<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 17:17:51"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568962" ref_strand="+" ref_description="SGN-E568962 [13327]">
      <seq>gctgatcttacctcttatagcaagtcggagtatccactttctcattatgcaaaaatgtttggactgcaagctgcagtagctatacgtctgcgtagtatctcaactggttcatctgatttcgttttggagttctttctaccctcagactgcagaaatcctgaagatcatagaaaaatgcttacttcattatccatcatcatacaaaatgtttgccggacattgagggttgtgacagacaaagagttgcaggaagaaactgtttctatgggcgaagtggcaaaccacacagttgaaccacatacggagcacactgaaacttctcaagagaggacatcgtggacctcttgtgatgcagagttccaggagagttctgttatgtctacattccaggatgaaaaaccagatgaaatgctaaggaaagattcggtggagtttaggcaccgtaagaattctgcttatgaggagggtgtctctcgtaatctgggtaaaacgggagacaggagacgtgcgaaggctgagaagactattaccttgcaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="+" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="10081" stop="11221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10381" g_stop="10921" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="+" ref_id="SGN-E568962" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10381" e_stop="10921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATCTAACCTCTTATAGCAAGTCAGAGTATCCACTTTCTCATTATGCAAAAATGTTTGGACTGCAAGCTGCAGTAGCTATACGTCTACGTAGTATCTCAACTGGTTCATCTGATTTTGTTTTGGAGTTCTTTCTACCCTCAGACTGCAGAAATCCTGAAGACCATAGAAAAATGCTTACTTCATTATCCATCATCATACAAAATGTTTGCCGGACATTGAGGGTTGTGACAGATAAAGAGTTGCAGGAAGAAACTATATCTGTGGGAGAAATGGCAAACCACACAGTTGAACAACATAAGGAGCACACTGAAACCTCTCAAGAAAGGACATCGTGGACCTCTTGTGACGCAGAGTTCCAGGAGAGTTCTGTTATGTCTACATTCCAGGATGAAAAACCAGATGAAATGCTAAGGAAAGATTCGGTGGAGTTTAGGCACCGTAAGAATTCTGCTTATGAGGAGGGTGTCTCTCGTAATCTGGGTAAAACGGGAGACAGGAGACGTGCGAAGGCTGAGAAGACTATTACCTTGCAAGTTC</genome_strand>
        <mrna_strand>GCTGATCTTACCTCTTATAGCAAGTCGGAGTATCCACTTTCTCATTATGCAAAAATGTTTGGACTGCAAGCTGCAGTAGCTATACGTCTGCGTAGTATCTCAACTGGTTCATCTGATTTCGTTTTGGAGTTCTTTCTACCCTCAGACTGCAGAAATCCTGAAGATCATAGAAAAATGCTTACTTCATTATCCATCATCATACAAAATGTTTGCCGGACATTGAGGGTTGTGACAGACAAAGAGTTGCAGGAAGAAACTGTTTCTATGGGCGAAGTGGCAAACCACACAGTTGAACCACATACGGAGCACACTGAAACTTCTCAAGAGAGGACATCGTGGACCTCTTGTGATGCAGAGTTCCAGGAGAGTTCTGTTATGTCTACATTCCAGGATGAAAAACCAGATGAAATGCTAAGGAAAGATTCGGTGGAGTTTAGGCACCGTAAGAATTCTGCTTATGAGGAGGGTGTCTCTCGTAATCTGGGTAAAACGGGAGACAGGAGACGTGCGAAGGCTGAGAAGACTATTACCTTGCAAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327624" ref_strand="+" ref_description="SGN-E327624 [cTOC-20-L17]">
      <seq>tatagcaagtcagagtatccactttctcattatgcaaaaatgtttggactgcaagctgcagtagctatacgtctacgtagtatctcaactggttcatctgattttgttttggagttctttctaccctcagactgcagaaatcctgaagaccatagaaaaatgcttacttcattatccatcatcatacaaaatgtttgccggacattgagggttgtgacagataaagagttgcaggaagaaactatatctgtgggagaaatggcaaaccacacagttgaacaacataaggagcacactgaaacctctcaagaaaggacatcgtggacctcttgtgacgcagagttccaggagagttctgttatgtctacattccaggatgaaaaaccagatgaaatgctaaggaaagattcggtggagtttaggcaccgtaagaattctgcttatgaggagggtgtctctcgtaatctgggtaaaacgggagacaggagacgtgcgaaggctgagaagactattaccttgcaagttcttcagcagtattttgctggtagcctannagatgctgcaaagagcattggtgtttgtcctaccactctgaagaggatatgcangcagcacggaattaaacgctggccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="+" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="10096" stop="11783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10396" g_stop="10972" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="11424" i_length="452">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11425" g_stop="11483" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="636" r_length="59" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="+" ref_id="SGN-E327624" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10396" e_stop="10972"/>
          <exon e_start="11425" e_stop="11483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGCAAGTCAGAGTATCCACTTTCTCATTATGCAAAAATGTTTGGACTGCAAGCTGCAGTAGCTATACGTCTACGTAGTATCTCAACTGGTTCATCTGATTTTGTTTTGGAGTTCTTTCTACCCTCAGACTGCAGAAATCCTGAAGACCATAGAAAAATGCTTACTTCATTATCCATCATCATACAAAATGTTTGCCGGACATTGAGGGTTGTGACAGATAAAGAGTTGCAGGAAGAAACTATATCTGTGGGAGAAATGGCAAACCACACAGTTGAACAACATAAGGAGCACACTGAAACCTCTCAAGAAAGGACATCGTGGACCTCTTGTGACGCAGAGTTCCAGGAGAGTTCTGTTATGTCTACATTCCAGGATGAAAAACCAGATGAAATGCTAAGGAAAGATTCGGTGGAGTTTAGGCACCGTAAGAATTCTGCTTATGAGGAGGGTGTCTCTCGTAATCTGGGTAAAACGGGAGACAGGAGACGTGCGAAGGCTGAGAAGACTATTACCTTGCAAGTTCTTCAGCAGTATTTTGCTGGTAGCCTAAAAGATGCTGCAAAGAGCATTGGTGGTAAGTAAATACTCCTTCCATTTTAATTTGTTTTAGCCTTGGTCTTACTTTTCTTTTTTGTCCGTTTCAAAAAGAATGTTTCTTTCCTTTTTCAACCACTCATTAATTTCAACTTTCCAAATGACATGTTTAAGACCACGAGATTAAAAAGAATATTTTGGTACATTCCATCTTCAGTTTAAGACCACAAGATTTTAAAAAAAATACTTTGTTGAACTTTGTTCCTAGTCAAAACTTGGACATACATATTAAAACAGAGGGAGTTATTTTCATGGATAAGATCCAAAATTTCACTCTGTGCACTTATAACTTACTTTCTCATGTATTTTTTATTTTTTACGCTGATCATATTGGTCGCTTTACTTTCTTGGACTCTTTACGTATGAGGATTTTAACTTTGTTTTTTGCTGTTTCTTCCTTCCCCTCCTTACCTATGCTCTCTTGAAATACAGTTTGTCCTACCACTCTGAAGAGGATATGCAGGCAGCACGGAATTAAACGCTGGCCTTCT</genome_strand>
        <mrna_strand>TATAGCAAGTCAGAGTATCCACTTTCTCATTATGCAAAAATGTTTGGACTGCAAGCTGCAGTAGCTATACGTCTACGTAGTATCTCAACTGGTTCATCTGATTTTGTTTTGGAGTTCTTTCTACCCTCAGACTGCAGAAATCCTGAAGACCATAGAAAAATGCTTACTTCATTATCCATCATCATACAAAATGTTTGCCGGACATTGAGGGTTGTGACAGATAAAGAGTTGCAGGAAGAAACTATATCTGTGGGAGAAATGGCAAACCACACAGTTGAACAACATAAGGAGCACACTGAAACCTCTCAAGAAAGGACATCGTGGACCTCTTGTGACGCAGAGTTCCAGGAGAGTTCTGTTATGTCTACATTCCAGGATGAAAAACCAGATGAAATGCTAAGGAAAGATTCGGTGGAGTTTAGGCACCGTAAGAATTCTGCTTATGAGGAGGGTGTCTCTCGTAATCTGGGTAAAACGGGAGACAGGAGACGTGCGAAGGCTGAGAAGACTATTACCTTGCAAGTTCTTCAGCAGTATTTTGCTGGTAGCCTANNAGATGCTGCAAAGAGCATTGGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCCTACCACTCTGAAGAGGATATGCANGCAGCACGGAATTAAACGCTGGCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212499" ref_strand="+" ref_description="SGN-E212499 [cLEC-74-M3]">
      <seq>ttttgttttggagttctttctaccctcagactgcagaaatcctgaagaccatagaaaaatgcttacttcattatccatcatcatacaaaatgtttgccggacattgagggttgtgacagataaagagttgcaggaagaaactatatctgtgggagaaatggcaaaccacacagttgaacaacataaggagcacactgaaacctctcaagaaaggacatcgtggacctcttgtgacgcagagttccaggagagttctgttatgtctacattccaggatgaaaaaccagatgaaatgctaaggaaagattcggtggagtttaggcaccgtaagaattctgcttatgaggagggtgtctctcgtaatctgggtaaaacgggagacaggagacgtgcgaaggctgagaagactattaccttgcaagttcttcagcagtattttgctggtagcctaaaagatgctgcaaagagcattggtgtttgtcctaccactctgaagaggatatgcaggcagcacggaattaaacgctggccttctcgaaagatcaagaangttggtcactccttacnaaaaatccaacgtgttattgattcagttcagggtgcctctggcactttancaattgatccttctattcaaacttcccagagtggcgtctccgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="+" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="10197" stop="11914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10497" g_stop="10972" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="11424" i_length="452">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11425" g_stop="11614" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="664" r_length="188" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="+" ref_id="SGN-E212499" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10497" e_stop="10972"/>
          <exon e_start="11425" e_stop="11614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTTTGGAGTTCTTTCTACCCTCAGACTGCAGAAATCCTGAAGACCATAGAAAAATGCTTACTTCATTATCCATCATCATACAAAATGTTTGCCGGACATTGAGGGTTGTGACAGATAAAGAGTTGCAGGAAGAAACTATATCTGTGGGAGAAATGGCAAACCACACAGTTGAACAACATAAGGAGCACACTGAAACCTCTCAAGAAAGGACATCGTGGACCTCTTGTGACGCAGAGTTCCAGGAGAGTTCTGTTATGTCTACATTCCAGGATGAAAAACCAGATGAAATGCTAAGGAAAGATTCGGTGGAGTTTAGGCACCGTAAGAATTCTGCTTATGAGGAGGGTGTCTCTCGTAATCTGGGTAAAACGGGAGACAGGAGACGTGCGAAGGCTGAGAAGACTATTACCTTGCAAGTTCTTCAGCAGTATTTTGCTGGTAGCCTAAAAGATGCTGCAAAGAGCATTGGTGGTAAGTAAATACTCCTTCCATTTTAATTTGTTTTAGCCTTGGTCTTACTTTTCTTTTTTGTCCGTTTCAAAAAGAATGTTTCTTTCCTTTTTCAACCACTCATTAATTTCAACTTTCCAAATGACATGTTTAAGACCACGAGATTAAAAAGAATATTTTGGTACATTCCATCTTCAGTTTAAGACCACAAGATTTTAAAAAAAATACTTTGTTGAACTTTGTTCCTAGTCAAAACTTGGACATACATATTAAAACAGAGGGAGTTATTTTCATGGATAAGATCCAAAATTTCACTCTGTGCACTTATAACTTACTTTCTCATGTATTTTTTATTTTTTACGCTGATCATATTGGTCGCTTTACTTTCTTGGACTCTTTACGTATGAGGATTTTAACTTTGTTTTTTGCTGTTTCTTCCTTCCCCTCCTTACCTATGCTCTCTTGAAATACAGTTTGTCCTACCACTCTGAAGAGGATATGCAGGCAGCACGGAATTAAACGCTGGCCTTCTCGAAAGATCAAGAAGGTTGGTCACTCCTTACAAAAAATCCAACGTGTTATTGATTCAGTTCAGGGTGCCTCTGGCACTTTACAAATTGAATCCTTCTATTCAAACTTCCCAGAGTTGGCGTCTCCGAATGC</genome_strand>
        <mrna_strand>TTTTGTTTTGGAGTTCTTTCTACCCTCAGACTGCAGAAATCCTGAAGACCATAGAAAAATGCTTACTTCATTATCCATCATCATACAAAATGTTTGCCGGACATTGAGGGTTGTGACAGATAAAGAGTTGCAGGAAGAAACTATATCTGTGGGAGAAATGGCAAACCACACAGTTGAACAACATAAGGAGCACACTGAAACCTCTCAAGAAAGGACATCGTGGACCTCTTGTGACGCAGAGTTCCAGGAGAGTTCTGTTATGTCTACATTCCAGGATGAAAAACCAGATGAAATGCTAAGGAAAGATTCGGTGGAGTTTAGGCACCGTAAGAATTCTGCTTATGAGGAGGGTGTCTCTCGTAATCTGGGTAAAACGGGAGACAGGAGACGTGCGAAGGCTGAGAAGACTATTACCTTGCAAGTTCTTCAGCAGTATTTTGCTGGTAGCCTAAAAGATGCTGCAAAGAGCATTGGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCCTACCACTCTGAAGAGGATATGCAGGCAGCACGGAATTAAACGCTGGCCTTCTCGAAAGATCAAGAANGTTGGTCACTCCTTACNAAAAATCCAACGTGTTATTGATTCAGTTCAGGGTGCCTCTGGCACTTTANCAATTG-ATCCTTCTATTCAAACTTCCCAGAG-TGGCGTCTCCGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379935" ref_strand="+" ref_description="SGN-E379935 [TUS-3-F16]">
      <seq>gtaatctgggtaaaacgggagacaggagacgtgcgaaggctgagaagactattaccttgcaagttcttcagcagtattttgctggtagcctaaaagatgctgcaaagagcattggtgtttgtcctaccactctgaagaggatatgcaggcagcacggaattaaacgctggccttctcgaaagatcaagaaggttggtcactccttacaaaaaatccaacgtgttattgattcagttcagggtgcctctggcactttacaaattgaatccttctattcaaacttcccagagttggcgtctccgaatgcatcaagaatgagcccttttgcagactcaaagtcaaatgaacatccaacagccttgaacacacaacaagagagatgcattacgagccccaatcctgatgcatctaagtcaccctcttcttccagcagtcgaagttcaagttcaagtcaatgttgttcatccgggacaaaacctcaatcgcctcaatctcaccctttgagtattgttggcgatgaagatctaatcgtacaggaagagtctgtagataatgcagtgaaaagggttaaaagtgaaccagagcttcatttatcaagtgaagcactgaagactataccaagatctcaaagccatttatgtgttgctgagaatcctatatcagaaaaccttgtattgaagaggagtccatcaacattctcagaagaagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="+" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="10556" stop="12318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10856" g_stop="10972" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="11424" i_length="452">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11425" g_stop="12018" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="711" r_length="594" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="+" ref_id="SGN-E379935" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10856" e_stop="10972"/>
          <exon e_start="11425" e_stop="12018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATCTGGGTAAAACGGGAGACAGGAGACGTGCGAAGGCTGAGAAGACTATTACCTTGCAAGTTCTTCAGCAGTATTTTGCTGGTAGCCTAAAAGATGCTGCAAAGAGCATTGGTGGTAAGTAAATACTCCTTCCATTTTAATTTGTTTTAGCCTTGGTCTTACTTTTCTTTTTTGTCCGTTTCAAAAAGAATGTTTCTTTCCTTTTTCAACCACTCATTAATTTCAACTTTCCAAATGACATGTTTAAGACCACGAGATTAAAAAGAATATTTTGGTACATTCCATCTTCAGTTTAAGACCACAAGATTTTAAAAAAAATACTTTGTTGAACTTTGTTCCTAGTCAAAACTTGGACATACATATTAAAACAGAGGGAGTTATTTTCATGGATAAGATCCAAAATTTCACTCTGTGCACTTATAACTTACTTTCTCATGTATTTTTTATTTTTTACGCTGATCATATTGGTCGCTTTACTTTCTTGGACTCTTTACGTATGAGGATTTTAACTTTGTTTTTTGCTGTTTCTTCCTTCCCCTCCTTACCTATGCTCTCTTGAAATACAGTTTGTCCTACCACTCTGAAGAGGATATGCAGGCAGCACGGAATTAAACGCTGGCCTTCTCGAAAGATCAAGAAGGTTGGTCACTCCTTACAAAAAATCCAACGTGTTATTGATTCAGTTCAGGGTGCCTCTGGCACTTTACAAATTGAATCCTTCTATTCAAACTTCCCAGAGTTGGCGTCTCCGAATGCATCAAGAATGAGCCCTTTTGCAGACTCAAAGTCAAATGAACATCCAACAGCCTTGAACACACAACAAGAGAGATGCATTACGAGCCCCAATCCTGATGCATCTAAGTCACCCTCTTCTTCCAGCAGTCGAAGTTCAAGTTCAAGTCAATGTTGTTCATCCGGGACAAAACCTCAATCGCCTCAATCTCACCCTTTGAGTATTGTTGGCGATGAAGATCTAATCGTACAGGAAGAGTCTGTAGATAATGCAGTGAAAAGGGTTAAAAGTGAACCAGAGCTTCATTTATCAAGTGAAGCACTGAAGACTATACCAAGATCTCAAAGCCATTTATGTGTTGCTGAGAATCCTATATCAGAAAACCTTGTATTGAAGAGGAGTCCATCAACATCTCAAGAAGAAGCTC</genome_strand>
        <mrna_strand>GTAATCTGGGTAAAACGGGAGACAGGAGACGTGCGAAGGCTGAGAAGACTATTACCTTGCAAGTTCTTCAGCAGTATTTTGCTGGTAGCCTAAAAGATGCTGCAAAGAGCATTGGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCCTACCACTCTGAAGAGGATATGCAGGCAGCACGGAATTAAACGCTGGCCTTCTCGAAAGATCAAGAAGGTTGGTCACTCCTTACAAAAAATCCAACGTGTTATTGATTCAGTTCAGGGTGCCTCTGGCACTTTACAAATTGAATCCTTCTATTCAAACTTCCCAGAGTTGGCGTCTCCGAATGCATCAAGAATGAGCCCTTTTGCAGACTCAAAGTCAAATGAACATCCAACAGCCTTGAACACACAACAAGAGAGATGCATTACGAGCCCCAATCCTGATGCATCTAAGTCACCCTCTTCTTCCAGCAGTCGAAGTTCAAGTTCAAGTCAATGTTGTTCATCCGGGACAAAACCTCAATCGCCTCAATCTCACCCTTTGAGTATTGTTGGCGATGAAGATCTAATCGTACAGGAAGAGTCTGTAGATAATGCAGTGAAAAGGGTTAAAAGTGAACCAGAGCTTCATTTATCAAGTGAAGCACTGAAGACTATACCAAGATCTCAAAGCCATTTATGTGTTGCTGAGAATCCTATATCAGAAAACCTTGTATTGAAGAGGAGTCCATCAACATTCTCAGAAGAAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208904" ref_strand="+" ref_description="SGN-E208904 [cLEC-51-D14]">
      <seq>gtaatctgggtaaaacgggagacaggagacgtgcgaaggctgagaagactattaccttgcaagttcttcagcagtattttgctggtagcctaaaagatgctgcaaagagcattggtgtttgtcctaccactctgaagaggatatgcaggcagcacggaattaaacgctggccttctcgaaagatcaagaaggttggtcactccttacaaaaaatccaacgtgttattgattcagttcagggtgcctctggcactttacaaattgaatccttctattcaaacttcccagagttggcgtctccgaatgcatcaagaatgagcccttttgcagactcaaagtcaaatgaacatccaacagccttgaacacacaacaagagagatgcattacgagccccaatcctgatgcatctaagtcaccctcttcttccagcagtcgaagttcaagttcaagtcaatgttgttcatccgggacaaaacctcaatcgcctcaatctcaccctttgagtattgttggcgatgaagatctaatcgtacaggaagagtctgtagataatgcagtgaaaagggttaaaagtgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="+" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="10556" stop="12187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10856" g_stop="10972" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10973" i_stop="11424" i_length="452">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11425" g_stop="11887" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="580" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="+" ref_id="SGN-E208904" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10856" e_stop="10972"/>
          <exon e_start="11425" e_stop="11887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATCTGGGTAAAACGGGAGACAGGAGACGTGCGAAGGCTGAGAAGACTATTACCTTGCAAGTTCTTCAGCAGTATTTTGCTGGTAGCCTAAAAGATGCTGCAAAGAGCATTGGTGGTAAGTAAATACTCCTTCCATTTTAATTTGTTTTAGCCTTGGTCTTACTTTTCTTTTTTGTCCGTTTCAAAAAGAATGTTTCTTTCCTTTTTCAACCACTCATTAATTTCAACTTTCCAAATGACATGTTTAAGACCACGAGATTAAAAAGAATATTTTGGTACATTCCATCTTCAGTTTAAGACCACAAGATTTTAAAAAAAATACTTTGTTGAACTTTGTTCCTAGTCAAAACTTGGACATACATATTAAAACAGAGGGAGTTATTTTCATGGATAAGATCCAAAATTTCACTCTGTGCACTTATAACTTACTTTCTCATGTATTTTTTATTTTTTACGCTGATCATATTGGTCGCTTTACTTTCTTGGACTCTTTACGTATGAGGATTTTAACTTTGTTTTTTGCTGTTTCTTCCTTCCCCTCCTTACCTATGCTCTCTTGAAATACAGTTTGTCCTACCACTCTGAAGAGGATATGCAGGCAGCACGGAATTAAACGCTGGCCTTCTCGAAAGATCAAGAAGGTTGGTCACTCCTTACAAAAAATCCAACGTGTTATTGATTCAGTTCAGGGTGCCTCTGGCACTTTACAAATTGAATCCTTCTATTCAAACTTCCCAGAGTTGGCGTCTCCGAATGCATCAAGAATGAGCCCTTTTGCAGACTCAAAGTCAAATGAACATCCAACAGCCTTGAACACACAACAAGAGAGATGCATTACGAGCCCCAATCCTGATGCATCTAAGTCACCCTCTTCTTCCAGCAGTCGAAGTTCAAGTTCAAGTCAATGTTGTTCATCCGGGACAAAACCTCAATCGCCTCAATCTCACCCTTTGAGTATTGTTGGCGATGAAGATCTAATCGTACAGGAAGAGTCTGTAGATAATGCAGTGAAAAGGGTTAAAAGTGAACC</genome_strand>
        <mrna_strand>GTAATCTGGGTAAAACGGGAGACAGGAGACGTGCGAAGGCTGAGAAGACTATTACCTTGCAAGTTCTTCAGCAGTATTTTGCTGGTAGCCTAAAAGATGCTGCAAAGAGCATTGGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCCTACCACTCTGAAGAGGATATGCAGGCAGCACGGAATTAAACGCTGGCCTTCTCGAAAGATCAAGAAGGTTGGTCACTCCTTACAAAAAATCCAACGTGTTATTGATTCAGTTCAGGGTGCCTCTGGCACTTTACAAATTGAATCCTTCTATTCAAACTTCCCAGAGTTGGCGTCTCCGAATGCATCAAGAATGAGCCCTTTTGCAGACTCAAAGTCAAATGAACATCCAACAGCCTTGAACACACAACAAGAGAGATGCATTACGAGCCCCAATCCTGATGCATCTAAGTCACCCTCTTCTTCCAGCAGTCGAAGTTCAAGTTCAAGTCAATGTTGTTCATCCGGGACAAAACCTCAATCGCCTCAATCTCACCCTTTGAGTATTGTTGGCGATGAAGATCTAATCGTACAGGAAGAGTCTGTAGATAATGCAGTGAAAAGGGTTAAAAGTGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403473" ref_strand="+" ref_description="SGN-E403473 [PPC-10-P21]">
      <seq>ttcaagttcaagtcaatgttgttcatctgggacaaagcctaaatcgcctcaatctcacccttcgaatattgttggcgatgaagatctaattgtacaggaaaagtctgtagataatgcagtgaaaaggattaaaagtgaaccagagcttcatttatcaagtgaagcactgaagaccataccaagatctcaaagccatgcatgtgttgctgagaatcctaaatcagaaaaccctctagtgaagaggagtccatcaacatctcaagaagaagctccacgagtaaaagtaacacatggagaagaaaagattaggttccgaatgctaaacagttggagatacaatgatcttctgagagaaattacaaggcggtttggcatagatgatcctagtggacttcaactcaagtacttggatgacgactccgagtgggttctattaacatgcgatgcagacttggaagaatgcatcgatgtttgtatgtcttcttcccaaatccaaatgatcaagctcatcttagttcaagattcacagcatcattatggaagctcttttggtagcagcagtcctatactagtacagtagacaactggtataccccctagttgcaagtagttaccaaaatgaatatagtttccttttaggattagatttggtatgagacttgaagaaatgttgcttgcttaattgtaattcattctgtttgagtcttcatgtaagtcaatccttttgactgctatgaactagtattgagccgtaaggctattattgnnttcatctcaaactcattataattcaaatttttataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="+" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="11447" stop="12825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11747" g_stop="12499" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="801" polyA_stop="811"/>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="+" ref_id="SGN-E403473" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11747" e_stop="12499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGTTCAAGTCAATGTTGTTCATCCGGGACAAAACCTCAATCGCCTCAATCTCACCCTTTGAGTATTGTTGGCGATGAAGATCTAATCGTACAGGAAGAGTCTGTAGATAATGCAGTGAAAAGGGTTAAAAGTGAACCAGAGCTTCATTTATCAAGTGAAGCACTGAAGACTATACCAAGATCTCAAAGCCATTTATGTGTTGCTGAGAATCCTATATCAGAAAACCTTGTATTGAAGAGGAGTCCATCAACATCTCAAGAAGAAGCTCCACGAGTAAAAGTAACACATGGAGAAGAAAAGATTAGGTTCCGAATGCAAAACAGTTGGAGATACAATGATCTTCTAAGAGAAATTACAAGGCGGTTTGGCATAGATGATCCTAGTGGACTTCAACTCAAGTACTTGGACGATGACTCCGAGTGGGTTCTATTAACATGCGATGCAGACTTGGAAGAATGCATCGATGTTTGTATG---TCTTCCCAAATCCAAATGATCAAGCTCATCTTAGTTCAAGATTCACAGCATCATTTTGGAAGCTCTTTCGGTAGCAGCAGTCCTATATTAGTACAGTAACCAACTGGTATACCCCCTAG-T-----T-G---CCAAAATGGATATAGTTCCCTTTTAGGATTAGATTTGGTATGAGACTTGAAGAAATGTTGCTTGCTTAATTGTAAATTCATTCTGTTTGAGTCTTCATGTAAGTCAATCCTTTTGACTGATATGAACTAGTATTGAGCCGTAAGGCTATTATT</genome_strand>
        <mrna_strand>TTCAAGTTCAAGTCAATGTTGTTCATCTGGGACAAAGCCTAAATCGCCTCAATCTCACCCTTCGAATATTGTTGGCGATGAAGATCTAATTGTACAGGAAAAGTCTGTAGATAATGCAGTGAAAAGGATTAAAAGTGAACCAGAGCTTCATTTATCAAGTGAAGCACTGAAGACCATACCAAGATCTCAAAGCCATGCATGTGTTGCTGAGAATCCTAAATCAGAAAACCCTCTAGTGAAGAGGAGTCCATCAACATCTCAAGAAGAAGCTCCACGAGTAAAAGTAACACATGGAGAAGAAAAGATTAGGTTCCGAATGCTAAACAGTTGGAGATACAATGATCTTCTGAGAGAAATTACAAGGCGGTTTGGCATAGATGATCCTAGTGGACTTCAACTCAAGTACTTGGATGACGACTCCGAGTGGGTTCTATTAACATGCGATGCAGACTTGGAAGAATGCATCGATGTTTGTATGTCTTCTTCCCAAATCCAAATGATCAAGCTCATCTTAGTTCAAGATTCACAGCATCATTATGGAAGCTCTTTTGGTAGCAGCAGTCCTATACTAGTACAGTAGACAACTGGTATACCCCCTAGTTGCAAGTAGTTACCAAAATGAATATAGTTTCCTTTTAGGATTAGATTTGGTATGAGACTTGAAGAAATGTTGCTTGCTTAATTGT-AATTCATTCTGTTTGAGTCTTCATGTAAGTCAATCCTTTTGACTGCTATGAACTAGTATTGAGCCGTAAGGCTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433499" ref_strand="+" ref_description="SGN-E433499 [STM-58-H5]">
      <seq>ttcaagttcaagtcaatgttgttcatctgggacaaagcctaaatcgcctcaatctcacccttcgaatattgttggcgatgaagatctaattgtacaggaaaagtctgtagataatgcagtgaaaaggattaaaagtgaaccagagcttcatttatcaagtgaagcactgaagaccataccaagatctcaaagccatgcatgtgttgctgagaatcctaaatcagaaaaccctctagtgaagaggagtccatcaacatctcaagaagaagctccacgagtaaaagtaacacatggagaagaaaagattaggttccgaatgctaaacagttggagatacaatgatcttctgagagaaattacaaggcggtttggcatagatgatcctagtggacttcaactcaagtacttggatgacgactccgagtgggttctattaacatgcgatgcagacttggaagaatgcatcgatgtttgtatgtcttcttcccaaatccaaatgatcaagctcatcttagttcaagattcacagcatcattatggaagctcttttggtagcagcagtcctatactagtacagtagacaactggtataccccctagttgccagtagttaccaaaatgaatatagtttccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="+" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="11447" stop="12649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11747" g_stop="12349" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="+" ref_id="SGN-E433499" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11747" e_stop="12349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGTTCAAGTCAATGTTGTTCATCCGGGACAAAACCTCAATCGCCTCAATCTCACCCTTTGAGTATTGTTGGCGATGAAGATCTAATCGTACAGGAAGAGTCTGTAGATAATGCAGTGAAAAGGGTTAAAAGTGAACCAGAGCTTCATTTATCAAGTGAAGCACTGAAGACTATACCAAGATCTCAAAGCCATTTATGTGTTGCTGAGAATCCTATATCAGAAAACCTTGTATTGAAGAGGAGTCCATCAACATCTCAAGAAGAAGCTCCACGAGTAAAAGTAACACATGGAGAAGAAAAGATTAGGTTCCGAATGCAAAACAGTTGGAGATACAATGATCTTCTAAGAGAAATTACAAGGCGGTTTGGCATAGATGATCCTAGTGGACTTCAACTCAAGTACTTGGACGATGACTCCGAGTGGGTTCTATTAACATGCGATGCAGACTTGGAAGAATGCATCGATGTTTGTATG---TCTTCCCAAATCCAAATGATCAAGCTCATCTTAGTTCAAGATTCACAGCATCATTTTGGAAGCTCTTTCGGTAGCAGCAGTCCTATATTAGTACAGTAACCAACTGGTATACCCCCTAGTTGCCA</genome_strand>
        <mrna_strand>TTCAAGTTCAAGTCAATGTTGTTCATCTGGGACAAAGCCTAAATCGCCTCAATCTCACCCTTCGAATATTGTTGGCGATGAAGATCTAATTGTACAGGAAAAGTCTGTAGATAATGCAGTGAAAAGGATTAAAAGTGAACCAGAGCTTCATTTATCAAGTGAAGCACTGAAGACCATACCAAGATCTCAAAGCCATGCATGTGTTGCTGAGAATCCTAAATCAGAAAACCCTCTAGTGAAGAGGAGTCCATCAACATCTCAAGAAGAAGCTCCACGAGTAAAAGTAACACATGGAGAAGAAAAGATTAGGTTCCGAATGCTAAACAGTTGGAGATACAATGATCTTCTGAGAGAAATTACAAGGCGGTTTGGCATAGATGATCCTAGTGGACTTCAACTCAAGTACTTGGATGACGACTCCGAGTGGGTTCTATTAACATGCGATGCAGACTTGGAAGAATGCATCGATGTTTGTATGTCTTCTTCCCAAATCCAAATGATCAAGCTCATCTTAGTTCAAGATTCACAGCATCATTATGGAAGCTCTTTTGGTAGCAGCAGTCCTATACTAGTACAGTAGACAACTGGTATACCCCCTAGTTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378874" ref_strand="+" ref_description="SGN-E378874 [TUS-3-F16](-)">
      <seq>atgttgttcatccgggacaaaacctcaatcgcctcaatctcaccctttgagtattgttggcgatgaagatctaatcgtacaggaagagtctgtagataatgcagtgaaaagggttaaaagtgaaccagagcttcatttatcaagtgaagcactgaagactataccaagatctcaaagccatttatgtgttgctgagaatcctatatcagaaaaccttgtattgaagaggagtccatcaacatctcaagaagaagctccacgagtaaaagtaacacatggagaagaaaagattaggttccgaatgcaaaacagttggagatacaatgatcttctaagagaaattacaaggcggtttggcatagatgatcctagtggacttcaactcaagtacttggacgatgactccgagtgggttctattaacatgcgatgcagacttggaagaatgcatcgatgtttgtatgtcttcccaaatccaaatgatcaagctcatcttagttcaagattcacagcatcattttggaagctctttcggtagcagcagtcctatattagtacagtaaccaactggtataccccctagttgccaaaatggatatagttcccttttaggattagatttggtatgagacttgaagaaatgttgcttgcttaattgtaaattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="+" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="11462" stop="12727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11762" g_stop="12427" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="+" ref_id="SGN-E378874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11762" e_stop="12427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTGTTCATCCGGGACAAAACCTCAATCGCCTCAATCTCACCCTTTGAGTATTGTTGGCGATGAAGATCTAATCGTACAGGAAGAGTCTGTAGATAATGCAGTGAAAAGGGTTAAAAGTGAACCAGAGCTTCATTTATCAAGTGAAGCACTGAAGACTATACCAAGATCTCAAAGCCATTTATGTGTTGCTGAGAATCCTATATCAGAAAACCTTGTATTGAAGAGGAGTCCATCAACATCTCAAGAAGAAGCTCCACGAGTAAAAGTAACACATGGAGAAGAAAAGATTAGGTTCCGAATGCAAAACAGTTGGAGATACAATGATCTTCTAAGAGAAATTACAAGGCGGTTTGGCATAGATGATCCTAGTGGACTTCAACTCAAGTACTTGGACGATGACTCCGAGTGGGTTCTATTAACATGCGATGCAGACTTGGAAGAATGCATCGATGTTTGTATGTCTTCCCAAATCCAAATGATCAAGCTCATCTTAGTTCAAGATTCACAGCATCATTTTGGAAGCTCTTTCGGTAGCAGCAGTCCTATATTAGTACAGTAACCAACTGGTATACCCCCTAGTTGCCAAAATGGATATAGTTCCCTTTTAGGATTAGATTTGGTATGAGACTTGAAGAAATGTTGCTTGCTTAATTGTAAATTCAT</genome_strand>
        <mrna_strand>ATGTTGTTCATCCGGGACAAAACCTCAATCGCCTCAATCTCACCCTTTGAGTATTGTTGGCGATGAAGATCTAATCGTACAGGAAGAGTCTGTAGATAATGCAGTGAAAAGGGTTAAAAGTGAACCAGAGCTTCATTTATCAAGTGAAGCACTGAAGACTATACCAAGATCTCAAAGCCATTTATGTGTTGCTGAGAATCCTATATCAGAAAACCTTGTATTGAAGAGGAGTCCATCAACATCTCAAGAAGAAGCTCCACGAGTAAAAGTAACACATGGAGAAGAAAAGATTAGGTTCCGAATGCAAAACAGTTGGAGATACAATGATCTTCTAAGAGAAATTACAAGGCGGTTTGGCATAGATGATCCTAGTGGACTTCAACTCAAGTACTTGGACGATGACTCCGAGTGGGTTCTATTAACATGCGATGCAGACTTGGAAGAATGCATCGATGTTTGTATGTCTTCCCAAATCCAAATGATCAAGCTCATCTTAGTTCAAGATTCACAGCATCATTTTGGAAGCTCTTTCGGTAGCAGCAGTCCTATATTAGTACAGTAACCAACTGGTATACCCCCTAGTTGCCAAAATGGATATAGTTCCCTTTTAGGATTAGATTTGGTATGAGACTTGAAGAAATGTTGCTTGCTTAATTGTAAATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E433500" ref_strand="+" ref_description="SGN-E433500 [STM-58-H5]">
      <seq>aaaatcctaatttataaaatttgaattatattgatctttgagatgaaacaataatagccttacggctcaatactagttcatagcagtcaaaaggattgacttacatgaagactcaaacagaatgaatttacaattaagcaagcaacatttcttcaagtctcataccaaatctaatcctaaaaggaaactatattcattttggtaactacttgcaactagggggtataccagttgtctactgtactagtataggactgctgctaccaaaagagcttccataatgatgctgtgaatcttgaactaagatgagcttgatcatttggatttgggaagaagacatacaaacatcgatgcattcttccaagtctgcatcgcatgttaatagaacccactcggagtcgtcatccaagtacttgagttgaagtccactaggatcatctatgccaaaccgccttgtaatttctctcagaagatcattgtatctccaactgtttagcattcggaacctaatcttttcttctccatgtgttacttttactcgtggagcttcttcttgagatgttgatggactcctcttcactagagggttttctgatttaggattctcagcaacacatgcatggctttgagatcttggtatggtcttcagtgcttcacttgataaatgaagctctggttcacttttaatccttttcactgcattatctacagacttttcctgtacaattagatcttcatcgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="12850" stop="11519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12506" g_stop="11819" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="743" r_length="701" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E433500" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12506" e_stop="11819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAACAATAATAGCCTTACGGCTCAATACTAGTTCATATCAGTCAAAAGGATTGACTTACATGAAGACTCAAACAGAATGAATTTACAATTAAGCAAGCAACATTTCTTCAAGTCTCATACCAAATCTAATCCTAAAAGGGAACTATATCCATTTT-G---------GCAACTAGGGGGTATACCAGTTGGTTACTGTACTAATATAGGACTGCTGCTACCGAAAGAGCTTCCAAAATGATGCTGTGAATCTTGAACTAAGATGAGCTTGATCATTTGGATTT-GG--GAAGACATACAAACATCGATGCATTCTTCCAAGTCTGCATCGCATGTTAATAGAACCCACTCGGAGTCATCGTCCAAGTACTTGAGTTGAAGTCCACTAGGATCATCTATGCCAAACCGCCTTGTAATTTCTCTTAGAAGATCATTGTATCTCCAACTGTTTTGCATTCGGAACCTAATCTTTTCTTCTCCATGTGTTACTTTTACTCGTGGAGCTTCTTCTTGAGATGTTGATGGACTCCTCTTCAATACAAGGTTTTCTGATATAGGATTCTCAGCAACACATAAATGGCTTTGAGATCTTGGTATAGTCTTCAGTGCTTCACTTGATAAATGAAGCTCTGGTTCACTTTTAACCCTTTTCACTGCATTATCTACAGACTCTTCCTGTACGATTAGATCTTCATCGCCA</genome_strand>
        <mrna_strand>ATGAAACAATAATAGCCTTACGGCTCAATACTAGTTCATAGCAGTCAAAAGGATTGACTTACATGAAGACTCAAACAGAATGAATTTACAATTAAGCAAGCAACATTTCTTCAAGTCTCATACCAAATCTAATCCTAAAAGGAAACTATATTCATTTTGGTAACTACTTGCAACTAGGGGGTATACCAGTTGTCTACTGTACTAGTATAGGACTGCTGCTACCAAAAGAGCTTCCATAATGATGCTGTGAATCTTGAACTAAGATGAGCTTGATCATTTGGATTTGGGAAGAAGACATACAAACATCGATGCATTCTTCCAAGTCTGCATCGCATGTTAATAGAACCCACTCGGAGTCGTCATCCAAGTACTTGAGTTGAAGTCCACTAGGATCATCTATGCCAAACCGCCTTGTAATTTCTCTCAGAAGATCATTGTATCTCCAACTGTTTAGCATTCGGAACCTAATCTTTTCTTCTCCATGTGTTACTTTTACTCGTGGAGCTTCTTCTTGAGATGTTGATGGACTCCTCTTCACTAGAGGGTTTTCTGATTTAGGATTCTCAGCAACACATGCATGGCTTTGAGATCTTGGTATGGTCTTCAGTGCTTCACTTGATAAATGAAGCTCTGGTTCACTTTTAATCCTTTTCACTGCATTATCTACAGACTTTTCCTGTACAATTAGATCTTCATCGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348757" ref_strand="+" ref_description="SGN-E348757 [cTOF-29-M23]">
      <seq>tcttctaagagaaattaaaggcggtttggcatagatgatcctagtggacttcaactcaagtaccttggacgatgactccgagtgggttctattaacatgcgatgcagacttggaagaatgcatcgatgtttgtatgtcttcccaaatccaaatgatcaagctcatcttagttcaagattcacagcatcattttggaagctctttcggtagcagcagtcctatattagtacagtaaccaactggtataccccctagttgccaaaatggatatagttcccttttaggattagatttggtatgagacttgaagaaatgttgcttgcttaattgtaaattcattctgtttgagtcttcatgtaagtcaatccttttgactgatatgaactagtattgagccgtaaggctattattgtttcatctagagtactcaaaactcattatagtttcaaaagtttaataatttgttgaaatttttagttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="+" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="11789" stop="12866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12089" g_stop="12562" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="480" polyA_stop="489"/>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="+" ref_id="SGN-E348757" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12089" e_stop="12562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTAAGAGAAATTACAAGGCGGTTTGGCATAGATGATCCTAGTGGACTTCAACTCAAGTA-CTTGGACGATGACTCCGAGTGGGTTCTATTAACATGCGATGCAGACTTGGAAGAATGCATCGATGTTTGTATGTCTTCCCAAATCCAAATGATCAAGCTCATCTTAGTTCAAGATTCACAGCATCATTTTGGAAGCTCTTTCGGTAGCAGCAGTCCTATATTAGTACAGTAACCAACTGGTATACCCCCTAGTTGCCAAAATGGATATAGTTCCCTTTTAGGATTAGATTTGGTATGAGACTTGAAGAAATGTTGCTTGCTTAATTGTAAATTCATTCTGTTTGAGTCTTCATGTAAGTCAATCCTTTTGACTGATATGAACTAGTATTGAGCCGTAAGGCTATTATTGTTTCATCTAGAGTACTCAAAACTCATTATAGTTTC-AAAGTTTAATAATTTGTTGAAATTTTA</genome_strand>
        <mrna_strand>TCTTCTAAGAGAAATTA-AAGGCGGTTTGGCATAGATGATCCTAGTGGACTTCAACTCAAGTACCTTGGACGATGACTCCGAGTGGGTTCTATTAACATGCGATGCAGACTTGGAAGAATGCATCGATGTTTGTATGTCTTCCCAAATCCAAATGATCAAGCTCATCTTAGTTCAAGATTCACAGCATCATTTTGGAAGCTCTTTCGGTAGCAGCAGTCCTATATTAGTACAGTAACCAACTGGTATACCCCCTAGTTGCCAAAATGGATATAGTTCCCTTTTAGGATTAGATTTGGTATGAGACTTGAAGAAATGTTGCTTGCTTAATTGTAAATTCATTCTGTTTGAGTCTTCATGTAAGTCAATCCTTTTGACTGATATGAACTAGTATTGAGCCGTAAGGCTATTATTGTTTCATCTAGAGTACTCAAAACTCATTATAGTTTCAAAAGTTTAATAATTTGTTGAAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349552" ref_strand="+" ref_description="SGN-E349552 [cTOS-1-O18]">
      <seq>ttctggatcttatgggagtaatggcaattctaaaaatccagctcaatgctgtatcagttgttaaccttgtgatggccgttggtattgctgttgaattctgtgtccatataacacatgccttcttggttagcagtggagatagaaaccaacgcatgaaggaggcactgactactatgggcgcttctgtattcagtggtatcacgcttacaaagcttgtcggtgtcattgttctttgtttctcaaggacagaagtttttgtggtttactactttcaaatgtacctggctttggttcttcttggttttctacatgggctcatatttttacctgtactattaagcatttttggtccgccatcaagatgtgtgcttgtagagaagcaagaggatcgtccatctacatcttcccaattctaatctaatcaggtgttaaaagagtctcctcggtaggaaatatattctttttgttcagaagccacgacttgatgtttgatccatgagataacaagcaggataattggtggtctacctacagcacaattctgatacaagctaatgcattaaaaagagctgtcctttgtagtgatacataatcttttctttttctctagattttgtgggtagtagagggagcccttgaatgttcatggctgcatgtataaccttctgaagacacatcagaatagttttgttaattgtaaattttatacattatatttctctgtaaaagaagaaggtatatatacatatcttttgtttctcagtcctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="15722" stop="12577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15524" g_stop="15511" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15510" i_stop="15422" i_length="89">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15421" g_stop="15311" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="125" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15310" i_stop="14835" i_length="476">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14834" g_stop="14767" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="193" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14766" i_stop="14003" i_length="764">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14002" g_stop="13936" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="260" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13935" i_stop="13857" i_length="79">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.405" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13856" g_stop="13788" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="329" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13787" i_stop="13319" i_length="469">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.627" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13318" g_stop="12878" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="768" r_length="439" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E349552" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15524" e_stop="15511"/>
          <exon e_start="15421" e_stop="15311"/>
          <exon e_start="14834" e_stop="14767"/>
          <exon e_start="14002" e_stop="13936"/>
          <exon e_start="13856" e_stop="13788"/>
          <exon e_start="13318" e_stop="12878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGATCTTATGGTATGTTTTCCTCTTTGAACAATTGTTTGAGTTCATATATTACACCTGATTTTCTCTCTCTAGCAGTGACATCTTACATCATTTTGCAGGGAGTAATGGCAATTCTAAAAATCCAGCTCAATGCTGTATCAGTTGTTAACCTTGTGATGGCCGTTGGTATTGCTGTTGAATTCTGTGTCCATATAACACATGCCTTCTTGGTTAGTCTTCTATCAGAGTGATCTATCTGGTCTACTTTTCTGTTTAAAATAATGAGAGAATGAAGATCAACTTGAGTAGGTTAAGTAAGAGAATACTGTATATTAAACAAATATAATTGTCTGCAAATAATTGAGAAGATAATCCTTGTCTGAGTGAGTAGAATGAATGACTAATAGGTTCAAGTAAATCTTTATGCCCCTGAAGTTAACTGTTTGAATGATATCTGTCATTATCAGCAATGAACCATCTGCAGCGAATTACACATGTGCATCAAACCTTAGCTTGGGTGTCAATTATGACCCCACTCTTTCTCAAAAAAAAGAAATACAAATTATGACCCCACTCATGTAATAAGAAGTCAAAATATTTTAGTTGGCTCTAATTCCCTTTGAGCAAGGTTTCATCATTTGTTATCTTTTCTTTGAGGCATTCATCCTATAGTTCTCTCTTTAACATTCTTCTGCACTTTATGCAGGTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAGGTCTGGCATTCTCTACTATTGAAGAAGCTACTATGGATTATGTTTTCTGATCTCTCCTTATGTTAGGGTGTGAAAAAAAAATTGTTTTTACTGTTACATTTTATTAATTAAGTAAATCTACCTTCAATGGTCAAGTCTACCTTTTTGACCCTTATCAATTGGATAAATAATAGTGTGTCAGCCTGTTTAAAAACAGATGTCACTACGTGTCCTTTCTAGAGCACTAACTAAGCACTAGCAGGATTGTAACATGATACGAGTACATCTCCATGAATGTTCAAATTTTAGGACATTATATCATATATATGAGGACAGTCAAGTGGCTGAACGCCCCTCTCCTCGTTCCGCCCTTCCTATTGGGATAGCAGCCTTGGGGCTTTGCCTGCCCTTTCTAATAAAAAATTCAGGCTCGGCCCGGGAAAGCGCTGGCAACAACTGAAAGGAAGGGGTCCATGTAGCTGCTGTGTCCGCCCCTTTACTGTCAGGAATGGCTCGTCAGTCATGTCAAAACAAATTTGAAAATAGGAATTATATGGACCTGTAATGAGCTTGCCATAACAAACTAGAAAAGAATCTAATTCCATTCAACCTATGCCTACTGGGCACATTGAATAGCTAATGGACCTAAAAGAGCATGATGAATTTGAATCTGTTAATGCAACAGAGGAAAACAAAAAATATCCATCTTTGAAATAATGGTAGATATTGAAGAAAATACATCTGTCAAGAGAATTCTCACTTTTCTACTATTCCATCTTTTGCAGTGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTGGTACGTGTACTTGCATACAAAGTCATAAATGGAGTGAGCTACTTGTTCTGGTTGATTCATCTTAACCTGCATTTTGCAGGTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCTGTAAGTGACTTAAAGTTATAGCATCCTCTTTTCTTCCGTTGAGAAAATTCTCCTTCACAGCCTTCATAACAAATTATAAACGCTTTTCGTTGTTACCCAAAATCTTTAATCTTATATTGAATATATGTAAAAAGTCTTCTGTGGTGAGTTTCGACTTAGAACAGTCTTTTTCTTCATCGTTATCTAAATATTTCCATCGTTTTTCTTTCAAGTAGCAAATGAAAAGTTAATGGAAAATTAAAATTACCATATGAGTATATCCTTGAGAGATGTAAAATTACCATATGAGTACAAAGAATTTTCCTTAGTTTTACTTAAAAATTCTTAAGTTGACGATTATATTGGTAGCAATGCCAGATCCCTGAGAAATGTACAACTGTGTTGGAAATAATTCAAGGAGGATTTTGAAACATGAAGGAAAACTTGGCTACAACTTCTAAGTACCCCACTTGTACCACCTCCATTTCAGGTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAGAAGCAAGAGGATCGTCCATCTACATCTTCCCAATTCTAATCTAATCAGGTGTTAAAAGAGTCTCCTCGGTAGGAAATATATTCTTTTTGTTCAGAAGCCACGACTTGATGTTTGATCCATGAGATAACAAGCAGGATAATTGGTGGTCTACCTACAGCACAATTCTGATACAAGCTAATGCATTAAAAAGAGCTGTCCTTTGTAGTGATACATAATCTTTTCTTTTTCTCTAGATTTTGTGGGTAGTAGAGGGAGCCCTTGAATGTTCATGGCTGCATGTATAACCTTCTGAAGAACACATCAGAATAGTTTTGTTAATTGTAAA-TTTATACAATTATATTTCTCTGTAAAAGAAGAAAGGTATATATACATATCTTTTGTTTCTCAGTCCTC</genome_strand>
        <mrna_strand>TTCTGGATCTTATG.........................................................................................GGAGTAATGGCAATTCTAAAAATCCAGCTCAATGCTGTATCAGTTGTTAACCTTGTGATGGCCGTTGGTATTGCTGTTGAATTCTGTGTCCATATAACACATGCCTTCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTG...............................................................................GTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAGAAGCAAGAGGATCGTCCATCTACATCTTCCCAATTCTAATCTAATCAGGTGTTAAAAGAGTCTCCTCGGTAGGAAATATATTCTTTTTGTTCAGAAGCCACGACTTGATGTTTGATCCATGAGATAACAAGCAGGATAATTGGTGGTCTACCTACAGCACAATTCTGATACAAGCTAATGCATTAAAAAGAGCTGTCCTTTGTAGTGATACATAATCTTTTCTTTTTCTCTAGATTTTGTGGGTAGTAGAGGGAGCCCTTGAATGTTCATGGCTGCATGTATAACCTTCTGAAG-ACACATCAGAATAGTTTTGTTAATTGTAAATTTTATAC-ATTATATTTCTCTGTAAAAGAAG-AAGGTATATATACATATCTTTTGTTTCTCAGTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548497" ref_strand="+" ref_description="SGN-E548497 [TUS-61-M1](-)">
      <seq>tgtccatataacacatgccttcttggttagcagtggagatagaaaccaacgcatgaaggaggcactgactactatgggcgcttctgtattcagtggtatcacgcttacaaagcttgtcggtgtcattgttctttgtttctcaaggacagaagtttttgtggtttactactttcaaatgtacctggctttggttcttcttggttttctacatgggctcatatttttacctgtactattaagcatttttggtccgccatcaagatgtgtgcttgtagagaagcaagaggatcgtccatctacatcttcccaattctaatctaatcaggtgttaaaagagtctcctcggtaggaaatatattctttttgttcagaagccacgacttgatgtttgatccatgagataacaagcaggataattggtggtctacctacagcacaattctgatacaagctaatgcattaaaaagagctggcctttgtagtgatacataatcttttctttttctctagattttgtgggtagtagagggagcccttgaatgttcatggctgcatgtataaccttctgaagaacacatcagaatagttttgttaattgtaaatttatacaattatatttctctgtaaaagaagaaanggtatatatacatatcttttgtttctcagtcctcaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="15635" stop="12577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15335" g_stop="15311" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15310" i_stop="14835" i_length="476">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14834" g_stop="14767" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="93" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14766" i_stop="14003" i_length="764">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14002" g_stop="13936" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="160" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13935" i_stop="13857" i_length="79">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.405" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13856" g_stop="13788" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="229" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13787" i_stop="13319" i_length="469">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.627" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13318" g_stop="12878" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="671" r_length="442" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="672" polyA_stop="682"/>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E548497" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15335" e_stop="15311"/>
          <exon e_start="14834" e_stop="14767"/>
          <exon e_start="14002" e_stop="13936"/>
          <exon e_start="13856" e_stop="13788"/>
          <exon e_start="13318" e_stop="12878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCATATAACACATGCCTTCTTGGTTAGTCTTCTATCAGAGTGATCTATCTGGTCTACTTTTCTGTTTAAAATAATGAGAGAATGAAGATCAACTTGAGTAGGTTAAGTAAGAGAATACTGTATATTAAACAAATATAATTGTCTGCAAATAATTGAGAAGATAATCCTTGTCTGAGTGAGTAGAATGAATGACTAATAGGTTCAAGTAAATCTTTATGCCCCTGAAGTTAACTGTTTGAATGATATCTGTCATTATCAGCAATGAACCATCTGCAGCGAATTACACATGTGCATCAAACCTTAGCTTGGGTGTCAATTATGACCCCACTCTTTCTCAAAAAAAAGAAATACAAATTATGACCCCACTCATGTAATAAGAAGTCAAAATATTTTAGTTGGCTCTAATTCCCTTTGAGCAAGGTTTCATCATTTGTTATCTTTTCTTTGAGGCATTCATCCTATAGTTCTCTCTTTAACATTCTTCTGCACTTTATGCAGGTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAGGTCTGGCATTCTCTACTATTGAAGAAGCTACTATGGATTATGTTTTCTGATCTCTCCTTATGTTAGGGTGTGAAAAAAAAATTGTTTTTACTGTTACATTTTATTAATTAAGTAAATCTACCTTCAATGGTCAAGTCTACCTTTTTGACCCTTATCAATTGGATAAATAATAGTGTGTCAGCCTGTTTAAAAACAGATGTCACTACGTGTCCTTTCTAGAGCACTAACTAAGCACTAGCAGGATTGTAACATGATACGAGTACATCTCCATGAATGTTCAAATTTTAGGACATTATATCATATATATGAGGACAGTCAAGTGGCTGAACGCCCCTCTCCTCGTTCCGCCCTTCCTATTGGGATAGCAGCCTTGGGGCTTTGCCTGCCCTTTCTAATAAAAAATTCAGGCTCGGCCCGGGAAAGCGCTGGCAACAACTGAAAGGAAGGGGTCCATGTAGCTGCTGTGTCCGCCCCTTTACTGTCAGGAATGGCTCGTCAGTCATGTCAAAACAAATTTGAAAATAGGAATTATATGGACCTGTAATGAGCTTGCCATAACAAACTAGAAAAGAATCTAATTCCATTCAACCTATGCCTACTGGGCACATTGAATAGCTAATGGACCTAAAAGAGCATGATGAATTTGAATCTGTTAATGCAACAGAGGAAAACAAAAAATATCCATCTTTGAAATAATGGTAGATATTGAAGAAAATACATCTGTCAAGAGAATTCTCACTTTTCTACTATTCCATCTTTTGCAGTGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTGGTACGTGTACTTGCATACAAAGTCATAAATGGAGTGAGCTACTTGTTCTGGTTGATTCATCTTAACCTGCATTTTGCAGGTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCTGTAAGTGACTTAAAGTTATAGCATCCTCTTTTCTTCCGTTGAGAAAATTCTCCTTCACAGCCTTCATAACAAATTATAAACGCTTTTCGTTGTTACCCAAAATCTTTAATCTTATATTGAATATATGTAAAAAGTCTTCTGTGGTGAGTTTCGACTTAGAACAGTCTTTTTCTTCATCGTTATCTAAATATTTCCATCGTTTTTCTTTCAAGTAGCAAATGAAAAGTTAATGGAAAATTAAAATTACCATATGAGTATATCCTTGAGAGATGTAAAATTACCATATGAGTACAAAGAATTTTCCTTAGTTTTACTTAAAAATTCTTAAGTTGACGATTATATTGGTAGCAATGCCAGATCCCTGAGAAATGTACAACTGTGTTGGAAATAATTCAAGGAGGATTTTGAAACATGAAGGAAAACTTGGCTACAACTTCTAAGTACCCCACTTGTACCACCTCCATTTCAGGTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAGAAGCAAGAGGATCGTCCATCTACATCTTCCCAATTCTAATCTAATCAGGTGTTAAAAGAGTCTCCTCGGTAGGAAATATATTCTTTTTGTTCAGAAGCCACGACTTGATGTTTGATCCATGAGATAACAAGCAGGATAATTGGTGGTCTACCTACAGCACAATTCTGATACAAGCTAATGCATTAAAAAGAGCTGTCCTTTGTAGTGATACATAATCTTTTCTTTTTCTCTAGATTTTGTGGGTAGTAGAGGGAGCCCTTGAATGTTCATGGCTGCATGTATAACCTTCTGAAGAACACATCAGAATAGTTTTGTTAATTGTAAATTTATACAATTATATTTCTCTGTAAAAGAAGAAA-GGTATATATACATATCTTTTGTTTCTCAGTCCTC</genome_strand>
        <mrna_strand>TGTCCATATAACACATGCCTTCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTG...............................................................................GTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAGAAGCAAGAGGATCGTCCATCTACATCTTCCCAATTCTAATCTAATCAGGTGTTAAAAGAGTCTCCTCGGTAGGAAATATATTCTTTTTGTTCAGAAGCCACGACTTGATGTTTGATCCATGAGATAACAAGCAGGATAATTGGTGGTCTACCTACAGCACAATTCTGATACAAGCTAATGCATTAAAAAGAGCTGGCCTTTGTAGTGATACATAATCTTTTCTTTTTCTCTAGATTTTGTGGGTAGTAGAGGGAGCCCTTGAATGTTCATGGCTGCATGTATAACCTTCTGAAGAACACATCAGAATAGTTTTGTTAATTGTAAATTTATACAATTATATTTCTCTGTAAAAGAAGAAANGGTATATATACATATCTTTTGTTTCTCAGTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309669" ref_strand="+" ref_description="SGN-E309669 [cLEY-26-A11]">
      <seq>aggtgttaaaagagtctcctcggtaggaaatatattctttttgttcagaagccacgacttgatgtttgatccatgagataacaagcaggataattggtggtctacctacagcacaattctgatacaagctaatgcattaaaaagagctgtcctttgtagtgatacataatcttttctttttctctagattttgtgggtagtagagggagcccttgaatgttcatggctgcatgtataaccttctgaagaacacatcagaatagttttgttaattgtaaatttatacaattatatttctctgtaaaagaagaaaggtatatatacatatcttttgtttctcagtcctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="13524" stop="12577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13224" g_stop="12878" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="348" polyA_stop="357"/>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E309669" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13224" e_stop="12878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGTTAAAAGAGTCTCCTCGGTAGGAAATATATTCTTTTTGTTCAGAAGCCACGACTTGATGTTTGATCCATGAGATAACAAGCAGGATAATTGGTGGTCTACCTACAGCACAATTCTGATACAAGCTAATGCATTAAAAAGAGCTGTCCTTTGTAGTGATACATAATCTTTTCTTTTTCTCTAGATTTTGTGGGTAGTAGAGGGAGCCCTTGAATGTTCATGGCTGCATGTATAACCTTCTGAAGAACACATCAGAATAGTTTTGTTAATTGTAAATTTATACAATTATATTTCTCTGTAAAAGAAGAAAGGTATATATACATATCTTTTGTTTCTCAGTCCTC</genome_strand>
        <mrna_strand>AGGTGTTAAAAGAGTCTCCTCGGTAGGAAATATATTCTTTTTGTTCAGAAGCCACGACTTGATGTTTGATCCATGAGATAACAAGCAGGATAATTGGTGGTCTACCTACAGCACAATTCTGATACAAGCTAATGCATTAAAAAGAGCTGTCCTTTGTAGTGATACATAATCTTTTCTTTTTCTCTAGATTTTGTGGGTAGTAGAGGGAGCCCTTGAATGTTCATGGCTGCATGTATAACCTTCTGAAGAACACATCAGAATAGTTTTGTTAATTGTAAATTTATACAATTATATTTCTCTGTAAAAGAAGAAAGGTATATATACATATCTTTTGTTTCTCAGTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623043" ref_strand="-" ref_description="SGN-E623043 [73417]">
      <seq>gttagcaatggagatagaaacctacgcatgaaaggaggcgctgactactatgggcgcttctgtagttcagtggtatcacgcttacaaagcttgtcggtgtcattgttctttgtttttcaaggacagaagtttttgctggtttactactttcaaatgtacctggctttggttctccttggttttctacacgggcttatattgtttacctgtactattaagcatttttggtccgccatcaagatgtgtgcttgtagagaagcaagaggatcggccatctacatcttcccaattctaatctaatcaggtgttaaagagtctcctcggtaggaaatatattctttttgttcagaagccacgacttgatgtttgatccataagataacaagcaggataattggtgatctacctacagcacaattctgatacaagctaatgcattcaaaagagcctgccttttgtagggatacataatcttttcgtttttctctagattttgtgggtagtagagggagcccttgaatgttcatggctgcatgtataaccttgctgaagaacacatcagaatagttttgttaattgtaaagttaatacaattatatttctctgtaaaagaagtaaaaaaagaaaggtatatatacatatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="15134" stop="12592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14834" g_stop="14767" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14766" i_stop="14003" i_length="764">
            <donor d_prob="0.996" d_score="0.88"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14002" g_stop="13936" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="138" r_length="68" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13935" i_stop="13857" i_length="79">
            <donor d_prob="0.674" d_score="0.94"/>
            <acceptor a_prob="0.405" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13856" g_stop="13788" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="208" r_length="70" r_score="0.928"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13787" i_stop="13319" i_length="469">
            <donor d_prob="0.968" d_score="0.90"/>
            <acceptor a_prob="0.627" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13318" g_stop="12911" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="619" r_length="411" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E623043" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623043" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14834" e_stop="14767"/>
          <exon e_start="14002" e_stop="13936"/>
          <exon e_start="13856" e_stop="13788"/>
          <exon e_start="13318" e_stop="12911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGCAGTGGAGATAGAAACCAACGCATG-AAGGAGGCACTGACTACTATGGGCGCTTCTGTA-TTCAGGTCTGGCATTCTCTACTATTGAAGAAGCTACTATGGATTATGTTTTCTGATCTCTCCTTATGTTAGGGTGTGAAAAAAAAATTGTTTTTACTGTTACATTTTATTAATTAAGTAAATCTACCTTCAATGGTCAAGTCTACCTTTTTGACCCTTATCAATTGGATAAATAATAGTGTGTCAGCCTGTTTAAAAACAGATGTCACTACGTGTCCTTTCTAGAGCACTAACTAAGCACTAGCAGGATTGTAACATGATACGAGTACATCTCCATGAATGTTCAAATTTTAGGACATTATATCATATATATGAGGACAGTCAAGTGGCTGAACGCCCCTCTCCTCGTTCCGCCCTTCCTATTGGGATAGCAGCCTTGGGGCTTTGCCTGCCCTTTCTAATAAAAAATTCAGGCTCGGCCCGGGAAAGCGCTGGCAACAACTGAAAGGAAGGGGTCCATGTAGCTGCTGTGTCCGCCCCTTTACTGTCAGGAATGGCTCGTCAGTCATGTCAAAACAAATTTGAAAATAGGAATTATATGGACCTGTAATGAGCTTGCCATAACAAACTAGAAAAGAATCTAATTCCATTCAACCTATGCCTACTGGGCACATTGAATAGCTAATGGACCTAAAAGAGCATGATGAATTTGAATCTGTTAATGCAACAGAGGAAAACAAAAAATATCCATCTTTGAAATAATGGTAGATATTGAAGAAAATACATCTGTCAAGAGAATTCTCACTTTTCTACTATTCCATCTTTTGCAGTGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTG-TGGTACGTGTACTTGCATACAAAGTCATAAATGGAGTGAGCTACTTGTTCTGGTTGATTCATCTTAACCTGCATTTTGCAGGTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATT-TTTACCTGTAAGTGACTTAAAGTTATAGCATCCTCTTTTCTTCCGTTGAGAAAATTCTCCTTCACAGCCTTCATAACAAATTATAAACGCTTTTCGTTGTTACCCAAAATCTTTAATCTTATATTGAATATATGTAAAAAGTCTTCTGTGGTGAGTTTCGACTTAGAACAGTCTTTTTCTTCATCGTTATCTAAATATTTCCATCGTTTTTCTTTCAAGTAGCAAATGAAAAGTTAATGGAAAATTAAAATTACCATATGAGTATATCCTTGAGAGATGTAAAATTACCATATGAGTACAAAGAATTTTCCTTAGTTTTACTTAAAAATTCTTAAGTTGACGATTATATTGGTAGCAATGCCAGATCCCTGAGAAATGTACAACTGTGTTGGAAATAATTCAAGGAGGATTTTGAAACATGAAGGAAAACTTGGCTACAACTTCTAAGTACCCCACTTGTACCACCTCCATTTCAGGTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAGAAGCAAGAGGATCGTCCATCTACATCTTCCCAATTCTAATCTAATCAGGTGTTAAAAGAGTCTCCTCGGTAGGAAATATATTCTTTTTGTTCAGAAGCCACGACTTGATGTTTGATCCATGAGATAACAAGCAGGATAATTGGTGGTCTACCTACAGCACAATTCTGATACAAGCTAATGCATTAAAAAGAG-CTGTCCTTTGTAGTGATACATAATCTTTTC-TTTTTCTCTAGATTTTGTGGGTAGTAGAGGGAGCCCTTGAATGTTCATGGCTGCATGTATAACCTT-CTGAAGAACACATCAGAATAGTTTTGTTAATTGTAAA-TTTATACAATTATATTTCTCTGTAAAAGAAGAAAG</genome_strand>
        <mrna_strand>GTTAGCAATGGAGATAGAAACCTACGCATGAAAGGAGGCGCTGACTACTATGGGCGCTTCTGTAGTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTTTCAAGGACAGAAGTTTTTGCTG...............................................................................GTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTCCTTGGTTTTCTACACGGGCTTATATTGTTTACCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAGAAGCAAGAGGATCGGCCATCTACATCTTCCCAATTCTAATCTAATCAGGTGTT-AAAGAGTCTCCTCGGTAGGAAATATATTCTTTTTGTTCAGAAGCCACGACTTGATGTTTGATCCATAAGATAACAAGCAGGATAATTGGTGATCTACCTACAGCACAATTCTGATACAAGCTAATGCATTCAAAAGAGCCTGCCTTTTGTAGGGATACATAATCTTTTCGTTTTTCTCTAGATTTTGTGGGTAGTAGAGGGAGCCCTTGAATGTTCATGGCTGCATGTATAACCTTGCTGAAGAACACATCAGAATAGTTTTGTTAATTGTAAAGTTAATACAATTATATTTCTCTGTAAAAGAAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543777" ref_strand="+" ref_description="SGN-E543777 [TUS-65-M8](-)">
      <seq>cacatgccttcttggttagcagtggagatagaaaccaacgcatgaaggaggcactgactactatgggcgcttctgtattcagtggtatcacgcttacaaagcttgtcggtgtcattgttctttgtttctcaaggacagaagtttttgtggtttactactttcaaatgtacctggctttggttcttcttggttttctacatgggctcatatttttacctgtactattaagcatttttggtccgccatcaagatgtgtgcttgtagagaagcaagaggatcgtccatctacatcttcccaattctaatctaatcaggtgttaaaagagtctcctcggtaggaaatatattctttttgttcagaagccacgacttgatgtttgatccatgagataacaagcaggataattggtggtctacctacagcacaattctgatacaagctaatgcattaaaaagagctgtcctttgtagtgatacataatcttttctttttctctagattttgtgggtagtagagggagcccttgaatgttcatggctgcatgtataaccttctgaagaacacatcagaatagttttgttaattgtaaatttatacaattatattctcgcaaaaatagaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="15135" stop="12612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14834" g_stop="14767" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="82" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14766" i_stop="14003" i_length="764">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14002" g_stop="13936" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="149" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13935" i_stop="13857" i_length="79">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.405" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13856" g_stop="13788" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="218" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13787" i_stop="13319" i_length="469">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.627" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13318" g_stop="12911" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="624" r_length="406" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E543777" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14834" e_stop="14767"/>
          <exon e_start="14002" e_stop="13936"/>
          <exon e_start="13856" e_stop="13788"/>
          <exon e_start="13318" e_stop="12911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAGGTCTGGCATTCTCTACTATTGAAGAAGCTACTATGGATTATGTTTTCTGATCTCTCCTTATGTTAGGGTGTGAAAAAAAAATTGTTTTTACTGTTACATTTTATTAATTAAGTAAATCTACCTTCAATGGTCAAGTCTACCTTTTTGACCCTTATCAATTGGATAAATAATAGTGTGTCAGCCTGTTTAAAAACAGATGTCACTACGTGTCCTTTCTAGAGCACTAACTAAGCACTAGCAGGATTGTAACATGATACGAGTACATCTCCATGAATGTTCAAATTTTAGGACATTATATCATATATATGAGGACAGTCAAGTGGCTGAACGCCCCTCTCCTCGTTCCGCCCTTCCTATTGGGATAGCAGCCTTGGGGCTTTGCCTGCCCTTTCTAATAAAAAATTCAGGCTCGGCCCGGGAAAGCGCTGGCAACAACTGAAAGGAAGGGGTCCATGTAGCTGCTGTGTCCGCCCCTTTACTGTCAGGAATGGCTCGTCAGTCATGTCAAAACAAATTTGAAAATAGGAATTATATGGACCTGTAATGAGCTTGCCATAACAAACTAGAAAAGAATCTAATTCCATTCAACCTATGCCTACTGGGCACATTGAATAGCTAATGGACCTAAAAGAGCATGATGAATTTGAATCTGTTAATGCAACAGAGGAAAACAAAAAATATCCATCTTTGAAATAATGGTAGATATTGAAGAAAATACATCTGTCAAGAGAATTCTCACTTTTCTACTATTCCATCTTTTGCAGTGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTGGTACGTGTACTTGCATACAAAGTCATAAATGGAGTGAGCTACTTGTTCTGGTTGATTCATCTTAACCTGCATTTTGCAGGTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCTGTAAGTGACTTAAAGTTATAGCATCCTCTTTTCTTCCGTTGAGAAAATTCTCCTTCACAGCCTTCATAACAAATTATAAACGCTTTTCGTTGTTACCCAAAATCTTTAATCTTATATTGAATATATGTAAAAAGTCTTCTGTGGTGAGTTTCGACTTAGAACAGTCTTTTTCTTCATCGTTATCTAAATATTTCCATCGTTTTTCTTTCAAGTAGCAAATGAAAAGTTAATGGAAAATTAAAATTACCATATGAGTATATCCTTGAGAGATGTAAAATTACCATATGAGTACAAAGAATTTTCCTTAGTTTTACTTAAAAATTCTTAAGTTGACGATTATATTGGTAGCAATGCCAGATCCCTGAGAAATGTACAACTGTGTTGGAAATAATTCAAGGAGGATTTTGAAACATGAAGGAAAACTTGGCTACAACTTCTAAGTACCCCACTTGTACCACCTCCATTTCAGGTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAGAAGCAAGAGGATCGTCCATCTACATCTTCCCAATTCTAATCTAATCAGGTGTTAAAAGAGTCTCCTCGGTAGGAAATATATTCTTTTTGTTCAGAAGCCACGACTTGATGTTTGATCCATGAGATAACAAGCAGGATAATTGGTGGTCTACCTACAGCACAATTCTGATACAAGCTAATGCATTAAAAAGAGCTGTCCTTTGTAGTGATACATAATCTTTTCTTTTTCTCTAGATTTTGTGGGTAGTAGAGGGAGCCCTTGAATGTTCATGGCTGCATGTATAACCTTCTGAAGAACACATCAGAATAGTTTTGTTAATTGTAAATTTATACAATTATATTTCTCTGTAAAAGAAGAAAG</genome_strand>
        <mrna_strand>GTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTG...............................................................................GTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAGAAGCAAGAGGATCGTCCATCTACATCTTCCCAATTCTAATCTAATCAGGTGTTAAAAGAGTCTCCTCGGTAGGAAATATATTCTTTTTGTTCAGAAGCCACGACTTGATGTTTGATCCATGAGATAACAAGCAGGATAATTGGTGGTCTACCTACAGCACAATTCTGATACAAGCTAATGCATTAAAAAGAGCTGTCCTTTGTAGTGATACATAATCTTTTCTTTTTCTCTAGATTTTGTGGGTAGTAGAGGGAGCCCTTGAATGTTCATGGCTGCATGTATAACCTTCTGAAGAACACATCAGAATAGTTTTGTTAATTGTAAATTTATACAATTATA-TTCTC-GCAAAAATAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543770" ref_strand="+" ref_description="SGN-E543770 [TUS-65-M4](-)">
      <seq>cacatgccttcttggttagcagtggagatagaaaccaacgcatgaaggaggcactgactactatgggcgcttctgtattcagtggtatcacgcttacaaagcttgtcggtgtcattgttctttgtttctcaaggacagaagtttttgtggtttactactttcaaatgtacctggctttggttcttcttggttttctacatgggctcatatttttacctgtactattaagcatttttggtccgccatcaagatgtgtgcttgtagagaagcaagaggatcgtccatctacatcttcccaattctaatctaatcaggtgttaaaagagtctcctcggtaggaaatatattctttttgttcagaagccacgacttgatgtttgatccatgagataacaagcaggataattggtggtctacctacagcacaattctgatacaagctaatgcattaaaaagagctgtcctttgtagtgatacataatcttttctttttctctagattttgtgggtagtagagggagcccttgaatgttcatggctgcatgtataaccttctgaagaacacatcagaatagttttgttaattgtaaatttatacaattatattctctgaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="15135" stop="12612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14834" g_stop="14767" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="82" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14766" i_stop="14003" i_length="764">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14002" g_stop="13936" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="149" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13935" i_stop="13857" i_length="79">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.405" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13856" g_stop="13788" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="218" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13787" i_stop="13319" i_length="469">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.627" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13318" g_stop="12911" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="625" r_length="407" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E543770" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14834" e_stop="14767"/>
          <exon e_start="14002" e_stop="13936"/>
          <exon e_start="13856" e_stop="13788"/>
          <exon e_start="13318" e_stop="12911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAGGTCTGGCATTCTCTACTATTGAAGAAGCTACTATGGATTATGTTTTCTGATCTCTCCTTATGTTAGGGTGTGAAAAAAAAATTGTTTTTACTGTTACATTTTATTAATTAAGTAAATCTACCTTCAATGGTCAAGTCTACCTTTTTGACCCTTATCAATTGGATAAATAATAGTGTGTCAGCCTGTTTAAAAACAGATGTCACTACGTGTCCTTTCTAGAGCACTAACTAAGCACTAGCAGGATTGTAACATGATACGAGTACATCTCCATGAATGTTCAAATTTTAGGACATTATATCATATATATGAGGACAGTCAAGTGGCTGAACGCCCCTCTCCTCGTTCCGCCCTTCCTATTGGGATAGCAGCCTTGGGGCTTTGCCTGCCCTTTCTAATAAAAAATTCAGGCTCGGCCCGGGAAAGCGCTGGCAACAACTGAAAGGAAGGGGTCCATGTAGCTGCTGTGTCCGCCCCTTTACTGTCAGGAATGGCTCGTCAGTCATGTCAAAACAAATTTGAAAATAGGAATTATATGGACCTGTAATGAGCTTGCCATAACAAACTAGAAAAGAATCTAATTCCATTCAACCTATGCCTACTGGGCACATTGAATAGCTAATGGACCTAAAAGAGCATGATGAATTTGAATCTGTTAATGCAACAGAGGAAAACAAAAAATATCCATCTTTGAAATAATGGTAGATATTGAAGAAAATACATCTGTCAAGAGAATTCTCACTTTTCTACTATTCCATCTTTTGCAGTGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTGGTACGTGTACTTGCATACAAAGTCATAAATGGAGTGAGCTACTTGTTCTGGTTGATTCATCTTAACCTGCATTTTGCAGGTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCTGTAAGTGACTTAAAGTTATAGCATCCTCTTTTCTTCCGTTGAGAAAATTCTCCTTCACAGCCTTCATAACAAATTATAAACGCTTTTCGTTGTTACCCAAAATCTTTAATCTTATATTGAATATATGTAAAAAGTCTTCTGTGGTGAGTTTCGACTTAGAACAGTCTTTTTCTTCATCGTTATCTAAATATTTCCATCGTTTTTCTTTCAAGTAGCAAATGAAAAGTTAATGGAAAATTAAAATTACCATATGAGTATATCCTTGAGAGATGTAAAATTACCATATGAGTACAAAGAATTTTCCTTAGTTTTACTTAAAAATTCTTAAGTTGACGATTATATTGGTAGCAATGCCAGATCCCTGAGAAATGTACAACTGTGTTGGAAATAATTCAAGGAGGATTTTGAAACATGAAGGAAAACTTGGCTACAACTTCTAAGTACCCCACTTGTACCACCTCCATTTCAGGTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAGAAGCAAGAGGATCGTCCATCTACATCTTCCCAATTCTAATCTAATCAGGTGTTAAAAGAGTCTCCTCGGTAGGAAATATATTCTTTTTGTTCAGAAGCCACGACTTGATGTTTGATCCATGAGATAACAAGCAGGATAATTGGTGGTCTACCTACAGCACAATTCTGATACAAGCTAATGCATTAAAAAGAGCTGTCCTTTGTAGTGATACATAATCTTTTCTTTTTCTCTAGATTTTGTGGGTAGTAGAGGGAGCCCTTGAATGTTCATGGCTGCATGTATAACCTTCTGAAGAACACATCAGAATAGTTTTGTTAATTGTAAATTTATACAATTATATTTCTCTGTAAAAGAAGAAAG</genome_strand>
        <mrna_strand>GTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTG...............................................................................GTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAGAAGCAAGAGGATCGTCCATCTACATCTTCCCAATTCTAATCTAATCAGGTGTTAAAAGAGTCTCCTCGGTAGGAAATATATTCTTTTTGTTCAGAAGCCACGACTTGATGTTTGATCCATGAGATAACAAGCAGGATAATTGGTGGTCTACCTACAGCACAATTCTGATACAAGCTAATGCATTAAAAAGAGCTGTCCTTTGTAGTGATACATAATCTTTTCTTTTTCTCTAGATTTTGTGGGTAGTAGAGGGAGCCCTTGAATGTTCATGGCTGCATGTATAACCTTCTGAAGAACACATCAGAATAGTTTTGTTAATTGTAAATTTATACAATTATA-TTCTCTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306490" ref_strand="+" ref_description="SGN-E306490 [cLEX-13-C18]">
      <seq>acatgccttgttggttagcagtggagatagaaaccaacgcatgaaggaggcactgactactatgggcgcttctgtattcagtggtatcacgcttacaaagcttgtcggtgtcattgttctttgtttctcaaggacagaagtttttgtggtttactactttcaaatgtacctggctttggttcttcttggttttctacatgggctcatatttttacctgtactattaagcatttttggtccgccatcaagatgtgtgcttgtagagaagcaagaggatcgtccatctacatcttcccaattctaatctaatcaggtgttaaaagagtctcctcggtaggaaatatattctttttgttcagaagccacgacttgatgtttgatccatgagataacaagcaggataattggtggtctacctacagcacaattctgatacaagctaatgcattaaaaagagctgtcctttgtagtgatacataatcttttctttttctctagattttgtgggtagtagagggagcccttgaatgttcatggctgcatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="15139" stop="12690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14834" g_stop="14767" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="81" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14766" i_stop="14003" i_length="764">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14002" g_stop="13936" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="148" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13935" i_stop="13857" i_length="79">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.405" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13856" g_stop="13788" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="217" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13787" i_stop="13319" i_length="469">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.627" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13318" g_stop="12991" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="545" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E306490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14834" e_stop="14767"/>
          <exon e_start="14002" e_stop="13936"/>
          <exon e_start="13856" e_stop="13788"/>
          <exon e_start="13318" e_stop="12991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAGGTCTGGCATTCTCTACTATTGAAGAAGCTACTATGGATTATGTTTTCTGATCTCTCCTTATGTTAGGGTGTGAAAAAAAAATTGTTTTTACTGTTACATTTTATTAATTAAGTAAATCTACCTTCAATGGTCAAGTCTACCTTTTTGACCCTTATCAATTGGATAAATAATAGTGTGTCAGCCTGTTTAAAAACAGATGTCACTACGTGTCCTTTCTAGAGCACTAACTAAGCACTAGCAGGATTGTAACATGATACGAGTACATCTCCATGAATGTTCAAATTTTAGGACATTATATCATATATATGAGGACAGTCAAGTGGCTGAACGCCCCTCTCCTCGTTCCGCCCTTCCTATTGGGATAGCAGCCTTGGGGCTTTGCCTGCCCTTTCTAATAAAAAATTCAGGCTCGGCCCGGGAAAGCGCTGGCAACAACTGAAAGGAAGGGGTCCATGTAGCTGCTGTGTCCGCCCCTTTACTGTCAGGAATGGCTCGTCAGTCATGTCAAAACAAATTTGAAAATAGGAATTATATGGACCTGTAATGAGCTTGCCATAACAAACTAGAAAAGAATCTAATTCCATTCAACCTATGCCTACTGGGCACATTGAATAGCTAATGGACCTAAAAGAGCATGATGAATTTGAATCTGTTAATGCAACAGAGGAAAACAAAAAATATCCATCTTTGAAATAATGGTAGATATTGAAGAAAATACATCTGTCAAGAGAATTCTCACTTTTCTACTATTCCATCTTTTGCAGTGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTGGTACGTGTACTTGCATACAAAGTCATAAATGGAGTGAGCTACTTGTTCTGGTTGATTCATCTTAACCTGCATTTTGCAGGTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCTGTAAGTGACTTAAAGTTATAGCATCCTCTTTTCTTCCGTTGAGAAAATTCTCCTTCACAGCCTTCATAACAAATTATAAACGCTTTTCGTTGTTACCCAAAATCTTTAATCTTATATTGAATATATGTAAAAAGTCTTCTGTGGTGAGTTTCGACTTAGAACAGTCTTTTTCTTCATCGTTATCTAAATATTTCCATCGTTTTTCTTTCAAGTAGCAAATGAAAAGTTAATGGAAAATTAAAATTACCATATGAGTATATCCTTGAGAGATGTAAAATTACCATATGAGTACAAAGAATTTTCCTTAGTTTTACTTAAAAATTCTTAAGTTGACGATTATATTGGTAGCAATGCCAGATCCCTGAGAAATGTACAACTGTGTTGGAAATAATTCAAGGAGGATTTTGAAACATGAAGGAAAACTTGGCTACAACTTCTAAGTACCCCACTTGTACCACCTCCATTTCAGGTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAGAAGCAAGAGGATCGTCCATCTACATCTTCCCAATTCTAATCTAATCAGGTGTTAAAAGAGTCTCCTCGGTAGGAAATATATTCTTTTTGTTCAGAAGCCACGACTTGATGTTTGATCCATGAGATAACAAGCAGGATAATTGGTGGTCTACCTACAGCACAATTCTGATACAAGCTAATGCATTAAAAAGAGCTGTCCTTTGTAGTGATACATAATCTTTTCTTTTTCTCTAGATTTTGTGGGTAGTAGAGGGAGCCCTTGAATGTTCATGGCTGCATGT</genome_strand>
        <mrna_strand>GTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTG...............................................................................GTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAGAAGCAAGAGGATCGTCCATCTACATCTTCCCAATTCTAATCTAATCAGGTGTTAAAAGAGTCTCCTCGGTAGGAAATATATTCTTTTTGTTCAGAAGCCACGACTTGATGTTTGATCCATGAGATAACAAGCAGGATAATTGGTGGTCTACCTACAGCACAATTCTGATACAAGCTAATGCATTAAAAAGAGCTGTCCTTTGTAGTGATACATAATCTTTTCTTTTTCTCTAGATTTTGTGGGTAGTAGAGGGAGCCCTTGAATGTTCATGGCTGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543771" ref_strand="+" ref_description="SGN-E543771 [TUS-65-M4]">
      <seq>cacatgccttcttggttagcagtggagatagaaaccaacgcatgaaggaggcactgactactatgggcgcttctgtattcagtggtatcacgcttacaaagcttgtcggtgtcattgttctttgtttctcaaggacagaagtttttgtggtttactactttcaaatgtacctggctttggttcttcttggttttctacatgggctcatatttttacctgtactattaagcatttttggtccgccatcaagatgtgtgcttgtagagaagcaagaggatcgtccatctacatcttcccaattctaatctaatcaggtgttaaaagagtctcctcggtaggaaatatattctttttgttcagaagccacgacttgatgtttgatccatgagataacaagcaggataattggtggtctacctacagcacaattctgatacaagctaatgcattaaaaagagctgtcctttgtagtgatacataatcttttctttttctctagattttgtgggtagtaaaggggagcccttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="15135" stop="12708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14834" g_stop="14767" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="82" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14766" i_stop="14003" i_length="764">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14002" g_stop="13936" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="149" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13935" i_stop="13857" i_length="79">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.405" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13856" g_stop="13788" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="218" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13787" i_stop="13319" i_length="469">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.627" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13318" g_stop="13008" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="530" r_length="312" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E543771" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14834" e_stop="14767"/>
          <exon e_start="14002" e_stop="13936"/>
          <exon e_start="13856" e_stop="13788"/>
          <exon e_start="13318" e_stop="13008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAGGTCTGGCATTCTCTACTATTGAAGAAGCTACTATGGATTATGTTTTCTGATCTCTCCTTATGTTAGGGTGTGAAAAAAAAATTGTTTTTACTGTTACATTTTATTAATTAAGTAAATCTACCTTCAATGGTCAAGTCTACCTTTTTGACCCTTATCAATTGGATAAATAATAGTGTGTCAGCCTGTTTAAAAACAGATGTCACTACGTGTCCTTTCTAGAGCACTAACTAAGCACTAGCAGGATTGTAACATGATACGAGTACATCTCCATGAATGTTCAAATTTTAGGACATTATATCATATATATGAGGACAGTCAAGTGGCTGAACGCCCCTCTCCTCGTTCCGCCCTTCCTATTGGGATAGCAGCCTTGGGGCTTTGCCTGCCCTTTCTAATAAAAAATTCAGGCTCGGCCCGGGAAAGCGCTGGCAACAACTGAAAGGAAGGGGTCCATGTAGCTGCTGTGTCCGCCCCTTTACTGTCAGGAATGGCTCGTCAGTCATGTCAAAACAAATTTGAAAATAGGAATTATATGGACCTGTAATGAGCTTGCCATAACAAACTAGAAAAGAATCTAATTCCATTCAACCTATGCCTACTGGGCACATTGAATAGCTAATGGACCTAAAAGAGCATGATGAATTTGAATCTGTTAATGCAACAGAGGAAAACAAAAAATATCCATCTTTGAAATAATGGTAGATATTGAAGAAAATACATCTGTCAAGAGAATTCTCACTTTTCTACTATTCCATCTTTTGCAGTGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTGGTACGTGTACTTGCATACAAAGTCATAAATGGAGTGAGCTACTTGTTCTGGTTGATTCATCTTAACCTGCATTTTGCAGGTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCTGTAAGTGACTTAAAGTTATAGCATCCTCTTTTCTTCCGTTGAGAAAATTCTCCTTCACAGCCTTCATAACAAATTATAAACGCTTTTCGTTGTTACCCAAAATCTTTAATCTTATATTGAATATATGTAAAAAGTCTTCTGTGGTGAGTTTCGACTTAGAACAGTCTTTTTCTTCATCGTTATCTAAATATTTCCATCGTTTTTCTTTCAAGTAGCAAATGAAAAGTTAATGGAAAATTAAAATTACCATATGAGTATATCCTTGAGAGATGTAAAATTACCATATGAGTACAAAGAATTTTCCTTAGTTTTACTTAAAAATTCTTAAGTTGACGATTATATTGGTAGCAATGCCAGATCCCTGAGAAATGTACAACTGTGTTGGAAATAATTCAAGGAGGATTTTGAAACATGAAGGAAAACTTGGCTACAACTTCTAAGTACCCCACTTGTACCACCTCCATTTCAGGTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAGAAGCAAGAGGATCGTCCATCTACATCTTCCCAATTCTAATCTAATCAGGTGTTAAAAGAGTCTCCTCGGTAGGAAATATATTCTTTTTGTTCAGAAGCCACGACTTGATGTTTGATCCATGAGATAACAAGCAGGATAATTGGTGGTCTACCTACAGCACAATTCTGATACAAGCTAATGCATTAAAAAGAGCTGTCCTTTGTAGTGATACATAATCTTTTCTTTTTCTCTAGATTTTGTGGGTAGTAGA-GGGAGCCCTTGAA</genome_strand>
        <mrna_strand>GTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTG...............................................................................GTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAGAAGCAAGAGGATCGTCCATCTACATCTTCCCAATTCTAATCTAATCAGGTGTTAAAAGAGTCTCCTCGGTAGGAAATATATTCTTTTTGTTCAGAAGCCACGACTTGATGTTTGATCCATGAGATAACAAGCAGGATAATTGGTGGTCTACCTACAGCACAATTCTGATACAAGCTAATGCATTAAAAAGAGCTGTCCTTTGTAGTGATACATAATCTTTTCTTTTTCTCTAGATTTTGTGGGTAGTAAAGGGGAGCCCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541123" ref_strand="+" ref_description="SGN-E541123 [TUS-61-M1]">
      <seq>aattaaagcatcagcctttcgtacatatcacacacctcttaacaaacaggttgactatgtcaattctatgagagctgcacgagaattcagttcaagggtttctgattctctaaagatggaggtcttcccgtatgcagtgttttatatgttctttgagcaatatttaagcatatggaggacagccctaattaacttagcgattgctattggtgccgtatttattgtatgcttagttatcacttgtagtttttggacttcagcaattatcttgctcgtgctgaccatgattgttctggatcttatgggagtaatggcaattctaaaaatccagctcaatgctgtatcagttgttaaccttgtgatggccgttggtattgctgttgaattctgtgtccatataacacatgccttcttggttagcagtggagatagaaaccaacgcatgaaggaggcactgactactatgggcgcttctgtattcagtggtatcacgcttacaaagcttgtcggtgtcattgttctttgtttctcaaggacagaagtttttgtggtttactactttcaaatgtacctggctttggttcttcttggttttctacatgggctcatatttttacctgtactattaagcatttttggtccgccatcaagatgtgtgcttgtagagaagcnagaggatcgtccatctacatcttcccaattctaatctaatcaggtggtaaaagagtctcctcggtaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="17356" stop="12895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17056" g_stop="17008" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17007" i_stop="16920" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16919" g_stop="16854" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="115" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16853" i_stop="16025" i_length="829">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16024" g_stop="15931" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="209" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15930" i_stop="15730" i_length="201">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.364" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15729" g_stop="15693" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="246" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15692" i_stop="15569" i_length="124">
            <donor d_prob="0.562" d_score="0.00"/>
            <acceptor a_prob="0.701" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15568" g_stop="15511" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="304" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15510" i_stop="15422" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15421" g_stop="15311" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="415" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15310" i_stop="14835" i_length="476">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14834" g_stop="14767" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="483" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14766" i_stop="14003" i_length="764">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14002" g_stop="13936" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="550" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="13935" i_stop="13857" i_length="79">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.405" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="13856" g_stop="13788" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="619" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="13787" i_stop="13319" i_length="469">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.627" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="13318" g_stop="13195" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="743" r_length="124" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E541123" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17056" e_stop="17008"/>
          <exon e_start="16919" e_stop="16854"/>
          <exon e_start="16024" e_stop="15931"/>
          <exon e_start="15729" e_stop="15693"/>
          <exon e_start="15568" e_stop="15511"/>
          <exon e_start="15421" e_stop="15311"/>
          <exon e_start="14834" e_stop="14767"/>
          <exon e_start="14002" e_stop="13936"/>
          <exon e_start="13856" e_stop="13788"/>
          <exon e_start="13318" e_stop="13195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAAGCATCAGCCTTTCGTACATATCACACACCTCTTAACAAACAGGTATATAATCATTCACAACCCTTTACCTTATAGTTCACTAAACTTTGTCTAGAGGTCCATGTGTTTGATCTTAACCCATCTTCTTCAGGTTGACTATGTCAATTCTATGAGAGCTGCACGAGAATTCAGTTCAAGGGTTTCTGATTCTCTAAAGGTAATTTCTGAATGCAGCATAATGAAGTATTGCTGTCACTCTCAGGAGCTTAACTGTTTGGCCTGTTTTTGTTGTCTCTACTGATTTTTTTTTAATGACCACTACTGAGATTCTCTCTTTTCTTTTAATTTGTTCATCTATCAGTTATACATTCTGATGATAAACTAATGGTACTGTCCGCAAGCAAGTTCTGATTTTCCATTATAGCTTGCAGAACATTGTCATTAGTGTATTCAACTCCTTTATTTGTGTACTGATAATTACAGTTTATTTAAGAATATTAAGACGTTTATATCAAGATTGTTGCTGCGTCATGAATGTGAAATATGGTAAATTTGATAAGTATAGCAGCAATAAGGTCTTCTATATAGAGTACTTTTACTTCCTTTTATGCCAAATCTGACTGTACCAGAACAGAAGGAAGATAATCTGGAGTAGTGATTATCTGATCCAAAAACCAAAAGGCATGTCATAGTTGTAATATTAAGGTTTTAGAAAGTTTAGGTGAAAAAAAAATCATTGTGGTACTTTCGAGAGATTCTGGAGGTTAGATATTTGTATATCGTGTCTTGTAGATTTTATCTAAGTAGAAAATACTCATCTGTACTTATAAGATTCCAGGTAAAAAGGAAGAACGAATTAGGATAGTGGCATAAATGGAAATTGTGCCCAAGTGCAAGAGAGTTCTACACCCTACAATTTATACCCCATAATAAGTTGCTTCTGATCTGTGATTTGTCCCATTATCTTCTTCTGGCAATTACACACTTGGCATGCATTTCCATAAGTTCTGTGTATTAGCCACGACTTACCTCTTTCGTTTCTGCAGATGGAGGTCTTCCCGTATGCAGTGTTTTATATGTTCTTTGAGCAATATTTAAGCATATGGAGGACAGCCCTAATTAACTTAGCGATTGCTATTGGTCAGTGTCATCTCTCTGTACTTAATTTAATTCACCTTTCAGCTGATGCATGACATATCTTTAATTATGTGGATATTTTGAAAAAAAAAATTCTCTTTTTGTCTGCTGGTTATCATTTCTATTGGAAGCATTGGGTAGTTTTAAAACGACTAAGACCATTGAGAGACATTAACTATGTATTTCTTTTTTCATTTTCAACAGGTGCCGTATTTATTGTATGCTTAGTTATCACTTGTAGGTTAGTATATTATCTCTTGGAATGCTATCCATTCCTATCCTTTCTTGCTTTCTTGAACAAAACACATTTATTTTTTGTATCTATAAGATATAACTCTGTTTTGTTTGACCTTTGCTACATCTAGTTTTTGGACTTCAGCAATTATCTTGCTCGTGCTGACCATGATTGTTCTGGATCTTATGGTATGTTTTCCTCTTTGAACAATTGTTTGAGTTCATATATTACACCTGATTTTCTCTCTCTAGCAGTGACATCTTACATCATTTTGCAGGGAGTAATGGCAATTCTAAAAATCCAGCTCAATGCTGTATCAGTTGTTAACCTTGTGATGGCCGTTGGTATTGCTGTTGAATTCTGTGTCCATATAACACATGCCTTCTTGGTTAGTCTTCTATCAGAGTGATCTATCTGGTCTACTTTTCTGTTTAAAATAATGAGAGAATGAAGATCAACTTGAGTAGGTTAAGTAAGAGAATACTGTATATTAAACAAATATAATTGTCTGCAAATAATTGAGAAGATAATCCTTGTCTGAGTGAGTAGAATGAATGACTAATAGGTTCAAGTAAATCTTTATGCCCCTGAAGTTAACTGTTTGAATGATATCTGTCATTATCAGCAATGAACCATCTGCAGCGAATTACACATGTGCATCAAACCTTAGCTTGGGTGTCAATTATGACCCCACTCTTTCTCAAAAAAAAGAAATACAAATTATGACCCCACTCATGTAATAAGAAGTCAAAATATTTTAGTTGGCTCTAATTCCCTTTGAGCAAGGTTTCATCATTTGTTATCTTTTCTTTGAGGCATTCATCCTATAGTTCTCTCTTTAACATTCTTCTGCACTTTATGCAGGTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAGGTCTGGCATTCTCTACTATTGAAGAAGCTACTATGGATTATGTTTTCTGATCTCTCCTTATGTTAGGGTGTGAAAAAAAAATTGTTTTTACTGTTACATTTTATTAATTAAGTAAATCTACCTTCAATGGTCAAGTCTACCTTTTTGACCCTTATCAATTGGATAAATAATAGTGTGTCAGCCTGTTTAAAAACAGATGTCACTACGTGTCCTTTCTAGAGCACTAACTAAGCACTAGCAGGATTGTAACATGATACGAGTACATCTCCATGAATGTTCAAATTTTAGGACATTATATCATATATATGAGGACAGTCAAGTGGCTGAACGCCCCTCTCCTCGTTCCGCCCTTCCTATTGGGATAGCAGCCTTGGGGCTTTGCCTGCCCTTTCTAATAAAAAATTCAGGCTCGGCCCGGGAAAGCGCTGGCAACAACTGAAAGGAAGGGGTCCATGTAGCTGCTGTGTCCGCCCCTTTACTGTCAGGAATGGCTCGTCAGTCATGTCAAAACAAATTTGAAAATAGGAATTATATGGACCTGTAATGAGCTTGCCATAACAAACTAGAAAAGAATCTAATTCCATTCAACCTATGCCTACTGGGCACATTGAATAGCTAATGGACCTAAAAGAGCATGATGAATTTGAATCTGTTAATGCAACAGAGGAAAACAAAAAATATCCATCTTTGAAATAATGGTAGATATTGAAGAAAATACATCTGTCAAGAGAATTCTCACTTTTCTACTATTCCATCTTTTGCAGTGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTGGTACGTGTACTTGCATACAAAGTCATAAATGGAGTGAGCTACTTGTTCTGGTTGATTCATCTTAACCTGCATTTTGCAGGTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCTGTAAGTGACTTAAAGTTATAGCATCCTCTTTTCTTCCGTTGAGAAAATTCTCCTTCACAGCCTTCATAACAAATTATAAACGCTTTTCGTTGTTACCCAAAATCTTTAATCTTATATTGAATATATGTAAAAAGTCTTCTGTGGTGAGTTTCGACTTAGAACAGTCTTTTTCTTCATCGTTATCTAAATATTTCCATCGTTTTTCTTTCAAGTAGCAAATGAAAAGTTAATGGAAAATTAAAATTACCATATGAGTATATCCTTGAGAGATGTAAAATTACCATATGAGTACAAAGAATTTTCCTTAGTTTTACTTAAAAATTCTTAAGTTGACGATTATATTGGTAGCAATGCCAGATCCCTGAGAAATGTACAACTGTGTTGGAAATAATTCAAGGAGGATTTTGAAACATGAAGGAAAACTTGGCTACAACTTCTAAGTACCCCACTTGTACCACCTCCATTTCAGGTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAGAAGCAAGAGGATCGTCCATCTACATCTTCCCAATTCTAATCTAATCAGGTGTTAAAAGAGTCTCCTCGGTAGGAAA</genome_strand>
        <mrna_strand>AATTAAAGCATCAGCCTTTCGTACATATCACACACCTCTTAACAAACAG........................................................................................GTTGACTATGTCAATTCTATGAGAGCTGCACGAGAATTCAGTTCAAGGGTTTCTGATTCTCTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTCTTCCCGTATGCAGTGTTTTATATGTTCTTTGAGCAATATTTAAGCATATGGAGGACAGCCCTAATTAACTTAGCGATTGCTATTG.........................................................................................................................................................................................................GTGCCGTATTTATTGTATGCTTAGTTATCACTTGTAG............................................................................................................................TTTTTGGACTTCAGCAATTATCTTGCTCGTGCTGACCATGATTGTTCTGGATCTTATG.........................................................................................GGAGTAATGGCAATTCTAAAAATCCAGCTCAATGCTGTATCAGTTGTTAACCTTGTGATGGCCGTTGGTATTGCTGTTGAATTCTGTGTCCATATAACACATGCCTTCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTG...............................................................................GTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAGAAGCNAGAGGATCGTCCATCTACATCTTCCCAATTCTAATCTAATCAGGTGGTAAAAGAGTCTCCTCGGTAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560522" ref_strand="+" ref_description="SGN-E560522 [20190]">
      <seq>aacaggttgactatgtcaattctatgagggctgcacgagaattcagttcaaggggtttctgattctctaaagatggaggtcttcccgtatgcagtgttttatatgttctttgagcaatatttaagcatatggaggacagccctaattaacttagcgattgctattggtgctgtatttattgtatgcttaattatcacttgtagtttttggacttcagcaattatcttgcttgtgctgaccatgattgttctggatcttatgggagtaatggcaattctaaatatccagctcaatgctgtatcagttgttaaccttgtgatggccgttggtattgctgttgaattctgtgtccatataacacatgccttcttggttagcagtggagatagaaaccaacgcatgaaggaggcgctgactactatgggcgcttctgtattcagtggtatcacgcttacaaagcttgtcggtgtcattgttctttgtttttcaaggacagaagtttttgtggtttactactttcaaatgtacctggctttggttctccttggttttctacacgggcttatatttttacctgtactattaagcatttttggtccgncatcaaggatgtgtgcttgtagagaagcaagaggatcgggcatctacatcttcccaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="17222" stop="12935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17012" g_stop="17008" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17007" i_stop="16920" i_length="88">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16919" g_stop="16854" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="72" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16853" i_stop="16025" i_length="829">
            <donor d_prob="0.940" d_score="0.94"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16024" g_stop="15931" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="166" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15930" i_stop="15730" i_length="201">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.364" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15729" g_stop="15693" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="203" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15692" i_stop="15569" i_length="124">
            <donor d_prob="0.562" d_score="0.00"/>
            <acceptor a_prob="0.701" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15568" g_stop="15511" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="261" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15510" i_stop="15422" i_length="89">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15421" g_stop="15311" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="372" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15310" i_stop="14835" i_length="476">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14834" g_stop="14767" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="440" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14766" i_stop="14003" i_length="764">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14002" g_stop="13936" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="507" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="13935" i_stop="13857" i_length="79">
            <donor d_prob="0.674" d_score="0.98"/>
            <acceptor a_prob="0.405" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="13856" g_stop="13788" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="576" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="13787" i_stop="13319" i_length="469">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="0.627" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="13318" g_stop="13235" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="661" r_length="85" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E560522" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17012" e_stop="17008"/>
          <exon e_start="16919" e_stop="16854"/>
          <exon e_start="16024" e_stop="15931"/>
          <exon e_start="15729" e_stop="15693"/>
          <exon e_start="15568" e_stop="15511"/>
          <exon e_start="15421" e_stop="15311"/>
          <exon e_start="14834" e_stop="14767"/>
          <exon e_start="14002" e_stop="13936"/>
          <exon e_start="13856" e_stop="13788"/>
          <exon e_start="13318" e_stop="13235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGGTATATAATCATTCACAACCCTTTACCTTATAGTTCACTAAACTTTGTCTAGAGGTCCATGTGTTTGATCTTAACCCATCTTCTTCAGGTTGACTATGTCAATTCTATGAGAGCTGCACGAGAATTCAGTTCAA-GGGTTTCTGATTCTCTAAAGGTAATTTCTGAATGCAGCATAATGAAGTATTGCTGTCACTCTCAGGAGCTTAACTGTTTGGCCTGTTTTTGTTGTCTCTACTGATTTTTTTTTAATGACCACTACTGAGATTCTCTCTTTTCTTTTAATTTGTTCATCTATCAGTTATACATTCTGATGATAAACTAATGGTACTGTCCGCAAGCAAGTTCTGATTTTCCATTATAGCTTGCAGAACATTGTCATTAGTGTATTCAACTCCTTTATTTGTGTACTGATAATTACAGTTTATTTAAGAATATTAAGACGTTTATATCAAGATTGTTGCTGCGTCATGAATGTGAAATATGGTAAATTTGATAAGTATAGCAGCAATAAGGTCTTCTATATAGAGTACTTTTACTTCCTTTTATGCCAAATCTGACTGTACCAGAACAGAAGGAAGATAATCTGGAGTAGTGATTATCTGATCCAAAAACCAAAAGGCATGTCATAGTTGTAATATTAAGGTTTTAGAAAGTTTAGGTGAAAAAAAAATCATTGTGGTACTTTCGAGAGATTCTGGAGGTTAGATATTTGTATATCGTGTCTTGTAGATTTTATCTAAGTAGAAAATACTCATCTGTACTTATAAGATTCCAGGTAAAAAGGAAGAACGAATTAGGATAGTGGCATAAATGGAAATTGTGCCCAAGTGCAAGAGAGTTCTACACCCTACAATTTATACCCCATAATAAGTTGCTTCTGATCTGTGATTTGTCCCATTATCTTCTTCTGGCAATTACACACTTGGCATGCATTTCCATAAGTTCTGTGTATTAGCCACGACTTACCTCTTTCGTTTCTGCAGATGGAGGTCTTCCCGTATGCAGTGTTTTATATGTTCTTTGAGCAATATTTAAGCATATGGAGGACAGCCCTAATTAACTTAGCGATTGCTATTGGTCAGTGTCATCTCTCTGTACTTAATTTAATTCACCTTTCAGCTGATGCATGACATATCTTTAATTATGTGGATATTTTGAAAAAAAAAATTCTCTTTTTGTCTGCTGGTTATCATTTCTATTGGAAGCATTGGGTAGTTTTAAAACGACTAAGACCATTGAGAGACATTAACTATGTATTTCTTTTTTCATTTTCAACAGGTGCCGTATTTATTGTATGCTTAGTTATCACTTGTAGGTTAGTATATTATCTCTTGGAATGCTATCCATTCCTATCCTTTCTTGCTTTCTTGAACAAAACACATTTATTTTTTGTATCTATAAGATATAACTCTGTTTTGTTTGACCTTTGCTACATCTAGTTTTTGGACTTCAGCAATTATCTTGCTCGTGCTGACCATGATTGTTCTGGATCTTATGGTATGTTTTCCTCTTTGAACAATTGTTTGAGTTCATATATTACACCTGATTTTCTCTCTCTAGCAGTGACATCTTACATCATTTTGCAGGGAGTAATGGCAATTCTAAAAATCCAGCTCAATGCTGTATCAGTTGTTAACCTTGTGATGGCCGTTGGTATTGCTGTTGAATTCTGTGTCCATATAACACATGCCTTCTTGGTTAGTCTTCTATCAGAGTGATCTATCTGGTCTACTTTTCTGTTTAAAATAATGAGAGAATGAAGATCAACTTGAGTAGGTTAAGTAAGAGAATACTGTATATTAAACAAATATAATTGTCTGCAAATAATTGAGAAGATAATCCTTGTCTGAGTGAGTAGAATGAATGACTAATAGGTTCAAGTAAATCTTTATGCCCCTGAAGTTAACTGTTTGAATGATATCTGTCATTATCAGCAATGAACCATCTGCAGCGAATTACACATGTGCATCAAACCTTAGCTTGGGTGTCAATTATGACCCCACTCTTTCTCAAAAAAAAGAAATACAAATTATGACCCCACTCATGTAATAAGAAGTCAAAATATTTTAGTTGGCTCTAATTCCCTTTGAGCAAGGTTTCATCATTTGTTATCTTTTCTTTGAGGCATTCATCCTATAGTTCTCTCTTTAACATTCTTCTGCACTTTATGCAGGTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAGGTCTGGCATTCTCTACTATTGAAGAAGCTACTATGGATTATGTTTTCTGATCTCTCCTTATGTTAGGGTGTGAAAAAAAAATTGTTTTTACTGTTACATTTTATTAATTAAGTAAATCTACCTTCAATGGTCAAGTCTACCTTTTTGACCCTTATCAATTGGATAAATAATAGTGTGTCAGCCTGTTTAAAAACAGATGTCACTACGTGTCCTTTCTAGAGCACTAACTAAGCACTAGCAGGATTGTAACATGATACGAGTACATCTCCATGAATGTTCAAATTTTAGGACATTATATCATATATATGAGGACAGTCAAGTGGCTGAACGCCCCTCTCCTCGTTCCGCCCTTCCTATTGGGATAGCAGCCTTGGGGCTTTGCCTGCCCTTTCTAATAAAAAATTCAGGCTCGGCCCGGGAAAGCGCTGGCAACAACTGAAAGGAAGGGGTCCATGTAGCTGCTGTGTCCGCCCCTTTACTGTCAGGAATGGCTCGTCAGTCATGTCAAAACAAATTTGAAAATAGGAATTATATGGACCTGTAATGAGCTTGCCATAACAAACTAGAAAAGAATCTAATTCCATTCAACCTATGCCTACTGGGCACATTGAATAGCTAATGGACCTAAAAGAGCATGATGAATTTGAATCTGTTAATGCAACAGAGGAAAACAAAAAATATCCATCTTTGAAATAATGGTAGATATTGAAGAAAATACATCTGTCAAGAGAATTCTCACTTTTCTACTATTCCATCTTTTGCAGTGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTGGTACGTGTACTTGCATACAAAGTCATAAATGGAGTGAGCTACTTGTTCTGGTTGATTCATCTTAACCTGCATTTTGCAGGTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCTGTAAGTGACTTAAAGTTATAGCATCCTCTTTTCTTCCGTTGAGAAAATTCTCCTTCACAGCCTTCATAACAAATTATAAACGCTTTTCGTTGTTACCCAAAATCTTTAATCTTATATTGAATATATGTAAAAAGTCTTCTGTGGTGAGTTTCGACTTAGAACAGTCTTTTTCTTCATCGTTATCTAAATATTTCCATCGTTTTTCTTTCAAGTAGCAAATGAAAAGTTAATGGAAAATTAAAATTACCATATGAGTATATCCTTGAGAGATGTAAAATTACCATATGAGTACAAAGAATTTTCCTTAGTTTTACTTAAAAATTCTTAAGTTGACGATTATATTGGTAGCAATGCCAGATCCCTGAGAAATGTACAACTGTGTTGGAAATAATTCAAGGAGGATTTTGAAACATGAAGGAAAACTTGGCTACAACTTCTAAGTACCCCACTTGTACCACCTCCATTTCAGGTACTATTAAGCATTTTTGGTCCGCCATCAA-GATGTGTGCTTGTAGAGAAGCAAGAGGATCGTCCATCTACATCTTCCCAATTC</genome_strand>
        <mrna_strand>AACAG........................................................................................GTTGACTATGTCAATTCTATGAGGGCTGCACGAGAATTCAGTTCAAGGGGTTTCTGATTCTCTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTCTTCCCGTATGCAGTGTTTTATATGTTCTTTGAGCAATATTTAAGCATATGGAGGACAGCCCTAATTAACTTAGCGATTGCTATTG.........................................................................................................................................................................................................GTGCTGTATTTATTGTATGCTTAATTATCACTTGTAG............................................................................................................................TTTTTGGACTTCAGCAATTATCTTGCTTGTGCTGACCATGATTGTTCTGGATCTTATG.........................................................................................GGAGTAATGGCAATTCTAAATATCCAGCTCAATGCTGTATCAGTTGTTAACCTTGTGATGGCCGTTGGTATTGCTGTTGAATTCTGTGTCCATATAACACATGCCTTCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCGCTGACTACTATGGGCGCTTCTGTATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTTTCAAGGACAGAAGTTTTTGTG...............................................................................GTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTCCTTGGTTTTCTACACGGGCTTATATTTTTACCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTATTAAGCATTTTTGGTCCGNCATCAAGGATGTGTGCTTGTAGAGAAGCAAGAGGATCGGGCATCTACATCTTCCCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296470" ref_strand="-" ref_description="SGN-E296470 [cLET-19-L23](-)">
      <seq>attaaagcatcagcctttcgtacatatcacacacctcttaacaaacaggttgactatgtcaattctatgagagctgcacgagaattcagttcaagggtttctgattctctaaagatggaggtcttcccgtatgcagtgttttatatgttctttgagcaatatttaagcatatggaggacagccctaattaacttagcgattgctattggtgccgtatttattgtatgcttagttatcacttgtagtttttggacttcagcaattatcttgctcgtgctgaccatgattgttctggatcttatgggagtaatggcaattctaaaaatccagctcaatgctgtatcagttgttaaccttgtgatggccgttggtattgctgttgaattctgtgtccatataacacatgccttcttggttagcagtggagatagaaaccaacgcatgaaggaggcactgactactatgggcgcttctgtattcagtggtatcacgcttacaaagcttgtcggtgtcattgttctttgtttctcaaggacagaagtttttgtggtttactactttcaaatgtacctggctttggttcttcttggttttctacatgggctcatatttttacctggactattaagcatttttggtccgccatcaagatgtgtgcttgtagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="17355" stop="12971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17055" g_stop="17008" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17007" i_stop="16920" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16919" g_stop="16854" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="114" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16853" i_stop="16025" i_length="829">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16024" g_stop="15931" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="208" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15930" i_stop="15730" i_length="201">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.364" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15729" g_stop="15693" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="245" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15692" i_stop="15569" i_length="124">
            <donor d_prob="0.562" d_score="0.00"/>
            <acceptor a_prob="0.701" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15568" g_stop="15511" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="303" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15510" i_stop="15422" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15421" g_stop="15311" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="414" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15310" i_stop="14835" i_length="476">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14834" g_stop="14767" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="482" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14766" i_stop="14003" i_length="764">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14002" g_stop="13936" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="549" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="13935" i_stop="13857" i_length="79">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.405" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="13856" g_stop="13788" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="618" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="13787" i_stop="13319" i_length="469">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.627" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="13318" g_stop="13271" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="666" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E296470" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296470" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17055" e_stop="17008"/>
          <exon e_start="16919" e_stop="16854"/>
          <exon e_start="16024" e_stop="15931"/>
          <exon e_start="15729" e_stop="15693"/>
          <exon e_start="15568" e_stop="15511"/>
          <exon e_start="15421" e_stop="15311"/>
          <exon e_start="14834" e_stop="14767"/>
          <exon e_start="14002" e_stop="13936"/>
          <exon e_start="13856" e_stop="13788"/>
          <exon e_start="13318" e_stop="13271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAGCATCAGCCTTTCGTACATATCACACACCTCTTAACAAACAGGTATATAATCATTCACAACCCTTTACCTTATAGTTCACTAAACTTTGTCTAGAGGTCCATGTGTTTGATCTTAACCCATCTTCTTCAGGTTGACTATGTCAATTCTATGAGAGCTGCACGAGAATTCAGTTCAAGGGTTTCTGATTCTCTAAAGGTAATTTCTGAATGCAGCATAATGAAGTATTGCTGTCACTCTCAGGAGCTTAACTGTTTGGCCTGTTTTTGTTGTCTCTACTGATTTTTTTTTAATGACCACTACTGAGATTCTCTCTTTTCTTTTAATTTGTTCATCTATCAGTTATACATTCTGATGATAAACTAATGGTACTGTCCGCAAGCAAGTTCTGATTTTCCATTATAGCTTGCAGAACATTGTCATTAGTGTATTCAACTCCTTTATTTGTGTACTGATAATTACAGTTTATTTAAGAATATTAAGACGTTTATATCAAGATTGTTGCTGCGTCATGAATGTGAAATATGGTAAATTTGATAAGTATAGCAGCAATAAGGTCTTCTATATAGAGTACTTTTACTTCCTTTTATGCCAAATCTGACTGTACCAGAACAGAAGGAAGATAATCTGGAGTAGTGATTATCTGATCCAAAAACCAAAAGGCATGTCATAGTTGTAATATTAAGGTTTTAGAAAGTTTAGGTGAAAAAAAAATCATTGTGGTACTTTCGAGAGATTCTGGAGGTTAGATATTTGTATATCGTGTCTTGTAGATTTTATCTAAGTAGAAAATACTCATCTGTACTTATAAGATTCCAGGTAAAAAGGAAGAACGAATTAGGATAGTGGCATAAATGGAAATTGTGCCCAAGTGCAAGAGAGTTCTACACCCTACAATTTATACCCCATAATAAGTTGCTTCTGATCTGTGATTTGTCCCATTATCTTCTTCTGGCAATTACACACTTGGCATGCATTTCCATAAGTTCTGTGTATTAGCCACGACTTACCTCTTTCGTTTCTGCAGATGGAGGTCTTCCCGTATGCAGTGTTTTATATGTTCTTTGAGCAATATTTAAGCATATGGAGGACAGCCCTAATTAACTTAGCGATTGCTATTGGTCAGTGTCATCTCTCTGTACTTAATTTAATTCACCTTTCAGCTGATGCATGACATATCTTTAATTATGTGGATATTTTGAAAAAAAAAATTCTCTTTTTGTCTGCTGGTTATCATTTCTATTGGAAGCATTGGGTAGTTTTAAAACGACTAAGACCATTGAGAGACATTAACTATGTATTTCTTTTTTCATTTTCAACAGGTGCCGTATTTATTGTATGCTTAGTTATCACTTGTAGGTTAGTATATTATCTCTTGGAATGCTATCCATTCCTATCCTTTCTTGCTTTCTTGAACAAAACACATTTATTTTTTGTATCTATAAGATATAACTCTGTTTTGTTTGACCTTTGCTACATCTAGTTTTTGGACTTCAGCAATTATCTTGCTCGTGCTGACCATGATTGTTCTGGATCTTATGGTATGTTTTCCTCTTTGAACAATTGTTTGAGTTCATATATTACACCTGATTTTCTCTCTCTAGCAGTGACATCTTACATCATTTTGCAGGGAGTAATGGCAATTCTAAAAATCCAGCTCAATGCTGTATCAGTTGTTAACCTTGTGATGGCCGTTGGTATTGCTGTTGAATTCTGTGTCCATATAACACATGCCTTCTTGGTTAGTCTTCTATCAGAGTGATCTATCTGGTCTACTTTTCTGTTTAAAATAATGAGAGAATGAAGATCAACTTGAGTAGGTTAAGTAAGAGAATACTGTATATTAAACAAATATAATTGTCTGCAAATAATTGAGAAGATAATCCTTGTCTGAGTGAGTAGAATGAATGACTAATAGGTTCAAGTAAATCTTTATGCCCCTGAAGTTAACTGTTTGAATGATATCTGTCATTATCAGCAATGAACCATCTGCAGCGAATTACACATGTGCATCAAACCTTAGCTTGGGTGTCAATTATGACCCCACTCTTTCTCAAAAAAAAGAAATACAAATTATGACCCCACTCATGTAATAAGAAGTCAAAATATTTTAGTTGGCTCTAATTCCCTTTGAGCAAGGTTTCATCATTTGTTATCTTTTCTTTGAGGCATTCATCCTATAGTTCTCTCTTTAACATTCTTCTGCACTTTATGCAGGTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAGGTCTGGCATTCTCTACTATTGAAGAAGCTACTATGGATTATGTTTTCTGATCTCTCCTTATGTTAGGGTGTGAAAAAAAAATTGTTTTTACTGTTACATTTTATTAATTAAGTAAATCTACCTTCAATGGTCAAGTCTACCTTTTTGACCCTTATCAATTGGATAAATAATAGTGTGTCAGCCTGTTTAAAAACAGATGTCACTACGTGTCCTTTCTAGAGCACTAACTAAGCACTAGCAGGATTGTAACATGATACGAGTACATCTCCATGAATGTTCAAATTTTAGGACATTATATCATATATATGAGGACAGTCAAGTGGCTGAACGCCCCTCTCCTCGTTCCGCCCTTCCTATTGGGATAGCAGCCTTGGGGCTTTGCCTGCCCTTTCTAATAAAAAATTCAGGCTCGGCCCGGGAAAGCGCTGGCAACAACTGAAAGGAAGGGGTCCATGTAGCTGCTGTGTCCGCCCCTTTACTGTCAGGAATGGCTCGTCAGTCATGTCAAAACAAATTTGAAAATAGGAATTATATGGACCTGTAATGAGCTTGCCATAACAAACTAGAAAAGAATCTAATTCCATTCAACCTATGCCTACTGGGCACATTGAATAGCTAATGGACCTAAAAGAGCATGATGAATTTGAATCTGTTAATGCAACAGAGGAAAACAAAAAATATCCATCTTTGAAATAATGGTAGATATTGAAGAAAATACATCTGTCAAGAGAATTCTCACTTTTCTACTATTCCATCTTTTGCAGTGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTGGTACGTGTACTTGCATACAAAGTCATAAATGGAGTGAGCTACTTGTTCTGGTTGATTCATCTTAACCTGCATTTTGCAGGTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCTGTAAGTGACTTAAAGTTATAGCATCCTCTTTTCTTCCGTTGAGAAAATTCTCCTTCACAGCCTTCATAACAAATTATAAACGCTTTTCGTTGTTACCCAAAATCTTTAATCTTATATTGAATATATGTAAAAAGTCTTCTGTGGTGAGTTTCGACTTAGAACAGTCTTTTTCTTCATCGTTATCTAAATATTTCCATCGTTTTTCTTTCAAGTAGCAAATGAAAAGTTAATGGAAAATTAAAATTACCATATGAGTATATCCTTGAGAGATGTAAAATTACCATATGAGTACAAAGAATTTTCCTTAGTTTTACTTAAAAATTCTTAAGTTGACGATTATATTGGTAGCAATGCCAGATCCCTGAGAAATGTACAACTGTGTTGGAAATAATTCAAGGAGGATTTTGAAACATGAAGGAAAACTTGGCTACAACTTCTAAGTACCCCACTTGTACCACCTCCATTTCAGGTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAG</genome_strand>
        <mrna_strand>ATTAAAGCATCAGCCTTTCGTACATATCACACACCTCTTAACAAACAG........................................................................................GTTGACTATGTCAATTCTATGAGAGCTGCACGAGAATTCAGTTCAAGGGTTTCTGATTCTCTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTCTTCCCGTATGCAGTGTTTTATATGTTCTTTGAGCAATATTTAAGCATATGGAGGACAGCCCTAATTAACTTAGCGATTGCTATTG.........................................................................................................................................................................................................GTGCCGTATTTATTGTATGCTTAGTTATCACTTGTAG............................................................................................................................TTTTTGGACTTCAGCAATTATCTTGCTCGTGCTGACCATGATTGTTCTGGATCTTATG.........................................................................................GGAGTAATGGCAATTCTAAAAATCCAGCTCAATGCTGTATCAGTTGTTAACCTTGTGATGGCCGTTGGTATTGCTGTTGAATTCTGTGTCCATATAACACATGCCTTCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTG...............................................................................GTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296329" ref_strand="+" ref_description="SGN-E296329 [cLET-19-L23]">
      <seq>attaaagcatcagcctttcgtacatatcacacacctcttaacaaacaggttgactatgtcaattctatgagagctgcacgagaattcagttcaagggtttctgattctctaaagatggaggtcttcccgtatgcagtgttttatatgttctttgagcaatatttaagcatatggaggacagccctaattaacttagcgattgctattggtgccgtatttattgtatgcttagttatcacttgtagtttttggacttcagcaattatcttgctcgtgctgaccatgattgttctggatcttatgggagtaatggcaattctaaaaatccagctcaatgctgtatcagttgttaaccttgtgatggccgttggtattgctgttgaattctgtgtccatataacacatgccttcttggttagcagtggagatagaaaccaacgcatgaaggaggcactgactactatgggcgcttctgtattcagtggtatcacgcttacaaagcttgtcggtgtcattgttctttgtttctcaaggacagaagtttttgtggtttactactttcaaatgtacctggctttggttcttcttggttttctacatgggctcatatttttacctggactattaagcatttttggtccgccatcaagatgtgtgcttgtagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="17355" stop="12971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17055" g_stop="17008" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17007" i_stop="16920" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16919" g_stop="16854" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="114" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16853" i_stop="16025" i_length="829">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16024" g_stop="15931" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="208" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15930" i_stop="15730" i_length="201">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.364" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15729" g_stop="15693" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="245" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15692" i_stop="15569" i_length="124">
            <donor d_prob="0.562" d_score="0.00"/>
            <acceptor a_prob="0.701" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15568" g_stop="15511" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="303" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15510" i_stop="15422" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15421" g_stop="15311" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="414" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15310" i_stop="14835" i_length="476">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14834" g_stop="14767" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="482" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14766" i_stop="14003" i_length="764">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14002" g_stop="13936" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="549" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="13935" i_stop="13857" i_length="79">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.405" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="13856" g_stop="13788" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="618" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="13787" i_stop="13319" i_length="469">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.627" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="13318" g_stop="13271" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="666" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E296329" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17055" e_stop="17008"/>
          <exon e_start="16919" e_stop="16854"/>
          <exon e_start="16024" e_stop="15931"/>
          <exon e_start="15729" e_stop="15693"/>
          <exon e_start="15568" e_stop="15511"/>
          <exon e_start="15421" e_stop="15311"/>
          <exon e_start="14834" e_stop="14767"/>
          <exon e_start="14002" e_stop="13936"/>
          <exon e_start="13856" e_stop="13788"/>
          <exon e_start="13318" e_stop="13271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAGCATCAGCCTTTCGTACATATCACACACCTCTTAACAAACAGGTATATAATCATTCACAACCCTTTACCTTATAGTTCACTAAACTTTGTCTAGAGGTCCATGTGTTTGATCTTAACCCATCTTCTTCAGGTTGACTATGTCAATTCTATGAGAGCTGCACGAGAATTCAGTTCAAGGGTTTCTGATTCTCTAAAGGTAATTTCTGAATGCAGCATAATGAAGTATTGCTGTCACTCTCAGGAGCTTAACTGTTTGGCCTGTTTTTGTTGTCTCTACTGATTTTTTTTTAATGACCACTACTGAGATTCTCTCTTTTCTTTTAATTTGTTCATCTATCAGTTATACATTCTGATGATAAACTAATGGTACTGTCCGCAAGCAAGTTCTGATTTTCCATTATAGCTTGCAGAACATTGTCATTAGTGTATTCAACTCCTTTATTTGTGTACTGATAATTACAGTTTATTTAAGAATATTAAGACGTTTATATCAAGATTGTTGCTGCGTCATGAATGTGAAATATGGTAAATTTGATAAGTATAGCAGCAATAAGGTCTTCTATATAGAGTACTTTTACTTCCTTTTATGCCAAATCTGACTGTACCAGAACAGAAGGAAGATAATCTGGAGTAGTGATTATCTGATCCAAAAACCAAAAGGCATGTCATAGTTGTAATATTAAGGTTTTAGAAAGTTTAGGTGAAAAAAAAATCATTGTGGTACTTTCGAGAGATTCTGGAGGTTAGATATTTGTATATCGTGTCTTGTAGATTTTATCTAAGTAGAAAATACTCATCTGTACTTATAAGATTCCAGGTAAAAAGGAAGAACGAATTAGGATAGTGGCATAAATGGAAATTGTGCCCAAGTGCAAGAGAGTTCTACACCCTACAATTTATACCCCATAATAAGTTGCTTCTGATCTGTGATTTGTCCCATTATCTTCTTCTGGCAATTACACACTTGGCATGCATTTCCATAAGTTCTGTGTATTAGCCACGACTTACCTCTTTCGTTTCTGCAGATGGAGGTCTTCCCGTATGCAGTGTTTTATATGTTCTTTGAGCAATATTTAAGCATATGGAGGACAGCCCTAATTAACTTAGCGATTGCTATTGGTCAGTGTCATCTCTCTGTACTTAATTTAATTCACCTTTCAGCTGATGCATGACATATCTTTAATTATGTGGATATTTTGAAAAAAAAAATTCTCTTTTTGTCTGCTGGTTATCATTTCTATTGGAAGCATTGGGTAGTTTTAAAACGACTAAGACCATTGAGAGACATTAACTATGTATTTCTTTTTTCATTTTCAACAGGTGCCGTATTTATTGTATGCTTAGTTATCACTTGTAGGTTAGTATATTATCTCTTGGAATGCTATCCATTCCTATCCTTTCTTGCTTTCTTGAACAAAACACATTTATTTTTTGTATCTATAAGATATAACTCTGTTTTGTTTGACCTTTGCTACATCTAGTTTTTGGACTTCAGCAATTATCTTGCTCGTGCTGACCATGATTGTTCTGGATCTTATGGTATGTTTTCCTCTTTGAACAATTGTTTGAGTTCATATATTACACCTGATTTTCTCTCTCTAGCAGTGACATCTTACATCATTTTGCAGGGAGTAATGGCAATTCTAAAAATCCAGCTCAATGCTGTATCAGTTGTTAACCTTGTGATGGCCGTTGGTATTGCTGTTGAATTCTGTGTCCATATAACACATGCCTTCTTGGTTAGTCTTCTATCAGAGTGATCTATCTGGTCTACTTTTCTGTTTAAAATAATGAGAGAATGAAGATCAACTTGAGTAGGTTAAGTAAGAGAATACTGTATATTAAACAAATATAATTGTCTGCAAATAATTGAGAAGATAATCCTTGTCTGAGTGAGTAGAATGAATGACTAATAGGTTCAAGTAAATCTTTATGCCCCTGAAGTTAACTGTTTGAATGATATCTGTCATTATCAGCAATGAACCATCTGCAGCGAATTACACATGTGCATCAAACCTTAGCTTGGGTGTCAATTATGACCCCACTCTTTCTCAAAAAAAAGAAATACAAATTATGACCCCACTCATGTAATAAGAAGTCAAAATATTTTAGTTGGCTCTAATTCCCTTTGAGCAAGGTTTCATCATTTGTTATCTTTTCTTTGAGGCATTCATCCTATAGTTCTCTCTTTAACATTCTTCTGCACTTTATGCAGGTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAGGTCTGGCATTCTCTACTATTGAAGAAGCTACTATGGATTATGTTTTCTGATCTCTCCTTATGTTAGGGTGTGAAAAAAAAATTGTTTTTACTGTTACATTTTATTAATTAAGTAAATCTACCTTCAATGGTCAAGTCTACCTTTTTGACCCTTATCAATTGGATAAATAATAGTGTGTCAGCCTGTTTAAAAACAGATGTCACTACGTGTCCTTTCTAGAGCACTAACTAAGCACTAGCAGGATTGTAACATGATACGAGTACATCTCCATGAATGTTCAAATTTTAGGACATTATATCATATATATGAGGACAGTCAAGTGGCTGAACGCCCCTCTCCTCGTTCCGCCCTTCCTATTGGGATAGCAGCCTTGGGGCTTTGCCTGCCCTTTCTAATAAAAAATTCAGGCTCGGCCCGGGAAAGCGCTGGCAACAACTGAAAGGAAGGGGTCCATGTAGCTGCTGTGTCCGCCCCTTTACTGTCAGGAATGGCTCGTCAGTCATGTCAAAACAAATTTGAAAATAGGAATTATATGGACCTGTAATGAGCTTGCCATAACAAACTAGAAAAGAATCTAATTCCATTCAACCTATGCCTACTGGGCACATTGAATAGCTAATGGACCTAAAAGAGCATGATGAATTTGAATCTGTTAATGCAACAGAGGAAAACAAAAAATATCCATCTTTGAAATAATGGTAGATATTGAAGAAAATACATCTGTCAAGAGAATTCTCACTTTTCTACTATTCCATCTTTTGCAGTGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTGGTACGTGTACTTGCATACAAAGTCATAAATGGAGTGAGCTACTTGTTCTGGTTGATTCATCTTAACCTGCATTTTGCAGGTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCTGTAAGTGACTTAAAGTTATAGCATCCTCTTTTCTTCCGTTGAGAAAATTCTCCTTCACAGCCTTCATAACAAATTATAAACGCTTTTCGTTGTTACCCAAAATCTTTAATCTTATATTGAATATATGTAAAAAGTCTTCTGTGGTGAGTTTCGACTTAGAACAGTCTTTTTCTTCATCGTTATCTAAATATTTCCATCGTTTTTCTTTCAAGTAGCAAATGAAAAGTTAATGGAAAATTAAAATTACCATATGAGTATATCCTTGAGAGATGTAAAATTACCATATGAGTACAAAGAATTTTCCTTAGTTTTACTTAAAAATTCTTAAGTTGACGATTATATTGGTAGCAATGCCAGATCCCTGAGAAATGTACAACTGTGTTGGAAATAATTCAAGGAGGATTTTGAAACATGAAGGAAAACTTGGCTACAACTTCTAAGTACCCCACTTGTACCACCTCCATTTCAGGTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAG</genome_strand>
        <mrna_strand>ATTAAAGCATCAGCCTTTCGTACATATCACACACCTCTTAACAAACAG........................................................................................GTTGACTATGTCAATTCTATGAGAGCTGCACGAGAATTCAGTTCAAGGGTTTCTGATTCTCTAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTCTTCCCGTATGCAGTGTTTTATATGTTCTTTGAGCAATATTTAAGCATATGGAGGACAGCCCTAATTAACTTAGCGATTGCTATTG.........................................................................................................................................................................................................GTGCCGTATTTATTGTATGCTTAGTTATCACTTGTAG............................................................................................................................TTTTTGGACTTCAGCAATTATCTTGCTCGTGCTGACCATGATTGTTCTGGATCTTATG.........................................................................................GGAGTAATGGCAATTCTAAAAATCCAGCTCAATGCTGTATCAGTTGTTAACCTTGTGATGGCCGTTGGTATTGCTGTTGAATTCTGTGTCCATATAACACATGCCTTCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTG...............................................................................GTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543778" ref_strand="+" ref_description="SGN-E543778 [TUS-65-M8]">
      <seq>cacatgccttcttggttagcagtggagatagaaaccaacgcatgaatgacgcactgactactatgggcgcttctgtattcagtggtatcacgcttacaaagcttgtcggtgtcattgttctttgtttctcaaggacagaagtttttgtggtttactactttcaaatgtacctgcgcttgggttcttcttggttttctacatgggctcatatttttacctgtaactattaagcattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="15135" stop="13001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14834" g_stop="14767" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="82" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14766" i_stop="14003" i_length="764">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14002" g_stop="13936" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="149" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13935" i_stop="13857" i_length="79">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.405" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13856" g_stop="13788" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="219" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13787" i_stop="13319" i_length="469">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="0.627" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13318" g_stop="13301" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="238" r_length="19" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E543778" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14834" e_stop="14767"/>
          <exon e_start="14002" e_stop="13936"/>
          <exon e_start="13856" e_stop="13788"/>
          <exon e_start="13318" e_stop="13301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAGGTCTGGCATTCTCTACTATTGAAGAAGCTACTATGGATTATGTTTTCTGATCTCTCCTTATGTTAGGGTGTGAAAAAAAAATTGTTTTTACTGTTACATTTTATTAATTAAGTAAATCTACCTTCAATGGTCAAGTCTACCTTTTTGACCCTTATCAATTGGATAAATAATAGTGTGTCAGCCTGTTTAAAAACAGATGTCACTACGTGTCCTTTCTAGAGCACTAACTAAGCACTAGCAGGATTGTAACATGATACGAGTACATCTCCATGAATGTTCAAATTTTAGGACATTATATCATATATATGAGGACAGTCAAGTGGCTGAACGCCCCTCTCCTCGTTCCGCCCTTCCTATTGGGATAGCAGCCTTGGGGCTTTGCCTGCCCTTTCTAATAAAAAATTCAGGCTCGGCCCGGGAAAGCGCTGGCAACAACTGAAAGGAAGGGGTCCATGTAGCTGCTGTGTCCGCCCCTTTACTGTCAGGAATGGCTCGTCAGTCATGTCAAAACAAATTTGAAAATAGGAATTATATGGACCTGTAATGAGCTTGCCATAACAAACTAGAAAAGAATCTAATTCCATTCAACCTATGCCTACTGGGCACATTGAATAGCTAATGGACCTAAAAGAGCATGATGAATTTGAATCTGTTAATGCAACAGAGGAAAACAAAAAATATCCATCTTTGAAATAATGGTAGATATTGAAGAAAATACATCTGTCAAGAGAATTCTCACTTTTCTACTATTCCATCTTTTGCAGTGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTGGTACGTGTACTTGCATACAAAGTCATAAATGGAGTGAGCTACTTGTTCTGGTTGATTCATCTTAACCTGCATTTTGCAGGTTTACTACTTTCAAATGTACCTG-GCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCTGTAAGTGACTTAAAGTTATAGCATCCTCTTTTCTTCCGTTGAGAAAATTCTCCTTCACAGCCTTCATAACAAATTATAAACGCTTTTCGTTGTTACCCAAAATCTTTAATCTTATATTGAATATATGTAAAAAGTCTTCTGTGGTGAGTTTCGACTTAGAACAGTCTTTTTCTTCATCGTTATCTAAATATTTCCATCGTTTTTCTTTCAAGTAGCAAATGAAAAGTTAATGGAAAATTAAAATTACCATATGAGTATATCCTTGAGAGATGTAAAATTACCATATGAGTACAAAGAATTTTCCTTAGTTTTACTTAAAAATTCTTAAGTTGACGATTATATTGGTAGCAATGCCAGATCCCTGAGAAATGTACAACTGTGTTGGAAATAATTCAAGGAGGATTTTGAAACATGAAGGAAAACTTGGCTACAACTTCTAAGTACCCCACTTGTACCACCTCCATTTCAGGT-ACTATTAAGCATTTTT</genome_strand>
        <mrna_strand>GTTAGCAGTGGAGATAGAAACCAACGCATGAATGACGCACTGACTACTATGGGCGCTTCTGTATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTG...............................................................................GTTTACTACTTTCAAATGTACCTGCGCTTGGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTATTAAGCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308670" ref_strand="+" ref_description="SGN-E308670 [cLEZ-13-E3]">
      <seq>aaggctgaaaatagcaatcggagcagcgaagggacttgatttcttacacaccatagaaaaacaagttatttaccgcgattttaaaacggccaatattttactggactcggactataatgcaaagctttcagattttggactagcaaaaatgggtccagtaaatggagactcacatgtgaccactaaaatagttggtacttatggctatgctgcacctgagtacatggccactggtcatgtatacgtaaagagcgacgtatacgggttcggagtcgtgttactcgaaatcctttcgggccgtagagtactggatcttaacaggcccaatggagaacataatttagtagattgggccaagcccatgttgcctgacaaaaagaagctaaggaaattaatggacccaagactggaggcccaatacccatcaaaggctgcatttcaaatagctgaaattatattaagatgccttgaacctgatccaaaaaatagaccttccatggaagaaatgttggaatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="42434" stop="40733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42134" g_stop="42026" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42025" i_stop="41924" i_length="102">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41923" g_stop="41800" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="233" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41799" i_stop="41320" i_length="480">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41319" g_stop="41033" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="520" r_length="287" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E308670" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42134" e_stop="42026"/>
          <exon e_start="41923" e_stop="41800"/>
          <exon e_start="41319" e_stop="41033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCTGAAAATAGCAATCGGAGCAGCGAAGGGACTTGATTTCTTACACACCATAGAAAAACAAGTTATTTACCGCGATTTTAAAACGGCCAATATTTTACTGGACTCGGTAATTCTTCTTTTTTTTTTTTTCTTAAAATAGAATATACGTTTTATGTTATTGACAATACTAGTTTTACTAATAAAATGTTGGTTTCAATTATTGTGACAGGACTATAATGCAAAGCTTTCAGATTTTGGACTAGCAAAAATGGGTCCAGTAAATGGAGACTCACATGTGACCACTAAAATAGTTGGTACTTATGGCTATGCTGCACCTGAGTACATGGCCACTGGTAAGTTATAATTGCTGACATTAAATTTTTATTTTATTTAAAAGAGATATGGAATTCGATTTCATATTTTAAATTCGAGTGATAGTTGGTGAAGGGAAGGAAGTTGACTTCTTGAAAAAGAATTATAATCTTGGCCCAAATTTGACCTTTTCCTTGCAGAAATGTGAACTCTTAAATGATTTATTTATTTATTAATATTAGCTGGCAAAGCTAAGTATAATTTGGTTCAACTAATTTTTTGTCTTTATGTTCCTTATATTTTAATTCTTAATTAATCATATAAAAATAATTGTTTCTTCATTGAAAAAGTCTTGATTCCTCCTACACCTTATGTTTGATTTATTTATGTAAATGTCCCTTTTCAAAAAGTCACTATTGATTCTTTCGAATTACACTAGACTTGGGGTCTAATGTTTGTTCATATACTGTTCTCTAATATTTGCGTTAAAACTGACAAAAATTTCACATCATTTTTGGCAGGTCATGTATACGTAAAGAGCGACGTATACGGGTTCGGAGTCGTGTTACTCGAAATCCTTTCGGGCCGTAGAGTACTGGATCTTAACAGGCCCAATGGAGAACATAATTTAGTAGATTGGGCCAAGCCCATGTTGCCTGACAAAAAGAAGCTAAGGAAATTAATGGACCCAAGACTGGAGGCCCAATACCCATCAAAGGCTGCATTTCAAATAGCTGAAATTATATTAAGATGCCTTGAACCTGATCCAAAAAATAGACCTTCCATGGAAGAAATTTTGGAATGTTTG</genome_strand>
        <mrna_strand>AAGGCTGAAAATAGCAATCGGAGCAGCGAAGGGACTTGATTTCTTACACACCATAGAAAAACAAGTTATTTACCGCGATTTTAAAACGGCCAATATTTTACTGGACTCG......................................................................................................GACTATAATGCAAAGCTTTCAGATTTTGGACTAGCAAAAATGGGTCCAGTAAATGGAGACTCACATGTGACCACTAAAATAGTTGGTACTTATGGCTATGCTGCACCTGAGTACATGGCCACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGTATACGTAAAGAGCGACGTATACGGGTTCGGAGTCGTGTTACTCGAAATCCTTTCGGGCCGTAGAGTACTGGATCTTAACAGGCCCAATGGAGAACATAATTTAGTAGATTGGGCCAAGCCCATGTTGCCTGACAAAAAGAAGCTAAGGAAATTAATGGACCCAAGACTGGAGGCCCAATACCCATCAAAGGCTGCATTTCAAATAGCTGAAATTATATTAAGATGCCTTGAACCTGATCCAAAAAATAGACCTTCCATGGAAGAAATGTTGGAATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214381" ref_strand="+" ref_description="SGN-E214381 [cLEC-77-C20]">
      <seq>attaatacatctccgggaagtaacacaaggagtgtggtggcgcagcctagcggagatggcggtgattcgaggaaaatggaagttccggctagcggaaaaataattacgccaaatttaaaaatgtttacgctagcggaattaaagagcgcgacgcgtaattttcggcccgatacggtgctaggtgagggaggatttggtacagtatttaaaggatgggtcgatgacaaaacatttgcaccttctagagttggagttggtatgcctgttgctgttaaaaaatcaaatgcagacagtgaacaaggtcttaaagaatggcaggctgaagtaaagtttttgggaaaacttagccacccaaatttagtaaaactaattggatattgttgggaagacaaaacatttcttctagtctatgagcacatgcaaaaagggagcttagaaagtcatcttttcagaacagaaggcgctgaagcattgtcatggggtacaaggctgaaaatagcaatcggagcagcgaagggacttgatttcttacacaccatagaaaaacaagttatttaccgcgattttaaaacggccaatattttactggactcggactataatgcaaagctttcagattttggactagcaaaaatgggtccagtaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="44595" stop="41568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44295" g_stop="43978" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43977" i_stop="42392" i_length="1586">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42391" g_stop="42256" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="454" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42255" i_stop="42166" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42165" g_stop="42026" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="594" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42025" i_stop="41924" i_length="102">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41923" g_stop="41868" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="650" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E214381" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44295" e_stop="43978"/>
          <exon e_start="42391" e_stop="42256"/>
          <exon e_start="42165" e_stop="42026"/>
          <exon e_start="41923" e_stop="41868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATACATCTCCGGGAAGTAACACAAGGAGTGTGGTGGCGCAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACGCCAAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATGCAGACAGTGAACAAGGTCTTAAAGAATGGCAGGTTAGTTATAATATATCCTTCCATGCTTTTTTTTAAAAATATAATATCTGACACGATTAATCTAAATTAGTCGGTTGAGTAAAGAGCTTTTCAACGATAATAATGATTGTATGTGTTTGGTGGTGGGTGCGAGTGGGAAAGAGGGGAGGTCATATATGATATGTGATGTCATTTTTATCAAAATATCAATATTATATACGATCGATTGAGTATATTTTATGTACGCCTCAAAATTCAAAACTTCAAGTCGAACGGATCGCATTATACTATGGGTGGTCCATGAATTTTTAATTCATGCAGAAGCAATAATGTTGATCAGAATATAATTTCTTTTATTTTCTCTCATTTTTTACGTTCATTAAAAGCCGGGAATATTAAATTGACAATTGAGTGCCATAAGACCAAACACTCGAGCTATTAATTAAACTTTATAACCAACAAAATAGACTCCTCCAAAAGTCAAACTTGTGCTTGATTTGAAAATTTAGTTAAATTTTATTATATTACTCCTATATTTTATTATAAAATATTGTATGTAGAACCGGAGCTAGCATATATATATATTTAGTTAAAATTCAATAATTTAATATAAAAAATATGTATAAATTATTAAATTAAAACTTAATAACATAAAAAAAATTATATTAAATATATAAACTTTGAGCTAAGTCGAATTATATATGATATAAAAGTATGAGTTTGGATAGTCTTCGATTTTTTTTTAATATTATCGATATAACTTTCTTCAGGTATTTAAAATGTTTTTCTTTTCTTTTCTTATAGCTAATATTTGACTAGTCACTTCTCTGAGGAGAAAAAAAAAGAGAGTCTAATAATTAGATCAATTAATTAAATGTTAGAAGATAATATAGTTTGACTCTATCAAAGTATCCACGTGGGTTTCCATACTACCTATTAATTTGTGGAAAATATTTTAATTAAATTTTAATTGTGAAAAATAAATATCACAACTCACACAAATATATTCCATTACTATAATATATTGCATGCAAGTTTAAATTACTTTTTCATATTATCAGTGCAATTTAACTTAGACTATGAGTGTAATTTAACAAGTCACGATATTTATGTCATTTTCTAGTAATTAATGTTACTAAATTACCTATAGCTATTTATATATTTTCTTGTCGAAATAGAAGTCAAATTCACAATCTTTAAAATAGGGGTAAATTTATTAAGTCAAACACAAGAAAAAAAACCTCTCATAAATATACATGTACACCGATAGAAAAGTCTAAGAGGAATTGGTTATTTGACTAAATTATGTAAAAAAAAGTTAAAAATTATATATATTTCTTTAGTTTAAGGTAAAAATAAATAAATCAAAAAACTTGTTGATCACGCATTAGTTAGTTCTGATGTCAGCACCTCAACTCAAAGACTTAAGTTATTTCCTCTAATTGAAACTGCATTCATTCATTATGTATGAGTCAACTTTCTAATTTGAAATAGTAAAATAATAAAAATATAAATGATGCAACAGTTCAAAAAAAAATTTCTATCAATAATAAAAATATATTAGTGTTTTCTATCGAAAATTGATTATGTAAAATTTGTTTTTGCAGGCTGAAGTAAAGTTTTTGGGAAAACTTAGCCACCCAAATTTAGTAAAACTAATTGGATATTGTTGGGAAGACAAAACATTTCTTCTAGTCTATGAGCACATGCAAAAAGGGAGCTTAGAAAGTCATCTTTTCAGAAGTAAGGCACCTTACAAATACTATTCTTTCATTAACTCGATTTAATTTATGTACATTGACATTATAAAAAGAAAATATTCGATTTTATTAGCAGAAGGCGCTGAAGCATTGTCATGGGGTACAAGGCTGAAAATAGCAATCGGAGCAGCGAAGGGACTTGATTTCTTACACACCATAGAAAAACAAGTTATTTACCGCGATTTTAAAACGGCCAATATTTTACTGGACTCGGTAATTCTTCTTTTTTTTTTTTTCTTAAAATAGAATATACGTTTTATGTTATTGACAATACTAGTTTTACTAATAAAATGTTGGTTTCAATTATTGTGACAGGACTATAATGCAAAGCTTTCAGATTTTGGACTAGCAAAAATGGGTCCAGTAAATGG</genome_strand>
        <mrna_strand>ATTAATACATCTCCGGGAAGTAACACAAGGAGTGTGGTGGCGCAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACGCCAAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATGCAGACAGTGAACAAGGTCTTAAAGAATGGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGTAAAGTTTTTGGGAAAACTTAGCCACCCAAATTTAGTAAAACTAATTGGATATTGTTGGGAAGACAAAACATTTCTTCTAGTCTATGAGCACATGCAAAAAGGGAGCTTAGAAAGTCATCTTTTCAGAA..........................................................................................CAGAAGGCGCTGAAGCATTGTCATGGGGTACAAGGCTGAAAATAGCAATCGGAGCAGCGAAGGGACTTGATTTCTTACACACCATAGAAAAACAAGTTATTTACCGCGATTTTAAAACGGCCAATATTTTACTGGACTCG......................................................................................................GACTATAATGCAAAGCTTTCAGATTTTGGACTAGCAAAAATGGGTCCAGTAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207357" ref_strand="+" ref_description="SGN-E207357 [cLEC-36-K11]">
      <seq>ctccgggaagtaacacaaggagtgtggtggcgcagcctagcggagatggcggtgattcgaggaaaatggaagttccggctagcggaaaaataattacgccaaatttaaaaatgtttacgctagcggaattaaagagcgcgacgcgtaattttcggcccgatacggtgctaggtgagggaggatttggtacagtatttaaaggatgggtcgatgacaaaacatttgcaccttctagagttggagttggtatgcctgttgctgttaaaaaatcaaatgcagacagtgaacaaggtcttaaagaatggcaggctgaagtaaagtttttgggaaaacttagccacccaaatttagtaaaactaattggatattgttgggaagacaaaacatttcttctagtctatgagcacatgcaaaaagggagcttagaaagtcatcttttcagaaaaggcgctgaagcattgtcatggggtacaaggctgaaaatagcaatcggagcagcgaagggacttgatttcttacacaccatagaaaaacaagttatttaccgcgattttaaaacggccaatattttactggactcggactataatgcaaagctttcagattttggactagcaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="44585" stop="41583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44285" g_stop="43978" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43977" i_stop="42392" i_length="1586">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42391" g_stop="42256" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="444" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42255" i_stop="42163" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42162" g_stop="42026" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="581" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42025" i_stop="41924" i_length="102">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41923" g_stop="41883" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="622" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E207357" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44285" e_stop="43978"/>
          <exon e_start="42391" e_stop="42256"/>
          <exon e_start="42162" e_stop="42026"/>
          <exon e_start="41923" e_stop="41883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGGGAAGTAACACAAGGAGTGTGGTGGCGCAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACGCCAAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATGCAGACAGTGAACAAGGTCTTAAAGAATGGCAGGTTAGTTATAATATATCCTTCCATGCTTTTTTTTAAAAATATAATATCTGACACGATTAATCTAAATTAGTCGGTTGAGTAAAGAGCTTTTCAACGATAATAATGATTGTATGTGTTTGGTGGTGGGTGCGAGTGGGAAAGAGGGGAGGTCATATATGATATGTGATGTCATTTTTATCAAAATATCAATATTATATACGATCGATTGAGTATATTTTATGTACGCCTCAAAATTCAAAACTTCAAGTCGAACGGATCGCATTATACTATGGGTGGTCCATGAATTTTTAATTCATGCAGAAGCAATAATGTTGATCAGAATATAATTTCTTTTATTTTCTCTCATTTTTTACGTTCATTAAAAGCCGGGAATATTAAATTGACAATTGAGTGCCATAAGACCAAACACTCGAGCTATTAATTAAACTTTATAACCAACAAAATAGACTCCTCCAAAAGTCAAACTTGTGCTTGATTTGAAAATTTAGTTAAATTTTATTATATTACTCCTATATTTTATTATAAAATATTGTATGTAGAACCGGAGCTAGCATATATATATATTTAGTTAAAATTCAATAATTTAATATAAAAAATATGTATAAATTATTAAATTAAAACTTAATAACATAAAAAAAATTATATTAAATATATAAACTTTGAGCTAAGTCGAATTATATATGATATAAAAGTATGAGTTTGGATAGTCTTCGATTTTTTTTTAATATTATCGATATAACTTTCTTCAGGTATTTAAAATGTTTTTCTTTTCTTTTCTTATAGCTAATATTTGACTAGTCACTTCTCTGAGGAGAAAAAAAAAGAGAGTCTAATAATTAGATCAATTAATTAAATGTTAGAAGATAATATAGTTTGACTCTATCAAAGTATCCACGTGGGTTTCCATACTACCTATTAATTTGTGGAAAATATTTTAATTAAATTTTAATTGTGAAAAATAAATATCACAACTCACACAAATATATTCCATTACTATAATATATTGCATGCAAGTTTAAATTACTTTTTCATATTATCAGTGCAATTTAACTTAGACTATGAGTGTAATTTAACAAGTCACGATATTTATGTCATTTTCTAGTAATTAATGTTACTAAATTACCTATAGCTATTTATATATTTTCTTGTCGAAATAGAAGTCAAATTCACAATCTTTAAAATAGGGGTAAATTTATTAAGTCAAACACAAGAAAAAAAACCTCTCATAAATATACATGTACACCGATAGAAAAGTCTAAGAGGAATTGGTTATTTGACTAAATTATGTAAAAAAAAGTTAAAAATTATATATATTTCTTTAGTTTAAGGTAAAAATAAATAAATCAAAAAACTTGTTGATCACGCATTAGTTAGTTCTGATGTCAGCACCTCAACTCAAAGACTTAAGTTATTTCCTCTAATTGAAACTGCATTCATTCATTATGTATGAGTCAACTTTCTAATTTGAAATAGTAAAATAATAAAAATATAAATGATGCAACAGTTCAAAAAAAAATTTCTATCAATAATAAAAATATATTAGTGTTTTCTATCGAAAATTGATTATGTAAAATTTGTTTTTGCAGGCTGAAGTAAAGTTTTTGGGAAAACTTAGCCACCCAAATTTAGTAAAACTAATTGGATATTGTTGGGAAGACAAAACATTTCTTCTAGTCTATGAGCACATGCAAAAAGGGAGCTTAGAAAGTCATCTTTTCAGAAGTAAGGCACCTTACAAATACTATTCTTTCATTAACTCGATTTAATTTATGTACATTGACATTATAAAAAGAAAATATTCGATTTTATTAGCAGAAGGCGCTGAAGCATTGTCATGGGGTACAAGGCTGAAAATAGCAATCGGAGCAGCGAAGGGACTTGATTTCTTACACACCATAGAAAAACAAGTTATTTACCGCGATTTTAAAACGGCCAATATTTTACTGGACTCGGTAATTCTTCTTTTTTTTTTTTTCTTAAAATAGAATATACGTTTTATGTTATTGACAATACTAGTTTTACTAATAAAATGTTGGTTTCAATTATTGTGACAGGACTATAATGCAAAGCTTTCAGATTTTGGACTAGCAAAAAT</genome_strand>
        <mrna_strand>CTCCGGGAAGTAACACAAGGAGTGTGGTGGCGCAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACGCCAAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATGCAGACAGTGAACAAGGTCTTAAAGAATGGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGTAAAGTTTTTGGGAAAACTTAGCCACCCAAATTTAGTAAAACTAATTGGATATTGTTGGGAAGACAAAACATTTCTTCTAGTCTATGAGCACATGCAAAAAGGGAGCTTAGAAAGTCATCTTTTCAGAA.............................................................................................AAGGCGCTGAAGCATTGTCATGGGGTACAAGGCTGAAAATAGCAATCGGAGCAGCGAAGGGACTTGATTTCTTACACACCATAGAAAAACAAGTTATTTACCGCGATTTTAAAACGGCCAATATTTTACTGGACTCG......................................................................................................GACTATAATGCAAAGCTTTCAGATTTTGGACTAGCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212387" ref_strand="+" ref_description="SGN-E212387 [cLEC-74-O8]">
      <seq>aaaaatattattacaacagaaataatgggaaattgttggccaaaacctgtggatgttgttcctcccacctctaatactcctcctccagtgatcatgaagaaaccaattaatacatctccgggaagtaacacaaggagtgtggtggcgcagcctagcggagatggcggtgattcgaggaaaatggaagttccggctagcggaaaaataattacgccaaatttaaaaatgtttacgctagcggaattaaagagcgcgacgcgtaattttcggcccgatacggtgctaggtgagggaggatttggtacagtatttaaaggatgggtcgatgacaaaacatttgcaccttctagagttggagttggtatgcctgttgctgttaaaaaatcaaatgcagacagtgaacaaggtcttaaagaatggcaggctgaagtaaagtttttgggaaaacttagccacccaaatttagtaaaactaattggatattgttgggaagacaaaacatttcttctagtctatgagcacatgcaaaaagggagcttagaaagtcatcttttcagaacagaaggcgctgaagcattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="45118" stop="41844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44818" g_stop="44731" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44730" i_stop="44313" i_length="418">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44312" g_stop="43978" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="423" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43977" i_stop="42392" i_length="1586">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42391" g_stop="42256" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="559" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42255" i_stop="42166" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42165" g_stop="42144" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="581" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E212387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44818" e_stop="44731"/>
          <exon e_start="44312" e_stop="43978"/>
          <exon e_start="42391" e_stop="42256"/>
          <exon e_start="42165" e_stop="42144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATTATTACAACAGAAATAATGGGAAATTGTTGGCCAAAACCTGTGGATGTTGTTCCTCCCACCTCTAATACTCCTCCTCCAGGTATTTTAGTCCGTTTCAGAAAGAACATACTTATTTTCTATATTACAATCGAAACTCTCGTATTGTTGCAACTATTTAAAATCACAGACTTCTAGTATGTATATAACAAAAGTTTTCATTCATTATCTTCAATTCTGTGCTTGATCAAACTTTCGAAAGGAAAATAAAGGTTGAAATACATGTATAAGGTCAAAATTAATTTATTATGTATACAAGGCGTATAGTTGAATCTTATTAATTTCTTCGTCTGTTATTTATTTTAATTAAAATTCTGACGGTTCAAGAGTACTAATTTGATTATGCCATAAAGAAAACAGTTCCATTTTCTAATTATTATTTTTTTATGTTTGCTAAAAATTCTGACTCGTAATTATTTCACGCGAGAAGTATCTTTTTCTAATTTTCCATCCCTTGTTAGTGATCATGAAGAAACCAATTAATACATCTCCGGGAAGTAACACAAGGAGTGTGGTGGCGCAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACGCCAAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATGCAGACAGTGAACAAGGTCTTAAAGAATGGCAGGTTAGTTATAATATATCCTTCCATGCTTTTTTTTAAAAATATAATATCTGACACGATTAATCTAAATTAGTCGGTTGAGTAAAGAGCTTTTCAACGATAATAATGATTGTATGTGTTTGGTGGTGGGTGCGAGTGGGAAAGAGGGGAGGTCATATATGATATGTGATGTCATTTTTATCAAAATATCAATATTATATACGATCGATTGAGTATATTTTATGTACGCCTCAAAATTCAAAACTTCAAGTCGAACGGATCGCATTATACTATGGGTGGTCCATGAATTTTTAATTCATGCAGAAGCAATAATGTTGATCAGAATATAATTTCTTTTATTTTCTCTCATTTTTTACGTTCATTAAAAGCCGGGAATATTAAATTGACAATTGAGTGCCATAAGACCAAACACTCGAGCTATTAATTAAACTTTATAACCAACAAAATAGACTCCTCCAAAAGTCAAACTTGTGCTTGATTTGAAAATTTAGTTAAATTTTATTATATTACTCCTATATTTTATTATAAAATATTGTATGTAGAACCGGAGCTAGCATATATATATATTTAGTTAAAATTCAATAATTTAATATAAAAAATATGTATAAATTATTAAATTAAAACTTAATAACATAAAAAAAATTATATTAAATATATAAACTTTGAGCTAAGTCGAATTATATATGATATAAAAGTATGAGTTTGGATAGTCTTCGATTTTTTTTTAATATTATCGATATAACTTTCTTCAGGTATTTAAAATGTTTTTCTTTTCTTTTCTTATAGCTAATATTTGACTAGTCACTTCTCTGAGGAGAAAAAAAAAGAGAGTCTAATAATTAGATCAATTAATTAAATGTTAGAAGATAATATAGTTTGACTCTATCAAAGTATCCACGTGGGTTTCCATACTACCTATTAATTTGTGGAAAATATTTTAATTAAATTTTAATTGTGAAAAATAAATATCACAACTCACACAAATATATTCCATTACTATAATATATTGCATGCAAGTTTAAATTACTTTTTCATATTATCAGTGCAATTTAACTTAGACTATGAGTGTAATTTAACAAGTCACGATATTTATGTCATTTTCTAGTAATTAATGTTACTAAATTACCTATAGCTATTTATATATTTTCTTGTCGAAATAGAAGTCAAATTCACAATCTTTAAAATAGGGGTAAATTTATTAAGTCAAACACAAGAAAAAAAACCTCTCATAAATATACATGTACACCGATAGAAAAGTCTAAGAGGAATTGGTTATTTGACTAAATTATGTAAAAAAAAGTTAAAAATTATATATATTTCTTTAGTTTAAGGTAAAAATAAATAAATCAAAAAACTTGTTGATCACGCATTAGTTAGTTCTGATGTCAGCACCTCAACTCAAAGACTTAAGTTATTTCCTCTAATTGAAACTGCATTCATTCATTATGTATGAGTCAACTTTCTAATTTGAAATAGTAAAATAATAAAAATATAAATGATGCAACAGTTCAAAAAAAAATTTCTATCAATAATAAAAATATATTAGTGTTTTCTATCGAAAATTGATTATGTAAAATTTGTTTTTGCAGGCTGAAGTAAAGTTTTTGGGAAAACTTAGCCACCCAAATTTAGTAAAACTAATTGGATATTGTTGGGAAGACAAAACATTTCTTCTAGTCTATGAGCACATGCAAAAAGGGAGCTTAGAAAGTCATCTTTTCAGAAGTAAGGCACCTTACAAATACTATTCTTTCATTAACTCGATTTAATTTATGTACATTGACATTATAAAAAGAAAATATTCGATTTTATTAGCAGAAGGCGCTGAAGCATTGTC</genome_strand>
        <mrna_strand>AAAAATATTATTACAACAGAAATAATGGGAAATTGTTGGCCAAAACCTGTGGATGTTGTTCCTCCCACCTCTAATACTCCTCCTCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCATGAAGAAACCAATTAATACATCTCCGGGAAGTAACACAAGGAGTGTGGTGGCGCAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACGCCAAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATGCAGACAGTGAACAAGGTCTTAAAGAATGGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGTAAAGTTTTTGGGAAAACTTAGCCACCCAAATTTAGTAAAACTAATTGGATATTGTTGGGAAGACAAAACATTTCTTCTAGTCTATGAGCACATGCAAAAAGGGAGCTTAGAAAGTCATCTTTTCAGAA..........................................................................................CAGAAGGCGCTGAAGCATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206139" ref_strand="+" ref_description="SGN-E206139 [cLEC-29-F14]">
      <seq>agaaataatgggaaattgttggccaaaacctgtggatgttgttcctcccacctctaatactcctcctccagtgatcatgaagaaaccaattaatacatctccgggaagtaacacaaggagtgtggtggcgcagcctagcggagatggcggtgattcgaggaaaatggaagttccggctagcggaaaaataattacgccaaatttaaaaatgtttacgctagcggaattaaagagcgcgacgcgtaattttcggcccgatacggtgctaggtgagggaggatttggtacagtatttaaaggatgggtcgatgacaaaacatttgcaccttctagagttggagttggtatgcctgttgctgttaaaaaatcaaatgcagacagtgaacaaggtcttaaagaatggcaggctgaagtaaagtttttgggaaaacttagccacccaaatttagtaaaactaattggatattgttgggaagacaaaacatttcttctagtctatgagcacatgcaaaaaggggagcttagaaagtcatcttttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="45101" stop="41958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44801" g_stop="44731" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44730" i_stop="44313" i_length="418">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44312" g_stop="43978" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="406" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43977" i_stop="42392" i_length="1586">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42391" g_stop="42258" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="541" r_length="135" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E206139" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44801" e_stop="44731"/>
          <exon e_start="44312" e_stop="43978"/>
          <exon e_start="42391" e_stop="42258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATAATGGGAAATTGTTGGCCAAAACCTGTGGATGTTGTTCCTCCCACCTCTAATACTCCTCCTCCAGGTATTTTAGTCCGTTTCAGAAAGAACATACTTATTTTCTATATTACAATCGAAACTCTCGTATTGTTGCAACTATTTAAAATCACAGACTTCTAGTATGTATATAACAAAAGTTTTCATTCATTATCTTCAATTCTGTGCTTGATCAAACTTTCGAAAGGAAAATAAAGGTTGAAATACATGTATAAGGTCAAAATTAATTTATTATGTATACAAGGCGTATAGTTGAATCTTATTAATTTCTTCGTCTGTTATTTATTTTAATTAAAATTCTGACGGTTCAAGAGTACTAATTTGATTATGCCATAAAGAAAACAGTTCCATTTTCTAATTATTATTTTTTTATGTTTGCTAAAAATTCTGACTCGTAATTATTTCACGCGAGAAGTATCTTTTTCTAATTTTCCATCCCTTGTTAGTGATCATGAAGAAACCAATTAATACATCTCCGGGAAGTAACACAAGGAGTGTGGTGGCGCAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACGCCAAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATGCAGACAGTGAACAAGGTCTTAAAGAATGGCAGGTTAGTTATAATATATCCTTCCATGCTTTTTTTTAAAAATATAATATCTGACACGATTAATCTAAATTAGTCGGTTGAGTAAAGAGCTTTTCAACGATAATAATGATTGTATGTGTTTGGTGGTGGGTGCGAGTGGGAAAGAGGGGAGGTCATATATGATATGTGATGTCATTTTTATCAAAATATCAATATTATATACGATCGATTGAGTATATTTTATGTACGCCTCAAAATTCAAAACTTCAAGTCGAACGGATCGCATTATACTATGGGTGGTCCATGAATTTTTAATTCATGCAGAAGCAATAATGTTGATCAGAATATAATTTCTTTTATTTTCTCTCATTTTTTACGTTCATTAAAAGCCGGGAATATTAAATTGACAATTGAGTGCCATAAGACCAAACACTCGAGCTATTAATTAAACTTTATAACCAACAAAATAGACTCCTCCAAAAGTCAAACTTGTGCTTGATTTGAAAATTTAGTTAAATTTTATTATATTACTCCTATATTTTATTATAAAATATTGTATGTAGAACCGGAGCTAGCATATATATATATTTAGTTAAAATTCAATAATTTAATATAAAAAATATGTATAAATTATTAAATTAAAACTTAATAACATAAAAAAAATTATATTAAATATATAAACTTTGAGCTAAGTCGAATTATATATGATATAAAAGTATGAGTTTGGATAGTCTTCGATTTTTTTTTAATATTATCGATATAACTTTCTTCAGGTATTTAAAATGTTTTTCTTTTCTTTTCTTATAGCTAATATTTGACTAGTCACTTCTCTGAGGAGAAAAAAAAAGAGAGTCTAATAATTAGATCAATTAATTAAATGTTAGAAGATAATATAGTTTGACTCTATCAAAGTATCCACGTGGGTTTCCATACTACCTATTAATTTGTGGAAAATATTTTAATTAAATTTTAATTGTGAAAAATAAATATCACAACTCACACAAATATATTCCATTACTATAATATATTGCATGCAAGTTTAAATTACTTTTTCATATTATCAGTGCAATTTAACTTAGACTATGAGTGTAATTTAACAAGTCACGATATTTATGTCATTTTCTAGTAATTAATGTTACTAAATTACCTATAGCTATTTATATATTTTCTTGTCGAAATAGAAGTCAAATTCACAATCTTTAAAATAGGGGTAAATTTATTAAGTCAAACACAAGAAAAAAAACCTCTCATAAATATACATGTACACCGATAGAAAAGTCTAAGAGGAATTGGTTATTTGACTAAATTATGTAAAAAAAAGTTAAAAATTATATATATTTCTTTAGTTTAAGGTAAAAATAAATAAATCAAAAAACTTGTTGATCACGCATTAGTTAGTTCTGATGTCAGCACCTCAACTCAAAGACTTAAGTTATTTCCTCTAATTGAAACTGCATTCATTCATTATGTATGAGTCAACTTTCTAATTTGAAATAGTAAAATAATAAAAATATAAATGATGCAACAGTTCAAAAAAAAATTTCTATCAATAATAAAAATATATTAGTGTTTTCTATCGAAAATTGATTATGTAAAATTTGTTTTTGCAGGCTGAAGTAAAGTTTTTGGGAAAACTTAGCCACCCAAATTTAGTAAAACTAATTGGATATTGTTGGGAAGACAAAACATTTCTTCTAGTCTATGAGCACATGCAAAAA-GGGAGCTTAGAAAGTCATCTTTTCAG</genome_strand>
        <mrna_strand>AGAAATAATGGGAAATTGTTGGCCAAAACCTGTGGATGTTGTTCCTCCCACCTCTAATACTCCTCCTCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCATGAAGAAACCAATTAATACATCTCCGGGAAGTAACACAAGGAGTGTGGTGGCGCAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACGCCAAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATGCAGACAGTGAACAAGGTCTTAAAGAATGGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGTAAAGTTTTTGGGAAAACTTAGCCACCCAAATTTAGTAAAACTAATTGGATATTGTTGGGAAGACAAAACATTTCTTCTAGTCTATGAGCACATGCAAAAAGGGGAGCTTAGAAAGTCATCTTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483278" ref_strand="+" ref_description="SGN-E483278 [cSTE-8-P17]">
      <seq>tcaactattcttattatttagtagcaacaacacaaactacttctcccaaaaatattacaacaaagaaaaaatgggaaattgttggccaaaacctgttgatgttcttcctaccactgtcaaatactctaatagtattccttcagtgatcatgaagaaaccaactaatacatctccgggaagtaacacaaggaatgtggtggcgaagcctagcggagatggcggtgattcgaggaaagtggaagttccggctagcggaaaaataatcacgccgaatttaaaaatgtttacgctagcggaattaaagagcgcgacgcggaattttcggcccgatacggtgctaggagagggaggatttggtacagtatttaaaggatgggtcgatgataaaacatttgcaccttctaaagttggagttggtatgcctgttgctgttaaaaaatcaaatcctgatagtgaacaaggtcttaaagaatggcaggctgaagtaaagtttttgggaaaatttantcacccaaatttagtaaaattaattggatattgttgggaagaaaaaacattccttctagtatatgaacacatgcagaaaggaagcttagaaagtcatcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="45165" stop="41960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44865" g_stop="44731" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44730" i_stop="44326" i_length="405">
            <donor d_prob="0.990" d_score="0.76"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44325" g_stop="43978" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="478" r_length="346" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43977" i_stop="42392" i_length="1586">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42391" g_stop="42260" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="610" r_length="132" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E483278" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44865" e_stop="44731"/>
          <exon e_start="44325" e_stop="43978"/>
          <exon e_start="42391" e_stop="42260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTATTATTATTATTTAGAAGCAACAACACAAACTACTTCTCCCAAAAATATTATTACAACAGAAATAATGGGAAATTGTTGGCCAAAACCTGTGGATGTTGTTCCTCCCAC-CTCTAATACTCCTCCTCCAGGTATTTTAGTCCGTTTCAGAAAGAACATACTTATTTTCTATATTACAATCGAAACTCTCGTATTGTTGCAACTATTTAAAATCACAGACTTCTAGTATGTATATAACAAAAGTTTTCATTCATTATCTTCAATTCTGTGCTTGATCAAACTTTCGAAAGGAAAATAAAGGTTGAAATACATGTATAAGGTCAAAATTAATTTATTATGTATACAAGGCGTATAGTTGAATCTTATTAATTTCTTCGTCTGTTATTTATTTTAATTAAAATTCTGACGGTTCAAGAGTACTAATTTGATTATGCCATAAAGAAAACAGTTCCATTTTCTAATTATTATTTTTTTATGTTTGCTAAAAATTCTGACTCGTAATTATTTCACGCGAGAAGTATCTTTTTCTAATTTTCCATCCCTTGTTAGTGATCATGAAGAAACCAATTAATACATCTCCGGGAAGTAACACAAGGAGTGTGGTGGCGCAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACGCCAAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATGCAGACAGTGAACAAGGTCTTAAAGAATGGCAGGTTAGTTATAATATATCCTTCCATGCTTTTTTTTAAAAATATAATATCTGACACGATTAATCTAAATTAGTCGGTTGAGTAAAGAGCTTTTCAACGATAATAATGATTGTATGTGTTTGGTGGTGGGTGCGAGTGGGAAAGAGGGGAGGTCATATATGATATGTGATGTCATTTTTATCAAAATATCAATATTATATACGATCGATTGAGTATATTTTATGTACGCCTCAAAATTCAAAACTTCAAGTCGAACGGATCGCATTATACTATGGGTGGTCCATGAATTTTTAATTCATGCAGAAGCAATAATGTTGATCAGAATATAATTTCTTTTATTTTCTCTCATTTTTTACGTTCATTAAAAGCCGGGAATATTAAATTGACAATTGAGTGCCATAAGACCAAACACTCGAGCTATTAATTAAACTTTATAACCAACAAAATAGACTCCTCCAAAAGTCAAACTTGTGCTTGATTTGAAAATTTAGTTAAATTTTATTATATTACTCCTATATTTTATTATAAAATATTGTATGTAGAACCGGAGCTAGCATATATATATATTTAGTTAAAATTCAATAATTTAATATAAAAAATATGTATAAATTATTAAATTAAAACTTAATAACATAAAAAAAATTATATTAAATATATAAACTTTGAGCTAAGTCGAATTATATATGATATAAAAGTATGAGTTTGGATAGTCTTCGATTTTTTTTTAATATTATCGATATAACTTTCTTCAGGTATTTAAAATGTTTTTCTTTTCTTTTCTTATAGCTAATATTTGACTAGTCACTTCTCTGAGGAGAAAAAAAAAGAGAGTCTAATAATTAGATCAATTAATTAAATGTTAGAAGATAATATAGTTTGACTCTATCAAAGTATCCACGTGGGTTTCCATACTACCTATTAATTTGTGGAAAATATTTTAATTAAATTTTAATTGTGAAAAATAAATATCACAACTCACACAAATATATTCCATTACTATAATATATTGCATGCAAGTTTAAATTACTTTTTCATATTATCAGTGCAATTTAACTTAGACTATGAGTGTAATTTAACAAGTCACGATATTTATGTCATTTTCTAGTAATTAATGTTACTAAATTACCTATAGCTATTTATATATTTTCTTGTCGAAATAGAAGTCAAATTCACAATCTTTAAAATAGGGGTAAATTTATTAAGTCAAACACAAGAAAAAAAACCTCTCATAAATATACATGTACACCGATAGAAAAGTCTAAGAGGAATTGGTTATTTGACTAAATTATGTAAAAAAAAGTTAAAAATTATATATATTTCTTTAGTTTAAGGTAAAAATAAATAAATCAAAAAACTTGTTGATCACGCATTAGTTAGTTCTGATGTCAGCACCTCAACTCAAAGACTTAAGTTATTTCCTCTAATTGAAACTGCATTCATTCATTATGTATGAGTCAACTTTCTAATTTGAAATAGTAAAATAATAAAAATATAAATGATGCAACAGTTCAAAAAAAAATTTCTATCAATAATAAAAATATATTAGTGTTTTCTATCGAAAATTGATTATGTAAAATTTGTTTTTGCAGGCTGAAGTAAAGTTTTTGGGAAAACTTAGCCACCCAAATTTAGTAAAACTAATTGGATATTGTTGGGAAGACAAAACATTTCTTCTAGTCTATGAGCACATGCAAAAAGGGAGCTTAGAAAGTCATCTTTTC</genome_strand>
        <mrna_strand>TCAACTATTCTTATTATTTAGTAGCAACAACACAAACTACTTCTCCCAAAAATATTACAACAA-AGAAAAAATGGGAAATTGTTGGCCAAAACCTGTTGATGTTCTTCCTACCACTGTCAAATACT-CTAAT--AG.....................................................................................................................................................................................................................................................................................................................................................................................................................TATTCC-T-TCAGTGATCATGAAGAAACCAACTAATACATCTCCGGGAAGTAACACAAGGAATGTGGTGGCGAAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAGTGGAAGTTCCGGCTAGCGGAAAAATAATCACGCCGAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGGAATTTTCGGCCCGATACGGTGCTAGGAGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGATAAAACATTTGCACCTTCTAAAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATCCTGATAGTGAACAAGGTCTTAAAGAATGGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGTAAAGTTTTTGGGAAAATTTANTCACCCAAATTTAGTAAAATTAATTGGATATTGTTGGGAAGAAAAAACATTCCTTCTAGTATATGAACACATGCAGAAAGGAAGCTTAGAAAGTCATCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426639" ref_strand="+" ref_description="SGN-E426639 [STM-46-N6]">
      <seq>ctcctttccttctctcttcctaagaaattaatgcactccacaaccacaagaaaactatcaactattcttattatttagtagcaacaacacaaactacttctcccaaaaatattacaacaaagaaaaaatgggaaattgttggccaaaacctgttgatgttcttcctaccactgtcaaatactctaatagtattccttcagtgatcatgaagaaaccaactaatacatctccgggaagtaacacaaggaatgtggtggcgaagcctagcggagatggcggtgattcgaggaaagtggaagttccggctagcggaaaaataatcacgccgaatttaaaaatgtttacgctagcggaattaaagagcgcgacgcggaattttcggcccgatacggtgctaggagagggaggatttggtacagtatttaaaggatgggtcgatgataaaacatttgcaccttctaaagttggagttggtatgcctgttgctgttaaaaaatcaaatcctgatagtgaacaaggtcttanagaatggcaggctgaagtaaagtttttgggaaaatttagtcacccaaatttagtaaaattaatgggatattgttgggaagaaaaacattccttctagtatatgaacacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="45232" stop="41989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44932" g_stop="44731" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44730" i_stop="44326" i_length="405">
            <donor d_prob="0.990" d_score="0.76"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44325" g_stop="43978" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="535" r_length="346" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43977" i_stop="42392" i_length="1586">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42391" g_stop="42289" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="637" r_length="102" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E426639" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44932" e_stop="44731"/>
          <exon e_start="44325" e_stop="43978"/>
          <exon e_start="42391" e_stop="42289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTCCTTCTGTCTTCCTAAGAAATTAACACACTCCACAACCACAAGAAAACTATCACCTATTCTTATTTATTATTATTATTTAGAAGCAACAACACAAACTACTTCTCCCAAAAATATTATTACAACAGAAATAATGGGAAATTGTTGGCCAAAACCTGTGGATGTTGTTCCTCCCAC-CTCTAATACTCCTCCTCCAGGTATTTTAGTCCGTTTCAGAAAGAACATACTTATTTTCTATATTACAATCGAAACTCTCGTATTGTTGCAACTATTTAAAATCACAGACTTCTAGTATGTATATAACAAAAGTTTTCATTCATTATCTTCAATTCTGTGCTTGATCAAACTTTCGAAAGGAAAATAAAGGTTGAAATACATGTATAAGGTCAAAATTAATTTATTATGTATACAAGGCGTATAGTTGAATCTTATTAATTTCTTCGTCTGTTATTTATTTTAATTAAAATTCTGACGGTTCAAGAGTACTAATTTGATTATGCCATAAAGAAAACAGTTCCATTTTCTAATTATTATTTTTTTATGTTTGCTAAAAATTCTGACTCGTAATTATTTCACGCGAGAAGTATCTTTTTCTAATTTTCCATCCCTTGTTAGTGATCATGAAGAAACCAATTAATACATCTCCGGGAAGTAACACAAGGAGTGTGGTGGCGCAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACGCCAAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATGCAGACAGTGAACAAGGTCTTAAAGAATGGCAGGTTAGTTATAATATATCCTTCCATGCTTTTTTTTAAAAATATAATATCTGACACGATTAATCTAAATTAGTCGGTTGAGTAAAGAGCTTTTCAACGATAATAATGATTGTATGTGTTTGGTGGTGGGTGCGAGTGGGAAAGAGGGGAGGTCATATATGATATGTGATGTCATTTTTATCAAAATATCAATATTATATACGATCGATTGAGTATATTTTATGTACGCCTCAAAATTCAAAACTTCAAGTCGAACGGATCGCATTATACTATGGGTGGTCCATGAATTTTTAATTCATGCAGAAGCAATAATGTTGATCAGAATATAATTTCTTTTATTTTCTCTCATTTTTTACGTTCATTAAAAGCCGGGAATATTAAATTGACAATTGAGTGCCATAAGACCAAACACTCGAGCTATTAATTAAACTTTATAACCAACAAAATAGACTCCTCCAAAAGTCAAACTTGTGCTTGATTTGAAAATTTAGTTAAATTTTATTATATTACTCCTATATTTTATTATAAAATATTGTATGTAGAACCGGAGCTAGCATATATATATATTTAGTTAAAATTCAATAATTTAATATAAAAAATATGTATAAATTATTAAATTAAAACTTAATAACATAAAAAAAATTATATTAAATATATAAACTTTGAGCTAAGTCGAATTATATATGATATAAAAGTATGAGTTTGGATAGTCTTCGATTTTTTTTTAATATTATCGATATAACTTTCTTCAGGTATTTAAAATGTTTTTCTTTTCTTTTCTTATAGCTAATATTTGACTAGTCACTTCTCTGAGGAGAAAAAAAAAGAGAGTCTAATAATTAGATCAATTAATTAAATGTTAGAAGATAATATAGTTTGACTCTATCAAAGTATCCACGTGGGTTTCCATACTACCTATTAATTTGTGGAAAATATTTTAATTAAATTTTAATTGTGAAAAATAAATATCACAACTCACACAAATATATTCCATTACTATAATATATTGCATGCAAGTTTAAATTACTTTTTCATATTATCAGTGCAATTTAACTTAGACTATGAGTGTAATTTAACAAGTCACGATATTTATGTCATTTTCTAGTAATTAATGTTACTAAATTACCTATAGCTATTTATATATTTTCTTGTCGAAATAGAAGTCAAATTCACAATCTTTAAAATAGGGGTAAATTTATTAAGTCAAACACAAGAAAAAAAACCTCTCATAAATATACATGTACACCGATAGAAAAGTCTAAGAGGAATTGGTTATTTGACTAAATTATGTAAAAAAAAGTTAAAAATTATATATATTTCTTTAGTTTAAGGTAAAAATAAATAAATCAAAAAACTTGTTGATCACGCATTAGTTAGTTCTGATGTCAGCACCTCAACTCAAAGACTTAAGTTATTTCCTCTAATTGAAACTGCATTCATTCATTATGTATGAGTCAACTTTCTAATTTGAAATAGTAAAATAATAAAAATATAAATGATGCAACAGTTCAAAAAAAAATTTCTATCAATAATAAAAATATATTAGTGTTTTCTATCGAAAATTGATTATGTAAAATTTGTTTTTGCAGGCTGAAGTAAAGTTTTTGGGAAAACTTAGCCACCCAAATTTAGTAAAACTAATTGGATATTGTTGGGAAGACAAAACATTTCTTCTAGTCTATGAGCACATGC</genome_strand>
        <mrna_strand>CTCCTTTCCTTCTCTCTTCCTAAGAAATTAATGCACTCCACAACCACAAGAAAACTATCA---A--C-----TATTCTTATTATTTAGTAGCAACAACACAAACTACTTCTCCCAAAAATATTACAACAA-AGAAAAAATGGGAAATTGTTGGCCAAAACCTGTTGATGTTCTTCCTACCACTGTCAAATACT-CTAAT--AG.....................................................................................................................................................................................................................................................................................................................................................................................................................TATTCC-T-TCAGTGATCATGAAGAAACCAACTAATACATCTCCGGGAAGTAACACAAGGAATGTGGTGGCGAAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAGTGGAAGTTCCGGCTAGCGGAAAAATAATCACGCCGAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGGAATTTTCGGCCCGATACGGTGCTAGGAGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGATAAAACATTTGCACCTTCTAAAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATCCTGATAGTGAACAAGGTCTTANAGAATGGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGTAAAGTTTTTGGGAAAATTTAGTCACCCAAATTTAGTAAAATTAATGGGATATTGTTGGGAAGA-AAAACATTCCTTCTAGTATATGAACACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303019" ref_strand="+" ref_description="SGN-E303019 [cLEW-26-G22]">
      <seq>aaattaacacactccacaaccacaagaaaactatcacctattcttatttattattattatttagaagcaacaacacaaactacttctcccaaaaatattattacaacagaaataatgggaaattgttggccaaaacctgtggatgttgttcctcccacctctaatactcctcctccagtgatcatgaagaaaccaattaatacatctccgggaagtaacacaaggagtgtggtggcgccagcctagcggagatggcggtgattcgaggaaaatggaagttccggctagcggaaaaataattaccccaaatttaaaaatgtttacgctagcggaattaaagagcgcgacgcgtaattttcggcccgatacggtgctaggtgagggaggatttggtacagtatttaaaggatgggtcgatgacaaaacatttgcaccttctagagttggagttggtatgcctgttgctgttaaaaaatcaaatgcagacagtgaacaaggtcttaaagaatggcaggctgaagtaaagtttttgggaaaacttagccacccaaatttagtaaaactaattggatattgttgggaagacaaaacatttcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="45208" stop="42006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44908" g_stop="44731" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44730" i_stop="44313" i_length="418">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44312" g_stop="43978" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="514" r_length="336" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43977" i_stop="42392" i_length="1586">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42391" g_stop="42306" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="600" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E303019" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44908" e_stop="44731"/>
          <exon e_start="44312" e_stop="43978"/>
          <exon e_start="42391" e_stop="42306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTAACACACTCCACAACCACAAGAAAACTATCACCTATTCTTATTTATTATTATTATTTAGAAGCAACAACACAAACTACTTCTCCCAAAAATATTATTACAACAGAAATAATGGGAAATTGTTGGCCAAAACCTGTGGATGTTGTTCCTCCCACCTCTAATACTCCTCCTCCAGGTATTTTAGTCCGTTTCAGAAAGAACATACTTATTTTCTATATTACAATCGAAACTCTCGTATTGTTGCAACTATTTAAAATCACAGACTTCTAGTATGTATATAACAAAAGTTTTCATTCATTATCTTCAATTCTGTGCTTGATCAAACTTTCGAAAGGAAAATAAAGGTTGAAATACATGTATAAGGTCAAAATTAATTTATTATGTATACAAGGCGTATAGTTGAATCTTATTAATTTCTTCGTCTGTTATTTATTTTAATTAAAATTCTGACGGTTCAAGAGTACTAATTTGATTATGCCATAAAGAAAACAGTTCCATTTTCTAATTATTATTTTTTTATGTTTGCTAAAAATTCTGACTCGTAATTATTTCACGCGAGAAGTATCTTTTTCTAATTTTCCATCCCTTGTTAGTGATCATGAAGAAACCAATTAATACATCTCCGGGAAGTAACACAAGGAGTGTGGTGGCG-CAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACGCCAAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATGCAGACAGTGAACAAGGTCTTAAAGAATGGCAGGTTAGTTATAATATATCCTTCCATGCTTTTTTTTAAAAATATAATATCTGACACGATTAATCTAAATTAGTCGGTTGAGTAAAGAGCTTTTCAACGATAATAATGATTGTATGTGTTTGGTGGTGGGTGCGAGTGGGAAAGAGGGGAGGTCATATATGATATGTGATGTCATTTTTATCAAAATATCAATATTATATACGATCGATTGAGTATATTTTATGTACGCCTCAAAATTCAAAACTTCAAGTCGAACGGATCGCATTATACTATGGGTGGTCCATGAATTTTTAATTCATGCAGAAGCAATAATGTTGATCAGAATATAATTTCTTTTATTTTCTCTCATTTTTTACGTTCATTAAAAGCCGGGAATATTAAATTGACAATTGAGTGCCATAAGACCAAACACTCGAGCTATTAATTAAACTTTATAACCAACAAAATAGACTCCTCCAAAAGTCAAACTTGTGCTTGATTTGAAAATTTAGTTAAATTTTATTATATTACTCCTATATTTTATTATAAAATATTGTATGTAGAACCGGAGCTAGCATATATATATATTTAGTTAAAATTCAATAATTTAATATAAAAAATATGTATAAATTATTAAATTAAAACTTAATAACATAAAAAAAATTATATTAAATATATAAACTTTGAGCTAAGTCGAATTATATATGATATAAAAGTATGAGTTTGGATAGTCTTCGATTTTTTTTTAATATTATCGATATAACTTTCTTCAGGTATTTAAAATGTTTTTCTTTTCTTTTCTTATAGCTAATATTTGACTAGTCACTTCTCTGAGGAGAAAAAAAAAGAGAGTCTAATAATTAGATCAATTAATTAAATGTTAGAAGATAATATAGTTTGACTCTATCAAAGTATCCACGTGGGTTTCCATACTACCTATTAATTTGTGGAAAATATTTTAATTAAATTTTAATTGTGAAAAATAAATATCACAACTCACACAAATATATTCCATTACTATAATATATTGCATGCAAGTTTAAATTACTTTTTCATATTATCAGTGCAATTTAACTTAGACTATGAGTGTAATTTAACAAGTCACGATATTTATGTCATTTTCTAGTAATTAATGTTACTAAATTACCTATAGCTATTTATATATTTTCTTGTCGAAATAGAAGTCAAATTCACAATCTTTAAAATAGGGGTAAATTTATTAAGTCAAACACAAGAAAAAAAACCTCTCATAAATATACATGTACACCGATAGAAAAGTCTAAGAGGAATTGGTTATTTGACTAAATTATGTAAAAAAAAGTTAAAAATTATATATATTTCTTTAGTTTAAGGTAAAAATAAATAAATCAAAAAACTTGTTGATCACGCATTAGTTAGTTCTGATGTCAGCACCTCAACTCAAAGACTTAAGTTATTTCCTCTAATTGAAACTGCATTCATTCATTATGTATGAGTCAACTTTCTAATTTGAAATAGTAAAATAATAAAAATATAAATGATGCAACAGTTCAAAAAAAAATTTCTATCAATAATAAAAATATATTAGTGTTTTCTATCGAAAATTGATTATGTAAAATTTGTTTTTGCAGGCTGAAGTAAAGTTTTTGGGAAAACTTAGCCACCCAAATTTAGTAAAACTAATTGGATATTGTTGGGAAGACAAAACATTTCTTCT</genome_strand>
        <mrna_strand>AAATTAACACACTCCACAACCACAAGAAAACTATCACCTATTCTTATTTATTATTATTATTTAGAAGCAACAACACAAACTACTTCTCCCAAAAATATTATTACAACAGAAATAATGGGAAATTGTTGGCCAAAACCTGTGGATGTTGTTCCTCCCACCTCTAATACTCCTCCTCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCATGAAGAAACCAATTAATACATCTCCGGGAAGTAACACAAGGAGTGTGGTGGCGCCAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACCCCAAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATGCAGACAGTGAACAAGGTCTTAAAGAATGGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGTAAAGTTTTTGGGAAAACTTAGCCACCCAAATTTAGTAAAACTAATTGGATATTGTTGGGAAGACAAAACATTTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205935" ref_strand="+" ref_description="SGN-E205935 [cLEC-20-E13]">
      <seq>agaaattaacacactccacaaccacaagagagactatcacctgagtcttatttattattattatttagaagcaacaacacaaactacttctcccaaaaatattattacaacagaaataatgggaaattgttggccaaaacctgtggatgttgttcctcccacctctaatactcctcctccagtgatcatgaagaaaccaattaatacatctccgggaagtaacacaaggagtgtggtggcgcagcctagcggagatggcggtgattcgaggaaaatggaagttccggctagcggaaaaataattacgccaaatttaaaaatgtttacgctagcggaattaaagagcgcgacgcgtaattttcggcccgatacggtgctaggtgagggaggatttggtacagtatttaaaggatgggtcgatgacaaaacatttgcaccttctagagttggagttggtatgcctgttgctgttaaaaaatcaaatgcagacagtgaacaaggtcttaaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="45210" stop="43682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44910" g_stop="44731" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44730" i_stop="44313" i_length="418">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44312" g_stop="43982" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="513" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E205935" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44910" e_stop="44731"/>
          <exon e_start="44312" e_stop="43982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTAACACACTCCACAACCACAAGA-AAACTATCACCT-ATTCTTATTTATTATTATTATTTAGAAGCAACAACACAAACTACTTCTCCCAAAAATATTATTACAACAGAAATAATGGGAAATTGTTGGCCAAAACCTGTGGATGTTGTTCCTCCCACCTCTAATACTCCTCCTCCAGGTATTTTAGTCCGTTTCAGAAAGAACATACTTATTTTCTATATTACAATCGAAACTCTCGTATTGTTGCAACTATTTAAAATCACAGACTTCTAGTATGTATATAACAAAAGTTTTCATTCATTATCTTCAATTCTGTGCTTGATCAAACTTTCGAAAGGAAAATAAAGGTTGAAATACATGTATAAGGTCAAAATTAATTTATTATGTATACAAGGCGTATAGTTGAATCTTATTAATTTCTTCGTCTGTTATTTATTTTAATTAAAATTCTGACGGTTCAAGAGTACTAATTTGATTATGCCATAAAGAAAACAGTTCCATTTTCTAATTATTATTTTTTTATGTTTGCTAAAAATTCTGACTCGTAATTATTTCACGCGAGAAGTATCTTTTTCTAATTTTCCATCCCTTGTTAGTGATCATGAAGAAACCAATTAATACATCTCCGGGAAGTAACACAAGGAGTGTGGTGGCGCAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACGCCAAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATGCAGACAGTGAACAAGGTCTTAAAGAATG</genome_strand>
        <mrna_strand>AGAAATTAACACACTCCACAACCACAAGAGAGACTATCACCTGAGTCTTATTTATTATTATTATTTAGAAGCAACAACACAAACTACTTCTCCCAAAAATATTATTACAACAGAAATAATGGGAAATTGTTGGCCAAAACCTGTGGATGTTGTTCCTCCCACCTCTAATACTCCTCCTCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCATGAAGAAACCAATTAATACATCTCCGGGAAGTAACACAAGGAGTGTGGTGGCGCAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACGCCAAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATGCAGACAGTGAACAAGGTCTTAAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200602" ref_strand="+" ref_description="SGN-E200602 [cLEC-9-I11]">
      <seq>gaaattaacacactccacaaccacaagaaaactatcacctattcttatttattattattatttagaagcaacaacacaaactacttctgccaaaaatattattacaacagaaataatgggaaattgttggccaaaacctgtggatgttgttcctcccacctctaatactcctcctccagtgatcatgaagaaaccaattaatacatctccgggaagtaacacaaggagtgtggtggcgcagcctagcggagatggcggtgattcgaggaaaatggaagttccggctagcggaaaaataattacgccgaatttaaaaatgtttacgctagcggaattaaagagcgcgacgcgtaattttcggcccgatacggtgctaggtgagggaggatttggtacagtatttaaaggatgggtcgatgacaaaacatttgcaccttctagagttggagttggtatgcctgttgctgttaaaaaatcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0068N05-tolUr/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0068N05.1" temp_strand="-" temp_description="C04HBa0068N05.1  CU326379.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0068N05 sequenced_by:sanger upload_account_name:uk">
        <position start="45209" stop="43710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44909" g_stop="44731" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44730" i_stop="44313" i_length="418">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.687" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44312" g_stop="44010" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="482" r_length="303" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0068N05.1" gen_strand="-" ref_id="SGN-E200602" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0068N05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44909" e_stop="44731"/>
          <exon e_start="44312" e_stop="44010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTAACACACTCCACAACCACAAGAAAACTATCACCTATTCTTATTTATTATTATTATTTAGAAGCAACAACACAAACTACTTCTCCCAAAAATATTATTACAACAGAAATAATGGGAAATTGTTGGCCAAAACCTGTGGATGTTGTTCCTCCCACCTCTAATACTCCTCCTCCAGGTATTTTAGTCCGTTTCAGAAAGAACATACTTATTTTCTATATTACAATCGAAACTCTCGTATTGTTGCAACTATTTAAAATCACAGACTTCTAGTATGTATATAACAAAAGTTTTCATTCATTATCTTCAATTCTGTGCTTGATCAAACTTTCGAAAGGAAAATAAAGGTTGAAATACATGTATAAGGTCAAAATTAATTTATTATGTATACAAGGCGTATAGTTGAATCTTATTAATTTCTTCGTCTGTTATTTATTTTAATTAAAATTCTGACGGTTCAAGAGTACTAATTTGATTATGCCATAAAGAAAACAGTTCCATTTTCTAATTATTATTTTTTTATGTTTGCTAAAAATTCTGACTCGTAATTATTTCACGCGAGAAGTATCTTTTTCTAATTTTCCATCCCTTGTTAGTGATCATGAAGAAACCAATTAATACATCTCCGGGAAGTAACACAAGGAGTGTGGTGGCGCAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACGCCAAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATG</genome_strand>
        <mrna_strand>GAAATTAACACACTCCACAACCACAAGAAAACTATCACCTATTCTTATTTATTATTATTATTTAGAAGCAACAACACAAACTACTTCTGCCAAAAATATTATTACAACAGAAATAATGGGAAATTGTTGGCCAAAACCTGTGGATGTTGTTCCTCCCACCTCTAATACTCCTCCTCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCATGAAGAAACCAATTAATACATCTCCGGGAAGTAACACAAGGAGTGTGGTGGCGCAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACGCCGAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>33</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="10381" PGL_stop="12562"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10381" e_stop="10972"/>
            <exon e_start="11425" e_stop="12562"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="0.997"/>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="10381" e_stop="10972" e_length="592"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="10973" i_stop="11424" i_length="452"/>
          </intron>
          <exon e_serial="2" e_score="0.928">
            <gDNA_exon_boundary e_start="11425" e_stop="12562" e_length="1138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10381" stop="10921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10396" stop="10972"/>
              <exon start="11425" stop="11483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10497" stop="10972"/>
              <exon start="11425" stop="11614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10856" stop="10972"/>
              <exon start="11425" stop="12018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10856" stop="10972"/>
              <exon start="11425" stop="11887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11747" stop="12499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11747" stop="12349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11762" stop="12427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12089" stop="12562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348757" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGATCTAACCTCTTATAGCAAGTCAGAGTATCCACTTTCTCATTATGCAAAAATGTTTGGACTGCAAGCTGCAGTAGCTATACGTCTACGTAGTATCTCAACTGGTTCATCTGATTTTGTTTTGGAGTTCTTTCTACCCTCAGACTGCAGAAATCCTGAAGACCATAGAAAAATGCTTACTTCATTATCCATCATCATACAAAATGTTTGCCGGACATTGAGGGTTGTGACAGATAAAGAGTTGCAGGAAGAAACTATATCTGTGGGAGAAATGGCAAACCACACAGTTGAACAACATAAGGAGCACACTGAAACCTCTCAAGAAAGGACATCGTGGACCTCTTGTGACGCAGAGTTCCAGGAGAGTTCTGTTATGTCTACATTCCAGGATGAAAAACCAGATGAAATGCTAAGGAAAGATTCGGTGGAGTTTAGGCACCGTAAGAATTCTGCTTATGAGGAGGGTGTCTCTCGTAATCTGGGTAAAACGGGAGACAGGAGACGTGCGAAGGCTGAGAAGACTATTACCTTGCAAGTTCTTCAGCAGTATTTTGCTGGTAGCCTAAAAGATGCTGCAAAGAGCATTGGTG : TTTGTCCTACCACTCTGAAGAGGATATGCAGGCAGCACGGAATTAAACGCTGGCCTTCTCGAAAGATCAAGAAGGTTGGTCACTCCTTACAAAAAATCCAACGTGTTATTGATTCAGTTCAGGGTGCCTCTGGCACTTTACAAATTGAATCCTTCTATTCAAACTTCCCAGAGTTGGCGTCTCCGAATGCATCAAGAATGAGCCCTTTTGCAGACTCAAAGTCAAATGAACATCCAACAGCCTTGAACACACAACAAGAGAGATGCATTACGAGCCCCAATCCTGATGCATCTAAGTCACCCTCTTCTTCCAGCAGTCGAAGTTCAAGTTCAAGTCAATGTTGTTCATCCGGGACAAAACCTCAATCGCCTCAATCTCACCCTTTGAGTATTGTTGGCGATGAAGATCTAATCGTACAGGAAGAGTCTGTAGATAATGCAGTGAAAAGGGTTAAAAGTGAACCAGAGCTTCATTTATCAAGTGAAGCACTGAAGACTATACCAAGATCTCAAAGCCATTTATGTGTTGCTGAGAATCCTATATCAGAAAACCTTGTATTGAAGAGGAGTCCATCAACATCTCAAGAAGAAGCTCCACGAGTAAAAGTAACACATGGAGAAGAAAAGATTAGGTTCCGAATGCAAAACAGTTGGAGATACAATGATCTTCTAAGAGAAATTACAAGGCGGTTTGGCATAGATGATCCTAGTGGACTTCAACTCAAGTACTTGGACGATGACTCCGAGTGGGTTCTATTAACATGCGATGCAGACTTGGAAGAATGCATCGATGTTTGTATGTCTTCCCAAATCCAAATGATCAAGCTCATCTTAGTTCAAGATTCACAGCATCATTTTGGAAGCTCTTTCGGTAGCAGCAGTCCTATATTAGTACAGTAACCAACTGGTATACCCCCTAGTTGCCAAAATGGATATAGTTCCCTTTTAGGATTAGATTTGGTATGAGACTTGAAGAAATGTTGCTTGCTTAATTGTAAATTCATTCTGTTTGAGTCTTCATGTAAGTCAATCCTTTTGACTGATATGAACTAGTATTGAGCCGTAAGGCTATTATTGTTTCATCTAGAGTACTCAAAACTCATTATAGTTTCAAAGTTTAATAATTTGTTGAAATTTTA</gDNA_template>
            <first_frame> A  D  L  T  S  Y  S  K  S  E  Y  P  L  S  H  Y  A  K  M  F  G  L  Q  A  A  V  A  I  R  L  R  S  I  S  T  G  S  S  D  F  V  L  E  F  F  L  P  S  D  C  R  N  P  E  D  H  R  K  M  L  T  S  L  S  I  I  I  Q  N  V  C  R  T  L  R  V  V  T  D  K  E  L  Q  E  E  T  I  S  V  G  E  M  A  N  H  T  V  E  Q  H  K  E  H  T  E  T  S  Q  E  R  T  S  W  T  S  C  D  A  E  F  Q  E  S  S  V  M  S  T  F  Q  D  E  K  P  D  E  M  L  R  K  D  S  V  E  F  R  H  R  K  N  S  A  Y  E  E  G  V  S  R  N  L  G  K  T  G  D  R  R  R  A  K  A  E  K  T  I  T  L  Q  V  L  Q  Q  Y  F  A  G  S  L  K  D  A  A  K  S  I  G   : V  C  P  T  T  L  K  R  I  C  R  Q  H  G  I  K  R  W  P  S  R  K  I  K  K  V  G  H  S  L  Q  K  I  Q  R  V  I  D  S  V  Q  G  A  S  G  T  L  Q  I  E  S  F  Y  S  N  F  P  E  L  A  S  P  N  A  S  R  M  S  P  F  A  D  S  K  S  N  E  H  P  T  A  L  N  T  Q  Q  E  R  C  I  T  S  P  N  P  D  A  S  K  S  P  S  S  S  S  S  R  S  S  S  S  S  Q  C  C  S  S  G  T  K  P  Q  S  P  Q  S  H  P  L  S  I  V  G  D  E  D  L  I  V  Q  E  E  S  V  D  N  A  V  K  R  V  K  S  E  P  E  L  H  L  S  S  E  A  L  K  T  I  P  R  S  Q  S  H  L  C  V  A  E  N  P  I  S  E  N  L  V  L  K  R  S  P  S  T  S  Q  E  E  A  P  R  V  K  V  T  H  G  E  E  K  I  R  F  R  M  Q  N  S  W  R  Y  N  D  L  L  R  E  I  T  R  R  F  G  I  D  D  P  S  G  L  Q  L  K  Y  L  D  D  D  S  E  W  V  L  L  T  C  D  A  D  L  E  E  C  I  D  V  C  M  S  S  Q  I  Q  M  I  K  L  I  L  V  Q  D  S  Q  H  H  F  G  S  S  F  G  S  S  S  P  I  L  V  Q  *  P  T  G  I  P  P  S  C  Q  N  G  Y  S  S  L  L  G  L  D  L  V  *  D  L  K  K  C  C  L  L  N  C  K  F  I  L  F  E  S  S  C  K  S  I  L  L  T  D  M  N  *  Y  *  A  V  R  L  L  L  F  H  L  E  Y  S  K  L  I  I  V  S  K  F  N  N  L  L  K  F   </first_frame>
            <second_frame>  L  I  *  P  L  I  A  S  Q  S  I  H  F  L  I  M  Q  K  C  L  D  C  K  L  Q  *  L  Y  V  Y  V  V  S  Q  L  V  H  L  I  L  F  W  S  S  F  Y  P  Q  T  A  E  I  L  K  T  I  E  K  C  L  L  H  Y  P  S  S  Y  K  M  F  A  G  H  *  G  L  *  Q  I  K  S  C  R  K  K  L  Y  L  W  E  K  W  Q  T  T  Q  L  N  N  I  R  S  T  L  K  P  L  K  K  G  H  R  G  P  L  V  T  Q  S  S  R  R  V  L  L  C  L  H  S  R  M  K  N  Q  M  K  C  *  G  K  I  R  W  S  L  G  T  V  R  I  L  L  M  R  R  V  S  L  V  I  W  V  K  R  E  T  G  D  V  R  R  L  R  R  L  L  P  C  K  F  F  S  S  I  L  L  V  A  *  K  M  L  Q  R  A  L  V  :  F  V  L  P  L  *  R  G  Y  A  G  S  T  E  L  N  A  G  L  L  E  R  S  R  R  L  V  T  P  Y  K  K  S  N  V  L  L  I  Q  F  R  V  P  L  A  L  Y  K  L  N  P  S  I  Q  T  S  Q  S  W  R  L  R  M  H  Q  E  *  A  L  L  Q  T  Q  S  Q  M  N  I  Q  Q  P  *  T  H  N  K  R  D  A  L  R  A  P  I  L  M  H  L  S  H  P  L  L  P  A  V  E  V  Q  V  Q  V  N  V  V  H  P  G  Q  N  L  N  R  L  N  L  T  L  *  V  L  L  A  M  K  I  *  S  Y  R  K  S  L  *  I  M  Q  *  K  G  L  K  V  N  Q  S  F  I  Y  Q  V  K  H  *  R  L  Y  Q  D  L  K  A  I  Y  V  L  L  R  I  L  Y  Q  K  T  L  Y  *  R  G  V  H  Q  H  L  K  K  K  L  H  E  *  K  *  H  M  E  K  K  R  L  G  S  E  C  K  T  V  G  D  T  M  I  F  *  E  K  L  Q  G  G  L  A  *  M  I  L  V  D  F  N  S  S  T  W  T  M  T  P  S  G  F  Y  *  H  A  M  Q  T  W  K  N  A  S  M  F  V  C  L  P  K  S  K  *  S  S  S  S  *  F  K  I  H  S  I  I  L  E  A  L  S  V  A  A  V  L  Y  *  Y  S  N  Q  L  V  Y  P  L  V  A  K  M  D  I  V  P  F  *  D  *  I  W  Y  E  T  *  R  N  V  A  C  L  I  V  N  S  F  C  L  S  L  H  V  S  Q  S  F  *  L  I  *  T  S  I  E  P  *  G  Y  Y  C  F  I  *  S  T  Q  N  S  L  *  F  Q  S  L  I  I  C  *  N  F  </second_frame>
            <third_frame>   *  S  N  L  L  *  Q  V  R  V  S  T  F  S  L  C  K  N  V  W  T  A  S  C  S  S  Y  T  S  T  *  Y  L  N  W  F  I  *  F  C  F  G  V  L  S  T  L  R  L  Q  K  S  *  R  P  *  K  N  A  Y  F  I  I  H  H  H  T  K  C  L  P  D  I  E  G  C  D  R  *  R  V  A  G  R  N  Y  I  C  G  R  N  G  K  P  H  S  *  T  T  *  G  A  H  *  N  L  S  R  K  D  I  V  D  L  L  *  R  R  V  P  G  E  F  C  Y  V  Y  I  P  G  *  K  T  R  *  N  A  K  E  R  F  G  G  V  *  A  P  *  E  F  C  L  *  G  G  C  L  S  *  S  G  *  N  G  R  Q  E  T  C  E  G  *  E  D  Y  Y  L  A  S  S  S  A  V  F  C  W  *  P  K  R  C  C  K  E  H  W  C :   L  S  Y  H  S  E  E  D  M  Q  A  A  R  N  *  T  L  A  F  S  K  D  Q  E  G  W  S  L  L  T  K  N  P  T  C  Y  *  F  S  S  G  C  L  W  H  F  T  N  *  I  L  L  F  K  L  P  R  V  G  V  S  E  C  I  K  N  E  P  F  C  R  L  K  V  K  *  T  S  N  S  L  E  H  T  T  R  E  M  H  Y  E  P  Q  S  *  C  I  *  V  T  L  F  F  Q  Q  S  K  F  K  F  K  S  M  L  F  I  R  D  K  T  S  I  A  S  I  S  P  F  E  Y  C  W  R  *  R  S  N  R  T  G  R  V  C  R  *  C  S  E  K  G  *  K  *  T  R  A  S  F  I  K  *  S  T  E  D  Y  T  K  I  S  K  P  F  M  C  C  *  E  S  Y  I  R  K  P  C  I  E  E  E  S  I  N  I  S  R  R  S  S  T  S  K  S  N  T  W  R  R  K  D  *  V  P  N  A  K  Q  L  E  I  Q  *  S  S  K  R  N  Y  K  A  V  W  H  R  *  S  *  W  T  S  T  Q  V  L  G  R  *  L  R  V  G  S  I  N  M  R  C  R  L  G  R  M  H  R  C  L  Y  V  F  P  N  P  N  D  Q  A  H  L  S  S  R  F  T  A  S  F  W  K  L  F  R  *  Q  Q  S  Y  I  S  T  V  T  N  W  Y  T  P  *  L  P  K  W  I  *  F  P  F  R  I  R  F  G  M  R  L  E  E  M  L  L  A  *  L  *  I  H  S  V  *  V  F  M  *  V  N  P  F  D  *  Y  E  L  V  L  S  R  K  A  I  I  V  S  S  R  V  L  K  T  H  Y  S  F  K  V  *  *  F  V  E  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0068N05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10381" stop="10972"/>
                    <exon start="11425" stop="12323"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1488</number_coding_nucleotides>
                  <number_encoded_amino_acids>496</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADLTSYSKSEYPLSHYAKMFGLQAAVAIRLRSISTGSSDFVLEFFLPSDCRNPEDHRKMLTSLSIIIQNVCRTLRVVTDKELQEETISVGEMANHTVEQHKEHTETSQERTSWTSCDAEFQESSVMSTFQDEKPDEMLRKDSVEFRHRKNSAYEEGVSRNLGKTGDRRRAKAEKTITLQVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKVGHSLQKIQRVIDSVQGASGTLQIESFYSNFPELASPNASRMSPFADSKSNEHPTALNTQQERCITSPNPDASKSPSSSSSRSSSSSQCCSSGTKPQSPQSHPLSIVGDEDLIVQEESVDNAVKRVKSEPELHLSSEALKTIPRSQSHLCVAENPISENLVLKRSPSTSQEEAPRVKVTHGEEKIRFRMQNSWRYNDLLREITRRFGIDDPSGLQLKYLDDDSEWVLLTCDADLEECIDVCMSSQIQMIKLILVQDSQHHFGSSFGSSSPILVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12506" PGL_stop="11819"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12506" e_stop="11819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="12506" e_stop="11819" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12506" stop="11819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433500" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAAACAATAATAGCCTTACGGCTCAATACTAGTTCATATCAGTCAAAAGGATTGACTTACATGAAGACTCAAACAGAATGAATTTACAATTAAGCAAGCAACATTTCTTCAAGTCTCATACCAAATCTAATCCTAAAAGGGAACTATATCCATTTTGGCAACTAGGGGGTATACCAGTTGGTTACTGTACTAATATAGGACTGCTGCTACCGAAAGAGCTTCCAAAATGATGCTGTGAATCTTGAACTAAGATGAGCTTGATCATTTGGATTTGGGAAGACATACAAACATCGATGCATTCTTCCAAGTCTGCATCGCATGTTAATAGAACCCACTCGGAGTCATCGTCCAAGTACTTGAGTTGAAGTCCACTAGGATCATCTATGCCAAACCGCCTTGTAATTTCTCTTAGAAGATCATTGTATCTCCAACTGTTTTGCATTCGGAACCTAATCTTTTCTTCTCCATGTGTTACTTTTACTCGTGGAGCTTCTTCTTGAGATGTTGATGGACTCCTCTTCAATACAAGGTTTTCTGATATAGGATTCTCAGCAACACATAAATGGCTTTGAGATCTTGGTATAGTCTTCAGTGCTTCACTTGATAAATGAAGCTCTGGTTCACTTTTAACCCTTTTCACTGCATTATCTACAGACTCTTCCTGTACGATTAGATCTTCATCGCCA</gDNA_template>
            <first_frame> M  K  Q  *  *  P  Y  G  S  I  L  V  H  I  S  Q  K  D  *  L  T  *  R  L  K  Q  N  E  F  T  I  K  Q  A  T  F  L  Q  V  S  Y  Q  I  *  S  *  K  G  T  I  S  I  L  A  T  R  G  Y  T  S  W  L  L  Y  *  Y  R  T  A  A  T  E  R  A  S  K  M  M  L  *  I  L  N  *  D  E  L  D  H  L  D  L  G  R  H  T  N  I  D  A  F  F  Q  V  C  I  A  C  *  *  N  P  L  G  V  I  V  Q  V  L  E  L  K  S  T  R  I  I  Y  A  K  P  P  C  N  F  S  *  K  I  I  V  S  P  T  V  L  H  S  E  P  N  L  F  F  S  M  C  Y  F  Y  S  W  S  F  F  L  R  C  *  W  T  P  L  Q  Y  K  V  F  *  Y  R  I  L  S  N  T  *  M  A  L  R  S  W  Y  S  L  Q  C  F  T  *  *  M  K  L  W  F  T  F  N  P  F  H  C  I  I  Y  R  L  F  L  Y  D  *  I  F  I  A  </first_frame>
            <second_frame>  *  N  N  N  S  L  T  A  Q  Y  *  F  I  S  V  K  R  I  D  L  H  E  D  S  N  R  M  N  L  Q  L  S  K  Q  H  F  F  K  S  H  T  K  S  N  P  K  R  E  L  Y  P  F  W  Q  L  G  G  I  P  V  G  Y  C  T  N  I  G  L  L  L  P  K  E  L  P  K  *  C  C  E  S  *  T  K  M  S  L  I  I  W  I  W  E  D  I  Q  T  S  M  H  S  S  K  S  A  S  H  V  N  R  T  H  S  E  S  S  S  K  Y  L  S  *  S  P  L  G  S  S  M  P  N  R  L  V  I  S  L  R  R  S  L  Y  L  Q  L  F  C  I  R  N  L  I  F  S  S  P  C  V  T  F  T  R  G  A  S  S  *  D  V  D  G  L  L  F  N  T  R  F  S  D  I  G  F  S  A  T  H  K  W  L  *  D  L  G  I  V  F  S  A  S  L  D  K  *  S  S  G  S  L  L  T  L  F  T  A  L  S  T  D  S  S  C  T  I  R  S  S  S  P </second_frame>
            <third_frame>   E  T  I  I  A  L  R  L  N  T  S  S  Y  Q  S  K  G  L  T  Y  M  K  T  Q  T  E  *  I  Y  N  *  A  S  N  I  S  S  S  L  I  P  N  L  I  L  K  G  N  Y  I  H  F  G  N  *  G  V  Y  Q  L  V  T  V  L  I  *  D  C  C  Y  R  K  S  F  Q  N  D  A  V  N  L  E  L  R  *  A  *  S  F  G  F  G  K  T  Y  K  H  R  C  I  L  P  S  L  H  R  M  L  I  E  P  T  R  S  H  R  P  S  T  *  V  E  V  H  *  D  H  L  C  Q  T  A  L  *  F  L  L  E  D  H  C  I  S  N  C  F  A  F  G  T  *  S  F  L  L  H  V  L  L  L  L  V  E  L  L  L  E  M  L  M  D  S  S  S  I  Q  G  F  L  I  *  D  S  Q  Q  H  I  N  G  F  E  I  L  V  *  S  S  V  L  H  L  I  N  E  A  L  V  H  F  *  P  F  S  L  H  Y  L  Q  T  L  P  V  R  L  D  L  H  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0068N05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12472" stop="12275"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FISVKRIDLHEDSNRMNLQLSKQHFFKSHTKSNPKRELYPFWQLGGIPVGYCTNIGLLLPKELPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17056" PGL_stop="12878"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17056" e_stop="17008"/>
            <exon e_start="16919" e_stop="16854"/>
            <exon e_start="16024" e_stop="15931"/>
            <exon e_start="15729" e_stop="15693"/>
            <exon e_start="15568" e_stop="15511"/>
            <exon e_start="15421" e_stop="15311"/>
            <exon e_start="14834" e_stop="14767"/>
            <exon e_start="14002" e_stop="13936"/>
            <exon e_start="13856" e_stop="13788"/>
            <exon e_start="13318" e_stop="12878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.364" e_score="1.000"/>
          <exon-intron don_prob="0.562" acc_prob="0.701" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.674" acc_prob="0.405" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.627" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17056" e_stop="17008" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="17007" i_stop="16920" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16919" e_stop="16854" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.940" acc_prob="0.863">
            <gDNA_intron_boundary i_start="16853" i_stop="16025" i_length="829"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16024" e_stop="15931" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.848" acc_prob="0.364">
            <gDNA_intron_boundary i_start="15930" i_stop="15730" i_length="201"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15729" e_stop="15693" e_length="37"/>
          </exon>
          <intron i_serial="4" don_prob="0.562" acc_prob="0.701">
            <gDNA_intron_boundary i_start="15692" i_stop="15569" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15568" e_stop="15511" e_length="58"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="15510" i_stop="15422" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15421" e_stop="15311" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.977" acc_prob="0.996">
            <gDNA_intron_boundary i_start="15310" i_stop="14835" i_length="476"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14834" e_stop="14767" e_length="68"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.972">
            <gDNA_intron_boundary i_start="14766" i_stop="14003" i_length="764"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="14002" e_stop="13936" e_length="67"/>
          </exon>
          <intron i_serial="8" don_prob="0.674" acc_prob="0.405">
            <gDNA_intron_boundary i_start="13935" i_stop="13857" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="13856" e_stop="13788" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.968" acc_prob="0.627">
            <gDNA_intron_boundary i_start="13787" i_stop="13319" i_length="469"/>
          </intron>
          <exon e_serial="10" e_score="0.993">
            <gDNA_exon_boundary e_start="13318" e_stop="12878" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17056" stop="17008"/>
              <exon start="16919" stop="16854"/>
              <exon start="16024" stop="15931"/>
              <exon start="15729" stop="15693"/>
              <exon start="15568" stop="15511"/>
              <exon start="15421" stop="15311"/>
              <exon start="14834" stop="14767"/>
              <exon start="14002" stop="13936"/>
              <exon start="13856" stop="13788"/>
              <exon start="13318" stop="13195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17055" stop="17008"/>
              <exon start="16919" stop="16854"/>
              <exon start="16024" stop="15931"/>
              <exon start="15729" stop="15693"/>
              <exon start="15568" stop="15511"/>
              <exon start="15421" stop="15311"/>
              <exon start="14834" stop="14767"/>
              <exon start="14002" stop="13936"/>
              <exon start="13856" stop="13788"/>
              <exon start="13318" stop="13271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296470" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17055" stop="17008"/>
              <exon start="16919" stop="16854"/>
              <exon start="16024" stop="15931"/>
              <exon start="15729" stop="15693"/>
              <exon start="15568" stop="15511"/>
              <exon start="15421" stop="15311"/>
              <exon start="14834" stop="14767"/>
              <exon start="14002" stop="13936"/>
              <exon start="13856" stop="13788"/>
              <exon start="13318" stop="13271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17012" stop="17008"/>
              <exon start="16919" stop="16854"/>
              <exon start="16024" stop="15931"/>
              <exon start="15729" stop="15693"/>
              <exon start="15568" stop="15511"/>
              <exon start="15421" stop="15311"/>
              <exon start="14834" stop="14767"/>
              <exon start="14002" stop="13936"/>
              <exon start="13856" stop="13788"/>
              <exon start="13318" stop="13235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15524" stop="15511"/>
              <exon start="15421" stop="15311"/>
              <exon start="14834" stop="14767"/>
              <exon start="14002" stop="13936"/>
              <exon start="13856" stop="13788"/>
              <exon start="13318" stop="12878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15335" stop="15311"/>
              <exon start="14834" stop="14767"/>
              <exon start="14002" stop="13936"/>
              <exon start="13856" stop="13788"/>
              <exon start="13318" stop="12878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14834" stop="14767"/>
              <exon start="14002" stop="13936"/>
              <exon start="13856" stop="13788"/>
              <exon start="13318" stop="12911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623043" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14834" stop="14767"/>
              <exon start="14002" stop="13936"/>
              <exon start="13856" stop="13788"/>
              <exon start="13318" stop="12911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14834" stop="14767"/>
              <exon start="14002" stop="13936"/>
              <exon start="13856" stop="13788"/>
              <exon start="13318" stop="12911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14834" stop="14767"/>
              <exon start="14002" stop="13936"/>
              <exon start="13856" stop="13788"/>
              <exon start="13318" stop="12991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14834" stop="14767"/>
              <exon start="14002" stop="13936"/>
              <exon start="13856" stop="13788"/>
              <exon start="13318" stop="13008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14834" stop="14767"/>
              <exon start="14002" stop="13936"/>
              <exon start="13856" stop="13788"/>
              <exon start="13318" stop="13301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13224" stop="12878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309669" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTAAAGCATCAGCCTTTCGTACATATCACACACCTCTTAACAAACAG : GTTGACTATGTCAATTCTATGAGAGCTGCACGAGAATTCAGTTCAAGGGTTTCTGATTCTCTAAAG : ATGGAGGTCTTCCCGTATGCAGTGTTTTATATGTTCTTTGAGCAATATTTAAGCATATGGAGGACAGCCCTAATTAACTTAGCGATTGCTATTG : GTGCCGTATTTATTGTATGCTTAGTTATCACTTGTAG : TTTTTGGACTTCAGCAATTATCTTGCTCGTGCTGACCATGATTGTTCTGGATCTTATG : GGAGTAATGGCAATTCTAAAAATCCAGCTCAATGCTGTATCAGTTGTTAACCTTGTGATGGCCGTTGGTATTGCTGTTGAATTCTGTGTCCATATAACACATGCCTTCTTG : GTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCACTGACTACTATGGGCGCTTCTGTATTCAG : TGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTCTCAAGGACAGAAGTTTTTGTG : GTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTTCTTGGTTTTCTACATGGGCTCATATTTTTACCT : GTACTATTAAGCATTTTTGGTCCGCCATCAAGATGTGTGCTTGTAGAGAAGCAAGAGGATCGTCCATCTACATCTTCCCAATTCTAATCTAATCAGGTGTTAAAAGAGTCTCCTCGGTAGGAAATATATTCTTTTTGTTCAGAAGCCACGACTTGATGTTTGATCCATGAGATAACAAGCAGGATAATTGGTGGTCTACCTACAGCACAATTCTGATACAAGCTAATGCATTAAAAAGAGCTGTCCTTTGTAGTGATACATAATCTTTTCTTTTTCTCTAGATTTTGTGGGTAGTAGAGGGAGCCCTTGAATGTTCATGGCTGCATGTATAACCTTCTGAAGAACACATCAGAATAGTTTTGTTAATTGTAAATTTATACAATTATATTTCTCTGTAAAAGAAGAAAGGTATATATACATATCTTTTGTTTCTCAGTCCTC</gDNA_template>
            <first_frame> N  *  S  I  S  L  S  Y  I  S  H  T  S  *  Q  T   : G  *  L  C  Q  F  Y  E  S  C  T  R  I  Q  F  K  G  F  *  F  S  K   : D  G  G  L  P  V  C  S  V  L  Y  V  L  *  A  I  F  K  H  M  E  D  S  P  N  *  L  S  D  C  Y  W :   C  R  I  Y  C  M  L  S  Y  H  L  *  :  F  L  D  F  S  N  Y  L  A  R  A  D  H  D  C  S  G  S  Y   : G  S  N  G  N  S  K  N  P  A  Q  C  C  I  S  C  *  P  C  D  G  R  W  Y  C  C  *  I  L  C  P  Y  N  T  C  L  L   : G  *  Q  W  R  *  K  P  T  H  E  G  G  T  D  Y  Y  G  R  F  C  I  Q  :  W  Y  H  A  Y  K  A  C  R  C  H  C  S  L  F  L  K  D  R  S  F  C   : G  L  L  L  S  N  V  P  G  F  G  S  S  W  F  S  T  W  A  H  I  F  T   : C  T  I  K  H  F  W  S  A  I  K  M  C  A  C  R  E  A  R  G  S  S  I  Y  I  F  P  I  L  I  *  S  G  V  K  R  V  S  S  V  G  N  I  F  F  L  F  R  S  H  D  L  M  F  D  P  *  D  N  K  Q  D  N  W  W  S  T  Y  S  T  I  L  I  Q  A  N  A  L  K  R  A  V  L  C  S  D  T  *  S  F  L  F  L  *  I  L  W  V  V  E  G  A  L  E  C  S  W  L  H  V  *  P  S  E  E  H  I  R  I  V  L  L  I  V  N  L  Y  N  Y  I  S  L  *  K  K  K  G  I  Y  T  Y  L  L  F  L  S  P  </first_frame>
            <second_frame>  I  K  A  S  A  F  R  T  Y  H  T  P  L  N  K  Q  :  V  D  Y  V  N  S  M  R  A  A  R  E  F  S  S  R  V  S  D  S  L  K  :  M  E  V  F  P  Y  A  V  F  Y  M  F  F  E  Q  Y  L  S  I  W  R  T  A  L  I  N  L  A  I  A  I   : G  A  V  F  I  V  C  L  V  I  T  C  S :   F  W  T  S  A  I  I  L  L  V  L  T  M  I  V  L  D  L  M  :  G  V  M  A  I  L  K  I  Q  L  N  A  V  S  V  V  N  L  V  M  A  V  G  I  A  V  E  F  C  V  H  I  T  H  A  F  L  :  V  S  S  G  D  R  N  Q  R  M  K  E  A  L  T  T  M  G  A  S  V  F  S :   G  I  T  L  T  K  L  V  G  V  I  V  L  C  F  S  R  T  E  V  F  V  :  V  Y  Y  F  Q  M  Y  L  A  L  V  L  L  G  F  L  H  G  L  I  F  L  P  :  V  L  L  S  I  F  G  P  P  S  R  C  V  L  V  E  K  Q  E  D  R  P  S  T  S  S  Q  F  *  S  N  Q  V  L  K  E  S  P  R  *  E  I  Y  S  F  C  S  E  A  T  T  *  C  L  I  H  E  I  T  S  R  I  I  G  G  L  P  T  A  Q  F  *  Y  K  L  M  H  *  K  E  L  S  F  V  V  I  H  N  L  F  F  F  S  R  F  C  G  *  *  R  E  P  L  N  V  H  G  C  M  Y  N  L  L  K  N  T  S  E  *  F  C  *  L  *  I  Y  T  I  I  F  L  C  K  R  R  K  V  Y  I  H  I  F  C  F  S  V  L </second_frame>
            <third_frame>   L  K  H  Q  P  F  V  H  I  T  H  L  L  T  N  R :   L  T  M  S  I  L  *  E  L  H  E  N  S  V  Q  G  F  L  I  L  *  R :   W  R  S  S  R  M  Q  C  F  I  C  S  L  S  N  I  *  A  Y  G  G  Q  P  *  L  T  *  R  L  L  L  :  V  P  Y  L  L  Y  A  *  L  S  L  V   : V  F  G  L  Q  Q  L  S  C  S  C  *  P  *  L  F  W  I  L  W :   E  *  W  Q  F  *  K  S  S  S  M  L  Y  Q  L  L  T  L  *  W  P  L  V  L  L  L  N  S  V  S  I  *  H  M  P  S  W :   L  A  V  E  I  E  T  N  A  *  R  R  H  *  L  L  W  A  L  L  Y  S   : V  V  S  R  L  Q  S  L  S  V  S  L  F  F  V  S  Q  G  Q  K  F  L  W :   F  T  T  F  K  C  T  W  L  W  F  F  L  V  F  Y  M  G  S  Y  F  Y  L :   Y  Y  *  A  F  L  V  R  H  Q  D  V  C  L  *  R  S  K  R  I  V  H  L  H  L  P  N  S  N  L  I  R  C  *  K  S  L  L  G  R  K  Y  I  L  F  V  Q  K  P  R  L  D  V  *  S  M  R  *  Q  A  G  *  L  V  V  Y  L  Q  H  N  S  D  T  S  *  C  I  K  K  S  C  P  L  *  *  Y  I  I  F  S  F  S  L  D  F  V  G  S  R  G  S  P  *  M  F  M  A  A  C  I  T  F  *  R  T  H  Q  N  S  F  V  N  C  K  F  I  Q  L  Y  F  S  V  K  E  E  R  Y  I  Y  I  S  F  V  S  Q  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0068N05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17055" stop="17008"/>
                    <exon start="16919" stop="16854"/>
                    <exon start="16024" stop="15931"/>
                    <exon start="15729" stop="15693"/>
                    <exon start="15568" stop="15511"/>
                    <exon start="15421" stop="15311"/>
                    <exon start="14834" stop="14767"/>
                    <exon start="14002" stop="13936"/>
                    <exon start="13856" stop="13788"/>
                    <exon start="13318" stop="13232"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKASAFRTYHTPLNKQVDYVNSMRAAREFSSRVSDSLKMEVFPYAVFYMFFEQYLSIWRTALINLAIAIGAVFIVCLVITCSFWTSAIILLVLTMIVLDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFLVSSGDRNQRMKEALTTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLIFLPVLLSIFGPPSRCVLVEKQEDRPSTSSQF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="44932" PGL_stop="41033"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44910" e_stop="44731"/>
            <exon e_start="44312" e_stop="43978"/>
            <exon e_start="42391" e_stop="42256"/>
            <exon e_start="42165" e_stop="42026"/>
            <exon e_start="41923" e_stop="41800"/>
            <exon e_start="41319" e_stop="41033"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.687" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44910" e_stop="44731" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.687">
            <gDNA_intron_boundary i_start="44730" i_stop="44313" i_length="418"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44312" e_stop="43978" e_length="335"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43977" i_stop="42392" i_length="1586"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42391" e_stop="42256" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="42255" i_stop="42166" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42165" e_stop="42026" e_length="140"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42025" i_stop="41924" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41923" e_stop="41800" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41799" i_stop="41320" i_length="480"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="41319" e_stop="41033" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44910" stop="44731"/>
              <exon start="44312" stop="43982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44909" stop="44731"/>
              <exon start="44312" stop="44010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44908" stop="44731"/>
              <exon start="44312" stop="43978"/>
              <exon start="42391" stop="42306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44818" stop="44731"/>
              <exon start="44312" stop="43978"/>
              <exon start="42391" stop="42256"/>
              <exon start="42165" stop="42144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44801" stop="44731"/>
              <exon start="44312" stop="43978"/>
              <exon start="42391" stop="42258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44295" stop="43978"/>
              <exon start="42391" stop="42256"/>
              <exon start="42165" stop="42026"/>
              <exon start="41923" stop="41868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42134" stop="42026"/>
              <exon start="41923" stop="41800"/>
              <exon start="41319" stop="41033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308670" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAATTAACACACTCCACAACCACAAGAAAACTATCACCTATTCTTATTTATTATTATTATTTAGAAGCAACAACACAAACTACTTCTCCCAAAAATATTATTACAACAGAAATAATGGGAAATTGTTGGCCAAAACCTGTGGATGTTGTTCCTCCCACCTCTAATACTCCTCCTCCAG : TGATCATGAAGAAACCAATTAATACATCTCCGGGAAGTAACACAAGGAGTGTGGTGGCGCAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACGCCAAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATGCAGACAGTGAACAAGGTCTTAAAGAATGGCAG : GCTGAAGTAAAGTTTTTGGGAAAACTTAGCCACCCAAATTTAGTAAAACTAATTGGATATTGTTGGGAAGACAAAACATTTCTTCTAGTCTATGAGCACATGCAAAAAGGGAGCTTAGAAAGTCATCTTTTCAGAA : CAGAAGGCGCTGAAGCATTGTCATGGGGTACAAGGCTGAAAATAGCAATCGGAGCAGCGAAGGGACTTGATTTCTTACACACCATAGAAAAACAAGTTATTTACCGCGATTTTAAAACGGCCAATATTTTACTGGACTCG : GACTATAATGCAAAGCTTTCAGATTTTGGACTAGCAAAAATGGGTCCAGTAAATGGAGACTCACATGTGACCACTAAAATAGTTGGTACTTATGGCTATGCTGCACCTGAGTACATGGCCACTG : GTCATGTATACGTAAAGAGCGACGTATACGGGTTCGGAGTCGTGTTACTCGAAATCCTTTCGGGCCGTAGAGTACTGGATCTTAACAGGCCCAATGGAGAACATAATTTAGTAGATTGGGCCAAGCCCATGTTGCCTGACAAAAAGAAGCTAAGGAAATTAATGGACCCAAGACTGGAGGCCCAATACCCATCAAAGGCTGCATTTCAAATAGCTGAAATTATATTAAGATGCCTTGAACCTGATCCAAAAAATAGACCTTCCATGGAAGAAATTTTGGAATGTTTG</gDNA_template>
            <first_frame> R  N  *  H  T  P  Q  P  Q  E  N  Y  H  L  F  L  F  I  I  I  I  *  K  Q  Q  H  K  L  L  L  P  K  I  L  L  Q  Q  K  *  W  E  I  V  G  Q  N  L  W  M  L  F  L  P  P  L  I  L  L  L  Q  :  *  S  *  R  N  Q  L  I  H  L  R  E  V  T  Q  G  V  W  W  R  S  L  A  E  M  A  V  I  R  G  K  W  K  F  R  L  A  E  K  *  L  R  Q  I  *  K  C  L  R  *  R  N  *  R  A  R  R  V  I  F  G  P  I  R  C  *  V  R  E  D  L  V  Q  Y  L  K  D  G  S  M  T  K  H  L  H  L  L  E  L  E  L  V  C  L  L  L  L  K  N  Q  M  Q  T  V  N  K  V  L  K  N  G  R :   L  K  *  S  F  W  E  N  L  A  T  Q  I  *  *  N  *  L  D  I  V  G  K  T  K  H  F  F  *  S  M  S  T  C  K  K  G  A  *  K  V  I  F  S  E  :  Q  K  A  L  K  H  C  H  G  V  Q  G  *  K  *  Q  S  E  Q  R  R  D  L  I  S  Y  T  P  *  K  N  K  L  F  T  A  I  L  K  R  P  I  F  Y  W  T  R :   T  I  M  Q  S  F  Q  I  L  D  *  Q  K  W  V  Q  *  M  E  T  H  M  *  P  L  K  *  L  V  L  M  A  M  L  H  L  S  T  W  P  L  :  V  M  Y  T  *  R  A  T  Y  T  G  S  E  S  C  Y  S  K  S  F  R  A  V  E  Y  W  I  L  T  G  P  M  E  N  I  I  *  *  I  G  P  S  P  C  C  L  T  K  R  S  *  G  N  *  W  T  Q  D  W  R  P  N  T  H  Q  R  L  H  F  K  *  L  K  L  Y  *  D  A  L  N  L  I  Q  K  I  D  L  P  W  K  K  F  W  N  V   </first_frame>
            <second_frame>  E  I  N  T  L  H  N  H  K  K  T  I  T  Y  S  Y  L  L  L  L  F  R  S  N  N  T  N  Y  F  S  Q  K  Y  Y  Y  N  R  N  N  G  K  L  L  A  K  T  C  G  C  C  S  S  H  L  *  Y  S  S  S  S :   D  H  E  E  T  N  *  Y  I  S  G  K  *  H  K  E  C  G  G  A  A  *  R  R  W  R  *  F  E  E  N  G  S  S  G  *  R  K  N  N  Y  A  K  F  K  N  V  Y  A  S  G  I  K  E  R  D  A  *  F  S  A  R  Y  G  A  R  *  G  R  I  W  Y  S  I  *  R  M  G  R  *  Q  N  I  C  T  F  *  S  W  S  W  Y  A  C  C  C  *  K  I  K  C  R  Q  *  T  R  S  *  R  M  A   : G  *  S  K  V  F  G  K  T  *  P  P  K  F  S  K  T  N  W  I  L  L  G  R  Q  N  I  S  S  S  L  *  A  H  A  K  R  E  L  R  K  S  S  F  Q  N :   R  R  R  *  S  I  V  M  G  Y  K  A  E  N  S  N  R  S  S  E  G  T  *  F  L  T  H  H  R  K  T  S  Y  L  P  R  F  *  N  G  Q  Y  F  T  G  L   : G  L  *  C  K  A  F  R  F  W  T  S  K  N  G  S  S  K  W  R  L  T  C  D  H  *  N  S  W  Y  L  W  L  C  C  T  *  V  H  G  H  W :   S  C  I  R  K  E  R  R  I  R  V  R  S  R  V  T  R  N  P  F  G  P  *  S  T  G  S  *  Q  A  Q  W  R  T  *  F  S  R  L  G  Q  A  H  V  A  *  Q  K  E  A  K  E  I  N  G  P  K  T  G  G  P  I  P  I  K  G  C  I  S  N  S  *  N  Y  I  K  M  P  *  T  *  S  K  K  *  T  F  H  G  R  N  F  G  M  F  </second_frame>
            <third_frame>   K  L  T  H  S  T  T  T  R  K  L  S  P  I  L  I  Y  Y  Y  Y  L  E  A  T  T  Q  T  T  S  P  K  N  I  I  T  T  E  I  M  G  N  C  W  P  K  P  V  D  V  V  P  P  T  S  N  T  P  P  P   : V  I  M  K  K  P  I  N  T  S  P  G  S  N  T  R  S  V  V  A  Q  P  S  G  D  G  G  D  S  R  K  M  E  V  P  A  S  G  K  I  I  T  P  N  L  K  M  F  T  L  A  E  L  K  S  A  T  R  N  F  R  P  D  T  V  L  G  E  G  G  F  G  T  V  F  K  G  W  V  D  D  K  T  F  A  P  S  R  V  G  V  G  M  P  V  A  V  K  K  S  N  A  D  S  E  Q  G  L  K  E  W  Q  :  A  E  V  K  F  L  G  K  L  S  H  P  N  L  V  K  L  I  G  Y  C  W  E  D  K  T  F  L  L  V  Y  E  H  M  Q  K  G  S  L  E  S  H  L  F  R   : T  E  G  A  E  A  L  S  W  G  T  R  L  K  I  A  I  G  A  A  K  G  L  D  F  L  H  T  I  E  K  Q  V  I  Y  R  D  F  K  T  A  N  I  L  L  D  S  :  D  Y  N  A  K  L  S  D  F  G  L  A  K  M  G  P  V  N  G  D  S  H  V  T  T  K  I  V  G  T  Y  G  Y  A  A  P  E  Y  M  A  T   : G  H  V  Y  V  K  S  D  V  Y  G  F  G  V  V  L  L  E  I  L  S  G  R  R  V  L  D  L  N  R  P  N  G  E  H  N  L  V  D  W  A  K  P  M  L  P  D  K  K  K  L  R  K  L  M  D  P  R  L  E  A  Q  Y  P  S  K  A  A  F  Q  I  A  E  I  I  L  R  C  L  E  P  D  P  K  N  R  P  S  M  E  E  I  L  E  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0068N05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44908" stop="44731"/>
                    <exon start="44312" stop="43978"/>
                    <exon start="42391" stop="42256"/>
                    <exon start="42165" stop="42026"/>
                    <exon start="41923" stop="41800"/>
                    <exon start="41319" stop="41033"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1200</number_coding_nucleotides>
                  <number_encoded_amino_acids>400</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLTHSTTTRKLSPILIYYYYLEATTQTTSPKNIITTEIMGNCWPKPVDVVPPTSNTPPPVIMKKPINTSPGSNTRSVVAQPSGDGGDSRKMEVPASGKIITPNLKMFTLAELKSATRNFRPDTVLGEGGFGTVFKGWVDDKTFAPSRVGVGMPVAVKKSNADSEQGLKEWQAEVKFLGKLSHPNLVKLIGYCWEDKTFLLVYEHMQKGSLESHLFRTEGAEALSWGTRLKIAIGAAKGLDFLHTIEKQVIYRDFKTANILLDSDYNAKLSDFGLAKMGPVNGDSHVTTKIVGTYGYAAPEYMATGHVYVKSDVYGFGVVLLEILSGRRVLDLNRPNGEHNLVDWAKPMLPDKKKLRKLMDPRLEAQYPSKAAFQIAEIILRCLEPDPKNRPSMEEILECL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44910" e_stop="44731"/>
            <exon e_start="44312" e_stop="43978"/>
            <exon e_start="42391" e_stop="42256"/>
            <exon e_start="42162" e_stop="42026"/>
            <exon e_start="41923" e_stop="41800"/>
            <exon e_start="41319" e_stop="41033"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.687" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44910" e_stop="44731" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.687">
            <gDNA_intron_boundary i_start="44730" i_stop="44313" i_length="418"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44312" e_stop="43978" e_length="335"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43977" i_stop="42392" i_length="1586"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42391" e_stop="42256" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="42255" i_stop="42163" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42162" e_stop="42026" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42025" i_stop="41924" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41923" e_stop="41800" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41799" i_stop="41320" i_length="480"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="41319" e_stop="41033" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44910" stop="44731"/>
              <exon start="44312" stop="43982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44909" stop="44731"/>
              <exon start="44312" stop="44010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44908" stop="44731"/>
              <exon start="44312" stop="43978"/>
              <exon start="42391" stop="42306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44801" stop="44731"/>
              <exon start="44312" stop="43978"/>
              <exon start="42391" stop="42258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44285" stop="43978"/>
              <exon start="42391" stop="42256"/>
              <exon start="42162" stop="42026"/>
              <exon start="41923" stop="41883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42134" stop="42026"/>
              <exon start="41923" stop="41800"/>
              <exon start="41319" stop="41033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308670" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAATTAACACACTCCACAACCACAAGAAAACTATCACCTATTCTTATTTATTATTATTATTTAGAAGCAACAACACAAACTACTTCTCCCAAAAATATTATTACAACAGAAATAATGGGAAATTGTTGGCCAAAACCTGTGGATGTTGTTCCTCCCACCTCTAATACTCCTCCTCCAG : TGATCATGAAGAAACCAATTAATACATCTCCGGGAAGTAACACAAGGAGTGTGGTGGCGCAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACGCCAAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATGCAGACAGTGAACAAGGTCTTAAAGAATGGCAG : GCTGAAGTAAAGTTTTTGGGAAAACTTAGCCACCCAAATTTAGTAAAACTAATTGGATATTGTTGGGAAGACAAAACATTTCTTCTAGTCTATGAGCACATGCAAAAAGGGAGCTTAGAAAGTCATCTTTTCAGAA : AAGGCGCTGAAGCATTGTCATGGGGTACAAGGCTGAAAATAGCAATCGGAGCAGCGAAGGGACTTGATTTCTTACACACCATAGAAAAACAAGTTATTTACCGCGATTTTAAAACGGCCAATATTTTACTGGACTCG : GACTATAATGCAAAGCTTTCAGATTTTGGACTAGCAAAAATGGGTCCAGTAAATGGAGACTCACATGTGACCACTAAAATAGTTGGTACTTATGGCTATGCTGCACCTGAGTACATGGCCACTG : GTCATGTATACGTAAAGAGCGACGTATACGGGTTCGGAGTCGTGTTACTCGAAATCCTTTCGGGCCGTAGAGTACTGGATCTTAACAGGCCCAATGGAGAACATAATTTAGTAGATTGGGCCAAGCCCATGTTGCCTGACAAAAAGAAGCTAAGGAAATTAATGGACCCAAGACTGGAGGCCCAATACCCATCAAAGGCTGCATTTCAAATAGCTGAAATTATATTAAGATGCCTTGAACCTGATCCAAAAAATAGACCTTCCATGGAAGAAATTTTGGAATGTTTG</gDNA_template>
            <first_frame> R  N  *  H  T  P  Q  P  Q  E  N  Y  H  L  F  L  F  I  I  I  I  *  K  Q  Q  H  K  L  L  L  P  K  I  L  L  Q  Q  K  *  W  E  I  V  G  Q  N  L  W  M  L  F  L  P  P  L  I  L  L  L  Q  :  *  S  *  R  N  Q  L  I  H  L  R  E  V  T  Q  G  V  W  W  R  S  L  A  E  M  A  V  I  R  G  K  W  K  F  R  L  A  E  K  *  L  R  Q  I  *  K  C  L  R  *  R  N  *  R  A  R  R  V  I  F  G  P  I  R  C  *  V  R  E  D  L  V  Q  Y  L  K  D  G  S  M  T  K  H  L  H  L  L  E  L  E  L  V  C  L  L  L  L  K  N  Q  M  Q  T  V  N  K  V  L  K  N  G  R :   L  K  *  S  F  W  E  N  L  A  T  Q  I  *  *  N  *  L  D  I  V  G  K  T  K  H  F  F  *  S  M  S  T  C  K  K  G  A  *  K  V  I  F  S  E  :  K  A  L  K  H  C  H  G  V  Q  G  *  K  *  Q  S  E  Q  R  R  D  L  I  S  Y  T  P  *  K  N  K  L  F  T  A  I  L  K  R  P  I  F  Y  W  T  R :   T  I  M  Q  S  F  Q  I  L  D  *  Q  K  W  V  Q  *  M  E  T  H  M  *  P  L  K  *  L  V  L  M  A  M  L  H  L  S  T  W  P  L  :  V  M  Y  T  *  R  A  T  Y  T  G  S  E  S  C  Y  S  K  S  F  R  A  V  E  Y  W  I  L  T  G  P  M  E  N  I  I  *  *  I  G  P  S  P  C  C  L  T  K  R  S  *  G  N  *  W  T  Q  D  W  R  P  N  T  H  Q  R  L  H  F  K  *  L  K  L  Y  *  D  A  L  N  L  I  Q  K  I  D  L  P  W  K  K  F  W  N  V   </first_frame>
            <second_frame>  E  I  N  T  L  H  N  H  K  K  T  I  T  Y  S  Y  L  L  L  L  F  R  S  N  N  T  N  Y  F  S  Q  K  Y  Y  Y  N  R  N  N  G  K  L  L  A  K  T  C  G  C  C  S  S  H  L  *  Y  S  S  S  S :   D  H  E  E  T  N  *  Y  I  S  G  K  *  H  K  E  C  G  G  A  A  *  R  R  W  R  *  F  E  E  N  G  S  S  G  *  R  K  N  N  Y  A  K  F  K  N  V  Y  A  S  G  I  K  E  R  D  A  *  F  S  A  R  Y  G  A  R  *  G  R  I  W  Y  S  I  *  R  M  G  R  *  Q  N  I  C  T  F  *  S  W  S  W  Y  A  C  C  C  *  K  I  K  C  R  Q  *  T  R  S  *  R  M  A   : G  *  S  K  V  F  G  K  T  *  P  P  K  F  S  K  T  N  W  I  L  L  G  R  Q  N  I  S  S  S  L  *  A  H  A  K  R  E  L  R  K  S  S  F  Q  K :   R  R  *  S  I  V  M  G  Y  K  A  E  N  S  N  R  S  S  E  G  T  *  F  L  T  H  H  R  K  T  S  Y  L  P  R  F  *  N  G  Q  Y  F  T  G  L   : G  L  *  C  K  A  F  R  F  W  T  S  K  N  G  S  S  K  W  R  L  T  C  D  H  *  N  S  W  Y  L  W  L  C  C  T  *  V  H  G  H  W :   S  C  I  R  K  E  R  R  I  R  V  R  S  R  V  T  R  N  P  F  G  P  *  S  T  G  S  *  Q  A  Q  W  R  T  *  F  S  R  L  G  Q  A  H  V  A  *  Q  K  E  A  K  E  I  N  G  P  K  T  G  G  P  I  P  I  K  G  C  I  S  N  S  *  N  Y  I  K  M  P  *  T  *  S  K  K  *  T  F  H  G  R  N  F  G  M  F  </second_frame>
            <third_frame>   K  L  T  H  S  T  T  T  R  K  L  S  P  I  L  I  Y  Y  Y  Y  L  E  A  T  T  Q  T  T  S  P  K  N  I  I  T  T  E  I  M  G  N  C  W  P  K  P  V  D  V  V  P  P  T  S  N  T  P  P  P   : V  I  M  K  K  P  I  N  T  S  P  G  S  N  T  R  S  V  V  A  Q  P  S  G  D  G  G  D  S  R  K  M  E  V  P  A  S  G  K  I  I  T  P  N  L  K  M  F  T  L  A  E  L  K  S  A  T  R  N  F  R  P  D  T  V  L  G  E  G  G  F  G  T  V  F  K  G  W  V  D  D  K  T  F  A  P  S  R  V  G  V  G  M  P  V  A  V  K  K  S  N  A  D  S  E  Q  G  L  K  E  W  Q  :  A  E  V  K  F  L  G  K  L  S  H  P  N  L  V  K  L  I  G  Y  C  W  E  D  K  T  F  L  L  V  Y  E  H  M  Q  K  G  S  L  E  S  H  L  F  R   : K  G  A  E  A  L  S  W  G  T  R  L  K  I  A  I  G  A  A  K  G  L  D  F  L  H  T  I  E  K  Q  V  I  Y  R  D  F  K  T  A  N  I  L  L  D  S  :  D  Y  N  A  K  L  S  D  F  G  L  A  K  M  G  P  V  N  G  D  S  H  V  T  T  K  I  V  G  T  Y  G  Y  A  A  P  E  Y  M  A  T   : G  H  V  Y  V  K  S  D  V  Y  G  F  G  V  V  L  L  E  I  L  S  G  R  R  V  L  D  L  N  R  P  N  G  E  H  N  L  V  D  W  A  K  P  M  L  P  D  K  K  K  L  R  K  L  M  D  P  R  L  E  A  Q  Y  P  S  K  A  A  F  Q  I  A  E  I  I  L  R  C  L  E  P  D  P  K  N  R  P  S  M  E  E  I  L  E  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0068N05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44908" stop="44731"/>
                    <exon start="44312" stop="43978"/>
                    <exon start="42391" stop="42256"/>
                    <exon start="42162" stop="42026"/>
                    <exon start="41923" stop="41800"/>
                    <exon start="41319" stop="41033"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1197</number_coding_nucleotides>
                  <number_encoded_amino_acids>399</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLTHSTTTRKLSPILIYYYYLEATTQTTSPKNIITTEIMGNCWPKPVDVVPPTSNTPPPVIMKKPINTSPGSNTRSVVAQPSGDGGDSRKMEVPASGKIITPNLKMFTLAELKSATRNFRPDTVLGEGGFGTVFKGWVDDKTFAPSRVGVGMPVAVKKSNADSEQGLKEWQAEVKFLGKLSHPNLVKLIGYCWEDKTFLLVYEHMQKGSLESHLFRKGAEALSWGTRLKIAIGAAKGLDFLHTIEKQVIYRDFKTANILLDSDYNAKLSDFGLAKMGPVNGDSHVTTKIVGTYGYAAPEYMATGHVYVKSDVYGFGVVLLEILSGRRVLDLNRPNGEHNLVDWAKPMLPDKKKLRKLMDPRLEAQYPSKAAFQIAEIILRCLEPDPKNRPSMEEILECL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="44932" e_stop="44731"/>
            <exon e_start="44325" e_stop="43978"/>
            <exon e_start="42391" e_stop="42256"/>
            <exon e_start="42165" e_stop="42026"/>
            <exon e_start="41923" e_stop="41800"/>
            <exon e_start="41319" e_stop="41033"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.847"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.847">
            <gDNA_exon_boundary e_start="44932" e_stop="44731" e_length="202"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44730" i_stop="44326" i_length="405"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44325" e_stop="43978" e_length="348"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43977" i_stop="42392" i_length="1586"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42391" e_stop="42256" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="42255" i_stop="42166" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42165" e_stop="42026" e_length="140"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42025" i_stop="41924" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41923" e_stop="41800" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41799" i_stop="41320" i_length="480"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="41319" e_stop="41033" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44932" stop="44731"/>
              <exon start="44325" stop="43978"/>
              <exon start="42391" stop="42289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44865" stop="44731"/>
              <exon start="44325" stop="43978"/>
              <exon start="42391" stop="42260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44295" stop="43978"/>
              <exon start="42391" stop="42256"/>
              <exon start="42165" stop="42026"/>
              <exon start="41923" stop="41868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42134" stop="42026"/>
              <exon start="41923" stop="41800"/>
              <exon start="41319" stop="41033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308670" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCTTTCCTTCTGTCTTCCTAAGAAATTAACACACTCCACAACCACAAGAAAACTATCACCTATTCTTATTTATTATTATTATTTAGAAGCAACAACACAAACTACTTCTCCCAAAAATATTATTACAACAGAAATAATGGGAAATTGTTGGCCAAAACCTGTGGATGTTGTTCCTCCCACCTCTAATACTCCTCCTCCAG : CATCCCTTGTTAGTGATCATGAAGAAACCAATTAATACATCTCCGGGAAGTAACACAAGGAGTGTGGTGGCGCAGCCTAGCGGAGATGGCGGTGATTCGAGGAAAATGGAAGTTCCGGCTAGCGGAAAAATAATTACGCCAAATTTAAAAATGTTTACGCTAGCGGAATTAAAGAGCGCGACGCGTAATTTTCGGCCCGATACGGTGCTAGGTGAGGGAGGATTTGGTACAGTATTTAAAGGATGGGTCGATGACAAAACATTTGCACCTTCTAGAGTTGGAGTTGGTATGCCTGTTGCTGTTAAAAAATCAAATGCAGACAGTGAACAAGGTCTTAAAGAATGGCAG : GCTGAAGTAAAGTTTTTGGGAAAACTTAGCCACCCAAATTTAGTAAAACTAATTGGATATTGTTGGGAAGACAAAACATTTCTTCTAGTCTATGAGCACATGCAAAAAGGGAGCTTAGAAAGTCATCTTTTCAGAA : CAGAAGGCGCTGAAGCATTGTCATGGGGTACAAGGCTGAAAATAGCAATCGGAGCAGCGAAGGGACTTGATTTCTTACACACCATAGAAAAACAAGTTATTTACCGCGATTTTAAAACGGCCAATATTTTACTGGACTCG : GACTATAATGCAAAGCTTTCAGATTTTGGACTAGCAAAAATGGGTCCAGTAAATGGAGACTCACATGTGACCACTAAAATAGTTGGTACTTATGGCTATGCTGCACCTGAGTACATGGCCACTG : GTCATGTATACGTAAAGAGCGACGTATACGGGTTCGGAGTCGTGTTACTCGAAATCCTTTCGGGCCGTAGAGTACTGGATCTTAACAGGCCCAATGGAGAACATAATTTAGTAGATTGGGCCAAGCCCATGTTGCCTGACAAAAAGAAGCTAAGGAAATTAATGGACCCAAGACTGGAGGCCCAATACCCATCAAAGGCTGCATTTCAAATAGCTGAAATTATATTAAGATGCCTTGAACCTGATCCAAAAAATAGACCTTCCATGGAAGAAATTTTGGAATGTTTG</gDNA_template>
            <first_frame> L  L  S  F  C  L  P  K  K  L  T  H  S  T  T  T  R  K  L  S  P  I  L  I  Y  Y  Y  Y  L  E  A  T  T  Q  T  T  S  P  K  N  I  I  T  T  E  I  M  G  N  C  W  P  K  P  V  D  V  V  P  P  T  S  N  T  P  P  P   : A  S  L  V  S  D  H  E  E  T  N  *  Y  I  S  G  K  *  H  K  E  C  G  G  A  A  *  R  R  W  R  *  F  E  E  N  G  S  S  G  *  R  K  N  N  Y  A  K  F  K  N  V  Y  A  S  G  I  K  E  R  D  A  *  F  S  A  R  Y  G  A  R  *  G  R  I  W  Y  S  I  *  R  M  G  R  *  Q  N  I  C  T  F  *  S  W  S  W  Y  A  C  C  C  *  K  I  K  C  R  Q  *  T  R  S  *  R  M  A   : G  *  S  K  V  F  G  K  T  *  P  P  K  F  S  K  T  N  W  I  L  L  G  R  Q  N  I  S  S  S  L  *  A  H  A  K  R  E  L  R  K  S  S  F  Q  N :   R  R  R  *  S  I  V  M  G  Y  K  A  E  N  S  N  R  S  S  E  G  T  *  F  L  T  H  H  R  K  T  S  Y  L  P  R  F  *  N  G  Q  Y  F  T  G  L   : G  L  *  C  K  A  F  R  F  W  T  S  K  N  G  S  S  K  W  R  L  T  C  D  H  *  N  S  W  Y  L  W  L  C  C  T  *  V  H  G  H  W :   S  C  I  R  K  E  R  R  I  R  V  R  S  R  V  T  R  N  P  F  G  P  *  S  T  G  S  *  Q  A  Q  W  R  T  *  F  S  R  L  G  Q  A  H  V  A  *  Q  K  E  A  K  E  I  N  G  P  K  T  G  G  P  I  P  I  K  G  C  I  S  N  S  *  N  Y  I  K  M  P  *  T  *  S  K  K  *  T  F  H  G  R  N  F  G  M  F  </first_frame>
            <second_frame>  S  F  P  S  V  F  L  R  N  *  H  T  P  Q  P  Q  E  N  Y  H  L  F  L  F  I  I  I  I  *  K  Q  Q  H  K  L  L  L  P  K  I  L  L  Q  Q  K  *  W  E  I  V  G  Q  N  L  W  M  L  F  L  P  P  L  I  L  L  L  Q  :  H  P  L  L  V  I  M  K  K  P  I  N  T  S  P  G  S  N  T  R  S  V  V  A  Q  P  S  G  D  G  G  D  S  R  K  M  E  V  P  A  S  G  K  I  I  T  P  N  L  K  M  F  T  L  A  E  L  K  S  A  T  R  N  F  R  P  D  T  V  L  G  E  G  G  F  G  T  V  F  K  G  W  V  D  D  K  T  F  A  P  S  R  V  G  V  G  M  P  V  A  V  K  K  S  N  A  D  S  E  Q  G  L  K  E  W  Q  :  A  E  V  K  F  L  G  K  L  S  H  P  N  L  V  K  L  I  G  Y  C  W  E  D  K  T  F  L  L  V  Y  E  H  M  Q  K  G  S  L  E  S  H  L  F  R   : T  E  G  A  E  A  L  S  W  G  T  R  L  K  I  A  I  G  A  A  K  G  L  D  F  L  H  T  I  E  K  Q  V  I  Y  R  D  F  K  T  A  N  I  L  L  D  S  :  D  Y  N  A  K  L  S  D  F  G  L  A  K  M  G  P  V  N  G  D  S  H  V  T  T  K  I  V  G  T  Y  G  Y  A  A  P  E  Y  M  A  T   : G  H  V  Y  V  K  S  D  V  Y  G  F  G  V  V  L  L  E  I  L  S  G  R  R  V  L  D  L  N  R  P  N  G  E  H  N  L  V  D  W  A  K  P  M  L  P  D  K  K  K  L  R  K  L  M  D  P  R  L  E  A  Q  Y  P  S  K  A  A  F  Q  I  A  E  I  I  L  R  C  L  E  P  D  P  K  N  R  P  S  M  E  E  I  L  E  C  L </second_frame>
            <third_frame>   P  F  L  L  S  S  *  E  I  N  T  L  H  N  H  K  K  T  I  T  Y  S  Y  L  L  L  L  F  R  S  N  N  T  N  Y  F  S  Q  K  Y  Y  Y  N  R  N  N  G  K  L  L  A  K  T  C  G  C  C  S  S  H  L  *  Y  S  S  S  S :   I  P  C  *  *  S  *  R  N  Q  L  I  H  L  R  E  V  T  Q  G  V  W  W  R  S  L  A  E  M  A  V  I  R  G  K  W  K  F  R  L  A  E  K  *  L  R  Q  I  *  K  C  L  R  *  R  N  *  R  A  R  R  V  I  F  G  P  I  R  C  *  V  R  E  D  L  V  Q  Y  L  K  D  G  S  M  T  K  H  L  H  L  L  E  L  E  L  V  C  L  L  L  L  K  N  Q  M  Q  T  V  N  K  V  L  K  N  G  R :   L  K  *  S  F  W  E  N  L  A  T  Q  I  *  *  N  *  L  D  I  V  G  K  T  K  H  F  F  *  S  M  S  T  C  K  K  G  A  *  K  V  I  F  S  E  :  Q  K  A  L  K  H  C  H  G  V  Q  G  *  K  *  Q  S  E  Q  R  R  D  L  I  S  Y  T  P  *  K  N  K  L  F  T  A  I  L  K  R  P  I  F  Y  W  T  R :   T  I  M  Q  S  F  Q  I  L  D  *  Q  K  W  V  Q  *  M  E  T  H  M  *  P  L  K  *  L  V  L  M  A  M  L  H  L  S  T  W  P  L  :  V  M  Y  T  *  R  A  T  Y  T  G  S  E  S  C  Y  S  K  S  F  R  A  V  E  Y  W  I  L  T  G  P  M  E  N  I  I  *  *  I  G  P  S  P  C  C  L  T  K  R  S  *  G  N  *  W  T  Q  D  W  R  P  N  T  H  Q  R  L  H  F  K  *  L  K  L  Y  *  D  A  L  N  L  I  Q  K  I  D  L  P  W  K  K  F  W  N  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0068N05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44793" stop="44731"/>
                    <exon start="44325" stop="43978"/>
                    <exon start="42391" stop="42256"/>
                    <exon start="42165" stop="42026"/>
                    <exon start="41923" stop="41800"/>
                    <exon start="41319" stop="41033"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WEIVGQNLWMLFLPPLILLLQHPLLVIMKKPINTSPGSNTRSVVAQPSGDGGDSRKMEVPASGKIITPNLKMFTLAELKSATRNFRPDTVLGEGGFGTVFKGWVDDKTFAPSRVGVGMPVAVKKSNADSEQGLKEWQAEVKFLGKLSHPNLVKLIGYCWEDKTFLLVYEHMQKGSLESHLFRTEGAEALSWGTRLKIAIGAAKGLDFLHTIEKQVIYRDFKTANILLDSDYNAKLSDFGLAKMGPVNGDSHVTTKIVGTYGYAAPEYMATGHVYVKSDVYGFGVVLLEILSGRRVLDLNRPNGEHNLVDWAKPMLPDKKKLRKLMDPRLEAQYPSKAAFQIAEIILRCLEPDPKNRPSMEEILECL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 46 chains have been computed
$ 
$ memory statistics:
$ 66392 bytes spliced alignments in total
$ 33 spliced alignments have been stored
$ 2011 bytes was the average size of a spliced alignment
$ 10160 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2540 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 49 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 17:19:23
-->
