAATCCTCATTTCCGATTTTTTTATTTTTTATTTTTACAAATTTCTGATCTCCGGCTAGTCATTAGGAAATTAATTGGAGTATATAGTGCTAATATAATTTCTCCTTTTTTTTTTTTTGGTTTACAGGGTTGGTAAAACGTCATTAATGAATCAGTATCCTTTTCTACGACATTGCTAATTGTTTGAGGTCAAGTTTAATTTTTTGTTGAAAATATGAATTGGGTTTTATGAGTATTTCAGTTTCGTGTTGGTAGTTTTCAGAATTTAGTTAACTTATGAGTATCTATTTTGATTTTTTTGTTTTGGGTTCTGTGTATTTGTTATGGATTATTACAGTTTAAGACCGCATTGTTTTTTTTTTAAAAAAATTTATAATTGAAGTAGTTGGAAATGTGGGTCTTTGACGGTTAGCAAAGATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACAAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAAGTGGGTTTCTTGGCTATTGATATTGTGAAAAATGTTTTATGGAATTATGCGTTTACGCGAATGTGTTTGTGTTCTGGTTTGGTAGATATGGGATACGGCCGGTCAAGAGAGATTCCAGAGTCTTGGAGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAGGTTGGGTGATTATTCTCTGGGATTCGTTTGGTTCAGTAAATTTTTTTATTAAGTTGCTTAGGGTATCCTGATTGCTTAGTGTTTATACATTGCTATGAGTCGTGTTATCAACAAATTAGCAAATGCCTCTGAGACACTTAGTTAAACGCCTTTGAGACTAATTAATTCCTTCATTGTTTTCCTGTTTAAAGGTAAAAGATTTGGGATTACGTTGTGCATTTATAGAGTTTCACGTGTAAATTATGCATTCAAATCTTAATTGGACTACTTCTGTTATAACTTTGGAATGTACATCATTTCCTCATGCAAATATTGACTTATTGGTGTATTAAGATAAGTTGTGATCCATTTTAACCAACATAATTTATTGATATGCAGGCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATA</genome_strand>
        <mrna_strand>TTCTCTGGGTTCTCTTTCTCTCTCTACAATCCCCTTTCTTCTCTCTTCTGAAAATTGTCAACCCAGATTTGAAATTCCCAAATTCCATATACAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGG.....................................................................................................................................................GGTTGGTAAAACGTCATTAATGAATCA.......................................................................................................................................................................................................................................................................ATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACAAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAA.....................................................................................ATATGGGATACGGCCGGTCAAGAGAGATTCCAGAGTCTTGGAGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................GCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249258" ref_strand="+" ref_description="SGN-E249258 [cLEF-50-D8]">
      <seq>aaatatcgaaattggcgccgcttttctctggtttctctttctctctctacaatcccctttcttctctcttctgaaaattgtcaacccagatttgaaattcccaaattccatatacagggttcacttttgatttctctttcgccatgtctattcgtagaagaaccttgcttaaagttatcgtccttggcgatagtggggttggtaaaacgtcattaatgaatcaatatgtacacaagaagttcagtcagcaatataaagctacaattggagctgatttcgtgacaaaggagcttcaaattgatgacaggcttgttacactccaaatatgggatacggccggtcaagagagattccagagtcttggagttgcattttatagaggtgcagattgctgtgttttggtctatgatgttaatgtaatgcgatcctttgataaccttgacaattggcatgaagaatttctcaaacaggctaatccgccagaccctaaaacatttcctttcatattactggggaacaagattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="29300" stop="27300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29000" g_stop="28805" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28804" i_stop="28656" i_length="149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28655" g_stop="28629" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="223" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28628" i_stop="28366" i_length="263">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28365" g_stop="28266" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="323" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28265" i_stop="28181" i_length="85">
            <donor d_prob="0.423" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28180" g_stop="28034" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="470" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28033" i_stop="27656" i_length="378">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27655" g_stop="27600" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="526" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E249258" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29000" e_stop="28805"/>
          <exon e_start="28655" e_stop="28629"/>
          <exon e_start="28365" e_stop="28266"/>
          <exon e_start="28180" e_stop="28034"/>
          <exon e_start="27655" e_stop="27600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATCGAAATTGGCGCCGCTTTTCTCTGGTTTCTCTTTCTCTCTCTACAATCCCCTTTCTTCTCTCTTCTGAAAATTGTCAACCCAGATTTGAAATTCCCAAATTCCATATACAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGGGTACGATCCCTTTTCCTCTTCTCAATCCTCATTTCCGATTTTTTTATTTTTTATTTTTACAAATTTCTGATCTCCGGCTAGTCATTAGGAAATTAATTGGAGTATATAGTGCTAATATAATTTCTCCTTTTTTTTTTTTTGGTTTACAGGGTTGGTAAAACGTCATTAATGAATCAGTATCCTTTTCTACGACATTGCTAATTGTTTGAGGTCAAGTTTAATTTTTTGTTGAAAATATGAATTGGGTTTTATGAGTATTTCAGTTTCGTGTTGGTAGTTTTCAGAATTTAGTTAACTTATGAGTATCTATTTTGATTTTTTTGTTTTGGGTTCTGTGTATTTGTTATGGATTATTACAGTTTAAGACCGCATTGTTTTTTTTTTAAAAAAATTTATAATTGAAGTAGTTGGAAATGTGGGTCTTTGACGGTTAGCAAAGATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACAAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAAGTGGGTTTCTTGGCTATTGATATTGTGAAAAATGTTTTATGGAATTATGCGTTTACGCGAATGTGTTTGTGTTCTGGTTTGGTAGATATGGGATACGGCCGGTCAAGAGAGATTCCAGAGTCTTGGAGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAGGTTGGGTGATTATTCTCTGGGATTCGTTTGGTTCAGTAAATTTTTTTATTAAGTTGCTTAGGGTATCCTGATTGCTTAGTGTTTATACATTGCTATGAGTCGTGTTATCAACAAATTAGCAAATGCCTCTGAGACACTTAGTTAAACGCCTTTGAGACTAATTAATTCCTTCATTGTTTTCCTGTTTAAAGGTAAAAGATTTGGGATTACGTTGTGCATTTATAGAGTTTCACGTGTAAATTATGCATTCAAATCTTAATTGGACTACTTCTGTTATAACTTTGGAATGTACATCATTTCCTCATGCAAATATTGACTTATTGGTGTATTAAGATAAGTTGTGATCCATTTTAACCAACATAATTTATTGATATGCAGGCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGA</genome_strand>
        <mrna_strand>AAATATCGAAATTGGCGCCGCTTTTCTCTGGTTTCTCTTTCTCTCTCTACAATCCCCTTTCTTCTCTCTTCTGAAAATTGTCAACCCAGATTTGAAATTCCCAAATTCCATATACAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGG.....................................................................................................................................................GGTTGGTAAAACGTCATTAATGAATCA.......................................................................................................................................................................................................................................................................ATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACAAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAA.....................................................................................ATATGGGATACGGCCGGTCAAGAGAGATTCCAGAGTCTTGGAGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAG..........................................................................................................................................................................................................................................................................................................................................................................................GCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324115" ref_strand="+" ref_description="SGN-E324115 [cTOC-3-L17]">
      <seq>aaatatcgaaattggcgccgcttttctctggtttctctttctctctctacaatcccctttcttctctcttctgaaaattgtcaacccagatttgaaattcccaaattccatatacagggttcacttttgatttctctttcgccatgtctattcgtagaagaaccttgcttaaagttatcgtccttggcgatagtggggttggtaaaacgtcattaatgaatcaatatgtacacaagaagttcagtcagcaatataaagctacaattggagctgatttcgtgacaaaggagcttcaaattgatgacaggcttgttacactccaaatatgggatacggccggtcaagagagattccagagtcttggagttgcattttatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="29300" stop="27825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29000" g_stop="28805" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28804" i_stop="28656" i_length="149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28655" g_stop="28629" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="223" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28628" i_stop="28366" i_length="263">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28365" g_stop="28266" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="323" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28265" i_stop="28181" i_length="85">
            <donor d_prob="0.423" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28180" g_stop="28125" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="379" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E324115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29000" e_stop="28805"/>
          <exon e_start="28655" e_stop="28629"/>
          <exon e_start="28365" e_stop="28266"/>
          <exon e_start="28180" e_stop="28125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATCGAAATTGGCGCCGCTTTTCTCTGGTTTCTCTTTCTCTCTCTACAATCCCCTTTCTTCTCTCTTCTGAAAATTGTCAACCCAGATTTGAAATTCCCAAATTCCATATACAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGGGTACGATCCCTTTTCCTCTTCTCAATCCTCATTTCCGATTTTTTTATTTTTTATTTTTACAAATTTCTGATCTCCGGCTAGTCATTAGGAAATTAATTGGAGTATATAGTGCTAATATAATTTCTCCTTTTTTTTTTTTTGGTTTACAGGGTTGGTAAAACGTCATTAATGAATCAGTATCCTTTTCTACGACATTGCTAATTGTTTGAGGTCAAGTTTAATTTTTTGTTGAAAATATGAATTGGGTTTTATGAGTATTTCAGTTTCGTGTTGGTAGTTTTCAGAATTTAGTTAACTTATGAGTATCTATTTTGATTTTTTTGTTTTGGGTTCTGTGTATTTGTTATGGATTATTACAGTTTAAGACCGCATTGTTTTTTTTTTAAAAAAATTTATAATTGAAGTAGTTGGAAATGTGGGTCTTTGACGGTTAGCAAAGATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACAAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAAGTGGGTTTCTTGGCTATTGATATTGTGAAAAATGTTTTATGGAATTATGCGTTTACGCGAATGTGTTTGTGTTCTGGTTTGGTAGATATGGGATACGGCCGGTCAAGAGAGATTCCAGAGTCTTGGAGTTGCATTTTATAG</genome_strand>
        <mrna_strand>AAATATCGAAATTGGCGCCGCTTTTCTCTGGTTTCTCTTTCTCTCTCTACAATCCCCTTTCTTCTCTCTTCTGAAAATTGTCAACCCAGATTTGAAATTCCCAAATTCCATATACAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGG.....................................................................................................................................................GGTTGGTAAAACGTCATTAATGAATCA.......................................................................................................................................................................................................................................................................ATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACAAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAA.....................................................................................ATATGGGATACGGCCGGTCAAGAGAGATTCCAGAGTCTTGGAGTTGCATTTTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211810" ref_strand="+" ref_description="SGN-E211810 [cLEC-66-J17]">
      <seq>ttggctcttccacttcccaagaaacaacaaatgtcatttctcatcaacattatcaaaccataaaccctaatttttatgcttttcatgatcctcttatcaacatgaatcaagatcatgtccacaataataattataataagtatcaagattatgacacttcatttcttgatttgtttgttgatggtgatcaagaatattattccaattacacaaacaataatgcttcaatttatttagaaaatcccttcaagcaacaagagataagtagtagtacctatagtactagtggaaactcatcatcagctagttcatttgatgccacaccaacacatgttcacatgaataatgaaaatacaagcatagggattgagaaagaaaaaaaaggtgaaaaacatgcaattgcttttagaacaaaaacacaacttgagaccttggatgatggatacaaatggaggaaatatgggaagaagaaagtgaaaaccaacataaatctaaggaattactacaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="34092" stop="32698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33792" g_stop="33444" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33443" i_stop="33155" i_length="289">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33154" g_stop="33008" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="496" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E211810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33792" e_stop="33444"/>
          <exon e_start="33154" e_stop="33008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTCTTCCACTTCCCAAGAAACAACAAATGTCATTTCTCATCAACATTATCAAACCATAAACCCTAATTTTTATGCTTTTCATGATCCTCTTATCAACATGAATCAAGATCATGTCCACAATAATAATTATAATAAGTATCAAGATTATGACACTTCATTTCTTGATTTGTTTGTTGATGGTGATCAAGAATATTATTCCAATTACACAAACAATAATGCTTCAATTTATTTAGAAAATCCCTTCAAGCAACAAGAGATAAGTAGTAGTACCTATAGTACTAGTGGAAACTCATCATCAGCTAGTTCATTTGATGCCACACCAACACATGTTCACATGAATAATGAGTAAGTCACTATGTAGACAGTGCTGGAGTTAAGATTTTGAGTTTAAAACATCATTCTGAATAGTAAATAATGTATTCTGACTAAATTATTCATGCTTAAAGTGGATCTAGCTATAACTTTTGAGTGTTATTGAACCTTAAATCGAAGTTGTAGTTCTATCTCTATAATAAGTAGATAGAGTAATTATAATAAGTATTGATAATTATTCAATGATTTTGTTGGTTCATTTATTTATTTATTTATTTATTTATTATTTACTTGTTTGTTTGGTTTTGATTTATTTTAATAGAAATACAAGCATAGGGATTGAGAAAGAAAAAAAAGGTGAAAAACATGCAATTGCTTTTAGAACAAAAACACAACTTGAGACCTTGGATGATGGATACAAATGGAGGAAATATGGGAAGAAGAAAGTGAAAACCAACATAAATCTAAG</genome_strand>
        <mrna_strand>TTGGCTCTTCCACTTCCCAAGAAACAACAAATGTCATTTCTCATCAACATTATCAAACCATAAACCCTAATTTTTATGCTTTTCATGATCCTCTTATCAACATGAATCAAGATCATGTCCACAATAATAATTATAATAAGTATCAAGATTATGACACTTCATTTCTTGATTTGTTTGTTGATGGTGATCAAGAATATTATTCCAATTACACAAACAATAATGCTTCAATTTATTTAGAAAATCCCTTCAAGCAACAAGAGATAAGTAGTAGTACCTATAGTACTAGTGGAAACTCATCATCAGCTAGTTCATTTGATGCCACACCAACACATGTTCACATGAATAATGA.................................................................................................................................................................................................................................................................................................AAATACAAGCATAGGGATTGAGAAAGAAAAAAAAGGTGAAAAACATGCAATTGCTTTTAGAACAAAAACACAACTTGAGACCTTGGATGATGGATACAAATGGAGGAAATATGGGAAGAAGAAAGTGAAAACCAACATAAATCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204957" ref_strand="+" ref_description="SGN-E204957 [cLEC-16-C4]">
      <seq>ttggctcttccacttcccaagaaacaacaaatgtcatttctcatcaacattatcaaaccataaaccctaatttttatgcttttcatgatcctcttatcaacatgaatcaagatcatgtccacaataataattataataagtatcaagattatgacacttcatttcttgatttgtttgttgatggtgatcaagaatattattccaattacacaaacaataatgcttcaatttatttagaaaatcccttcaagcaacaagagataagtagtagtacctatagtactagtggaaactcatcatcagctagttcatttgatgccacaccaacacatgttcacatgaataatgaaaatacaagcatagggattgagaaagaaaaaaaaggtgaaaaacatgcaattgcttttagaacaaaaacacaacttgagaccttggatgatggatacaaatggaggaaatatgggaagaagaaagtgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="34092" stop="32724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33792" g_stop="33444" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33443" i_stop="33155" i_length="289">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33154" g_stop="33024" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="480" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E204957" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33792" e_stop="33444"/>
          <exon e_start="33154" e_stop="33024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTCTTCCACTTCCCAAGAAACAACAAATGTCATTTCTCATCAACATTATCAAACCATAAACCCTAATTTTTATGCTTTTCATGATCCTCTTATCAACATGAATCAAGATCATGTCCACAATAATAATTATAATAAGTATCAAGATTATGACACTTCATTTCTTGATTTGTTTGTTGATGGTGATCAAGAATATTATTCCAATTACACAAACAATAATGCTTCAATTTATTTAGAAAATCCCTTCAAGCAACAAGAGATAAGTAGTAGTACCTATAGTACTAGTGGAAACTCATCATCAGCTAGTTCATTTGATGCCACACCAACACATGTTCACATGAATAATGAGTAAGTCACTATGTAGACAGTGCTGGAGTTAAGATTTTGAGTTTAAAACATCATTCTGAATAGTAAATAATGTATTCTGACTAAATTATTCATGCTTAAAGTGGATCTAGCTATAACTTTTGAGTGTTATTGAACCTTAAATCGAAGTTGTAGTTCTATCTCTATAATAAGTAGATAGAGTAATTATAATAAGTATTGATAATTATTCAATGATTTTGTTGGTTCATTTATTTATTTATTTATTTATTTATTATTTACTTGTTTGTTTGGTTTTGATTTATTTTAATAGAAATACAAGCATAGGGATTGAGAAAGAAAAAAAAGGTGAAAAACATGCAATTGCTTTTAGAACAAAAACACAACTTGAGACCTTGGATGATGGATACAAATGGAGGAAATATGGGAAGAAGAAAGTGAAAA</genome_strand>
        <mrna_strand>TTGGCTCTTCCACTTCCCAAGAAACAACAAATGTCATTTCTCATCAACATTATCAAACCATAAACCCTAATTTTTATGCTTTTCATGATCCTCTTATCAACATGAATCAAGATCATGTCCACAATAATAATTATAATAAGTATCAAGATTATGACACTTCATTTCTTGATTTGTTTGTTGATGGTGATCAAGAATATTATTCCAATTACACAAACAATAATGCTTCAATTTATTTAGAAAATCCCTTCAAGCAACAAGAGATAAGTAGTAGTACCTATAGTACTAGTGGAAACTCATCATCAGCTAGTTCATTTGATGCCACACCAACACATGTTCACATGAATAATGA.................................................................................................................................................................................................................................................................................................AAATACAAGCATAGGGATTGAGAAAGAAAAAAAAGGTGAAAAACATGCAATTGCTTTTAGAACAAAAACACAACTTGAGACCTTGGATGATGGATACAAATGGAGGAAATATGGGAAGAAGAAAGTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239708" ref_strand="+" ref_description="SGN-E239708 [cLED-33-C5]">
      <seq>tcacatattctatcaaagactcttttaaagtctttcttctcaaaaataatagtattagagaccatgtttggctcttccacttcccaagaaacaacaaatgtcatttctcatcaacattatcaaaccataaaccctaatttttatgcttttcatgatcctcttatcaacatgaatcaagatcatgtccacaataataattataataagtatcaagattatgacacttcatttcttgatttgtttgttgatggtgatcaagaatattattccaattacacaaacaataatgcttcaatttatttagaaaatcccttcaagcaacaagagataagtagtagtacctatagtactagtggaaactcatcatcagctagttcatttgatgccacaccaacacatgttcacatgaataatgaaaatacaagcatagggattgagaaagaaaaaaaaggtgaaaaacatgcaattgcttttagaacaaaaacacaacttgagaccttggatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="34159" stop="32763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33859" g_stop="33444" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33443" i_stop="33155" i_length="289">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33154" g_stop="33063" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="508" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E239708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33859" e_stop="33444"/>
          <exon e_start="33154" e_stop="33063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATATTCTATCAAAGACTCTTTTAAAGTCTTTCTTCTCAAAAATAATAGTATTAGAGACCATGTTTGGCTCTTCCACTTCCCAAGAAACAACAAATGTCATTTCTCATCAACATTATCAAACCATAAACCCTAATTTTTATGCTTTTCATGATCCTCTTATCAACATGAATCAAGATCATGTCCACAATAATAATTATAATAAGTATCAAGATTATGACACTTCATTTCTTGATTTGTTTGTTGATGGTGATCAAGAATATTATTCCAATTACACAAACAATAATGCTTCAATTTATTTAGAAAATCCCTTCAAGCAACAAGAGATAAGTAGTAGTACCTATAGTACTAGTGGAAACTCATCATCAGCTAGTTCATTTGATGCCACACCAACACATGTTCACATGAATAATGAGTAAGTCACTATGTAGACAGTGCTGGAGTTAAGATTTTGAGTTTAAAACATCATTCTGAATAGTAAATAATGTATTCTGACTAAATTATTCATGCTTAAAGTGGATCTAGCTATAACTTTTGAGTGTTATTGAACCTTAAATCGAAGTTGTAGTTCTATCTCTATAATAAGTAGATAGAGTAATTATAATAAGTATTGATAATTATTCAATGATTTTGTTGGTTCATTTATTTATTTATTTATTTATTTATTATTTACTTGTTTGTTTGGTTTTGATTTATTTTAATAGAAATACAAGCATAGGGATTGAGAAAGAAAAAAAAGGTGAAAAACATGCAATTGCTTTTAGAACAAAAACACAACTTGAGACCTTGGATGATG</genome_strand>
        <mrna_strand>TCACATATTCTATCAAAGACTCTTTTAAAGTCTTTCTTCTCAAAAATAATAGTATTAGAGACCATGTTTGGCTCTTCCACTTCCCAAGAAACAACAAATGTCATTTCTCATCAACATTATCAAACCATAAACCCTAATTTTTATGCTTTTCATGATCCTCTTATCAACATGAATCAAGATCATGTCCACAATAATAATTATAATAAGTATCAAGATTATGACACTTCATTTCTTGATTTGTTTGTTGATGGTGATCAAGAATATTATTCCAATTACACAAACAATAATGCTTCAATTTATTTAGAAAATCCCTTCAAGCAACAAGAGATAAGTAGTAGTACCTATAGTACTAGTGGAAACTCATCATCAGCTAGTTCATTTGATGCCACACCAACACATGTTCACATGAATAATGA.................................................................................................................................................................................................................................................................................................AAATACAAGCATAGGGATTGAGAAAGAAAAAAAAGGTGAAAAACATGCAATTGCTTTTAGAACAAAAACACAACTTGAGACCTTGGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354687" ref_strand="+" ref_description="SGN-E354687 [cLHT-5-L10]">
      <seq>ttctatcaaagactctcttaaagtctttcttctcaaaaatatagtattataccatgtttggctcttccacttcccaagaaacaacaaatgtcatttctcatcaacattatcaaaccataaaccctaatttttatgcttttcatgatcctctcatcaacatgaatcaagatcatctccatactaataattataataagtatcaagattatgacacttcatttcttgatttgttagctgatggtgatcaagaatattattccaattacacaaacaataatgcttcaatttatttagaaaatcccttcaagcaacaagagataagtcgtagtacctatagtactagtggaaactcatcatcagctagttcatttgatgccacaccaacaaatgttcacatgaataatgaaaattcaagcatggggattgagaaagaaaaaaaaggtgaaaaacatgcaattgcttttagaataaaaacacaacttgacaccttggatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="34152" stop="32764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33852" g_stop="33444" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33443" i_stop="33155" i_length="289">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33154" g_stop="33064" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="497" r_length="91" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E354687" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33852" e_stop="33444"/>
          <exon e_start="33154" e_stop="33064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATCAAAGACTCTTTTAAAGTCTTTCTTCTCAAAAATAATAGTATTAGAGACCATGTTTGGCTCTTCCACTTCCCAAGAAACAACAAATGTCATTTCTCATCAACATTATCAAACCATAAACCCTAATTTTTATGCTTTTCATGATCCTCTTATCAACATGAATCAAGATCATGTCCACAATAATAATTATAATAAGTATCAAGATTATGACACTTCATTTCTTGATTTGTTTGTTGATGGTGATCAAGAATATTATTCCAATTACACAAACAATAATGCTTCAATTTATTTAGAAAATCCCTTCAAGCAACAAGAGATAAGTAGTAGTACCTATAGTACTAGTGGAAACTCATCATCAGCTAGTTCATTTGATGCCACACCAACACATGTTCACATGAATAATGAGTAAGTCACTATGTAGACAGTGCTGGAGTTAAGATTTTGAGTTTAAAACATCATTCTGAATAGTAAATAATGTATTCTGACTAAATTATTCATGCTTAAAGTGGATCTAGCTATAACTTTTGAGTGTTATTGAACCTTAAATCGAAGTTGTAGTTCTATCTCTATAATAAGTAGATAGAGTAATTATAATAAGTATTGATAATTATTCAATGATTTTGTTGGTTCATTTATTTATTTATTTATTTATTTATTATTTACTTGTTTGTTTGGTTTTGATTTATTTTAATAGAAATACAAGCATAGGGATTGAGAAAGAAAAAAAAGGTGAAAAACATGCAATTGCTTTTAGAACAAAAACACAACTTGAGACCTTGGATGAT</genome_strand>
        <mrna_strand>TTCTATCAAAGACTCTCTTAAAGTCTTTCTTCTCAAAAAT-ATAGTATT--ATACCATGTTTGGCTCTTCCACTTCCCAAGAAACAACAAATGTCATTTCTCATCAACATTATCAAACCATAAACCCTAATTTTTATGCTTTTCATGATCCTCTCATCAACATGAATCAAGATCATCTCCATACTAATAATTATAATAAGTATCAAGATTATGACACTTCATTTCTTGATTTGTTAGCTGATGGTGATCAAGAATATTATTCCAATTACACAAACAATAATGCTTCAATTTATTTAGAAAATCCCTTCAAGCAACAAGAGATAAGTCGTAGTACCTATAGTACTAGTGGAAACTCATCATCAGCTAGTTCATTTGATGCCACACCAACAAATGTTCACATGAATAATGA.................................................................................................................................................................................................................................................................................................AAATTCAAGCATGGGGATTGAGAAAGAAAAAAAAGGTGAAAAACATGCAATTGCTTTTAGAATAAAAACACAACTTGACACCTTGGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282573" ref_strand="+" ref_description="SGN-E282573 [cLER-18-H16]">
      <seq>acatattctatcttagactcttttaaagtctttctttttaaaaataatagtattagagaccatgtttggctcttccacttcccaagaaacaacaaatgtcatttctcatcaacattatcaaaccataaaccctaatttttatgcttttcatgatcctcttatcaacatgaatcaagatcatgtccacaatattaattataataagtatcaagattatgacacttcatttcttgatttgtttgctgatggtgatcaagaatattattcccattacacaaactatattgcttcaatttatttataaaatcccttcaagcaacaagagataagtagtagtacctatagtactagtggaaactcatcatcagctagttcatttgatgcctcaccaacacatgttcacatgaataatgaaaatacaagcatagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="34157" stop="32837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33857" g_stop="33444" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33443" i_stop="33155" i_length="289">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33154" g_stop="33137" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="432" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E282573" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33857" e_stop="33444"/>
          <exon e_start="33154" e_stop="33137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATTCTATCAAAGACTCTTTTAAAGTCTTTCTTCTCAAAAATAATAGTATTAGAGACCATGTTTGGCTCTTCCACTTCCCAAGAAACAACAAATGTCATTTCTCATCAACATTATCAAACCATAAACCCTAATTTTTATGCTTTTCATGATCCTCTTATCAACATGAATCAAGATCATGTCCACAATAATAATTATAATAAGTATCAAGATTATGACACTTCATTTCTTGATTTGTTTGTTGATGGTGATCAAGAATATTATTCCAATTACACAAACAATAATGCTTCAATTTATTTAGAAAATCCCTTCAAGCAACAAGAGATAAGTAGTAGTACCTATAGTACTAGTGGAAACTCATCATCAGCTAGTTCATTTGATGCCACACCAACACATGTTCACATGAATAATGAGTAAGTCACTATGTAGACAGTGCTGGAGTTAAGATTTTGAGTTTAAAACATCATTCTGAATAGTAAATAATGTATTCTGACTAAATTATTCATGCTTAAAGTGGATCTAGCTATAACTTTTGAGTGTTATTGAACCTTAAATCGAAGTTGTAGTTCTATCTCTATAATAAGTAGATAGAGTAATTATAATAAGTATTGATAATTATTCAATGATTTTGTTGGTTCATTTATTTATTTATTTATTTATTTATTATTTACTTGTTTGTTTGGTTTTGATTTATTTTAATAGAAATACAAGCATAGGGAT</genome_strand>
        <mrna_strand>ACATATTCTATCTTAGACTCTTTTAAAGTCTTTCTTTTTAAAAATAATAGTATTAGAGACCATGTTTGGCTCTTCCACTTCCCAAGAAACAACAAATGTCATTTCTCATCAACATTATCAAACCATAAACCCTAATTTTTATGCTTTTCATGATCCTCTTATCAACATGAATCAAGATCATGTCCACAATATTAATTATAATAAGTATCAAGATTATGACACTTCATTTCTTGATTTGTTTGCTGATGGTGATCAAGAATATTATTCCCATTACACAAACTATATTGCTTCAATTTATTTATAAAATCCCTTCAAGCAACAAGAGATAAGTAGTAGTACCTATAGTACTAGTGGAAACTCATCATCAGCTAGTTCATTTGATGCCTCACCAACACATGTTCACATGAATAATGA.................................................................................................................................................................................................................................................................................................AAATACAAGCATAGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235016" ref_strand="+" ref_description="SGN-E235016 [cLEL-6-I3](-)">
      <seq>agggatcttttaacagcactggcttggttgtctcatcaaagctgcctagattctccgacatgtacacacttacagtagaaagtgctgatcccaagtccatttccgcgaggccaaaagttgaatttaccaagagcgtcacaaaatggtttgccaaagatggagttctagttgagggcctattctggaaagatgttgaagccttagttaacaattatgctaaggaacccaaaaagagcaaatagattcaatttcaaacattttgataggaatgtggatggcatggatagccaatgagattgaaaacatcggtttatgacttactggattaatatcatctatatcattgttgaagaaaatttaatccaattttcatcatagttttatattttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="45837" stop="44742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45537" g_stop="45393" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45392" i_stop="45288" i_length="105">
            <donor d_prob="0.057" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45287" g_stop="45043" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="390" r_length="245" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="391" polyA_stop="409"/>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E235016" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45537" e_stop="45393"/>
          <exon e_start="45287" e_stop="45043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGATCTTTTAACAGCACTGGCTTGGTTGTCTCATCAAAGCTGCCTAGATTCTCCGACATGTACACACTTACAGTAGAAAGTGCTGATCCCAAGTCCATTTCCGCGAGGCCAAAAGTTGAATTTACCAAGAGCGTCACAAAATGGTCTCTTTCTCCCTCTCATCCTTTTGAAAGAGGAAAATATATAGTACATGTGGGATTTCATAAACTGAATGACTTGCTTCTGACGAGAGAGATATGTTTTTGCAGGTTTGCCGAAGATGGAGTTCTAGTTGAGGGCCTATTCTGGAAAGATGTTGAAGCCTTAGTTAACGATTATGCTAAGGAACACAAAAAGAGCAAATAGATTCAATTTCAAACATTTTGATAGGAATGTGGATGGCATGGATAGCCAATGAGATTGAAAACATCGGTTTATGACTTACTGGATTAATATCATCTATATCATTGTTGAAGAAAATTTAATCCAATTTTCATCATAGTTTTATATTTTG</genome_strand>
        <mrna_strand>AGGGATCTTTTAACAGCACTGGCTTGGTTGTCTCATCAAAGCTGCCTAGATTCTCCGACATGTACACACTTACAGTAGAAAGTGCTGATCCCAAGTCCATTTCCGCGAGGCCAAAAGTTGAATTTACCAAGAGCGTCACAAAATG.........................................................................................................GTTTGCCAAAGATGGAGTTCTAGTTGAGGGCCTATTCTGGAAAGATGTTGAAGCCTTAGTTAACAATTATGCTAAGGAACCCAAAAAGAGCAAATAGATTCAATTTCAAACATTTTGATAGGAATGTGGATGGCATGGATAGCCAATGAGATTGAAAACATCGGTTTATGACTTACTGGATTAATATCATCTATATCATTGTTGAAGAAAATTTAATCCAATTTTCATCATAGTTTTATATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234728" ref_strand="+" ref_description="SGN-E234728 [cLEL-6-I3](-)">
      <seq>gtctcatcaaagctgcctagattctccgacatgtacacactttacagtagaaagtgctgatcccaagtccatttccgcgaggccaaaagttgaatttaccaagagcgtcacaaaatggtttgccaaagatggagttctagttgagggcctattctggaaagatgttgaagccttagttaacaattatgctaaggaacacaaaaagagcaaatagattcaatttcaaacattttgataggaatgtggatggcatggatagccaatgagattgaaaacatcggtttatgacttactggattaatatcatctatatcattgttgaagaaaatttaatccaattttcatcatagttttatattttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="45808" stop="44742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45508" g_stop="45393" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45392" i_stop="45288" i_length="105">
            <donor d_prob="0.057" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45287" g_stop="45043" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="362" r_length="245" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="363" polyA_stop="381"/>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E234728" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45508" e_stop="45393"/>
          <exon e_start="45287" e_stop="45043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCATCAAAGCTGCCTAGATTCTCCGACATGTACACAC-TTACAGTAGAAAGTGCTGATCCCAAGTCCATTTCCGCGAGGCCAAAAGTTGAATTTACCAAGAGCGTCACAAAATGGTCTCTTTCTCCCTCTCATCCTTTTGAAAGAGGAAAATATATAGTACATGTGGGATTTCATAAACTGAATGACTTGCTTCTGACGAGAGAGATATGTTTTTGCAGGTTTGCCGAAGATGGAGTTCTAGTTGAGGGCCTATTCTGGAAAGATGTTGAAGCCTTAGTTAACGATTATGCTAAGGAACACAAAAAGAGCAAATAGATTCAATTTCAAACATTTTGATAGGAATGTGGATGGCATGGATAGCCAATGAGATTGAAAACATCGGTTTATGACTTACTGGATTAATATCATCTATATCATTGTTGAAGAAAATTTAATCCAATTTTCATCATAGTTTTATATTTTG</genome_strand>
        <mrna_strand>GTCTCATCAAAGCTGCCTAGATTCTCCGACATGTACACACTTTACAGTAGAAAGTGCTGATCCCAAGTCCATTTCCGCGAGGCCAAAAGTTGAATTTACCAAGAGCGTCACAAAATG.........................................................................................................GTTTGCCAAAGATGGAGTTCTAGTTGAGGGCCTATTCTGGAAAGATGTTGAAGCCTTAGTTAACAATTATGCTAAGGAACACAAAAAGAGCAAATAGATTCAATTTCAAACATTTTGATAGGAATGTGGATGGCATGGATAGCCAATGAGATTGAAAACATCGGTTTATGACTTACTGGATTAATATCATCTATATCATTGTTGAAGAAAATTTAATCCAATTTTCATCATAGTTTTATATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352181" ref_strand="+" ref_description="SGN-E352181 [cTOS-13-I22]">
      <seq>taccaagagcgtcacaaaatggtttgccaaagatggagttctagttgagggcctattctggaaagatgttgaagccttagttaacaattatgctaaggaacacaaaaagagcaaatagattcaatttcaaacattttgataggaatgtggatggcatggatagccaatgagattgaaaacatcggtttatgacttactggattaatatcatctatatcattgttgaagaaaatttaatccaattttcatcatagttttataaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="45713" stop="44748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45413" g_stop="45393" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45392" i_stop="45288" i_length="105">
            <donor d_prob="0.057" d_score="0.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45287" g_stop="45049" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="260" r_length="239" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="261" polyA_stop="283"/>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E352181" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45413" e_stop="45393"/>
          <exon e_start="45287" e_stop="45049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCAAGAGCGTCACAAAATGGTCTCTTTCTCCCTCTCATCCTTTTGAAAGAGGAAAATATATAGTACATGTGGGATTTCATAAACTGAATGACTTGCTTCTGACGAGAGAGATATGTTTTTGCAGGTTTGCCGAAGATGGAGTTCTAGTTGAGGGCCTATTCTGGAAAGATGTTGAAGCCTTAGTTAACGATTATGCTAAGGAACACAAAAAGAGCAAATAGATTCAATTTCAAACATTTTGATAGGAATGTGGATGGCATGGATAGCCAATGAGATTGAAAACATCGGTTTATGACTTACTGGATTAATATCATCTATATCATTGTTGAAGAAAATTTAATCCAATTTTCATCATAGTTTTAT</genome_strand>
        <mrna_strand>TACCAAGAGCGTCACAAAATG.........................................................................................................GTTTGCCAAAGATGGAGTTCTAGTTGAGGGCCTATTCTGGAAAGATGTTGAAGCCTTAGTTAACAATTATGCTAAGGAACACAAAAAGAGCAAATAGATTCAATTTCAAACATTTTGATAGGAATGTGGATGGCATGGATAGCCAATGAGATTGAAAACATCGGTTTATGACTTACTGGATTAATATCATCTATATCATTGTTGAAGAAAATTTAATCCAATTTTCATCATAGTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235027" ref_strand="+" ref_description="SGN-E235027 [cLEL-6-J24](-)">
      <seq>tgtctcatcaaagctgcctagattctccgacatgacacacttacagagaaagtgctgatcccaagtccatttccgcgaggccaaaagttgaatttaccaagagcgtcacaaaatggtttgccaaagatggagttctagttgagggcctattctggaaagatgttgaagccttagttaacaattatgctaaggaacacaaaaagagcaaatagattcaatttcaaacattttgataggaatgtggatggcatggatagccaatgagattgaaaacatcggtttatgacttactggattaatatcatctatatcattgttgaagaaaatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="45809" stop="44772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45509" g_stop="45393" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45392" i_stop="45288" i_length="105">
            <donor d_prob="0.057" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45287" g_stop="45073" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="330" r_length="215" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="331" polyA_stop="346"/>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E235027" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45509" e_stop="45393"/>
          <exon e_start="45287" e_stop="45073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTCATCAAAGCTGCCTAGATTCTCCGACATGTACACACTTACAGTAGAAAGTGCTGATCCCAAGTCCATTTCCGCGAGGCCAAAAGTTGAATTTACCAAGAGCGTCACAAAATGGTCTCTTTCTCCCTCTCATCCTTTTGAAAGAGGAAAATATATAGTACATGTGGGATTTCATAAACTGAATGACTTGCTTCTGACGAGAGAGATATGTTTTTGCAGGTTTGCCGAAGATGGAGTTCTAGTTGAGGGCCTATTCTGGAAAGATGTTGAAGCCTTAGTTAACGATTATGCTAAGGAACACAAAAAGAGCAAATAGATTCAATTTCAAACATTTTGATAGGAATGTGGATGGCATGGATAGCCAATGAGATTGAAAACATCGGTTTATGACTTACTGGATTAATATCATCTATATCATTGTTGAAGAAAATTTA</genome_strand>
        <mrna_strand>TGTCTCATCAAAGCTGCCTAGATTCTCCGACATG-ACACACTTACAG-AGAAAGTGCTGATCCCAAGTCCATTTCCGCGAGGCCAAAAGTTGAATTTACCAAGAGCGTCACAAAATG.........................................................................................................GTTTGCCAAAGATGGAGTTCTAGTTGAGGGCCTATTCTGGAAAGATGTTGAAGCCTTAGTTAACAATTATGCTAAGGAACACAAAAAGAGCAAATAGATTCAATTTCAAACATTTTGATAGGAATGTGGATGGCATGGATAGCCAATGAGATTGAAAACATCGGTTTATGACTTACTGGATTAATATCATCTATATCATTGTTGAAGAAAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220263" ref_strand="+" ref_description="SGN-E220263 [cLEL-12-D9](-)">
      <seq>caaggatttctttggaaaacgcccgtgatgaaactgctgcttaaccacagggatcttttaacagcactggcttggttgtctcatcaaagctgcctagattctccgacatgtacacacttacagtagaaagtgctgatcccaagtccatttccgcgaggccaaaagttgaatttaccaagagcgtcacaaaatggtttgccgaagatggagttctagttgagggcctattctggaaagatgttgaagccttagttaacgattatgctaaggaacacaaaaagagcaaatagattcaatttcaaacattttgataggaatgtggatggcatggatagccaatgagattgaaaacatcggtttatgacttactggattaatatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="46852" stop="44799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46552" g_stop="46504" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46503" i_stop="45536" i_length="968">
            <donor d_prob="0.857" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45535" g_stop="45393" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="193" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45392" i_stop="45288" i_length="105">
            <donor d_prob="0.057" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45287" g_stop="45096" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="385" r_length="192" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="399"/>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E220263" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46552" e_stop="46504"/>
          <exon e_start="45535" e_stop="45393"/>
          <exon e_start="45287" e_stop="45096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGATTTCTTTGGAAAACGCCCGTGATG-AACTGCTGCTTAACCACAGGCAACTAAATTTTTTCGAAATTTTTGCATGCTTTGTTTGTGCTTTATACTATAGTTTTTGGATTCACATGTTATATATATATAAGCTAATCTAATCTTATAATTCAGTCGTGTGCATGCCTTTCTTCCTCCTTTTTTTTTTTCTTGTTGGAGAATTTTTCATGATCACTGTGAATTGTCTGGCAATGACTGGATTCTAGATTGCTTTCTTGATGATGTTATACTATGAAATGTGCATTCTCCACCATGAGTGAACTTATTATGCATAAAATCTCCTTCAATGGGTGAACTTATTTTTAATATAAAATTAGTGTGGGGTGGAGAATATGCATTTTAATATAAAAAATGTTAATAGTAATTGCATATGATGGTAATGTGGCCACAGCTTCTATAAAAATTGCTATTCCATGATCAACCCACCTTTACCCCTCTAAAGAGCAAATGTCTATCCAACAACTCAGATATCATCCTCTCACAACTTTATTACATCATTGCGTATTTATTTATTTATTCTATGGAAGAATACTTGCACCTATAAATAGGAGTCCGTTTGCCCTGTGTTGGTGTATGAACAAGTGTTACAAATAGGAGTCTCTTTACCTTGTGATGGGGTATGAACAAGTCTCCAATACTATAAAAAATATGTTTATTTGTTAGAAGGTGGTTTATTGTGGTGTTGTTTTAGACTCAACAACTAATGACAGGAGTGCCAAGTAACACACATGTAAATGGGTGAATCTAAACCCAACCCATTAAATACCCATTTTCAGCCGTTATATGGACATGATCAATATTTGACCCGTTTTTAATAAATCATTATCCAACTCATATTTACTTGGACGGGTTGGATGGTTACTTGAGTACTTTATTCCTTTCTTCAAGCACTAATTAGAAGTGTGATGAAGGGAGTACCGTCTTATTGCTCCAGATTCACATAAGACTTAATGAGCTTTGGTTTGTTTATGACAGGGATCTTTTAACAGCACTGGCTTGGTTGTCTCATCAAAGCTGCCTAGATTCTCCGACATGTACACACTTACAGTAGAAAGTGCTGATCCCAAGTCCATTTCCGCGAGGCCAAAAGTTGAATTTACCAAGAGCGTCACAAAATGGTCTCTTTCTCCCTCTCATCCTTTTGAAAGAGGAAAATATATAGTACATGTGGGATTTCATAAACTGAATGACTTGCTTCTGACGAGAGAGATATGTTTTTGCAGGTTTGCCGAAGATGGAGTTCTAGTTGAGGGCCTATTCTGGAAAGATGTTGAAGCCTTAGTTAACGATTATGCTAAGGAACACAAAAAGAGCAAATAGATTCAATTTCAAACATTTTGATAGGAATGTGGATGGCATGGATAGCCAATGAGATTGAAAACATCGGTTTATGACTTACTGGATTAATATCATCT</genome_strand>
        <mrna_strand>CAAGGATTTCTTTGGAAAACGCCCGTGATGAAACTGCTGCTTAACCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCTTTTAACAGCACTGGCTTGGTTGTCTCATCAAAGCTGCCTAGATTCTCCGACATGTACACACTTACAGTAGAAAGTGCTGATCCCAAGTCCATTTCCGCGAGGCCAAAAGTTGAATTTACCAAGAGCGTCACAAAATG.........................................................................................................GTTTGCCGAAGATGGAGTTCTAGTTGAGGGCCTATTCTGGAAAGATGTTGAAGCCTTAGTTAACGATTATGCTAAGGAACACAAAAAGAGCAAATAGATTCAATTTCAAACATTTTGATAGGAATGTGGATGGCATGGATAGCCAATGAGATTGAAAACATCGGTTTATGACTTACTGGATTAATATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623934" ref_strand="+" ref_description="SGN-E623934 [89079]">
      <seq>ccatttaacgacgatctcaatcatgggagagatcgaagaagcatccaccggcgccgacgagatgtctccactgttaccgaacccgaaaaccgacccgattccgtcaacccggactaagtctgttaagaccaaggtcccggagatcaaggtccatctgtataagcaagggaagggtccgatcgacgttttcacgtcgtccttaggtggatgggaacaagaccagctagaggttcgtgatattctagacaaatacgggcttaaatcggtctatgcattcaaaccggagacgggccgaggtgtccctatcagattcaatccccgtaacggccgatcgattctaacctatagagatggatccgagatccatattgatggagaacctaaggactcgttgatccaacctattaccaggatattggttggtgttgcagtgatcaccatattgatagtaatggtgatgaaagaatctccagaatgggccaaaaagttgaacatcactggtggtaatatcccaccatgggtcctggctgctgtggttattctgttcacacgcataaggaagaggactaaggatttctttggaaaacgcccgtgatgaactggtgcttaaccacaggcaactgaattttctcaaaaattttgcatgttttgtttgtgctttatactatagtttttggattcacatgttatatataagctaatctaatcttataatccagtcgtgtgcatgcctttcctccttttatttcttggaaaattttttgttatcaccgtgaatggtctggcaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="49182" stop="46065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48882" g_stop="48498" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46734" g_stop="46316" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="791" r_length="406" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E623934" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48882" e_stop="48498"/>
          <exon e_start="46734" e_stop="46316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAGGTACAATCATCTCACACAATTCCCAATTAAGTATATGGACTGTTATTATTTGTGCTCCGTATCTGTTGTCCCATAATTTGTTTCTTTTTGGACTTTATTGCACCATTCTTTGAGTTGGATGTGATGAAATTCAGCTACATTTCTTTAGCAGTGGTGTCAGGGACAGCTTGCCCGCACCTGGTTCTTGCTGCCTCCCACCAATACAGATACTGGGTAACTCTATGCATCAAGTCTTCCATAGACTGAAAGAAATCACATACTAGTATTTTTTGACCTCCTGGTTATCATTCCACGACTAGTAGTCGCACCCTTGATAATACAATTCAGATAGGTTTTTTATTCACTTAGTAATAATTTTGTTAGCGTGATAGTTATCTAGGAATATAGGATTATAATCCATAATTTGTCATGCAATAAATATTTAATAAGCAATATGTACCGAGGGTTCTATGATTTCTGAATTTTATGTTGGTATCGTTTTCCGCTTATGCAGCCTACCAAACCATAAGTGTCTCTTTAACTCTCTGTGAACTAGGATAGAGTTTGGCCAATTTTGAAGATCTATGAATTAGGAAAACTTATCTCTTTTGAGACATATGGTAATATTGCATGAACGACACGGAGAAGATGAAATTTGGAAAAACATGATGTACTTTTGGGCAAAACATTTGGGATTGACACTAAACTCTAAAGATTGTATCATCAGTTTCTTGGCGATTTAAGTTTGGAGACAAATACAGATGATAGATCTTGAGTCTCTTGGAGGAAGTGGATTTGGCAGCAGGTGTAGGAGTTACCTGTATTTTGCACTTCGTTTTTTCCAACTGGTAAATTTTGGATAAGAGTTATTAGTTGAGGATTGAAACTTGAATTAACGGTGTGAAAAGAAGGCTCAATTGTTGTTCATTGATTGGTCGTTTGAATGGATAAGCTTATATTTTCAAGGTTTCATCTAGTTCTTTCTCTCTTTTAAAGAGCTCTTCCTCAGGCAATTTCCATTTTTTTTTGGTGAGCTTTTTGTGATCAGAGCCTTCACAATACTTAATTTTAACATCAGAACTGACACTGAGTATCTCTGAAAGGAAGCAGAAACTGCCTAGTTGAGGAAGGTTAATGTGCTGAGTTTTGCAGTTTGGCATTTCAATGTCGAAAATTGGAATATCAAAATAGCCGTGCTCTTTGTGTCGATTTGATCGTTCTGTAAACATCAGTAGAAACATGATCTGCAGTTACCCTGTTATATCTTGAATTGTTTGCAAGAGGTTTTCTTGAAATGCAGTGTGAACTTTGAACCTTGTTGAATACTTCCCTGAAACTGTTGAAAGGATATCAAATTATGTTACTGCTGGTTCTCCTGAGCGCTTTCATTTGAAAACAAAAATTGGCAAACAGGGAGAGCTTATCGTAAGATAAATAAATTCTTCTATGAATCCTATCTTTATATTAGTATCCATGTTAAGATAAATAAGGTCCACATTGGGAGGCCCTAACAATGAGAGCATGAAAGGTAACTGAAGGGAACTACTCATGGTGAATGAGATCAAATTGTCCTTTCTATATAAGCAAGTTGTATTTCTCAGTCCAAGAAAGCTGAACTAGATGTGAAAATGTCATAAAATGACTTTACCAAGGCATTCTTGTCACTAAAATGACTTTACCAAGGCGTTCTTGTCACTAAAATGACCATATTTTACATGGTTCTTCACAAAATAGGTTGTTATATGCATAGATGGATTCTAATAGTTTTTCGTCTTTGTTTATAGGACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGAAGAGGACCAAGGATTTCTTTGGAAAACGCCCGTGATGAACTGCTGCTTAACCACAGGCAACTAAATTTTTTCGAAATTTTTGCATGCTTTGTTTGTGCTTTATACTATAGTTTTTGGATTCACATGTTATATATATATAAGCTAATCTAATCTTATAATTCAGTCGTGTGCATGCCTTTCTTCCTCCTTTTTTTTTTTCTTGTTGGAGAATTTTTCATGATCACTGTGAATTGTCTGGCAATGA</genome_strand>
        <mrna_strand>CCATTTAACGACGATCTCAATCATGGGAGAGATCGAAGAAGCATCCACCGGCGCCGACGAGATGTCTCCACTGTTACCGAACCCGAAAACCGACCCGATTCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGTTTTCACGTCGTCCTTAGGTGGATGGGAACAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGCTTAAATCGGTCTATGCATTCAAACCGGAGACGGGCCGAGGTGTCCCTATCAGATTCAATCCCCGTAACGGCCGATCGATTCTAACCTATAGAGATGGATCCGAGATCCATATTGATGGAGAACCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCATATTGATAGTAATGGTGATGAAAGAATCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGTGGTTATTCTGTTCACACGCATAAGGAAGAGGACTAAGGATTTCTTTGGAAAACGCCCGTGATGAACTGGTGCTTAACCACAGGCAACTGAATTTTCTCAAAAATTTTGCATGTTTTGTTTGTGCTTTATACTATAGTTTTTGGATTCACATG---T-TATATATAAGCTAATCTAATCTTATAATCCAGTCGTGTGCATGCC--T-TTCCTCC---TTTTATTTC---TTGGAAAATTTTTTGTTATCACCGTGAATGGTCTGGCAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420794" ref_strand="-" ref_description="SGN-E420794 [STM-31-D8]">
      <seq>attcaacccggagacgggccgaggtgtccctatcagattcaatccccgtaacggccgatcgattctaacctatagagatggatccgagatccatattgatggagaacctaaggactcgttgatccaacctattaccaggatattggttggtgttgcagtgatcaccatattgatagtaatggtgatgaaagaatctccagaatgggccaaaaagttgaacatcactggtggtaatatcccaccatgggtcctggctgctgtggttattctgttcacacgcataaggaagaggactaaggatttctttggaaaacgcccgtgatgaactggtgcttaaccacaggcaactgaattttctcaaaaattttgcatgttttgtttgtgctttatactatagtttttggattcacatgttatatataagctaatctaatcttataatccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="48909" stop="46098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48609" g_stop="48498" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46734" g_stop="46398" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="445" r_length="333" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="446" polyA_stop="457"/>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E420794" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420794" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48609" e_stop="48498"/>
          <exon e_start="46734" e_stop="46398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAGGTACAATCATCTCACACAATTCCCAATTAAGTATATGGACTGTTATTATTTGTGCTCCGTATCTGTTGTCCCATAATTTGTTTCTTTTTGGACTTTATTGCACCATTCTTTGAGTTGGATGTGATGAAATTCAGCTACATTTCTTTAGCAGTGGTGTCAGGGACAGCTTGCCCGCACCTGGTTCTTGCTGCCTCCCACCAATACAGATACTGGGTAACTCTATGCATCAAGTCTTCCATAGACTGAAAGAAATCACATACTAGTATTTTTTGACCTCCTGGTTATCATTCCACGACTAGTAGTCGCACCCTTGATAATACAATTCAGATAGGTTTTTTATTCACTTAGTAATAATTTTGTTAGCGTGATAGTTATCTAGGAATATAGGATTATAATCCATAATTTGTCATGCAATAAATATTTAATAAGCAATATGTACCGAGGGTTCTATGATTTCTGAATTTTATGTTGGTATCGTTTTCCGCTTATGCAGCCTACCAAACCATAAGTGTCTCTTTAACTCTCTGTGAACTAGGATAGAGTTTGGCCAATTTTGAAGATCTATGAATTAGGAAAACTTATCTCTTTTGAGACATATGGTAATATTGCATGAACGACACGGAGAAGATGAAATTTGGAAAAACATGATGTACTTTTGGGCAAAACATTTGGGATTGACACTAAACTCTAAAGATTGTATCATCAGTTTCTTGGCGATTTAAGTTTGGAGACAAATACAGATGATAGATCTTGAGTCTCTTGGAGGAAGTGGATTTGGCAGCAGGTGTAGGAGTTACCTGTATTTTGCACTTCGTTTTTTCCAACTGGTAAATTTTGGATAAGAGTTATTAGTTGAGGATTGAAACTTGAATTAACGGTGTGAAAAGAAGGCTCAATTGTTGTTCATTGATTGGTCGTTTGAATGGATAAGCTTATATTTTCAAGGTTTCATCTAGTTCTTTCTCTCTTTTAAAGAGCTCTTCCTCAGGCAATTTCCATTTTTTTTTGGTGAGCTTTTTGTGATCAGAGCCTTCACAATACTTAATTTTAACATCAGAACTGACACTGAGTATCTCTGAAAGGAAGCAGAAACTGCCTAGTTGAGGAAGGTTAATGTGCTGAGTTTTGCAGTTTGGCATTTCAATGTCGAAAATTGGAATATCAAAATAGCCGTGCTCTTTGTGTCGATTTGATCGTTCTGTAAACATCAGTAGAAACATGATCTGCAGTTACCCTGTTATATCTTGAATTGTTTGCAAGAGGTTTTCTTGAAATGCAGTGTGAACTTTGAACCTTGTTGAATACTTCCCTGAAACTGTTGAAAGGATATCAAATTATGTTACTGCTGGTTCTCCTGAGCGCTTTCATTTGAAAACAAAAATTGGCAAACAGGGAGAGCTTATCGTAAGATAAATAAATTCTTCTATGAATCCTATCTTTATATTAGTATCCATGTTAAGATAAATAAGGTCCACATTGGGAGGCCCTAACAATGAGAGCATGAAAGGTAACTGAAGGGAACTACTCATGGTGAATGAGATCAAATTGTCCTTTCTATATAAGCAAGTTGTATTTCTCAGTCCAAGAAAGCTGAACTAGATGTGAAAATGTCATAAAATGACTTTACCAAGGCATTCTTGTCACTAAAATGACTTTACCAAGGCGTTCTTGTCACTAAAATGACCATATTTTACATGGTTCTTCACAAAATAGGTTGTTATATGCATAGATGGATTCTAATAGTTTTTCGTCTTTGTTTATAGGACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGAAGAGGACCAAGGATTTCTTTGGAAAACGCCCGTGATGAACTGCTGCTTAACCACAGGCAACTAAATTTTTTCGAAATTTTTGCATGCTTTGTTTGTGCTTTATACTATAGTTTTTGGATTCACATGTTATATATATATAAGCTAATCTAATCTTATAATTCA</genome_strand>
        <mrna_strand>ATTCAACCCGGAGACGGGCCGAGGTGTCCCTATCAGATTCAATCCCCGTAACGGCCGATCGATTCTAACCTATAGAGATGGATCCGAGATCCATATTGATGGAGAACCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCATATTGATAGTAATGGTGATGAAAGAATCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGTGGTTATTCTGTTCACACGCATAAGGAAGAGGACTAAGGATTTCTTTGGAAAACGCCCGTGATGAACTGGTGCTTAACCACAGGCAACTGAATTTTCTCAAAAATTTTGCATGTTTTGTTTGTGCTTTATACTATAGTTTTTGGATTCACATG---T-TATATATAAGCTAATCTAATCTTATAATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587374" ref_strand="+" ref_description="SGN-E587374 [78490]">
      <seq>atcgattctaacttatagagatggatccgagatccatattgatggagaacctaaggattcgttgatccaacctattaccaggatattggttggtgttgtagtggtcaccatattgatagtaatggtgatgaaagaatctccagaatgggccaaaaagttgaacatcactggtggtaatatcccaccatgggtcctggctgctgcggttattctgttcacacgcataaggaagaggactaaggatttctttggaaaacgcccgtgaggaactggtgcttaaccacgggcaactaaattttctcgaaatttttgcatgttttgtttgtgctttatgctatagtttttggattcacatgtgatatataagctaatctaatcttataatccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="48852" stop="46098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48552" g_stop="48498" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46734" g_stop="46398" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="388" r_length="333" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="402"/>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E587374" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E587374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48552" e_stop="48498"/>
          <exon e_start="46734" e_stop="46398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAGGTACAATCATCTCACACAATTCCCAATTAAGTATATGGACTGTTATTATTTGTGCTCCGTATCTGTTGTCCCATAATTTGTTTCTTTTTGGACTTTATTGCACCATTCTTTGAGTTGGATGTGATGAAATTCAGCTACATTTCTTTAGCAGTGGTGTCAGGGACAGCTTGCCCGCACCTGGTTCTTGCTGCCTCCCACCAATACAGATACTGGGTAACTCTATGCATCAAGTCTTCCATAGACTGAAAGAAATCACATACTAGTATTTTTTGACCTCCTGGTTATCATTCCACGACTAGTAGTCGCACCCTTGATAATACAATTCAGATAGGTTTTTTATTCACTTAGTAATAATTTTGTTAGCGTGATAGTTATCTAGGAATATAGGATTATAATCCATAATTTGTCATGCAATAAATATTTAATAAGCAATATGTACCGAGGGTTCTATGATTTCTGAATTTTATGTTGGTATCGTTTTCCGCTTATGCAGCCTACCAAACCATAAGTGTCTCTTTAACTCTCTGTGAACTAGGATAGAGTTTGGCCAATTTTGAAGATCTATGAATTAGGAAAACTTATCTCTTTTGAGACATATGGTAATATTGCATGAACGACACGGAGAAGATGAAATTTGGAAAAACATGATGTACTTTTGGGCAAAACATTTGGGATTGACACTAAACTCTAAAGATTGTATCATCAGTTTCTTGGCGATTTAAGTTTGGAGACAAATACAGATGATAGATCTTGAGTCTCTTGGAGGAAGTGGATTTGGCAGCAGGTGTAGGAGTTACCTGTATTTTGCACTTCGTTTTTTCCAACTGGTAAATTTTGGATAAGAGTTATTAGTTGAGGATTGAAACTTGAATTAACGGTGTGAAAAGAAGGCTCAATTGTTGTTCATTGATTGGTCGTTTGAATGGATAAGCTTATATTTTCAAGGTTTCATCTAGTTCTTTCTCTCTTTTAAAGAGCTCTTCCTCAGGCAATTTCCATTTTTTTTTGGTGAGCTTTTTGTGATCAGAGCCTTCACAATACTTAATTTTAACATCAGAACTGACACTGAGTATCTCTGAAAGGAAGCAGAAACTGCCTAGTTGAGGAAGGTTAATGTGCTGAGTTTTGCAGTTTGGCATTTCAATGTCGAAAATTGGAATATCAAAATAGCCGTGCTCTTTGTGTCGATTTGATCGTTCTGTAAACATCAGTAGAAACATGATCTGCAGTTACCCTGTTATATCTTGAATTGTTTGCAAGAGGTTTTCTTGAAATGCAGTGTGAACTTTGAACCTTGTTGAATACTTCCCTGAAACTGTTGAAAGGATATCAAATTATGTTACTGCTGGTTCTCCTGAGCGCTTTCATTTGAAAACAAAAATTGGCAAACAGGGAGAGCTTATCGTAAGATAAATAAATTCTTCTATGAATCCTATCTTTATATTAGTATCCATGTTAAGATAAATAAGGTCCACATTGGGAGGCCCTAACAATGAGAGCATGAAAGGTAACTGAAGGGAACTACTCATGGTGAATGAGATCAAATTGTCCTTTCTATATAAGCAAGTTGTATTTCTCAGTCCAAGAAAGCTGAACTAGATGTGAAAATGTCATAAAATGACTTTACCAAGGCATTCTTGTCACTAAAATGACTTTACCAAGGCGTTCTTGTCACTAAAATGACCATATTTTACATGGTTCTTCACAAAATAGGTTGTTATATGCATAGATGGATTCTAATAGTTTTTCGTCTTTGTTTATAGGACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGAAGAGGACCAAGGATTTCTTTGGAAAACGCCCGTGATGAACTGCTGCTTAACCACAGGCAACTAAATTTTTTCGAAATTTTTGCATGCTTTGTTTGTGCTTTATACTATAGTTTTTGGATTCACATGTTATATATATATAAGCTAATCTAATCTTATAATTCA</genome_strand>
        <mrna_strand>ATCGATTCTAACTTATAGAGATGGATCCGAGATCCATATTGATGGAGAACCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGTAGTGGTCACCATATTGATAGTAATGGTGATGAAAGAATCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACACGCATAAGGAAGAGGACTAAGGATTTCTTTGGAAAACGCCCGTGAGGAACTGGTGCTTAACCACGGGCAACTAAATTTTCTCGAAATTTTTGCATGTTTTGTTTGTGCTTTATGCTATAGTTTTTGGATTCACATGTGAT--ATATA--AGCTAATCTAATCTTATAATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598296" ref_strand="+" ref_description="SGN-E598296 [73966]">
      <seq>ctctcccttttttcctctctgtcatcgccggccatttaacgacgatctcaatcatgggagagatcgaagaagcatccaccggcgccgacgagatgtctccactgttaccgaacccgaaaaccgacccgattccgtcaacccggactaagtctgttaagaccaaggtcccggagatcaaggtccatctgtataagcaagggaagggtccgatcgacgttttcacgtcgtccttaggtggatgggaacaagaccagctagaggttcgtgatattctagacaaatacgggcttaaatcggtctatgcattcaaaccggagacgggccgaggtgtccctatcagattcaatccccgtaacggccgatcgattctaacctatagagatggatccgagatccatattgatggagaacctaaggactcgttgatccaacctattaccaggatattggttggtgttgcagtgatcaccatattgatagtaatggtgatgaaagaatctccagaatgggccaaaaagttgaacatcactggtggtaatatcccaccatgggtcctggctgctgtggttattctgttcacacgcataaggaagaggactaaggatttctttggaaaacgcccgtgatgaactggtgcttaaccacagggcaactgaattttctcagaaatttgcatgttagatgtgctttatactatagttgtggattcacatggtatatataggttaatctaatcttataattccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="49215" stop="46109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48915" g_stop="48498" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46734" g_stop="46400" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="744" r_length="328" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E598296" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48915" e_stop="48498"/>
          <exon e_start="46734" e_stop="46400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAGGTACAATCATCTCACACAATTCCCAATTAAGTATATGGACTGTTATTATTTGTGCTCCGTATCTGTTGTCCCATAATTTGTTTCTTTTTGGACTTTATTGCACCATTCTTTGAGTTGGATGTGATGAAATTCAGCTACATTTCTTTAGCAGTGGTGTCAGGGACAGCTTGCCCGCACCTGGTTCTTGCTGCCTCCCACCAATACAGATACTGGGTAACTCTATGCATCAAGTCTTCCATAGACTGAAAGAAATCACATACTAGTATTTTTTGACCTCCTGGTTATCATTCCACGACTAGTAGTCGCACCCTTGATAATACAATTCAGATAGGTTTTTTATTCACTTAGTAATAATTTTGTTAGCGTGATAGTTATCTAGGAATATAGGATTATAATCCATAATTTGTCATGCAATAAATATTTAATAAGCAATATGTACCGAGGGTTCTATGATTTCTGAATTTTATGTTGGTATCGTTTTCCGCTTATGCAGCCTACCAAACCATAAGTGTCTCTTTAACTCTCTGTGAACTAGGATAGAGTTTGGCCAATTTTGAAGATCTATGAATTAGGAAAACTTATCTCTTTTGAGACATATGGTAATATTGCATGAACGACACGGAGAAGATGAAATTTGGAAAAACATGATGTACTTTTGGGCAAAACATTTGGGATTGACACTAAACTCTAAAGATTGTATCATCAGTTTCTTGGCGATTTAAGTTTGGAGACAAATACAGATGATAGATCTTGAGTCTCTTGGAGGAAGTGGATTTGGCAGCAGGTGTAGGAGTTACCTGTATTTTGCACTTCGTTTTTTCCAACTGGTAAATTTTGGATAAGAGTTATTAGTTGAGGATTGAAACTTGAATTAACGGTGTGAAAAGAAGGCTCAATTGTTGTTCATTGATTGGTCGTTTGAATGGATAAGCTTATATTTTCAAGGTTTCATCTAGTTCTTTCTCTCTTTTAAAGAGCTCTTCCTCAGGCAATTTCCATTTTTTTTTGGTGAGCTTTTTGTGATCAGAGCCTTCACAATACTTAATTTTAACATCAGAACTGACACTGAGTATCTCTGAAAGGAAGCAGAAACTGCCTAGTTGAGGAAGGTTAATGTGCTGAGTTTTGCAGTTTGGCATTTCAATGTCGAAAATTGGAATATCAAAATAGCCGTGCTCTTTGTGTCGATTTGATCGTTCTGTAAACATCAGTAGAAACATGATCTGCAGTTACCCTGTTATATCTTGAATTGTTTGCAAGAGGTTTTCTTGAAATGCAGTGTGAACTTTGAACCTTGTTGAATACTTCCCTGAAACTGTTGAAAGGATATCAAATTATGTTACTGCTGGTTCTCCTGAGCGCTTTCATTTGAAAACAAAAATTGGCAAACAGGGAGAGCTTATCGTAAGATAAATAAATTCTTCTATGAATCCTATCTTTATATTAGTATCCATGTTAAGATAAATAAGGTCCACATTGGGAGGCCCTAACAATGAGAGCATGAAAGGTAACTGAAGGGAACTACTCATGGTGAATGAGATCAAATTGTCCTTTCTATATAAGCAAGTTGTATTTCTCAGTCCAAGAAAGCTGAACTAGATGTGAAAATGTCATAAAATGACTTTACCAAGGCATTCTTGTCACTAAAATGACTTTACCAAGGCGTTCTTGTCACTAAAATGACCATATTTTACATGGTTCTTCACAAAATAGGTTGTTATATGCATAGATGGATTCTAATAGTTTTTCGTCTTTGTTTATAGGACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGAAGAGGACCAAGGATTTCTTTGGAAAACGCCCGTGATGAACTGCTGCTTAACCACA-GGCAACTAAATTTTTTCGAAATTTTTGCATGCTTTGTTTGTGCTTTATACTATAGTTTTTGGATTCACATGTTATATATATATAAGCTAATCTAATCTTATAATT</genome_strand>
        <mrna_strand>CTCTCCC-T-TTTTTCCTCTCTGTCATCGCCGGCCATTTAACGACGATCTCAATCATGGGAGAGATCGAAGAAGCATCCACCGGCGCCGACGAGATGTCTCCACTGTTACCGAACCCGAAAACCGACCCGATTCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGTTTTCACGTCGTCCTTAGGTGGATGGGAACAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGCTTAAATCGGTCTATGCATTCAAACCGGAGACGGGCCGAGGTGTCCCTATCAGATTCAATCCCCGTAACGGCCGATCGATTCTAACCTATAGAGATGGATCCGAGATCCATATTGATGGAGAACCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCATATTGATAGTAATGGTGATGAAAGAATCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGTGGTTATTCTGTTCACACGCATAAGGAAGAGGACTAAGGATTTCTTTGGAAAACGCCCGTGATGAACTGGTGCTTAACCACAGGGCAACTGAATTTTCTC-AGAAATTTGCATG-TTAG-ATGTGCTTTATACTATAG-TTGTGGATTCACATG----GTATATATAGGTTAATCTAATCTTATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237428" ref_strand="+" ref_description="SGN-E237428 [cLEL-7-O11](-)">
      <seq>tgatagtaatggtgatgaaagagtctccagaatgggccaaaaagttgaacatcactggtggtaatatcccaccatgggtcctggctgctgcggttattctgttcacgcgcataaggaagaggaccaaggatttctttggaaaacgcccgtgatgaactgctgcttaaccacaggcaactaaattttttcgaaatttttgcatgctttgtttgtgctttatactatagtttttggattcacatgttatatatatataagctaatctaatcttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="46976" stop="46102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46676" g_stop="46403" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="275" polyA_stop="291"/>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E237428" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46676" e_stop="46403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGAAGAGGACCAAGGATTTCTTTGGAAAACGCCCGTGATGAACTGCTGCTTAACCACAGGCAACTAAATTTTTTCGAAATTTTTGCATGCTTTGTTTGTGCTTTATACTATAGTTTTTGGATTCACATGTTATATATATATAAGCTAATCTAATCTTATA</genome_strand>
        <mrna_strand>TGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGAAGAGGACCAAGGATTTCTTTGGAAAACGCCCGTGATGAACTGCTGCTTAACCACAGGCAACTAAATTTTTTCGAAATTTTTGCATGCTTTGTTTGTGCTTTATACTATAGTTTTTGGATTCACATGTTATATATATATAAGCTAATCTAATCTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237032" ref_strand="+" ref_description="SGN-E237032 [cLEL-7-O11](-)">
      <seq>gtctccagaatgggccaaaaagttgaacatccactggtggtaatatccccccatgggtcctggctgctgcggttattctgttcacgcgcataaggaagaggaccaaggatttctttggaaaccgcccgtgatgaactgctgcttaaccacaggcaactaaattttttcgaaatttttgcatgctttgtttgtgctttatactatagtttttggattcacatgttatatatatataagctaatctaatcttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="46954" stop="46102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46654" g_stop="46403" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="254" polyA_stop="270"/>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E237032" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46654" e_stop="46403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCCAGAATGGGCCAAAAAGTTGAACAT-CACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGAAGAGGACCAAGGATTTCTTTGGAAAACGCCCGTGATGAACTGCTGCTTAACCACAGGCAACTAAATTTTTTCGAAATTTTTGCATGCTTTGTTTGTGCTTTATACTATAGTTTTTGGATTCACATGTTATATATATATAAGCTAATCTAATCTTATA</genome_strand>
        <mrna_strand>GTCTCCAGAATGGGCCAAAAAGTTGAACATCCACTGGTGGTAATATCCCCCCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGAAGAGGACCAAGGATTTCTTTGGAAACCGCCCGTGATGAACTGCTGCTTAACCACAGGCAACTAAATTTTTTCGAAATTTTTGCATGCTTTGTTTGTGCTTTATACTATAGTTTTTGGATTCACATGTTATATATATATAAGCTAATCTAATCTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592789" ref_strand="-" ref_description="SGN-E592789 [36005]">
      <seq>aaggggaagggtcccgatcgaacgaattcaccgtcgtccttagtggatggggaacaagaccagctagaggttcgtgatattctagacaaatacgggcttaaatcggtctatgcattcaaaccggagacgggccgaggtgtccctatcagattcaatccccgtaacggccgatcgattctaacttatagagatggatccgagatccatattgatggagaacctaaggattcgttgatccaacctattaccaggatattggttggtgttgtagtggtcaccatattgatagtaatggtgatgaaagaatctccagaatgggccaaaaagttgaacatcactggtggtaatatcccaccatgggtcctggctgctgcggttattctgttcacacgcataaggaagaggactaaggatttctttggaaaacgcccgtgaggaactggtgcttaaccacgggcaactaaattttctcgcaatttttgcatgttttgtttgtgctttatgctatagtttttggattcanaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="48971" stop="46136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48719" g_stop="48498" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46734" g_stop="46428" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="532" r_length="307" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E592789" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E592789" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48719" e_stop="48498"/>
          <exon e_start="46734" e_stop="46428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGGAAGGGT-CCGATCG-ACGAATTCA-CGTCGTCCTTAGGTGGAT-TTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAGGTACAATCATCTCACACAATTCCCAATTAAGTATATGGACTGTTATTATTTGTGCTCCGTATCTGTTGTCCCATAATTTGTTTCTTTTTGGACTTTATTGCACCATTCTTTGAGTTGGATGTGATGAAATTCAGCTACATTTCTTTAGCAGTGGTGTCAGGGACAGCTTGCCCGCACCTGGTTCTTGCTGCCTCCCACCAATACAGATACTGGGTAACTCTATGCATCAAGTCTTCCATAGACTGAAAGAAATCACATACTAGTATTTTTTGACCTCCTGGTTATCATTCCACGACTAGTAGTCGCACCCTTGATAATACAATTCAGATAGGTTTTTTATTCACTTAGTAATAATTTTGTTAGCGTGATAGTTATCTAGGAATATAGGATTATAATCCATAATTTGTCATGCAATAAATATTTAATAAGCAATATGTACCGAGGGTTCTATGATTTCTGAATTTTATGTTGGTATCGTTTTCCGCTTATGCAGCCTACCAAACCATAAGTGTCTCTTTAACTCTCTGTGAACTAGGATAGAGTTTGGCCAATTTTGAAGATCTATGAATTAGGAAAACTTATCTCTTTTGAGACATATGGTAATATTGCATGAACGACACGGAGAAGATGAAATTTGGAAAAACATGATGTACTTTTGGGCAAAACATTTGGGATTGACACTAAACTCTAAAGATTGTATCATCAGTTTCTTGGCGATTTAAGTTTGGAGACAAATACAGATGATAGATCTTGAGTCTCTTGGAGGAAGTGGATTTGGCAGCAGGTGTAGGAGTTACCTGTATTTTGCACTTCGTTTTTTCCAACTGGTAAATTTTGGATAAGAGTTATTAGTTGAGGATTGAAACTTGAATTAACGGTGTGAAAAGAAGGCTCAATTGTTGTTCATTGATTGGTCGTTTGAATGGATAAGCTTATATTTTCAAGGTTTCATCTAGTTCTTTCTCTCTTTTAAAGAGCTCTTCCTCAGGCAATTTCCATTTTTTTTTGGTGAGCTTTTTGTGATCAGAGCCTTCACAATACTTAATTTTAACATCAGAACTGACACTGAGTATCTCTGAAAGGAAGCAGAAACTGCCTAGTTGAGGAAGGTTAATGTGCTGAGTTTTGCAGTTTGGCATTTCAATGTCGAAAATTGGAATATCAAAATAGCCGTGCTCTTTGTGTCGATTTGATCGTTCTGTAAACATCAGTAGAAACATGATCTGCAGTTACCCTGTTATATCTTGAATTGTTTGCAAGAGGTTTTCTTGAAATGCAGTGTGAACTTTGAACCTTGTTGAATACTTCCCTGAAACTGTTGAAAGGATATCAAATTATGTTACTGCTGGTTCTCCTGAGCGCTTTCATTTGAAAACAAAAATTGGCAAACAGGGAGAGCTTATCGTAAGATAAATAAATTCTTCTATGAATCCTATCTTTATATTAGTATCCATGTTAAGATAAATAAGGTCCACATTGGGAGGCCCTAACAATGAGAGCATGAAAGGTAACTGAAGGGAACTACTCATGGTGAATGAGATCAAATTGTCCTTTCTATATAAGCAAGTTGTATTTCTCAGTCCAAGAAAGCTGAACTAGATGTGAAAATGTCATAAAATGACTTTACCAAGGCATTCTTGTCACTAAAATGACTTTACCAAGGCGTTCTTGTCACTAAAATGACCATATTTTACATGGTTCTTCACAAAATAGGTTGTTATATGCATAGATGGATTCTAATAGTTTTTCGTCTTTGTTTATAGGACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGAAGAGGACCAAGGATTTCTTTGGAAAACGCCCGTGATGAACTGCTGCTTAACCACAGGCAACTAAATTTTTTCGAAATTTTTGCATGCTTTGTTTGTGCTTTATACTATAGTTTTTGGATTCACATGTTATAT</genome_strand>
        <mrna_strand>AAGGGGAAGGGTCCCGATCGAACGAATTCACCGTCGTCCTTA-GTGGATGGGGAACAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGCTTAAATCGGTCTATGCATTCAAACCGGAGACGGGCCGAGGTGTCCCTATCAGATTCAATCCCCGTAACGGCCGATCGATTCTAACTTATAGAGATGGATCCGAGATCCATATTGATGGAGAACCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGTAGTGGTCACCATATTGATAGTAATGGTGATGAAAGAATCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACACGCATAAGGAAGAGGACTAAGGATTTCTTTGGAAAACGCCCGTGAGGAACTGGTGCTTAACCACGGGCAACTAAATTTTCTCGCAATTTTTGCATGTTTTGTTTGTGCTTTATGCTATAGTTTTTGGATTCANAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420793" ref_strand="+" ref_description="SGN-E420793 [STM-31-D8]">
      <seq>tcaaaaaaagcttttaaattgacgcctccaccccccctccgccgaattctctcccttttttcctctctgtcatcgccggccatttaacgacgatctcaatcatgggagagatcgaagaagcatccaccggcgccgacgagatgtctccactgttaccgaacccgaaaaccgacccgattccgtcaacccggactaagtctgttaagaccaaggtcccggagatcaaggtccatctgtataagcaagggaagggtccgatcgacgttttcacgtcgtccttaggtggatgggaacaagaccagctagaggttcgtgatattctagacaaatacgggcttaaatcggtctatgcattcaaaccggagacgggccgaggtgtccctatcagattcaatccccgtaacggccgatcgattctaacctatagagatggatccgagatccatattgatggagaacctaaggactcgttgatccaacctattaccaggatattggttggtgttgcagtgatcaccatattgatagtaatggtgatgaaagaatctccagaatgggccaaaaaagtgaacatcactggtggtaatatcccaccatgggtcctggctgctgtggttattctgttcacacgcataggaagaggactaaggatttctttggaaaacgcccgtgatgaactggtgcttaccacaagcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="49274" stop="46198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48917" g_stop="48498" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="464" r_length="418" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46734" g_stop="46498" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="699" r_length="235" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E420793" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48917" e_stop="48498"/>
          <exon e_start="46734" e_stop="46498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAGGTACAATCATCTCACACAATTCCCAATTAAGTATATGGACTGTTATTATTTGTGCTCCGTATCTGTTGTCCCATAATTTGTTTCTTTTTGGACTTTATTGCACCATTCTTTGAGTTGGATGTGATGAAATTCAGCTACATTTCTTTAGCAGTGGTGTCAGGGACAGCTTGCCCGCACCTGGTTCTTGCTGCCTCCCACCAATACAGATACTGGGTAACTCTATGCATCAAGTCTTCCATAGACTGAAAGAAATCACATACTAGTATTTTTTGACCTCCTGGTTATCATTCCACGACTAGTAGTCGCACCCTTGATAATACAATTCAGATAGGTTTTTTATTCACTTAGTAATAATTTTGTTAGCGTGATAGTTATCTAGGAATATAGGATTATAATCCATAATTTGTCATGCAATAAATATTTAATAAGCAATATGTACCGAGGGTTCTATGATTTCTGAATTTTATGTTGGTATCGTTTTCCGCTTATGCAGCCTACCAAACCATAAGTGTCTCTTTAACTCTCTGTGAACTAGGATAGAGTTTGGCCAATTTTGAAGATCTATGAATTAGGAAAACTTATCTCTTTTGAGACATATGGTAATATTGCATGAACGACACGGAGAAGATGAAATTTGGAAAAACATGATGTACTTTTGGGCAAAACATTTGGGATTGACACTAAACTCTAAAGATTGTATCATCAGTTTCTTGGCGATTTAAGTTTGGAGACAAATACAGATGATAGATCTTGAGTCTCTTGGAGGAAGTGGATTTGGCAGCAGGTGTAGGAGTTACCTGTATTTTGCACTTCGTTTTTTCCAACTGGTAAATTTTGGATAAGAGTTATTAGTTGAGGATTGAAACTTGAATTAACGGTGTGAAAAGAAGGCTCAATTGTTGTTCATTGATTGGTCGTTTGAATGGATAAGCTTATATTTTCAAGGTTTCATCTAGTTCTTTCTCTCTTTTAAAGAGCTCTTCCTCAGGCAATTTCCATTTTTTTTTGGTGAGCTTTTTGTGATCAGAGCCTTCACAATACTTAATTTTAACATCAGAACTGACACTGAGTATCTCTGAAAGGAAGCAGAAACTGCCTAGTTGAGGAAGGTTAATGTGCTGAGTTTTGCAGTTTGGCATTTCAATGTCGAAAATTGGAATATCAAAATAGCCGTGCTCTTTGTGTCGATTTGATCGTTCTGTAAACATCAGTAGAAACATGATCTGCAGTTACCCTGTTATATCTTGAATTGTTTGCAAGAGGTTTTCTTGAAATGCAGTGTGAACTTTGAACCTTGTTGAATACTTCCCTGAAACTGTTGAAAGGATATCAAATTATGTTACTGCTGGTTCTCCTGAGCGCTTTCATTTGAAAACAAAAATTGGCAAACAGGGAGAGCTTATCGTAAGATAAATAAATTCTTCTATGAATCCTATCTTTATATTAGTATCCATGTTAAGATAAATAAGGTCCACATTGGGAGGCCCTAACAATGAGAGCATGAAAGGTAACTGAAGGGAACTACTCATGGTGAATGAGATCAAATTGTCCTTTCTATATAAGCAAGTTGTATTTCTCAGTCCAAGAAAGCTGAACTAGATGTGAAAATGTCATAAAATGACTTTACCAAGGCATTCTTGTCACTAAAATGACTTTACCAAGGCGTTCTTGTCACTAAAATGACCATATTTTACATGGTTCTTCACAAAATAGGTTGTTATATGCATAGATGGATTCTAATAGTTTTTCGTCTTTGTTTATAGGACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGAAGAGGACCAAGGATTTCTTTGGAAAACGCCCGTGATGAACTGCTGCTTAACCACAGGCAACT</genome_strand>
        <mrna_strand>TTCTCTCCC-T-TTTTTCCTCTCTGTCATCGCCGGCCATTTAACGACGATCTCAATCATGGGAGAGATCGAAGAAGCATCCACCGGCGCCGACGAGATGTCTCCACTGTTACCGAACCCGAAAACCGACCCGATTCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGTTTTCACGTCGTCCTTAGGTGGATGGGAACAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGCTTAAATCGGTCTATGCATTCAAACCGGAGACGGGCCGAGGTGTCCCTATCAGATTCAATCCCCGTAACGGCCGATCGATTCTAACCTATAGAGATGGATCCGAGATCCATATTGATGGAGAACCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCATATTGATAGTAATGGTGATGAAAGAATCTCCAGAATGGGCCAAAAAAGTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGTGGTTATTCTGTTCACACGCAT-AGGAAGAGGACTAAGGATTTCTTTGGAAAACGCCCGTGATGAACTGGTGCTT-ACCACAAGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594808" ref_strand="+" ref_description="SGN-E594808 [38068]">
      <seq>ccgatgtgtacctatcagattcaatccccggtaacggcgatcgattctaacctatagagatggatccgagatccatattgatggagaacctaaggactcgttgatccaacctattaccaggatattggttggtgttgcagtgatcaccatattgatagtactggtgatgaaagaatctccagaatgggccaaaaagttgaacatcactggtggtaatatcccaccatgggtcctggctgctgtggttattctgttcacacgcataaggaagaggactaaggatttctttggaaaacgcccgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="48891" stop="46225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48591" g_stop="48498" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46734" g_stop="46525" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="304" r_length="210" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E594808" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E594808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48591" e_stop="48498"/>
          <exon e_start="46734" e_stop="46525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAGGTGTTCCTATCAGATTCAATCCCC-GTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAGGTACAATCATCTCACACAATTCCCAATTAAGTATATGGACTGTTATTATTTGTGCTCCGTATCTGTTGTCCCATAATTTGTTTCTTTTTGGACTTTATTGCACCATTCTTTGAGTTGGATGTGATGAAATTCAGCTACATTTCTTTAGCAGTGGTGTCAGGGACAGCTTGCCCGCACCTGGTTCTTGCTGCCTCCCACCAATACAGATACTGGGTAACTCTATGCATCAAGTCTTCCATAGACTGAAAGAAATCACATACTAGTATTTTTTGACCTCCTGGTTATCATTCCACGACTAGTAGTCGCACCCTTGATAATACAATTCAGATAGGTTTTTTATTCACTTAGTAATAATTTTGTTAGCGTGATAGTTATCTAGGAATATAGGATTATAATCCATAATTTGTCATGCAATAAATATTTAATAAGCAATATGTACCGAGGGTTCTATGATTTCTGAATTTTATGTTGGTATCGTTTTCCGCTTATGCAGCCTACCAAACCATAAGTGTCTCTTTAACTCTCTGTGAACTAGGATAGAGTTTGGCCAATTTTGAAGATCTATGAATTAGGAAAACTTATCTCTTTTGAGACATATGGTAATATTGCATGAACGACACGGAGAAGATGAAATTTGGAAAAACATGATGTACTTTTGGGCAAAACATTTGGGATTGACACTAAACTCTAAAGATTGTATCATCAGTTTCTTGGCGATTTAAGTTTGGAGACAAATACAGATGATAGATCTTGAGTCTCTTGGAGGAAGTGGATTTGGCAGCAGGTGTAGGAGTTACCTGTATTTTGCACTTCGTTTTTTCCAACTGGTAAATTTTGGATAAGAGTTATTAGTTGAGGATTGAAACTTGAATTAACGGTGTGAAAAGAAGGCTCAATTGTTGTTCATTGATTGGTCGTTTGAATGGATAAGCTTATATTTTCAAGGTTTCATCTAGTTCTTTCTCTCTTTTAAAGAGCTCTTCCTCAGGCAATTTCCATTTTTTTTTGGTGAGCTTTTTGTGATCAGAGCCTTCACAATACTTAATTTTAACATCAGAACTGACACTGAGTATCTCTGAAAGGAAGCAGAAACTGCCTAGTTGAGGAAGGTTAATGTGCTGAGTTTTGCAGTTTGGCATTTCAATGTCGAAAATTGGAATATCAAAATAGCCGTGCTCTTTGTGTCGATTTGATCGTTCTGTAAACATCAGTAGAAACATGATCTGCAGTTACCCTGTTATATCTTGAATTGTTTGCAAGAGGTTTTCTTGAAATGCAGTGTGAACTTTGAACCTTGTTGAATACTTCCCTGAAACTGTTGAAAGGATATCAAATTATGTTACTGCTGGTTCTCCTGAGCGCTTTCATTTGAAAACAAAAATTGGCAAACAGGGAGAGCTTATCGTAAGATAAATAAATTCTTCTATGAATCCTATCTTTATATTAGTATCCATGTTAAGATAAATAAGGTCCACATTGGGAGGCCCTAACAATGAGAGCATGAAAGGTAACTGAAGGGAACTACTCATGGTGAATGAGATCAAATTGTCCTTTCTATATAAGCAAGTTGTATTTCTCAGTCCAAGAAAGCTGAACTAGATGTGAAAATGTCATAAAATGACTTTACCAAGGCATTCTTGTCACTAAAATGACTTTACCAAGGCGTTCTTGTCACTAAAATGACCATATTTTACATGGTTCTTCACAAAATAGGTTGTTATATGCATAGATGGATTCTAATAGTTTTTCGTCTTTGTTTATAGGACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGAAGAGGACCAAGGATTTCTTTGGAAAACGCCCGTGA</genome_strand>
        <mrna_strand>CCGATGTGTACCTATCAGATTCAATCCCCGGTAACGG-CGATCGATTCTAACCTATAGAGATGGATCCGAGATCCATATTGATGGAGAACCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCATATTGATAGTACTGGTGATGAAAGAATCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGTGGTTATTCTGTTCACACGCATAAGGAAGAGGACTAAGGATTTCTTTGGAAAACGCCCGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594446" ref_strand="+" ref_description="SGN-E594446 [37698]">
      <seq>ccgaattctctcccttttttcctctctgtcatcgccggccacttaacgacgatctcaatcatgggagagatcgaagaagcatccactggcgccgacgagatgtctccactgttatcgaacccgaaaaccgacccgattccgtcaacccggactaagtctgttgagaccaaggtcccggagatcaaggtccatctgtataagcaagggaagggtccgatcgacgaattcacgtcgtccttaggtggatgggaacaagaccagctagaggttcgtgatattctagacaaatacgggcttaaatcggtctatgcattcaaaccggagacgggccgaggtgtccctatcagattcaatccccgtaacggccgatcgattctaacttatagagatggatccgagatccatattgatggagaacctaaggattcgttgatccaacctattaccaggatattggttggtgttgtagtggtcaccatattgatagtaatggtgatgaaagaatctccagaatgggccaaaaagttgaacatcactggtggtaatatccaccatgggctctggctgctgcggttattctgttcacacgcataaggaagaggactaacgatttctttggaaaacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="49217" stop="46231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48923" g_stop="48498" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46734" g_stop="46531" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="626" r_length="203" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E594446" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E594446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48923" e_stop="48498"/>
          <exon e_start="46734" e_stop="46531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTCTTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAGGTACAATCATCTCACACAATTCCCAATTAAGTATATGGACTGTTATTATTTGTGCTCCGTATCTGTTGTCCCATAATTTGTTTCTTTTTGGACTTTATTGCACCATTCTTTGAGTTGGATGTGATGAAATTCAGCTACATTTCTTTAGCAGTGGTGTCAGGGACAGCTTGCCCGCACCTGGTTCTTGCTGCCTCCCACCAATACAGATACTGGGTAACTCTATGCATCAAGTCTTCCATAGACTGAAAGAAATCACATACTAGTATTTTTTGACCTCCTGGTTATCATTCCACGACTAGTAGTCGCACCCTTGATAATACAATTCAGATAGGTTTTTTATTCACTTAGTAATAATTTTGTTAGCGTGATAGTTATCTAGGAATATAGGATTATAATCCATAATTTGTCATGCAATAAATATTTAATAAGCAATATGTACCGAGGGTTCTATGATTTCTGAATTTTATGTTGGTATCGTTTTCCGCTTATGCAGCCTACCAAACCATAAGTGTCTCTTTAACTCTCTGTGAACTAGGATAGAGTTTGGCCAATTTTGAAGATCTATGAATTAGGAAAACTTATCTCTTTTGAGACATATGGTAATATTGCATGAACGACACGGAGAAGATGAAATTTGGAAAAACATGATGTACTTTTGGGCAAAACATTTGGGATTGACACTAAACTCTAAAGATTGTATCATCAGTTTCTTGGCGATTTAAGTTTGGAGACAAATACAGATGATAGATCTTGAGTCTCTTGGAGGAAGTGGATTTGGCAGCAGGTGTAGGAGTTACCTGTATTTTGCACTTCGTTTTTTCCAACTGGTAAATTTTGGATAAGAGTTATTAGTTGAGGATTGAAACTTGAATTAACGGTGTGAAAAGAAGGCTCAATTGTTGTTCATTGATTGGTCGTTTGAATGGATAAGCTTATATTTTCAAGGTTTCATCTAGTTCTTTCTCTCTTTTAAAGAGCTCTTCCTCAGGCAATTTCCATTTTTTTTTGGTGAGCTTTTTGTGATCAGAGCCTTCACAATACTTAATTTTAACATCAGAACTGACACTGAGTATCTCTGAAAGGAAGCAGAAACTGCCTAGTTGAGGAAGGTTAATGTGCTGAGTTTTGCAGTTTGGCATTTCAATGTCGAAAATTGGAATATCAAAATAGCCGTGCTCTTTGTGTCGATTTGATCGTTCTGTAAACATCAGTAGAAACATGATCTGCAGTTACCCTGTTATATCTTGAATTGTTTGCAAGAGGTTTTCTTGAAATGCAGTGTGAACTTTGAACCTTGTTGAATACTTCCCTGAAACTGTTGAAAGGATATCAAATTATGTTACTGCTGGTTCTCCTGAGCGCTTTCATTTGAAAACAAAAATTGGCAAACAGGGAGAGCTTATCGTAAGATAAATAAATTCTTCTATGAATCCTATCTTTATATTAGTATCCATGTTAAGATAAATAAGGTCCACATTGGGAGGCCCTAACAATGAGAGCATGAAAGGTAACTGAAGGGAACTACTCATGGTGAATGAGATCAAATTGTCCTTTCTATATAAGCAAGTTGTATTTCTCAGTCCAAGAAAGCTGAACTAGATGTGAAAATGTCATAAAATGACTTTACCAAGGCATTCTTGTCACTAAAATGACTTTACCAAGGCGTTCTTGTCACTAAAATGACCATATTTTACATGGTTCTTCACAAAATAGGTTGTTATATGCATAGATGGATTCTAATAGTTTTTCGTCTTTGTTTATAGGACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGAAGAGGACCAAGGATTTCTTTGGAAAACGC</genome_strand>
        <mrna_strand>CCG-AATTCTCTCCCTT-TT-TTCCTCTCTGTCATCGCCGGCCACTTAACGACGATCTCAATCATGGGAGAGATCGAAGAAGCATCCACTGGCGCCGACGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATTCCGTCAACCCGGACTAAGTCTGTTGAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATGGGAACAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGCTTAAATCGGTCTATGCATTCAAACCGGAGACGGGCCGAGGTGTCCCTATCAGATTCAATCCCCGTAACGGCCGATCGATTCTAACTTATAGAGATGGATCCGAGATCCATATTGATGGAGAACCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGTAGTGGTCACCATATTGATAGTAATGGTGATGAAAGAATCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATAT-CCACCATGGGCTCTGGCTGCTGCGGTTATTCTGTTCACACGCATAAGGAAGAGGACTAACGATTTCTTTGGAAAACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581892" ref_strand="+" ref_description="SGN-E581892 [7523]">
      <seq>ggtccgatcgacgaattcacgtcgtccttcagtggatgtggaacaagcacagctagaggttcgtgatattctaacaaatacgggcttaaatcggtctatgcattcaaacccggagacgggccgaaggtgtccctatcagattcaatcccccgtaacgggcgatcgattctaacttatagagatggatccgagatcccatattgatggagaactaagatcgtgatccaactattacagatatggttggtgttgtagtggtcaccatattgatagtaatggtgatgaaagaatctccagaatgggccaaaaagttgaacatcactggtggtaatatccaccatgggtcctggctgctgcggttattctgttcacacgcataaggaagaggacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="49010" stop="46250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48710" g_stop="48498" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.957" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46734" g_stop="46551" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="392" r_length="177" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E581892" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48710" e_stop="48498"/>
          <exon e_start="46734" e_stop="46551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGAT-TTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAA-CCGGAGACTGGCCG-AGGTGTTCCTATCAGATTCAAT-CCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGAT-CCATATTGATGGAGAACCTAAGGTACAATCATCTCACACAATTCCCAATTAAGTATATGGACTGTTATTATTTGTGCTCCGTATCTGTTGTCCCATAATTTGTTTCTTTTTGGACTTTATTGCACCATTCTTTGAGTTGGATGTGATGAAATTCAGCTACATTTCTTTAGCAGTGGTGTCAGGGACAGCTTGCCCGCACCTGGTTCTTGCTGCCTCCCACCAATACAGATACTGGGTAACTCTATGCATCAAGTCTTCCATAGACTGAAAGAAATCACATACTAGTATTTTTTGACCTCCTGGTTATCATTCCACGACTAGTAGTCGCACCCTTGATAATACAATTCAGATAGGTTTTTTATTCACTTAGTAATAATTTTGTTAGCGTGATAGTTATCTAGGAATATAGGATTATAATCCATAATTTGTCATGCAATAAATATTTAATAAGCAATATGTACCGAGGGTTCTATGATTTCTGAATTTTATGTTGGTATCGTTTTCCGCTTATGCAGCCTACCAAACCATAAGTGTCTCTTTAACTCTCTGTGAACTAGGATAGAGTTTGGCCAATTTTGAAGATCTATGAATTAGGAAAACTTATCTCTTTTGAGACATATGGTAATATTGCATGAACGACACGGAGAAGATGAAATTTGGAAAAACATGATGTACTTTTGGGCAAAACATTTGGGATTGACACTAAACTCTAAAGATTGTATCATCAGTTTCTTGGCGATTTAAGTTTGGAGACAAATACAGATGATAGATCTTGAGTCTCTTGGAGGAAGTGGATTTGGCAGCAGGTGTAGGAGTTACCTGTATTTTGCACTTCGTTTTTTCCAACTGGTAAATTTTGGATAAGAGTTATTAGTTGAGGATTGAAACTTGAATTAACGGTGTGAAAAGAAGGCTCAATTGTTGTTCATTGATTGGTCGTTTGAATGGATAAGCTTATATTTTCAAGGTTTCATCTAGTTCTTTCTCTCTTTTAAAGAGCTCTTCCTCAGGCAATTTCCATTTTTTTTTGGTGAGCTTTTTGTGATCAGAGCCTTCACAATACTTAATTTTAACATCAGAACTGACACTGAGTATCTCTGAAAGGAAGCAGAAACTGCCTAGTTGAGGAAGGTTAATGTGCTGAGTTTTGCAGTTTGGCATTTCAATGTCGAAAATTGGAATATCAAAATAGCCGTGCTCTTTGTGTCGATTTGATCGTTCTGTAAACATCAGTAGAAACATGATCTGCAGTTACCCTGTTATATCTTGAATTGTTTGCAAGAGGTTTTCTTGAAATGCAGTGTGAACTTTGAACCTTGTTGAATACTTCCCTGAAACTGTTGAAAGGATATCAAATTATGTTACTGCTGGTTCTCCTGAGCGCTTTCATTTGAAAACAAAAATTGGCAAACAGGGAGAGCTTATCGTAAGATAAATAAATTCTTCTATGAATCCTATCTTTATATTAGTATCCATGTTAAGATAAATAAGGTCCACATTGGGAGGCCCTAACAATGAGAGCATGAAAGGTAACTGAAGGGAACTACTCATGGTGAATGAGATCAAATTGTCCTTTCTATATAAGCAAGTTGTATTTCTCAGTCCAAGAAAGCTGAACTAGATGTGAAAATGTCATAAAATGACTTTACCAAGGCATTCTTGTCACTAAAATGACTTTACCAAGGCGTTCTTGTCACTAAAATGACCATATTTTACATGGTTCTTCACAAAATAGGTTGTTATATGCATAGATGGATTCTAATAGTTTTTCGTCTTTGTTTATAGGACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGAAGAGGACCA</genome_strand>
        <mrna_strand>GGTCCGATCGACGAATTCACGTCGTCCTTCAGTGGATGTGGAACAAGCACAGCTAGAGGTTCGTGATATTCTA-ACAAATACGGGCTTAAATCGGTCTATGCATTCAAACCCGGAGACGGGCCGAAGGTGTCCCTATCAGATTCAATCCCCCGTAACGGGCGATCGATTCTAACTTATAGAGATGGATCCGAGATCCCATATTGATGGAGAA-CTAA-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-TCG-TGATCCAA-CTATTA-CA-GATA-TGGTTGGTGTTGTAGTGGTCACCATATTGATAGTAATGGTGATGAAAGAATCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATAT-CCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACACGCATAAGGAAGAGGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581335" ref_strand="+" ref_description="SGN-E581335 [6578]">
      <seq>cccccctccgccgaattctctcccttttttcctctctgtcatcgccggccatttaacgacgatctcaatcatgggagagatcgaagaagcatccaccggcgccgacgagatgtctccactgttaccgaacccgaaaacgacccgattccgtcaacccggactaagtctgttaagaccaaggtcccggagatcaaggtccatctgtataagcaagggaagggtccgatcgacgttttcacgtcgtccttaggtggatgggaacaagaccagctagaggttcgtgatattctagacaaatacgggcttaaatcggtctatgcattcaaaccggagacgggccgaggtgtccctatcagattcaatccccgtaacggccgatcgattctaacctatagagatggatccgagatccatattgatggagaacctaaggactcgttgatccaacctattaccaggatattggttggtgttgcagtgatcaccatattgatagtaatggtgatgaaagaatctccagaatgggccaaaaagttgaacatcactggtggtaatatcccagcatgggtcctgggctgctgtggttatcctgttcacacgcataaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="49217" stop="46261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48933" g_stop="48498" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46734" g_stop="46560" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="608" r_length="176" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E581335" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48933" e_stop="48498"/>
          <exon e_start="46734" e_stop="46560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCCCCCGCGGCTCTTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAGGTACAATCATCTCACACAATTCCCAATTAAGTATATGGACTGTTATTATTTGTGCTCCGTATCTGTTGTCCCATAATTTGTTTCTTTTTGGACTTTATTGCACCATTCTTTGAGTTGGATGTGATGAAATTCAGCTACATTTCTTTAGCAGTGGTGTCAGGGACAGCTTGCCCGCACCTGGTTCTTGCTGCCTCCCACCAATACAGATACTGGGTAACTCTATGCATCAAGTCTTCCATAGACTGAAAGAAATCACATACTAGTATTTTTTGACCTCCTGGTTATCATTCCACGACTAGTAGTCGCACCCTTGATAATACAATTCAGATAGGTTTTTTATTCACTTAGTAATAATTTTGTTAGCGTGATAGTTATCTAGGAATATAGGATTATAATCCATAATTTGTCATGCAATAAATATTTAATAAGCAATATGTACCGAGGGTTCTATGATTTCTGAATTTTATGTTGGTATCGTTTTCCGCTTATGCAGCCTACCAAACCATAAGTGTCTCTTTAACTCTCTGTGAACTAGGATAGAGTTTGGCCAATTTTGAAGATCTATGAATTAGGAAAACTTATCTCTTTTGAGACATATGGTAATATTGCATGAACGACACGGAGAAGATGAAATTTGGAAAAACATGATGTACTTTTGGGCAAAACATTTGGGATTGACACTAAACTCTAAAGATTGTATCATCAGTTTCTTGGCGATTTAAGTTTGGAGACAAATACAGATGATAGATCTTGAGTCTCTTGGAGGAAGTGGATTTGGCAGCAGGTGTAGGAGTTACCTGTATTTTGCACTTCGTTTTTTCCAACTGGTAAATTTTGGATAAGAGTTATTAGTTGAGGATTGAAACTTGAATTAACGGTGTGAAAAGAAGGCTCAATTGTTGTTCATTGATTGGTCGTTTGAATGGATAAGCTTATATTTTCAAGGTTTCATCTAGTTCTTTCTCTCTTTTAAAGAGCTCTTCCTCAGGCAATTTCCATTTTTTTTTGGTGAGCTTTTTGTGATCAGAGCCTTCACAATACTTAATTTTAACATCAGAACTGACACTGAGTATCTCTGAAAGGAAGCAGAAACTGCCTAGTTGAGGAAGGTTAATGTGCTGAGTTTTGCAGTTTGGCATTTCAATGTCGAAAATTGGAATATCAAAATAGCCGTGCTCTTTGTGTCGATTTGATCGTTCTGTAAACATCAGTAGAAACATGATCTGCAGTTACCCTGTTATATCTTGAATTGTTTGCAAGAGGTTTTCTTGAAATGCAGTGTGAACTTTGAACCTTGTTGAATACTTCCCTGAAACTGTTGAAAGGATATCAAATTATGTTACTGCTGGTTCTCCTGAGCGCTTTCATTTGAAAACAAAAATTGGCAAACAGGGAGAGCTTATCGTAAGATAAATAAATTCTTCTATGAATCCTATCTTTATATTAGTATCCATGTTAAGATAAATAAGGTCCACATTGGGAGGCCCTAACAATGAGAGCATGAAAGGTAACTGAAGGGAACTACTCATGGTGAATGAGATCAAATTGTCCTTTCTATATAAGCAAGTTGTATTTCTCAGTCCAAGAAAGCTGAACTAGATGTGAAAATGTCATAAAATGACTTTACCAAGGCATTCTTGTCACTAAAATGACTTTACCAAGGCGTTCTTGTCACTAAAATGACCATATTTTACATGGTTCTTCACAAAATAGGTTGTTATATGCATAGATGGATTCTAATAGTTTTTCGTCTTTGTTTATAGGACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCT-GGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGA</genome_strand>
        <mrna_strand>CCCCCCTCCGCCG-AATTCTCTCCCTT--TTTTCCTCTCTGTCATCGCCGGCCATTTAACGACGATCTCAATCATGGGAGAGATCGAAGAAGCATCCACCGGCGCCGACGAGATGTCTCCACTGTTACCGAACCCGAAAA-CGACCCGATTCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGTTTTCACGTCGTCCTTAGGTGGATGGGAACAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGCTTAAATCGGTCTATGCATTCAAACCGGAGACGGGCCGAGGTGTCCCTATCAGATTCAATCCCCGTAACGGCCGATCGATTCTAACCTATAGAGATGGATCCGAGATCCATATTGATGGAGAACCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCATATTGATAGTAATGGTGATGAAAGAATCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCAGCATGGGTCCTGGGCTGCTGTGGTTATCCTGTTCACACGCATAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335879" ref_strand="+" ref_description="SGN-E335879 [cTOE-6-H8]">
      <seq>gacgatctcaatcatggtagagatcgaagaagcatccaccggcgccgatgagatgtctccactgttatcgaacccgaaaaccgacccgatcccgtcaacccggactaagtctgttaagaccaaggtcccggagatcaaggtccatctgtataagcaagggaagggtccgatcgacgaattcacgtcgtccttaggtggatttgagcaagaccagctagaggttcgtgatattctagacaaatacgggttcaaatcggtctatgcattcaaaccggagactggccgaggtgttcctatcagattcaatccccgtaacggacgatcgattctaacctatagagatggatcggagatccatattgatggagaacctaaggactcgttgatccaacctattaccaggatattggttggtgttgcagtgatcaccctattgatagtaatggtgatgaaagagtctccagaatgggccaaaaagttgaacatcactggtggtaatatcccaccatgggtcctggctgctgcggttattctgttcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="49173" stop="46270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48873" g_stop="48498" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46734" g_stop="46570" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="541" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E335879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48873" e_stop="48498"/>
          <exon e_start="46734" e_stop="46570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAGGTACAATCATCTCACACAATTCCCAATTAAGTATATGGACTGTTATTATTTGTGCTCCGTATCTGTTGTCCCATAATTTGTTTCTTTTTGGACTTTATTGCACCATTCTTTGAGTTGGATGTGATGAAATTCAGCTACATTTCTTTAGCAGTGGTGTCAGGGACAGCTTGCCCGCACCTGGTTCTTGCTGCCTCCCACCAATACAGATACTGGGTAACTCTATGCATCAAGTCTTCCATAGACTGAAAGAAATCACATACTAGTATTTTTTGACCTCCTGGTTATCATTCCACGACTAGTAGTCGCACCCTTGATAATACAATTCAGATAGGTTTTTTATTCACTTAGTAATAATTTTGTTAGCGTGATAGTTATCTAGGAATATAGGATTATAATCCATAATTTGTCATGCAATAAATATTTAATAAGCAATATGTACCGAGGGTTCTATGATTTCTGAATTTTATGTTGGTATCGTTTTCCGCTTATGCAGCCTACCAAACCATAAGTGTCTCTTTAACTCTCTGTGAACTAGGATAGAGTTTGGCCAATTTTGAAGATCTATGAATTAGGAAAACTTATCTCTTTTGAGACATATGGTAATATTGCATGAACGACACGGAGAAGATGAAATTTGGAAAAACATGATGTACTTTTGGGCAAAACATTTGGGATTGACACTAAACTCTAAAGATTGTATCATCAGTTTCTTGGCGATTTAAGTTTGGAGACAAATACAGATGATAGATCTTGAGTCTCTTGGAGGAAGTGGATTTGGCAGCAGGTGTAGGAGTTACCTGTATTTTGCACTTCGTTTTTTCCAACTGGTAAATTTTGGATAAGAGTTATTAGTTGAGGATTGAAACTTGAATTAACGGTGTGAAAAGAAGGCTCAATTGTTGTTCATTGATTGGTCGTTTGAATGGATAAGCTTATATTTTCAAGGTTTCATCTAGTTCTTTCTCTCTTTTAAAGAGCTCTTCCTCAGGCAATTTCCATTTTTTTTTGGTGAGCTTTTTGTGATCAGAGCCTTCACAATACTTAATTTTAACATCAGAACTGACACTGAGTATCTCTGAAAGGAAGCAGAAACTGCCTAGTTGAGGAAGGTTAATGTGCTGAGTTTTGCAGTTTGGCATTTCAATGTCGAAAATTGGAATATCAAAATAGCCGTGCTCTTTGTGTCGATTTGATCGTTCTGTAAACATCAGTAGAAACATGATCTGCAGTTACCCTGTTATATCTTGAATTGTTTGCAAGAGGTTTTCTTGAAATGCAGTGTGAACTTTGAACCTTGTTGAATACTTCCCTGAAACTGTTGAAAGGATATCAAATTATGTTACTGCTGGTTCTCCTGAGCGCTTTCATTTGAAAACAAAAATTGGCAAACAGGGAGAGCTTATCGTAAGATAAATAAATTCTTCTATGAATCCTATCTTTATATTAGTATCCATGTTAAGATAAATAAGGTCCACATTGGGAGGCCCTAACAATGAGAGCATGAAAGGTAACTGAAGGGAACTACTCATGGTGAATGAGATCAAATTGTCCTTTCTATATAAGCAAGTTGTATTTCTCAGTCCAAGAAAGCTGAACTAGATGTGAAAATGTCATAAAATGACTTTACCAAGGCATTCTTGTCACTAAAATGACTTTACCAAGGCGTTCTTGTCACTAAAATGACCATATTTTACATGGTTCTTCACAAAATAGGTTGTTATATGCATAGATGGATTCTAATAGTTTTTCGTCTTTGTTTATAGGACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACG</genome_strand>
        <mrna_strand>GACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276612" ref_strand="+" ref_description="SGN-E276612 [cLEN-17-J24]">
      <seq>tccacccccatccacccatccccccgcggctcttctctcccttctttttcctctctgtcatcgccggccactcaacgacgatctcaatcatggtagagatcgaagaagcatccaccggcgccgatgagatgtctccactgttatcgaacccgaaaaccgacccgatcccgtcaacccggactaagtctgttaagaccaaggtcccggagatcaaggtccatctgtataagcaagggaagggtccgatcgacgaattcacgtcgtccttaggtggatttgagcaagaccagctagaggttcgtgatattctagacaaatacgggttcaaatcggtctatgcattcaaaccggagactggccgaggtgttcctatcagattcaatccccgtaacggacgatcgattctaacctatagagatggatcggagatccatattgatggagaacctaaggactcgttgatccaacctattaccaggatattggttggtgttgcagtgatcaccctattgatagtaatggtgatgaaagagtctccagaatgggccaaaaagttgaacatcactggtggtaatatcccaccatgggtcctggctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="49249" stop="46287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48949" g_stop="48498" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46734" g_stop="46587" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="600" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E276612" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48949" e_stop="48498"/>
          <exon e_start="46734" e_stop="46587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACCCCCACCCACCCATCCCCCCGCGGCTCTTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAGGTACAATCATCTCACACAATTCCCAATTAAGTATATGGACTGTTATTATTTGTGCTCCGTATCTGTTGTCCCATAATTTGTTTCTTTTTGGACTTTATTGCACCATTCTTTGAGTTGGATGTGATGAAATTCAGCTACATTTCTTTAGCAGTGGTGTCAGGGACAGCTTGCCCGCACCTGGTTCTTGCTGCCTCCCACCAATACAGATACTGGGTAACTCTATGCATCAAGTCTTCCATAGACTGAAAGAAATCACATACTAGTATTTTTTGACCTCCTGGTTATCATTCCACGACTAGTAGTCGCACCCTTGATAATACAATTCAGATAGGTTTTTTATTCACTTAGTAATAATTTTGTTAGCGTGATAGTTATCTAGGAATATAGGATTATAATCCATAATTTGTCATGCAATAAATATTTAATAAGCAATATGTACCGAGGGTTCTATGATTTCTGAATTTTATGTTGGTATCGTTTTCCGCTTATGCAGCCTACCAAACCATAAGTGTCTCTTTAACTCTCTGTGAACTAGGATAGAGTTTGGCCAATTTTGAAGATCTATGAATTAGGAAAACTTATCTCTTTTGAGACATATGGTAATATTGCATGAACGACACGGAGAAGATGAAATTTGGAAAAACATGATGTACTTTTGGGCAAAACATTTGGGATTGACACTAAACTCTAAAGATTGTATCATCAGTTTCTTGGCGATTTAAGTTTGGAGACAAATACAGATGATAGATCTTGAGTCTCTTGGAGGAAGTGGATTTGGCAGCAGGTGTAGGAGTTACCTGTATTTTGCACTTCGTTTTTTCCAACTGGTAAATTTTGGATAAGAGTTATTAGTTGAGGATTGAAACTTGAATTAACGGTGTGAAAAGAAGGCTCAATTGTTGTTCATTGATTGGTCGTTTGAATGGATAAGCTTATATTTTCAAGGTTTCATCTAGTTCTTTCTCTCTTTTAAAGAGCTCTTCCTCAGGCAATTTCCATTTTTTTTTGGTGAGCTTTTTGTGATCAGAGCCTTCACAATACTTAATTTTAACATCAGAACTGACACTGAGTATCTCTGAAAGGAAGCAGAAACTGCCTAGTTGAGGAAGGTTAATGTGCTGAGTTTTGCAGTTTGGCATTTCAATGTCGAAAATTGGAATATCAAAATAGCCGTGCTCTTTGTGTCGATTTGATCGTTCTGTAAACATCAGTAGAAACATGATCTGCAGTTACCCTGTTATATCTTGAATTGTTTGCAAGAGGTTTTCTTGAAATGCAGTGTGAACTTTGAACCTTGTTGAATACTTCCCTGAAACTGTTGAAAGGATATCAAATTATGTTACTGCTGGTTCTCCTGAGCGCTTTCATTTGAAAACAAAAATTGGCAAACAGGGAGAGCTTATCGTAAGATAAATAAATTCTTCTATGAATCCTATCTTTATATTAGTATCCATGTTAAGATAAATAAGGTCCACATTGGGAGGCCCTAACAATGAGAGCATGAAAGGTAACTGAAGGGAACTACTCATGGTGAATGAGATCAAATTGTCCTTTCTATATAAGCAAGTTGTATTTCTCAGTCCAAGAAAGCTGAACTAGATGTGAAAATGTCATAAAATGACTTTACCAAGGCATTCTTGTCACTAAAATGACTTTACCAAGGCGTTCTTGTCACTAAAATGACCATATTTTACATGGTTCTTCACAAAATAGGTTGTTATATGCATAGATGGATTCTAATAGTTTTTCGTCTTTGTTTATAGGACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTG</genome_strand>
        <mrna_strand>TCCACCCCCATCCACCCATCCCCCCGCGGCTCTTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254618" ref_strand="+" ref_description="SGN-E254618 [cLEG-29-G9]">
      <seq>tgacgcctccacccccacccacccatccccccgcggctcttctctcccttcgtgtttccggtctgtcatcgccggccactcaacgacgatctcaatcatggtagagatcgaagaagcatccaccggcgccgatgagatgtctccactgttatcgaacccgaaaaccgacccgatcccgtcaacccggactaagtctgttaagaccaaggtcccggagatcaaggtccatctgtataagcaagggaagggtccgatcgacgaattcacgtcgtccttaggtggatttgagcaagaccagctagaggttcgtgatattctagacaaatacgggttcaaatcggtctatgcattcaaaccggagactggccgaggtgttcctatcagattcaatccccgtaacggacgatcgattctaacctatagagatggatcggagatccatattgatggagaacctaaggactcgttgatccaacctattaccaggatattggttggtgttgcagtgatcaccctattgatagtaatggtgatgaaagagtctccagaatgggccaaaaagttgaacatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="49256" stop="46321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48956" g_stop="48498" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46734" g_stop="46621" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="574" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E254618" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48956" e_stop="48498"/>
          <exon e_start="46734" e_stop="46621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGCCTCCACCCCCACCCACCCATCCCCCCGCGGCTCTTCTCTCCCTTC-TTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAGGTACAATCATCTCACACAATTCCCAATTAAGTATATGGACTGTTATTATTTGTGCTCCGTATCTGTTGTCCCATAATTTGTTTCTTTTTGGACTTTATTGCACCATTCTTTGAGTTGGATGTGATGAAATTCAGCTACATTTCTTTAGCAGTGGTGTCAGGGACAGCTTGCCCGCACCTGGTTCTTGCTGCCTCCCACCAATACAGATACTGGGTAACTCTATGCATCAAGTCTTCCATAGACTGAAAGAAATCACATACTAGTATTTTTTGACCTCCTGGTTATCATTCCACGACTAGTAGTCGCACCCTTGATAATACAATTCAGATAGGTTTTTTATTCACTTAGTAATAATTTTGTTAGCGTGATAGTTATCTAGGAATATAGGATTATAATCCATAATTTGTCATGCAATAAATATTTAATAAGCAATATGTACCGAGGGTTCTATGATTTCTGAATTTTATGTTGGTATCGTTTTCCGCTTATGCAGCCTACCAAACCATAAGTGTCTCTTTAACTCTCTGTGAACTAGGATAGAGTTTGGCCAATTTTGAAGATCTATGAATTAGGAAAACTTATCTCTTTTGAGACATATGGTAATATTGCATGAACGACACGGAGAAGATGAAATTTGGAAAAACATGATGTACTTTTGGGCAAAACATTTGGGATTGACACTAAACTCTAAAGATTGTATCATCAGTTTCTTGGCGATTTAAGTTTGGAGACAAATACAGATGATAGATCTTGAGTCTCTTGGAGGAAGTGGATTTGGCAGCAGGTGTAGGAGTTACCTGTATTTTGCACTTCGTTTTTTCCAACTGGTAAATTTTGGATAAGAGTTATTAGTTGAGGATTGAAACTTGAATTAACGGTGTGAAAAGAAGGCTCAATTGTTGTTCATTGATTGGTCGTTTGAATGGATAAGCTTATATTTTCAAGGTTTCATCTAGTTCTTTCTCTCTTTTAAAGAGCTCTTCCTCAGGCAATTTCCATTTTTTTTTGGTGAGCTTTTTGTGATCAGAGCCTTCACAATACTTAATTTTAACATCAGAACTGACACTGAGTATCTCTGAAAGGAAGCAGAAACTGCCTAGTTGAGGAAGGTTAATGTGCTGAGTTTTGCAGTTTGGCATTTCAATGTCGAAAATTGGAATATCAAAATAGCCGTGCTCTTTGTGTCGATTTGATCGTTCTGTAAACATCAGTAGAAACATGATCTGCAGTTACCCTGTTATATCTTGAATTGTTTGCAAGAGGTTTTCTTGAAATGCAGTGTGAACTTTGAACCTTGTTGAATACTTCCCTGAAACTGTTGAAAGGATATCAAATTATGTTACTGCTGGTTCTCCTGAGCGCTTTCATTTGAAAACAAAAATTGGCAAACAGGGAGAGCTTATCGTAAGATAAATAAATTCTTCTATGAATCCTATCTTTATATTAGTATCCATGTTAAGATAAATAAGGTCCACATTGGGAGGCCCTAACAATGAGAGCATGAAAGGTAACTGAAGGGAACTACTCATGGTGAATGAGATCAAATTGTCCTTTCTATATAAGCAAGTTGTATTTCTCAGTCCAAGAAAGCTGAACTAGATGTGAAAATGTCATAAAATGACTTTACCAAGGCATTCTTGTCACTAAAATGACTTTACCAAGGCGTTCTTGTCACTAAAATGACCATATTTTACATGGTTCTTCACAAAATAGGTTGTTATATGCATAGATGGATTCTAATAGTTTTTCGTCTTTGTTTATAGGACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACT</genome_strand>
        <mrna_strand>TGACGCCTCCACCCCCACCCACCCATCCCCCCGCGGCTCTTCTCTCCCTTCGTGTTTCCGGTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594734" ref_strand="+" ref_description="SGN-E594734 [37992]">
      <seq>gtcatcgccggccatttaacgacgatctcaatcatgggagagatcgaagaagcatccaccggcgccgacgagatgtctccactgttaccgaacccgaaaaccgacccgattccgtcaacccggactaagtctgttaagaccaaggtcccggagatcaaggtccatctgtataagcaagggaagggtccgatcgacgttttcacgtcgtccttaggtggatgggaacaagaccagctagaggttcgtgatattctagacaaatacgggcttaaatcggtctatgcattcaaaccggagacgggccgaggtgtccctatcagattcaatccccgtaacggccgatcgattctaatcctatagagatggatccgagatccatattgatggagaacctaaggactcgttgatccaacctattaccaggatattggttggtgttgcagtgatcaccatattgatagtacatggtgatgaacgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="49193" stop="46351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48893" g_stop="48498" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46734" g_stop="46651" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="482" r_length="85" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E594734" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E594734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48893" e_stop="48498"/>
          <exon e_start="46734" e_stop="46651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAA-CCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAGGTACAATCATCTCACACAATTCCCAATTAAGTATATGGACTGTTATTATTTGTGCTCCGTATCTGTTGTCCCATAATTTGTTTCTTTTTGGACTTTATTGCACCATTCTTTGAGTTGGATGTGATGAAATTCAGCTACATTTCTTTAGCAGTGGTGTCAGGGACAGCTTGCCCGCACCTGGTTCTTGCTGCCTCCCACCAATACAGATACTGGGTAACTCTATGCATCAAGTCTTCCATAGACTGAAAGAAATCACATACTAGTATTTTTTGACCTCCTGGTTATCATTCCACGACTAGTAGTCGCACCCTTGATAATACAATTCAGATAGGTTTTTTATTCACTTAGTAATAATTTTGTTAGCGTGATAGTTATCTAGGAATATAGGATTATAATCCATAATTTGTCATGCAATAAATATTTAATAAGCAATATGTACCGAGGGTTCTATGATTTCTGAATTTTATGTTGGTATCGTTTTCCGCTTATGCAGCCTACCAAACCATAAGTGTCTCTTTAACTCTCTGTGAACTAGGATAGAGTTTGGCCAATTTTGAAGATCTATGAATTAGGAAAACTTATCTCTTTTGAGACATATGGTAATATTGCATGAACGACACGGAGAAGATGAAATTTGGAAAAACATGATGTACTTTTGGGCAAAACATTTGGGATTGACACTAAACTCTAAAGATTGTATCATCAGTTTCTTGGCGATTTAAGTTTGGAGACAAATACAGATGATAGATCTTGAGTCTCTTGGAGGAAGTGGATTTGGCAGCAGGTGTAGGAGTTACCTGTATTTTGCACTTCGTTTTTTCCAACTGGTAAATTTTGGATAAGAGTTATTAGTTGAGGATTGAAACTTGAATTAACGGTGTGAAAAGAAGGCTCAATTGTTGTTCATTGATTGGTCGTTTGAATGGATAAGCTTATATTTTCAAGGTTTCATCTAGTTCTTTCTCTCTTTTAAAGAGCTCTTCCTCAGGCAATTTCCATTTTTTTTTGGTGAGCTTTTTGTGATCAGAGCCTTCACAATACTTAATTTTAACATCAGAACTGACACTGAGTATCTCTGAAAGGAAGCAGAAACTGCCTAGTTGAGGAAGGTTAATGTGCTGAGTTTTGCAGTTTGGCATTTCAATGTCGAAAATTGGAATATCAAAATAGCCGTGCTCTTTGTGTCGATTTGATCGTTCTGTAAACATCAGTAGAAACATGATCTGCAGTTACCCTGTTATATCTTGAATTGTTTGCAAGAGGTTTTCTTGAAATGCAGTGTGAACTTTGAACCTTGTTGAATACTTCCCTGAAACTGTTGAAAGGATATCAAATTATGTTACTGCTGGTTCTCCTGAGCGCTTTCATTTGAAAACAAAAATTGGCAAACAGGGAGAGCTTATCGTAAGATAAATAAATTCTTCTATGAATCCTATCTTTATATTAGTATCCATGTTAAGATAAATAAGGTCCACATTGGGAGGCCCTAACAATGAGAGCATGAAAGGTAACTGAAGGGAACTACTCATGGTGAATGAGATCAAATTGTCCTTTCTATATAAGCAAGTTGTATTTCTCAGTCCAAGAAAGCTGAACTAGATGTGAAAATGTCATAAAATGACTTTACCAAGGCATTCTTGTCACTAAAATGACTTTACCAAGGCGTTCTTGTCACTAAAATGACCATATTTTACATGGTTCTTCACAAAATAGGTTGTTATATGCATAGATGGATTCTAATAGTTTTTCGTCTTTGTTTATAGGACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTA-ATGGTGATGAAAGAGTCT</genome_strand>
        <mrna_strand>GTCATCGCCGGCCATTTAACGACGATCTCAATCATGGGAGAGATCGAAGAAGCATCCACCGGCGCCGACGAGATGTCTCCACTGTTACCGAACCCGAAAACCGACCCGATTCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGTTTTCACGTCGTCCTTAGGTGGATGGGAACAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGCTTAAATCGGTCTATGCATTCAAACCGGAGACGGGCCGAGGTGTCCCTATCAGATTCAATCCCCGTAACGGCCGATCGATTCTAATCCTATAGAGATGGATCCGAGATCCATATTGATGGAGAACCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCATATTGATAGTACATGGTGATGAACGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360365" ref_strand="+" ref_description="SGN-E360365 [cLPP-8-F15]">
      <seq>ctctctcccttctttgtgctctctgtcatcgccggccactcaacgacgatctcaatcatggtagagatcgaagaagcatccaccggcgccgacgagatgtctccactgttatcgaacccgaaaaccgacccgattccgtcaacccggactaagtctgttaagaccaaggtcccggagatcaaggtccatctgtataagcaagggaagggtccgatcgacgaattcacgtcgcccttatgtggatttgagcaagaccagctagaggttcgtgatattctagacaaatacgggttcaaatcggtctatgcattcaaaccggagactggccgaggtgttcctatcagattcaatccccgtaacggccgatcgattctaacctatatagatggatcggagatccatattgatggagaacctaaggactcgttgatccaacctattaccaggatattggttggtgttgcagtgatcaccatattgataggcatggtgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="49216" stop="46358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48917" g_stop="48498" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46734" g_stop="46658" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="497" r_length="77" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E360365" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48917" e_stop="48498"/>
          <exon e_start="46734" e_stop="46658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAGGTACAATCATCTCACACAATTCCCAATTAAGTATATGGACTGTTATTATTTGTGCTCCGTATCTGTTGTCCCATAATTTGTTTCTTTTTGGACTTTATTGCACCATTCTTTGAGTTGGATGTGATGAAATTCAGCTACATTTCTTTAGCAGTGGTGTCAGGGACAGCTTGCCCGCACCTGGTTCTTGCTGCCTCCCACCAATACAGATACTGGGTAACTCTATGCATCAAGTCTTCCATAGACTGAAAGAAATCACATACTAGTATTTTTTGACCTCCTGGTTATCATTCCACGACTAGTAGTCGCACCCTTGATAATACAATTCAGATAGGTTTTTTATTCACTTAGTAATAATTTTGTTAGCGTGATAGTTATCTAGGAATATAGGATTATAATCCATAATTTGTCATGCAATAAATATTTAATAAGCAATATGTACCGAGGGTTCTATGATTTCTGAATTTTATGTTGGTATCGTTTTCCGCTTATGCAGCCTACCAAACCATAAGTGTCTCTTTAACTCTCTGTGAACTAGGATAGAGTTTGGCCAATTTTGAAGATCTATGAATTAGGAAAACTTATCTCTTTTGAGACATATGGTAATATTGCATGAACGACACGGAGAAGATGAAATTTGGAAAAACATGATGTACTTTTGGGCAAAACATTTGGGATTGACACTAAACTCTAAAGATTGTATCATCAGTTTCTTGGCGATTTAAGTTTGGAGACAAATACAGATGATAGATCTTGAGTCTCTTGGAGGAAGTGGATTTGGCAGCAGGTGTAGGAGTTACCTGTATTTTGCACTTCGTTTTTTCCAACTGGTAAATTTTGGATAAGAGTTATTAGTTGAGGATTGAAACTTGAATTAACGGTGTGAAAAGAAGGCTCAATTGTTGTTCATTGATTGGTCGTTTGAATGGATAAGCTTATATTTTCAAGGTTTCATCTAGTTCTTTCTCTCTTTTAAAGAGCTCTTCCTCAGGCAATTTCCATTTTTTTTTGGTGAGCTTTTTGTGATCAGAGCCTTCACAATACTTAATTTTAACATCAGAACTGACACTGAGTATCTCTGAAAGGAAGCAGAAACTGCCTAGTTGAGGAAGGTTAATGTGCTGAGTTTTGCAGTTTGGCATTTCAATGTCGAAAATTGGAATATCAAAATAGCCGTGCTCTTTGTGTCGATTTGATCGTTCTGTAAACATCAGTAGAAACATGATCTGCAGTTACCCTGTTATATCTTGAATTGTTTGCAAGAGGTTTTCTTGAAATGCAGTGTGAACTTTGAACCTTGTTGAATACTTCCCTGAAACTGTTGAAAGGATATCAAATTATGTTACTGCTGGTTCTCCTGAGCGCTTTCATTTGAAAACAAAAATTGGCAAACAGGGAGAGCTTATCGTAAGATAAATAAATTCTTCTATGAATCCTATCTTTATATTAGTATCCATGTTAAGATAAATAAGGTCCACATTGGGAGGCCCTAACAATGAGAGCATGAAAGGTAACTGAAGGGAACTACTCATGGTGAATGAGATCAAATTGTCCTTTCTATATAAGCAAGTTGTATTTCTCAGTCCAAGAAAGCTGAACTAGATGTGAAAATGTCATAAAATGACTTTACCAAGGCATTCTTGTCACTAAAATGACTTTACCAAGGCGTTCTTGTCACTAAAATGACCATATTTTACATGGTTCTTCACAAAATAGGTTGTTATATGCATAGATGGATTCTAATAGTTTTTCGTCTTTGTTTATAGGACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAA</genome_strand>
        <mrna_strand>CTCTCTCCCTTCTTTGTGCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGACGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATTCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGCCCTTATGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGCCGATCGATTCTAACCTATATAGATGGATCGGAGATCCATATTGATGGAGAACCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCATATTGATAGGCATGGTGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298029" ref_strand="+" ref_description="SGN-E298029 [cLEW-12-K15]">
      <seq>ttgacgcctccacccccacccacccatccccccgcggctcttctctcccttctttttcctctctgtcatcgccggccactcaacgacgatctcaatcatggtagagatcgaagaagcatccaccggcgccgatgagatgtctccactgttatcgaacccgaaaaccgacccgatcccgtcaacccggactaagtctgttaagaccaaggtcccggagatcaaggtccatctgtataagcaagggaagggtccgatcgacgaattcacgtcgtccttaggtggatttgagcaagaccagctagaggttcgtgatattctagacaaatacgggttcaaatcggtctatgcattcaaaccggagactggccgaggtgttcctatcagattcaatccccgtaacggacgatcgattctaacctatagagatggatcggagatccatattgatggagaacctaaggactcgttgatccaacctattaccaggatattggttggtgttgcagtgatcaccctattgatagtaatggtgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="49257" stop="46359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48957" g_stop="48498" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46734" g_stop="46659" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="536" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E298029" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48957" e_stop="48498"/>
          <exon e_start="46734" e_stop="46659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACGCCTCCACCCCCACCCACCCATCCCCCCGCGGCTCTTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAGGTACAATCATCTCACACAATTCCCAATTAAGTATATGGACTGTTATTATTTGTGCTCCGTATCTGTTGTCCCATAATTTGTTTCTTTTTGGACTTTATTGCACCATTCTTTGAGTTGGATGTGATGAAATTCAGCTACATTTCTTTAGCAGTGGTGTCAGGGACAGCTTGCCCGCACCTGGTTCTTGCTGCCTCCCACCAATACAGATACTGGGTAACTCTATGCATCAAGTCTTCCATAGACTGAAAGAAATCACATACTAGTATTTTTTGACCTCCTGGTTATCATTCCACGACTAGTAGTCGCACCCTTGATAATACAATTCAGATAGGTTTTTTATTCACTTAGTAATAATTTTGTTAGCGTGATAGTTATCTAGGAATATAGGATTATAATCCATAATTTGTCATGCAATAAATATTTAATAAGCAATATGTACCGAGGGTTCTATGATTTCTGAATTTTATGTTGGTATCGTTTTCCGCTTATGCAGCCTACCAAACCATAAGTGTCTCTTTAACTCTCTGTGAACTAGGATAGAGTTTGGCCAATTTTGAAGATCTATGAATTAGGAAAACTTATCTCTTTTGAGACATATGGTAATATTGCATGAACGACACGGAGAAGATGAAATTTGGAAAAACATGATGTACTTTTGGGCAAAACATTTGGGATTGACACTAAACTCTAAAGATTGTATCATCAGTTTCTTGGCGATTTAAGTTTGGAGACAAATACAGATGATAGATCTTGAGTCTCTTGGAGGAAGTGGATTTGGCAGCAGGTGTAGGAGTTACCTGTATTTTGCACTTCGTTTTTTCCAACTGGTAAATTTTGGATAAGAGTTATTAGTTGAGGATTGAAACTTGAATTAACGGTGTGAAAAGAAGGCTCAATTGTTGTTCATTGATTGGTCGTTTGAATGGATAAGCTTATATTTTCAAGGTTTCATCTAGTTCTTTCTCTCTTTTAAAGAGCTCTTCCTCAGGCAATTTCCATTTTTTTTTGGTGAGCTTTTTGTGATCAGAGCCTTCACAATACTTAATTTTAACATCAGAACTGACACTGAGTATCTCTGAAAGGAAGCAGAAACTGCCTAGTTGAGGAAGGTTAATGTGCTGAGTTTTGCAGTTTGGCATTTCAATGTCGAAAATTGGAATATCAAAATAGCCGTGCTCTTTGTGTCGATTTGATCGTTCTGTAAACATCAGTAGAAACATGATCTGCAGTTACCCTGTTATATCTTGAATTGTTTGCAAGAGGTTTTCTTGAAATGCAGTGTGAACTTTGAACCTTGTTGAATACTTCCCTGAAACTGTTGAAAGGATATCAAATTATGTTACTGCTGGTTCTCCTGAGCGCTTTCATTTGAAAACAAAAATTGGCAAACAGGGAGAGCTTATCGTAAGATAAATAAATTCTTCTATGAATCCTATCTTTATATTAGTATCCATGTTAAGATAAATAAGGTCCACATTGGGAGGCCCTAACAATGAGAGCATGAAAGGTAACTGAAGGGAACTACTCATGGTGAATGAGATCAAATTGTCCTTTCTATATAAGCAAGTTGTATTTCTCAGTCCAAGAAAGCTGAACTAGATGTGAAAATGTCATAAAATGACTTTACCAAGGCATTCTTGTCACTAAAATGACTTTACCAAGGCGTTCTTGTCACTAAAATGACCATATTTTACATGGTTCTTCACAAAATAGGTTGTTATATGCATAGATGGATTCTAATAGTTTTTCGTCTTTGTTTATAGGACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGA</genome_strand>
        <mrna_strand>TTGACGCCTCCACCCCCACCCACCCATCCCCCCGCGGCTCTTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298109" ref_strand="+" ref_description="SGN-E298109 [cLEW-12-K14]">
      <seq>ttgacgcctccacccccacccacccattcgcccgcggctcttgtctccctgctttttcctctctgtcatcgccggccactcaacgacgatctcaatcatggtagagatcgaataatcacacaccagcgccgatgagatgtcttcactgttatcgaacccgaaaaccgacccgatcccgtcaacccggactaagtctgttaagaccaaggtcccggagatcaaggtccatctgtataagcaagggaagggtccgatcgacgaattcacgtcgtccttaggtggatttgagcaagaccagctagaggttcgtgatattctagacaaatacgggttcaaatcggtctatgcattcaaaccggagactggccgaggtgttcctatcagattcaatccccgtgacggacgatcgattctaacctatagagatggatcggagatccatattgatggagaacctaaggactcgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="49257" stop="48194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48957" g_stop="48498" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E298109" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48957" e_stop="48498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACGCCTCCACCCCCACCCACCCATCCCCCCGCGGCTCTTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAG</genome_strand>
        <mrna_strand>TTGACGCCTCCACCCCCACCCACCCATTCGCCCGCGGCTCTTGTCTCCCTGCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAATAATCACACACCAGCGCCGATGAGATGTCTTCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTGACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282291" ref_strand="+" ref_description="SGN-E282291 [cLES-4-J14]">
      <seq>tgacgcctccacccccacccacccatccccccgcggctcttctctcccttctttttcctctctgtcatcgccggccactcaacgacgatctcaatcatggtagagatcgaagaagcatccaccggcgccgatgagatgtctccactgttatcgaacccgaaaaccgacccgatcccgtcaacccggactaagtctgttaagaccaaggtcccggagatcaaggtccatctgtataagcaagggaagggtccgatcgacgaattcacgtcgtccttaggtggatttgagctagaccagctagaggttcgtgatattctagacaaatacgggttcaaatcggtctatgcattcaaaccggagactggccgaggtgttcctatcagattcaatccccgtaacggacgatcgattctaacctatagagatggatcggagatccatattgatggagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="49256" stop="48203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48956" g_stop="48503" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E282291" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48956" e_stop="48503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGCCTCCACCCCCACCCACCCATCCCCCCGCGGCTCTTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAAC</genome_strand>
        <mrna_strand>TGACGCCTCCACCCCCACCCACCCATCCCCCCGCGGCTCTTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCTAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307896" ref_strand="+" ref_description="SGN-E307896 [cLEY-20-M24]">
      <seq>tcttctctcccttctttttcctctctgcatcgccggccactcaacgacgatctcntcatggtagagatcgaagaagcatccaccggcgccgatgagatgtctccactgttatcgaacccgaaaaccgacccgatcccgtcaacccggactaagtctgttaagaccaaggtcccggagatcaaggtccatctgtataagcaagggaagggtccgatcgacgaattcacgtcgtccttaggtggatttgagcaagaccagctagaggttcgtgatattctagacaaatacgggttcaaatcggtctatggcattcaaaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="49219" stop="48300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48919" g_stop="48600" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E307896" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48919" e_stop="48600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTAT-GCATTCAAACCG</genome_strand>
        <mrna_strand>TCTTCTCTCCCTTCTTTTTCCTCTCTG-CATCGCCGGCCACTCAACGACGATCTC-NTCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGGCATTCAAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307900" ref_strand="+" ref_description="SGN-E307900 [cLEY-20-O24]">
      <seq>tcttctctcccttctttttcctctctgtcatcgccggccactcaacgacgatctcaatcatggtagagatcgaagaagcatccaccggcgccgatgagatgtctccactgttatcgaacccgaaaaccgacccgatcccgtcaacccggactaagtctgttaagaccaaggtcccggagatcaaggtccatctgtataagcaagggaagggtccgatcgacgaattcacgtcgtccttaaggggatttgagcaagaccagctcgaggttcgcgatatttctagacaaaatcgggttcaaatcggtctatgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0066O12-pky8R/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0066O12.1" temp_strand="-" temp_description="C04HBa0066O12.1  CU468256.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0066O12 upload_account_name:france">
        <position start="49219" stop="48307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48919" g_stop="48607" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0066O12.1" gen_strand="-" ref_id="SGN-E307900" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0066O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48919" e_stop="48607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATA-TTCTAGACAAATACGGGTTCAAATCGGTCTATGCATT</genome_strand>
        <mrna_strand>TCTTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAAGGGGATTTGAGCAAGACCAGCTCGAGGTTCGCGATATTTCTAGACAAAATCGGGTTCAAATCGGTCTATGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>57</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4800" PGL_stop="7067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6018" e_stop="7067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="6018" e_stop="7067" e_length="1050"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6018" stop="6669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6409" stop="6788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6670" stop="7067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604011" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATTGTTGAAATGCTTAACCAATACTCTAATGAGCTGCATACCAAGAATTTTGAGAAAGTGGATGAATTCTTGATGGAAGAGATCATGGTTTTACAGGAATCAAAAGGGATTGGATTGCCAAACTTCCTTCCTCGAGGTGTTTTCCTCAATGTTTTGCAGAGAAAAGTGAAGGAAATTGCTGCCTCTCCAGAGGATTTTGTGGGGAAACTGTGGAATTACTTAGAGCGAGTTGTAATCATAGTTTTAATGCATCATTGTGAGAACTATCCGCAGCTTCAGTCTTCTACTAGAAGAGCAGCCCAAAACTTGATTGCCAAGAAAAAGAATGAATCAGTTGATTGGGTAAGGGAAATCATCGGGATGGAAAAGCTGACTGATTACACTTGTAATCCTGACTATTTAACTACTTATAGTAAGTTCATGGCTCAACAAAACACGTTCATGGAGATTATGAATGATCATGGGAAGTACTCCATGATAAACCTTGAAGGGGTAGGAGTAATCGACGTTGGTCATTTGAGGAAGCATCTAGATGTGGTGCAACAGGCTTTCGATTTGAAGATGAGAATGATGGCCTACTGGAAAATTGTGCTAATGAGGCTGGTGGATTCTATGGCCTTACACATAATGTTCAGCATACGAAACATGATTAACAAGGAGATGGAAAACGAGATCATACAGGATCTGATGGCACCACATGGTGGTGGAATTGAAAGAATGCTTGACGAGTCACCTTTGGTTGCTGAGAAACGCAATAGGCTCAAAAAGAGTGTCAAGCTTCTCAAGGAGTCCAAAGAGGTGGTGGCCAATATCATGGACAGGATTTCACTTCACGATGATAATGAAAGGGACTAAGGTTAATATGTGATACTAATGAGCAGGGCACTCTATTTCCATTCAGCCAATGTTCCTAATATCCTGTTTATCTCCTAATATCAAACTACCAAGTACTATGTTTTGGTTTTACAATATATCTTTGCCCCTGCTTGTATGTAATTTTCGTATTTCTTGCTATTAGCTAAATGCAAATCAAGTTTATTTGTACGAA</gDNA_template>
            <first_frame> E  L  L  K  C  L  T  N  T  L  M  S  C  I  P  R  I  L  R  K  W  M  N  S  *  W  K  R  S  W  F  Y  R  N  Q  K  G  L  D  C  Q  T  S  F  L  E  V  F  S  S  M  F  C  R  E  K  *  R  K  L  L  P  L  Q  R  I  L  W  G  N  C  G  I  T  *  S  E  L  *  S  *  F  *  C  I  I  V  R  T  I  R  S  F  S  L  L  L  E  E  Q  P  K  T  *  L  P  R  K  R  M  N  Q  L  I  G  *  G  K  S  S  G  W  K  S  *  L  I  T  L  V  I  L  T  I  *  L  L  I  V  S  S  W  L  N  K  T  R  S  W  R  L  *  M  I  M  G  S  T  P  *  *  T  L  K  G  *  E  *  S  T  L  V  I  *  G  S  I  *  M  W  C  N  R  L  S  I  *  R  *  E  *  W  P  T  G  K  L  C  *  *  G  W  W  I  L  W  P  Y  T  *  C  S  A  Y  E  T  *  L  T  R  R  W  K  T  R  S  Y  R  I  *  W  H  H  M  V  V  E  L  K  E  C  L  T  S  H  L  W  L  L  R  N  A  I  G  S  K  R  V  S  S  F  S  R  S  P  K  R  W  W  P  I  S  W  T  G  F  H  F  T  M  I  M  K  G  T  K  V  N  M  *  Y  *  *  A  G  H  S  I  S  I  Q  P  M  F  L  I  S  C  L  S  P  N  I  K  L  P  S  T  M  F  W  F  Y  N  I  S  L  P  L  L  V  C  N  F  R  I  S  C  Y  *  L  N  A  N  Q  V  Y  L  Y  E </first_frame>
            <second_frame>  N  C  *  N  A  *  P  I  L  *  *  A  A  Y  Q  E  F  *  E  S  G  *  I  L  D  G  R  D  H  G  F  T  G  I  K  R  D  W  I  A  K  L  P  S  S  R  C  F  P  Q  C  F  A  E  K  S  E  G  N  C  C  L  S  R  G  F  C  G  E  T  V  E  L  L  R  A  S  C  N  H  S  F  N  A  S  L  *  E  L  S  A  A  S  V  F  Y  *  K  S  S  P  K  L  D  C  Q  E  K  E  *  I  S  *  L  G  K  G  N  H  R  D  G  K  A  D  *  L  H  L  *  S  *  L  F  N  Y  L  *  *  V  H  G  S  T  K  H  V  H  G  D  Y  E  *  S  W  E  V  L  H  D  K  P  *  R  G  R  S  N  R  R  W  S  F  E  E  A  S  R  C  G  A  T  G  F  R  F  E  D  E  N  D  G  L  L  E  N  C  A  N  E  A  G  G  F  Y  G  L  T  H  N  V  Q  H  T  K  H  D  *  Q  G  D  G  K  R  D  H  T  G  S  D  G  T  T  W  W  W  N  *  K  N  A  *  R  V  T  F  G  C  *  E  T  Q  *  A  Q  K  E  C  Q  A  S  Q  G  V  Q  R  G  G  G  Q  Y  H  G  Q  D  F  T  S  R  *  *  *  K  G  L  R  L  I  C  D  T  N  E  Q  G  T  L  F  P  F  S  Q  C  S  *  Y  P  V  Y  L  L  I  S  N  Y  Q  V  L  C  F  G  F  T  I  Y  L  C  P  C  L  Y  V  I  F  V  F  L  A  I  S  *  M  Q  I  K  F  I  C  T   </second_frame>
            <third_frame>   I  V  E  M  L  N  Q  Y  S  N  E  L  H  T  K  N  F  E  K  V  D  E  F  L  M  E  E  I  M  V  L  Q  E  S  K  G  I  G  L  P  N  F  L  P  R  G  V  F  L  N  V  L  Q  R  K  V  K  E  I  A  A  S  P  E  D  F  V  G  K  L  W  N  Y  L  E  R  V  V  I  I  V  L  M  H  H  C  E  N  Y  P  Q  L  Q  S  S  T  R  R  A  A  Q  N  L  I  A  K  K  K  N  E  S  V  D  W  V  R  E  I  I  G  M  E  K  L  T  D  Y  T  C  N  P  D  Y  L  T  T  Y  S  K  F  M  A  Q  Q  N  T  F  M  E  I  M  N  D  H  G  K  Y  S  M  I  N  L  E  G  V  G  V  I  D  V  G  H  L  R  K  H  L  D  V  V  Q  Q  A  F  D  L  K  M  R  M  M  A  Y  W  K  I  V  L  M  R  L  V  D  S  M  A  L  H  I  M  F  S  I  R  N  M  I  N  K  E  M  E  N  E  I  I  Q  D  L  M  A  P  H  G  G  G  I  E  R  M  L  D  E  S  P  L  V  A  E  K  R  N  R  L  K  K  S  V  K  L  L  K  E  S  K  E  V  V  A  N  I  M  D  R  I  S  L  H  D  D  N  E  R  D  *  G  *  Y  V  I  L  M  S  R  A  L  Y  F  H  S  A  N  V  P  N  I  L  F  I  S  *  Y  Q  T  T  K  Y  Y  V  L  V  L  Q  Y  I  F  A  P  A  C  M  *  F  S  Y  F  L  L  L  A  K  C  K  S  S  L  F  V  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6020" stop="6874"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVEMLNQYSNELHTKNFEKVDEFLMEEIMVLQESKGIGLPNFLPRGVFLNVLQRKVKEIAASPEDFVGKLWNYLERVVIIVLMHHCENYPQLQSSTRRAAQNLIAKKKNESVDWVREIIGMEKLTDYTCNPDYLTTYSKFMAQQNTFMEIMNDHGKYSMINLEGVGVIDVGHLRKHLDVVQQAFDLKMRMMAYWKIVLMRLVDSMALHIMFSIRNMINKEMENEIIQDLMAPHGGGIERMLDESPLVAEKRNRLKKSVKLLKESKEVVANIMDRISLHDDNERD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4800" e_stop="5633"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="4800" e_stop="5633" e_length="834"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4800" stop="5381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4806" stop="5633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACCTTAAGAACCATTTTTTCCTACTTACTAGAGTATCAAGAAAGTATGGCTTACCAAAACATCAATGGTTGCATTTCTGATTCAATTGAAATTCTTGATCCAAAACCTCTTGCAGTAGTAGCTTCTGGTGTTGTTCATCCTCCTATTGTTGCATCTTTCAATGATAGAATTCGTCCACTTCTCGACTGTATAGACAAGCTCCGCCATCTCAACATCATGCAAGAAGGTATCCAGCTCCCAACGATCGTAGTAGTCGGAGATCAATCTTCTGGAAAGTCCAGTGTTCTTGAATCCCTTGCTGGGATCAGTCTTCCTAGAGGACAAGGCATTTGCACCAGGGTCCCTCTTGTTATGAGGCTGCAGAATGATCCAAACATCACAGCACCAAGTCTTCAGTTGGAGTACAATAACAAGTCACTCCCTGTTGATGAAATTGGCATTGCAGATGCTATCATTCTTGCTACTGATGAGATTGCTGGACATGGTAAAGGTATATCTAACTACCCTTTAACACTAGTAGTTAAGAAAAATGGTGTCCCTGATTTGACCATGGTGGATTTACCTGGTATTACTAGAGTTGCTGTACAAGGTCAACCTGAAGACATTTATGAGCAAATTTACGATATTATTATGAAATATATTGTCCCTGAGGAAAGCATAATCTTGAATGTTTTGTCAGCTACTGTTGATTTCCCTACTTGCGAGTCTATTAGAATGTCTCAGAAAGTGGACAAGACAGGGGAAAGGACTCTGGCTGTTGTGACAAAAGCTGATAAAGCCCCTGAAGGGCTGCTTGAAAAGGTTACCGCGGATGAAGTGAATATAGGGCTTG</gDNA_template>
            <first_frame> K  P  *  E  P  F  F  P  T  Y  *  S  I  K  K  V  W  L  T  K  T  S  M  V  A  F  L  I  Q  L  K  F  L  I  Q  N  L  L  Q  *  *  L  L  V  L  F  I  L  L  L  L  H  L  S  M  I  E  F  V  H  F  S  T  V  *  T  S  S  A  I  S  T  S  C  K  K  V  S  S  S  Q  R  S  *  *  S  E  I  N  L  L  E  S  P  V  F  L  N  P  L  L  G  S  V  F  L  E  D  K  A  F  A  P  G  S  L  L  L  *  G  C  R  M  I  Q  T  S  Q  H  Q  V  F  S  W  S  T  I  T  S  H  S  L  L  M  K  L  A  L  Q  M  L  S  F  L  L  L  M  R  L  L  D  M  V  K  V  Y  L  T  T  L  *  H  *  *  L  R  K  M  V  S  L  I  *  P  W  W  I  Y  L  V  L  L  E  L  L  Y  K  V  N  L  K  T  F  M  S  K  F  T  I  L  L  *  N  I  L  S  L  R  K  A  *  S  *  M  F  C  Q  L  L  L  I  S  L  L  A  S  L  L  E  C  L  R  K  W  T  R  Q  G  K  G  L  W  L  L  *  Q  K  L  I  K  P  L  K  G  C  L  K  R  L  P  R  M  K  *  I  *  G  L </first_frame>
            <second_frame>  N  L  K  N  H  F  F  L  L  T  R  V  S  R  K  Y  G  L  P  K  H  Q  W  L  H  F  *  F  N  *  N  S  *  S  K  T  S  C  S  S  S  F  W  C  C  S  S  S  Y  C  C  I  F  Q  *  *  N  S  S  T  S  R  L  Y  R  Q  A  P  P  S  Q  H  H  A  R  R  Y  P  A  P  N  D  R  S  S  R  R  S  I  F  W  K  V  Q  C  S  *  I  P  C  W  D  Q  S  S  *  R  T  R  H  L  H  Q  G  P  S  C  Y  E  A  A  E  *  S  K  H  H  S  T  K  S  S  V  G  V  Q  *  Q  V  T  P  C  *  *  N  W  H  C  R  C  Y  H  S  C  Y  *  *  D  C  W  T  W  *  R  Y  I  *  L  P  F  N  T  S  S  *  E  K  W  C  P  *  F  D  H  G  G  F  T  W  Y  Y  *  S  C  C  T  R  S  T  *  R  H  L  *  A  N  L  R  Y  Y  Y  E  I  Y  C  P  *  G  K  H  N  L  E  C  F  V  S  Y  C  *  F  P  Y  L  R  V  Y  *  N  V  S  E  S  G  Q  D  R  G  K  D  S  G  C  C  D  K  S  *  *  S  P  *  R  A  A  *  K  G  Y  R  G  *  S  E  Y  R  A   </second_frame>
            <third_frame>   T  L  R  T  I  F  S  Y  L  L  E  Y  Q  E  S  M  A  Y  Q  N  I  N  G  C  I  S  D  S  I  E  I  L  D  P  K  P  L  A  V  V  A  S  G  V  V  H  P  P  I  V  A  S  F  N  D  R  I  R  P  L  L  D  C  I  D  K  L  R  H  L  N  I  M  Q  E  G  I  Q  L  P  T  I  V  V  V  G  D  Q  S  S  G  K  S  S  V  L  E  S  L  A  G  I  S  L  P  R  G  Q  G  I  C  T  R  V  P  L  V  M  R  L  Q  N  D  P  N  I  T  A  P  S  L  Q  L  E  Y  N  N  K  S  L  P  V  D  E  I  G  I  A  D  A  I  I  L  A  T  D  E  I  A  G  H  G  K  G  I  S  N  Y  P  L  T  L  V  V  K  K  N  G  V  P  D  L  T  M  V  D  L  P  G  I  T  R  V  A  V  Q  G  Q  P  E  D  I  Y  E  Q  I  Y  D  I  I  M  K  Y  I  V  P  E  E  S  I  I  L  N  V  L  S  A  T  V  D  F  P  T  C  E  S  I  R  M  S  Q  K  V  D  K  T  G  E  R  T  L  A  V  V  T  K  A  D  K  A  P  E  G  L  L  E  K  V  T  A  D  E  V  N  I  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4802" stop="5632"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLRTIFSYLLEYQESMAYQNINGCISDSIEILDPKPLAVVASGVVHPPIVASFNDRIRPLLDCIDKLRHLNIMQEGIQLPTIVVVGDQSSGKSSVLESLAGISLPRGQGICTRVPLVMRLQNDPNITAPSLQLEYNNKSLPVDEIGIADAIILATDEIAGHGKGISNYPLTLVVKKNGVPDLTMVDLPGITRVAVQGQPEDIYEQIYDIIMKYIVPEESIILNVLSATVDFPTCESIRMSQKVDKTGERTLAVVTKADKAPEGLLEKVTADEVNIGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="4809" e_stop="4961"/>
            <exon e_start="6081" e_stop="6390"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.941"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="4809" e_stop="4961" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4962" i_stop="6080" i_length="1119"/>
          </intron>
          <exon e_serial="2" e_score="0.961">
            <gDNA_exon_boundary e_start="6081" e_stop="6390" e_length="310"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4809" stop="4961"/>
              <exon start="6081" stop="6390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450347" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACCATTTTTTCCTACTTACTAGAGTATCAAGAAAGTATGGCTTACCAAAACATCAATGGTTGCATTTCTGATTCAATTGAAATTCTTGATCCAAAACCTCTTGCAGTAGTAGCTTCTGGTGTTGTTCATCCTCCTATTGTTGCATCTTTCA : ATGAATTCTTGATGGAAGAGATCATGGTTTTACAGGAATCAAAAGGGATTGGATTGCCAAACTTCCTTCCTCGAGGTGTTTTCCTCAATGTTTTGCAGAGAAAAGTGAAGGAAATTGCTGCCTCTCCAGAGGATTTTGTGGGGAAACTGTGGAATTACTTAGAGCGAGTTGTAATCATAGTTTTAATGCATCATTGTGAGAACTATCCGCAGCTTCAGTCTTCTACTAGAAGAGCAGCCCAAAACTTGATTGCCAAGAAAAAGAATGAATCAGTTGATTGGGTAAGGGAAATCATCGGGATGGAAAAGCT</gDNA_template>
            <first_frame> E  P  F  F  P  T  Y  *  S  I  K  K  V  W  L  T  K  T  S  M  V  A  F  L  I  Q  L  K  F  L  I  Q  N  L  L  Q  *  *  L  L  V  L  F  I  L  L  L  L  H  L  S  :  M  N  S  *  W  K  R  S  W  F  Y  R  N  Q  K  G  L  D  C  Q  T  S  F  L  E  V  F  S  S  M  F  C  R  E  K  *  R  K  L  L  P  L  Q  R  I  L  W  G  N  C  G  I  T  *  S  E  L  *  S  *  F  *  C  I  I  V  R  T  I  R  S  F  S  L  L  L  E  E  Q  P  K  T  *  L  P  R  K  R  M  N  Q  L  I  G  *  G  K  S  S  G  W  K  S  </first_frame>
            <second_frame>  N  H  F  F  L  L  T  R  V  S  R  K  Y  G  L  P  K  H  Q  W  L  H  F  *  F  N  *  N  S  *  S  K  T  S  C  S  S  S  F  W  C  C  S  S  S  Y  C  C  I  F  Q :   *  I  L  D  G  R  D  H  G  F  T  G  I  K  R  D  W  I  A  K  L  P  S  S  R  C  F  P  Q  C  F  A  E  K  S  E  G  N  C  C  L  S  R  G  F  C  G  E  T  V  E  L  L  R  A  S  C  N  H  S  F  N  A  S  L  *  E  L  S  A  A  S  V  F  Y  *  K  S  S  P  K  L  D  C  Q  E  K  E  *  I  S  *  L  G  K  G  N  H  R  D  G  K  A </second_frame>
            <third_frame>   T  I  F  S  Y  L  L  E  Y  Q  E  S  M  A  Y  Q  N  I  N  G  C  I  S  D  S  I  E  I  L  D  P  K  P  L  A  V  V  A  S  G  V  V  H  P  P  I  V  A  S  F   : N  E  F  L  M  E  E  I  M  V  L  Q  E  S  K  G  I  G  L  P  N  F  L  P  R  G  V  F  L  N  V  L  Q  R  K  V  K  E  I  A  A  S  P  E  D  F  V  G  K  L  W  N  Y  L  E  R  V  V  I  I  V  L  M  H  H  C  E  N  Y  P  Q  L  Q  S  S  T  R  R  A  A  Q  N  L  I  A  K  K  K  N  E  S  V  D  W  V  R  E  I  I  G  M  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4811" stop="4961"/>
                    <exon start="6081" stop="6388"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIFSYLLEYQESMAYQNINGCISDSIEILDPKPLAVVASGVVHPPIVASFNEFLMEEIMVLQESKGIGLPNFLPRGVFLNVLQRKVKEIAASPEDFVGKLWNYLERVVIIVLMHHCENYPQLQSSTRRAAQNLIAKKKNESVDWVREIIGMEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="17136" PGL_stop="9812"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17136" e_stop="16922"/>
            <exon e_start="15585" e_stop="15534"/>
            <exon e_start="15171" e_stop="15098"/>
            <exon e_start="14136" e_stop="14035"/>
            <exon e_start="12697" e_stop="12557"/>
            <exon e_start="11505" e_stop="11454"/>
            <exon e_start="11246" e_stop="11173"/>
            <exon e_start="10291" e_stop="10202"/>
            <exon e_start="9883" e_stop="9812"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="0.995"/>
          <exon-intron don_prob="0.904" acc_prob="0.318" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.771" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.724" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.626" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="17136" e_stop="16922" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="16921" i_stop="15586" i_length="1336"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15585" e_stop="15534" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.904" acc_prob="0.318">
            <gDNA_intron_boundary i_start="15533" i_stop="15172" i_length="362"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15171" e_stop="15098" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.771">
            <gDNA_intron_boundary i_start="15097" i_stop="14137" i_length="961"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14136" e_stop="14035" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.957" acc_prob="0.946">
            <gDNA_intron_boundary i_start="14034" i_stop="12698" i_length="1337"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12697" e_stop="12557" e_length="141"/>
          </exon>
          <intron i_serial="5" don_prob="0.941" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12556" i_stop="11506" i_length="1051"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11505" e_stop="11454" e_length="52"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="11453" i_stop="11247" i_length="207"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="11246" e_stop="11173" e_length="74"/>
          </exon>
          <intron i_serial="7" don_prob="0.724" acc_prob="0.873">
            <gDNA_intron_boundary i_start="11172" i_stop="10292" i_length="881"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="10291" e_stop="10202" e_length="90"/>
          </exon>
          <intron i_serial="8" don_prob="0.626" acc_prob="0.981">
            <gDNA_intron_boundary i_start="10201" i_stop="9884" i_length="318"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="9883" e_stop="9812" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17136" stop="16922"/>
              <exon start="15585" stop="15534"/>
              <exon start="15171" stop="15098"/>
              <exon start="14136" stop="14035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17061" stop="16922"/>
              <exon start="15585" stop="15534"/>
              <exon start="15171" stop="15098"/>
              <exon start="14136" stop="14035"/>
              <exon start="12697" stop="12557"/>
              <exon start="11505" stop="11454"/>
              <exon start="11246" stop="11173"/>
              <exon start="10291" stop="10202"/>
              <exon start="9883" stop="9812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17039" stop="16922"/>
              <exon start="15585" stop="15534"/>
              <exon start="15171" stop="15098"/>
              <exon start="14136" stop="14035"/>
              <exon start="12697" stop="12557"/>
              <exon start="11505" stop="11454"/>
              <exon start="11246" stop="11173"/>
              <exon start="10291" stop="10226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15558" stop="15534"/>
              <exon start="15171" stop="15098"/>
              <exon start="14136" stop="14035"/>
              <exon start="12697" stop="12557"/>
              <exon start="11505" stop="11454"/>
              <exon start="11246" stop="11173"/>
              <exon start="10291" stop="10217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352103" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAATGGCCTTCTCACATTTTCTCCCCTTTTCAGTACGCTTCCTTTCTCTCTTCTGCAACACTCGAAGACGAAGACCGAATACTCAAAAATGGCAGCAACTTTAGCAATTGCATTGAAGAGTCTCTTCTCTGTGTTGGGATGTTTGATTACAGCCACCGTAATATACACCGTCGCCACTGATGGCCTTCCTTTCCGCATAGAACTCCTTACCCC : GTGGATGGCAGCTACCCTGATAGATTTCTACATCCACATATTTGTTATATGG : TCTTGGGTTGTCTACAAGGAATCAAACTGGATTACTGCAATACTTTGGGTGGTCTTGCTAGTATGTTTGGGAAG : CATTGCTACATGTGGCTACATCGTGTTGCAATTTCTTAAGCTTTCAACTCAGGAATCTTTACAGGATCCAATTTACTTTGTCCTATTACGACGTCAGGAAAA : GACTGAAACAGAACAACAGAAGAAATGTTCTCTTTTAACTGCAAGAATTCTATTTCCTGCTTTGGGCTGTCTGATGCTAGGGACATTGATTTACACCATTGTAACTGATGGTTCTCCATTTCGCAGAGATGTTTTTACTCC : GTGGGTGATAGCAACAGTGATTGATTTCTATGTTGGTGTTGTGGCTCTCTCG : GTTTGGGTTGCTTATAAGGAATCAAGTTGGCTGAGTGCAGCTTTATGGATAATACTTATAATTTGTTCTGGCAG : CATCAGCACATGTGCCTATATAGCTCTTCAGCTTTTCAATCTTTCATCTCAAGATCCCGTCTACCTTGTTCTTTTCAGCAGCCGCAACAG : AAAAAGGGTATGAAGTAACGTCTCGAACAGAGAGCATCGGAGAGGGTCAATTGAGGAAGAAGCTTTGTGGTT</gDNA_template>
            <first_frame> S  N  G  L  L  T  F  S  P  L  F  S  T  L  P  F  S  L  L  Q  H  S  K  T  K  T  E  Y  S  K  M  A  A  T  L  A  I  A  L  K  S  L  F  S  V  L  G  C  L  I  T  A  T  V  I  Y  T  V  A  T  D  G  L  P  F  R  I  E  L  L  T  P :   W  M  A  A  T  L  I  D  F  Y  I  H  I  F  V  I  W  :  S  W  V  V  Y  K  E  S  N  W  I  T  A  I  L  W  V  V  L  L  V  C  L  G  S :   I  A  T  C  G  Y  I  V  L  Q  F  L  K  L  S  T  Q  E  S  L  Q  D  P  I  Y  F  V  L  L  R  R  Q  E  K :   T  E  T  E  Q  Q  K  K  C  S  L  L  T  A  R  I  L  F  P  A  L  G  C  L  M  L  G  T  L  I  Y  T  I  V  T  D  G  S  P  F  R  R  D  V  F  T  P :   W  V  I  A  T  V  I  D  F  Y  V  G  V  V  A  L  S  :  V  W  V  A  Y  K  E  S  S  W  L  S  A  A  L  W  I  I  L  I  I  C  S  G  S :   I  S  T  C  A  Y  I  A  L  Q  L  F  N  L  S  S  Q  D  P  V  Y  L  V  L  F  S  S  R  N  R :   K  R  V  *  S  N  V  S  N  R  E  H  R  R  G  S  I  E  E  E  A  L  W   </first_frame>
            <second_frame>  A  M  A  F  S  H  F  L  P  F  S  V  R  F  L  S  L  F  C  N  T  R  R  R  R  P  N  T  Q  K  W  Q  Q  L  *  Q  L  H  *  R  V  S  S  L  C  W  D  V  *  L  Q  P  P  *  Y  T  P  S  P  L  M  A  F  L  S  A  *  N  S  L  P   : R  G  W  Q  L  P  *  *  I  S  T  S  T  Y  L  L  Y  G :   L  G  L  S  T  R  N  Q  T  G  L  L  Q  Y  F  G  W  S  C  *  Y  V  W  E   : A  L  L  H  V  A  T  S  C  C  N  F  L  S  F  Q  L  R  N  L  Y  R  I  Q  F  T  L  S  Y  Y  D  V  R  K   : R  L  K  Q  N  N  R  R  N  V  L  F  *  L  Q  E  F  Y  F  L  L  W  A  V  *  C  *  G  H  *  F  T  P  L  *  L  M  V  L  H  F  A  E  M  F  L  L   : R  G  *  *  Q  Q  *  L  I  S  M  L  V  L  W  L  S  R :   F  G  L  L  I  R  N  Q  V  G  *  V  Q  L  Y  G  *  Y  L  *  F  V  L  A   : A  S  A  H  V  P  I  *  L  F  S  F  S  I  F  H  L  K  I  P  S  T  L  F  F  S  A  A  A  T   : E  K  G  Y  E  V  T  S  R  T  E  S  I  G  E  G  Q  L  R  K  K  L  C  G  </second_frame>
            <third_frame>   Q  W  P  S  H  I  F  S  P  F  Q  Y  A  S  F  L  S  S  A  T  L  E  D  E  D  R  I  L  K  N  G  S  N  F  S  N  C  I  E  E  S  L  L  C  V  G  M  F  D  Y  S  H  R  N  I  H  R  R  H  *  W  P  S  F  P  H  R  T  P  Y  P  :  V  D  G  S  Y  P  D  R  F  L  H  P  H  I  C  Y  M   : V  L  G  C  L  Q  G  I  K  L  D  Y  C  N  T  L  G  G  L  A  S  M  F  G  K  :  H  C  Y  M  W  L  H  R  V  A  I  S  *  A  F  N  S  G  I  F  T  G  S  N  L  L  C  P  I  T  T  S  G  K  :  D  *  N  R  T  T  E  E  M  F  S  F  N  C  K  N  S  I  S  C  F  G  L  S  D  A  R  D  I  D  L  H  H  C  N  *  W  F  S  I  S  Q  R  C  F  Y  S  :  V  G  D  S  N  S  D  *  F  L  C  W  C  C  G  S  L   : G  L  G  C  L  *  G  I  K  L  A  E  C  S  F  M  D  N  T  Y  N  L  F  W  Q  :  H  Q  H  M  C  L  Y  S  S  S  A  F  Q  S  F  I  S  R  S  R  L  P  C  S  F  Q  Q  P  Q  Q  :  K  K  G  M  K  *  R  L  E  Q  R  A  S  E  R  V  N  *  G  R  S  F  V  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17136" stop="16922"/>
                    <exon start="15585" stop="15534"/>
                    <exon start="15171" stop="15098"/>
                    <exon start="14136" stop="14035"/>
                    <exon start="12697" stop="12557"/>
                    <exon start="11505" stop="11454"/>
                    <exon start="11246" stop="11173"/>
                    <exon start="10291" stop="10202"/>
                    <exon start="9883" stop="9871"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>810</number_coding_nucleotides>
                  <number_encoded_amino_acids>270</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNGLLTFSPLFSTLPFSLLQHSKTKTEYSKMAATLAIALKSLFSVLGCLITATVIYTVATDGLPFRIELLTPWMAATLIDFYIHIFVIWSWVVYKESNWITAILWVVLLVCLGSIATCGYIVLQFLKLSTQESLQDPIYFVLLRRQEKTETEQQKKCSLLTARILFPALGCLMLGTLIYTIVTDGSPFRRDVFTPWVIATVIDFYVGVVALSVWVAYKESSWLSAALWIILIICSGSISTCAYIALQLFNLSSQDPVYLVLFSSRNRKRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12408" e_stop="11949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12408" e_stop="11949" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12408" stop="11949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTGTTTGAACTATAATTAGATCTCCGCTCTGCTGCTTTCTAAATTGATGCACTTTATGGGGAAGTAGCATAAACCTCTCGTAACTGGAAGTTTTTGTGCTATTGTGGAGGAAAACTCCCTTTTCATTTATTCAATGTCATATCAGCATTTTATTTATTTAAGGAAGTATATATGTCTTCCTGGAATGAGTTCCTAAATGAGAGAATATCTGCACTACAGTGATTCGAAGGTTGGGATGAGGTTACTGAAAATGACTTGTGCTCTCAGAATGTATAAAATTTCTATTAATAATATTGCCTCTCTCATTTTTCATGAACAAGGACTATTGATGATTTCTTACCTCATGTTAATCGTTTAATCCTTATTTGTTTCTTACCGTGTTAACTTTAAATATTATAACATATGATTAGACTGATCTATGGTGAGCTTTATAACTTTTCCCTATGTAACATGATACT</gDNA_template>
            <first_frame> S  C  L  N  Y  N  *  I  S  A  L  L  L  S  K  L  M  H  F  M  G  K  *  H  K  P  L  V  T  G  S  F  C  A  I  V  E  E  N  S  L  F  I  Y  S  M  S  Y  Q  H  F  I  Y  L  R  K  Y  I  C  L  P  G  M  S  S  *  M  R  E  Y  L  H  Y  S  D  S  K  V  G  M  R  L  L  K  M  T  C  A  L  R  M  Y  K  I  S  I  N  N  I  A  S  L  I  F  H  E  Q  G  L  L  M  I  S  Y  L  M  L  I  V  *  S  L  F  V  S  Y  R  V  N  F  K  Y  Y  N  I  *  L  D  *  S  M  V  S  F  I  T  F  P  Y  V  T  *  Y  </first_frame>
            <second_frame>  L  V  *  T  I  I  R  S  P  L  C  C  F  L  N  *  C  T  L  W  G  S  S  I  N  L  S  *  L  E  V  F  V  L  L  W  R  K  T  P  F  S  F  I  Q  C  H  I  S  I  L  F  I  *  G  S  I  Y  V  F  L  E  *  V  P  K  *  E  N  I  C  T  T  V  I  R  R  L  G  *  G  Y  *  K  *  L  V  L  S  E  C  I  K  F  L  L  I  I  L  P  L  S  F  F  M  N  K  D  Y  *  *  F  L  T  S  C  *  S  F  N  P  Y  L  F  L  T  V  L  T  L  N  I  I  T  Y  D  *  T  D  L  W  *  A  L  *  L  F  P  M  *  H  D  T </second_frame>
            <third_frame>   L  F  E  L  *  L  D  L  R  S  A  A  F  *  I  D  A  L  Y  G  E  V  A  *  T  S  R  N  W  K  F  L  C  Y  C  G  G  K  L  P  F  H  L  F  N  V  I  S  A  F  Y  L  F  K  E  V  Y  M  S  S  W  N  E  F  L  N  E  R  I  S  A  L  Q  *  F  E  G  W  D  E  V  T  E  N  D  L  C  S  Q  N  V  *  N  F  Y  *  *  Y  C  L  S  H  F  S  *  T  R  T  I  D  D  F  L  P  H  V  N  R  L  I  L  I  C  F  L  P  C  *  L  *  I  L  *  H  M  I  R  L  I  Y  G  E  L  Y  N  F  S  L  C  N  M  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0066O12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="12760" e_stop="12557"/>
            <exon e_start="11505" e_stop="11454"/>
            <exon e_start="11246" e_stop="11173"/>
            <exon e_start="10291" e_stop="10202"/>
            <exon e_start="10077" e_stop="9992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.996" e_score="0.990"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="0.923"/>
          <exon-intron don_prob="0.724" acc_prob="0.873" e_score="0.973"/>
          <exon-intron don_prob="0.626" acc_prob="0.000" e_score="0.956"/>
          <exon-only e_score="0.837"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="12760" e_stop="12557" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12556" i_stop="11506" i_length="1051"/>
          </intron>
          <exon e_serial="2" e_score="0.923">
            <gDNA_exon_boundary e_start="11505" e_stop="11454" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="11453" i_stop="11247" i_length="207"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="11246" e_stop="11173" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.724" acc_prob="0.873">
            <gDNA_intron_boundary i_start="11172" i_stop="10292" i_length="881"/>
          </intron>
          <exon e_serial="4" e_score="0.956">
            <gDNA_exon_boundary e_start="10291" e_stop="10202" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.626" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10201" i_stop="10078" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="0.837">
            <gDNA_exon_boundary e_start="10077" e_stop="9992" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12760" stop="12557"/>
              <exon start="11505" stop="11454"/>
              <exon start="11246" stop="11173"/>
              <exon start="10291" stop="10202"/>
              <exon start="10077" stop="9992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405030" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTAGTTTTCTTTGTGAAAATGACCTTAACTTATAATGATCTGATGAGATGTTGTGATTTAGGACTGAAACAGAACAACAGAAGAAATGTTCTCTTTTAACTGCAAGAATTCTATTTCCTGCTTTGGGCTGTCTGATGCTAGGGACATTGATTTACACCATTGTAACTGATGGTTCTCCATTTCGCAGAGATGTTTTTACTCC : GTGGGTGATAGCAACAGTGATTGATTTCTATGTTGGTGTTGTGGCTCTCTCG : GTTTGGGTTGCTTATAAGGAATCAAGTTGGCTGAGTGCAGCTTTATGGATAATACTTATAATTTGTTCTGGCAG : CATCAGCACATGTGCCTATATAGCTCTTCAGCTTTTCAATCTTTCATCTCAAGATCCCGTCTACCTTGTTCTTTTCAGCAGCCGCAACAG : CAATTTGTAGTACGACAAATATACATCCTTGTTCTAGTTTAAAGTTGAACAAGATTTGGAATTTCCTTTCATTTGTGCGAGTGATT</gDNA_template>
            <first_frame> C  *  F  S  L  *  K  *  P  *  L  I  M  I  *  *  D  V  V  I  *  D  *  N  R  T  T  E  E  M  F  S  F  N  C  K  N  S  I  S  C  F  G  L  S  D  A  R  D  I  D  L  H  H  C  N  *  W  F  S  I  S  Q  R  C  F  Y  S  :  V  G  D  S  N  S  D  *  F  L  C  W  C  C  G  S  L   : G  L  G  C  L  *  G  I  K  L  A  E  C  S  F  M  D  N  T  Y  N  L  F  W  Q  :  H  Q  H  M  C  L  Y  S  S  S  A  F  Q  S  F  I  S  R  S  R  L  P  C  S  F  Q  Q  P  Q  Q  :  Q  F  V  V  R  Q  I  Y  I  L  V  L  V  *  S  *  T  R  F  G  I  S  F  H  L  C  E  *   </first_frame>
            <second_frame>  V  S  F  L  C  E  N  D  L  N  L  *  *  S  D  E  M  L  *  F  R  T  E  T  E  Q  Q  K  K  C  S  L  L  T  A  R  I  L  F  P  A  L  G  C  L  M  L  G  T  L  I  Y  T  I  V  T  D  G  S  P  F  R  R  D  V  F  T  P :   W  V  I  A  T  V  I  D  F  Y  V  G  V  V  A  L  S  :  V  W  V  A  Y  K  E  S  S  W  L  S  A  A  L  W  I  I  L  I  I  C  S  G  S :   I  S  T  C  A  Y  I  A  L  Q  L  F  N  L  S  S  Q  D  P  V  Y  L  V  L  F  S  S  R  N  S :   N  L  *  Y  D  K  Y  T  S  L  F  *  F  K  V  E  Q  D  L  E  F  P  F  I  C  A  S  D  </second_frame>
            <third_frame>   L  V  F  F  V  K  M  T  L  T  Y  N  D  L  M  R  C  C  D  L  G  L  K  Q  N  N  R  R  N  V  L  F  *  L  Q  E  F  Y  F  L  L  W  A  V  *  C  *  G  H  *  F  T  P  L  *  L  M  V  L  H  F  A  E  M  F  L  L   : R  G  *  *  Q  Q  *  L  I  S  M  L  V  L  W  L  S  R :   F  G  L  L  I  R  N  Q  V  G  *  V  Q  L  Y  G  *  Y  L  *  F  V  L  A   : A  S  A  H  V  P  I  *  L  F  S  F  S  I  F  H  L  K  I  P  S  T  L  F  F  S  A  A  A  T   : A  I  C  S  T  T  N  I  H  P  C  S  S  L  K  L  N  K  I  W  N  F  L  S  F  V  R  V  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12702" stop="12557"/>
                    <exon start="11505" stop="11454"/>
                    <exon start="11246" stop="11173"/>
                    <exon start="10291" stop="10202"/>
                    <exon start="10077" stop="10068"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRTETEQQKKCSLLTARILFPALGCLMLGTLIYTIVTDGSPFRRDVFTPWVIATVIDFYVGVVALSVWVAYKESSWLSAALWIILIICSGSISTCAYIALQLFNLSSQDPVYLVLFSSRNSNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="29000" PGL_stop="18676"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29000" e_stop="28805"/>
            <exon e_start="28655" e_stop="28629"/>
            <exon e_start="28365" e_stop="28266"/>
            <exon e_start="28180" e_stop="28034"/>
            <exon e_start="27655" e_stop="27575"/>
            <exon e_start="27424" e_stop="27282"/>
            <exon e_start="19138" e_stop="18676"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.423" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29000" e_stop="28805" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="28804" i_stop="28656" i_length="149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28655" e_stop="28629" e_length="27"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28628" i_stop="28366" i_length="263"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28365" e_stop="28266" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.423" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28265" i_stop="28181" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28180" e_stop="28034" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28033" i_stop="27656" i_length="378"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27655" e_stop="27575" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.848" acc_prob="0.995">
            <gDNA_intron_boundary i_start="27574" i_stop="27425" i_length="150"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27424" e_stop="27282" e_length="143"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27281" i_stop="19139" i_length="8143"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="19138" e_stop="18676" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29000" stop="28805"/>
              <exon start="28655" stop="28629"/>
              <exon start="28365" stop="28266"/>
              <exon start="28180" stop="28034"/>
              <exon start="27655" stop="27600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29000" stop="28805"/>
              <exon start="28655" stop="28629"/>
              <exon start="28365" stop="28266"/>
              <exon start="28180" stop="28125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28993" stop="28805"/>
              <exon start="28655" stop="28629"/>
              <exon start="28365" stop="28266"/>
              <exon start="28180" stop="28034"/>
              <exon start="27655" stop="27575"/>
              <exon start="27424" stop="27282"/>
              <exon start="19138" stop="19065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28984" stop="28805"/>
              <exon start="28655" stop="28629"/>
              <exon start="28365" stop="28266"/>
              <exon start="28180" stop="28034"/>
              <exon start="27655" stop="27575"/>
              <exon start="27424" stop="27282"/>
              <exon start="19138" stop="19057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28977" stop="28805"/>
              <exon start="28655" stop="28629"/>
              <exon start="28365" stop="28266"/>
              <exon start="28180" stop="28034"/>
              <exon start="27655" stop="27598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28953" stop="28805"/>
              <exon start="28655" stop="28629"/>
              <exon start="28365" stop="28266"/>
              <exon start="28180" stop="28034"/>
              <exon start="27655" stop="27586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28153" stop="28034"/>
              <exon start="27655" stop="27575"/>
              <exon start="27424" stop="27282"/>
              <exon start="19138" stop="18842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28123" stop="28034"/>
              <exon start="27655" stop="27575"/>
              <exon start="27424" stop="27282"/>
              <exon start="19138" stop="18676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28081" stop="28034"/>
              <exon start="27655" stop="27575"/>
              <exon start="27424" stop="27282"/>
              <exon start="19138" stop="18854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603792" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27359" stop="27282"/>
              <exon start="19138" stop="18837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234706" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATATCGAAATTGGCGCCGCTTTTCTCTGGTTTCTCTTTCTCTCTCTACAATCCCCTTTCTTCTCTCTTCTGAAAATTGTCAACCCAGATTTGAAATTCCCAAATTCCATATACAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGG : GGTTGGTAAAACGTCATTAATGAATCA : ATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACAAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAA : ATATGGGATACGGCCGGTCAAGAGAGATTCCAGAGTCTTGGAGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAG : GCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAGATGGTGGAAATAGCCGAGTG : GTTTCTGAGAAGAAAGCAAAGGAGTGGTGTACTTCTAAAGGGATACCTTACTTTGAGACATCAGCAAAAGAGGATATAAATGTTGATGCTGCATTCTTGTCTATTGCAAAAACTGCCTTGGCCAATGAGCACGAGCAGGATAT : ATACTTCCAAGGCATTCCAGAGGCAGTTTCAGAGACTGAACAAAGAGGTGGCTGTGCATGCTAAGGCGGATATAGTAATTCCATCGAGTGCCATACTTGATCCATGTTGTTGTGTATTATTTCTGCAACCGTATCATAACTCTCCGGCCATAGCCATTCTTTTGTACCCACTATTATATACTACTATTTGATTTCTTCAGTGTTGTTTTGGGAAGAGAAGCATCTTTTGTTACATTTCAGTTACTGGAAGGTAGAGAAACTCAGAAGGATTTCACTTAGTATTGCAGTTGGCTTTGACAGAGATTATAACTGTGCATCTTTTTTTATTTTCTCCATTGGGTGGTTGGTTTTATTGTATAATCTGAAAGAGCTGTATTTTTCTACATCTACGTATAAATAATGTGTTGGACTCGTAACTGCTACTGTGCTTCATTGCCATAAATTTTCGAAATGAATTTATTTT</gDNA_template>
            <first_frame> K  Y  R  N  W  R  R  F  S  L  V  S  L  S  L  S  T  I  P  F  L  L  S  S  E  N  C  Q  P  R  F  E  I  P  K  F  H  I  Q  G  S  L  L  I  S  L  S  P  C  L  F  V  E  E  P  C  L  K  L  S  S  L  A  I  V   : G  L  V  K  R  H  *  *  I   : N  M  Y  T  R  S  S  V  S  N  I  K  L  Q  L  E  L  I  S  *  Q  R  S  F  K  L  M  T  G  L  L  H  S  K :   Y  G  I  R  P  V  K  R  D  S  R  V  L  E  L  H  F  I  E  V  Q  I  A  V  F  W  S  M  M  L  M  *  C  D  P  L  I  T  L  T  I  G  M  K  N  F  S  N  R :   L  I  R  Q  T  L  K  H  F  L  S  Y  Y  W  G  T  R  L  I  *  M  V  E  I  A  E  W :   F  L  R  R  K  Q  R  S  G  V  L  L  K  G  Y  L  T  L  R  H  Q  Q  K  R  I  *  M  L  M  L  H  S  C  L  L  Q  K  L  P  W  P  M  S  T  S  R  I   : Y  T  S  K  A  F  Q  R  Q  F  Q  R  L  N  K  E  V  A  V  H  A  K  A  D  I  V  I  P  S  S  A  I  L  D  P  C  C  C  V  L  F  L  Q  P  Y  H  N  S  P  A  I  A  I  L  L  Y  P  L  L  Y  T  T  I  *  F  L  Q  C  C  F  G  K  R  S  I  F  C  Y  I  S  V  T  G  R  *  R  N  S  E  G  F  H  L  V  L  Q  L  A  L  T  E  I  I  T  V  H  L  F  L  F  S  P  L  G  G  W  F  Y  C  I  I  *  K  S  C  I  F  L  H  L  R  I  N  N  V  L  D  S  *  L  L  L  C  F  I  A  I  N  F  R  N  E  F  I   </first_frame>
            <second_frame>  N  I  E  I  G  A  A  F  L  W  F  L  F  L  S  L  Q  S  P  F  F  S  L  L  K  I  V  N  P  D  L  K  F  P  N  S  I  Y  R  V  H  F  *  F  L  F  R  H  V  Y  S  *  K  N  L  A  *  S  Y  R  P  W  R  *  W  :  G  W  *  N  V  I  N  E  S  :  I  C  T  Q  E  V  Q  S  A  I  *  S  Y  N  W  S  *  F  R  D  K  G  A  S  N  *  *  Q  A  C  Y  T  P   : N  M  G  Y  G  R  S  R  E  I  P  E  S  W  S  C  I  L  *  R  C  R  L  L  C  F  G  L  *  C  *  C  N  A  I  L  *  *  P  *  Q  L  A  *  R  I  S  Q  T   : G  *  S  A  R  P  *  N  I  S  F  H  I  T  G  E  Q  D  *  Y  R  W  W  K  *  P  S   : G  F  *  E  E  S  K  G  V  V  Y  F  *  R  D  T  L  L  *  D  I  S  K  R  G  Y  K  C  *  C  C  I  L  V  Y  C  K  N  C  L  G  Q  *  A  R  A  G  Y  :  I  L  P  R  H  S  R  G  S  F  R  D  *  T  K  R  W  L  C  M  L  R  R  I  *  *  F  H  R  V  P  Y  L  I  H  V  V  V  Y  Y  F  C  N  R  I  I  T  L  R  P  *  P  F  F  C  T  H  Y  Y  I  L  L  F  D  F  F  S  V  V  L  G  R  E  A  S  F  V  T  F  Q  L  L  E  G  R  E  T  Q  K  D  F  T  *  Y  C  S  W  L  *  Q  R  L  *  L  C  I  F  F  Y  F  L  H  W  V  V  G  F  I  V  *  S  E  R  A  V  F  F  Y  I  Y  V  *  I  M  C  W  T  R  N  C  Y  C  A  S  L  P  *  I  F  E  M  N  L  F  </second_frame>
            <third_frame>   I  S  K  L  A  P  L  F  S  G  F  S  F  S  L  Y  N  P  L  S  S  L  F  *  K  L  S  T  Q  I  *  N  S  Q  I  P  Y  T  G  F  T  F  D  F  S  F  A  M  S  I  R  R  R  T  L  L  K  V  I  V  L  G  D  S  G :   V  G  K  T  S  L  M  N  Q :   Y  V  H  K  K  F  S  Q  Q  Y  K  A  T  I  G  A  D  F  V  T  K  E  L  Q  I  D  D  R  L  V  T  L  Q  :  I  W  D  T  A  G  Q  E  R  F  Q  S  L  G  V  A  F  Y  R  G  A  D  C  C  V  L  V  Y  D  V  N  V  M  R  S  F  D  N  L  D  N  W  H  E  E  F  L  K  Q  :  A  N  P  P  D  P  K  T  F  P  F  I  L  L  G  N  K  I  D  I  D  G  G  N  S  R  V  :  V  S  E  K  K  A  K  E  W  C  T  S  K  G  I  P  Y  F  E  T  S  A  K  E  D  I  N  V  D  A  A  F  L  S  I  A  K  T  A  L  A  N  E  H  E  Q  D  I :   Y  F  Q  G  I  P  E  A  V  S  E  T  E  Q  R  G  G  C  A  C  *  G  G  Y  S  N  S  I  E  C  H  T  *  S  M  L  L  C  I  I  S  A  T  V  S  *  L  S  G  H  S  H  S  F  V  P  T  I  I  Y  Y  Y  L  I  S  S  V  L  F  W  E  E  K  H  L  L  L  H  F  S  Y  W  K  V  E  K  L  R  R  I  S  L  S  I  A  V  G  F  D  R  D  Y  N  C  A  S  F  F  I  F  S  I  G  W  L  V  L  L  Y  N  L  K  E  L  Y  F  S  T  S  T  Y  K  *  C  V  G  L  V  T  A  T  V  L  H  C  H  K  F  S  K  *  I  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28905" stop="28805"/>
                    <exon start="28655" stop="28629"/>
                    <exon start="28365" stop="28266"/>
                    <exon start="28180" stop="28034"/>
                    <exon start="27655" stop="27575"/>
                    <exon start="27424" stop="27282"/>
                    <exon start="19138" stop="19075"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSQIPYTGFTFDFSFAMSIRRRTLLKVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMRSFDNLDNWHEEFLKQANPPDPKTFPFILLGNKIDIDGGNSRVVSEKKAKEWCTSKGIPYFETSAKEDINVDAAFLSIAKTALANEHEQDIYFQGIPEAVSETEQRGGCAC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18999" stop="18739"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSGHSHSFVPTIIYYYLISSVLFWEEKHLLLHFSYWKVEKLRRISLSIAVGFDRDYNCASFFIFSIGWLVLLYNLKELYFSTSTYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29000" e_stop="28805"/>
            <exon e_start="28655" e_stop="28629"/>
            <exon e_start="28365" e_stop="28266"/>
            <exon e_start="28180" e_stop="28034"/>
            <exon e_start="27655" e_stop="27575"/>
            <exon e_start="27424" e_stop="27282"/>
            <exon e_start="26996" e_stop="26958"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.423" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="0.979"/>
          <exon-only e_score="0.487"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29000" e_stop="28805" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="28804" i_stop="28656" i_length="149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28655" e_stop="28629" e_length="27"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28628" i_stop="28366" i_length="263"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28365" e_stop="28266" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.423" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28265" i_stop="28181" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28180" e_stop="28034" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28033" i_stop="27656" i_length="378"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27655" e_stop="27575" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.848" acc_prob="0.995">
            <gDNA_intron_boundary i_start="27574" i_stop="27425" i_length="150"/>
          </intron>
          <exon e_serial="6" e_score="0.979">
            <gDNA_exon_boundary e_start="27424" e_stop="27282" e_length="143"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27281" i_stop="26997" i_length="285"/>
          </intron>
          <exon e_serial="7" e_score="0.487">
            <gDNA_exon_boundary e_start="26996" e_stop="26958" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29000" stop="28805"/>
              <exon start="28655" stop="28629"/>
              <exon start="28365" stop="28266"/>
              <exon start="28180" stop="28034"/>
              <exon start="27655" stop="27600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29000" stop="28805"/>
              <exon start="28655" stop="28629"/>
              <exon start="28365" stop="28266"/>
              <exon start="28180" stop="28125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28977" stop="28805"/>
              <exon start="28655" stop="28629"/>
              <exon start="28365" stop="28266"/>
              <exon start="28180" stop="28034"/>
              <exon start="27655" stop="27598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28972" stop="28805"/>
              <exon start="28655" stop="28629"/>
              <exon start="28365" stop="28266"/>
              <exon start="28180" stop="28034"/>
              <exon start="27655" stop="27575"/>
              <exon start="27424" stop="27282"/>
              <exon start="26996" stop="26958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28953" stop="28805"/>
              <exon start="28655" stop="28629"/>
              <exon start="28365" stop="28266"/>
              <exon start="28180" stop="28034"/>
              <exon start="27655" stop="27586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATATCGAAATTGGCGCCGCTTTTCTCTGGTTTCTCTTTCTCTCTCTACAATCCCCTTTCTTCTCTCTTCTGAAAATTGTCAACCCAGATTTGAAATTCCCAAATTCCATATACAGGGTTCACTTTTGATTTCTCTTTCGCCATGTCTATTCGTAGAAGAACCTTGCTTAAAGTTATCGTCCTTGGCGATAGTGG : GGTTGGTAAAACGTCATTAATGAATCA : ATATGTACACAAGAAGTTCAGTCAGCAATATAAAGCTACAATTGGAGCTGATTTCGTGACAAAGGAGCTTCAAATTGATGACAGGCTTGTTACACTCCAA : ATATGGGATACGGCCGGTCAAGAGAGATTCCAGAGTCTTGGAGTTGCATTTTATAGAGGTGCAGATTGCTGTGTTTTGGTCTATGATGTTAATGTAATGCGATCCTTTGATAACCTTGACAATTGGCATGAAGAATTTCTCAAACAG : GCTAATCCGCCAGACCCTAAAACATTTCCTTTCATATTACTGGGGAACAAGATTGATATAGATGGTGGAAATAGCCGAGTG : GTTTCTGAGAAGAAAGCAAAGGAGTGGTGTACTTCTAAAGGGATACCTTACTTTGAGACATCAGCAAAAGAGGATATAAATGTTGATGCTGCATTCTTGTCTATTGCAAAAACTGCCTTGGCCAATGAGCACGAGCAGGATAT : GATAATATTTTTCATGAGAGAGTCATTTTCTGATATTCA</gDNA_template>
            <first_frame> K  Y  R  N  W  R  R  F  S  L  V  S  L  S  L  S  T  I  P  F  L  L  S  S  E  N  C  Q  P  R  F  E  I  P  K  F  H  I  Q  G  S  L  L  I  S  L  S  P  C  L  F  V  E  E  P  C  L  K  L  S  S  L  A  I  V   : G  L  V  K  R  H  *  *  I   : N  M  Y  T  R  S  S  V  S  N  I  K  L  Q  L  E  L  I  S  *  Q  R  S  F  K  L  M  T  G  L  L  H  S  K :   Y  G  I  R  P  V  K  R  D  S  R  V  L  E  L  H  F  I  E  V  Q  I  A  V  F  W  S  M  M  L  M  *  C  D  P  L  I  T  L  T  I  G  M  K  N  F  S  N  R :   L  I  R  Q  T  L  K  H  F  L  S  Y  Y  W  G  T  R  L  I  *  M  V  E  I  A  E  W :   F  L  R  R  K  Q  R  S  G  V  L  L  K  G  Y  L  T  L  R  H  Q  Q  K  R  I  *  M  L  M  L  H  S  C  L  L  Q  K  L  P  W  P  M  S  T  S  R  I   : *  *  Y  F  S  *  E  S  H  F  L  I  F  </first_frame>
            <second_frame>  N  I  E  I  G  A  A  F  L  W  F  L  F  L  S  L  Q  S  P  F  F  S  L  L  K  I  V  N  P  D  L  K  F  P  N  S  I  Y  R  V  H  F  *  F  L  F  R  H  V  Y  S  *  K  N  L  A  *  S  Y  R  P  W  R  *  W  :  G  W  *  N  V  I  N  E  S  :  I  C  T  Q  E  V  Q  S  A  I  *  S  Y  N  W  S  *  F  R  D  K  G  A  S  N  *  *  Q  A  C  Y  T  P   : N  M  G  Y  G  R  S  R  E  I  P  E  S  W  S  C  I  L  *  R  C  R  L  L  C  F  G  L  *  C  *  C  N  A  I  L  *  *  P  *  Q  L  A  *  R  I  S  Q  T   : G  *  S  A  R  P  *  N  I  S  F  H  I  T  G  E  Q  D  *  Y  R  W  W  K  *  P  S   : G  F  *  E  E  S  K  G  V  V  Y  F  *  R  D  T  L  L  *  D  I  S  K  R  G  Y  K  C  *  C  C  I  L  V  Y  C  K  N  C  L  G  Q  *  A  R  A  G  Y  :  D  N  I  F  H  E  R  V  I  F  *  Y  S </second_frame>
            <third_frame>   I  S  K  L  A  P  L  F  S  G  F  S  F  S  L  Y  N  P  L  S  S  L  F  *  K  L  S  T  Q  I  *  N  S  Q  I  P  Y  T  G  F  T  F  D  F  S  F  A  M  S  I  R  R  R  T  L  L  K  V  I  V  L  G  D  S  G :   V  G  K  T  S  L  M  N  Q :   Y  V  H  K  K  F  S  Q  Q  Y  K  A  T  I  G  A  D  F  V  T  K  E  L  Q  I  D  D  R  L  V  T  L  Q  :  I  W  D  T  A  G  Q  E  R  F  Q  S  L  G  V  A  F  Y  R  G  A  D  C  C  V  L  V  Y  D  V  N  V  M  R  S  F  D  N  L  D  N  W  H  E  E  F  L  K  Q  :  A  N  P  P  D  P  K  T  F  P  F  I  L  L  G  N  K  I  D  I  D  G  G  N  S  R  V  :  V  S  E  K  K  A  K  E  W  C  T  S  K  G  I  P  Y  F  E  T  S  A  K  E  D  I  N  V  D  A  A  F  L  S  I  A  K  T  A  L  A  N  E  H  E  Q  D  M :   I  I  F  F  M  R  E  S  F  S  D  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28905" stop="28805"/>
                    <exon start="28655" stop="28629"/>
                    <exon start="28365" stop="28266"/>
                    <exon start="28180" stop="28034"/>
                    <exon start="27655" stop="27575"/>
                    <exon start="27424" stop="27282"/>
                    <exon start="26996" stop="26960"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSQIPYTGFTFDFSFAMSIRRRTLLKVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMRSFDNLDNWHEEFLKQANPPDPKTFPFILLGNKIDIDGGNSRVVSEKKAKEWCTSKGIPYFETSAKEDINVDAAFLSIAKTALANEHEQDMIIFFMRESFSDI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="19374" e_stop="19335"/>
            <exon e_start="19138" e_stop="18837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.575"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.575">
            <gDNA_exon_boundary e_start="19374" e_stop="19335" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19334" i_stop="19139" i_length="196"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="19138" e_stop="18837" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19374" stop="19335"/>
              <exon start="19138" stop="18837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234994" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAAAATCTGATACTGTCTAATAGAGACGATCACGTGAT : ATACTTCCAAGGCATTCCAGAGGCAGTTTCAGAGACTGAACAAAGAGGTGGCTGTGCATGCTAAGGCGGATATAGTAATTCCATCGAGTGCCATACTTGATCCATGTTGTTGTGTATTATTTCTGCAACCGTATCATAACTCTCCGGCCATAGCCATTCTTTTGTACCCACTATTATATACTACTATTTGATTTCTTCAGTGTTGTTTTGGGAAGAGAAGCATCTTTTGTTACATTTCAGTTACTGGAAGGTAGAGAAACTCAGAAGGATTTCACTTAGTATTGCAGTTGGCTTTGACAGAG</gDNA_template>
            <first_frame> L  K  I  *  Y  C  L  I  E  T  I  T  *   : Y  T  S  K  A  F  Q  R  Q  F  Q  R  L  N  K  E  V  A  V  H  A  K  A  D  I  V  I  P  S  S  A  I  L  D  P  C  C  C  V  L  F  L  Q  P  Y  H  N  S  P  A  I  A  I  L  L  Y  P  L  L  Y  T  T  I  *  F  L  Q  C  C  F  G  K  R  S  I  F  C  Y  I  S  V  T  G  R  *  R  N  S  E  G  F  H  L  V  L  Q  L  A  L  T  E </first_frame>
            <second_frame>  *  K  S  D  T  V  *  *  R  R  S  R  D  :  I  L  P  R  H  S  R  G  S  F  R  D  *  T  K  R  W  L  C  M  L  R  R  I  *  *  F  H  R  V  P  Y  L  I  H  V  V  V  Y  Y  F  C  N  R  I  I  T  L  R  P  *  P  F  F  C  T  H  Y  Y  I  L  L  F  D  F  F  S  V  V  L  G  R  E  A  S  F  V  T  F  Q  L  L  E  G  R  E  T  Q  K  D  F  T  *  Y  C  S  W  L  *  Q   </second_frame>
            <third_frame>   K  N  L  I  L  S  N  R  D  D  H  V  I :   Y  F  Q  G  I  P  E  A  V  S  E  T  E  Q  R  G  G  C  A  C  *  G  G  Y  S  N  S  I  E  C  H  T  *  S  M  L  L  C  I  I  S  A  T  V  S  *  L  S  G  H  S  H  S  F  V  P  T  I  I  Y  Y  Y  L  I  S  S  V  L  F  W  E  E  K  H  L  L  L  H  F  S  Y  W  K  V  E  K  L  R  R  I  S  L  S  I  A  V  G  F  D  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0066O12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="18779" PGL_stop="19135"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18779" e_stop="19135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="18779" e_stop="19135" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18779" stop="19135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606112" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATACAATAAAACCAACCACCCAATGGAGAAAATAAAAAAAGATGCACAGTTATAATCTCTGTCAAAGCCAACTGCAATACTAAGTGAAATCCTTCTGAGTTTCTCTACCTTCCAGTAACTGAAATGTAACAAAAGATGCTTCTCTTCCCAAAACAACACTGAAGAAATCAAATAGTAGTATATAATAGTGGGTACAAAAGAATGGCTATGGCCGGAGAGTTATGATACGGTTGCAGAAATAATACACAACAACATGGATCAAGTATGGCACTCGATGGAATTACTATATCCGCCTTAGCATGCACAGCCACCTCTTTGTTCAGTCTCTGAAACTGCCTCTGGAATGCCTTGGAAG</gDNA_template>
            <first_frame> L  Y  N  K  T  N  H  P  M  E  K  I  K  K  D  A  Q  L  *  S  L  S  K  P  T  A  I  L  S  E  I  L  L  S  F  S  T  F  Q  *  L  K  C  N  K  R  C  F  S  S  Q  N  N  T  E  E  I  K  *  *  Y  I  I  V  G  T  K  E  W  L  W  P  E  S  Y  D  T  V  A  E  I  I  H  N  N  M  D  Q  V  W  H  S  M  E  L  L  Y  P  P  *  H  A  Q  P  P  L  C  S  V  S  E  T  A  S  G  M  P  W  K </first_frame>
            <second_frame>  Y  T  I  K  P  T  T  Q  W  R  K  *  K  K  M  H  S  Y  N  L  C  Q  S  Q  L  Q  Y  *  V  K  S  F  *  V  S  L  P  S  S  N  *  N  V  T  K  D  A  S  L  P  K  T  T  L  K  K  S  N  S  S  I  *  *  W  V  Q  K  N  G  Y  G  R  R  V  M  I  R  L  Q  K  *  Y  T  T  T  W  I  K  Y  G  T  R  W  N  Y  Y  I  R  L  S  M  H  S  H  L  F  V  Q  S  L  K  L  P  L  E  C  L  G   </second_frame>
            <third_frame>   I  Q  *  N  Q  P  P  N  G  E  N  K  K  R  C  T  V  I  I  S  V  K  A  N  C  N  T  K  *  N  P  S  E  F  L  Y  L  P  V  T  E  M  *  Q  K  M  L  L  F  P  K  Q  H  *  R  N  Q  I  V  V  Y  N  S  G  Y  K  R  M  A  M  A  G  E  L  *  Y  G  C  R  N  N  T  Q  Q  H  G  S  S  M  A  L  D  G  I  T  I  S  A  L  A  C  T  A  T  S  L  F  S  L  *  N  C  L  W  N  A  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0066O12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="33859" PGL_stop="33008"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33859" e_stop="33444"/>
            <exon e_start="33154" e_stop="33008"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.948" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33859" e_stop="33444" e_length="416"/>
          </exon>
          <intron i_serial="1" don_prob="0.948" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33443" i_stop="33155" i_length="289"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33154" e_stop="33008" e_length="147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33859" stop="33444"/>
              <exon start="33154" stop="33063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33857" stop="33444"/>
              <exon start="33154" stop="33137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33852" stop="33444"/>
              <exon start="33154" stop="33064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33792" stop="33444"/>
              <exon start="33154" stop="33008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33792" stop="33444"/>
              <exon start="33154" stop="33024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204957" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACATATTCTATCAAAGACTCTTTTAAAGTCTTTCTTCTCAAAAATAATAGTATTAGAGACCATGTTTGGCTCTTCCACTTCCCAAGAAACAACAAATGTCATTTCTCATCAACATTATCAAACCATAAACCCTAATTTTTATGCTTTTCATGATCCTCTTATCAACATGAATCAAGATCATGTCCACAATAATAATTATAATAAGTATCAAGATTATGACACTTCATTTCTTGATTTGTTTGTTGATGGTGATCAAGAATATTATTCCAATTACACAAACAATAATGCTTCAATTTATTTAGAAAATCCCTTCAAGCAACAAGAGATAAGTAGTAGTACCTATAGTACTAGTGGAAACTCATCATCAGCTAGTTCATTTGATGCCACACCAACACATGTTCACATGAATAATGA : AAATACAAGCATAGGGATTGAGAAAGAAAAAAAAGGTGAAAAACATGCAATTGCTTTTAGAACAAAAACACAACTTGAGACCTTGGATGATGGATACAAATGGAGGAAATATGGGAAGAAGAAAGTGAAAACCAACATAAATCTAAG</gDNA_template>
            <first_frame> S  H  I  L  S  K  T  L  L  K  S  F  F  S  K  I  I  V  L  E  T  M  F  G  S  S  T  S  Q  E  T  T  N  V  I  S  H  Q  H  Y  Q  T  I  N  P  N  F  Y  A  F  H  D  P  L  I  N  M  N  Q  D  H  V  H  N  N  N  Y  N  K  Y  Q  D  Y  D  T  S  F  L  D  L  F  V  D  G  D  Q  E  Y  Y  S  N  Y  T  N  N  N  A  S  I  Y  L  E  N  P  F  K  Q  Q  E  I  S  S  S  T  Y  S  T  S  G  N  S  S  S  A  S  S  F  D  A  T  P  T  H  V  H  M  N  N  E :   N  T  S  I  G  I  E  K  E  K  K  G  E  K  H  A  I  A  F  R  T  K  T  Q  L  E  T  L  D  D  G  Y  K  W  R  K  Y  G  K  K  K  V  K  T  N  I  N  L   </first_frame>
            <second_frame>  H  I  F  Y  Q  R  L  F  *  S  L  S  S  Q  K  *  *  Y  *  R  P  C  L  A  L  P  L  P  K  K  Q  Q  M  S  F  L  I  N  I  I  K  P  *  T  L  I  F  M  L  F  M  I  L  L  S  T  *  I  K  I  M  S  T  I  I  I  I  I  S  I  K  I  M  T  L  H  F  L  I  C  L  L  M  V  I  K  N  I  I  P  I  T  Q  T  I  M  L  Q  F  I  *  K  I  P  S  S  N  K  R  *  V  V  V  P  I  V  L  V  E  T  H  H  Q  L  V  H  L  M  P  H  Q  H  M  F  T  *  I  M   : K  I  Q  A  *  G  L  R  K  K  K  K  V  K  N  M  Q  L  L  L  E  Q  K  H  N  L  R  P  W  M  M  D  T  N  G  G  N  M  G  R  R  K  *  K  P  T  *  I  *  </second_frame>
            <third_frame>   T  Y  S  I  K  D  S  F  K  V  F  L  L  K  N  N  S  I  R  D  H  V  W  L  F  H  F  P  R  N  N  K  C  H  F  S  S  T  L  S  N  H  K  P  *  F  L  C  F  S  *  S  S  Y  Q  H  E  S  R  S  C  P  Q  *  *  L  *  *  V  S  R  L  *  H  F  I  S  *  F  V  C  *  W  *  S  R  I  L  F  Q  L  H  K  Q  *  C  F  N  L  F  R  K  S  L  Q  A  T  R  D  K  *  *  Y  L  *  Y  *  W  K  L  I  I  S  *  F  I  *  C  H  T  N  T  C  S  H  E  *  *  :  K  Y  K  H  R  D  *  E  R  K  K  R  *  K  T  C  N  C  F  *  N  K  N  T  T  *  D  L  G  *  W  I  Q  M  E  E  I  W  E  E  E  S  E  N  Q  H  K  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33859" stop="33444"/>
                    <exon start="33154" stop="33010"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHILSKTLLKSFFSKIIVLETMFGSSTSQETTNVISHQHYQTINPNFYAFHDPLINMNQDHVHNNNYNKYQDYDTSFLDLFVDGDQEYYSNYTNNNASIYLENPFKQQEISSSTYSTSGNSSSASSFDATPTHVHMNNENTSIGIEKEKKGEKHAIAFRTKTQLETLDDGYKWRKYGKKKVKTNINL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="48957" PGL_stop="45043"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48957" e_stop="48498"/>
            <exon e_start="46734" e_stop="46316"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48957" e_stop="48498" e_length="460"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763"/>
          </intron>
          <exon e_serial="2" e_score="0.924">
            <gDNA_exon_boundary e_start="46734" e_stop="46316" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48957" stop="48498"/>
              <exon start="46734" stop="46659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48957" stop="48498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48956" stop="48498"/>
              <exon start="46734" stop="46621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48956" stop="48503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48949" stop="48498"/>
              <exon start="46734" stop="46587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48933" stop="48498"/>
              <exon start="46734" stop="46560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48923" stop="48498"/>
              <exon start="46734" stop="46531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48919" stop="48600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48919" stop="48607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48917" stop="48498"/>
              <exon start="46734" stop="46498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48917" stop="48498"/>
              <exon start="46734" stop="46658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48915" stop="48498"/>
              <exon start="46734" stop="46400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48893" stop="48498"/>
              <exon start="46734" stop="46651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48882" stop="48498"/>
              <exon start="46734" stop="46316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48873" stop="48498"/>
              <exon start="46734" stop="46570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48719" stop="48498"/>
              <exon start="46734" stop="46428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592789" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48710" stop="48498"/>
              <exon start="46734" stop="46551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48609" stop="48498"/>
              <exon start="46734" stop="46398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420794" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48591" stop="48498"/>
              <exon start="46734" stop="46525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48552" stop="48498"/>
              <exon start="46734" stop="46398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46676" stop="46403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46654" stop="46403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237032" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGACGCCTCCACCCCCACCCACCCATCCCCCCGCGGCTCTTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAG : GACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGAAGAGGACCAAGGATTTCTTTGGAAAACGCCCGTGATGAACTGCTGCTTAACCACAGGCAACTAAATTTTTTCGAAATTTTTGCATGCTTTGTTTGTGCTTTATACTATAGTTTTTGGATTCACATGTTATATATATATAAGCTAATCTAATCTTATAATTCAGTCGTGTGCATGCCTTTCTTCCTCCTTTTTTTTTTTCTTGTTGGAGAATTTTTCATGATCACTGTGAATTGTCTGGCAATGA</gDNA_template>
            <first_frame> L  T  P  P  P  P  P  T  H  P  P  A  A  L  L  S  L  L  F  P  L  C  H  R  R  P  L  N  D  D  L  N  H  G  R  D  R  R  S  I  H  R  R  R  *  D  V  S  T  V  I  E  P  E  N  R  P  D  P  V  N  P  D  *  V  C  *  D  Q  G  P  G  D  Q  G  P  S  V  *  A  R  E  G  S  D  R  R  I  H  V  V  L  R  W  I  *  A  R  P  A  R  G  S  *  Y  S  R  Q  I  R  V  Q  I  G  L  C  I  Q  T  G  D  W  P  R  C  S  Y  Q  I  Q  S  P  *  R  T  I  D  S  N  L  *  R  W  I  G  D  P  Y  *  W  R  T  *   : G  L  V  D  P  T  Y  Y  Q  D  I  G  W  C  C  S  D  H  P  I  D  S  N  G  D  E  R  V  S  R  M  G  Q  K  V  E  H  H  W  W  *  Y  P  T  M  G  P  G  C  C  G  Y  S  V  H  A  H  K  E  E  D  Q  G  F  L  W  K  T  P  V  M  N  C  C  L  T  T  G  N  *  I  F  S  K  F  L  H  A  L  F  V  L  Y  T  I  V  F  G  F  T  C  Y  I  Y  I  S  *  S  N  L  I  I  Q  S  C  A  C  L  S  S  S  F  F  F  F  L  L  E  N  F  S  *  S  L  *  I  V  W  Q  * </first_frame>
            <second_frame>  *  R  L  H  P  H  P  P  I  P  P  R  L  F  S  P  F  F  F  L  S  V  I  A  G  H  S  T  T  I  S  I  M  V  E  I  E  E  A  S  T  G  A  D  E  M  S  P  L  L  S  N  P  K  T  D  P  I  P  S  T  R  T  K  S  V  K  T  K  V  P  E  I  K  V  H  L  Y  K  Q  G  K  G  P  I  D  E  F  T  S  S  L  G  G  F  E  Q  D  Q  L  E  V  R  D  I  L  D  K  Y  G  F  K  S  V  Y  A  F  K  P  E  T  G  R  G  V  P  I  R  F  N  P  R  N  G  R  S  I  L  T  Y  R  D  G  S  E  I  H  I  D  G  E  P  K  :  D  S  L  I  Q  P  I  T  R  I  L  V  G  V  A  V  I  T  L  L  I  V  M  V  M  K  E  S  P  E  W  A  K  K  L  N  I  T  G  G  N  I  P  P  W  V  L  A  A  A  V  I  L  F  T  R  I  R  K  R  T  K  D  F  F  G  K  R  P  *  *  T  A  A  *  P  Q  A  T  K  F  F  R  N  F  C  M  L  C  L  C  F  I  L  *  F  L  D  S  H  V  I  Y  I  *  A  N  L  I  L  *  F  S  R  V  H  A  F  L  P  P  F  F  F  S  C  W  R  I  F  H  D  H  C  E  L  S  G  N   </second_frame>
            <third_frame>   D  A  S  T  P  T  H  P  S  P  R  G  S  S  L  P  S  F  S  S  L  S  S  P  A  T  Q  R  R  S  Q  S  W  *  R  S  K  K  H  P  P  A  P  M  R  C  L  H  C  Y  R  T  R  K  P  T  R  S  R  Q  P  G  L  S  L  L  R  P  R  S  R  R  S  R  S  I  C  I  S  K  G  R  V  R  S  T  N  S  R  R  P  *  V  D  L  S  K  T  S  *  R  F  V  I  F  *  T  N  T  G  S  N  R  S  M  H  S  N  R  R  L  A  E  V  F  L  S  D  S  I  P  V  T  D  D  R  F  *  P  I  E  M  D  R  R  S  I  L  M  E  N  L  R :   T  R  *  S  N  L  L  P  G  Y  W  L  V  L  Q  *  S  P  Y  *  *  *  W  *  *  K  S  L  Q  N  G  P  K  S  *  T  S  L  V  V  I  S  H  H  G  S  W  L  L  R  L  F  C  S  R  A  *  G  R  G  P  R  I  S  L  E  N  A  R  D  E  L  L  L  N  H  R  Q  L  N  F  F  E  I  F  A  C  F  V  C  A  L  Y  Y  S  F  W  I  H  M  L  Y  I  Y  K  L  I  *  S  Y  N  S  V  V  C  M  P  F  F  L  L  F  F  F  L  V  G  E  F  F  M  I  T  V  N  C  L  A  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48953" stop="48498"/>
                    <exon start="46734" stop="46525"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLHPHPPIPPRLFSPFFFLSVIAGHSTTISIMVEIEEASTGADEMSPLLSNPKTDPIPSTRTKSVKTKVPEIKVHLYKQGKGPIDEFTSSLGGFEQDQLEVRDILDKYGFKSVYAFKPETGRGVPIRFNPRNGRSILTYRDGSEIHIDGEPKDSLIQPITRILVGVAVITLLIVMVMKESPEWAKKLNITGGNIPPWVLAAAVILFTRIRKRTKDFFGKRP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48957" e_stop="48498"/>
            <exon e_start="46734" e_stop="46504"/>
            <exon e_start="45535" e_stop="45393"/>
            <exon e_start="45287" e_stop="45043"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.857" acc_prob="0.990" e_score="0.971"/>
          <exon-intron don_prob="0.057" acc_prob="0.949" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48957" e_stop="48498" e_length="460"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="48497" i_stop="46735" i_length="1763"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="46734" e_stop="46504" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.857" acc_prob="0.990">
            <gDNA_intron_boundary i_start="46503" i_stop="45536" i_length="968"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45535" e_stop="45393" e_length="143"/>
          </exon>
          <intron i_serial="3" don_prob="0.057" acc_prob="0.949">
            <gDNA_intron_boundary i_start="45392" i_stop="45288" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="45287" e_stop="45043" e_length="245"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48957" stop="48498"/>
              <exon start="46734" stop="46659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48957" stop="48498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48956" stop="48498"/>
              <exon start="46734" stop="46621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48956" stop="48503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48949" stop="48498"/>
              <exon start="46734" stop="46587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48933" stop="48498"/>
              <exon start="46734" stop="46560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48923" stop="48498"/>
              <exon start="46734" stop="46531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48919" stop="48600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48919" stop="48607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48917" stop="48498"/>
              <exon start="46734" stop="46658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48893" stop="48498"/>
              <exon start="46734" stop="46651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48873" stop="48498"/>
              <exon start="46734" stop="46570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48710" stop="48498"/>
              <exon start="46734" stop="46551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48591" stop="48498"/>
              <exon start="46734" stop="46525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46552" stop="46504"/>
              <exon start="45535" stop="45393"/>
              <exon start="45287" stop="45096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45509" stop="45393"/>
              <exon start="45287" stop="45073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45508" stop="45393"/>
              <exon start="45287" stop="45043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45413" stop="45393"/>
              <exon start="45287" stop="45049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352181" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGACGCCTCCACCCCCACCCACCCATCCCCCCGCGGCTCTTCTCTCCCTTCTTTTTCCTCTCTGTCATCGCCGGCCACTCAACGACGATCTCAATCATGGTAGAGATCGAAGAAGCATCCACCGGCGCCGATGAGATGTCTCCACTGTTATCGAACCCGAAAACCGACCCGATCCCGTCAACCCGGACTAAGTCTGTTAAGACCAAGGTCCCGGAGATCAAGGTCCATCTGTATAAGCAAGGGAAGGGTCCGATCGACGAATTCACGTCGTCCTTAGGTGGATTTGAGCAAGACCAGCTAGAGGTTCGTGATATTCTAGACAAATACGGGTTCAAATCGGTCTATGCATTCAAACCGGAGACTGGCCGAGGTGTTCCTATCAGATTCAATCCCCGTAACGGACGATCGATTCTAACCTATAGAGATGGATCGGAGATCCATATTGATGGAGAACCTAAG : GACTCGTTGATCCAACCTATTACCAGGATATTGGTTGGTGTTGCAGTGATCACCCTATTGATAGTAATGGTGATGAAAGAGTCTCCAGAATGGGCCAAAAAGTTGAACATCACTGGTGGTAATATCCCACCATGGGTCCTGGCTGCTGCGGTTATTCTGTTCACGCGCATAAGGAAGAGGACCAAGGATTTCTTTGGAAAACGCCCGTGATGAACTGCTGCTTAACCACAG : GGATCTTTTAACAGCACTGGCTTGGTTGTCTCATCAAAGCTGCCTAGATTCTCCGACATGTACACACTTACAGTAGAAAGTGCTGATCCCAAGTCCATTTCCGCGAGGCCAAAAGTTGAATTTACCAAGAGCGTCACAAAATG : GTTTGCCGAAGATGGAGTTCTAGTTGAGGGCCTATTCTGGAAAGATGTTGAAGCCTTAGTTAACGATTATGCTAAGGAACACAAAAAGAGCAAATAGATTCAATTTCAAACATTTTGATAGGAATGTGGATGGCATGGATAGCCAATGAGATTGAAAACATCGGTTTATGACTTACTGGATTAATATCATCTATATCATTGTTGAAGAAAATTTAATCCAATTTTCATCATAGTTTTATATTTTG</gDNA_template>
            <first_frame> L  T  P  P  P  P  P  T  H  P  P  A  A  L  L  S  L  L  F  P  L  C  H  R  R  P  L  N  D  D  L  N  H  G  R  D  R  R  S  I  H  R  R  R  *  D  V  S  T  V  I  E  P  E  N  R  P  D  P  V  N  P  D  *  V  C  *  D  Q  G  P  G  D  Q  G  P  S  V  *  A  R  E  G  S  D  R  R  I  H  V  V  L  R  W  I  *  A  R  P  A  R  G  S  *  Y  S  R  Q  I  R  V  Q  I  G  L  C  I  Q  T  G  D  W  P  R  C  S  Y  Q  I  Q  S  P  *  R  T  I  D  S  N  L  *  R  W  I  G  D  P  Y  *  W  R  T  *   : G  L  V  D  P  T  Y  Y  Q  D  I  G  W  C  C  S  D  H  P  I  D  S  N  G  D  E  R  V  S  R  M  G  Q  K  V  E  H  H  W  W  *  Y  P  T  M  G  P  G  C  C  G  Y  S  V  H  A  H  K  E  E  D  Q  G  F  L  W  K  T  P  V  M  N  C  C  L  T  T   : G  I  F  *  Q  H  W  L  G  C  L  I  K  A  A  *  I  L  R  H  V  H  T  Y  S  R  K  C  *  S  Q  V  H  F  R  E  A  K  S  *  I  Y  Q  E  R  H  K  M  :  V  C  R  R  W  S  S  S  *  G  P  I  L  E  R  C  *  S  L  S  *  R  L  C  *  G  T  Q  K  E  Q  I  D  S  I  S  N  I  L  I  G  M  W  M  A  W  I  A  N  E  I  E  N  I  G  L  *  L  T  G  L  I  S  S  I  S  L  L  K  K  I  *  S  N  F  H  H  S  F  I  F   </first_frame>
            <second_frame>  *  R  L  H  P  H  P  P  I  P  P  R  L  F  S  P  F  F  F  L  S  V  I  A  G  H  S  T  T  I  S  I  M  V  E  I  E  E  A  S  T  G  A  D  E  M  S  P  L  L  S  N  P  K  T  D  P  I  P  S  T  R  T  K  S  V  K  T  K  V  P  E  I  K  V  H  L  Y  K  Q  G  K  G  P  I  D  E  F  T  S  S  L  G  G  F  E  Q  D  Q  L  E  V  R  D  I  L  D  K  Y  G  F  K  S  V  Y  A  F  K  P  E  T  G  R  G  V  P  I  R  F  N  P  R  N  G  R  S  I  L  T  Y  R  D  G  S  E  I  H  I  D  G  E  P  K  :  D  S  L  I  Q  P  I  T  R  I  L  V  G  V  A  V  I  T  L  L  I  V  M  V  M  K  E  S  P  E  W  A  K  K  L  N  I  T  G  G  N  I  P  P  W  V  L  A  A  A  V  I  L  F  T  R  I  R  K  R  T  K  D  F  F  G  K  R  P  *  *  T  A  A  *  P  Q  :  G  S  F  N  S  T  G  L  V  V  S  S  K  L  P  R  F  S  D  M  Y  T  L  T  V  E  S  A  D  P  K  S  I  S  A  R  P  K  V  E  F  T  K  S  V  T  K  W :   F  A  E  D  G  V  L  V  E  G  L  F  W  K  D  V  E  A  L  V  N  D  Y  A  K  E  H  K  K  S  K  *  I  Q  F  Q  T  F  *  *  E  C  G  W  H  G  *  P  M  R  L  K  T  S  V  Y  D  L  L  D  *  Y  H  L  Y  H  C  *  R  K  F  N  P  I  F  I  I  V  L  Y  F  </second_frame>
            <third_frame>   D  A  S  T  P  T  H  P  S  P  R  G  S  S  L  P  S  F  S  S  L  S  S  P  A  T  Q  R  R  S  Q  S  W  *  R  S  K  K  H  P  P  A  P  M  R  C  L  H  C  Y  R  T  R  K  P  T  R  S  R  Q  P  G  L  S  L  L  R  P  R  S  R  R  S  R  S  I  C  I  S  K  G  R  V  R  S  T  N  S  R  R  P  *  V  D  L  S  K  T  S  *  R  F  V  I  F  *  T  N  T  G  S  N  R  S  M  H  S  N  R  R  L  A  E  V  F  L  S  D  S  I  P  V  T  D  D  R  F  *  P  I  E  M  D  R  R  S  I  L  M  E  N  L  R :   T  R  *  S  N  L  L  P  G  Y  W  L  V  L  Q  *  S  P  Y  *  *  *  W  *  *  K  S  L  Q  N  G  P  K  S  *  T  S  L  V  V  I  S  H  H  G  S  W  L  L  R  L  F  C  S  R  A  *  G  R  G  P  R  I  S  L  E  N  A  R  D  E  L  L  L  N  H  R :   D  L  L  T  A  L  A  W  L  S  H  Q  S  C  L  D  S  P  T  C  T  H  L  Q  *  K  V  L  I  P  S  P  F  P  R  G  Q  K  L  N  L  P  R  A  S  Q  N   : G  L  P  K  M  E  F  *  L  R  A  Y  S  G  K  M  L  K  P  *  L  T  I  M  L  R  N  T  K  R  A  N  R  F  N  F  K  H  F  D  R  N  V  D  G  M  D  S  Q  *  D  *  K  H  R  F  M  T  Y  W  I  N  I  I  Y  I  I  V  E  E  N  L  I  Q  F  S  S  *  F  Y  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48953" stop="48498"/>
                    <exon start="46734" stop="46525"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLHPHPPIPPRLFSPFFFLSVIAGHSTTISIMVEIEEASTGADEMSPLLSNPKTDPIPSTRTKSVKTKVPEIKVHLYKQGKGPIDEFTSSLGGFEQDQLEVRDILDKYGFKSVYAFKPETGRGVPIRFNPRNGRSILTYRDGSEIHIDGEPKDSLIQPITRILVGVAVITLLIVMVMKESPEWAKKLNITGGNIPPWVLAAAVILFTRIRKRTKDFFGKRP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46509" stop="46504"/>
                    <exon start="45535" stop="45393"/>
                    <exon start="45287" stop="45191"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQGSFNSTGLVVSSKLPRFSDMYTLTVESADPKSISARPKVEFTKSVTKWFAEDGVLVEGLFWKDVEALVNDYAKEHKKSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45537" e_stop="45393"/>
            <exon e_start="45287" e_stop="45043"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.057" acc_prob="0.949" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45537" e_stop="45393" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.057" acc_prob="0.949">
            <gDNA_intron_boundary i_start="45392" i_stop="45288" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="45287" e_stop="45043" e_length="245"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45537" stop="45393"/>
              <exon start="45287" stop="45043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45509" stop="45393"/>
              <exon start="45287" stop="45073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45508" stop="45393"/>
              <exon start="45287" stop="45043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45413" stop="45393"/>
              <exon start="45287" stop="45049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352181" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGATCTTTTAACAGCACTGGCTTGGTTGTCTCATCAAAGCTGCCTAGATTCTCCGACATGTACACACTTACAGTAGAAAGTGCTGATCCCAAGTCCATTTCCGCGAGGCCAAAAGTTGAATTTACCAAGAGCGTCACAAAATG : GTTTGCCGAAGATGGAGTTCTAGTTGAGGGCCTATTCTGGAAAGATGTTGAAGCCTTAGTTAACGATTATGCTAAGGAACACAAAAAGAGCAAATAGATTCAATTTCAAACATTTTGATAGGAATGTGGATGGCATGGATAGCCAATGAGATTGAAAACATCGGTTTATGACTTACTGGATTAATATCATCTATATCATTGTTGAAGAAAATTTAATCCAATTTTCATCATAGTTTTATATTTTG</gDNA_template>
            <first_frame> R  D  L  L  T  A  L  A  W  L  S  H  Q  S  C  L  D  S  P  T  C  T  H  L  Q  *  K  V  L  I  P  S  P  F  P  R  G  Q  K  L  N  L  P  R  A  S  Q  N   : G  L  P  K  M  E  F  *  L  R  A  Y  S  G  K  M  L  K  P  *  L  T  I  M  L  R  N  T  K  R  A  N  R  F  N  F  K  H  F  D  R  N  V  D  G  M  D  S  Q  *  D  *  K  H  R  F  M  T  Y  W  I  N  I  I  Y  I  I  V  E  E  N  L  I  Q  F  S  S  *  F  Y  I  L </first_frame>
            <second_frame>  G  I  F  *  Q  H  W  L  G  C  L  I  K  A  A  *  I  L  R  H  V  H  T  Y  S  R  K  C  *  S  Q  V  H  F  R  E  A  K  S  *  I  Y  Q  E  R  H  K  M  :  V  C  R  R  W  S  S  S  *  G  P  I  L  E  R  C  *  S  L  S  *  R  L  C  *  G  T  Q  K  E  Q  I  D  S  I  S  N  I  L  I  G  M  W  M  A  W  I  A  N  E  I  E  N  I  G  L  *  L  T  G  L  I  S  S  I  S  L  L  K  K  I  *  S  N  F  H  H  S  F  I  F   </second_frame>
            <third_frame>   G  S  F  N  S  T  G  L  V  V  S  S  K  L  P  R  F  S  D  M  Y  T  L  T  V  E  S  A  D  P  K  S  I  S  A  R  P  K  V  E  F  T  K  S  V  T  K  W :   F  A  E  D  G  V  L  V  E  G  L  F  W  K  D  V  E  A  L  V  N  D  Y  A  K  E  H  K  K  S  K  *  I  Q  F  Q  T  F  *  *  E  C  G  W  H  G  *  P  M  R  L  K  T  S  V  Y  D  L  L  D  *  Y  H  L  Y  H  C  *  R  K  F  N  P  I  F  I  I  V  L  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0066O12.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45535" stop="45393"/>
                    <exon start="45287" stop="45191"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSFNSTGLVVSSKLPRFSDMYTLTVESADPKSISARPKVEFTKSVTKWFAEDGVLVEGLFWKDVEALVNDYAKEHKKSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 163 chains have been computed
$ 
$ memory statistics:
$ 152696 bytes spliced alignments in total
$ 57 spliced alignments have been stored
$ 2678 bytes was the average size of a spliced alignment
$ 13456 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2242 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 226 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 17:23:40
-->
