<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-20 20:30:12"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244723" ref_strand="+" ref_description="SGN-E244723 [cLED-38-B23]">
      <seq>gacttctccagaacctttgagaaagccctcacgccgcttgttcatcttgtccaaatctcggcattctctttctatacataaagattttcaatggcggcgagaatcgcattgctgaagtacctgagagtggaagctcggccagtgcagcttcgaaaccctaggctcatcggaggttcagttagtcagcttttcaaacgtcatttctcacaggaagtaaggggatcgtttctcgacaaggatgaagttagggatcgtgttatcaacgtcgtcaaaaactttcagaaagttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="815" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="515" g_stop="224" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E244723" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="515" e_stop="224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTCTCCAGAACCTTTGAGAAAGCCCTCACGCCGCTTGTTCATCTTGTCCAAATCTCGGCATTCTCTTTCTATACATAAAGATTTTCAATGGCGGCGAGAATCGCATTGCTGAAGTACCTGAGAGTGGAAGCTCGGCCAGTGCAGCTTCGAAACCCTAGGCTCATCGGAGGTTCAGTTAGTCAGCTTTTCAAACGTCATTTCTCAGAGGAAGTAAGGGGATCGTTTCTCGACAAGGATGAAGTTAGGGATCGTGTTATCAACGTCGTCAAAAACTTTCAGAAAGTTGATC</genome_strand>
        <mrna_strand>GACTTCTCCAGAACCTTTGAGAAAGCCCTCACGCCGCTTGTTCATCTTGTCCAAATCTCGGCATTCTCTTTCTATACATAAAGATTTTCAATGGCGGCGAGAATCGCATTGCTGAAGTACCTGAGAGTGGAAGCTCGGCCAGTGCAGCTTCGAAACCCTAGGCTCATCGGAGGTTCAGTTAGTCAGCTTTTCAAACGTCATTTCTCACAGGAAGTAAGGGGATCGTTTCTCGACAAGGATGAAGTTAGGGATCGTGTTATCAACGTCGTCAAAAACTTTCAGAAAGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539344" ref_strand="+" ref_description="SGN-E539344 [TUS-59-A21]">
      <seq>gttataacactgtaatatttgggttggccaaagaaaaaagggtaaccgaagcatttttgctattccatcagatgaagaagaaaatgtatcctgactgtgtaactgtatatgctcttctacctattcttgtgaaagacggtttagttgaggatgctgttaagattgtggacggttttgttaaccaggctttgaacaggtcagatagatccttttggctgcaactgacggaaggtgttttgggtgaagctgaattagatcattccatttctttcgcggaaaaactggcatcatatcatatttgtagaactgacgtaataatagtgcctgttattagagtcctttgcaagcaaaagaaagcccttgatgctcatgatctttttgttaaattcaagaacaaattcggtattcgtccaacactaagatcatattatcccttggttgaaggacttcttaatgttaatcttaaagaattggcgtggcatcttttcaaggagatgaaaaattccgcctgttgtgccccagatgtttatacctataatttgtttcttgatgaacttggaaagtccgggaaggttgatgaactttttgagctgtatgaggagatgctccacagaggatgtaagccggtcgccataacttacaatattctcatttctggtttggtgaagtctaataaagtagagagagcaatggatttttactatgatcttgtaagtgtggggtttacacctactccttgtacatatggtcctctcatagatggggctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="+" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="48651" stop="50019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48951" g_stop="49719" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="770" r_length="770" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="+" ref_id="SGN-E539344" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48951" e_stop="49719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATAACACTGTAATATTTGGGTTGGCCAAAGAAAAAAGGGTAACCGAAGCATTTTTGCTATTCCATCAGATGAAGAAGAAAATGTATCCTGACTGTGTAACTGTATATGCTCTTCTACCTATTCTTGTGAAAGACGGTTTAGTTGAGGATGCTGTTAAGATTGTGGACGGTTTTGTTAACCAGGCTTTGAACAGGTCAGATAGATCCTTTTGGCTGCAACTGACGGAAGGTGTTTTGGGTGAAGCTGAATTAGATCATTCCATTTCTTTCGCGGAAAAACTGGCATCATATCATATTTGTAGAACTGACGTAATAATAGTGCCTGTTATTAGAGTCCTTTGCAAGCAAAAGAAAGCCCTTGATGCTCATGATCTTTTTGTTAAATTCAAGAACAAATTCGGTATTCGTCCAACACTAAGATCATATTATCCCTTGGTTGAAGGACTTCTTAATGTTAATCTTAAAGAATTGGCGTGGCATCTTTTCAAGGAGATGAAAAATTCCGCCTGTTGTGCCCCAGATGTTTATACCTATAATTTGTTTCTTGATGAACTTGGAAAGTCCGGGAAGGTTGATGAACTTTTTGAGCTGTATGAGGAGATGCTCCACAGAGGATGTAAGCCGGTCGCCATAACTTACAATATTCTCATTTCTGGTTTGGTGAAGTCTAATAAAGTAGAGAGAGCAATGGATTTTTACTATGATCTTGTAAGTGTGGGGTTTACACCTACTCCTTGTACATATGGTCCTCTCATAGAT-GGGCTTTT</genome_strand>
        <mrna_strand>GTTATAACACTGTAATATTTGGGTTGGCCAAAGAAAAAAGGGTAACCGAAGCATTTTTGCTATTCCATCAGATGAAGAAGAAAATGTATCCTGACTGTGTAACTGTATATGCTCTTCTACCTATTCTTGTGAAAGACGGTTTAGTTGAGGATGCTGTTAAGATTGTGGACGGTTTTGTTAACCAGGCTTTGAACAGGTCAGATAGATCCTTTTGGCTGCAACTGACGGAAGGTGTTTTGGGTGAAGCTGAATTAGATCATTCCATTTCTTTCGCGGAAAAACTGGCATCATATCATATTTGTAGAACTGACGTAATAATAGTGCCTGTTATTAGAGTCCTTTGCAAGCAAAAGAAAGCCCTTGATGCTCATGATCTTTTTGTTAAATTCAAGAACAAATTCGGTATTCGTCCAACACTAAGATCATATTATCCCTTGGTTGAAGGACTTCTTAATGTTAATCTTAAAGAATTGGCGTGGCATCTTTTCAAGGAGATGAAAAATTCCGCCTGTTGTGCCCCAGATGTTTATACCTATAATTTGTTTCTTGATGAACTTGGAAAGTCCGGGAAGGTTGATGAACTTTTTGAGCTGTATGAGGAGATGCTCCACAGAGGATGTAAGCCGGTCGCCATAACTTACAATATTCTCATTTCTGGTTTGGTGAAGTCTAATAAAGTAGAGAGAGCAATGGATTTTTACTATGATCTTGTAAGTGTGGGGTTTACACCTACTCCTTGTACATATGGTCCTCTCATAGATGGGGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281729" ref_strand="+" ref_description="SGN-E281729 [cLER-14-E5]">
      <seq>ttataacactgtaatatttgggttggccaaagaaaaaagggtaaccgaagcatttttgctattccatcagatgaagaagaaaatgtatcctgactgtgtaactgtatatgctcttctacctattcttgtgaaagacggtttagttgaggatgctgttaagattgtggacggttttgttaaccaggctttgaacaggtcagatagatccttttggctgcaactgacggaaggtgttttgggtgaagctgaattagatcattccatttctttcgcggaaaaactggcatcatatcatatttgtagaactgacgtaataatagtgcctgttattagagtcctttgcaagcaaaagaaagcccttgatgctcatgatctttttgttaaattcaagaacaaattcggtattcgtccaacactaagatcatattatcccttggttgaaggacttcttaatgttaatcttaaagaattggcgtggcatcttttcaaggagatgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="+" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="48652" stop="49753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48952" g_stop="49453" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="+" ref_id="SGN-E281729" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48952" e_stop="49453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAACACTGTAATATTTGGGTTGGCCAAAGAAAAAAGGGTAACCGAAGCATTTTTGCTATTCCATCAGATGAAGAAGAAAATGTATCCTGACTGTGTAACTGTATATGCTCTTCTACCTATTCTTGTGAAAGACGGTTTAGTTGAGGATGCTGTTAAGATTGTGGACGGTTTTGTTAACCAGGCTTTGAACAGGTCAGATAGATCCTTTTGGCTGCAACTGACGGAAGGTGTTTTGGGTGAAGCTGAATTAGATCATTCCATTTCTTTCGCGGAAAAACTGGCATCATATCATATTTGTAGAACTGACGTAATAATAGTGCCTGTTATTAGAGTCCTTTGCAAGCAAAAGAAAGCCCTTGATGCTCATGATCTTTTTGTTAAATTCAAGAACAAATTCGGTATTCGTCCAACACTAAGATCATATTATCCCTTGGTTGAAGGACTTCTTAATGTTAATCTTAAAGAATTGGCGTGGCATCTTTTCAAGGAGATGAAAAAT</genome_strand>
        <mrna_strand>TTATAACACTGTAATATTTGGGTTGGCCAAAGAAAAAAGGGTAACCGAAGCATTTTTGCTATTCCATCAGATGAAGAAGAAAATGTATCCTGACTGTGTAACTGTATATGCTCTTCTACCTATTCTTGTGAAAGACGGTTTAGTTGAGGATGCTGTTAAGATTGTGGACGGTTTTGTTAACCAGGCTTTGAACAGGTCAGATAGATCCTTTTGGCTGCAACTGACGGAAGGTGTTTTGGGTGAAGCTGAATTAGATCATTCCATTTCTTTCGCGGAAAAACTGGCATCATATCATATTTGTAGAACTGACGTAATAATAGTGCCTGTTATTAGAGTCCTTTGCAAGCAAAAGAAAGCCCTTGATGCTCATGATCTTTTTGTTAAATTCAAGAACAAATTCGGTATTCGTCCAACACTAAGATCATATTATCCCTTGGTTGAAGGACTTCTTAATGTTAATCTTAAAGAATTGGCGTGGCATCTTTTCAAGGAGATGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539341" ref_strand="+" ref_description="SGN-E539341 [TUS-59-A21](-)">
      <seq>atgatcaacggtcttgggaaatctggtaaaatgaaggaagcgctgcatcttcttaatgagatgaaaagcagaggaatcaccccgaatctttatacctataataccttgatattcaatcttgggattgttggaatgttggaggaggccggaaggatgtatgaagaacttcagcaactcggtcttgaacccgatgtttttacttataatgctcttattagggggtacagcaagtctggtgatccagatggtgcatatgccatttatgagaaaatgatggtcgggggttgtagcccaaatagtggtacttttgctcaactacctaattaacagcggacattttaggttcttcaagtgaagcttgtgagagcgagttcctaaactctgcgttggggctgctaaggggttacctctgctgattggacgttactatttggagcttgtagatgtgtcagcaaggttcttggggcggggctgaacctcaaagtctttcggatttcattttaaggtgctctataaatccgaatacgttgtctatataaattgttaatatttggttgttgtaggtttatacctgtgcagcttgtaagaatgagtgggcagtcttagcattaagtgtagcatatctcttatgcttggtgaatacatggtgcctatatctgtagataattcaaccatatttgaggcaaaactctttataaagttttgatttgttattcaatttactaagaaatgtagtgatcttcttgttgctaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="+" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="49718" stop="51665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50018" g_stop="50417" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50418" i_stop="51008" i_length="591">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51009" g_stop="51364" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="756" r_length="356" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="757" polyA_stop="776"/>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="+" ref_id="SGN-E539341" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50018" e_stop="50417"/>
          <exon e_start="51009" e_stop="51364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATCAACGGTCTTGGGAAATCTGGTAAAATGAAGGAAGCGCTGCATCTTCTTGATGAGATGAAAAGCAGAGGAATCACCCCGAATCTTTATACCTATAATACCTTGATATTCAATCTTGGGATTGTTGGAATGTTGGAGGAGGCCGGAAGGATGTATGAAGAACTTCAGCAACTCGGTCTTGAACCCGATGTTTTTACTTATAATGCTCTTATTAGGGGGTACAGCAAGTCTGGTGATCCAGATGGTGCATATGCCATTTATGAGAAAATGATGGTCGGGGGTTGTAGCCCAAATAGTGGTACTTTTGCTCAACTACCTAATTAACAGCGGACATTTTAGGTTCTTCAAGTGAAGCTTGTGAGAGCGAGTTCCTAAACTCTGCGTTGGGGCTGCTAAGGTATATACTCATTCTACCACTCCAGGGAACTTGCTGGAGAATGTAAATCATTTCTGCACTTTTTGAATATTCAAAACATGCTAAGTAAAAATGTTTTTTTCAAGACAGTTGCTGTAATTTCTTGCTCCTAGAATCATCACGTACCCCGGAGGCAGATCCAGATATTGGTACTAGGTTCATCAAAAAACCCAATGTACTCTGATACTCGTTACTCGAGCTGAGGGTCTTCCAGAAACAGCCTCTCTACCTCCTCGAGGTATGGGTAAGGTTTGCGTACACTCTACCCTCTCTAGACCCTCCTAATGGGACTAACACTGGGTTTCTTGTTGTTGAACCCATGATTTCAAAAATACAATGGGTTCAATGATAAGAACCTTGAAGGTTGAACACAAATCGTAAATCTTGGATCTGCCTCTGTCATCCCCTGCTCTCAAATTTATCACCAAGACTATAAGAAAGATAATTTGCTTATTCCCTTTTCCATTCTCAGAACATCAATGTGTCCAAGCTAGAAGTTATTATTTTGTCAAGGCAGATAGTTAACTTGGCTGAAAGTTGTCTTAACCTTAACTTCTCGATTCTTTTCTGCAGGGGTTACCTCTGCTGATTGGACGTTACTATTTGGAGCTTGTAGATGTGTCAGCAAGGTTCTTGGGGCGGGGCTGAACCTCAAAGTCTTTCGGATTTCATTTTAAGGTGCTCTATAAATCCGAATACGTTGTCTATATAAATTGTTAATATTTGGTTGTTGTAGGTTTATACCTGTGCAGCTTGTAAGAATGAGTGGGCAGTCTTAGCATTAAGTGTAGCATATCTCTTATGCTTGGTGAATACATGGTGCCTATATCTGTAGATAATTCAACCATATTTGAGGCAAAACTCTTTATAAAGTTTTGATTTGTTATTCAATTTACTAAGAAATGTAGTGATCTTCTTGTTGCTAAGAA</genome_strand>
        <mrna_strand>ATGATCAACGGTCTTGGGAAATCTGGTAAAATGAAGGAAGCGCTGCATCTTCTTAATGAGATGAAAAGCAGAGGAATCACCCCGAATCTTTATACCTATAATACCTTGATATTCAATCTTGGGATTGTTGGAATGTTGGAGGAGGCCGGAAGGATGTATGAAGAACTTCAGCAACTCGGTCTTGAACCCGATGTTTTTACTTATAATGCTCTTATTAGGGGGTACAGCAAGTCTGGTGATCCAGATGGTGCATATGCCATTTATGAGAAAATGATGGTCGGGGGTTGTAGCCCAAATAGTGGTACTTTTGCTCAACTACCTAATTAACAGCGGACATTTTAGGTTCTTCAAGTGAAGCTTGTGAGAGCGAGTTCCTAAACTCTGCGTTGGGGCTGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTACCTCTGCTGATTGGACGTTACTATTTGGAGCTTGTAGATGTGTCAGCAAGGTTCTTGGGGCGGGGCTGAACCTCAAAGTCTTTCGGATTTCATTTTAAGGTGCTCTATAAATCCGAATACGTTGTCTATATAAATTGTTAATATTTGGTTGTTGTAGGTTTATACCTGTGCAGCTTGTAAGAATGAGTGGGCAGTCTTAGCATTAAGTGTAGCATATCTCTTATGCTTGGTGAATACATGGTGCCTATATCTGTAGATAATTCAACCATATTTGAGGCAAAACTCTTTATAAAGTTTTGATTTGTTATTCAATTTACTAAGAAATGTAGTGATCTTCTTGTTGCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289962" ref_strand="+" ref_description="SGN-E289962 [cLET-9-B10]">
      <seq>ttgaaagaaacttatccaataaagcttcaagaattcttatatggattgaaatagtcaaggaagaaaaatggtacaaaagaatgaccctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgccttgacctacagattgataatttgacaaatgaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatatgaataaatcgcattcattgagtaccccaatgattatgagattacttgacataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatattattccagatatttgttttgcagtaaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="54796" stop="53790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54496" g_stop="54088" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E289962" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54496" e_stop="54088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATAGATTGAAATGGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTAATTTTATGAAAAGGTTTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTAAAAAGTTTTGATGCAATTTTATATGGATAAATCACATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCTGTTTGATCTCAAAAGAAGGATGAGGAGTTTATTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGAAAATTTATT</genome_strand>
        <mrna_strand>TTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAATGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGCCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATATGAATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391540" ref_strand="+" ref_description="SGN-E391540 [TUS-16-I1]">
      <seq>acgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="55204" stop="53926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54904" g_stop="54226" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E391540" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54904" e_stop="54226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGATCTTGAATTTAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAGGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGTGATACTATAACCGTAAGATATCAAATACGATTTGTGCCTTGGGGCATAAAGGTTTATCGC-AAAATCCTGACATTATTGGAGATGTTCTTTTTTTTTGTGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCGAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATAGATTGAAATGGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTAATTTTATGAAAAGGTTTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTAAAAAGTTTTGATGCAATTTTATATGGATAAATCACATTCATTGAGTACCCCAATGATTATGAGATCACTTGAC</genome_strand>
        <mrna_strand>ACGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTT-TTCTCCTTTG-GTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267707" ref_strand="+" ref_description="SGN-E267707 [cLEI-12-K2]">
      <seq>ttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="55155" stop="53972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54855" g_stop="54272" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E267707" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54855" e_stop="54272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAGGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGTGATACTATAACCGTAAGATATCAAATACGATTTGTGCCTTGGGGCATAAAGGTTTATCGC-AAAATCCTGACATTATTGGAGATGTTCTTTTTTTTTGTGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCGAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATAGATTGAAATGGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTAATTTTATGAAAAGGTTTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTAAAAAGTTTTGATGCAATTTTATATGGA</genome_strand>
        <mrna_strand>TTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTT-TTCTCCTTTG-GTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205808" ref_strand="+" ref_description="SGN-E205808 [cLEC-20-M21]">
      <seq>cgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="55203" stop="54048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54903" g_stop="54348" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E205808" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54903" e_stop="54348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGATCTTGAATTTAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAGGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGTGATACTATAACCGTAAGATATCAAATACGATTTGTGCCTTGGGGCATAAAGGTTTATCGC-AAAATCCTGACATTATTGGAGATGTTCTTTTTTTTTGTGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCGAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATAGATTGAAATGGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTAATTTTATGAAAAGGTTTTGGTAAGACAAAATTTTGTCTTGACCTACAG</genome_strand>
        <mrna_strand>CGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTT-TTCTCCTTTG-GTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202657" ref_strand="+" ref_description="SGN-E202657 [cLEC-19-H1]">
      <seq>gatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttaaaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacgggttgcttcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgatttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="55199" stop="54145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54899" g_stop="54445" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E202657" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54899" e_stop="54445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGAATTTAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAGGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGTGATACTATAACCGTAAGATATCAAATACGATTTGTGCCTTGGGGCATAAAGGTTTATCGC-AAAATCCTGACATTATTGGAGATGTTCTTTTTTTTTGTGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCGAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATAGATTGAAAT</genome_strand>
        <mrna_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAAAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGGTTGCTTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTT-TTCTCCTTTG-GTGGATGCAATGAGGTTTGATTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273497" ref_strand="+" ref_description="SGN-E273497 [cLEN-3-J16]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaatttatatcattgagcgctacctcatatcaaagataccgtcgacggttatttgatatcgattccaacaagacataacttatcgagatctcttcaatttttttcattatttcaggtacctgaacctttttcaagattttatgaagtgttatgtcaatgtgctcctttatagcacttgcctcattatcatgaccatattgatcatttgctccttccttctttaaggaattttatatttggaatcaattggtctattacgctttcggcgtatcataaactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="+" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="54209" stop="55485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54509" g_stop="55185" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="+" ref_id="SGN-E273497" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54509" e_stop="55185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTCGACATTACAATTATTCATTACATGCATTCAAGCTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACACAAAAAAAAAGAACATCTCCAATAATGTCAGGA-TTTTGCGATAAACCTTTATGCCCCAAGGCACAAATCGTATTTGATATCTTACGGTTATAGTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACCTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTCCACACTATATGACAGATTTAAATTCAAGATCCTCGTCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATATCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTC-A--TTTTTCATTATTTCAGGTATGTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCTTTTATAGCACTTGTCTCATTATCATGACCATATTGATCATTTGTTCCTTCCTTCTTCAAAGAATTTTATATTTGGAATCGATTGGTCTATTACGCTTCCGGCGTATCATAGACTCTG</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA---C-A-A-T----TT-TTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCAC-CAAAGGAGAA-AACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCAATTTTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCCTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTTAAGGAATTTTATATTTGGAATCAATTGGTCTATTACGCTTTCGGCGTATCATAAACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273387" ref_strand="+" ref_description="SGN-E273387 [cLEN-3-J20]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="+" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="54209" stop="55212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54509" g_stop="54912" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="+" ref_id="SGN-E273387" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.041" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54509" e_stop="54912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTCGACATTACAATTATTCATTACATGCATTCAAGCTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACACAAAAAAAAAGAACATCTCCAATAATGTCAGGA-TTTTGCGATAAACCTTTATGCCCCAAGGCACAAATCGTATTTGATATCTTACGGTTATAGTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACCTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTCCACACTATATGACAGATTTAAATTCAAGATCCTCGTCACAATTT</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA---C-A-A-T----TT-TTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCAC-CAAAGGAGAA-AACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338242" ref_strand="+" ref_description="SGN-E338242 [cTOE-13-M11]">
      <seq>taatattttctttcttttagaattttagtaagttcttttataacacgttatcagcacgagtctctagctaattgagagtgagttttagttttttctttaactcatgttttggttgatctcgatatgagaatcaaggtattatttgcataagatcaggtatgtattttctaaaatattttatgatttagaataaaatagtattcagtcactagcaattatcaggaaccgaagacatatactactattggttgaatatgacatgctatataaaacttattaaatggaagaaggtataaaattttaatagcatgagtttgaatgttattttgattgttttgaaagactcaaagggtgagtcgtgttgtacttcggtctattataccgttggtcaagggtaagacgattgattcaagtttcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="58189" stop="57204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57889" g_stop="57504" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="421" r_length="386" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E338242" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57889" e_stop="57504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTAG-TTTTTCTTTGACTCATGTTTTGGTTGATCTCGTTATGAGAATCAAGGTATTATATGCATAAAATCAGGTATGTATTTTCTAGAATATTTTATGATTTAGAATAAAAATAATATTCAGTCACTAACAATTATCAAGAACCGAAGACATATACTACTATTGGTTGAATATAACATGCTATACAAAACTTCTTAAATAGAAGAAGGTATAAAAATTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGGTGAATCATGTTGTACTTCGGTCTATTATACCGTTGGTTAAGGGTAAGGTGATGGATTCAAGTTTCATCG</genome_strand>
        <mrna_strand>TTTTATAACACGTTATCAGCACGAGTCTCTAGCTAATTGAGAGTGAGTTTTAGTTTTTTCTTTAACTCATGTTTTGGTTGATCTCGATATGAGAATCAAGGTATTATTTGCATAAGATCAGGTATGTATTTTCTAAAATATTTTATGATTTAGAAT-AAAATAGTATTCAGTCACTAGCAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATATAAAACTTATTAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGGTGAGTCGTGTTGTACTTCGGTCTATTATACCGTTGGTCAAGGGTAAGACGATTGATTCAAGTTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540698" ref_strand="+" ref_description="SGN-E540698 [TUS-61-B19](-)">
      <seq>gaatatataggtgctcttatggaactggctcaagatcgacgaggaatattcaaagagatgaaatatattaccgagaatagagcatctatcatatatgaattgcctcttgctgagatggttggagatttctttgatcagctaaagtcaagaagcaaaggttatgcaagcatggaatacaacttcattgggtatacagaaagtgatttgataaagcttgatattctcataaatggtgatcgtgtcgaacccttggcaacaatcgtacataaagataaggcatattctgtgggaagggctttaacccaaaagctgaaagaacttatacccagacaaatgtttaaagtaccaattcaggcaaccattggctcaaaagtgattgccagcgaggcaatatctgctatcaggaaggatgttctcgccaagtgctatggtggtgacatctcgagaaaaaagaaactgctcaagaaacaggctgaaggaaagaaaaggatgaaagccattggtaaagttgatgtaccacaggaagcattcatggctgtattaaaacttgaaaaagaggtcttataattcattttgttagtaaagatttttaccgtacatcctaccctcgtcagaccctattgggttcgcgggcaaaatgcagtaaagaaagtggggactacattgattctgatataaatatcatgtgaatagctgtatgacctgggatttttttaattttctttttgagttttttgcattatttcaaacacagcattaatgaatagctaattcagattgagaagttcctatttaagtgactttgtatataaaggagccagttatcttttgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="67938" stop="60427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67638" g_stop="67525" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67524" i_stop="67199" i_length="326">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67198" g_stop="67125" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="188" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67124" i_stop="64455" i_length="2670">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64454" g_stop="64367" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="276" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64366" i_stop="63832" i_length="535">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63831" g_stop="63754" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="354" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63753" i_stop="62700" i_length="1054">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62699" g_stop="62624" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="430" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62623" i_stop="62465" i_length="159">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62464" g_stop="62424" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="471" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62423" i_stop="61095" i_length="1329">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61094" g_stop="60724" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="843" r_length="372" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E540698" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67638" e_stop="67525"/>
          <exon e_start="67198" e_stop="67125"/>
          <exon e_start="64454" e_stop="64367"/>
          <exon e_start="63831" e_stop="63754"/>
          <exon e_start="62699" e_stop="62624"/>
          <exon e_start="62464" e_stop="62424"/>
          <exon e_start="61094" e_stop="60724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATATAGGTGCTCTTATGGAACTGGCTCAAGATCGACGAGGAATATTCAAAGAGATGAAATATATTACCGAGAATAGAGCATCTATCATATATGAATTGCCTCTTGCTGAGGTACTATTTTGTAACTAGTTAACCAGTGCTCTGATCTAGCGCCCTTGTATATTGTAAAAGGGGGAGGGTACAAAACATACATGTCCAAAGGATGTAAAATTTGGGTGGCTGTCGTCTTGTTCACTAGTTGTTTTGGTACTTCGCTATTTATGCTGTGTATTCATTTTTTAAGGATTCCATGATGAATTTTGTTTCCTTTTTATTTTATTTTGTTTTTTTAATCATGGAATAATTTCATTTTTCTTTTGCTTTTATGTAAGAACATGTATGAATGTTGAGCAGGGTCTTTCTTTATCCGGTTATGATATTTCAATTTTCTTCGCCAGATGGTTGGAGATTTCTTTGATCAGCTAAAGTCAAGAAGCAAAGGTTATGCAAGCATGGAATACAACTTCATTGGGTAAGTCAATATAATATGCAATATCAAGTCTATCTTTAATGATTTTGATCTCCTAATAATCTGGAACTTACACCCGCTTTTAAATATTAACTCCATGTCGTGTTTTCACTTTTAAGTTCTTTGTAAACAGAGTGAAGTGATGCTTCTATCACTATTGAATTGATTGGGGTAACGAGCATTCAGTTGATTTATTAATTTTTTTCCAAGGTTAAAGACAAATTTGTATCCACTTTTCTTTTTTACGTATCCACTCTCTCTTACATATGAGGAATAGGAGAAGTTCACATGATAAAGGAGAGACGAAATGGTTTAGTGAACCCTTATACTTGTATCAATTTGTATTCTGGACCCTCCTGCTTAATCATTTGTCAATTGAGCCCTTAAACTTAATTAAACACAATTTAACAAATCCCTCTGGCCATTGACCAGACTTGTGTGGAATTAGAATGTCTGAGTTGACAAAAGTGTGTAACTACACTCTTACAGCGAGTGAATGACATTATTGGGTTAAAAAAAAACTAAAATTAAAAAAGAAATAAATTTTAAAAAAACTATTAATTAAAAATTCCTTCTTCTTCACCCACTACACCATCCTTTTTAGTCATTTTCATTCCAAACCTAATCTTTTTTTTTCCTTCTTCAAAATCCTTTTCATCCCAAAACCAATTTTTTTTCCTTCGTCAGAATCTTTTTCAACCATTTCCATCCTAAACCCAACTTTTTTTCCTTCTTCAAAATCTATTAACATCAATTTATCAGATCTTTGATATAATTTAAGTCTATTGATTCACCACTGAGGGAAAAAGCGGTGTTGGTGGTACTCGTCGGAGCACTGAATCGCAGTGGAGTGAGAGAGAAGCGGCGTTGGTGGTGCACGCCGGAGACCAGATCTGATGGTGCGATGACTTAGGTTGTTGATTTTGTGGAGTTGAGGAGGAAAGGAAAATGATGATCGTGCGGTGGAGATGTAGACATGTGAGGATGAGAGTATATTGATTTTCCTGACAAAAATGGCGATGATGACATTCTCCATAGATTTTGGCCATGAAATGGGGAAATCGGATGTATGAATTTTTTATTTTTTCCATTATAGCTCATTAAGAGCTTCACCACTGCTTCCCCTTATTAAACAAATATATCAATAGATCAAACAAAACACATAAAAACATATGAAAATGCAAAACATGAAATTGGAGTAATGAAGTTGACGAAAAAGTTGAACATAAAATGGTGAAATAATACTCTAAAGAATAAATTAAACATTTTATTCTTTTACCTTTAATTAGATAATTTTGATTAACAATTTTAAAAAATAGTTATGAAATAATTATGACATAGAATTAATATATCTCACATAGATATGACATGTCATTTATGTAAAGGAGAATGAGATACACACATGGTTGGAGGGGCTTAAAAGTCTCGTTTTAATTGAGTTTAAGGGTTCAATTGTCCAGAATACAAACTGATACAAGTATAAGGGTCTACCAGACATTTCGCCTAAAGGAGAACAGTATGAAATCTAAAAAGGGCAGCCCGGTGCAATAAGCTCTCGCTATGTGTGGGGTGCAGGGAAGGATGGACCACTAGAGTTCATTATATGCAGTTTTACCCTGTATTTCTGCAATAGGCTGTTTCCGCAGCTCAAATCCGTGACCTCCAGGTCACATGACAACAACTTTACTAGTTAAGCCAAGGGCCCCCTTCAAACGTTATAAAATCTCTTTCCACATAAAATCAGCCTATTGTTATCTTTTGTTATTCCATGAAAATGGTCTTGCTGCAGAAAGAAGATCCCTATTGTTATTCCATCAAAAAATTGTAAAAAGTTTATTGGTAGTTAGGTATTCTAGTTGGAAGTTTTCACTGTCCATGGCATAATAGGTGGAAGCAACAGATGCAATCTAGTGGTATTTACTTTTTTTTTTGGTATCATGACTTTGACTTCAACATTCTAAACCTTACAGTACAGTGGGTCAAAGACCTTTTGTGGGTGTGTTTGGCTGGAAAATGTTTCTTGGAAAACAAGTTGGTTTCTTACTCATTTTCTAGTGTTTGGTAAGTAAGCAAAAAATTGTTATCTCAAGAGTATTTATATGTAATCTAGCAAAAAATGTAGGGGTAGGAGGGGGTGGCGGGATGGGATGGTCAAGGAGTAGGGGTTGGTGGCGTTGGGTGGGCGGGGGATACAATAAAGATAGAAAGTCACTTATAGAACTTGTTTTCCCCACTTCCATCAAGGAAGTCATTTTCCTATTTTTCAGGAACTTCTTTTCCTTGAGAAATTGTTTTCCAAAATTTTTGTCCAACTAAACATGGGAAAATAAGAAACTTTTTCCAGAAAATGTTTTCTTCACTACCAAACACCCACTGTGTTTTCGCATTAAAATTATGAACTCTTTTACATGTGACCTTCATGGTATGTCTATGTGAAGAGAGCTCACACTATTTCTGCTGCATGTGTCAAAGGCACACATTTAGCTTGATATTCTGAATCAGGTATACTTTTGGTATTTTTGTTCGTGAATGGACACTGTTAAGTTTTAACATTTAGCTTGATCCACTACTAAATTAGTTAGAATATCTGGATACATAAAAAAGATCTTTTCATGGATCCTTAAAGATTATTGCTGTTTAATTCATGAATATCCACTCTATTGTGCCTGCTAGGTATACAGAAAGTGATTTGATAAAGCTTGATATTCTCATAAATGGTGATCGTGTCGAACCCTTGGCAACAATCGTACATAAAGATAAGGTAAGGAAGGACGTTGTAACATGTGTTTGTGCTTAAAACGGAATGCAAATTCATGTTAAAGAAATGGAACTACTGCATAAAGTTTTTCTGGTGCACAGTAGAGACAGACTTGGAGCTTTTTCTAATGGAAATGATGTAAAAATTGAATTCGTCCAATGTCAGCTACAGTTTACTGCACTGGAATAACTTCACATGCATGCCTCATGAATATAGGTTAACAAAATGTAACTTCTATCTTCCACATAAGCATTCATTAGATACCTGAAAATAGACTGGCAGGCAATTGTTTATTGATTTTTCTGTTCTTTGTTATTGATGGAATCCAAGTCATTTCCTCGTATAATCTTTTTGACTGTTTATTAATGTCTTCAACCTTTGTACAAAATAAAAACGATTAGTCATTGAGTTACAGTTTGCAGGTATCTTGACTTTCTACTTTATTTACCAATCTGAAATTGTCCATCTTATTTGAGACAAATTATTATCTTGGCACAGATATGATGTAACATTTGCTTTCTCTCTATTTTTTTTTCAGGCATATTCTGTGGGAAGGGCTTTAACCCAAAAGCTGAAAGAACTTATACCCAGACAAATGTTTAAAGTACCAATTCAGGTAGTAAATCTCTTTTCTTAGTTGATCATATTTTTTATTTTTGTGATAATGGATATTAAGAGTTTTCATATTTCACATTATTTTTTTTCATTCGAAGAGGAAGCGATTTTTGCATTTATTCTTGGTAGTTTCTCATTCAAATGATACATATTGTTAGTACATCTTTGCTATGCTTTTCGTGCTTTGATTCTTCTTAAGGAAAAAGCCTTAGTTACTTTTGTTAGGTTCCTACTACTGTCAAATGTGAATTCAGTTAGTTATTGATTTCATATTGCTCTTTCCTGGTTGTTTCATAAAGTATTTAAGTGAATTCTAGGAGAAGTGTATCATCAGTTAGTATGAGTCTCCCTCTAGAGTAGTGCATCATTGTTTGGTACATATTTTACATCAATCTGATTTCATGGGTGTCTTCATTCTATATAGCGAAGGGTTTTGCATAGGCTACACACTATTTTCTTTTCGTGTTCTTTTTCTTTTCTATTTTGAGCTTTACGCTGAATTTTCCTATGCCTTGGAAGAGTGCTTTTGTTGATGATTGAATATACTATACATTTGAAATAGTTATCTATCCTGTGAGAGATATAAATTTAAGTTGATGCAATCTTTCATCTTGCGCTCCCAGCAACTAGTCAATTTCTTCCTCTCTGCTCCCTGTTTTATTCCGTCATTTGGAGAGCAGTCAAAATTATTTCTTAACATGAGTGCTGCATTGTTTTTTCAAACTTATATATTACTTTTTTTGCTACGAAGGATATATGCTTGTTTGAACGTGTACTTTCAGAAAGCATAAGATTATTCATGGAGACTTTTATATGAGCAGCATTCAGCAGACTTTTTTAATAGAGACGTCGTGTGCTATTAATAAACCAAAACATTTCTCAATGACCTAAAAATGTGCACGTTATTGAGCAAAGCTATTAGTAATTTTAAACAACGTGCTATTATGTGTTTAAGTATCTCGACAACATAGATGCAAGGTGAAGCAATGTTGTAGGGAATGCTATTCCCTGTCATAGCTTATTAGTTTTATTGAATGTTTAATTTGTCATGACAGGCAACCATTGGCTCAAAAGTGATTGCCAGCGAGGCAATATCTGCTATCAGGAAGGATGTTCTCGCCAAGTGCTATGGTAAGATTACAAGATTATATTAACAGTATGATATACATATTGAAATCACTTACAAGAATTTTCATTCTGCTGCTCATGATAATCTAGAATTTATGATGTTCACATTGACATGTGTATGATCTCTTAGTTTTTTTTTACATTCCATCTTCGTTCATGTAGGTGGTGACATCTCGAGAAAAAAGAAACTGCTCAAGAAACAGGTACCGTACACTCCTGTTCCCTTAAACAAATGCCTTATGGGACATCGTTATTAGTTACAATTACTCGTGTGCATGGTTAGACTGTATTTCTTAAAATATTCGCTTGTGCTGTTATTAGGGTTATGCTTACCTATGCAAAGAAAATCAAATTATTTACAACAAGATGTTCTTCCCGTTGTGTTAGTTGTGCTATACGTTTAGGTTTGTTATACTACCCATACCTAGAAATCATGTGGCATCTTTTGGAGTTAAGTCTTATACCCAAGCATCAACACTTGTAGAGAATATGGCCTTAAACTACATATGTTGAAGGATTGAGAGCCTATTTAATTGTTGCTTTAGTTTTTTTCTGTGTTTGACGATTCAATTTTAGAAGTGATTTCCACTTCAGACCATAGTATCTGGCAAGTCCCTTTCTGTTTCTGGATATTCAGATCAATCCTAGGGCATATTCCGGTATTTTGAAAGTTGGCGATGACCTACTTCTCTTTTCCCCCCTACATTTCGTGTTTCTTTCCTCTACGGTTCTCCCTTCTGCCTCTGGTGCTACATCATCTTTTAGCTTGTGTTTCTACTCTTTTTTTTTTCTTTAGCAAATCTTGAAAATGTAGTAGTCTGAACCCAGTACCTAGCCCGGTCATGTTTCCAGTTGCTATTGGCCTTCAGTTCTGACCTATTCCATAGTTACTTGAGAATCTTTAATTTGGAGGAAAGCGTTGATTTTTACGGTGCAATAGTACTTATCAACACGTTATATTGATCATTCTTCCCTTACCTGTTTCAATTCAAGTATCTTACTTCCCCTTGTAGTCGTTTTTAAAAGAAATATCTCATTTTATGCTTGGTAACTCTCCACAAGAATCAAAGAACATTTTGGCACATTACACACATTTAGTTTAAAACCACAAGATTCAATATTCTCCATTCTTTTCTTAAACTCCATGTCTACTCAAACTGTGACACTCAAATTGAAAAGGAGGAAGTGATATAAATGAGACAGTAATCCACGCTTACTGTTCAATATTTTGCTTGTGAAATTGTTGCAGTTAACTATGCTTATGTACTCGTATCACTTCTTATGGTGATTTTGTTTACTTGTTGGTGGTATCATTTTTATTTCTGTATTTCCTTTTTCAAACTGCTTTGAAATAATTTTTTTAAACTTGATGGTCTTTCGGAAATAGTCTCTCTATCTCTATGAGGTAGGTGTAAGATCTGCGTACACTCGCTCTCTCCAGACCCACTAGCTGGATTTCACTGAATATGTTGTATGTGAACTGGGGCCGCATGATTATGCATAACGATTTATTTGCTGTATCTTTTCATCAGGCTGAAGGAAAGAAAAGGATGAAAGCCATTGGTAAAGTTGATGTACCACAGGAAGCATTCATGGCTGTATTAAAACTTGAAAAAGAGGTCTTATAATTCATTTTGTTAGTAAAGATTTTTACCGTACATCCTACCCTCGTCAGACCCTATTGGGTTCGCGGGCAAAATGCAGTAAAGAAAGTGGGGACTACATTGATTCTGATATAAATATCATGTGAATAGCTGTATGACCTGGGATTTTTTTAATTTTCTTTTTGAGTTTTTTGCATTATTTCAAACACAGCATTAATGAATAGCTAATTCAGATTGAGAAGTTCCTATTTAAGTGACTTTGTATATAAAGGAG-CAGTTATCTTTTGTTAATTACAGTT</genome_strand>
        <mrna_strand>GAATATATAGGTGCTCTTATGGAACTGGCTCAAGATCGACGAGGAATATTCAAAGAGATGAAATATATTACCGAGAATAGAGCATCTATCATATATGAATTGCCTCTTGCTGAG......................................................................................................................................................................................................................................................................................................................................ATGGTTGGAGATTTCTTTGATCAGCTAAAGTCAAGAAGCAAAGGTTATGCAAGCATGGAATACAACTTCATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACAGAAAGTGATTTGATAAAGCTTGATATTCTCATAAATGGTGATCGTGTCGAACCCTTGGCAACAATCGTACATAAAGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATTCTGTGGGAAGGGCTTTAACCCAAAAGCTGAAAGAACTTATACCCAGACAAATGTTTAAAGTACCAATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCATTGGCTCAAAAGTGATTGCCAGCGAGGCAATATCTGCTATCAGGAAGGATGTTCTCGCCAAGTGCTATG...............................................................................................................................................................GTGGTGACATCTCGAGAAAAAAGAAACTGCTCAAGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGGAAAGAAAAGGATGAAAGCCATTGGTAAAGTTGATGTACCACAGGAAGCATTCATGGCTGTATTAAAACTTGAAAAAGAGGTCTTATAATTCATTTTGTTAGTAAAGATTTTTACCGTACATCCTACCCTCGTCAGACCCTATTGGGTTCGCGGGCAAAATGCAGTAAAGAAAGTGGGGACTACATTGATTCTGATATAAATATCATGTGAATAGCTGTATGACCTGGGATTTTTTTAATTTTCTTTTTGAGTTTTTTGCATTATTTCAAACACAGCATTAATGAATAGCTAATTCAGATTGAGAAGTTCCTATTTAAGTGACTTTGTATATAAAGGAGCCAGTTATCTTTTGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314642" ref_strand="-" ref_description="SGN-E314642 [cTOA-20-P15]">
      <seq>cagctaaagtcaagaagcaaaggttatgcaagcatggaatacactttcattgggtatacagaaagtgatttgataaagctgatatttctcataaatggtgatcgtgtcgaacccttggcaacaatcgtacataaagataaggcatattctgtgggaagggctttaacccaaaagctgaaagaacttatacccagacaaatgtttaaagtaccaattcaggcaaccattggctcaaaagtgattgccagcgaggcaatatctgctatcaggaaggatgttctcgccaagtgctatggtggtgacatctcgagaaaaaagaaactgctcaagaaacaggctgaaggaaagaaaaggatgaaagccattggtaaagttgatgtaccacaggaagcattcatggctgtattaaaacttgaaaaagaggtcttataattcattttgttagtaaagatttttaccgtacatcctaccctcgtcagaccctattgggttcgcgggcaaaatgcagtaaagaaagtggggactacattgattctgatataaatatcatgtgaatagctgtatgacctgggatttttttaattttctttttgagttttttgcattatttcaaacacagcattaatgaatagctaattcagattgagaagttcctatttaagtgactttgtatataaaaaaaaaaaaaaaaaaaactcgagactagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="67477" stop="60453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67177" g_stop="67125" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67124" i_stop="64455" i_length="2670">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.902" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64454" g_stop="64367" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="141" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64366" i_stop="63832" i_length="535">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63831" g_stop="63754" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="219" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63753" i_stop="62700" i_length="1054">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62699" g_stop="62624" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="295" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62623" i_stop="62465" i_length="159">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62464" g_stop="62424" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="336" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62423" i_stop="61095" i_length="1329">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61094" g_stop="60753" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="678" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="679" polyA_stop="696"/>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E314642" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314642" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67177" e_stop="67125"/>
          <exon e_start="64454" e_stop="64367"/>
          <exon e_start="63831" e_stop="63754"/>
          <exon e_start="62699" e_stop="62624"/>
          <exon e_start="62464" e_stop="62424"/>
          <exon e_start="61094" e_stop="60753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTAAAGTCAAGAAGCAAAGGTTATGCAAGCATGGAATACAACTTCATTGGGTAAGTCAATATAATATGCAATATCAAGTCTATCTTTAATGATTTTGATCTCCTAATAATCTGGAACTTACACCCGCTTTTAAATATTAACTCCATGTCGTGTTTTCACTTTTAAGTTCTTTGTAAACAGAGTGAAGTGATGCTTCTATCACTATTGAATTGATTGGGGTAACGAGCATTCAGTTGATTTATTAATTTTTTTCCAAGGTTAAAGACAAATTTGTATCCACTTTTCTTTTTTACGTATCCACTCTCTCTTACATATGAGGAATAGGAGAAGTTCACATGATAAAGGAGAGACGAAATGGTTTAGTGAACCCTTATACTTGTATCAATTTGTATTCTGGACCCTCCTGCTTAATCATTTGTCAATTGAGCCCTTAAACTTAATTAAACACAATTTAACAAATCCCTCTGGCCATTGACCAGACTTGTGTGGAATTAGAATGTCTGAGTTGACAAAAGTGTGTAACTACACTCTTACAGCGAGTGAATGACATTATTGGGTTAAAAAAAAACTAAAATTAAAAAAGAAATAAATTTTAAAAAAACTATTAATTAAAAATTCCTTCTTCTTCACCCACTACACCATCCTTTTTAGTCATTTTCATTCCAAACCTAATCTTTTTTTTTCCTTCTTCAAAATCCTTTTCATCCCAAAACCAATTTTTTTTCCTTCGTCAGAATCTTTTTCAACCATTTCCATCCTAAACCCAACTTTTTTTCCTTCTTCAAAATCTATTAACATCAATTTATCAGATCTTTGATATAATTTAAGTCTATTGATTCACCACTGAGGGAAAAAGCGGTGTTGGTGGTACTCGTCGGAGCACTGAATCGCAGTGGAGTGAGAGAGAAGCGGCGTTGGTGGTGCACGCCGGAGACCAGATCTGATGGTGCGATGACTTAGGTTGTTGATTTTGTGGAGTTGAGGAGGAAAGGAAAATGATGATCGTGCGGTGGAGATGTAGACATGTGAGGATGAGAGTATATTGATTTTCCTGACAAAAATGGCGATGATGACATTCTCCATAGATTTTGGCCATGAAATGGGGAAATCGGATGTATGAATTTTTTATTTTTTCCATTATAGCTCATTAAGAGCTTCACCACTGCTTCCCCTTATTAAACAAATATATCAATAGATCAAACAAAACACATAAAAACATATGAAAATGCAAAACATGAAATTGGAGTAATGAAGTTGACGAAAAAGTTGAACATAAAATGGTGAAATAATACTCTAAAGAATAAATTAAACATTTTATTCTTTTACCTTTAATTAGATAATTTTGATTAACAATTTTAAAAAATAGTTATGAAATAATTATGACATAGAATTAATATATCTCACATAGATATGACATGTCATTTATGTAAAGGAGAATGAGATACACACATGGTTGGAGGGGCTTAAAAGTCTCGTTTTAATTGAGTTTAAGGGTTCAATTGTCCAGAATACAAACTGATACAAGTATAAGGGTCTACCAGACATTTCGCCTAAAGGAGAACAGTATGAAATCTAAAAAGGGCAGCCCGGTGCAATAAGCTCTCGCTATGTGTGGGGTGCAGGGAAGGATGGACCACTAGAGTTCATTATATGCAGTTTTACCCTGTATTTCTGCAATAGGCTGTTTCCGCAGCTCAAATCCGTGACCTCCAGGTCACATGACAACAACTTTACTAGTTAAGCCAAGGGCCCCCTTCAAACGTTATAAAATCTCTTTCCACATAAAATCAGCCTATTGTTATCTTTTGTTATTCCATGAAAATGGTCTTGCTGCAGAAAGAAGATCCCTATTGTTATTCCATCAAAAAATTGTAAAAAGTTTATTGGTAGTTAGGTATTCTAGTTGGAAGTTTTCACTGTCCATGGCATAATAGGTGGAAGCAACAGATGCAATCTAGTGGTATTTACTTTTTTTTTTGGTATCATGACTTTGACTTCAACATTCTAAACCTTACAGTACAGTGGGTCAAAGACCTTTTGTGGGTGTGTTTGGCTGGAAAATGTTTCTTGGAAAACAAGTTGGTTTCTTACTCATTTTCTAGTGTTTGGTAAGTAAGCAAAAAATTGTTATCTCAAGAGTATTTATATGTAATCTAGCAAAAAATGTAGGGGTAGGAGGGGGTGGCGGGATGGGATGGTCAAGGAGTAGGGGTTGGTGGCGTTGGGTGGGCGGGGGATACAATAAAGATAGAAAGTCACTTATAGAACTTGTTTTCCCCACTTCCATCAAGGAAGTCATTTTCCTATTTTTCAGGAACTTCTTTTCCTTGAGAAATTGTTTTCCAAAATTTTTGTCCAACTAAACATGGGAAAATAAGAAACTTTTTCCAGAAAATGTTTTCTTCACTACCAAACACCCACTGTGTTTTCGCATTAAAATTATGAACTCTTTTACATGTGACCTTCATGGTATGTCTATGTGAAGAGAGCTCACACTATTTCTGCTGCATGTGTCAAAGGCACACATTTAGCTTGATATTCTGAATCAGGTATACTTTTGGTATTTTTGTTCGTGAATGGACACTGTTAAGTTTTAACATTTAGCTTGATCCACTACTAAATTAGTTAGAATATCTGGATACATAAAAAAGATCTTTTCATGGATCCTTAAAGATTATTGCTGTTTAATTCATGAATATCCACTCTATTGTGCCTGCTAGGTATACAGAAAGTGATTTGATAAAGCTTGATA-TTCTCATAAATGGTGATCGTGTCGAACCCTTGGCAACAATCGTACATAAAGATAAGGTAAGGAAGGACGTTGTAACATGTGTTTGTGCTTAAAACGGAATGCAAATTCATGTTAAAGAAATGGAACTACTGCATAAAGTTTTTCTGGTGCACAGTAGAGACAGACTTGGAGCTTTTTCTAATGGAAATGATGTAAAAATTGAATTCGTCCAATGTCAGCTACAGTTTACTGCACTGGAATAACTTCACATGCATGCCTCATGAATATAGGTTAACAAAATGTAACTTCTATCTTCCACATAAGCATTCATTAGATACCTGAAAATAGACTGGCAGGCAATTGTTTATTGATTTTTCTGTTCTTTGTTATTGATGGAATCCAAGTCATTTCCTCGTATAATCTTTTTGACTGTTTATTAATGTCTTCAACCTTTGTACAAAATAAAAACGATTAGTCATTGAGTTACAGTTTGCAGGTATCTTGACTTTCTACTTTATTTACCAATCTGAAATTGTCCATCTTATTTGAGACAAATTATTATCTTGGCACAGATATGATGTAACATTTGCTTTCTCTCTATTTTTTTTTCAGGCATATTCTGTGGGAAGGGCTTTAACCCAAAAGCTGAAAGAACTTATACCCAGACAAATGTTTAAAGTACCAATTCAGGTAGTAAATCTCTTTTCTTAGTTGATCATATTTTTTATTTTTGTGATAATGGATATTAAGAGTTTTCATATTTCACATTATTTTTTTTCATTCGAAGAGGAAGCGATTTTTGCATTTATTCTTGGTAGTTTCTCATTCAAATGATACATATTGTTAGTACATCTTTGCTATGCTTTTCGTGCTTTGATTCTTCTTAAGGAAAAAGCCTTAGTTACTTTTGTTAGGTTCCTACTACTGTCAAATGTGAATTCAGTTAGTTATTGATTTCATATTGCTCTTTCCTGGTTGTTTCATAAAGTATTTAAGTGAATTCTAGGAGAAGTGTATCATCAGTTAGTATGAGTCTCCCTCTAGAGTAGTGCATCATTGTTTGGTACATATTTTACATCAATCTGATTTCATGGGTGTCTTCATTCTATATAGCGAAGGGTTTTGCATAGGCTACACACTATTTTCTTTTCGTGTTCTTTTTCTTTTCTATTTTGAGCTTTACGCTGAATTTTCCTATGCCTTGGAAGAGTGCTTTTGTTGATGATTGAATATACTATACATTTGAAATAGTTATCTATCCTGTGAGAGATATAAATTTAAGTTGATGCAATCTTTCATCTTGCGCTCCCAGCAACTAGTCAATTTCTTCCTCTCTGCTCCCTGTTTTATTCCGTCATTTGGAGAGCAGTCAAAATTATTTCTTAACATGAGTGCTGCATTGTTTTTTCAAACTTATATATTACTTTTTTTGCTACGAAGGATATATGCTTGTTTGAACGTGTACTTTCAGAAAGCATAAGATTATTCATGGAGACTTTTATATGAGCAGCATTCAGCAGACTTTTTTAATAGAGACGTCGTGTGCTATTAATAAACCAAAACATTTCTCAATGACCTAAAAATGTGCACGTTATTGAGCAAAGCTATTAGTAATTTTAAACAACGTGCTATTATGTGTTTAAGTATCTCGACAACATAGATGCAAGGTGAAGCAATGTTGTAGGGAATGCTATTCCCTGTCATAGCTTATTAGTTTTATTGAATGTTTAATTTGTCATGACAGGCAACCATTGGCTCAAAAGTGATTGCCAGCGAGGCAATATCTGCTATCAGGAAGGATGTTCTCGCCAAGTGCTATGGTAAGATTACAAGATTATATTAACAGTATGATATACATATTGAAATCACTTACAAGAATTTTCATTCTGCTGCTCATGATAATCTAGAATTTATGATGTTCACATTGACATGTGTATGATCTCTTAGTTTTTTTTTACATTCCATCTTCGTTCATGTAGGTGGTGACATCTCGAGAAAAAAGAAACTGCTCAAGAAACAGGTACCGTACACTCCTGTTCCCTTAAACAAATGCCTTATGGGACATCGTTATTAGTTACAATTACTCGTGTGCATGGTTAGACTGTATTTCTTAAAATATTCGCTTGTGCTGTTATTAGGGTTATGCTTACCTATGCAAAGAAAATCAAATTATTTACAACAAGATGTTCTTCCCGTTGTGTTAGTTGTGCTATACGTTTAGGTTTGTTATACTACCCATACCTAGAAATCATGTGGCATCTTTTGGAGTTAAGTCTTATACCCAAGCATCAACACTTGTAGAGAATATGGCCTTAAACTACATATGTTGAAGGATTGAGAGCCTATTTAATTGTTGCTTTAGTTTTTTTCTGTGTTTGACGATTCAATTTTAGAAGTGATTTCCACTTCAGACCATAGTATCTGGCAAGTCCCTTTCTGTTTCTGGATATTCAGATCAATCCTAGGGCATATTCCGGTATTTTGAAAGTTGGCGATGACCTACTTCTCTTTTCCCCCCTACATTTCGTGTTTCTTTCCTCTACGGTTCTCCCTTCTGCCTCTGGTGCTACATCATCTTTTAGCTTGTGTTTCTACTCTTTTTTTTTTCTTTAGCAAATCTTGAAAATGTAGTAGTCTGAACCCAGTACCTAGCCCGGTCATGTTTCCAGTTGCTATTGGCCTTCAGTTCTGACCTATTCCATAGTTACTTGAGAATCTTTAATTTGGAGGAAAGCGTTGATTTTTACGGTGCAATAGTACTTATCAACACGTTATATTGATCATTCTTCCCTTACCTGTTTCAATTCAAGTATCTTACTTCCCCTTGTAGTCGTTTTTAAAAGAAATATCTCATTTTATGCTTGGTAACTCTCCACAAGAATCAAAGAACATTTTGGCACATTACACACATTTAGTTTAAAACCACAAGATTCAATATTCTCCATTCTTTTCTTAAACTCCATGTCTACTCAAACTGTGACACTCAAATTGAAAAGGAGGAAGTGATATAAATGAGACAGTAATCCACGCTTACTGTTCAATATTTTGCTTGTGAAATTGTTGCAGTTAACTATGCTTATGTACTCGTATCACTTCTTATGGTGATTTTGTTTACTTGTTGGTGGTATCATTTTTATTTCTGTATTTCCTTTTTCAAACTGCTTTGAAATAATTTTTTTAAACTTGATGGTCTTTCGGAAATAGTCTCTCTATCTCTATGAGGTAGGTGTAAGATCTGCGTACACTCGCTCTCTCCAGACCCACTAGCTGGATTTCACTGAATATGTTGTATGTGAACTGGGGCCGCATGATTATGCATAACGATTTATTTGCTGTATCTTTTCATCAGGCTGAAGGAAAGAAAAGGATGAAAGCCATTGGTAAAGTTGATGTACCACAGGAAGCATTCATGGCTGTATTAAAACTTGAAAAAGAGGTCTTATAATTCATTTTGTTAGTAAAGATTTTTACCGTACATCCTACCCTCGTCAGACCCTATTGGGTTCGCGGGCAAAATGCAGTAAAGAAAGTGGGGACTACATTGATTCTGATATAAATATCATGTGAATAGCTGTATGACCTGGGATTTTTTTAATTTTCTTTTTGAGTTTTTTGCATTATTTCAAACACAGCATTAATGAATAGCTAATTCAGATTGAGAAGTTCCTATTTAAGTGACTTTGTATATAAA</genome_strand>
        <mrna_strand>CAGCTAAAGTCAAGAAGCAAAGGTTATGCAAGCATGGAATACACTTTCATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACAGAAAGTGATTTGATAAAGC-TGATATTTCTCATAAATGGTGATCGTGTCGAACCCTTGGCAACAATCGTACATAAAGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATTCTGTGGGAAGGGCTTTAACCCAAAAGCTGAAAGAACTTATACCCAGACAAATGTTTAAAGTACCAATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCATTGGCTCAAAAGTGATTGCCAGCGAGGCAATATCTGCTATCAGGAAGGATGTTCTCGCCAAGTGCTATG...............................................................................................................................................................GTGGTGACATCTCGAGAAAAAAGAAACTGCTCAAGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGGAAAGAAAAGGATGAAAGCCATTGGTAAAGTTGATGTACCACAGGAAGCATTCATGGCTGTATTAAAACTTGAAAAAGAGGTCTTATAATTCATTTTGTTAGTAAAGATTTTTACCGTACATCCTACCCTCGTCAGACCCTATTGGGTTCGCGGGCAAAATGCAGTAAAGAAAGTGGGGACTACATTGATTCTGATATAAATATCATGTGAATAGCTGTATGACCTGGGATTTTTTTAATTTTCTTTTTGAGTTTTTTGCATTATTTCAAACACAGCATTAATGAATAGCTAATTCAGATTGAGAAGTTCCTATTTAAGTGACTTTGTATATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291512" ref_strand="+" ref_description="SGN-E291512 [cLET-6-E19]">
      <seq>aaatggtgatcgtgtcgaacccttggcaacaatcgtacataaagataaggcatattctgtgggaagggctttaacccaaaagctgaaagaacttatacccagacaaatgtttaaagtaccaattcaggcaaccattggctcaaaagtgattgccagcgaggcaatatctgctatcaggaaggatgttctcgccaagtgctatggtggtgacatctcgagaaaaaagaaactgctcaagaaacaggctgaaggaaagaaaaggatgaaagccattggtaaagttgatgtaccacaggaagcattcatggctgtattaaaacttgaaaaagaggtcttataattcattttgttagtaaagatttttaccgtacatcctaccctcgtcagaccctattgggttcgcgggcaaaatgcagtaaagaaagtggggactacattgattctgatataaatatcatgtgaatagctgtatgacctgggatttttttaattttctttttgagttttttgcattatttcaaacacagcattaatgaatagctaattcagattgagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="64715" stop="60482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64415" g_stop="64367" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64366" i_stop="63832" i_length="535">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63831" g_stop="63754" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="127" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63753" i_stop="62700" i_length="1054">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62699" g_stop="62624" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="203" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62623" i_stop="62465" i_length="159">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62464" g_stop="62424" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="244" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62423" i_stop="61095" i_length="1329">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61094" g_stop="60782" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="557" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E291512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64415" e_stop="64367"/>
          <exon e_start="63831" e_stop="63754"/>
          <exon e_start="62699" e_stop="62624"/>
          <exon e_start="62464" e_stop="62424"/>
          <exon e_start="61094" e_stop="60782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGTGATCGTGTCGAACCCTTGGCAACAATCGTACATAAAGATAAGGTAAGGAAGGACGTTGTAACATGTGTTTGTGCTTAAAACGGAATGCAAATTCATGTTAAAGAAATGGAACTACTGCATAAAGTTTTTCTGGTGCACAGTAGAGACAGACTTGGAGCTTTTTCTAATGGAAATGATGTAAAAATTGAATTCGTCCAATGTCAGCTACAGTTTACTGCACTGGAATAACTTCACATGCATGCCTCATGAATATAGGTTAACAAAATGTAACTTCTATCTTCCACATAAGCATTCATTAGATACCTGAAAATAGACTGGCAGGCAATTGTTTATTGATTTTTCTGTTCTTTGTTATTGATGGAATCCAAGTCATTTCCTCGTATAATCTTTTTGACTGTTTATTAATGTCTTCAACCTTTGTACAAAATAAAAACGATTAGTCATTGAGTTACAGTTTGCAGGTATCTTGACTTTCTACTTTATTTACCAATCTGAAATTGTCCATCTTATTTGAGACAAATTATTATCTTGGCACAGATATGATGTAACATTTGCTTTCTCTCTATTTTTTTTTCAGGCATATTCTGTGGGAAGGGCTTTAACCCAAAAGCTGAAAGAACTTATACCCAGACAAATGTTTAAAGTACCAATTCAGGTAGTAAATCTCTTTTCTTAGTTGATCATATTTTTTATTTTTGTGATAATGGATATTAAGAGTTTTCATATTTCACATTATTTTTTTTCATTCGAAGAGGAAGCGATTTTTGCATTTATTCTTGGTAGTTTCTCATTCAAATGATACATATTGTTAGTACATCTTTGCTATGCTTTTCGTGCTTTGATTCTTCTTAAGGAAAAAGCCTTAGTTACTTTTGTTAGGTTCCTACTACTGTCAAATGTGAATTCAGTTAGTTATTGATTTCATATTGCTCTTTCCTGGTTGTTTCATAAAGTATTTAAGTGAATTCTAGGAGAAGTGTATCATCAGTTAGTATGAGTCTCCCTCTAGAGTAGTGCATCATTGTTTGGTACATATTTTACATCAATCTGATTTCATGGGTGTCTTCATTCTATATAGCGAAGGGTTTTGCATAGGCTACACACTATTTTCTTTTCGTGTTCTTTTTCTTTTCTATTTTGAGCTTTACGCTGAATTTTCCTATGCCTTGGAAGAGTGCTTTTGTTGATGATTGAATATACTATACATTTGAAATAGTTATCTATCCTGTGAGAGATATAAATTTAAGTTGATGCAATCTTTCATCTTGCGCTCCCAGCAACTAGTCAATTTCTTCCTCTCTGCTCCCTGTTTTATTCCGTCATTTGGAGAGCAGTCAAAATTATTTCTTAACATGAGTGCTGCATTGTTTTTTCAAACTTATATATTACTTTTTTTGCTACGAAGGATATATGCTTGTTTGAACGTGTACTTTCAGAAAGCATAAGATTATTCATGGAGACTTTTATATGAGCAGCATTCAGCAGACTTTTTTAATAGAGACGTCGTGTGCTATTAATAAACCAAAACATTTCTCAATGACCTAAAAATGTGCACGTTATTGAGCAAAGCTATTAGTAATTTTAAACAACGTGCTATTATGTGTTTAAGTATCTCGACAACATAGATGCAAGGTGAAGCAATGTTGTAGGGAATGCTATTCCCTGTCATAGCTTATTAGTTTTATTGAATGTTTAATTTGTCATGACAGGCAACCATTGGCTCAAAAGTGATTGCCAGCGAGGCAATATCTGCTATCAGGAAGGATGTTCTCGCCAAGTGCTATGGTAAGATTACAAGATTATATTAACAGTATGATATACATATTGAAATCACTTACAAGAATTTTCATTCTGCTGCTCATGATAATCTAGAATTTATGATGTTCACATTGACATGTGTATGATCTCTTAGTTTTTTTTTACATTCCATCTTCGTTCATGTAGGTGGTGACATCTCGAGAAAAAAGAAACTGCTCAAGAAACAGGTACCGTACACTCCTGTTCCCTTAAACAAATGCCTTATGGGACATCGTTATTAGTTACAATTACTCGTGTGCATGGTTAGACTGTATTTCTTAAAATATTCGCTTGTGCTGTTATTAGGGTTATGCTTACCTATGCAAAGAAAATCAAATTATTTACAACAAGATGTTCTTCCCGTTGTGTTAGTTGTGCTATACGTTTAGGTTTGTTATACTACCCATACCTAGAAATCATGTGGCATCTTTTGGAGTTAAGTCTTATACCCAAGCATCAACACTTGTAGAGAATATGGCCTTAAACTACATATGTTGAAGGATTGAGAGCCTATTTAATTGTTGCTTTAGTTTTTTTCTGTGTTTGACGATTCAATTTTAGAAGTGATTTCCACTTCAGACCATAGTATCTGGCAAGTCCCTTTCTGTTTCTGGATATTCAGATCAATCCTAGGGCATATTCCGGTATTTTGAAAGTTGGCGATGACCTACTTCTCTTTTCCCCCCTACATTTCGTGTTTCTTTCCTCTACGGTTCTCCCTTCTGCCTCTGGTGCTACATCATCTTTTAGCTTGTGTTTCTACTCTTTTTTTTTTCTTTAGCAAATCTTGAAAATGTAGTAGTCTGAACCCAGTACCTAGCCCGGTCATGTTTCCAGTTGCTATTGGCCTTCAGTTCTGACCTATTCCATAGTTACTTGAGAATCTTTAATTTGGAGGAAAGCGTTGATTTTTACGGTGCAATAGTACTTATCAACACGTTATATTGATCATTCTTCCCTTACCTGTTTCAATTCAAGTATCTTACTTCCCCTTGTAGTCGTTTTTAAAAGAAATATCTCATTTTATGCTTGGTAACTCTCCACAAGAATCAAAGAACATTTTGGCACATTACACACATTTAGTTTAAAACCACAAGATTCAATATTCTCCATTCTTTTCTTAAACTCCATGTCTACTCAAACTGTGACACTCAAATTGAAAAGGAGGAAGTGATATAAATGAGACAGTAATCCACGCTTACTGTTCAATATTTTGCTTGTGAAATTGTTGCAGTTAACTATGCTTATGTACTCGTATCACTTCTTATGGTGATTTTGTTTACTTGTTGGTGGTATCATTTTTATTTCTGTATTTCCTTTTTCAAACTGCTTTGAAATAATTTTTTTAAACTTGATGGTCTTTCGGAAATAGTCTCTCTATCTCTATGAGGTAGGTGTAAGATCTGCGTACACTCGCTCTCTCCAGACCCACTAGCTGGATTTCACTGAATATGTTGTATGTGAACTGGGGCCGCATGATTATGCATAACGATTTATTTGCTGTATCTTTTCATCAGGCTGAAGGAAAGAAAAGGATGAAAGCCATTGGTAAAGTTGATGTACCACAGGAAGCATTCATGGCTGTATTAAAACTTGAAAAAGAGGTCTTATAATTCATTTTGTTAGTAAAGATTTTTACCGTACATCCTACCCTCGTCAGACCCTATTGGGTTCGCGGGCAAAATGCAGTAAAGAAAGTGGGGACTACATTGATTCTGATATAAATATCATGTGAATAGCTGTATGACCTGGGATTTTTTTAATTTTCTTTTTGAGTTTTTTGCATTATTTCAAACACAGCATTAATGAATAGCTAATTCAGATTGAGAA</genome_strand>
        <mrna_strand>AAATGGTGATCGTGTCGAACCCTTGGCAACAATCGTACATAAAGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATTCTGTGGGAAGGGCTTTAACCCAAAAGCTGAAAGAACTTATACCCAGACAAATGTTTAAAGTACCAATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCATTGGCTCAAAAGTGATTGCCAGCGAGGCAATATCTGCTATCAGGAAGGATGTTCTCGCCAAGTGCTATG...............................................................................................................................................................GTGGTGACATCTCGAGAAAAAAGAAACTGCTCAAGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGGAAAGAAAAGGATGAAAGCCATTGGTAAAGTTGATGTACCACAGGAAGCATTCATGGCTGTATTAAAACTTGAAAAAGAGGTCTTATAATTCATTTTGTTAGTAAAGATTTTTACCGTACATCCTACCCTCGTCAGACCCTATTGGGTTCGCGGGCAAAATGCAGTAAAGAAAGTGGGGACTACATTGATTCTGATATAAATATCATGTGAATAGCTGTATGACCTGGGATTTTTTTAATTTTCTTTTTGAGTTTTTTGCATTATTTCAAACACAGCATTAATGAATAGCTAATTCAGATTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288530" ref_strand="+" ref_description="SGN-E288530 [cLES-8-L20]">
      <seq>tgaaagaacttatacccagacaaatgtttaaagtaccaattcaggcaaccattggctcaaaagtgattgccagcgaggcaatatctgctatcaggaaggatgttctcgccaagtgctatggtggtgacatctcgagaaaaaagaaactgctcaagaaacaggctgaaggaaagaaaaggatgaaagccattggtaaagttgatgtaccacaggaagcattcatggctgtattaaaacttgaaaaagaggtcttataattcattttgttagtaaagatttttaccgtacatcctaccctcgtcagaccctattgggttcgcgggcaaaatgcagtaaagaaagtggggactacattgattctgatataaatatcatgtgaatagctgtatgacctgngatttttttaattttctttttgagttttttgcattatttcaaacacagcattaatgaatagctaattcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="64097" stop="60489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63797" g_stop="63754" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63753" i_stop="62700" i_length="1054">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62699" g_stop="62624" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="120" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62623" i_stop="62465" i_length="159">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62464" g_stop="62424" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="161" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62423" i_stop="61095" i_length="1329">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61094" g_stop="60789" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="467" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E288530" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63797" e_stop="63754"/>
          <exon e_start="62699" e_stop="62624"/>
          <exon e_start="62464" e_stop="62424"/>
          <exon e_start="61094" e_stop="60789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGAACTTATACCCAGACAAATGTTTAAAGTACCAATTCAGGTAGTAAATCTCTTTTCTTAGTTGATCATATTTTTTATTTTTGTGATAATGGATATTAAGAGTTTTCATATTTCACATTATTTTTTTTCATTCGAAGAGGAAGCGATTTTTGCATTTATTCTTGGTAGTTTCTCATTCAAATGATACATATTGTTAGTACATCTTTGCTATGCTTTTCGTGCTTTGATTCTTCTTAAGGAAAAAGCCTTAGTTACTTTTGTTAGGTTCCTACTACTGTCAAATGTGAATTCAGTTAGTTATTGATTTCATATTGCTCTTTCCTGGTTGTTTCATAAAGTATTTAAGTGAATTCTAGGAGAAGTGTATCATCAGTTAGTATGAGTCTCCCTCTAGAGTAGTGCATCATTGTTTGGTACATATTTTACATCAATCTGATTTCATGGGTGTCTTCATTCTATATAGCGAAGGGTTTTGCATAGGCTACACACTATTTTCTTTTCGTGTTCTTTTTCTTTTCTATTTTGAGCTTTACGCTGAATTTTCCTATGCCTTGGAAGAGTGCTTTTGTTGATGATTGAATATACTATACATTTGAAATAGTTATCTATCCTGTGAGAGATATAAATTTAAGTTGATGCAATCTTTCATCTTGCGCTCCCAGCAACTAGTCAATTTCTTCCTCTCTGCTCCCTGTTTTATTCCGTCATTTGGAGAGCAGTCAAAATTATTTCTTAACATGAGTGCTGCATTGTTTTTTCAAACTTATATATTACTTTTTTTGCTACGAAGGATATATGCTTGTTTGAACGTGTACTTTCAGAAAGCATAAGATTATTCATGGAGACTTTTATATGAGCAGCATTCAGCAGACTTTTTTAATAGAGACGTCGTGTGCTATTAATAAACCAAAACATTTCTCAATGACCTAAAAATGTGCACGTTATTGAGCAAAGCTATTAGTAATTTTAAACAACGTGCTATTATGTGTTTAAGTATCTCGACAACATAGATGCAAGGTGAAGCAATGTTGTAGGGAATGCTATTCCCTGTCATAGCTTATTAGTTTTATTGAATGTTTAATTTGTCATGACAGGCAACCATTGGCTCAAAAGTGATTGCCAGCGAGGCAATATCTGCTATCAGGAAGGATGTTCTCGCCAAGTGCTATGGTAAGATTACAAGATTATATTAACAGTATGATATACATATTGAAATCACTTACAAGAATTTTCATTCTGCTGCTCATGATAATCTAGAATTTATGATGTTCACATTGACATGTGTATGATCTCTTAGTTTTTTTTTACATTCCATCTTCGTTCATGTAGGTGGTGACATCTCGAGAAAAAAGAAACTGCTCAAGAAACAGGTACCGTACACTCCTGTTCCCTTAAACAAATGCCTTATGGGACATCGTTATTAGTTACAATTACTCGTGTGCATGGTTAGACTGTATTTCTTAAAATATTCGCTTGTGCTGTTATTAGGGTTATGCTTACCTATGCAAAGAAAATCAAATTATTTACAACAAGATGTTCTTCCCGTTGTGTTAGTTGTGCTATACGTTTAGGTTTGTTATACTACCCATACCTAGAAATCATGTGGCATCTTTTGGAGTTAAGTCTTATACCCAAGCATCAACACTTGTAGAGAATATGGCCTTAAACTACATATGTTGAAGGATTGAGAGCCTATTTAATTGTTGCTTTAGTTTTTTTCTGTGTTTGACGATTCAATTTTAGAAGTGATTTCCACTTCAGACCATAGTATCTGGCAAGTCCCTTTCTGTTTCTGGATATTCAGATCAATCCTAGGGCATATTCCGGTATTTTGAAAGTTGGCGATGACCTACTTCTCTTTTCCCCCCTACATTTCGTGTTTCTTTCCTCTACGGTTCTCCCTTCTGCCTCTGGTGCTACATCATCTTTTAGCTTGTGTTTCTACTCTTTTTTTTTTCTTTAGCAAATCTTGAAAATGTAGTAGTCTGAACCCAGTACCTAGCCCGGTCATGTTTCCAGTTGCTATTGGCCTTCAGTTCTGACCTATTCCATAGTTACTTGAGAATCTTTAATTTGGAGGAAAGCGTTGATTTTTACGGTGCAATAGTACTTATCAACACGTTATATTGATCATTCTTCCCTTACCTGTTTCAATTCAAGTATCTTACTTCCCCTTGTAGTCGTTTTTAAAAGAAATATCTCATTTTATGCTTGGTAACTCTCCACAAGAATCAAAGAACATTTTGGCACATTACACACATTTAGTTTAAAACCACAAGATTCAATATTCTCCATTCTTTTCTTAAACTCCATGTCTACTCAAACTGTGACACTCAAATTGAAAAGGAGGAAGTGATATAAATGAGACAGTAATCCACGCTTACTGTTCAATATTTTGCTTGTGAAATTGTTGCAGTTAACTATGCTTATGTACTCGTATCACTTCTTATGGTGATTTTGTTTACTTGTTGGTGGTATCATTTTTATTTCTGTATTTCCTTTTTCAAACTGCTTTGAAATAATTTTTTTAAACTTGATGGTCTTTCGGAAATAGTCTCTCTATCTCTATGAGGTAGGTGTAAGATCTGCGTACACTCGCTCTCTCCAGACCCACTAGCTGGATTTCACTGAATATGTTGTATGTGAACTGGGGCCGCATGATTATGCATAACGATTTATTTGCTGTATCTTTTCATCAGGCTGAAGGAAAGAAAAGGATGAAAGCCATTGGTAAAGTTGATGTACCACAGGAAGCATTCATGGCTGTATTAAAACTTGAAAAAGAGGTCTTATAATTCATTTTGTTAGTAAAGATTTTTACCGTACATCCTACCCTCGTCAGACCCTATTGGGTTCGCGGGCAAAATGCAGTAAAGAAAGTGGGGACTACATTGATTCTGATATAAATATCATGTGAATAGCTGTATGACCTGGGATTTTTTTAATTTTCTTTTTGAGTTTTTTGCATTATTTCAAACACAGCATTAATGAATAGCTAATTCAGA</genome_strand>
        <mrna_strand>TGAAAGAACTTATACCCAGACAAATGTTTAAAGTACCAATTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCATTGGCTCAAAAGTGATTGCCAGCGAGGCAATATCTGCTATCAGGAAGGATGTTCTCGCCAAGTGCTATG...............................................................................................................................................................GTGGTGACATCTCGAGAAAAAAGAAACTGCTCAAGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGGAAAGAAAAGGATGAAAGCCATTGGTAAAGTTGATGTACCACAGGAAGCATTCATGGCTGTATTAAAACTTGAAAAAGAGGTCTTATAATTCATTTTGTTAGTAAAGATTTTTACCGTACATCCTACCCTCGTCAGACCCTATTGGGTTCGCGGGCAAAATGCAGTAAAGAAAGTGGGGACTACATTGATTCTGATATAAATATCATGTGAATAGCTGTATGACCTGNGATTTTTTTAATTTTCTTTTTGAGTTTTTTGCATTATTTCAAACACAGCATTAATGAATAGCTAATTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738694" ref_strand="+" ref_description="SGN-E738694 [LC14CE12]">
      <seq>gttactatgatccatatcggggcgttattgtttattttcgagtcattgatgggactattaagaaaggtgatagagtgctttttatggccagtgggaaggattattatgctgatgaattaggagttttatctcccaaccagttgcaagttgatcaattatacgctggagaggtggggtttctttcagcctccataagatccgtagctgatgctagggtgggtgacaccataacacacttccagagaaaagcagaacaatcattaccgggatacaaggaggctactccaatggttttttgtggcttgttccctgttgatgccgaccagtttagtgagctacgtgatgcgttggagaaattgcaacttaatgatgctgcattgaagtttgagccagagacttcaagtgctatgggttttggatttcgatgtgggtttttgggtcttcttcacatggaaattgttcaggaaaggctcgagcgcgagtacaatttgtctctaataactacagccccaagtgttgtttacagagtccattgcatagatggtgatactgttgagtgttcaaatccatctttgcttcctgaacctggaaaaagacggtcaattgaagagccatttgttaagattgagctgctcacaccaaaagaatatataggtgctcttatggaactggctcaagatcgacgaggaatattcaaagagatgaaatatattaccgagaatagagcatctatcatatatgaattgcctcttgctgagatggttggagatttctttgatcagctaaagtcaaagagcaaaggttatgcaagcatggaatacaacttcattgggtatacagaaagtgatttgataaagcttgatattctcataaatggtgatcgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="70847" stop="64101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70547" g_stop="70450" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70449" i_stop="69733" i_length="717">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69732" g_stop="69661" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="170" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69660" i_stop="69240" i_length="421">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69239" g_stop="69085" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="325" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69084" i_stop="68999" i_length="86">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68998" g_stop="68941" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="383" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68940" i_stop="68528" i_length="413">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68527" g_stop="68447" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="464" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68446" i_stop="68346" i_length="101">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68345" g_stop="68259" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="551" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68258" i_stop="67828" i_length="431">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67827" g_stop="67756" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="623" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67755" i_stop="67660" i_length="96">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67659" g_stop="67525" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="758" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="67524" i_stop="67199" i_length="326">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="67198" g_stop="67125" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="832" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="67124" i_stop="64455" i_length="2670">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="64454" g_stop="64401" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="886" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E738694" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70547" e_stop="70450"/>
          <exon e_start="69732" e_stop="69661"/>
          <exon e_start="69239" e_stop="69085"/>
          <exon e_start="68998" e_stop="68941"/>
          <exon e_start="68527" e_stop="68447"/>
          <exon e_start="68345" e_stop="68259"/>
          <exon e_start="67827" e_stop="67756"/>
          <exon e_start="67659" e_stop="67525"/>
          <exon e_start="67198" e_stop="67125"/>
          <exon e_start="64454" e_stop="64401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTATGATCCATATCGGGGCGTTATTGTTTATTTTCGAGTCATTGATGGGACTATTAAGAAAGGTGATAGAGTGCTTTTTATGGCCAGTGGGAAGGTATTTCTTAATATATACTTAACCTTTTATTTTGTACCTGGTGGTCATTTGGAGAATCATCATCTAACATTCTGTGATATAGTTGCGATTCTATGTGCTCCACTGTTGAGAATAATAATCTGACTTATTGTTCGATAAGAAAGACCTGATTTGCTACCCAAGGAGAATGTAAAGCAAGAACAGTTTGTAGGCAGTTAACAACTAAGCCGATGTGTGTGAAAAAAACTAATCTTTTAGAGTTCATAAGCTTTTTTTCCCCTTACAATAAGGGGTTCAATGCTATTAACTCCTAATCTGTGTTAAAAGAAATCTTGTACAAGAAATAGTATGCTTTCATCCCATAGAATTAGTAGTTCAGTCTACCTTCAAATCTTCAATAACCCCTTGGATCTGATGAATATTAATAACCTCTTGATGTCTTAAAGAATCAGACATACTCTGAGGTACAACCTTACTGATGGAAAACTATTCCTATGATAATCTTCTTCTTTTTTTCTTTTAGTTTTCTGATTAGGGTCTATGTCTTAAATTTTGAAGGCATCTTGTTCTGGAGTGCTATATCGATCTTTACTTAGATCCTCTTTTCTTATGTACGAGGATTTTTTTTAATTCTTTACCAATGACCTTCTCAGTTTTCTGAACTCATTCTGTTCTCTTTTTTGGTTGATGGATAAATCACAATATCTGTTGGCTTATTCTCAACTACAACAAATGCAGGATTATTATGCTGATGAATTAGGAGTTTTATCTCCCAACCAGTTGCAAGTTGATCAATTATACGCTGGAGAGGTAAAAATATCTTATCTGACTTATTTAATTCCACAACCTTGAAAACCAAGATAGACAGATTTGATTCTACAGTTAATTATTGAGAAATCATACTCAACAGTGACAAAAATCACTAGGTAATTTCTTCCCATCTATCTAAGCCTTGATGGCCAAAGTTACTCCGTAGCTTTGCTGGTGGGGGTCAGGTGCTTGGTGGAATAATCGAGGTGCCCACAGGGTGGCTCAGACACCACTATTGTGATAAAATTATCGAGAAATCAATGCGTCAAAGTATTGCAAATCATTGAAAAACGAAAAAGAAACTAATAATTGATTTGACAAACATTAACAAATCATGATAGGGTACCTTCAAATTTTCATTTTAAATAGGTCAATTTTCTTTAAATGATGGGATTGTAAGATTTTCAGTTTATCATTTCAGGTGGGGTTTCTTTCAGCCTCCATAAGATCCGTAGCTGATGCTAGGGTGGGTGACACCATAACACACTTCCAGAGAAAAGCAGAACAATCATTACCGGGATACAAGGAGGCTACTCCAATGGTTTTTTGTGGCTTGTTCCCTGTTGATGCCGACCAGTATATTTCTATTTATAAACTTTATTTAATATATATATGAATTCGAATAGATTTTCCCCTATAAACGGTTATCAATATTCCTGCAGGTTTAGTGAGCTACGTGATGCGTTGGAGAAATTGCAACTTAATGATGCTGCATTGAAGGTAATTTTTTTTTGGTCTTACATTATAAATTCTGACAGTTTTTGTTGTGTTCCTGAACTTTCTCGCAGCAACGCTTTTGAAAACTTATGAAGCTTTATTTTTGTAGTCAGTGTTCATAATCTTGTGCATCATGTGTCCTCTGTTTTACAGTGGCTTTTATGATATACTCCCTATGTTTCAATTTATATTGGAAATGTTGGTTATGTTCATATATATATGCATTCACAGCATTCGTCCCCATTATGATCCTTTGCCAAATATTGTTTAATAAATTTTGCAGATTGATGCATATTCTTGTGTACTAACCATTTTATCTTCCTTTTTTACTTAAAACAATTGTTAAGGATATTTTTCATCAACTTGGAAGTTGCAAATTTGTGTAAGATCTTTCTCTCATAATTCCAAATGTGCAGTTTGAGCCAGAGACTTCAAGTGCTATGGGTTTTGGATTTCGATGTGGGTTTTTGGGTCTTCTTCACATGGAAATTGTTCAGGTCAGAATAATGTTTGTGTTAACTTCTATGTTAATAACTAGGTTAGGTTTTACTTGATGTCTGTGCTTCTCATGTGCTCTGATAAACTTTTGTTTCACCAGGAAAGGCTCGAGCGCGAGTACAATTTGTCTCTAATAACTACAGCCCCAAGTGTTGTTTACAGAGTCCATTGCATAGATGGTGATACTGTAACATCTCTTGCCCTGTACTCATCTTTTTATACTGAGTTGTGCCTCTTTGTTCCGATGAAATTGTCAGAGCTTAGCTCTAAATGTTGACTTTTTTCAGAGTATTATAAATTGTTCATCTCTTAAAGTTTTTCATCCTTTCAAGCAGTATATGTTCATGTTCCAATATTGCTGCTTTGTATGGGAGACTTTCTTTTGATGTTTATAAATAGTTCATTGCTTAAGTTTTTCATCCTTTCAAGCAGTATATGTTCATGTTCCAATATTGCTACTTTGTATGGGAGATTGTCTTTTGATGTTTATAAATAGTTCATTGCTTAAGTTTTTCATCCTTTCAAGCAGTATATGTTCATGTTCCAATATCGCTACTTTGTATGGGAGACTGCTTTTTGATGTTATGTTTTTATATGCATGTATCTGATCTGATCCAGGTTGAGTGTTCAAATCCATCTTTGCTTCCTGAACCTGGAAAAAGACGGTCAATTGAAGAGCCATTTGTTAAGGTTACTCTCTGAATTCCCGACTCCTCTAATTTGTATTTTGTATGCGGTCTCACTTCTAACTAGTTGGGCATCTGCTTGTGATTCTTCTCCACACAGATTGAGCTGCTCACACCAAAAGAATATATAGGTGCTCTTATGGAACTGGCTCAAGATCGACGAGGAATATTCAAAGAGATGAAATATATTACCGAGAATAGAGCATCTATCATATATGAATTGCCTCTTGCTGAGGTACTATTTTGTAACTAGTTAACCAGTGCTCTGATCTAGCGCCCTTGTATATTGTAAAAGGGGGAGGGTACAAAACATACATGTCCAAAGGATGTAAAATTTGGGTGGCTGTCGTCTTGTTCACTAGTTGTTTTGGTACTTCGCTATTTATGCTGTGTATTCATTTTTTAAGGATTCCATGATGAATTTTGTTTCCTTTTTATTTTATTTTGTTTTTTTAATCATGGAATAATTTCATTTTTCTTTTGCTTTTATGTAAGAACATGTATGAATGTTGAGCAGGGTCTTTCTTTATCCGGTTATGATATTTCAATTTTCTTCGCCAGATGGTTGGAGATTTCTTTGATCAGCTAAAGTCAAGAAGCAAAGGTTATGCAAGCATGGAATACAACTTCATTGGGTAAGTCAATATAATATGCAATATCAAGTCTATCTTTAATGATTTTGATCTCCTAATAATCTGGAACTTACACCCGCTTTTAAATATTAACTCCATGTCGTGTTTTCACTTTTAAGTTCTTTGTAAACAGAGTGAAGTGATGCTTCTATCACTATTGAATTGATTGGGGTAACGAGCATTCAGTTGATTTATTAATTTTTTTCCAAGGTTAAAGACAAATTTGTATCCACTTTTCTTTTTTACGTATCCACTCTCTCTTACATATGAGGAATAGGAGAAGTTCACATGATAAAGGAGAGACGAAATGGTTTAGTGAACCCTTATACTTGTATCAATTTGTATTCTGGACCCTCCTGCTTAATCATTTGTCAATTGAGCCCTTAAACTTAATTAAACACAATTTAACAAATCCCTCTGGCCATTGACCAGACTTGTGTGGAATTAGAATGTCTGAGTTGACAAAAGTGTGTAACTACACTCTTACAGCGAGTGAATGACATTATTGGGTTAAAAAAAAACTAAAATTAAAAAAGAAATAAATTTTAAAAAAACTATTAATTAAAAATTCCTTCTTCTTCACCCACTACACCATCCTTTTTAGTCATTTTCATTCCAAACCTAATCTTTTTTTTTCCTTCTTCAAAATCCTTTTCATCCCAAAACCAATTTTTTTTCCTTCGTCAGAATCTTTTTCAACCATTTCCATCCTAAACCCAACTTTTTTTCCTTCTTCAAAATCTATTAACATCAATTTATCAGATCTTTGATATAATTTAAGTCTATTGATTCACCACTGAGGGAAAAAGCGGTGTTGGTGGTACTCGTCGGAGCACTGAATCGCAGTGGAGTGAGAGAGAAGCGGCGTTGGTGGTGCACGCCGGAGACCAGATCTGATGGTGCGATGACTTAGGTTGTTGATTTTGTGGAGTTGAGGAGGAAAGGAAAATGATGATCGTGCGGTGGAGATGTAGACATGTGAGGATGAGAGTATATTGATTTTCCTGACAAAAATGGCGATGATGACATTCTCCATAGATTTTGGCCATGAAATGGGGAAATCGGATGTATGAATTTTTTATTTTTTCCATTATAGCTCATTAAGAGCTTCACCACTGCTTCCCCTTATTAAACAAATATATCAATAGATCAAACAAAACACATAAAAACATATGAAAATGCAAAACATGAAATTGGAGTAATGAAGTTGACGAAAAAGTTGAACATAAAATGGTGAAATAATACTCTAAAGAATAAATTAAACATTTTATTCTTTTACCTTTAATTAGATAATTTTGATTAACAATTTTAAAAAATAGTTATGAAATAATTATGACATAGAATTAATATATCTCACATAGATATGACATGTCATTTATGTAAAGGAGAATGAGATACACACATGGTTGGAGGGGCTTAAAAGTCTCGTTTTAATTGAGTTTAAGGGTTCAATTGTCCAGAATACAAACTGATACAAGTATAAGGGTCTACCAGACATTTCGCCTAAAGGAGAACAGTATGAAATCTAAAAAGGGCAGCCCGGTGCAATAAGCTCTCGCTATGTGTGGGGTGCAGGGAAGGATGGACCACTAGAGTTCATTATATGCAGTTTTACCCTGTATTTCTGCAATAGGCTGTTTCCGCAGCTCAAATCCGTGACCTCCAGGTCACATGACAACAACTTTACTAGTTAAGCCAAGGGCCCCCTTCAAACGTTATAAAATCTCTTTCCACATAAAATCAGCCTATTGTTATCTTTTGTTATTCCATGAAAATGGTCTTGCTGCAGAAAGAAGATCCCTATTGTTATTCCATCAAAAAATTGTAAAAAGTTTATTGGTAGTTAGGTATTCTAGTTGGAAGTTTTCACTGTCCATGGCATAATAGGTGGAAGCAACAGATGCAATCTAGTGGTATTTACTTTTTTTTTTGGTATCATGACTTTGACTTCAACATTCTAAACCTTACAGTACAGTGGGTCAAAGACCTTTTGTGGGTGTGTTTGGCTGGAAAATGTTTCTTGGAAAACAAGTTGGTTTCTTACTCATTTTCTAGTGTTTGGTAAGTAAGCAAAAAATTGTTATCTCAAGAGTATTTATATGTAATCTAGCAAAAAATGTAGGGGTAGGAGGGGGTGGCGGGATGGGATGGTCAAGGAGTAGGGGTTGGTGGCGTTGGGTGGGCGGGGGATACAATAAAGATAGAAAGTCACTTATAGAACTTGTTTTCCCCACTTCCATCAAGGAAGTCATTTTCCTATTTTTCAGGAACTTCTTTTCCTTGAGAAATTGTTTTCCAAAATTTTTGTCCAACTAAACATGGGAAAATAAGAAACTTTTTCCAGAAAATGTTTTCTTCACTACCAAACACCCACTGTGTTTTCGCATTAAAATTATGAACTCTTTTACATGTGACCTTCATGGTATGTCTATGTGAAGAGAGCTCACACTATTTCTGCTGCATGTGTCAAAGGCACACATTTAGCTTGATATTCTGAATCAGGTATACTTTTGGTATTTTTGTTCGTGAATGGACACTGTTAAGTTTTAACATTTAGCTTGATCCACTACTAAATTAGTTAGAATATCTGGATACATAAAAAAGATCTTTTCATGGATCCTTAAAGATTATTGCTGTTTAATTCATGAATATCCACTCTATTGTGCCTGCTAGGTATACAGAAAGTGATTTGATAAAGCTTGATATTCTCATAAATGGTGATCGTGT</genome_strand>
        <mrna_strand>GTTACTATGATCCATATCGGGGCGTTATTGTTTATTTTCGAGTCATTGATGGGACTATTAAGAAAGGTGATAGAGTGCTTTTTATGGCCAGTGGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATTATGCTGATGAATTAGGAGTTTTATCTCCCAACCAGTTGCAAGTTGATCAATTATACGCTGGAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGTTTCTTTCAGCCTCCATAAGATCCGTAGCTGATGCTAGGGTGGGTGACACCATAACACACTTCCAGAGAAAAGCAGAACAATCATTACCGGGATACAAGGAGGCTACTCCAATGGTTTTTTGTGGCTTGTTCCCTGTTGATGCCGACCA......................................................................................GTTTAGTGAGCTACGTGATGCGTTGGAGAAATTGCAACTTAATGATGCTGCATTGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGCCAGAGACTTCAAGTGCTATGGGTTTTGGATTTCGATGTGGGTTTTTGGGTCTTCTTCACATGGAAATTGTTCAG.....................................................................................................GAAAGGCTCGAGCGCGAGTACAATTTGTCTCTAATAACTACAGCCCCAAGTGTTGTTTACAGAGTCCATTGCATAGATGGTGATACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGTGTTCAAATCCATCTTTGCTTCCTGAACCTGGAAAAAGACGGTCAATTGAAGAGCCATTTGTTAAG................................................................................................ATTGAGCTGCTCACACCAAAAGAATATATAGGTGCTCTTATGGAACTGGCTCAAGATCGACGAGGAATATTCAAAGAGATGAAATATATTACCGAGAATAGAGCATCTATCATATATGAATTGCCTCTTGCTGAG......................................................................................................................................................................................................................................................................................................................................ATGGTTGGAGATTTCTTTGATCAGCTAAAGTCAAAGAGCAAAGGTTATGCAAGCATGGAATACAACTTCATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACAGAAAGTGATTTGATAAAGCTTGATATTCTCATAAATGGTGATCGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548428" ref_strand="+" ref_description="SGN-E548428 [TUS-61-B19]">
      <seq>aaagcaaacgcggcgacggagctcagtccgtacgacggcggcggcaacggtggcgtagtagcttgcgtgtggattgccaagcagctgcgactgacctcgaagccacagctcgcgccgggaaagaccgtctgttgaaggtaccaatatcaaatataaggaatttctcaataatagcacatattgatcacgggaaatcaacgttggcagataagttgctgcaaatgacgggaaccgtagagagccgagacatgaaggaacagtttctagataatatggatttggagagagaaagaggcatcactatcaaattgcaggctgctcgaatgcgtttcatttatgaaaatgagccatattgccttaatctgattgacactccaggtcatgtagatttctcgtatgaggtctctcggtctcttgctgcatgtgaaggtgcactacttgtagttgatgcgtcccagggagtagaggcgcaaaccctggctaatgtgtatttagcattggaaaacaatcttgagatcatcccggttttgaacaagattgatcttccaggtgctgatccagctcgtgtttgtcaagagatagaagagattgttggcctggattgtagncatgccatatacacctcagcaaaggaaggaataggtattagtgaaattctaaacgcgattgttcagaggattccacctcacgtgcaactgccgaaaaggctctgagggctcttatatttgacaggtactatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="76650" stop="70530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76350" g_stop="76214" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="75271" i_length="943">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75270" g_stop="75094" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="314" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75093" i_stop="74014" i_length="1080">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74013" g_stop="73927" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="401" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73926" i_stop="72703" i_length="1224">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72702" g_stop="72646" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="458" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72645" i_stop="72472" i_length="174">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72471" g_stop="72406" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="524" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72405" i_stop="71573" i_length="833">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71572" g_stop="71510" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="587" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71509" i_stop="71137" i_length="373">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71136" g_stop="71092" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="632" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71091" i_stop="70937" i_length="155">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70936" g_stop="70836" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="732" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="70835" i_stop="70547" i_length="289">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="70546" g_stop="70536" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="743" r_length="11" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E548428" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76350" e_stop="76214"/>
          <exon e_start="75270" e_stop="75094"/>
          <exon e_start="74013" e_stop="73927"/>
          <exon e_start="72702" e_stop="72646"/>
          <exon e_start="72471" e_stop="72406"/>
          <exon e_start="71572" e_stop="71510"/>
          <exon e_start="71136" e_stop="71092"/>
          <exon e_start="70936" e_stop="70836"/>
          <exon e_start="70546" e_stop="70536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAAACGCGGCGACGGAGCTCAGTCCGTACGACGGCGGCGGCAACGGTGGCGTAGTAGCTTGCGTGTGGATTGCCAAGCAGCTGCGACTGACCTCGAAGCCACAGCTCGCGCCGGGAAAGACCGTCTGTTGAAGGTCTCATTTTCGTATTTTTTTGTTTTTGAGTTTGATAAGTTATATGCACTGAAGTTTAAGTATTTACATAATCAGCTCATTTATTAGGTAATTTGTTAGTTAATTTTTTCGATAAACGATTAACTGATTACAATAACAACAACAACAACATAACCACTGAAATTCTGTAGGTGGAGTTTTGAGGATTGTAGAGTGTATGCGCAGACCTTACCTTACCTTTTGGAGAGACTGTCAGCTCAAGTAAAACACATGTCAAAGCAGATTTAGAAGGAGAAAATAGATTGATTATCTAATAAAAATAGTAACTAACCTTTTGATGATATCTAAACACTTAAATATTTACAAAATTTGCTCACTTAATAGAAAATTATAGGAAAATTTCTTGATAAACATTAATAGATTGTTTGATAAAATTGCTTCTAGCACCCAACCGTGTGGCTTAGTGGTAAATATAGTAGGTTGAGATTTGAGAACCATGAGATGGTCTCGGGTTCAAATTCTAGTAGGGACAAAATATTAGGTGATTTATCCTCATCTGTCCTAGACTTGGTGCACAGAGAAACTTGTACATGTTGTTGTTGGGAGGTGATAAATATCCCGTCGAATTAGTCGAGGTGAGCGCAAGCTGGCCTGTACACCAGGGTTATAAACAAATAAGAAGAAAAACAGCAACTAACTTGCTATCAAATGTTAAAAAAGTGTAAAAAGGACATGTATAAGAAGTACTTTGCTCGATCAGCTCACTTATTGCGTAACTATATTTAGTATAGATAAATCTCTTGATGAACTGATAGATTATTTGTTAAAAATGGTAACTAATCAGCTATTATAGGTTAAATTTTATTGATTATGTTAACACGAGTCTATATAATTTAAGTCCATTGTTTTGTGATATTTCATTTGGTAAGATGAATTGGCATTTGCTATATTTGTATGTATGTAGGTACCAATATCAAATATAAGGAATTTCTCAATAATAGCACATATTGATCACGGGAAATCAACGTTGGCAGATAAGTTGCTGCAAATGACGGGAACCGTAGAGAGCCGAGACATGAAGGAACAGTTTCTAGATAATATGGATTTGGAGAGAGAAAGAGGCATCACTATCAAATTGCAGGTGCATTGTAATTATTAACCCAGAACCCCAACAAGGAAAAACATATTTTACTTGGTTTCAATGTGAGTTTTGAGTAAGATATCTGGTATAGTTAATAGTTTGTTTGATTCCAACAGCATTTATGAAGATAGCAACAAGACACACTTCAGACTTCTAATTTATGTTGAGTGATAATGTATATAGTACTACTACTAGAACGTAGAAACTGATACTTGTTGACAGTAAAATGCAAGCTGTAGTGTTTCATTGCTATTTACGGGATTTCAGTGTGATATTATAATTCTTTCCTTTGATGAGCAATCGTCTCATCTATGGGGGCTTCTAGGATAAGAGCAAGTTGTTATTTTTAGAACCTTCCTCTTTTAAATATCGTGCAAATTATAAAAGAATGAACTATTTCTCTATTTTTAAGTTTCCTATAATGGAAAGACCACTTGTTTTAACGAAGTTTCTGGCATATTGCATGAAGGCAACCTTATATTCCCATTTCCCTCCAATACTCTTATGTGTAATAGTAGGCTTAGCAGAATGCTAGAAAAGGTAGAAGGAGTGGGGTCTGAGCAACATAGAATGCCATAAATAATTAGCTATGAAGGAATAGTCATAAGTGTGGGAACAATAGTGAGAGATACATAGGAGTTCTCCATAACCATGAACTTACACGAGGGATCTACATTAAGCGCATGCTTGTTTGACTAGTTATGGATGAGCAATATACATGATAAAGTTCCATGCTATTTGCTGTTTGAGGCGATATTGTGTTAGTTGACGAAAGTACAAAGAGTTGCAACAAAAAATTTGAGTTATATGTTCTTAAAACCTTTTCTTTGTCTCAGTATTGATCATTCTATTTGCAATCTGTGTTTCTTTGCCTCATTTGCCTTATCTTGTTATTTTTCTGTCACTTATTCTTTACATCCTGTTTCATTTACATTTTTTTGATCCGACGGTCTATCGGAAACAACCTCTCTACCCCACAAAGGTAGTGGTAAGGTTTGCGTACGTCTTACCCTCTCCAGACTCTATTTGTGGATATGTTGTAATGCAAACAAAGTAAATTCATGTAGCTTTTTGTTGCAGGCTGCTCGAATGCGTTTCATTTATGAAAATGAGCCATATTGCCTTAATCTGATTGACACTCCAGGTCATGTAGATTTCTCGTATGAGGTATGTGGCAGAAATGGTTTAACATGAAAGTGTTGTGCTAATTCTCAATTTTACAGTATACCAACCATCCTAATCTTATAAGGTATACACTCTCTATGCATATGGTTTTTGTTTCATGTTTCATATTCATAGGTGGGTTACTGAGCAAGATGTTAATTTTGTTAAAACAACAACGAATTTGTAGTATAACAATATAACTGATAAAATTTCCTAAATATATGAAGTGATTGCATCATCATCTTAAATTGAAGACGTCATATACCAAAGCTGAACCTGGTCGTAACTTAAGCAATCTCATTTCTTATCTAATTAGAATCTTACAACATCGTTTGGTTTGTGTGGTGAATAGCTCATCAAGGACTCAAATTTTAAGTTGCTTTTACCATGACATATATGCCACTTATTTGTGGTTATTGTTAATTTGGCCCGTTCGAAATGATTCAACCAAAGCAAAAAAGATTGAGAAGTTAAGCCTAATAATGTATAACTTTTGTTGATCTTGAAGGAGGTTGGAGACCAACAATTTTACTTTAGCATTTATCTAATACTTCCGCTGGTCTAATTTATGTGGTATATTTTCCTTTTCACCTGTCCCAAAAAGAATGTCATACTTCTTTTTTTTAAAAAATAATTTTGAGTTTTTTCGTTTACCCTTAATGAGATGATTTATAGCCGTACAAGTGTCTGTCTTGTTTTAGACCACAAGTTTCAAAAGTCTCTTTCTTTCTTAAACTTGATGCCTAGTCAAAAACCTCCACATAAATTGGGAAGGAGGGAATATAGATACCATGTTAGGCATTCCCATCCATGGTTCATTTAGATCTATATATTTCTGATCTTTTTGTTAAACTTCTTTTTAGACTTGGTTGTTGGGGGATAATCAAGTGGGATCAGTTCCAAATATATGTGGGGACCCAACTATAAAATACCCTACTCCTTGGCGATTCTTATATATTTGGCTTTGGAAATGTTGACATGACCAGCTGACCATTAAAATGTAGATAATTCATTTTCACTTAAAACTTGATCTGTCTTCCAGTGACTAACCAACTTTCATCAAGCTTAGTGAAATCACCCAATATGCTATAAATTAGCAGACCAAATCCACCAAAATGCATAATGCATTTGTAGTGTGCCCCAAAGGTGGTTGATTTGTGAATTATCTCTTGTGAAGCACAAATCAGATTTCCATTTGATGCCATATTAATTCTTCTTTAATATCAGGTCTCTCGGTCTCTTGCTGCATGTGAAGGTGCACTACTTGTAGTTGATGCGTCCCAGGTTTAAAATCACTTGCCTCCTCTATATTTTTGAATATAATCATACCATGCATATTCTATGTTGCAGTCTAATTAGTTGCTGTAGTTAAAGTATATGAACTGCTCTATTTCATTTTATTCAGTAAATTGAGTTCTTTAAAGTGACCAATTCTTAAGTTGAGTTCTTATGTTTTAGGGAGTAGAGGCGCAAACCCTGGCTAATGTGTATTTAGCATTGGAAAACAATCTTGAGATCATCCCGGTAAGTTGGTGGAATGCTAATGTGTATCATTGGTATATCGTGACTTACATTCCAAGCACATAACTATTTCAGATGTTTCAATTATGGCAAATGTCAGCCGATTTATGGTGTTACAATATTTATTTATTATTGATGGTTTCTAGCAATTCATGATTAATAGTTTTAAATTGGCTAAGTTTGTTTTTCCAAAACTATTGAAAGTCAACAGCTTTGATTTAGTTATATATTTAAATGTGTCTGCAATCACTGCTTGTTTAAATTGATTGAACTTGAGTAGAGAATCTTATGAAGATCATTGCGTAGGGTATACAGTATTTTAAAATATACTGTATCCAATTGTAGGAATTAAATTACTTACCTTATTGTATGTATACTAAACCGTCTTATATAAGAAGCCCCTCTTGTATACCATCAACAACCAAAACTTTTTAAGAGTTCTTTCTCTTTTCTTTACTCTCCTTTTAATGTCATCTGAGCTTTTATTTAGTAAATACCTAGGTATCTTCAATTTAAGGGTTCCCAAAGGGTGTTTGGGAATGCTACACTTTCTGTGCAAGGGCCTCACAAGAGGTTTATAGTGTCCTTGGACACTCAATCCATTGCATTGAGGTTTTGGGTTGGATGCACAAATTACTTCAAAGCTACGATTCACTAGTTTGTTAATTTACTAAATGTGCTCTACATCATGGTAGAGATGCAGGAGCATCTTTGCTCTCGTTATTTCTTATCCATCATGAAGCCCAGTTCTTTTGTCATTGTTATCTTCAAATCATGTCGTTTCTTACTTATTTAGTTATTTGTTTATTTACAAGAATGATGATTCTTCTCCTCAGGTTTTGAACAAGATTGATCTTCCAGGTGCTGATCCAGCTCGTGTTTGTCAAGAGATAGAAGAGGTTGGTTTGTTGATATAAATACAGTTCAGAACTTTGTGTCTGTTACTATAGTTATAGATACTATTTGTGGTACCATTATAAGTCTGCACCACTAAATCACTATGCAATTGCTAAGATTCCTGCTACCCCTCTGGTTGTCATTCTCAACATTACTGATGCTGTTGTGACTAGTACTACTTGCTCTATATTATTTTGCAATTTTTCTCTAAGGTTAGATGACCACTATAATGCCTTAATTGATAATTTATGTTTTTCCATGCTCTGCTGTCAATGGTTTGCCGTATAGCTGTCAGGATATGATTGAAGGAAAAAGATACTTGACGCTTCTGTAACTTCACAATTAACCATAGAATCAACTCATCTTGTTGTATAGATTGTTGGCCTGGATTGTAGCAATGCCATATACACCTCAGCAAAGGTAATTCTTTGATAACACTCATTTCCCGTTCTTTCTGTTCAAAGAATACATGGCAGATTCTACGTTTGATCAAAGAGAAGAAAAGGTGAAGTAGTGGTTGAATAAGTAGCCTTGCTACAACTTGCGGGATTTGATATGTGTTTTCTGCTCATTAGGAAGGAATAGGTATTAGTGAAATTCTAAACGCGATTGTTCAGAGGATTCCACCTCCACGTGCAACTGCCGAAAGGCCTCTGAGGGCTCTTATATTTGACAGGTATATCTGATTGATAGCCCTTTGAATATATTAGCGTTATTTCACTACCATATTCAGATATTTGAAAGATTATGCATGGAAATACTCATAGATTTTGAATCTTGCAGTTGCAATACCCAATGTTAAATACTGGTATTAATCTCAATATGATTGATGTTATCTACTACTTACTTTGGAAGATGTTACCATATTTGCAAACAAAATACTAACGTTGTGAATTTTATCCAAAGCTGCTAGCATGTACTTGGAATAACACATCATAACTAACTGAATTTGTTTCCCTTTGCAGTTACTATGATC</genome_strand>
        <mrna_strand>AAAGCAAACGCGGCGACGGAGCTCAGTCCGTACGACGGCGGCGGCAACGGTGGCGTAGTAGCTTGCGTGTGGATTGCCAAGCAGCTGCGACTGACCTCGAAGCCACAGCTCGCGCCGGGAAAGACCGTCTGTTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAATATCAAATATAAGGAATTTCTCAATAATAGCACATATTGATCACGGGAAATCAACGTTGGCAGATAAGTTGCTGCAAATGACGGGAACCGTAGAGAGCCGAGACATGAAGGAACAGTTTCTAGATAATATGGATTTGGAGAGAGAAAGAGGCATCACTATCAAATTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCGAATGCGTTTCATTTATGAAAATGAGCCATATTGCCTTAATCTGATTGACACTCCAGGTCATGTAGATTTCTCGTATGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTCGGTCTCTTGCTGCATGTGAAGGTGCACTACTTGTAGTTGATGCGTCCCAG..............................................................................................................................................................................GGAGTAGAGGCGCAAACCCTGGCTAATGTGTATTTAGCATTGGAAAACAATCTTGAGATCATCCCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAACAAGATTGATCTTCCAGGTGCTGATCCAGCTCGTGTTTGTCAAGAGATAGAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................ATTGTTGGCCTGGATTGTAGNCATGCCATATACACCTCAGCAAAG...........................................................................................................................................................GAAGGAATAGGTATTAGTGAAATTCTAAACGCGATTGTTCAGAGGATTCCACCT-CACGTGCAACTGCCGAAAAGGCTCTGAGGGCTCTTATATTTGACAG.................................................................................................................................................................................................................................................................................................GTACTATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291589" ref_strand="+" ref_description="SGN-E291589 [cLET-6-F5]">
      <seq>aagcaaacgcggcgacggagctcattccgtacgacggaggcggcaacggaggcgtagtagcttgcgtgtggattgccaagcagctgcgactgacctcgaagccacagctcgcgccgggaaagaccgtctgttgaaggtaccaatatcaaatataaggaatttctcaataatagcacatattgatcacgggaaatcaacgttggcagataagttgctgcaaatgacgggaaccgtagagagccgagacatgaaggaacagtttctagataatatggatttggagagagaaagaggcatcactatcaaattgcaggctgctcgaatgcgtttcatttatgaaaatgagccatattgccttaatctgattgacactccaggtcatgtagatttctcgtatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="76649" stop="73628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76349" g_stop="76214" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="75271" i_length="943">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75270" g_stop="75094" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="313" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75093" i_stop="74014" i_length="1080">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74013" g_stop="73928" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="399" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E291589" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76349" e_stop="76214"/>
          <exon e_start="75270" e_stop="75094"/>
          <exon e_start="74013" e_stop="73928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAACGCGGCGACGGAGCTCAGTCCGTACGACGGCGGCGGCAACGGTGGCGTAGTAGCTTGCGTGTGGATTGCCAAGCAGCTGCGACTGACCTCGAAGCCACAGCTCGCGCCGGGAAAGACCGTCTGTTGAAGGTCTCATTTTCGTATTTTTTTGTTTTTGAGTTTGATAAGTTATATGCACTGAAGTTTAAGTATTTACATAATCAGCTCATTTATTAGGTAATTTGTTAGTTAATTTTTTCGATAAACGATTAACTGATTACAATAACAACAACAACAACATAACCACTGAAATTCTGTAGGTGGAGTTTTGAGGATTGTAGAGTGTATGCGCAGACCTTACCTTACCTTTTGGAGAGACTGTCAGCTCAAGTAAAACACATGTCAAAGCAGATTTAGAAGGAGAAAATAGATTGATTATCTAATAAAAATAGTAACTAACCTTTTGATGATATCTAAACACTTAAATATTTACAAAATTTGCTCACTTAATAGAAAATTATAGGAAAATTTCTTGATAAACATTAATAGATTGTTTGATAAAATTGCTTCTAGCACCCAACCGTGTGGCTTAGTGGTAAATATAGTAGGTTGAGATTTGAGAACCATGAGATGGTCTCGGGTTCAAATTCTAGTAGGGACAAAATATTAGGTGATTTATCCTCATCTGTCCTAGACTTGGTGCACAGAGAAACTTGTACATGTTGTTGTTGGGAGGTGATAAATATCCCGTCGAATTAGTCGAGGTGAGCGCAAGCTGGCCTGTACACCAGGGTTATAAACAAATAAGAAGAAAAACAGCAACTAACTTGCTATCAAATGTTAAAAAAGTGTAAAAAGGACATGTATAAGAAGTACTTTGCTCGATCAGCTCACTTATTGCGTAACTATATTTAGTATAGATAAATCTCTTGATGAACTGATAGATTATTTGTTAAAAATGGTAACTAATCAGCTATTATAGGTTAAATTTTATTGATTATGTTAACACGAGTCTATATAATTTAAGTCCATTGTTTTGTGATATTTCATTTGGTAAGATGAATTGGCATTTGCTATATTTGTATGTATGTAGGTACCAATATCAAATATAAGGAATTTCTCAATAATAGCACATATTGATCACGGGAAATCAACGTTGGCAGATAAGTTGCTGCAAATGACGGGAACCGTAGAGAGCCGAGACATGAAGGAACAGTTTCTAGATAATATGGATTTGGAGAGAGAAAGAGGCATCACTATCAAATTGCAGGTGCATTGTAATTATTAACCCAGAACCCCAACAAGGAAAAACATATTTTACTTGGTTTCAATGTGAGTTTTGAGTAAGATATCTGGTATAGTTAATAGTTTGTTTGATTCCAACAGCATTTATGAAGATAGCAACAAGACACACTTCAGACTTCTAATTTATGTTGAGTGATAATGTATATAGTACTACTACTAGAACGTAGAAACTGATACTTGTTGACAGTAAAATGCAAGCTGTAGTGTTTCATTGCTATTTACGGGATTTCAGTGTGATATTATAATTCTTTCCTTTGATGAGCAATCGTCTCATCTATGGGGGCTTCTAGGATAAGAGCAAGTTGTTATTTTTAGAACCTTCCTCTTTTAAATATCGTGCAAATTATAAAAGAATGAACTATTTCTCTATTTTTAAGTTTCCTATAATGGAAAGACCACTTGTTTTAACGAAGTTTCTGGCATATTGCATGAAGGCAACCTTATATTCCCATTTCCCTCCAATACTCTTATGTGTAATAGTAGGCTTAGCAGAATGCTAGAAAAGGTAGAAGGAGTGGGGTCTGAGCAACATAGAATGCCATAAATAATTAGCTATGAAGGAATAGTCATAAGTGTGGGAACAATAGTGAGAGATACATAGGAGTTCTCCATAACCATGAACTTACACGAGGGATCTACATTAAGCGCATGCTTGTTTGACTAGTTATGGATGAGCAATATACATGATAAAGTTCCATGCTATTTGCTGTTTGAGGCGATATTGTGTTAGTTGACGAAAGTACAAAGAGTTGCAACAAAAAATTTGAGTTATATGTTCTTAAAACCTTTTCTTTGTCTCAGTATTGATCATTCTATTTGCAATCTGTGTTTCTTTGCCTCATTTGCCTTATCTTGTTATTTTTCTGTCACTTATTCTTTACATCCTGTTTCATTTACATTTTTTTGATCCGACGGTCTATCGGAAACAACCTCTCTACCCCACAAAGGTAGTGGTAAGGTTTGCGTACGTCTTACCCTCTCCAGACTCTATTTGTGGATATGTTGTAATGCAAACAAAGTAAATTCATGTAGCTTTTTGTTGCAGGCTGCTCGAATGCGTTTCATTTATGAAAATGAGCCATATTGCCTTAATCTGATTGACACTCCAGGTCATGTAGATTTCTCGTATGA</genome_strand>
        <mrna_strand>AAGCAAACGCGGCGACGGAGCTCATTCCGTACGACGGAGGCGGCAACGGAGGCGTAGTAGCTTGCGTGTGGATTGCCAAGCAGCTGCGACTGACCTCGAAGCCACAGCTCGCGCCGGGAAAGACCGTCTGTTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAATATCAAATATAAGGAATTTCTCAATAATAGCACATATTGATCACGGGAAATCAACGTTGGCAGATAAGTTGCTGCAAATGACGGGAACCGTAGAGAGCCGAGACATGAAGGAACAGTTTCTAGATAATATGGATTTGGAGAGAGAAAGAGGCATCACTATCAAATTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCGAATGCGTTTCATTTATGAAAATGAGCCATATTGCCTTAATCTGATTGACACTCCAGGTCATGTAGATTTCTCGTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356827" ref_strand="+" ref_description="SGN-E356827 [cTOS-22-A23]">
      <seq>cttcttctatcacgcacgtcattgcgttttttcaaactatttcaaaaatttcaaggtaccacctaaaactcatctcacataatcaatttttgttcatttttttgaatttcttaaaactactttttcacttcacttgttaattccttcagaattttggttcaatcaatggatgtccaatctccatcgaaaagattcacaagaggtatacaataacatgtagaaattgatgttgaacacccatcatttttattgggtctaactcaggaatttggggagatttcaggttcattgtctaaatctactgccgtgcaagagattagatccaaattcaataatgacccaggtagatttgttgatgaaggtgtgaagaatcctgtcgatgttattactgggtcaagtaagaaaaggaaacataaagctgatgtttataccgttcataatgataacaatgaagttgttggttctgggtctatcaagcatcataaggaatctgtataatcattgttcatgtatatgtttagattttatattatatgttttgtttttgtgttgactcatgtcttatacaattgtaattgtataaatgtataacctatattagaatatgtttttgtgtttctgttgattcatgccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="78898" stop="77664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78598" g_stop="77964" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E356827" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78598" e_stop="77964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTATCACAAACGTCATTGCATTTTTTCAAACTATTTCAAAAATTTCAAGGTACTATCTAAAACTCATCTCACATTATCAATTT--GTTCATTTTTTTGAATTTCTTACAACTACCTTTTCACTTCACTTGTTAATTTCTTCAGAATTTTGGTTCAATCAATAGATGCCCAATCTCTATCGAAAAGATTCACAAGAGGTATACCATTGCATGTTGAAATTGATGTTGAACACCCATCATCTTCATTGGGTCTAACTCAGGAATTTGGGGAGATTTCAGGTTCATTGTCTAAATCTACTACCATTCAAAAGATTAAATCCAAATTCAATAATGATCCAAGTAGATATGTTGGTGGAGGTGTGAAGAATCCTGTCGATGTTGTTACTGGGTCAAGTAAGAAAAGGAAACATAAAGCTGATGTTTATACCATTCATTATGATAAAAATGAAGCTGTTGGTTCTGGATCAATCGAGCATCATAAGGTATTTGTATAATCATTGTTCACGTAAATGTTTAGATTTTATATTATGTGTTTTGTTTTTGTGTTGAATCATGTCTTATACAATTGTAATTGTATAAATGTATAATCTATATTAGCATATGTTTTTGTGTTTCTGTTGATTTATGCCTTAT</genome_strand>
        <mrna_strand>CTTCTTCTATCACGCACGTCATTGCGTTTTTTCAAACTATTTCAAAAATTTCAAGGTACCACCTAAAACTCATCTCACATAATCAATTTTTGTTCATTTTTTTGAATTTCTTAAAACTACTTTTTCACTTCACTTGTTAATTCCTTCAGAATTTTGGTTCAATCAATGGATGTCCAATCTCCATCGAAAAGATTCACAAGAGGTATACAATAACATGTAGAAATTGATGTTGAACACCCATCATTTTTATTGGGTCTAACTCAGGAATTTGGGGAGATTTCAGGTTCATTGTCTAAATCTACTGCCGTGCAAGAGATTAGATCCAAATTCAATAATGACCCAGGTAGATTTGTTGATGAAGGTGTGAAGAATCCTGTCGATGTTATTACTGGGTCAAGTAAGAAAAGGAAACATAAAGCTGATGTTTATACCGTTCATAATGATAACAATGAAGTTGTTGGTTCTGGGTCTATCAAGCATCATAAGGAATCTGTATAATCATTGTTCATGTATATGTTTAGATTTTATATTATATGTTTTGTTTTTGTGTTGACTCATGTCTTATACAATTGTAATTGTATAAATGTATAACCTATATTAGAATATGTTTTTGTGTTTCTGTTGATTCATGCCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378432" ref_strand="+" ref_description="SGN-E378432 [TUS-35-O16]">
      <seq>ttaaataaaccccctttcagttcttttctttaaaggacaaactctttgtaagtttgttatattagatcacacaattttgtataaaaaaaatcctccaaaacaaaatcctcttttcctctctttctgtgctttaaacacaatttcttcttcttccttcaatttctccacaattttctccataattgtaatttcaaactaccagcttcttctatcacacacatcattgcgttttttcatactatctcaaaaatttcaagaattttggttcaatcaatggatgtcaaatctccatcgaaaagattcacaagaggtataccattacatgttcagattgatgttgaacacccatcattttcatttggtctaactcaggaatttagggagatcttaggttcattgtctaaatctactaccattcagaagataaaatccaaattcaataatgacccaagtagatttgttaatggaggtgtgaagaatcttgtcgatgttgttactgggtcaagtaagaaaagaaaacataaagatgatgtttataccgttcataatgataaaaatgaagttgttggttctgggtcaatcgagcatcataaggtatttgtataatcattgttcatgtatatgtttagattttatattatatgttttgtttttgtgttgaatcatgtcttatacaattgtaattgtcaaaatgtataatctatattagtataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="79100" stop="77696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78800" g_stop="78544" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78543" i_stop="78452" i_length="92">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.968" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78451" g_stop="77997" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="712" r_length="455" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="725"/>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E378432" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78800" e_stop="78544"/>
          <exon e_start="78451" e_stop="77997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATAAACCCCCTTTCAGTTATTTTCTTTAAAGGACAAACTCTCCGTAAGTTTGCTATACCAGGTTCCACCATTTTGTATTAAAAAATTTCCCCAAAATAAAATTCTCTTTTATCCTTTTTCTGCACTTTTTATACAATTTCTTCTTCTTCCTTCAATTTCTCCACAGTTTTCTCCATAATTGTAATTTCAAACTACCAGCTTCTTCTATCACAAACGTCATTGCATTTTTTCAAACTATTTCAAAAATTTCAAGGTACTATCTAAAACTCATCTCACATTATCAATTTGTTCATTTTTTTGAATTTCTTACAACTACCTTTTCACTTCACTTGTTAATTTCTTCAGAATTTTGGTTCAATCAATAGATGCCCAATCTCTATCGAAAAGATTCACAAGAGGTATACCATTGCATGTTGAAATTGATGTTGAACACCCATCATCTTCATTGGGTCTAACTCAGGAATTTGGGGAGATTTCAGGTTCATTGTCTAAATCTACTACCATTCAAAAGATTAAATCCAAATTCAATAATGATCCAAGTAGATATGTTGGTGGAGGTGTGAAGAATCCTGTCGATGTTGTTACTGGGTCAAGTAAGAAAAGGAAACATAAAGCTGATGTTTATACCATTCATTATGATAAAAATGAAGCTGTTGGTTCTGGATCAATCGAGCATCATAAGGTATTTGTATAATCATTGTTCACGTAAATGTTTAGATTTTATATTATGTGTTTTGTTTTTGTGTTGAATCATGTCTTATACAATTGTAATTGTATAAATGTATAATCTATATTAGCAT</genome_strand>
        <mrna_strand>TTAAATAAACCCCCTTTCAGTTCTTTTCTTTAAAGGACAAACTCTTTGTAAGTTTGTTATATTAGATCACACAATTTTGTATAAAAAAAATCCTCCAAAACAAAATCCTCTTTTCCTCTCTTTCTGTGCTTTAAACACAATTTCTTCTTCTTCCTTCAATTTCTCCACAATTTTCTCCATAATTGTAATTTCAAACTACCAGCTTCTTCTATCACACACATCATTGCGTTTTTTCATACTATCTCAAAAATTTCAAG............................................................................................AATTTTGGTTCAATCAATGGATGTCAAATCTCCATCGAAAAGATTCACAAGAGGTATACCATTACATGTTCAGATTGATGTTGAACACCCATCATTTTCATTTGGTCTAACTCAGGAATTTAGGGAGATCTTAGGTTCATTGTCTAAATCTACTACCATTCAGAAGATAAAATCCAAATTCAATAATGACCCAAGTAGATTTGTTAATGGAGGTGTGAAGAATCTTGTCGATGTTGTTACTGGGTCAAGTAAGAAAAGAAAACATAAAGATGATGTTTATACCGTTCATAATGATAAAAATGAAGTTGTTGGTTCTGGGTCAATCGAGCATCATAAGGTATTTGTATAATCATTGTTCATGTATATGTTTAGATTTTATATTATATGTTTTGTTTTTGTGTTGAATCATGTCTTATACAATTGTAATTGTCAAAATGTATAATCTATATTAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392573" ref_strand="+" ref_description="SGN-E392573 [TUS-35-O16](-)">
      <seq>aaataaacccccctttcagttattttttttaaaggacaaacttctttgtaagtttgttatattagatcacacaattttgtataaaaaaaatcctccaaaacaaaatcctcttttcctctctttctgtgctttaaacacaatttcttcttcttccttcaatttctccacaattttctccataattgtaatttcaaactaccagcttcttctatcacacacatcattgcgttttttcatactatctcaaaaatttcaagaattttggttcaatcaatggatgtcaaatctccatcgaaaagattcacaagaggtataccattacatgttcagattgatgttgaacacccatcattttcatttggtctaactcaggaatttagggagatcttaggttcattgtctaaatctactaccattcagaagataaaatccaaattcaataatgacccaagtagatttgttaatggaggtgtgaagaatcttgtcgatgttgttactgggtcaagtaagaaaagaaaacataaagatgatgtttataccgttcataatgataaaaatgaagttgttggttctgggtcaatcgagcatcataaggtatttgtataatcattgttcatgtatatgtttagattttatattatatgttttgtttttgtgttgaatcatgtcttatacaattgtaattgtcaaaatgtataatctatattagtataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="79098" stop="77696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78798" g_stop="78544" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.863"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78543" i_stop="78452" i_length="92">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.968" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78451" g_stop="77997" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="712" r_length="455" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="725"/>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E392573" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78798" e_stop="78544"/>
          <exon e_start="78451" e_stop="77997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAA-CCCCCTTTCAGTTATTTTCTTTAAAGGACAAAC-TCTCCGTAAGTTTGCTATACCAGGTTCCACCATTTTGTATTAAAAAATTTCCCCAAAATAAAATTCTCTTTTATCCTTTTTCTGCACTTTTTATACAATTTCTTCTTCTTCCTTCAATTTCTCCACAGTTTTCTCCATAATTGTAATTTCAAACTACCAGCTTCTTCTATCACAAACGTCATTGCATTTTTTCAAACTATTTCAAAAATTTCAAGGTACTATCTAAAACTCATCTCACATTATCAATTTGTTCATTTTTTTGAATTTCTTACAACTACCTTTTCACTTCACTTGTTAATTTCTTCAGAATTTTGGTTCAATCAATAGATGCCCAATCTCTATCGAAAAGATTCACAAGAGGTATACCATTGCATGTTGAAATTGATGTTGAACACCCATCATCTTCATTGGGTCTAACTCAGGAATTTGGGGAGATTTCAGGTTCATTGTCTAAATCTACTACCATTCAAAAGATTAAATCCAAATTCAATAATGATCCAAGTAGATATGTTGGTGGAGGTGTGAAGAATCCTGTCGATGTTGTTACTGGGTCAAGTAAGAAAAGGAAACATAAAGCTGATGTTTATACCATTCATTATGATAAAAATGAAGCTGTTGGTTCTGGATCAATCGAGCATCATAAGGTATTTGTATAATCATTGTTCACGTAAATGTTTAGATTTTATATTATGTGTTTTGTTTTTGTGTTGAATCATGTCTTATACAATTGTAATTGTATAAATGTATAATCTATATTAGCAT</genome_strand>
        <mrna_strand>AAATAAACCCCCCTTTCAGTTATTTTTTTTAAAGGACAAACTTCTTTGTAAGTTTGTTATATTAGATCACACAATTTTGTATAAAAAAAATCCTCCAAAACAAAATCCTCTTTTCCTCTCTTTCTGTGCTTTAAACACAATTTCTTCTTCTTCCTTCAATTTCTCCACAATTTTCTCCATAATTGTAATTTCAAACTACCAGCTTCTTCTATCACACACATCATTGCGTTTTTTCATACTATCTCAAAAATTTCAAG............................................................................................AATTTTGGTTCAATCAATGGATGTCAAATCTCCATCGAAAAGATTCACAAGAGGTATACCATTACATGTTCAGATTGATGTTGAACACCCATCATTTTCATTTGGTCTAACTCAGGAATTTAGGGAGATCTTAGGTTCATTGTCTAAATCTACTACCATTCAGAAGATAAAATCCAAATTCAATAATGACCCAAGTAGATTTGTTAATGGAGGTGTGAAGAATCTTGTCGATGTTGTTACTGGGTCAAGTAAGAAAAGAAAACATAAAGATGATGTTTATACCGTTCATAATGATAAAAATGAAGTTGTTGGTTCTGGGTCAATCGAGCATCATAAGGTATTTGTATAATCATTGTTCATGTATATGTTTAGATTTTATATTATATGTTTTGTTTTTGTGTTGAATCATGTCTTATACAATTGTAATTGTCAAAATGTATAATCTATATTAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392566" ref_strand="+" ref_description="SGN-E392566 [TUS-35-M16](-)">
      <seq>tttttatatcacacacatcattgggttttttcataatatctcaaaaatttcaagaattttggttcaatcaatggatgtcaaatttccatcgaaaagattcacaagaggtataccattacatgttcagattgatgttgaacacccatcattttcatttggtctaactcaggaatttagggagatcttaggttcattgtctaaatctactaccattcagaagataaaatccaaattcaataatgacccaagtagatttgttaatggaggtgtgaagaatcttgtcgatgttgttactgggtcaagtaagaaaagaaaacataaagatgatgtttataccgttcataatgataaaaatgaagttgttggttctgggtcaatcgagcatcataaggtatttgtataatcattgttcatgtatatgtttagattttatattatatgttttgtttttgtgttgaatcatgtcttatacaattgtaattgtcaaaatgtataatctatattagtataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="78762" stop="77696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78597" g_stop="78544" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78543" i_stop="78452" i_length="92">
            <donor d_prob="0.999" d_score="0.84"/>
            <acceptor a_prob="0.968" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78451" g_stop="77997" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="509" r_length="455" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="510" polyA_stop="522"/>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E392566" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78597" e_stop="78544"/>
          <exon e_start="78451" e_stop="77997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTATCACAAACGTCATTGCATTTTTTCAAACTATTTCAAAAATTTCAAGGTACTATCTAAAACTCATCTCACATTATCAATTTGTTCATTTTTTTGAATTTCTTACAACTACCTTTTCACTTCACTTGTTAATTTCTTCAGAATTTTGGTTCAATCAATAGATGCCCAATCTCTATCGAAAAGATTCACAAGAGGTATACCATTGCATGTTGAAATTGATGTTGAACACCCATCATCTTCATTGGGTCTAACTCAGGAATTTGGGGAGATTTCAGGTTCATTGTCTAAATCTACTACCATTCAAAAGATTAAATCCAAATTCAATAATGATCCAAGTAGATATGTTGGTGGAGGTGTGAAGAATCCTGTCGATGTTGTTACTGGGTCAAGTAAGAAAAGGAAACATAAAGCTGATGTTTATACCATTCATTATGATAAAAATGAAGCTGTTGGTTCTGGATCAATCGAGCATCATAAGGTATTTGTATAATCATTGTTCACGTAAATGTTTAGATTTTATATTATGTGTTTTGTTTTTGTGTTGAATCATGTCTTATACAATTGTAATTGTATAAATGTATAATCTATATTAGCAT</genome_strand>
        <mrna_strand>TTTTTATATCACACACATCATTGGGTTTTTTCATAATATCTCAAAAATTTCAAG............................................................................................AATTTTGGTTCAATCAATGGATGTCAAATTTCCATCGAAAAGATTCACAAGAGGTATACCATTACATGTTCAGATTGATGTTGAACACCCATCATTTTCATTTGGTCTAACTCAGGAATTTAGGGAGATCTTAGGTTCATTGTCTAAATCTACTACCATTCAGAAGATAAAATCCAAATTCAATAATGACCCAAGTAGATTTGTTAATGGAGGTGTGAAGAATCTTGTCGATGTTGTTACTGGGTCAAGTAAGAAAAGAAAACATAAAGATGATGTTTATACCGTTCATAATGATAAAAATGAAGTTGTTGGTTCTGGGTCAATCGAGCATCATAAGGTATTTGTATAATCATTGTTCATGTATATGTTTAGATTTTATATTATATGTTTTGTTTTTGTGTTGAATCATGTCTTATACAATTGTAATTGTCAAAATGTATAATCTATATTAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392335" ref_strand="+" ref_description="SGN-E392335 [TUS-35-O16]">
      <seq>attaaataaaccccctttcagttattttctttaaaggacaaactctttgtaagtttgttatattagatcacacaattttgtataaaaaaaatcctccaaaacaaaatcctcttttcctctctttctgtgctttaaacacaatttcttcttcttccttcaatttctccacaattttctccataattgtaatttcaaactaccagcttcttctatcacacacatcattgcgttttttcatactatctcaaaaatttcaagaattttggttcaatcaatggatgtcaaatctccatcgaaaagattcacaagaggtataccattacatgttcagattgatgttgaacacccatcattttcatttggtctaactcaggaatttagggagatcttaggttcattgtctaaatctactaccattcagaagataaaatccaaattcaataatgacccaagtagatttgttaatggaggtgtgaagaatcttgtcgatgttgttactgggtcaagtaagaaaagaaaacataaagatgatgtttataccgttcataatgataaaaatgaagttgttggttctgggtcaatcgagcatcataaggtatttgtataatcattgttcatgtatatgtttagattttatattatatgtttttgttttttgtgttgaatcatgtcttatacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="79101" stop="77730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78801" g_stop="78544" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78543" i_stop="78452" i_length="92">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.968" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78451" g_stop="78030" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="682" r_length="424" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E392335" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78801" e_stop="78544"/>
          <exon e_start="78451" e_stop="78030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATAAACCCCCTTTCAGTTATTTTCTTTAAAGGACAAACTCTCCGTAAGTTTGCTATACCAGGTTCCACCATTTTGTATTAAAAAATTTCCCCAAAATAAAATTCTCTTTTATCCTTTTTCTGCACTTTTTATACAATTTCTTCTTCTTCCTTCAATTTCTCCACAGTTTTCTCCATAATTGTAATTTCAAACTACCAGCTTCTTCTATCACAAACGTCATTGCATTTTTTCAAACTATTTCAAAAATTTCAAGGTACTATCTAAAACTCATCTCACATTATCAATTTGTTCATTTTTTTGAATTTCTTACAACTACCTTTTCACTTCACTTGTTAATTTCTTCAGAATTTTGGTTCAATCAATAGATGCCCAATCTCTATCGAAAAGATTCACAAGAGGTATACCATTGCATGTTGAAATTGATGTTGAACACCCATCATCTTCATTGGGTCTAACTCAGGAATTTGGGGAGATTTCAGGTTCATTGTCTAAATCTACTACCATTCAAAAGATTAAATCCAAATTCAATAATGATCCAAGTAGATATGTTGGTGGAGGTGTGAAGAATCCTGTCGATGTTGTTACTGGGTCAAGTAAGAAAAGGAAACATAAAGCTGATGTTTATACCATTCATTATGATAAAAATGAAGCTGTTGGTTCTGGATCAATCGAGCATCATAAGGTATTTGTATAATCATTGTTCACGTAAATGTTTAGATTTTATATTATGTG-TTTTG-TTTTTGTGTTGAATCATGTCTTATACAATT</genome_strand>
        <mrna_strand>ATTAAATAAACCCCCTTTCAGTTATTTTCTTTAAAGGACAAACTCTTTGTAAGTTTGTTATATTAGATCACACAATTTTGTATAAAAAAAATCCTCCAAAACAAAATCCTCTTTTCCTCTCTTTCTGTGCTTTAAACACAATTTCTTCTTCTTCCTTCAATTTCTCCACAATTTTCTCCATAATTGTAATTTCAAACTACCAGCTTCTTCTATCACACACATCATTGCGTTTTTTCATACTATCTCAAAAATTTCAAG............................................................................................AATTTTGGTTCAATCAATGGATGTCAAATCTCCATCGAAAAGATTCACAAGAGGTATACCATTACATGTTCAGATTGATGTTGAACACCCATCATTTTCATTTGGTCTAACTCAGGAATTTAGGGAGATCTTAGGTTCATTGTCTAAATCTACTACCATTCAGAAGATAAAATCCAAATTCAATAATGACCCAAGTAGATTTGTTAATGGAGGTGTGAAGAATCTTGTCGATGTTGTTACTGGGTCAAGTAAGAAAAGAAAACATAAAGATGATGTTTATACCGTTCATAATGATAAAAATGAAGTTGTTGGTTCTGGGTCAATCGAGCATCATAAGGTATTTGTATAATCATTGTTCATGTATATGTTTAGATTTTATATTATATGTTTTTGTTTTTTGTGTTGAATCATGTCTTATACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397869" ref_strand="+" ref_description="SGN-E397869 [TUS-35-M16]">
      <seq>attaaataaaccccctttcagttattttctttaaaggacaaactctttgtaagtttgttatattagatcacacaattttgtataaaaaaaatcctccaaaacaaaatcctcttttcctctctttctgtgctttaaacacaatttcttcttcttccttcaatttctccacaattttctccataattgtaatttcaaactaccagcttcttctatcacacacatcattgcgttttttcatactatctcaaaaatttcaagaattttggttcaatcaatggatgtcaaatctccatcgaaaagattcacaagaggtataccattacatgttcagattgatgttgaacacccatcattttcatttggtctaactcaggaatttagggagatcttaggttcattgtctaaatctactaccattcagaagataaaatccaaattcaataatgacccaagtagatttgttaatggaggtgtgaagaatcttgtcgatgttgttactgggtcaagtaagaaaagaaaacataaagatgatgtttataccgttcataatgataaaaatgaagttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="79101" stop="77842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78801" g_stop="78544" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78543" i_stop="78452" i_length="92">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.968" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78451" g_stop="78142" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="568" r_length="310" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E397869" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78801" e_stop="78544"/>
          <exon e_start="78451" e_stop="78142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATAAACCCCCTTTCAGTTATTTTCTTTAAAGGACAAACTCTCCGTAAGTTTGCTATACCAGGTTCCACCATTTTGTATTAAAAAATTTCCCCAAAATAAAATTCTCTTTTATCCTTTTTCTGCACTTTTTATACAATTTCTTCTTCTTCCTTCAATTTCTCCACAGTTTTCTCCATAATTGTAATTTCAAACTACCAGCTTCTTCTATCACAAACGTCATTGCATTTTTTCAAACTATTTCAAAAATTTCAAGGTACTATCTAAAACTCATCTCACATTATCAATTTGTTCATTTTTTTGAATTTCTTACAACTACCTTTTCACTTCACTTGTTAATTTCTTCAGAATTTTGGTTCAATCAATAGATGCCCAATCTCTATCGAAAAGATTCACAAGAGGTATACCATTGCATGTTGAAATTGATGTTGAACACCCATCATCTTCATTGGGTCTAACTCAGGAATTTGGGGAGATTTCAGGTTCATTGTCTAAATCTACTACCATTCAAAAGATTAAATCCAAATTCAATAATGATCCAAGTAGATATGTTGGTGGAGGTGTGAAGAATCCTGTCGATGTTGTTACTGGGTCAAGTAAGAAAAGGAAACATAAAGCTGATGTTTATACCATTCATTATGATAAAAATGAAGCTGTT</genome_strand>
        <mrna_strand>ATTAAATAAACCCCCTTTCAGTTATTTTCTTTAAAGGACAAACTCTTTGTAAGTTTGTTATATTAGATCACACAATTTTGTATAAAAAAAATCCTCCAAAACAAAATCCTCTTTTCCTCTCTTTCTGTGCTTTAAACACAATTTCTTCTTCTTCCTTCAATTTCTCCACAATTTTCTCCATAATTGTAATTTCAAACTACCAGCTTCTTCTATCACACACATCATTGCGTTTTTTCATACTATCTCAAAAATTTCAAG............................................................................................AATTTTGGTTCAATCAATGGATGTCAAATCTCCATCGAAAAGATTCACAAGAGGTATACCATTACATGTTCAGATTGATGTTGAACACCCATCATTTTCATTTGGTCTAACTCAGGAATTTAGGGAGATCTTAGGTTCATTGTCTAAATCTACTACCATTCAGAAGATAAAATCCAAATTCAATAATGACCCAAGTAGATTTGTTAATGGAGGTGTGAAGAATCTTGTCGATGTTGTTACTGGGTCAAGTAAGAAAAGAAAACATAAAGATGATGTTTATACCGTTCATAATGATAAAAATGAAGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273907" ref_strand="+" ref_description="SGN-E273907 [cLEN-7-D23]">
      <seq>ttaaataaaccccctttcagttattttctttaaaggacaaactctttgtaagtttgttatattagatcacacaattttgtataaaaaaaatcctccaaaacaaaatcctcttttcctctctttctgtgctttaaacacaatttcttcttcttccttcaatttctccacaattttctccataattgtaatttcaaactaccagcttcttctatcacacacatcattgcgttttttcatactatctcaaaaatttcaagaattttggttcaatcaatggatgtcaaatctccatcgaaaagattcacaagaggtataccattacatgttcagattgatgttgaacacccatcattttcatttggtctaactcaggaatttagggagatcttaggttcattgtctaaatctactaccattcagaagataaaatccaaattcaataatgacccaagtagatttgttaatggaggtgtgaagaatcttgtcgatgttgttactgggtcaagttagaaaagaaaacataaagatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="79100" stop="77876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78800" g_stop="78544" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78543" i_stop="78452" i_length="92">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.968" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78451" g_stop="78176" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="533" r_length="276" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E273907" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78800" e_stop="78544"/>
          <exon e_start="78451" e_stop="78176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATAAACCCCCTTTCAGTTATTTTCTTTAAAGGACAAACTCTCCGTAAGTTTGCTATACCAGGTTCCACCATTTTGTATTAAAAAATTTCCCCAAAATAAAATTCTCTTTTATCCTTTTTCTGCACTTTTTATACAATTTCTTCTTCTTCCTTCAATTTCTCCACAGTTTTCTCCATAATTGTAATTTCAAACTACCAGCTTCTTCTATCACAAACGTCATTGCATTTTTTCAAACTATTTCAAAAATTTCAAGGTACTATCTAAAACTCATCTCACATTATCAATTTGTTCATTTTTTTGAATTTCTTACAACTACCTTTTCACTTCACTTGTTAATTTCTTCAGAATTTTGGTTCAATCAATAGATGCCCAATCTCTATCGAAAAGATTCACAAGAGGTATACCATTGCATGTTGAAATTGATGTTGAACACCCATCATCTTCATTGGGTCTAACTCAGGAATTTGGGGAGATTTCAGGTTCATTGTCTAAATCTACTACCATTCAAAAGATTAAATCCAAATTCAATAATGATCCAAGTAGATATGTTGGTGGAGGTGTGAAGAATCCTGTCGATGTTGTTACTGGGTCAAGTAAGAAAAGGAAACATAAAGCTGATGT</genome_strand>
        <mrna_strand>TTAAATAAACCCCCTTTCAGTTATTTTCTTTAAAGGACAAACTCTTTGTAAGTTTGTTATATTAGATCACACAATTTTGTATAAAAAAAATCCTCCAAAACAAAATCCTCTTTTCCTCTCTTTCTGTGCTTTAAACACAATTTCTTCTTCTTCCTTCAATTTCTCCACAATTTTCTCCATAATTGTAATTTCAAACTACCAGCTTCTTCTATCACACACATCATTGCGTTTTTTCATACTATCTCAAAAATTTCAAG............................................................................................AATTTTGGTTCAATCAATGGATGTCAAATCTCCATCGAAAAGATTCACAAGAGGTATACCATTACATGTTCAGATTGATGTTGAACACCCATCATTTTCATTTGGTCTAACTCAGGAATTTAGGGAGATCTTAGGTTCATTGTCTAAATCTACTACCATTCAGAAGATAAAATCCAAATTCAATAATGACCCAAGTAGATTTGTTAATGGAGGTGTGAAGAATCTTGTCGATGTTGTTACTGGGTCAAGTTAGAAAAGAAAACATAAAGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274149" ref_strand="+" ref_description="SGN-E274149 [cLEN-8-I14]">
      <seq>ttaaataaaccccctttcagttattttctttaaaggacaaactctttgtaagtttgttatattagatcacacaattttgtataaaaaaaatcctccaaaacaaaatcctcttttcctctctttctgtgctttaaacacaatttcttcttcttccttcaatttctccacaattttctccataattgtaatttcaaactaccagcttcttctatcacacacatcattgcgttttttcatactatctcaaaaatttcaagaattttggttcaatcaatggatgtcaaatctccatcgaaaagattcacaagaggtataccattacatgttcagattgatgttgaacacccatcattttcatttggtctaactcaggaatttagggagatcttaggttcattgtctaaatctactaccattcagaagataaaatccaaattcaataatgacccaagtagatttgttaatggaggtgtgaagaatcttgtcgatgttgttactgggtcaagtaagaaaagaaaacataaagatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="79100" stop="77877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78800" g_stop="78544" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78543" i_stop="78452" i_length="92">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.968" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78451" g_stop="78177" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="532" r_length="275" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E274149" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78800" e_stop="78544"/>
          <exon e_start="78451" e_stop="78177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATAAACCCCCTTTCAGTTATTTTCTTTAAAGGACAAACTCTCCGTAAGTTTGCTATACCAGGTTCCACCATTTTGTATTAAAAAATTTCCCCAAAATAAAATTCTCTTTTATCCTTTTTCTGCACTTTTTATACAATTTCTTCTTCTTCCTTCAATTTCTCCACAGTTTTCTCCATAATTGTAATTTCAAACTACCAGCTTCTTCTATCACAAACGTCATTGCATTTTTTCAAACTATTTCAAAAATTTCAAGGTACTATCTAAAACTCATCTCACATTATCAATTTGTTCATTTTTTTGAATTTCTTACAACTACCTTTTCACTTCACTTGTTAATTTCTTCAGAATTTTGGTTCAATCAATAGATGCCCAATCTCTATCGAAAAGATTCACAAGAGGTATACCATTGCATGTTGAAATTGATGTTGAACACCCATCATCTTCATTGGGTCTAACTCAGGAATTTGGGGAGATTTCAGGTTCATTGTCTAAATCTACTACCATTCAAAAGATTAAATCCAAATTCAATAATGATCCAAGTAGATATGTTGGTGGAGGTGTGAAGAATCCTGTCGATGTTGTTACTGGGTCAAGTAAGAAAAGGAAACATAAAGCTGATG</genome_strand>
        <mrna_strand>TTAAATAAACCCCCTTTCAGTTATTTTCTTTAAAGGACAAACTCTTTGTAAGTTTGTTATATTAGATCACACAATTTTGTATAAAAAAAATCCTCCAAAACAAAATCCTCTTTTCCTCTCTTTCTGTGCTTTAAACACAATTTCTTCTTCTTCCTTCAATTTCTCCACAATTTTCTCCATAATTGTAATTTCAAACTACCAGCTTCTTCTATCACACACATCATTGCGTTTTTTCATACTATCTCAAAAATTTCAAG............................................................................................AATTTTGGTTCAATCAATGGATGTCAAATCTCCATCGAAAAGATTCACAAGAGGTATACCATTACATGTTCAGATTGATGTTGAACACCCATCATTTTCATTTGGTCTAACTCAGGAATTTAGGGAGATCTTAGGTTCATTGTCTAAATCTACTACCATTCAGAAGATAAAATCCAAATTCAATAATGACCCAAGTAGATTTGTTAATGGAGGTGTGAAGAATCTTGTCGATGTTGTTACTGGGTCAAGTAAGAAAAGAAAACATAAAGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356160" ref_strand="+" ref_description="SGN-E356160 [cTOS-20-A10]">
      <seq>agatttcgggattttataagtagaatctttaaagtagacgaagggtaaggagcatgggaagagtatgtagataagcatatggagacgggcaagtgagatacaagatgagactggaattagttgaatcggttaacgcccttgtttactgattatatgttgactggtttttgtgaagatcttggccattggtaaagtgtgaatgaatggtctgatgaagttgttgatgcccaattttattttatcccctttccctcccttgctatatatgtcaaggatgatcaagctaggtaaagttatgtatatcattttttatttttttttctctctttcacccatcctttggtcactctctagttgagttgagtgaacatgaagattttgatcaaatgtacagtaaaggaaatcttttttgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="90439" stop="89425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90139" g_stop="89725" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E356160" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90139" e_stop="89725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTCGGGATTTTATAAGTAGAATCTTTAAAGTAGACGAAGGGTAAGGAGCATGGGAAGAGTATGTAGATAAGCATATGGAGACGGGCAAGTGAGATACAAGATGAGACTGGAATTAGTTGAATCGGTTAACGCCCTTGTTTACTGATTATATGTTGACTGGTTTTTGTGAAGATCTTGGCCATTGGTAAAGTGTGAATGAATGGTCTGATGAAGTTGTTGATGCCCAATTTTATTTTATCCCCTTTCCCTCCCTTGCTATATATGTCAAGGATGATCAAGCTAGGTAAAGTTATGTATATCATTTTTTATTTTTTTTTCTCTCTTTCACCCATCCTTTGGTCACTCTCTAGTTGAGTTGAGTGAACATGAAGATTTTGATCAAATGTACAGTAAAGGAAATCTTTTTTGTTA</genome_strand>
        <mrna_strand>AGATTTCGGGATTTTATAAGTAGAATCTTTAAAGTAGACGAAGGGTAAGGAGCATGGGAAGAGTATGTAGATAAGCATATGGAGACGGGCAAGTGAGATACAAGATGAGACTGGAATTAGTTGAATCGGTTAACGCCCTTGTTTACTGATTATATGTTGACTGGTTTTTGTGAAGATCTTGGCCATTGGTAAAGTGTGAATGAATGGTCTGATGAAGTTGTTGATGCCCAATTTTATTTTATCCCCTTTCCCTCCCTTGCTATATATGTCAAGGATGATCAAGCTAGGTAAAGTTATGTATATCATTTTTTATTTTTTTTTCTCTCTTTCACCCATCCTTTGGTCACTCTCTAGTTGAGTTGAGTGAACATGAAGATTTTGATCAAATGTACAGTAAAGGAAATCTTTTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344280" ref_strand="+" ref_description="SGN-E344280 [cTOF-16-O1]">
      <seq>ggaatgttaatttaccgaggatttgcatatgggaatctgatggtgaagcaggagatattacttgtgacattgttgacaatagggaggcttcttctatgtttgttcctaggaatgatgatgacgaggacgaggatgatgatgatgatgaagagagtgagagttccgaaggagatgaaagtggggattttcgaaagagtccttgccactctgaagttgtggaaatgaagaagccggggcaactaataaccaagggacataagaattatgatttggtgcttagtcttcagctaggtattaggtattctactcagaagcacgcctcaattacccgagaaccaaagaatggggattttgatcctaatgagaagttctggacaaggtttccacctgagggttccaaatccacaccaccccatcaggttgtggacttcaaatggaaggactactgtcccgtggttttcaagaatcttagggagttatttggaatcgatccagctgaatacatgctggctatctgtggaagtgatgcacttagggaactgtctttcccctggaaaagtggcagcaacttctatctaactcaagatgaccgatttatcatcaaaactttgaaaaagtccgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="-" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="93548" stop="92050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93248" g_stop="92951" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92950" i_stop="92847" i_length="104">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92846" g_stop="92682" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="463" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92681" i_stop="92512" i_length="170">
            <donor d_prob="0.611" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92511" g_stop="92350" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="625" r_length="162" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="-" ref_id="SGN-E344280" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93248" e_stop="92951"/>
          <exon e_start="92846" e_stop="92682"/>
          <exon e_start="92511" e_stop="92350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGTTAATTTACCGAGGATTTGCATATGGGAATCTGATGGTGAAGCAGGAGATATTACTTGTGACATTGTTGACAATAGGGAGGCTTCTTCTATGTTTGTTCCTAGGAATGATGATGACGAGGACGAGGATGATGATGATGATGAAGAGAGTGAGAGTTCCGAAGGAGATGAAAGTGGGGATTTTCGAAAGAGTCCTTGCCACTCTGAAGTTGTGGAAATGAAGAAGCCGGGGCAACTAATAACCAAGGGACATAAGAATTATGATTTGGTGCTTAGTCTTCAGCTAGGTATTAGGTAAAGCTGCCTCTTATTGCTCTCTTCAGCATTTAGTTCATGTTTTTTGCATTTTAAGAACCTTACGTAGTTGGTTATGTATTCATATATATGCACATATGCAGGTATTCTACTCAGAAGCACGCCTCAATTACCCGAGAACCAAAGAATGGGGATTTTGATCCTAATGAGAAGTTCTGGACAAGGTTTCCACCTGAGGGTTCCAAATCCACACCACCCCATCAGGTTGTGGACTTCAAATGGAAGGACTACTGTCCCGTGGTTTTCAAGTATGTTTAGTGGGATCCCAGATCCAGTCTTTTCTATCTTGTAGTAGAAGAGATTGAATTGTTGTTATTATTTAGCCATTATTGGTTTTCAATATTGGCACTGCTGGTATGTGGTTGAGCTAAGTACAGCATTATATTAATTGCTTTCTCCTTTTCGTTAATGTTGTTAGGAATCTTAGGGAGTTATTTGGAATCGATCCAGCTGAATACATGCTGGCTATCTGTGGAAGTGATGCACTTAGGGAACTGTCTTCCCCTGGGAAAAGTGGCAGCAACTTCTATCTAACTCAAGATGACCGATTTATCATCAAAACTTTGAAAAAGTCCGAAGT</genome_strand>
        <mrna_strand>GGAATGTTAATTTACCGAGGATTTGCATATGGGAATCTGATGGTGAAGCAGGAGATATTACTTGTGACATTGTTGACAATAGGGAGGCTTCTTCTATGTTTGTTCCTAGGAATGATGATGACGAGGACGAGGATGATGATGATGATGAAGAGAGTGAGAGTTCCGAAGGAGATGAAAGTGGGGATTTTCGAAAGAGTCCTTGCCACTCTGAAGTTGTGGAAATGAAGAAGCCGGGGCAACTAATAACCAAGGGACATAAGAATTATGATTTGGTGCTTAGTCTTCAGCTAGGTATTAG........................................................................................................GTATTCTACTCAGAAGCACGCCTCAATTACCCGAGAACCAAAGAATGGGGATTTTGATCCTAATGAGAAGTTCTGGACAAGGTTTCCACCTGAGGGTTCCAAATCCACACCACCCCATCAGGTTGTGGACTTCAAATGGAAGGACTACTGTCCCGTGGTTTTCAA..........................................................................................................................................................................GAATCTTAGGGAGTTATTTGGAATCGATCCAGCTGAATACATGCTGGCTATCTGTGGAAGTGATGCACTTAGGGAACTGTCTTTCCCCTGGAAAAGTGGCAGCAACTTCTATCTAACTCAAGATGACCGATTTATCATCAAAACTTTGAAAAAGTCCGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359221" ref_strand="+" ref_description="SGN-E359221 [cLHT-11-B14]">
      <seq>atctctgtttgagcaaaacaacaatggcttcctcctcagcttcttcttcttcttcttcttcaaatctctctgcaattttccctaattcttcatcattcaattcccaacttacccatctattcccaattcaatcttcttatttcaacaaaaattacaaaaaaaatgcactaaaattttcatcattatcttgctctgcagcgaaacaacaaactggaccagtgaagaaacgtacatctaccaataatactaagaagaaaaagaaacccatttccaatttcgaaagcgatgttgaagttgaagaaaaaggggtacagtcttctgagacgtaccatcctttgccgctacctaaacccccagctgggtttgttttggatgagcagggcagagttctcatggcttccaataagcgtattgctacaatcgtgagtttttcttttactgatataagctgctaaactttggttaatagtatgctatatgtggagttcaagttttatgcacgggtagtctggttacgtagaagcaaatttcaggtaaatatgtgcactaacatgggtcgatagctaaagtacaaggggtgtggtggaaatagatgagattgctccatccttaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="+" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="103047" stop="104255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103347" g_stop="103955" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="+" ref_id="SGN-E359221" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103347" e_stop="103955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTGTTAGAGCAAAACAACAATGGCTTCCTCCTCAG---CTTC---TTCTTCTTCTTCAAATCTCTCTGCAATTTTCCCAAATTCTTCATCATTCAATTCCCAAATTACCCATCTATTCCCAATCCAATCTTCTTATTTCAACAAAAATTACAGAGAAAATGCACTAAAATTTTCATCATTATCTTGCTCTGCAGCGAAACAACAAACTGGACCAGTGAAGAAACGTACATCTACCAATAATACTAAGAAGAAAAAGAAACCCATTTCCAATTTCGAAAGCGATGTTGAAGTTGAAGAAAAAGGGGTACAGTCTTCTGAGACGTACCATCCTTTGCCGCTACCTAAACCCCCAGCTGGGTTTGTTTTGGATGAGCAGGGCAGAGTTCTCATGGCTTCCAATAAGCGTATTGCTACAATCGTGAGTTTTTCTTTTACTGATATAAGCTGCTAAACTTTGGTTAATAGTATGCTATATGTGGAGTTTAAGTTTTATGCACGGATTGTCTGGATACTTAGAAGCAAATTTCAGGTAAATATGTGCACTAACATGGGTCGATAGCTAAAGTGCAAGGGGTGTGGTGGAAATAGATGAGATTGCTCCATCCTTAACG</genome_strand>
        <mrna_strand>ATCTCTGTTTGAGCAAAACAACAATGGCTTCCTCCTCAGCTTCTTCTTCTTCTTCTTCTTCAAATCTCTCTGCAATTTTCCCTAATTCTTCATCATTCAATTCCCAACTTACCCATCTATTCCCAATTCAATCTTCTTATTTCAACAAAAATTACAAAAAAAATGCACTAAAATTTTCATCATTATCTTGCTCTGCAGCGAAACAACAAACTGGACCAGTGAAGAAACGTACATCTACCAATAATACTAAGAAGAAAAAGAAACCCATTTCCAATTTCGAAAGCGATGTTGAAGTTGAAGAAAAAGGGGTACAGTCTTCTGAGACGTACCATCCTTTGCCGCTACCTAAACCCCCAGCTGGGTTTGTTTTGGATGAGCAGGGCAGAGTTCTCATGGCTTCCAATAAGCGTATTGCTACAATCGTGAGTTTTTCTTTTACTGATATAAGCTGCTAAACTTTGGTTAATAGTATGCTATATGTGGAGTTCAAGTTTTATGCACGGGTAGTCTGGTTACGTAGAAGCAAATTTCAGGTAAATATGTGCACTAACATGGGTCGATAGCTAAAGTACAAGGGGTGTGGTGGAAATAGATGAGATTGCTCCATCCTTAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359223" ref_strand="+" ref_description="SGN-E359223 [cLHT-11-B18]">
      <seq>atctctgtaagagcaaaacaacaatggcttcctcctcagcttcttcttcttcttcttcttcaaatctctctgcaattttccctaattcttcatcattcaattcccaacttacccatctattcccaattcaatcttcttatttcaacaaaaattacaaaaaaaatgcactaaaattttcatcattatcttgctctgcagcgaaacaacaaactggaccagtgaagaaacgtacatctaccaataatactaagaagaaaaagaaacccatttccaatttcgaaagcgatgttgaagttgaagaaaaaggggtacagtcttctgagacgtaccatcctttgccgctacctaaacccccagctgggtttgttttggatgagcagggcagagttctcatggcttccaataagcgtattgctacaatcgtgagtttttcttttactgatataagctgctaaactttggttaatagtatgctatatgtggagttcaagttttatgcacgggtagtctggttacgtagaagcaaatttcaggtaaatatgtgcactaacatgggtcgatagctaaagtacaaggggtgtggtggaaatagatgagattgctccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="+" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="103047" stop="104247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103347" g_stop="103947" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="+" ref_id="SGN-E359223" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103347" e_stop="103947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTGTTAGAGCAAAACAACAATGGCTTCCTCCTCAG---CTTC---TTCTTCTTCTTCAAATCTCTCTGCAATTTTCCCAAATTCTTCATCATTCAATTCCCAAATTACCCATCTATTCCCAATCCAATCTTCTTATTTCAACAAAAATTACAGAGAAAATGCACTAAAATTTTCATCATTATCTTGCTCTGCAGCGAAACAACAAACTGGACCAGTGAAGAAACGTACATCTACCAATAATACTAAGAAGAAAAAGAAACCCATTTCCAATTTCGAAAGCGATGTTGAAGTTGAAGAAAAAGGGGTACAGTCTTCTGAGACGTACCATCCTTTGCCGCTACCTAAACCCCCAGCTGGGTTTGTTTTGGATGAGCAGGGCAGAGTTCTCATGGCTTCCAATAAGCGTATTGCTACAATCGTGAGTTTTTCTTTTACTGATATAAGCTGCTAAACTTTGGTTAATAGTATGCTATATGTGGAGTTTAAGTTTTATGCACGGATTGTCTGGATACTTAGAAGCAAATTTCAGGTAAATATGTGCACTAACATGGGTCGATAGCTAAAGTGCAAGGGGTGTGGTGGAAATAGATGAGATTGCTCCAT</genome_strand>
        <mrna_strand>ATCTCTGTAAGAGCAAAACAACAATGGCTTCCTCCTCAGCTTCTTCTTCTTCTTCTTCTTCAAATCTCTCTGCAATTTTCCCTAATTCTTCATCATTCAATTCCCAACTTACCCATCTATTCCCAATTCAATCTTCTTATTTCAACAAAAATTACAAAAAAAATGCACTAAAATTTTCATCATTATCTTGCTCTGCAGCGAAACAACAAACTGGACCAGTGAAGAAACGTACATCTACCAATAATACTAAGAAGAAAAAGAAACCCATTTCCAATTTCGAAAGCGATGTTGAAGTTGAAGAAAAAGGGGTACAGTCTTCTGAGACGTACCATCCTTTGCCGCTACCTAAACCCCCAGCTGGGTTTGTTTTGGATGAGCAGGGCAGAGTTCTCATGGCTTCCAATAAGCGTATTGCTACAATCGTGAGTTTTTCTTTTACTGATATAAGCTGCTAAACTTTGGTTAATAGTATGCTATATGTGGAGTTCAAGTTTTATGCACGGGTAGTCTGGTTACGTAGAAGCAAATTTCAGGTAAATATGTGCACTAACATGGGTCGATAGCTAAAGTACAAGGGGTGTGGTGGAAATAGATGAGATTGCTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319360" ref_strand="+" ref_description="SGN-E319360 [cTOB-15-O19]">
      <seq>aacaatggcttcctcctcagcttcttcttcttcttcaaatctctctgcaattttcccaaattcttcatcattcaattcccaaattacccatctattcccaatccaatcttcttatttcaacaaaaattacagagaaaatgcactaaaattttcatcattatcttgctctgcagcgaaacaacaaactggaccagtgaagaaacgtacatctaccaataatactaagaagaaaaagaaacccatttccaatttcgaaagcgatgttgaagttgaagaaaaaggggtacagtcttctgagacgtaccatcctttgccgctacctaaacccccagctgggtttgttttggatgagcagggcagagttctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="+" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="103066" stop="104034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103366" g_stop="103734" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="+" ref_id="SGN-E319360" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103366" e_stop="103734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCTTCCTCCTCAGCTTCTTCTTCTTCTTCAAATCTCTCTGCAATTTTCCCAAATTCTTCATCATTCAATTCCCAAATTACCCATCTATTCCCAATCCAATCTTCTTATTTCAACAAAAATTACAGAGAAAATGCACTAAAATTTTCATCATTATCTTGCTCTGCAGCGAAACAACAAACTGGACCAGTGAAGAAACGTACATCTACCAATAATACTAAGAAGAAAAAGAAACCCATTTCCAATTTCGAAAGCGATGTTGAAGTTGAAGAAAAAGGGGTACAGTCTTCTGAGACGTACCATCCTTTGCCGCTACCTAAACCCCCAGCTGGGTTTGTTTTGGATGAGCAGGGCAGAGTTCTCAT</genome_strand>
        <mrna_strand>AACAATGGCTTCCTCCTCAGCTTCTTCTTCTTCTTCAAATCTCTCTGCAATTTTCCCAAATTCTTCATCATTCAATTCCCAAATTACCCATCTATTCCCAATCCAATCTTCTTATTTCAACAAAAATTACAGAGAAAATGCACTAAAATTTTCATCATTATCTTGCTCTGCAGCGAAACAACAAACTGGACCAGTGAAGAAACGTACATCTACCAATAATACTAAGAAGAAAAAGAAACCCATTTCCAATTTCGAAAGCGATGTTGAAGTTGAAGAAAAAGGGGTACAGTCTTCTGAGACGTACCATCCTTTGCCGCTACCTAAACCCCCAGCTGGGTTTGTTTTGGATGAGCAGGGCAGAGTTCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325917" ref_strand="+" ref_description="SGN-E325917 [cTOC-12-G10]">
      <seq>aatggcttcctcctcagcttcttcttcttcttcaaatctctctgcaattttcccaaattcttcatcattcaattcccaaattacccatctattcccaatccaatcttcttatttcaacaaaaattacagagaaaatgcactaaaattttcatcattatcttgctctgcagcgaaacaacaaactggaccagtgaagaaacgtacatctaccaataatactaagaagaaaaagaaacccatttccaatttcgaaagcgatgttgaagttgaagaaaaaggggtacagtcttctgagacgtaccatcctttgccgctacctaaacccccagctgggtttgttttggatgagcagggcagagttctcatggcttccaataagcgtattgctacaatcgttgattctaccaacaatttcccattggaatgtgtcatcaggagggtttttagaagcacacgaggagatgaatgtctattactttgtcctgttgatatgcctgttcagatcttaaagagcacaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="+" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="103069" stop="106217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103369" g_stop="103762" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103763" i_stop="105710" i_length="1948">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105711" g_stop="105808" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="492" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105809" i_stop="105888" i_length="80">
            <donor d_prob="0.041" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105889" g_stop="105917" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="521" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="+" ref_id="SGN-E325917" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103369" e_stop="103762"/>
          <exon e_start="105711" e_stop="105808"/>
          <exon e_start="105889" e_stop="105917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTTCCTCCTCAGCTTCTTCTTCTTCTTCAAATCTCTCTGCAATTTTCCCAAATTCTTCATCATTCAATTCCCAAATTACCCATCTATTCCCAATCCAATCTTCTTATTTCAACAAAAATTACAGAGAAAATGCACTAAAATTTTCATCATTATCTTGCTCTGCAGCGAAACAACAAACTGGACCAGTGAAGAAACGTACATCTACCAATAATACTAAGAAGAAAAAGAAACCCATTTCCAATTTCGAAAGCGATGTTGAAGTTGAAGAAAAAGGGGTACAGTCTTCTGAGACGTACCATCCTTTGCCGCTACCTAAACCCCCAGCTGGGTTTGTTTTGGATGAGCAGGGCAGAGTTCTCATGGCTTCCAATAAGCGTATTGCTACAATCGTGAGTTTTTCTTTTACTGATATAAGCTGCTAAACTTTGGTTAATAGTATGCTATATGTGGAGTTTAAGTTTTATGCACGGATTGTCTGGATACTTAGAAGCAAATTTCAGGTAAATATGTGCACTAACATGGGTCGATAGCTAAAGTGCAAGGGGTGTGGTGGAAATAGATGAGATTGCTCCATCCTTAACGAGACGTTTGGGTTTGAGCTTGAAGTAGTGGTAGAACTAAAATTTTCACTAAGTGGTTTCAAAATATGAAGAATTAAACATAAGGGGTTCGGCATCTAGTTTATATACATAAACAATAATTTTAACCGTGTATAAATAGTGTAATTTTCCATTGAAGTAGGTTTGGGTGAACACCCTTGGTCCTGCACGTAAGGGGTTCAGCATCTAGTGCATATACATAAAAAATAATTTAAACCACGTATCAATCGTGTAATTCCCATTGAAGTAGGTTTGGATGTCCTTGGCCCTATCTGACCTGAAGAATGGAAAAATCCCTGGTTGGGAGCCTCTGCCCTTTAATGGGCTCTATATGGTGAAAATCTAGATTAGTCGGGTACTTGGGCTAGTAGGTACTAGATATGAGATGATAACACAAAAAACATGGGTTGGTAACTAACACCAAAGTGGGTGTGGTGGGATGAATGAGAGTCTGCACCCTTAATGAGACATCTTGGATTTCAGCTTGAAGAATGGAGAAATCCCTGCTAGGAGCCTCCACCCTTTAATGGGCTATATATGGTGGGAATCAGGATTAGTTGGGCACTTAAAGGTTCTTGCTTCGACAAAAAACATGGGTCTGTACCTAGTAAAAGAGGAAGGATAACTTGTTGGTGCATGGTGAGTTGCAATGATGGTGTAAAAATTATTTAAATTGTTCAGTATATATAATATAAAAGATATATTTGGAAATGGCCGAATTATGTGACACAGTATCTGTTACGGACAAAATCTGTAGAAATAACACTATATCTATATGTTTATGTTCTGTGGCAGAAAGGGTGAAACAACGTGCTAGTAGAATATGCAGTCTCTTCTCTTATGCTTTTCAATGATAGGATAATACTGCAAATTATGGGAAGTTAAGAACTTGCAAATGACAGAATGAATGGCTCTGAAGACTATTTGCATTACTTACATTAACTTACTCCCTTAGGGAATTCGACGAAGACCTTGAAGATCTCAATCCCTTGACATGGCTAATTGCGTGACCAGTAATTGGAAGTATTTGGGAATGATTTCCAGTTTTAAAAAGAGAGGGTAGGAAAACACGTTGAATTGATCTAACCAGATAAGGGCAATTTCTGGATAATAATCAAGTAAAGTCATTATGGCCTACAGTGTCTTCAATTAAACTGAAAAAAGGAGTATAATACACCTTGAATTTGGAGAAAACTCAACAAATAATTGCTACGTTACATACCTTTGGCACTCCGTCAATATGAGAAATGCAAGAGTTCATTGACGGAAAAGACCTGATGACAGGGAACATAAAGATAGTTCTTTCTTTTTTGTCTTTCTTCCTTTATTTTTTCTTTTGAAGTAAGAGAAATAAGAGAGTTCAGTGTGCCATGTTCAATCTAACTAAGGTCCTAGCAGAGTTCTCTGGTGAGGACAGTATTACATTTAAAAAAGCTCATCCCTTCTGAGGTCTTACAGGATTTAGTAGATTTTACAAAAGGGTGGAGAAAATGCATGTTTAACTGTACTTGGTTTTTAATCTCCCAAAGTTGAAAGCATCTATGTGGATACATAACAACGTCCATTACCTCTTAATGGGATTTCAATGTATGCAACCACCTAAGATGACTTCTATCACCTTCTCAAGTTTGACTTGTATGAGCAACTTCCTTACAATTTCATGTGCTAGTCTATTTTCTTCTGTATTTTTCTCTATTTTATCTCCGTCAATTAATTTATCTAAAGGGCTCAAAAACAGGTTGATTCTACCAACAATTTCCCATTGGAATGTGTCATCAGGAGGGTTTTTAGAAGCACACGAGGAGATGAATGTCTATTACTTTGTCCTGTTGATATGTAAGTGAGGTTTGTAGCCATTATTTGATATCTTTTCCTTTTTCTGGTGGTACATTAAATCAATGAAACTGTCTCTGCAGGCCTGTTCAGATCTTAAAGAGCACAAATG</genome_strand>
        <mrna_strand>AATGGCTTCCTCCTCAGCTTCTTCTTCTTCTTCAAATCTCTCTGCAATTTTCCCAAATTCTTCATCATTCAATTCCCAAATTACCCATCTATTCCCAATCCAATCTTCTTATTTCAACAAAAATTACAGAGAAAATGCACTAAAATTTTCATCATTATCTTGCTCTGCAGCGAAACAACAAACTGGACCAGTGAAGAAACGTACATCTACCAATAATACTAAGAAGAAAAAGAAACCCATTTCCAATTTCGAAAGCGATGTTGAAGTTGAAGAAAAAGGGGTACAGTCTTCTGAGACGTACCATCCTTTGCCGCTACCTAAACCCCCAGCTGGGTTTGTTTTGGATGAGCAGGGCAGAGTTCTCATGGCTTCCAATAAGCGTATTGCTACAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATTCTACCAACAATTTCCCATTGGAATGTGTCATCAGGAGGGTTTTTAGAAGCACACGAGGAGATGAATGTCTATTACTTTGTCCTGTTGATAT................................................................................GCCTGTTCAGATCTTAAAGAGCACAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344358" ref_strand="+" ref_description="SGN-E344358 [cTOF-16-F2]">
      <seq>tcagcttcttcttcttcttcaaatctctctgcaattttcccaaattcttcatcattcaattcccaaattacccatctattcccaatccaatcttcttatttcaacaaaaattacagagaaaatgcactaaaattttcatcattatcttgctctgcagcgaaacaacaaactggaccagtgaagaaacgtacatctaccaataatactaagaagaaaaagaaacccatttccaatttcgaaagcgatgttgaagttgaagaaaaaggggtacagtcttctgagacgtaccatcctttgccgctacctaaacccccagctgggtttgttttggatgagcagggcagagttctcatggcttccaataagcgtattgctacaatcgttgattctaccaacaatttcccattggaatgtgtcatcaggagggtttttagaagcacacgaggagatgaatgtctattactttgtcctgttgatatgcctgttcagatcttaaagagcacaaatgtcgaggggtggtctgnctgtagcgatgaagaagttgaagctatcctacccactgcagcctatgctctagccaagatacacatgcatctggtgtacagtggattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="+" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="103082" stop="106898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103382" g_stop="103762" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103763" i_stop="105710" i_length="1948">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105711" g_stop="105808" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="479" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105809" i_stop="105888" i_length="80">
            <donor d_prob="0.041" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105889" g_stop="105934" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="526" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105935" i_stop="106513" i_length="579">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106514" g_stop="106596" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="608" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106597" i_stop="106747" i_length="151">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106748" g_stop="106752" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="613" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="+" ref_id="SGN-E344358" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103382" e_stop="103762"/>
          <exon e_start="105711" e_stop="105808"/>
          <exon e_start="105889" e_stop="105934"/>
          <exon e_start="106514" e_stop="106596"/>
          <exon e_start="106748" e_stop="106752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTTCTTCTTCTTCTTCAAATCTCTCTGCAATTTTCCCAAATTCTTCATCATTCAATTCCCAAATTACCCATCTATTCCCAATCCAATCTTCTTATTTCAACAAAAATTACAGAGAAAATGCACTAAAATTTTCATCATTATCTTGCTCTGCAGCGAAACAACAAACTGGACCAGTGAAGAAACGTACATCTACCAATAATACTAAGAAGAAAAAGAAACCCATTTCCAATTTCGAAAGCGATGTTGAAGTTGAAGAAAAAGGGGTACAGTCTTCTGAGACGTACCATCCTTTGCCGCTACCTAAACCCCCAGCTGGGTTTGTTTTGGATGAGCAGGGCAGAGTTCTCATGGCTTCCAATAAGCGTATTGCTACAATCGTGAGTTTTTCTTTTACTGATATAAGCTGCTAAACTTTGGTTAATAGTATGCTATATGTGGAGTTTAAGTTTTATGCACGGATTGTCTGGATACTTAGAAGCAAATTTCAGGTAAATATGTGCACTAACATGGGTCGATAGCTAAAGTGCAAGGGGTGTGGTGGAAATAGATGAGATTGCTCCATCCTTAACGAGACGTTTGGGTTTGAGCTTGAAGTAGTGGTAGAACTAAAATTTTCACTAAGTGGTTTCAAAATATGAAGAATTAAACATAAGGGGTTCGGCATCTAGTTTATATACATAAACAATAATTTTAACCGTGTATAAATAGTGTAATTTTCCATTGAAGTAGGTTTGGGTGAACACCCTTGGTCCTGCACGTAAGGGGTTCAGCATCTAGTGCATATACATAAAAAATAATTTAAACCACGTATCAATCGTGTAATTCCCATTGAAGTAGGTTTGGATGTCCTTGGCCCTATCTGACCTGAAGAATGGAAAAATCCCTGGTTGGGAGCCTCTGCCCTTTAATGGGCTCTATATGGTGAAAATCTAGATTAGTCGGGTACTTGGGCTAGTAGGTACTAGATATGAGATGATAACACAAAAAACATGGGTTGGTAACTAACACCAAAGTGGGTGTGGTGGGATGAATGAGAGTCTGCACCCTTAATGAGACATCTTGGATTTCAGCTTGAAGAATGGAGAAATCCCTGCTAGGAGCCTCCACCCTTTAATGGGCTATATATGGTGGGAATCAGGATTAGTTGGGCACTTAAAGGTTCTTGCTTCGACAAAAAACATGGGTCTGTACCTAGTAAAAGAGGAAGGATAACTTGTTGGTGCATGGTGAGTTGCAATGATGGTGTAAAAATTATTTAAATTGTTCAGTATATATAATATAAAAGATATATTTGGAAATGGCCGAATTATGTGACACAGTATCTGTTACGGACAAAATCTGTAGAAATAACACTATATCTATATGTTTATGTTCTGTGGCAGAAAGGGTGAAACAACGTGCTAGTAGAATATGCAGTCTCTTCTCTTATGCTTTTCAATGATAGGATAATACTGCAAATTATGGGAAGTTAAGAACTTGCAAATGACAGAATGAATGGCTCTGAAGACTATTTGCATTACTTACATTAACTTACTCCCTTAGGGAATTCGACGAAGACCTTGAAGATCTCAATCCCTTGACATGGCTAATTGCGTGACCAGTAATTGGAAGTATTTGGGAATGATTTCCAGTTTTAAAAAGAGAGGGTAGGAAAACACGTTGAATTGATCTAACCAGATAAGGGCAATTTCTGGATAATAATCAAGTAAAGTCATTATGGCCTACAGTGTCTTCAATTAAACTGAAAAAAGGAGTATAATACACCTTGAATTTGGAGAAAACTCAACAAATAATTGCTACGTTACATACCTTTGGCACTCCGTCAATATGAGAAATGCAAGAGTTCATTGACGGAAAAGACCTGATGACAGGGAACATAAAGATAGTTCTTTCTTTTTTGTCTTTCTTCCTTTATTTTTTCTTTTGAAGTAAGAGAAATAAGAGAGTTCAGTGTGCCATGTTCAATCTAACTAAGGTCCTAGCAGAGTTCTCTGGTGAGGACAGTATTACATTTAAAAAAGCTCATCCCTTCTGAGGTCTTACAGGATTTAGTAGATTTTACAAAAGGGTGGAGAAAATGCATGTTTAACTGTACTTGGTTTTTAATCTCCCAAAGTTGAAAGCATCTATGTGGATACATAACAACGTCCATTACCTCTTAATGGGATTTCAATGTATGCAACCACCTAAGATGACTTCTATCACCTTCTCAAGTTTGACTTGTATGAGCAACTTCCTTACAATTTCATGTGCTAGTCTATTTTCTTCTGTATTTTTCTCTATTTTATCTCCGTCAATTAATTTATCTAAAGGGCTCAAAAACAGGTTGATTCTACCAACAATTTCCCATTGGAATGTGTCATCAGGAGGGTTTTTAGAAGCACACGAGGAGATGAATGTCTATTACTTTGTCCTGTTGATATGTAAGTGAGGTTTGTAGCCATTATTTGATATCTTTTCCTTTTTCTGGTGGTACATTAAATCAATGAAACTGTCTCTGCAGGCCTGTTCAGATCTTAAAGAGCACAAATGTCGAGGGGTGGTCTG-CTGTATGTCTTAACTAAACTTGTTTTTCCATTGTGTTTGTGGGACTGGAAACATTCTAGAGAGAATCTTGTTTGTCTATCTAATTTCTTTCTTAACAAATGATCAGTGTTCAAATGGAGTTAGGTCCAAAGTCCATATCTTAACATGGTATGAAAGCCAAATCTCTCAATCTACATTGTTGTGTTCCTCAATGTTGGGCCCCATAATCTGTGCTTCAGTTAAGTCCAAGCGTGTGGGGGAGTGTTAAGTCCCACATTAGATGGGTGATGTCTCCTTATATAATCCTAGACAATCCTCCCTGATGAGCTAGCTTTTGAGGTTGAGTTAAGCCCCAGGACCATATCTTAACACATCAAAATTTCCTGATGCTTTCTTTGTTCCAACAGTAACATGAGCTGGATGCCTTTCTTTGTTTGTTTAACTAAAAAATTCTGTTAGGGCTATTTCCATTATCTACTGGTGTTCCAATCTGTGAAAGAAGTCAGAATGCACGCATCTCTTAGAAATTAAAAAGAGAATAAGGAGCTATTGTATATTGATATCATAATTAATTATTATCAATTTATATGACTGCTGTGTAGGTAAGCGATGAAGAAGTTGAAGCTATCCTACCCACTGCAGCCTATGCTCTAGCCAAGATACACATGCATCTGGTGTACAGTGGGTATAATCTCTAGAACTTCCATATTCATGTCTACTTTATCTAAAATAAAACTTCGATTGTCAAGCCTGGTTGTTTTTTAATCTCAATTATCCTCCTTTCATGTATCAAAATCTGATTTCTTTTCTGATATCATCTAGCTATTTCGTATCAGATTCT</genome_strand>
        <mrna_strand>TCAGCTTCTTCTTCTTCTTCAAATCTCTCTGCAATTTTCCCAAATTCTTCATCATTCAATTCCCAAATTACCCATCTATTCCCAATCCAATCTTCTTATTTCAACAAAAATTACAGAGAAAATGCACTAAAATTTTCATCATTATCTTGCTCTGCAGCGAAACAACAAACTGGACCAGTGAAGAAACGTACATCTACCAATAATACTAAGAAGAAAAAGAAACCCATTTCCAATTTCGAAAGCGATGTTGAAGTTGAAGAAAAAGGGGTACAGTCTTCTGAGACGTACCATCCTTTGCCGCTACCTAAACCCCCAGCTGGGTTTGTTTTGGATGAGCAGGGCAGAGTTCTCATGGCTTCCAATAAGCGTATTGCTACAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATTCTACCAACAATTTCCCATTGGAATGTGTCATCAGGAGGGTTTTTAGAAGCACACGAGGAGATGAATGTCTATTACTTTGTCCTGTTGATAT................................................................................GCCTGTTCAGATCTTAAAGAGCACAAATGTCGAGGGGTGGTCTGNCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-AGCGATGAAGAAGTTGAAGCTATCCTACCCACTGCAGCCTATGCTCTAGCCAAGATACACATGCATCTGGTGTACAGTGG.......................................................................................................................................................ATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354694" ref_strand="+" ref_description="SGN-E354694 [cLHT-5-P10]">
      <seq>tggctcccttctcagcttcttcttcttcttcttctggaaatctctctgcaattgtgcctacctcttcatcattcaattcccaacttacccatctattcccaattcaatcttcttatttcaacaaaaattacaaaaaaaatgcactaaaattttcatcattatcttgctctgcagcgaaacaacaaactggaccagtgaagaaacgtacatctaccaataatactaagaagaaaaagaaacccatttccaatttcgaaagcgatgttgaagttgaagaaaaaggggtacagtcttatgagacgtaccatcctttgccgctacctaaaccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="+" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="103076" stop="103995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103386" g_stop="103695" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="331" r_length="310" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="+" ref_id="SGN-E354694" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103386" e_stop="103695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCTTCTTCAAATCTCTCTGCAATTTTCCCAAATTCTTCATCATTCAATTCCCAAATTACCCATCTATTCCCAATCCAATCTTCTTATTTCAACAAAAATTACAGAGAAAATGCACTAAAATTTTCATCATTATCTTGCTCTGCAGCGAAACAACAAACTGGACCAGTGAAGAAACGTACATCTACCAATAATACTAAGAAGAAAAAGAAACCCATTTCCAATTTCGAAAGCGATGTTGAAGTTGAAGAAAAAGGGGTACAGTCTTCTGAGACGTACCATCCTTTGCCGCTACCTAAACCCCC</genome_strand>
        <mrna_strand>CTTCTTCTTCTTCTGGAAATCTCTCTGCAATTGTGCCTACCTCTTCATCATTCAATTCCCAACTTACCCATCTATTCCCAATTCAATCTTCTTATTTCAACAAAAATTACAAAAAAAATGCACTAAAATTTTCATCATTATCTTGCTCTGCAGCGAAACAACAAACTGGACCAGTGAAGAAACGTACATCTACCAATAATACTAAGAAGAAAAAGAAACCCATTTCCAATTTCGAAAGCGATGTTGAAGTTGAAGAAAAAGGGGTACAGTCTTATGAGACGTACCATCCTTTGCCGCTACCTAAACCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271657" ref_strand="+" ref_description="SGN-E271657 [cLEM-23-C12]">
      <seq>aaattctttattattcaattcccaaattacccatctattcgcaatccaatcttcttatttcaacaaaaattacagagaaaatgcactaaaattttcatcattatcttgctctgcagcgaaacaacaaactggaccagtgaagaaacgtacatctaccaataatactaagaagaaaaagaaacccatttccaatttcgaaagcgatgttgaagttgaagaaaaaggggtacagtcttctgagacgtaccatcctttgccgctacctaaacccccagctgggtttgttttggatgagcagggcagagttctcatggcttccaataagcgtattgctacaatcgttgattctaccaacaatttcccattggaatgtgtcatcaggagggtttttagaagcacacgacgagatgaatgtctattactttgtcctgtagatatgcctgttcagatcttaaagagcacaaatgtccatgggtggtctgctgtaagcgatgaagaagttgaagctatcctacccactgcagcctatgctctagccaagatacacatgcatctggtgtacagtggattctgttacacagcacgaggaggatgttgctacacagaggatgacatatttgaatttagaacagatgatggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0069C22-4YNau/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0069C22.1" temp_strand="+" temp_description="C04HBa0069C22.1  CU915758.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0069C22 sequenced_by:sanger upload_account_name:uk">
        <position start="103123" stop="107112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103423" g_stop="103762" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103763" i_stop="105710" i_length="1948">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105711" g_stop="105808" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="438" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105809" i_stop="105888" i_length="80">
            <donor d_prob="0.041" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105889" g_stop="105934" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="484" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105935" i_stop="106513" i_length="579">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106514" g_stop="106596" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="567" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106597" i_stop="106747" i_length="151">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106748" g_stop="106812" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="632" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0069C22.1" gen_strand="+" ref_id="SGN-E271657" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0069C22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103423" e_stop="103762"/>
          <exon e_start="105711" e_stop="105808"/>
          <exon e_start="105889" e_stop="105934"/>
          <exon e_start="106514" e_stop="106596"/>
          <exon e_start="106748" e_stop="106812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTTCATCATTCAATTCCCAAATTACCCATCTATTCCCAATCCAATCTTCTTATTTCAACAAAAATTACAGAGAAAATGCACTAAAATTTTCATCATTATCTTGCTCTGCAGCGAAACAACAAACTGGACCAGTGAAGAAACGTACATCTACCAATAATACTAAGAAGAAAAAGAAACCCATTTCCAATTTCGAAAGCGATGTTGAAGTTGAAGAAAAAGGGGTACAGTCTTCTGAGACGTACCATCCTTTGCCGCTACCTAAACCCCCAGCTGGGTTTGTTTTGGATGAGCAGGGCAGAGTTCTCATGGCTTCCAATAAGCGTATTGCTACAATCGTGAGTTTTTCTTTTACTGATATAAGCTGCTAAACTTTGGTTAATAGTATGCTATATGTGGAGTTTAAGTTTTATGCACGGATTGTCTGGATACTTAGAAGCAAATTTCAGGTAAATATGTGCACTAACATGGGTCGATAGCTAAAGTGCAAGGGGTGTGGTGGAAATAGATGAGATTGCTCCATCCTTAACGAGACGTTTGGGTTTGAGCTTGAAGTAGTGGTAGAACTAAAATTTTCACTAAGTGGTTTCAAAATATGAAGAATTAAACATAAGGGGTTCGGCATCTAGTTTATATACATAAACAATAATTTTAACCGTGTATAAATAGTGTAATTTTCCATTGAAGTAGGTTTGGGTGAACACCCTTGGTCCTGCACGTAAGGGGTTCAGCATCTAGTGCATATACATAAAAAATAATTTAAACCACGTATCAATCGTGTAATTCCCATTGAAGTAGGTTTGGATGTCCTTGGCCCTATCTGACCTGAAGAATGGAAAAATCCCTGGTTGGGAGCCTCTGCCCTTTAATGGGCTCTATATGGTGAAAATCTAGATTAGTCGGGTACTTGGGCTAGTAGGTACTAGATATGAGATGATAACACAAAAAACATGGGTTGGTAACTAACACCAAAGTGGGTGTGGTGGGATGAATGAGAGTCTGCACCCTTAATGAGACATCTTGGATTTCAGCTTGAAGAATGGAGAAATCCCTGCTAGGAGCCTCCACCCTTTAATGGGCTATATATGGTGGGAATCAGGATTAGTTGGGCACTTAAAGGTTCTTGCTTCGACAAAAAACATGGGTCTGTACCTAGTAAAAGAGGAAGGATAACTTGTTGGTGCATGGTGAGTTGCAATGATGGTGTAAAAATTATTTAAATTGTTCAGTATATATAATATAAAAGATATATTTGGAAATGGCCGAATTATGTGACACAGTATCTGTTACGGACAAAATCTGTAGAAATAACACTATATCTATATGTTTATGTTCTGTGGCAGAAAGGGTGAAACAACGTGCTAGTAGAATATGCAGTCTCTTCTCTTATGCTTTTCAATGATAGGATAATACTGCAAATTATGGGAAGTTAAGAACTTGCAAATGACAGAATGAATGGCTCTGAAGACTATTTGCATTACTTACATTAACTTACTCCCTTAGGGAATTCGACGAAGACCTTGAAGATCTCAATCCCTTGACATGGCTAATTGCGTGACCAGTAATTGGAAGTATTTGGGAATGATTTCCAGTTTTAAAAAGAGAGGGTAGGAAAACACGTTGAATTGATCTAACCAGATAAGGGCAATTTCTGGATAATAATCAAGTAAAGTCATTATGGCCTACAGTGTCTTCAATTAAACTGAAAAAAGGAGTATAATACACCTTGAATTTGGAGAAAACTCAACAAATAATTGCTACGTTACATACCTTTGGCACTCCGTCAATATGAGAAATGCAAGAGTTCATTGACGGAAAAGACCTGATGACAGGGAACATAAAGATAGTTCTTTCTTTTTTGTCTTTCTTCCTTTATTTTTTCTTTTGAAGTAAGAGAAATAAGAGAGTTCAGTGTGCCATGTTCAATCTAACTAAGGTCCTAGCAGAGTTCTCTGGTGAGGACAGTATTACATTTAAAAAAGCTCATCCCTTCTGAGGTCTTACAGGATTTAGTAGATTTTACAAAAGGGTGGAGAAAATGCATGTTTAACTGTACTTGGTTTTTAATCTCCCAAAGTTGAAAGCATCTATGTGGATACATAACAACGTCCATTACCTCTTAATGGGATTTCAATGTATGCAACCACCTAAGATGACTTCTATCACCTTCTCAAGTTTGACTTGTATGAGCAACTTCCTTACAATTTCATGTGCTAGTCTATTTTCTTCTGTATTTTTCTCTATTTTATCTCCGTCAATTAATTTATCTAAAGGGCTCAAAAACAGGTTGATTCTACCAACAATTTCCCATTGGAATGTGTCATCAGGAGGGTTTTTAGAAGCACACGAGGAGATGAATGTCTATTACTTTGTCCTGTTGATATGTAAGTGAGGTTTGTAGCCATTATTTGATATCTTTTCCTTTTTCTGGTGGTACATTAAATCAATGAAACTGTCTCTGCAGGCCTGTTCAGATCTTAAAGAGCACAAATGTCGAGGGGTGGTCTGCTGTATGTCTTAACTAAACTTGTTTTTCCATTGTGTTTGTGGGACTGGAAACATTCTAGAGAGAATCTTGTTTGTCTATCTAATTTCTTTCTTAACAAATGATCAGTGTTCAAATGGAGTTAGGTCCAAAGTCCATATCTTAACATGGTATGAAAGCCAAATCTCTCAATCTACATTGTTGTGTTCCTCAATGTTGGGCCCCATAATCTGTGCTTCAGTTAAGTCCAAGCGTGTGGGGGAGTGTTAAGTCCCACATTAGATGGGTGATGTCTCCTTATATAATCCTAGACAATCCTCCCTGATGAGCTAGCTTTTGAGGTTGAGTTAAGCCCCAGGACCATATCTTAACACATCAAAATTTCCTGATGCTTTCTTTGTTCCAACAGTAACATGAGCTGGATGCCTTTCTTTGTTTGTTTAACTAAAAAATTCTGTTAGGGCTATTTCCATTATCTACTGGTGTTCCAATCTGTGAAAGAAGTCAGAATGCACGCATCTCTTAGAAATTAAAAAGAGAATAAGGAGCTATTGTATATTGATATCATAATTAATTATTATCAATTTATATGACTGCTGTGTAGGTAAGCGATGAAGAAGTTGAAGCTATCCTACCCACTGCAGCCTATGCTCTAGCCAAGATACACATGCATCTGGTGTACAGTGGGTATAATCTCTAGAACTTCCATATTCATGTCTACTTTATCTAAAATAAAACTTCGATTGTCAAGCCTGGTTGTTTTTTAATCTCAATTATCCTCCTTTCATGTATCAAAATCTGATTTCTTTTCTGATATCATCTAGCTATTTCGTATCAGATTCTGTTACACAGCACGAGGAGGATGTTGCTACACAGAGGATGACATATTTGAATTTAGAACAG</genome_strand>
        <mrna_strand>AAATTCTTTATTATTCAATTCCCAAATTACCCATCTATTCGCAATCCAATCTTCTTATTTCAACAAAAATTACAGAGAAAATGCACTAAAATTTTCATCATTATCTTGCTCTGCAGCGAAACAACAAACTGGACCAGTGAAGAAACGTACATCTACCAATAATACTAAGAAGAAAAAGAAACCCATTTCCAATTTCGAAAGCGATGTTGAAGTTGAAGAAAAAGGGGTACAGTCTTCTGAGACGTACCATCCTTTGCCGCTACCTAAACCCCCAGCTGGGTTTGTTTTGGATGAGCAGGGCAGAGTTCTCATGGCTTCCAATAAGCGTATTGCTACAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATTCTACCAACAATTTCCCATTGGAATGTGTCATCAGGAGGGTTTTTAGAAGCACACGACGAGATGAATGTCTATTACTTTGTCCTGTAGATAT................................................................................GCCTGTTCAGATCTTAAAGAGCACAAATGTCCATGGGTGGTCTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCGATGAAGAAGTTGAAGCTATCCTACCCACTGCAGCCTATGCTCTAGCCAAGATACACATGCATCTGGTGTACAGTGG.......................................................................................................................................................ATTCTGTTACACAGCACGAGGAGGATGTTGCTACACAGAGGATGACATATTTGAATTTAGAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>36</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="515" PGL_stop="224"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="515" e_stop="224"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="515" e_stop="224" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="515" stop="224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTTCTCCAGAACCTTTGAGAAAGCCCTCACGCCGCTTGTTCATCTTGTCCAAATCTCGGCATTCTCTTTCTATACATAAAGATTTTCAATGGCGGCGAGAATCGCATTGCTGAAGTACCTGAGAGTGGAAGCTCGGCCAGTGCAGCTTCGAAACCCTAGGCTCATCGGAGGTTCAGTTAGTCAGCTTTTCAAACGTCATTTCTCAGAGGAAGTAAGGGGATCGTTTCTCGACAAGGATGAAGTTAGGGATCGTGTTATCAACGTCGTCAAAAACTTTCAGAAAGTTGATC</gDNA_template>
            <first_frame> D  F  S  R  T  F  E  K  A  L  T  P  L  V  H  L  V  Q  I  S  A  F  S  F  Y  T  *  R  F  S  M  A  A  R  I  A  L  L  K  Y  L  R  V  E  A  R  P  V  Q  L  R  N  P  R  L  I  G  G  S  V  S  Q  L  F  K  R  H  F  S  E  E  V  R  G  S  F  L  D  K  D  E  V  R  D  R  V  I  N  V  V  K  N  F  Q  K  V  D  </first_frame>
            <second_frame>  T  S  P  E  P  L  R  K  P  S  R  R  L  F  I  L  S  K  S  R  H  S  L  S  I  H  K  D  F  Q  W  R  R  E  S  H  C  *  S  T  *  E  W  K  L  G  Q  C  S  F  E  T  L  G  S  S  E  V  Q  L  V  S  F  S  N  V  I  S  Q  R  K  *  G  D  R  F  S  T  R  M  K  L  G  I  V  L  S  T  S  S  K  T  F  R  K  L  I </second_frame>
            <third_frame>   L  L  Q  N  L  *  E  S  P  H  A  A  C  S  S  C  P  N  L  G  I  L  F  L  Y  I  K  I  F  N  G  G  E  N  R  I  A  E  V  P  E  S  G  S  S  A  S  A  A  S  K  P  *  A  H  R  R  F  S  *  S  A  F  Q  T  S  F  L  R  G  S  K  G  I  V  S  R  Q  G  *  S  *  G  S  C  Y  Q  R  R  Q  K  L  S  E  S  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0069C22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="434" stop="225"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFSMAARIALLKYLRVEARPVQLRNPRLIGGSVSQLFKRHFSEEVRGSFLDKDEVRDRVINVVKNFQKVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="48951" PGL_stop="49719"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48951" e_stop="49719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="48951" e_stop="49719" e_length="769"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48951" stop="49719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48952" stop="49453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281729" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTATAACACTGTAATATTTGGGTTGGCCAAAGAAAAAAGGGTAACCGAAGCATTTTTGCTATTCCATCAGATGAAGAAGAAAATGTATCCTGACTGTGTAACTGTATATGCTCTTCTACCTATTCTTGTGAAAGACGGTTTAGTTGAGGATGCTGTTAAGATTGTGGACGGTTTTGTTAACCAGGCTTTGAACAGGTCAGATAGATCCTTTTGGCTGCAACTGACGGAAGGTGTTTTGGGTGAAGCTGAATTAGATCATTCCATTTCTTTCGCGGAAAAACTGGCATCATATCATATTTGTAGAACTGACGTAATAATAGTGCCTGTTATTAGAGTCCTTTGCAAGCAAAAGAAAGCCCTTGATGCTCATGATCTTTTTGTTAAATTCAAGAACAAATTCGGTATTCGTCCAACACTAAGATCATATTATCCCTTGGTTGAAGGACTTCTTAATGTTAATCTTAAAGAATTGGCGTGGCATCTTTTCAAGGAGATGAAAAATTCCGCCTGTTGTGCCCCAGATGTTTATACCTATAATTTGTTTCTTGATGAACTTGGAAAGTCCGGGAAGGTTGATGAACTTTTTGAGCTGTATGAGGAGATGCTCCACAGAGGATGTAAGCCGGTCGCCATAACTTACAATATTCTCATTTCTGGTTTGGTGAAGTCTAATAAAGTAGAGAGAGCAATGGATTTTTACTATGATCTTGTAAGTGTGGGGTTTACACCTACTCCTTGTACATATGGTCCTCTCATAGATGGGCTTTT</gDNA_template>
            <first_frame> V  I  T  L  *  Y  L  G  W  P  K  K  K  G  *  P  K  H  F  C  Y  S  I  R  *  R  R  K  C  I  L  T  V  *  L  Y  M  L  F  Y  L  F  L  *  K  T  V  *  L  R  M  L  L  R  L  W  T  V  L  L  T  R  L  *  T  G  Q  I  D  P  F  G  C  N  *  R  K  V  F  W  V  K  L  N  *  I  I  P  F  L  S  R  K  N  W  H  H  I  I  F  V  E  L  T  *  *  *  C  L  L  L  E  S  F  A  S  K  R  K  P  L  M  L  M  I  F  L  L  N  S  R  T  N  S  V  F  V  Q  H  *  D  H  I  I  P  W  L  K  D  F  L  M  L  I  L  K  N  W  R  G  I  F  S  R  R  *  K  I  P  P  V  V  P  Q  M  F  I  P  I  I  C  F  L  M  N  L  E  S  P  G  R  L  M  N  F  L  S  C  M  R  R  C  S  T  E  D  V  S  R  S  P  *  L  T  I  F  S  F  L  V  W  *  S  L  I  K  *  R  E  Q  W  I  F  T  M  I  L  *  V  W  G  L  H  L  L  L  V  H  M  V  L  S  *  M  G  F  </first_frame>
            <second_frame>  L  *  H  C  N  I  W  V  G  Q  R  K  K  G  N  R  S  I  F  A  I  P  S  D  E  E  E  N  V  S  *  L  C  N  C  I  C  S  S  T  Y  S  C  E  R  R  F  S  *  G  C  C  *  D  C  G  R  F  C  *  P  G  F  E  Q  V  R  *  I  L  L  A  A  T  D  G  R  C  F  G  *  S  *  I  R  S  F  H  F  F  R  G  K  T  G  I  I  S  Y  L  *  N  *  R  N  N  S  A  C  Y  *  S  P  L  Q  A  K  E  S  P  *  C  S  *  S  F  C  *  I  Q  E  Q  I  R  Y  S  S  N  T  K  I  I  L  S  L  G  *  R  T  S  *  C  *  S  *  R  I  G  V  A  S  F  Q  G  D  E  K  F  R  L  L  C  P  R  C  L  Y  L  *  F  V  S  *  *  T  W  K  V  R  E  G  *  *  T  F  *  A  V  *  G  D  A  P  Q  R  M  *  A  G  R  H  N  L  Q  Y  S  H  F  W  F  G  E  V  *  *  S  R  E  S  N  G  F  L  L  *  S  C  K  C  G  V  Y  T  Y  S  L  Y  I  W  S  S  H  R  W  A  F </second_frame>
            <third_frame>   Y  N  T  V  I  F  G  L  A  K  E  K  R  V  T  E  A  F  L  L  F  H  Q  M  K  K  K  M  Y  P  D  C  V  T  V  Y  A  L  L  P  I  L  V  K  D  G  L  V  E  D  A  V  K  I  V  D  G  F  V  N  Q  A  L  N  R  S  D  R  S  F  W  L  Q  L  T  E  G  V  L  G  E  A  E  L  D  H  S  I  S  F  A  E  K  L  A  S  Y  H  I  C  R  T  D  V  I  I  V  P  V  I  R  V  L  C  K  Q  K  K  A  L  D  A  H  D  L  F  V  K  F  K  N  K  F  G  I  R  P  T  L  R  S  Y  Y  P  L  V  E  G  L  L  N  V  N  L  K  E  L  A  W  H  L  F  K  E  M  K  N  S  A  C  C  A  P  D  V  Y  T  Y  N  L  F  L  D  E  L  G  K  S  G  K  V  D  E  L  F  E  L  Y  E  E  M  L  H  R  G  C  K  P  V  A  I  T  Y  N  I  L  I  S  G  L  V  K  S  N  K  V  E  R  A  M  D  F  Y  Y  D  L  V  S  V  G  F  T  P  T  P  C  T  Y  G  P  L  I  D  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0069C22.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48953" stop="49717"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNTVIFGLAKEKRVTEAFLLFHQMKKKMYPDCVTVYALLPILVKDGLVEDAVKIVDGFVNQALNRSDRSFWLQLTEGVLGEAELDHSISFAEKLASYHICRTDVIIVPVIRVLCKQKKALDAHDLFVKFKNKFGIRPTLRSYYPLVEGLLNVNLKELAWHLFKEMKNSACCAPDVYTYNLFLDELGKSGKVDELFELYEEMLHRGCKPVAITYNILISGLVKSNKVERAMDFYYDLVSVGFTPTPCTYGPLIDGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="50018" PGL_stop="51364"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50018" e_stop="50417"/>
            <exon e_start="51009" e_stop="51364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.993" e_score="0.998"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="50018" e_stop="50417" e_length="400"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.993">
            <gDNA_intron_boundary i_start="50418" i_stop="51008" i_length="591"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="51009" e_stop="51364" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50018" stop="50417"/>
              <exon start="51009" stop="51364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539341" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGATCAACGGTCTTGGGAAATCTGGTAAAATGAAGGAAGCGCTGCATCTTCTTGATGAGATGAAAAGCAGAGGAATCACCCCGAATCTTTATACCTATAATACCTTGATATTCAATCTTGGGATTGTTGGAATGTTGGAGGAGGCCGGAAGGATGTATGAAGAACTTCAGCAACTCGGTCTTGAACCCGATGTTTTTACTTATAATGCTCTTATTAGGGGGTACAGCAAGTCTGGTGATCCAGATGGTGCATATGCCATTTATGAGAAAATGATGGTCGGGGGTTGTAGCCCAAATAGTGGTACTTTTGCTCAACTACCTAATTAACAGCGGACATTTTAGGTTCTTCAAGTGAAGCTTGTGAGAGCGAGTTCCTAAACTCTGCGTTGGGGCTGCTAAG : GGGTTACCTCTGCTGATTGGACGTTACTATTTGGAGCTTGTAGATGTGTCAGCAAGGTTCTTGGGGCGGGGCTGAACCTCAAAGTCTTTCGGATTTCATTTTAAGGTGCTCTATAAATCCGAATACGTTGTCTATATAAATTGTTAATATTTGGTTGTTGTAGGTTTATACCTGTGCAGCTTGTAAGAATGAGTGGGCAGTCTTAGCATTAAGTGTAGCATATCTCTTATGCTTGGTGAATACATGGTGCCTATATCTGTAGATAATTCAACCATATTTGAGGCAAAACTCTTTATAAAGTTTTGATTTGTTATTCAATTTACTAAGAAATGTAGTGATCTTCTTGTTGCTAAGAA</gDNA_template>
            <first_frame> M  I  N  G  L  G  K  S  G  K  M  K  E  A  L  H  L  L  D  E  M  K  S  R  G  I  T  P  N  L  Y  T  Y  N  T  L  I  F  N  L  G  I  V  G  M  L  E  E  A  G  R  M  Y  E  E  L  Q  Q  L  G  L  E  P  D  V  F  T  Y  N  A  L  I  R  G  Y  S  K  S  G  D  P  D  G  A  Y  A  I  Y  E  K  M  M  V  G  G  C  S  P  N  S  G  T  F  A  Q  L  P  N  *  Q  R  T  F  *  V  L  Q  V  K  L  V  R  A  S  S  *  T  L  R  W  G  C  *   : G  V  T  S  A  D  W  T  L  L  F  G  A  C  R  C  V  S  K  V  L  G  A  G  L  N  L  K  V  F  R  I  S  F  *  G  A  L  *  I  R  I  R  C  L  Y  K  L  L  I  F  G  C  C  R  F  I  P  V  Q  L  V  R  M  S  G  Q  S  *  H  *  V  *  H  I  S  Y  A  W  *  I  H  G  A  Y  I  C  R  *  F  N  H  I  *  G  K  T  L  Y  K  V  L  I  C  Y  S  I  Y  *  E  M  *  *  S  S  C  C  *  E </first_frame>
            <second_frame>  *  S  T  V  L  G  N  L  V  K  *  R  K  R  C  I  F  L  M  R  *  K  A  E  E  S  P  R  I  F  I  P  I  I  P  *  Y  S  I  L  G  L  L  E  C  W  R  R  P  E  G  C  M  K  N  F  S  N  S  V  L  N  P  M  F  L  L  I  M  L  L  L  G  G  T  A  S  L  V  I  Q  M  V  H  M  P  F  M  R  K  *  W  S  G  V  V  A  Q  I  V  V  L  L  L  N  Y  L  I  N  S  G  H  F  R  F  F  K  *  S  L  *  E  R  V  P  K  L  C  V  G  A  A  K  :  G  L  P  L  L  I  G  R  Y  Y  L  E  L  V  D  V  S  A  R  F  L  G  R  G  *  T  S  K  S  F  G  F  H  F  K  V  L  Y  K  S  E  Y  V  V  Y  I  N  C  *  Y  L  V  V  V  G  L  Y  L  C  S  L  *  E  *  V  G  S  L  S  I  K  C  S  I  S  L  M  L  G  E  Y  M  V  P  I  S  V  D  N  S  T  I  F  E  A  K  L  F  I  K  F  *  F  V  I  Q  F  T  K  K  C  S  D  L  L  V  A  K   </second_frame>
            <third_frame>   D  Q  R  S  W  E  I  W  *  N  E  G  S  A  A  S  S  *  *  D  E  K  Q  R  N  H  P  E  S  L  Y  L  *  Y  L  D  I  Q  S  W  D  C  W  N  V  G  G  G  R  K  D  V  *  R  T  S  A  T  R  S  *  T  R  C  F  Y  L  *  C  S  Y  *  G  V  Q  Q  V  W  *  S  R  W  C  I  C  H  L  *  E  N  D  G  R  G  L  *  P  K  *  W  Y  F  C  S  T  T  *  L  T  A  D  I  L  G  S  S  S  E  A  C  E  S  E  F  L  N  S  A  L  G  L  L  R :   G  Y  L  C  *  L  D  V  T  I  W  S  L  *  M  C  Q  Q  G  S  W  G  G  A  E  P  Q  S  L  S  D  F  I  L  R  C  S  I  N  P  N  T  L  S  I  *  I  V  N  I  W  L  L  *  V  Y  T  C  A  A  C  K  N  E  W  A  V  L  A  L  S  V  A  Y  L  L  C  L  V  N  T  W  C  L  Y  L  *  I  I  Q  P  Y  L  R  Q  N  S  L  *  S  F  D  L  L  F  N  L  L  R  N  V  V  I  F  L  L  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0069C22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50018" stop="50344"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MINGLGKSGKMKEALHLLDEMKSRGITPNLYTYNTLIFNLGIVGMLEEAGRMYEELQQLGLEPDVFTYNALIRGYSKSGDPDGAYAIYEKMMVGGCSPNSGTFAQLPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="54904" PGL_stop="54088"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54904" e_stop="54088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="54904" e_stop="54088" e_length="817"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54904" stop="54226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54903" stop="54348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54899" stop="54445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54855" stop="54272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54496" stop="54088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289962" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGAGGATCTTGAATTTAAATCTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAGGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGTGATACTATAACCGTAAGATATCAAATACGATTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAATCCTGACATTATTGGAGATGTTCTTTTTTTTTGTGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCGAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATAGATTGAAATGGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTAATTTTATGAAAAGGTTTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTAAAAAGTTTTGATGCAATTTTATATGGATAAATCACATTCATTGAGTACCCCAATGATTATGAGATCACTTGACATAAATGATGATTCTGTTTGATCTCAAAAGAAGGATGAGGAGTTTATTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGAAAATTTATT</gDNA_template>
            <first_frame> T  R  I  L  N  L  N  L  S  Y  S  V  D  R  *  M  V  G  Q  V  K  C  T  I  Q  V  Y  F  V  S  L  R  K  V  T  F  W  T  G  S  P  *  I  K  V  *  C  Q  W  G  T  N  K  L  L  C  D  T  I  T  V  R  Y  Q  I  R  F  V  P  W  G  I  K  V  Y  R  K  I  L  T  L  L  E  M  F  F  F  F  V  W  M  Q  *  G  L  F  *  S  G  N  I  *  K  A  *  M  H  V  M  N  N  C  N  V  E  L  D  N  E  G  Y  M  K  I  L  E  T  I  E  V  S  E  A  Y  K  S  L  K  E  T  F  S  I  K  L  Q  E  S  L  Y  R  L  K  W  S  R  K  K  K  G  T  K  E  *  P  *  L  S  L  *  F  Y  E  K  V  L  V  R  Q  N  F  V  L  T  Y  R  L  I  I  *  Q  M  K  Y  L  S  N  S  A  H  T  L  K  S  F  D  A  I  L  Y  G  *  I  T  F  I  E  Y  P  N  D  Y  E  I  T  *  H  K  *  *  F  C  L  I  S  K  E  G  *  G  V  Y  W  *  *  N  S  I  L  V  Q  S  G  H  *  C  I  L  L  T  I  F  D  Q  I  F  V  L  Q  K  I  Y  </first_frame>
            <second_frame>  R  G  S  *  I  *  I  C  H  I  V  W  T  D  K  W  L  A  K  *  N  A  Q  F  K  Y  I  L  F  H  L  E  R  *  H  F  G  L  V  V  H  K  S  R  Y  N  V  S  G  V  Q  I  N  Y  Y  V  I  L  *  P  *  D  I  K  Y  D  L  C  L  G  A  *  R  F  I  A  K  S  *  H  Y  W  R  C  S  F  F  L  C  G  C  N  E  V  C  F  D  L  A  T  Y  E  K  L  E  C  M  *  *  I  I  V  M  S  S  *  T  M  K  V  I  *  K  S  L  K  Q  S  R  C  L  K  H  I  R  V  *  K  K  L  F  Q  *  S  F  K  N  P  Y  I  D  *  N  G  Q  G  R  K  R  V  Q  K  N  D  P  N  C  P  C  N  F  M  K  R  F  W  *  D  K  I  L  S  *  P  T  D  *  *  F  D  K  *  N  I  C  L  T  V  H  I  H  *  K  V  L  M  Q  F  Y  M  D  K  S  H  S  L  S  T  P  M  I  M  R  S  L  D  I  N  D  D  S  V  *  S  Q  K  K  D  E  E  F  I  G  D  E  T  L  S  W  C  N  Q  G  T  S  A  S  Y  *  Q  Y  L  T  R  Y  L  F  C  R  K  F  I </second_frame>
            <third_frame>   E  D  L  E  F  K  S  V  I  *  C  G  Q  I  N  G  W  P  S  K  M  H  N  S  S  I  F  C  F  T  *  K  G  D  I  L  D  W  *  S  I  N  Q  G  I  M  S  V  G  Y  K  *  I  I  M  *  Y  Y  N  R  K  I  S  N  T  I  C  A  L  G  H  K  G  L  S  Q  N  P  D  I  I  G  D  V  L  F  F  C  V  D  A  M  R  F  V  L  I  W  Q  H  M  K  S  L  N  A  C  N  E  *  L  *  C  R  A  R  Q  *  R  L  Y  E  N  P  *  N  N  R  G  V  *  S  I  *  E  F  E  R  N  F  F  N  K  A  S  R  I  L  I  *  I  E  M  V  K  E  E  K  G  Y  K  R  M  T  L  I  V  L  V  I  L  *  K  G  F  G  K  T  K  F  C  L  D  L  Q  I  D  N  L  T  N  E  I  F  V  *  Q  C  T  Y  T  K  K  F  *  C  N  F  I  W  I  N  H  I  H  *  V  P  Q  *  L  *  D  H  L  T  *  M  M  I  L  F  D  L  K  R  R  M  R  S  L  L  V  M  K  L  Y  L  G  A  I  R  A  L  V  H  L  T  N  N  I  *  P  D  I  C  F  A  E  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0069C22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="54509" PGL_stop="55185"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54509" e_stop="55185"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="54509" e_stop="55185" e_length="677"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54509" stop="55185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54509" stop="54912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTCGACATTACAATTATTCATTACATGCATTCAAGCTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACACAAAAAAAAAGAACATCTCCAATAATGTCAGGATTTTGCGATAAACCTTTATGCCCCAAGGCACAAATCGTATTTGATATCTTACGGTTATAGTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACCTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTCCACACTATATGACAGATTTAAATTCAAGATCCTCGTCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATATCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCATTTTTCATTATTTCAGGTATGTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCTTTTATAGCACTTGTCTCATTATCATGACCATATTGATCATTTGTTCCTTCCTTCTTCAAAGAATTTTATATTTGGAATCGATTGGTCTATTACGCTTCCGGCGTATCATAGACTCTG</gDNA_template>
            <first_frame> F  R  H  L  D  C  F  K  D  F  H  I  T  F  I  V  *  L  D  I  T  I  I  H  Y  M  H  S  S  F  S  Y  V  A  R  S  K  Q  T  S  L  H  P  H  K  K  K  E  H  L  Q  *  C  Q  D  F  A  I  N  L  Y  A  P  R  H  K  S  Y  L  I  S  Y  G  Y  S  I  T  *  *  F  I  C  T  P  L  T  L  Y  L  D  L  W  T  T  S  P  K  C  H  L  S  K  *  N  K  I  Y  L  N  C  A  F  Y  L  A  N  H  L  S  V  H  T  I  *  Q  I  *  I  Q  D  P  R  H  N  L  Y  H  *  A  L  P  H  I  K  D  I  V  D  G  Y  L  I  S  I  P  T  R  H  N  L  S  R  S  L  H  F  S  L  F  Q  V  C  E  P  F  S  R  F  Y  E  V  L  C  Q  C  A  L  L  *  H  L  S  H  Y  H  D  H  I  D  H  L  F  L  P  S  S  K  N  F  I  F  G  I  D  W  S  I  T  L  P  A  Y  H  R  L   </first_frame>
            <second_frame>  S  D  T  S  I  V  S  R  I  F  I  *  P  S  L  S  S  S  T  L  Q  L  F  I  T  C  I  Q  A  F  H  M  L  P  D  Q  N  K  P  H  C  I  H  T  K  K  K  N  I  S  N  N  V  R  I  L  R  *  T  F  M  P  Q  G  T  N  R  I  *  Y  L  T  V  I  V  S  H  N  N  L  F  V  P  H  *  H  Y  T  L  I  Y  G  L  P  V  Q  N  V  T  F  L  S  E  T  K  Y  T  *  I  V  H  F  T  W  P  T  I  Y  L  S  T  L  Y  D  R  F  K  F  K  I  L  V  T  I  Y  I  I  E  R  Y  L  I  S  K  I  S  S  T  V  I  *  Y  R  F  Q  Q  D  I  T  Y  R  D  L  F  I  F  H  Y  F  R  Y  V  N  L  F  Q  D  F  M  K  C  Y  V  N  V  L  F  Y  S  T  C  L  I  I  M  T  I  L  I  I  C  S  F  L  L  Q  R  I  L  Y  L  E  S  I  G  L  L  R  F  R  R  I  I  D  S  </second_frame>
            <third_frame>   Q  T  P  R  L  F  Q  G  F  S  Y  N  L  H  C  L  A  R  H  Y  N  Y  S  L  H  A  F  K  L  F  I  C  C  Q  I  K  T  N  L  I  A  S  T  Q  K  K  R  T  S  P  I  M  S  G  F  C  D  K  P  L  C  P  K  A  Q  I  V  F  D  I  L  R  L  *  Y  H  I  I  I  Y  L  Y  P  T  D  I  I  P  *  F  M  D  Y  Q  S  K  M  S  P  F  *  V  K  Q  N  I  L  E  L  C  I  L  L  G  Q  P  F  I  C  P  H  Y  M  T  D  L  N  S  R  S  S  S  Q  F  I  S  L  S  A  T  S  Y  Q  R  Y  R  R  R  L  F  D  I  D  S  N  K  T  *  L  I  E  I  S  S  F  F  I  I  S  G  M  *  T  F  F  K  I  L  *  S  V  M  S  M  C  S  F  I  A  L  V  S  L  S  *  P  Y  *  S  F  V  P  S  F  F  K  E  F  Y  I  W  N  R  L  V  Y  Y  A  S  G  V  S  *  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0069C22.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54963" stop="55184"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRFQQDITYRDLFIFHYFRYVNLFQDFMKCYVNVLFYSTCLIIMTILIICSFLLQRILYLESIGLLRFRRIIDS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0069C22.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54511" stop="54732"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTPRLFQGFSYNLHCLARHYNYSLHAFKLFICCQIKTNLIASTQKKRTSPIMSGFCDKPLCPKAQIVFDILRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="57889" PGL_stop="57504"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57889" e_stop="57504"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="57889" e_stop="57504" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57889" stop="57504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTAGTTTTTCTTTGACTCATGTTTTGGTTGATCTCGTTATGAGAATCAAGGTATTATATGCATAAAATCAGGTATGTATTTTCTAGAATATTTTATGATTTAGAATAAAAATAATATTCAGTCACTAACAATTATCAAGAACCGAAGACATATACTACTATTGGTTGAATATAACATGCTATACAAAACTTCTTAAATAGAAGAAGGTATAAAAATTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGGTGAATCATGTTGTACTTCGGTCTATTATACCGTTGGTTAAGGGTAAGGTGATGGATTCAAGTTTCATCG</gDNA_template>
            <first_frame> F  Y  N  T  L  S  A  R  V  S  S  Q  L  R  L  S  F  S  F  S  L  T  H  V  L  V  D  L  V  M  R  I  K  V  L  Y  A  *  N  Q  V  C  I  F  *  N  I  L  *  F  R  I  K  I  I  F  S  H  *  Q  L  S  R  T  E  D  I  Y  Y  Y  W  L  N  I  T  C  Y  T  K  L  L  K  *  K  K  V  *  K  F  N  S  M  S  L  N  V  I  L  I  V  L  K  D  S  K  G  E  S  C  C  T  S  V  Y  Y  T  V  G  *  G  *  G  D  G  F  K  F  H   </first_frame>
            <second_frame>  F  I  T  R  Y  Q  H  E  S  L  A  N  *  D  *  V  L  V  F  L  *  L  M  F  W  L  I  S  L  *  E  S  R  Y  Y  M  H  K  I  R  Y  V  F  S  R  I  F  Y  D  L  E  *  K  *  Y  S  V  T  N  N  Y  Q  E  P  K  T  Y  T  T  I  G  *  I  *  H  A  I  Q  N  F  L  N  R  R  R  Y  K  N  L  I  A  *  V  *  M  L  F  *  L  F  *  K  T  Q  R  V  N  H  V  V  L  R  S  I  I  P  L  V  K  G  K  V  M  D  S  S  F  I  </second_frame>
            <third_frame>   L  *  H  V  I  S  T  S  L  *  P  I  K  I  E  F  *  F  F  F  D  S  C  F  G  *  S  R  Y  E  N  Q  G  I  I  C  I  K  S  G  M  Y  F  L  E  Y  F  M  I  *  N  K  N  N  I  Q  S  L  T  I  I  K  N  R  R  H  I  L  L  L  V  E  Y  N  M  L  Y  K  T  S  *  I  E  E  G  I  K  I  *  *  H  E  F  E  C  Y  F  D  C  F  E  R  L  K  G  *  I  M  L  Y  F  G  L  L  Y  R  W  L  R  V  R  *  W  I  Q  V  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0069C22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="76350" PGL_stop="60724"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70547" e_stop="70450"/>
            <exon e_start="69732" e_stop="69661"/>
            <exon e_start="69239" e_stop="69085"/>
            <exon e_start="68998" e_stop="68941"/>
            <exon e_start="68527" e_stop="68447"/>
            <exon e_start="68345" e_stop="68259"/>
            <exon e_start="67827" e_stop="67756"/>
            <exon e_start="67659" e_stop="67525"/>
            <exon e_start="67198" e_stop="67125"/>
            <exon e_start="64454" e_stop="64367"/>
            <exon e_start="63831" e_stop="63754"/>
            <exon e_start="62699" e_stop="62624"/>
            <exon e_start="62464" e_stop="62424"/>
            <exon e_start="61094" e_stop="60724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.807" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.946" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70547" e_stop="70450" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.829">
            <gDNA_intron_boundary i_start="70449" i_stop="69733" i_length="717"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69732" e_stop="69661" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="69660" i_stop="69240" i_length="421"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69239" e_stop="69085" e_length="155"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="69084" i_stop="68999" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68998" e_stop="68941" e_length="58"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.822">
            <gDNA_intron_boundary i_start="68940" i_stop="68528" i_length="413"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68527" e_stop="68447" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.965" acc_prob="0.987">
            <gDNA_intron_boundary i_start="68446" i_stop="68346" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="68345" e_stop="68259" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.973" acc_prob="0.996">
            <gDNA_intron_boundary i_start="68258" i_stop="67828" i_length="431"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67827" e_stop="67756" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.904">
            <gDNA_intron_boundary i_start="67755" i_stop="67660" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67659" e_stop="67525" e_length="135"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.807">
            <gDNA_intron_boundary i_start="67524" i_stop="67199" i_length="326"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="67198" e_stop="67125" e_length="74"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="0.902">
            <gDNA_intron_boundary i_start="67124" i_stop="64455" i_length="2670"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64454" e_stop="64367" e_length="88"/>
          </exon>
          <intron i_serial="10" don_prob="0.884" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64366" i_stop="63832" i_length="535"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="63831" e_stop="63754" e_length="78"/>
          </exon>
          <intron i_serial="11" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63753" i_stop="62700" i_length="1054"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="62699" e_stop="62624" e_length="76"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62623" i_stop="62465" i_length="159"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="62464" e_stop="62424" e_length="41"/>
          </exon>
          <intron i_serial="13" don_prob="0.987" acc_prob="0.946">
            <gDNA_intron_boundary i_start="62423" i_stop="61095" i_length="1329"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="61094" e_stop="60724" e_length="371"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70547" stop="70450"/>
              <exon start="69732" stop="69661"/>
              <exon start="69239" stop="69085"/>
              <exon start="68998" stop="68941"/>
              <exon start="68527" stop="68447"/>
              <exon start="68345" stop="68259"/>
              <exon start="67827" stop="67756"/>
              <exon start="67659" stop="67525"/>
              <exon start="67198" stop="67125"/>
              <exon start="64454" stop="64401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67638" stop="67525"/>
              <exon start="67198" stop="67125"/>
              <exon start="64454" stop="64367"/>
              <exon start="63831" stop="63754"/>
              <exon start="62699" stop="62624"/>
              <exon start="62464" stop="62424"/>
              <exon start="61094" stop="60724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67177" stop="67125"/>
              <exon start="64454" stop="64367"/>
              <exon start="63831" stop="63754"/>
              <exon start="62699" stop="62624"/>
              <exon start="62464" stop="62424"/>
              <exon start="61094" stop="60753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314642" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64415" stop="64367"/>
              <exon start="63831" stop="63754"/>
              <exon start="62699" stop="62624"/>
              <exon start="62464" stop="62424"/>
              <exon start="61094" stop="60782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63797" stop="63754"/>
              <exon start="62699" stop="62624"/>
              <exon start="62464" stop="62424"/>
              <exon start="61094" stop="60789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288530" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTACTATGATCCATATCGGGGCGTTATTGTTTATTTTCGAGTCATTGATGGGACTATTAAGAAAGGTGATAGAGTGCTTTTTATGGCCAGTGGGAAG : GATTATTATGCTGATGAATTAGGAGTTTTATCTCCCAACCAGTTGCAAGTTGATCAATTATACGCTGGAGAG : GTGGGGTTTCTTTCAGCCTCCATAAGATCCGTAGCTGATGCTAGGGTGGGTGACACCATAACACACTTCCAGAGAAAAGCAGAACAATCATTACCGGGATACAAGGAGGCTACTCCAATGGTTTTTTGTGGCTTGTTCCCTGTTGATGCCGACCA : GTTTAGTGAGCTACGTGATGCGTTGGAGAAATTGCAACTTAATGATGCTGCATTGAAG : TTTGAGCCAGAGACTTCAAGTGCTATGGGTTTTGGATTTCGATGTGGGTTTTTGGGTCTTCTTCACATGGAAATTGTTCAG : GAAAGGCTCGAGCGCGAGTACAATTTGTCTCTAATAACTACAGCCCCAAGTGTTGTTTACAGAGTCCATTGCATAGATGGTGATACT : GTTGAGTGTTCAAATCCATCTTTGCTTCCTGAACCTGGAAAAAGACGGTCAATTGAAGAGCCATTTGTTAAG : ATTGAGCTGCTCACACCAAAAGAATATATAGGTGCTCTTATGGAACTGGCTCAAGATCGACGAGGAATATTCAAAGAGATGAAATATATTACCGAGAATAGAGCATCTATCATATATGAATTGCCTCTTGCTGAG : ATGGTTGGAGATTTCTTTGATCAGCTAAAGTCAAGAAGCAAAGGTTATGCAAGCATGGAATACAACTTCATTGG : GTATACAGAAAGTGATTTGATAAAGCTTGATATTCTCATAAATGGTGATCGTGTCGAACCCTTGGCAACAATCGTACATAAAGATAAG : GCATATTCTGTGGGAAGGGCTTTAACCCAAAAGCTGAAAGAACTTATACCCAGACAAATGTTTAAAGTACCAATTCAG : GCAACCATTGGCTCAAAAGTGATTGCCAGCGAGGCAATATCTGCTATCAGGAAGGATGTTCTCGCCAAGTGCTATG : GTGGTGACATCTCGAGAAAAAAGAAACTGCTCAAGAAACAG : GCTGAAGGAAAGAAAAGGATGAAAGCCATTGGTAAAGTTGATGTACCACAGGAAGCATTCATGGCTGTATTAAAACTTGAAAAAGAGGTCTTATAATTCATTTTGTTAGTAAAGATTTTTACCGTACATCCTACCCTCGTCAGACCCTATTGGGTTCGCGGGCAAAATGCAGTAAAGAAAGTGGGGACTACATTGATTCTGATATAAATATCATGTGAATAGCTGTATGACCTGGGATTTTTTTAATTTTCTTTTTGAGTTTTTTGCATTATTTCAAACACAGCATTAATGAATAGCTAATTCAGATTGAGAAGTTCCTATTTAAGTGACTTTGTATATAAAGGAGCAGTTATCTTTTGTTAATTACAGTT</gDNA_template>
            <first_frame> V  T  M  I  H  I  G  A  L  L  F  I  F  E  S  L  M  G  L  L  R  K  V  I  E  C  F  L  W  P  V  G  R :   I  I  M  L  M  N  *  E  F  Y  L  P  T  S  C  K  L  I  N  Y  T  L  E  R :   W  G  F  F  Q  P  P  *  D  P  *  L  M  L  G  W  V  T  P  *  H  T  S  R  E  K  Q  N  N  H  Y  R  D  T  R  R  L  L  Q  W  F  F  V  A  C  S  L  L  M  P  T   : S  L  V  S  Y  V  M  R  W  R  N  C  N  L  M  M  L  H  *  S :   L  S  Q  R  L  Q  V  L  W  V  L  D  F  D  V  G  F  W  V  F  F  T  W  K  L  F  R :   K  G  S  S  A  S  T  I  C  L  *  *  L  Q  P  Q  V  L  F  T  E  S  I  A  *  M  V  I  L :   L  S  V  Q  I  H  L  C  F  L  N  L  E  K  D  G  Q  L  K  S  H  L  L  R :   L  S  C  S  H  Q  K  N  I  *  V  L  L  W  N  W  L  K  I  D  E  E  Y  S  K  R  *  N  I  L  P  R  I  E  H  L  S  Y  M  N  C  L  L  L  R :   W  L  E  I  S  L  I  S  *  S  Q  E  A  K  V  M  Q  A  W  N  T  T  S  L   : G  I  Q  K  V  I  *  *  S  L  I  F  S  *  M  V  I  V  S  N  P  W  Q  Q  S  Y  I  K  I  R :   H  I  L  W  E  G  L  *  P  K  S  *  K  N  L  Y  P  D  K  C  L  K  Y  Q  F  R :   Q  P  L  A  Q  K  *  L  P  A  R  Q  Y  L  L  S  G  R  M  F  S  P  S  A  M  :  V  V  T  S  R  E  K  R  N  C  S  R  N  R :   L  K  E  R  K  G  *  K  P  L  V  K  L  M  Y  H  R  K  H  S  W  L  Y  *  N  L  K  K  R  S  Y  N  S  F  C  *  *  R  F  L  P  Y  I  L  P  S  S  D  P  I  G  F  A  G  K  M  Q  *  R  K  W  G  L  H  *  F  *  Y  K  Y  H  V  N  S  C  M  T  W  D  F  F  N  F  L  F  E  F  F  A  L  F  Q  T  Q  H  *  *  I  A  N  S  D  *  E  V  P  I  *  V  T  L  Y  I  K  E  Q  L  S  F  V  N  Y  S  </first_frame>
            <second_frame>  L  L  *  S  I  S  G  R  Y  C  L  F  S  S  H  *  W  D  Y  *  E  R  *  *  S  A  F  Y  G  Q  W  E   : G  L  L  C  *  *  I  R  S  F  I  S  Q  P  V  A  S  *  S  I  I  R  W  R   : G  G  V  S  F  S  L  H  K  I  R  S  *  C  *  G  G  *  H  H  N  T  L  P  E  K  S  R  T  I  I  T  G  I  Q  G  G  Y  S  N  G  F  L  W  L  V  P  C  *  C  R  P  :  V  *  *  A  T  *  C  V  G  E  I  A  T  *  *  C  C  I  E   : V  *  A  R  D  F  K  C  Y  G  F  W  I  S  M  W  V  F  G  S  S  S  H  G  N  C  S   : G  K  A  R  A  R  V  Q  F  V  S  N  N  Y  S  P  K  C  C  L  Q  S  P  L  H  R  W  *  Y   : C  *  V  F  K  S  I  F  A  S  *  T  W  K  K  T  V  N  *  R  A  I  C  *   : D  *  A  A  H  T  K  R  I  Y  R  C  S  Y  G  T  G  S  R  S  T  R  N  I  Q  R  D  E  I  Y  Y  R  E  *  S  I  Y  H  I  *  I  A  S  C  *   : D  G  W  R  F  L  *  S  A  K  V  K  K  Q  R  L  C  K  H  G  I  Q  L  H  W  :  V  Y  R  K  *  F  D  K  A  *  Y  S  H  K  W  *  S  C  R  T  L  G  N  N  R  T  *  R  *   : G  I  F  C  G  K  G  F  N  P  K  A  E  R  T  Y  T  Q  T  N  V  *  S  T  N  S   : G  N  H  W  L  K  S  D  C  Q  R  G  N  I  C  Y  Q  E  G  C  S  R  Q  V  L  W :   W  *  H  L  E  K  K  E  T  A  Q  E  T   : G  *  R  K  E  K  D  E  S  H  W  *  S  *  C  T  T  G  S  I  H  G  C  I  K  T  *  K  R  G  L  I  I  H  F  V  S  K  D  F  Y  R  T  S  Y  P  R  Q  T  L  L  G  S  R  A  K  C  S  K  E  S  G  D  Y  I  D  S  D  I  N  I  M  *  I  A  V  *  P  G  I  F  L  I  F  F  L  S  F  L  H  Y  F  K  H  S  I  N  E  *  L  I  Q  I  E  K  F  L  F  K  *  L  C  I  *  R  S  S  Y  L  L  L  I  T  V </second_frame>
            <third_frame>   Y  Y  D  P  Y  R  G  V  I  V  Y  F  R  V  I  D  G  T  I  K  K  G  D  R  V  L  F  M  A  S  G  K  :  D  Y  Y  A  D  E  L  G  V  L  S  P  N  Q  L  Q  V  D  Q  L  Y  A  G  E  :  V  G  F  L  S  A  S  I  R  S  V  A  D  A  R  V  G  D  T  I  T  H  F  Q  R  K  A  E  Q  S  L  P  G  Y  K  E  A  T  P  M  V  F  C  G  L  F  P  V  D  A  D  Q :   F  S  E  L  R  D  A  L  E  K  L  Q  L  N  D  A  A  L  K  :  F  E  P  E  T  S  S  A  M  G  F  G  F  R  C  G  F  L  G  L  L  H  M  E  I  V  Q  :  E  R  L  E  R  E  Y  N  L  S  L  I  T  T  A  P  S  V  V  Y  R  V  H  C  I  D  G  D  T  :  V  E  C  S  N  P  S  L  L  P  E  P  G  K  R  R  S  I  E  E  P  F  V  K  :  I  E  L  L  T  P  K  E  Y  I  G  A  L  M  E  L  A  Q  D  R  R  G  I  F  K  E  M  K  Y  I  T  E  N  R  A  S  I  I  Y  E  L  P  L  A  E  :  M  V  G  D  F  F  D  Q  L  K  S  R  S  K  G  Y  A  S  M  E  Y  N  F  I  G :   Y  T  E  S  D  L  I  K  L  D  I  L  I  N  G  D  R  V  E  P  L  A  T  I  V  H  K  D  K  :  A  Y  S  V  G  R  A  L  T  Q  K  L  K  E  L  I  P  R  Q  M  F  K  V  P  I  Q  :  A  T  I  G  S  K  V  I  A  S  E  A  I  S  A  I  R  K  D  V  L  A  K  C  Y   : G  G  D  I  S  R  K  K  K  L  L  K  K  Q  :  A  E  G  K  K  R  M  K  A  I  G  K  V  D  V  P  Q  E  A  F  M  A  V  L  K  L  E  K  E  V  L  *  F  I  L  L  V  K  I  F  T  V  H  P  T  L  V  R  P  Y  W  V  R  G  Q  N  A  V  K  K  V  G  T  T  L  I  L  I  *  I  S  C  E  *  L  Y  D  L  G  F  F  *  F  S  F  *  V  F  C  I  I  S  N  T  A  L  M  N  S  *  F  R  L  R  S  S  Y  L  S  D  F  V  Y  K  G  A  V  I  F  C  *  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0069C22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70545" stop="70450"/>
                    <exon start="69732" stop="69661"/>
                    <exon start="69239" stop="69085"/>
                    <exon start="68998" stop="68941"/>
                    <exon start="68527" stop="68447"/>
                    <exon start="68345" stop="68259"/>
                    <exon start="67827" stop="67756"/>
                    <exon start="67659" stop="67525"/>
                    <exon start="67198" stop="67125"/>
                    <exon start="64454" stop="64367"/>
                    <exon start="63831" stop="63754"/>
                    <exon start="62699" stop="62624"/>
                    <exon start="62464" stop="62424"/>
                    <exon start="61094" stop="60999"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1206</number_coding_nucleotides>
                  <number_encoded_amino_acids>402</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYDPYRGVIVYFRVIDGTIKKGDRVLFMASGKDYYADELGVLSPNQLQVDQLYAGEVGFLSASIRSVADARVGDTITHFQRKAEQSLPGYKEATPMVFCGLFPVDADQFSELRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVHCIDGDTVECSNPSLLPEPGKRRSIEEPFVKIELLTPKEYIGALMELAQDRRGIFKEMKYITENRASIIYELPLAEMVGDFFDQLKSRSKGYASMEYNFIGYTESDLIKLDILINGDRVEPLATIVHKDKAYSVGRALTQKLKELIPRQMFKVPIQATIGSKVIASEAISAIRKDVLAKCYGGDISRKKKLLKKQAEGKKRMKAIGKVDVPQEAFMAVLKLEKEVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76350" e_stop="76214"/>
            <exon e_start="75270" e_stop="75094"/>
            <exon e_start="74013" e_stop="73927"/>
            <exon e_start="72702" e_stop="72646"/>
            <exon e_start="72471" e_stop="72406"/>
            <exon e_start="71572" e_stop="71510"/>
            <exon e_start="71136" e_stop="71092"/>
            <exon e_start="70936" e_stop="70836"/>
            <exon e_start="70546" e_stop="70536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.860" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.954" e_score="0.956"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.970"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76350" e_stop="76214" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.973">
            <gDNA_intron_boundary i_start="76213" i_stop="75271" i_length="943"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75270" e_stop="75094" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="0.982">
            <gDNA_intron_boundary i_start="75093" i_stop="74014" i_length="1080"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74013" e_stop="73927" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73926" i_stop="72703" i_length="1224"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72702" e_stop="72646" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="72645" i_stop="72472" i_length="174"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72471" e_stop="72406" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.994">
            <gDNA_intron_boundary i_start="72405" i_stop="71573" i_length="833"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71572" e_stop="71510" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.860">
            <gDNA_intron_boundary i_start="71509" i_stop="71137" i_length="373"/>
          </intron>
          <exon e_serial="7" e_score="0.956">
            <gDNA_exon_boundary e_start="71136" e_stop="71092" e_length="45"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.954">
            <gDNA_intron_boundary i_start="71091" i_stop="70937" i_length="155"/>
          </intron>
          <exon e_serial="8" e_score="0.970">
            <gDNA_exon_boundary e_start="70936" e_stop="70836" e_length="101"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="70835" i_stop="70547" i_length="289"/>
          </intron>
          <exon e_serial="9" e_score="0.909">
            <gDNA_exon_boundary e_start="70546" e_stop="70536" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76350" stop="76214"/>
              <exon start="75270" stop="75094"/>
              <exon start="74013" stop="73927"/>
              <exon start="72702" stop="72646"/>
              <exon start="72471" stop="72406"/>
              <exon start="71572" stop="71510"/>
              <exon start="71136" stop="71092"/>
              <exon start="70936" stop="70836"/>
              <exon start="70546" stop="70536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76349" stop="76214"/>
              <exon start="75270" stop="75094"/>
              <exon start="74013" stop="73928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGCAAACGCGGCGACGGAGCTCAGTCCGTACGACGGCGGCGGCAACGGTGGCGTAGTAGCTTGCGTGTGGATTGCCAAGCAGCTGCGACTGACCTCGAAGCCACAGCTCGCGCCGGGAAAGACCGTCTGTTGAAG : GTACCAATATCAAATATAAGGAATTTCTCAATAATAGCACATATTGATCACGGGAAATCAACGTTGGCAGATAAGTTGCTGCAAATGACGGGAACCGTAGAGAGCCGAGACATGAAGGAACAGTTTCTAGATAATATGGATTTGGAGAGAGAAAGAGGCATCACTATCAAATTGCAG : GCTGCTCGAATGCGTTTCATTTATGAAAATGAGCCATATTGCCTTAATCTGATTGACACTCCAGGTCATGTAGATTTCTCGTATGAG : GTCTCTCGGTCTCTTGCTGCATGTGAAGGTGCACTACTTGTAGTTGATGCGTCCCAG : GGAGTAGAGGCGCAAACCCTGGCTAATGTGTATTTAGCATTGGAAAACAATCTTGAGATCATCCCG : GTTTTGAACAAGATTGATCTTCCAGGTGCTGATCCAGCTCGTGTTTGTCAAGAGATAGAAGAG : ATTGTTGGCCTGGATTGTAGCAATGCCATATACACCTCAGCAAAG : GAAGGAATAGGTATTAGTGAAATTCTAAACGCGATTGTTCAGAGGATTCCACCTCCACGTGCAACTGCCGAAAGGCCTCTGAGGGCTCTTATATTTGACAG : TTACTATGATC</gDNA_template>
            <first_frame> K  A  N  A  A  T  E  L  S  P  Y  D  G  G  G  N  G  G  V  V  A  C  V  W  I  A  K  Q  L  R  L  T  S  K  P  Q  L  A  P  G  K  T  V  C  *  R :   Y  Q  Y  Q  I  *  G  I  S  Q  *  *  H  I  L  I  T  G  N  Q  R  W  Q  I  S  C  C  K  *  R  E  P  *  R  A  E  T  *  R  N  S  F  *  I  I  W  I  W  R  E  K  E  A  S  L  S  N  C  R :   L  L  E  C  V  S  F  M  K  M  S  H  I  A  L  I  *  L  T  L  Q  V  M  *  I  S  R  M  R :   S  L  G  L  L  L  H  V  K  V  H  Y  L  *  L  M  R  P  R :   E  *  R  R  K  P  W  L  M  C  I  *  H  W  K  T  I  L  R  S  S  R :   F  *  T  R  L  I  F  Q  V  L  I  Q  L  V  F  V  K  R  *  K  R :   L  L  A  W  I  V  A  M  P  Y  T  P  Q  Q  R :   K  E  *  V  L  V  K  F  *  T  R  L  F  R  G  F  H  L  H  V  Q  L  P  K  G  L  *  G  L  L  Y  L  T   : V  T  M  I </first_frame>
            <second_frame>  K  Q  T  R  R  R  S  S  V  R  T  T  A  A  A  T  V  A  *  *  L  A  C  G  L  P  S  S  C  D  *  P  R  S  H  S  S  R  R  E  R  P  S  V  E   : G  T  N  I  K  Y  K  E  F  L  N  N  S  T  Y  *  S  R  E  I  N  V  G  R  *  V  A  A  N  D  G  N  R  R  E  P  R  H  E  G  T  V  S  R  *  Y  G  F  G  E  R  K  R  H  H  Y  Q  I  A   : G  C  S  N  A  F  H  L  *  K  *  A  I  L  P  *  S  D  *  H  S  R  S  C  R  F  L  V  *   : G  L  S  V  S  C  C  M  *  R  C  T  T  C  S  *  C  V  P   : G  S  R  G  A  N  P  G  *  C  V  F  S  I  G  K  Q  S  *  D  H  P   : G  F  E  Q  D  *  S  S  R  C  *  S  S  S  C  L  S  R  D  R  R   : D  C  W  P  G  L  *  Q  C  H  I  H  L  S  K   : G  R  N  R  Y  *  *  N  S  K  R  D  C  S  E  D  S  T  S  T  C  N  C  R  K  A  S  E  G  S  Y  I  *  Q  :  L  L  *   </second_frame>
            <third_frame>   S  K  R  G  D  G  A  Q  S  V  R  R  R  R  Q  R  W  R  S  S  L  R  V  D  C  Q  A  A  A  T  D  L  E  A  T  A  R  A  G  K  D  R  L  L  K  :  V  P  I  S  N  I  R  N  F  S  I  I  A  H  I  D  H  G  K  S  T  L  A  D  K  L  L  Q  M  T  G  T  V  E  S  R  D  M  K  E  Q  F  L  D  N  M  D  L  E  R  E  R  G  I  T  I  K  L  Q  :  A  A  R  M  R  F  I  Y  E  N  E  P  Y  C  L  N  L  I  D  T  P  G  H  V  D  F  S  Y  E  :  V  S  R  S  L  A  A  C  E  G  A  L  L  V  V  D  A  S  Q  :  G  V  E  A  Q  T  L  A  N  V  Y  L  A  L  E  N  N  L  E  I  I  P  :  V  L  N  K  I  D  L  P  G  A  D  P  A  R  V  C  Q  E  I  E  E  :  I  V  G  L  D  C  S  N  A  I  Y  T  S  A  K  :  E  G  I  G  I  S  E  I  L  N  A  I  V  Q  R  I  P  P  P  R  A  T  A  E  R  P  L  R  A  L  I  F  D  S :   Y  Y  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0069C22.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76348" stop="76214"/>
                    <exon start="75270" stop="75094"/>
                    <exon start="74013" stop="73927"/>
                    <exon start="72702" stop="72646"/>
                    <exon start="72471" stop="72406"/>
                    <exon start="71572" stop="71510"/>
                    <exon start="71136" stop="71092"/>
                    <exon start="70936" stop="70836"/>
                    <exon start="70546" stop="70537"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKRGDGAQSVRRRRQRWRSSLRVDCQAAATDLEATARAGKDRLLKVPISNIRNFSIIAHIDHGKSTLADKLLQMTGTVESRDMKEQFLDNMDLERERGITIKLQAARMRFIYENEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGADPARVCQEIEEIVGLDCSNAIYTSAKEGIGISEILNAIVQRIPPPRATAERPLRALIFDSYYD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="78801" PGL_stop="77964"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78801" e_stop="78544"/>
            <exon e_start="78451" e_stop="77997"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="0.880"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.880">
            <gDNA_exon_boundary e_start="78801" e_stop="78544" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="78543" i_stop="78452" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.932">
            <gDNA_exon_boundary e_start="78451" e_stop="77997" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78801" stop="78544"/>
              <exon start="78451" stop="78030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78801" stop="78544"/>
              <exon start="78451" stop="78142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78800" stop="78544"/>
              <exon start="78451" stop="77997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78800" stop="78544"/>
              <exon start="78451" stop="78176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78800" stop="78544"/>
              <exon start="78451" stop="78177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78798" stop="78544"/>
              <exon start="78451" stop="77997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78597" stop="78544"/>
              <exon start="78451" stop="77997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAAATAAACCCCCTTTCAGTTATTTTCTTTAAAGGACAAACTCTCCGTAAGTTTGCTATACCAGGTTCCACCATTTTGTATTAAAAAATTTCCCCAAAATAAAATTCTCTTTTATCCTTTTTCTGCACTTTTTATACAATTTCTTCTTCTTCCTTCAATTTCTCCACAGTTTTCTCCATAATTGTAATTTCAAACTACCAGCTTCTTCTATCACAAACGTCATTGCATTTTTTCAAACTATTTCAAAAATTTCAAG : AATTTTGGTTCAATCAATAGATGCCCAATCTCTATCGAAAAGATTCACAAGAGGTATACCATTGCATGTTGAAATTGATGTTGAACACCCATCATCTTCATTGGGTCTAACTCAGGAATTTGGGGAGATTTCAGGTTCATTGTCTAAATCTACTACCATTCAAAAGATTAAATCCAAATTCAATAATGATCCAAGTAGATATGTTGGTGGAGGTGTGAAGAATCCTGTCGATGTTGTTACTGGGTCAAGTAAGAAAAGGAAACATAAAGCTGATGTTTATACCATTCATTATGATAAAAATGAAGCTGTTGGTTCTGGATCAATCGAGCATCATAAGGTATTTGTATAATCATTGTTCACGTAAATGTTTAGATTTTATATTATGTGTTTTGTTTTTGTGTTGAATCATGTCTTATACAATTGTAATTGTATAAATGTATAATCTATATTAGCAT</gDNA_template>
            <first_frame> I  K  *  T  P  F  Q  L  F  S  L  K  D  K  L  S  V  S  L  L  Y  Q  V  P  P  F  C  I  K  K  F  P  Q  N  K  I  L  F  Y  P  F  S  A  L  F  I  Q  F  L  L  L  P  S  I  S  P  Q  F  S  P  *  L  *  F  Q  T  T  S  F  F  Y  H  K  R  H  C  I  F  S  N  Y  F  K  N  F  K  :  N  F  G  S  I  N  R  C  P  I  S  I  E  K  I  H  K  R  Y  T  I  A  C  *  N  *  C  *  T  P  I  I  F  I  G  S  N  S  G  I  W  G  D  F  R  F  I  V  *  I  Y  Y  H  S  K  D  *  I  Q  I  Q  *  *  S  K  *  I  C  W  W  R  C  E  E  S  C  R  C  C  Y  W  V  K  *  E  K  E  T  *  S  *  C  L  Y  H  S  L  *  *  K  *  S  C  W  F  W  I  N  R  A  S  *  G  I  C  I  I  I  V  H  V  N  V  *  I  L  Y  Y  V  F  C  F  C  V  E  S  C  L  I  Q  L  *  L  Y  K  C  I  I  Y  I  S   </first_frame>
            <second_frame>  S  N  K  P  P  F  S  Y  F  L  *  R  T  N  S  P  *  V  C  Y  T  R  F  H  H  F  V  L  K  N  F  P  K  I  K  F  S  F  I  L  F  L  H  F  L  Y  N  F  F  F  F  L  Q  F  L  H  S  F  L  H  N  C  N  F  K  L  P  A  S  S  I  T  N  V  I  A  F  F  Q  T  I  S  K  I  S  R :   I  L  V  Q  S  I  D  A  Q  S  L  S  K  R  F  T  R  G  I  P  L  H  V  E  I  D  V  E  H  P  S  S  S  L  G  L  T  Q  E  F  G  E  I  S  G  S  L  S  K  S  T  T  I  Q  K  I  K  S  K  F  N  N  D  P  S  R  Y  V  G  G  G  V  K  N  P  V  D  V  V  T  G  S  S  K  K  R  K  H  K  A  D  V  Y  T  I  H  Y  D  K  N  E  A  V  G  S  G  S  I  E  H  H  K  V  F  V  *  S  L  F  T  *  M  F  R  F  Y  I  M  C  F  V  F  V  L  N  H  V  L  Y  N  C  N  C  I  N  V  *  S  I  L  A  </second_frame>
            <third_frame>   Q  I  N  P  L  S  V  I  F  F  K  G  Q  T  L  R  K  F  A  I  P  G  S  T  I  L  Y  *  K  I  S  P  K  *  N  S  L  L  S  F  F  C  T  F  Y  T  I  S  S  S  S  F  N  F  S  T  V  F  S  I  I  V  I  S  N  Y  Q  L  L  L  S  Q  T  S  L  H  F  F  K  L  F  Q  K  F  Q   : E  F  W  F  N  Q  *  M  P  N  L  Y  R  K  D  S  Q  E  V  Y  H  C  M  L  K  L  M  L  N  T  H  H  L  H  W  V  *  L  R  N  L  G  R  F  Q  V  H  C  L  N  L  L  P  F  K  R  L  N  P  N  S  I  M  I  Q  V  D  M  L  V  E  V  *  R  I  L  S  M  L  L  L  G  Q  V  R  K  G  N  I  K  L  M  F  I  P  F  I  M  I  K  M  K  L  L  V  L  D  Q  S  S  I  I  R  Y  L  Y  N  H  C  S  R  K  C  L  D  F  I  L  C  V  L  F  L  C  *  I  M  S  Y  T  I  V  I  V  *  M  Y  N  L  Y  *  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0069C22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78749" stop="78544"/>
                    <exon start="78451" stop="78103"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCYTRFHHFVLKNFPKIKFSFILFLHFLYNFFFFLQFLHSFLHNCNFKLPASSITNVIAFFQTISKISRILVQSIDAQSLSKRFTRGIPLHVEIDVEHPSSSLGLTQEFGEISGSLSKSTTIQKIKSKFNNDPSRYVGGGVKNPVDVVTGSSKKRKHKADVYTIHYDKNEAVGSGSIEHHKVFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78598" e_stop="77964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="78598" e_stop="77964" e_length="635"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78598" stop="77964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356827" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCTTCTATCACAAACGTCATTGCATTTTTTCAAACTATTTCAAAAATTTCAAGGTACTATCTAAAACTCATCTCACATTATCAATTTGTTCATTTTTTTGAATTTCTTACAACTACCTTTTCACTTCACTTGTTAATTTCTTCAGAATTTTGGTTCAATCAATAGATGCCCAATCTCTATCGAAAAGATTCACAAGAGGTATACCATTGCATGTTGAAATTGATGTTGAACACCCATCATCTTCATTGGGTCTAACTCAGGAATTTGGGGAGATTTCAGGTTCATTGTCTAAATCTACTACCATTCAAAAGATTAAATCCAAATTCAATAATGATCCAAGTAGATATGTTGGTGGAGGTGTGAAGAATCCTGTCGATGTTGTTACTGGGTCAAGTAAGAAAAGGAAACATAAAGCTGATGTTTATACCATTCATTATGATAAAAATGAAGCTGTTGGTTCTGGATCAATCGAGCATCATAAGGTATTTGTATAATCATTGTTCACGTAAATGTTTAGATTTTATATTATGTGTTTTGTTTTTGTGTTGAATCATGTCTTATACAATTGTAATTGTATAAATGTATAATCTATATTAGCATATGTTTTTGTGTTTCTGTTGATTTATGCCTTAT</gDNA_template>
            <first_frame> L  L  L  S  Q  T  S  L  H  F  F  K  L  F  Q  K  F  Q  G  T  I  *  N  S  S  H  I  I  N  L  F  I  F  L  N  F  L  Q  L  P  F  H  F  T  C  *  F  L  Q  N  F  G  S  I  N  R  C  P  I  S  I  E  K  I  H  K  R  Y  T  I  A  C  *  N  *  C  *  T  P  I  I  F  I  G  S  N  S  G  I  W  G  D  F  R  F  I  V  *  I  Y  Y  H  S  K  D  *  I  Q  I  Q  *  *  S  K  *  I  C  W  W  R  C  E  E  S  C  R  C  C  Y  W  V  K  *  E  K  E  T  *  S  *  C  L  Y  H  S  L  *  *  K  *  S  C  W  F  W  I  N  R  A  S  *  G  I  C  I  I  I  V  H  V  N  V  *  I  L  Y  Y  V  F  C  F  C  V  E  S  C  L  I  Q  L  *  L  Y  K  C  I  I  Y  I  S  I  C  F  C  V  S  V  D  L  C  L   </first_frame>
            <second_frame>  F  F  Y  H  K  R  H  C  I  F  S  N  Y  F  K  N  F  K  V  L  S  K  T  H  L  T  L  S  I  C  S  F  F  *  I  S  Y  N  Y  L  F  T  S  L  V  N  F  F  R  I  L  V  Q  S  I  D  A  Q  S  L  S  K  R  F  T  R  G  I  P  L  H  V  E  I  D  V  E  H  P  S  S  S  L  G  L  T  Q  E  F  G  E  I  S  G  S  L  S  K  S  T  T  I  Q  K  I  K  S  K  F  N  N  D  P  S  R  Y  V  G  G  G  V  K  N  P  V  D  V  V  T  G  S  S  K  K  R  K  H  K  A  D  V  Y  T  I  H  Y  D  K  N  E  A  V  G  S  G  S  I  E  H  H  K  V  F  V  *  S  L  F  T  *  M  F  R  F  Y  I  M  C  F  V  F  V  L  N  H  V  L  Y  N  C  N  C  I  N  V  *  S  I  L  A  Y  V  F  V  F  L  L  I  Y  A  L  </second_frame>
            <third_frame>   S  S  I  T  N  V  I  A  F  F  Q  T  I  S  K  I  S  R  Y  Y  L  K  L  I  S  H  Y  Q  F  V  H  F  F  E  F  L  T  T  T  F  S  L  H  L  L  I  S  S  E  F  W  F  N  Q  *  M  P  N  L  Y  R  K  D  S  Q  E  V  Y  H  C  M  L  K  L  M  L  N  T  H  H  L  H  W  V  *  L  R  N  L  G  R  F  Q  V  H  C  L  N  L  L  P  F  K  R  L  N  P  N  S  I  M  I  Q  V  D  M  L  V  E  V  *  R  I  L  S  M  L  L  L  G  Q  V  R  K  G  N  I  K  L  M  F  I  P  F  I  M  I  K  M  K  L  L  V  L  D  Q  S  S  I  I  R  Y  L  Y  N  H  C  S  R  K  C  L  D  F  I  L  C  V  L  F  L  C  *  I  M  S  Y  T  I  V  I  V  *  M  Y  N  L  Y  *  H  M  F  L  C  F  C  *  F  M  P  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0069C22.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78495" stop="78103"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISYNYLFTSLVNFFRILVQSIDAQSLSKRFTRGIPLHVEIDVEHPSSSLGLTQEFGEISGSLSKSTTIQKIKSKFNNDPSRYVGGGVKNPVDVVTGSSKKRKHKADVYTIHYDKNEAVGSGSIEHHKVFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="90139" PGL_stop="89725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90139" e_stop="89725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90139" e_stop="89725" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90139" stop="89725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356160" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTTCGGGATTTTATAAGTAGAATCTTTAAAGTAGACGAAGGGTAAGGAGCATGGGAAGAGTATGTAGATAAGCATATGGAGACGGGCAAGTGAGATACAAGATGAGACTGGAATTAGTTGAATCGGTTAACGCCCTTGTTTACTGATTATATGTTGACTGGTTTTTGTGAAGATCTTGGCCATTGGTAAAGTGTGAATGAATGGTCTGATGAAGTTGTTGATGCCCAATTTTATTTTATCCCCTTTCCCTCCCTTGCTATATATGTCAAGGATGATCAAGCTAGGTAAAGTTATGTATATCATTTTTTATTTTTTTTTCTCTCTTTCACCCATCCTTTGGTCACTCTCTAGTTGAGTTGAGTGAACATGAAGATTTTGATCAAATGTACAGTAAAGGAAATCTTTTTTGTTA</gDNA_template>
            <first_frame> R  F  R  D  F  I  S  R  I  F  K  V  D  E  G  *  G  A  W  E  E  Y  V  D  K  H  M  E  T  G  K  *  D  T  R  *  D  W  N  *  L  N  R  L  T  P  L  F  T  D  Y  M  L  T  G  F  C  E  D  L  G  H  W  *  S  V  N  E  W  S  D  E  V  V  D  A  Q  F  Y  F  I  P  F  P  S  L  A  I  Y  V  K  D  D  Q  A  R  *  S  Y  V  Y  H  F  L  F  F  F  L  S  F  T  H  P  L  V  T  L  *  L  S  *  V  N  M  K  I  L  I  K  C  T  V  K  E  I  F  F  V  </first_frame>
            <second_frame>  D  F  G  I  L  *  V  E  S  L  K  *  T  K  G  K  E  H  G  K  S  M  *  I  S  I  W  R  R  A  S  E  I  Q  D  E  T  G  I  S  *  I  G  *  R  P  C  L  L  I  I  C  *  L  V  F  V  K  I  L  A  I  G  K  V  *  M  N  G  L  M  K  L  L  M  P  N  F  I  L  S  P  F  P  P  L  L  Y  M  S  R  M  I  K  L  G  K  V  M  Y  I  I  F  Y  F  F  F  S  L  S  P  I  L  W  S  L  S  S  *  V  E  *  T  *  R  F  *  S  N  V  Q  *  R  K  S  F  L  L </second_frame>
            <third_frame>   I  S  G  F  Y  K  *  N  L  *  S  R  R  R  V  R  S  M  G  R  V  C  R  *  A  Y  G  D  G  Q  V  R  Y  K  M  R  L  E  L  V  E  S  V  N  A  L  V  Y  *  L  Y  V  D  W  F  L  *  R  S  W  P  L  V  K  C  E  *  M  V  *  *  S  C  *  C  P  I  L  F  Y  P  L  S  L  P  C  Y  I  C  Q  G  *  S  S  *  V  K  L  C  I  S  F  F  I  F  F  S  L  F  H  P  S  F  G  H  S  L  V  E  L  S  E  H  E  D  F  D  Q  M  Y  S  K  G  N  L  F  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0069C22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="93248" PGL_stop="92350"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93248" e_stop="92951"/>
            <exon e_start="92846" e_stop="92682"/>
            <exon e_start="92511" e_stop="92350"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.611" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93248" e_stop="92951" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92950" i_stop="92847" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92846" e_stop="92682" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.611" acc_prob="0.973">
            <gDNA_intron_boundary i_start="92681" i_stop="92512" i_length="170"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="92511" e_stop="92350" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93248" stop="92951"/>
              <exon start="92846" stop="92682"/>
              <exon start="92511" stop="92350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344280" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATGTTAATTTACCGAGGATTTGCATATGGGAATCTGATGGTGAAGCAGGAGATATTACTTGTGACATTGTTGACAATAGGGAGGCTTCTTCTATGTTTGTTCCTAGGAATGATGATGACGAGGACGAGGATGATGATGATGATGAAGAGAGTGAGAGTTCCGAAGGAGATGAAAGTGGGGATTTTCGAAAGAGTCCTTGCCACTCTGAAGTTGTGGAAATGAAGAAGCCGGGGCAACTAATAACCAAGGGACATAAGAATTATGATTTGGTGCTTAGTCTTCAGCTAGGTATTAG : GTATTCTACTCAGAAGCACGCCTCAATTACCCGAGAACCAAAGAATGGGGATTTTGATCCTAATGAGAAGTTCTGGACAAGGTTTCCACCTGAGGGTTCCAAATCCACACCACCCCATCAGGTTGTGGACTTCAAATGGAAGGACTACTGTCCCGTGGTTTTCAA : GAATCTTAGGGAGTTATTTGGAATCGATCCAGCTGAATACATGCTGGCTATCTGTGGAAGTGATGCACTTAGGGAACTGTCTTCCCCTGGGAAAAGTGGCAGCAACTTCTATCTAACTCAAGATGACCGATTTATCATCAAAACTTTGAAAAAGTCCGAAGT</gDNA_template>
            <first_frame> G  M  L  I  Y  R  G  F  A  Y  G  N  L  M  V  K  Q  E  I  L  L  V  T  L  L  T  I  G  R  L  L  L  C  L  F  L  G  M  M  M  T  R  T  R  M  M  M  M  M  K  R  V  R  V  P  K  E  M  K  V  G  I  F  E  R  V  L  A  T  L  K  L  W  K  *  R  S  R  G  N  *  *  P  R  D  I  R  I  M  I  W  C  L  V  F  S  *  V  L   : G  I  L  L  R  S  T  P  Q  L  P  E  N  Q  R  M  G  I  L  I  L  M  R  S  S  G  Q  G  F  H  L  R  V  P  N  P  H  H  P  I  R  L  W  T  S  N  G  R  T  T  V  P  W  F  S   : R  I  L  G  S  Y  L  E  S  I  Q  L  N  T  C  W  L  S  V  E  V  M  H  L  G  N  C  L  P  L  G  K  V  A  A  T  S  I  *  L  K  M  T  D  L  S  S  K  L  *  K  S  P  K  </first_frame>
            <second_frame>  E  C  *  F  T  E  D  L  H  M  G  I  *  W  *  S  R  R  Y  Y  L  *  H  C  *  Q  *  G  G  F  F  Y  V  C  S  *  E  *  *  *  R  G  R  G  *  *  *  *  *  R  E  *  E  F  R  R  R  *  K  W  G  F  S  K  E  S  L  P  L  *  S  C  G  N  E  E  A  G  A  T  N  N  Q  G  T  *  E  L  *  F  G  A  *  S  S  A  R  Y  *  :  V  F  Y  S  E  A  R  L  N  Y  P  R  T  K  E  W  G  F  *  S  *  *  E  V  L  D  K  V  S  T  *  G  F  Q  I  H  T  T  P  S  G  C  G  L  Q  M  E  G  L  L  S  R  G  F  Q  :  E  S  *  G  V  I  W  N  R  S  S  *  I  H  A  G  Y  L  W  K  *  C  T  *  G  T  V  F  P  W  E  K  W  Q  Q  L  L  S  N  S  R  *  P  I  Y  H  Q  N  F  E  K  V  R  S </second_frame>
            <third_frame>   N  V  N  L  P  R  I  C  I  W  E  S  D  G  E  A  G  D  I  T  C  D  I  V  D  N  R  E  A  S  S  M  F  V  P  R  N  D  D  D  E  D  E  D  D  D  D  D  E  E  S  E  S  S  E  G  D  E  S  G  D  F  R  K  S  P  C  H  S  E  V  V  E  M  K  K  P  G  Q  L  I  T  K  G  H  K  N  Y  D  L  V  L  S  L  Q  L  G  I  R :   Y  S  T  Q  K  H  A  S  I  T  R  E  P  K  N  G  D  F  D  P  N  E  K  F  W  T  R  F  P  P  E  G  S  K  S  T  P  P  H  Q  V  V  D  F  K  W  K  D  Y  C  P  V  V  F  K :   N  L  R  E  L  F  G  I  D  P  A  E  Y  M  L  A  I  C  G  S  D  A  L  R  E  L  S  S  P  G  K  S  G  S  N  F  Y  L  T  Q  D  D  R  F  I  I  K  T  L  K  K  S  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0069C22.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93246" stop="92951"/>
                    <exon start="92846" stop="92682"/>
                    <exon start="92511" stop="92352"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVNLPRICIWESDGEAGDITCDIVDNREASSMFVPRNDDDEDEDDDDDEESESSEGDESGDFRKSPCHSEVVEMKKPGQLITKGHKNYDLVLSLQLGIRYSTQKHASITREPKNGDFDPNEKFWTRFPPEGSKSTPPHQVVDFKWKDYCPVVFKNLRELFGIDPAEYMLAICGSDALRELSSPGKSGSNFYLTQDDRFIIKTLKKSE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="103347" PGL_stop="106812"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103366" e_stop="103762"/>
            <exon e_start="105711" e_stop="105808"/>
            <exon e_start="105889" e_stop="105934"/>
            <exon e_start="106514" e_stop="106596"/>
            <exon e_start="106748" e_stop="106812"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.762" e_score="1.000"/>
          <exon-intron don_prob="0.041" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103366" e_stop="103762" e_length="397"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.762">
            <gDNA_intron_boundary i_start="103763" i_stop="105710" i_length="1948"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105711" e_stop="105808" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.041" acc_prob="0.998">
            <gDNA_intron_boundary i_start="105809" i_stop="105888" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105889" e_stop="105934" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="1.000">
            <gDNA_intron_boundary i_start="105935" i_stop="106513" i_length="579"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106514" e_stop="106596" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.973">
            <gDNA_intron_boundary i_start="106597" i_stop="106747" i_length="151"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106748" e_stop="106812" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103366" stop="103734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103369" stop="103762"/>
              <exon start="105711" stop="105808"/>
              <exon start="105889" stop="105917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103382" stop="103762"/>
              <exon start="105711" stop="105808"/>
              <exon start="105889" stop="105934"/>
              <exon start="106514" stop="106596"/>
              <exon start="106748" stop="106752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103386" stop="103695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103423" stop="103762"/>
              <exon start="105711" stop="105808"/>
              <exon start="105889" stop="105934"/>
              <exon start="106514" stop="106596"/>
              <exon start="106748" stop="106812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271657" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAATGGCTTCCTCCTCAGCTTCTTCTTCTTCTTCAAATCTCTCTGCAATTTTCCCAAATTCTTCATCATTCAATTCCCAAATTACCCATCTATTCCCAATCCAATCTTCTTATTTCAACAAAAATTACAGAGAAAATGCACTAAAATTTTCATCATTATCTTGCTCTGCAGCGAAACAACAAACTGGACCAGTGAAGAAACGTACATCTACCAATAATACTAAGAAGAAAAAGAAACCCATTTCCAATTTCGAAAGCGATGTTGAAGTTGAAGAAAAAGGGGTACAGTCTTCTGAGACGTACCATCCTTTGCCGCTACCTAAACCCCCAGCTGGGTTTGTTTTGGATGAGCAGGGCAGAGTTCTCATGGCTTCCAATAAGCGTATTGCTACAATC : GTTGATTCTACCAACAATTTCCCATTGGAATGTGTCATCAGGAGGGTTTTTAGAAGCACACGAGGAGATGAATGTCTATTACTTTGTCCTGTTGATAT : GCCTGTTCAGATCTTAAAGAGCACAAATGTCGAGGGGTGGTCTGCT : GTAAGCGATGAAGAAGTTGAAGCTATCCTACCCACTGCAGCCTATGCTCTAGCCAAGATACACATGCATCTGGTGTACAGTGG : ATTCTGTTACACAGCACGAGGAGGATGTTGCTACACAGAGGATGACATATTTGAATTTAGAACAG</gDNA_template>
            <first_frame> N  N  G  F  L  L  S  F  F  F  F  F  K  S  L  C  N  F  P  K  F  F  I  I  Q  F  P  N  Y  P  S  I  P  N  P  I  F  L  F  Q  Q  K  L  Q  R  K  C  T  K  I  F  I  I  I  L  L  C  S  E  T  T  N  W  T  S  E  E  T  Y  I  Y  Q  *  Y  *  E  E  K  E  T  H  F  Q  F  R  K  R  C  *  S  *  R  K  R  G  T  V  F  *  D  V  P  S  F  A  A  T  *  T  P  S  W  V  C  F  G  *  A  G  Q  S  S  H  G  F  Q  *  A  Y  C  Y  N   : R  *  F  Y  Q  Q  F  P  I  G  M  C  H  Q  E  G  F  *  K  H  T  R  R  *  M  S  I  T  L  S  C  *  Y  :  A  C  S  D  L  K  E  H  K  C  R  G  V  V  C   : C  K  R  *  R  S  *  S  Y  P  T  H  C  S  L  C  S  S  Q  D  T  H  A  S  G  V  Q  W  :  I  L  L  H  S  T  R  R  M  L  L  H  R  G  *  H  I  *  I  *  N   </first_frame>
            <second_frame>  T  M  A  S  S  S  A  S  S  S  S  S  N  L  S  A  I  F  P  N  S  S  S  F  N  S  Q  I  T  H  L  F  P  I  Q  S  S  Y  F  N  K  N  Y  R  E  N  A  L  K  F  S  S  L  S  C  S  A  A  K  Q  Q  T  G  P  V  K  K  R  T  S  T  N  N  T  K  K  K  K  K  P  I  S  N  F  E  S  D  V  E  V  E  E  K  G  V  Q  S  S  E  T  Y  H  P  L  P  L  P  K  P  P  A  G  F  V  L  D  E  Q  G  R  V  L  M  A  S  N  K  R  I  A  T  I  :  V  D  S  T  N  N  F  P  L  E  C  V  I  R  R  V  F  R  S  T  R  G  D  E  C  L  L  L  C  P  V  D  M :   P  V  Q  I  L  K  S  T  N  V  E  G  W  S  A  :  V  S  D  E  E  V  E  A  I  L  P  T  A  A  Y  A  L  A  K  I  H  M  H  L  V  Y  S  G :   F  C  Y  T  A  R  G  G  C  C  Y  T  E  D  D  I  F  E  F  R  T  </second_frame>
            <third_frame>   Q  W  L  P  P  Q  L  L  L  L  L  Q  I  S  L  Q  F  S  Q  I  L  H  H  S  I  P  K  L  P  I  Y  S  Q  S  N  L  L  I  S  T  K  I  T  E  K  M  H  *  N  F  H  H  Y  L  A  L  Q  R  N  N  K  L  D  Q  *  R  N  V  H  L  P  I  I  L  R  R  K  R  N  P  F  P  I  S  K  A  M  L  K  L  K  K  K  G  Y  S  L  L  R  R  T  I  L  C  R  Y  L  N  P  Q  L  G  L  F  W  M  S  R  A  E  F  S  W  L  P  I  S  V  L  L  Q  S :   L  I  L  P  T  I  S  H  W  N  V  S  S  G  G  F  L  E  A  H  E  E  M  N  V  Y  Y  F  V  L  L  I   : C  L  F  R  S  *  R  A  Q  M  S  R  G  G  L  L :   *  A  M  K  K  L  K  L  S  Y  P  L  Q  P  M  L  *  P  R  Y  T  C  I  W  C  T  V   : D  S  V  T  Q  H  E  E  D  V  A  T  Q  R  M  T  Y  L  N  L  E  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0069C22.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103367" stop="103762"/>
                    <exon start="105711" stop="105808"/>
                    <exon start="105889" stop="105934"/>
                    <exon start="106514" stop="106596"/>
                    <exon start="106748" stop="106811"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMASSSASSSSSNLSAIFPNSSSFNSQITHLFPIQSSYFNKNYRENALKFSSLSCSAAKQQTGPVKKRTSTNNTKKKKKPISNFESDVEVEEKGVQSSETYHPLPLPKPPAGFVLDEQGRVLMASNKRIATIVDSTNNFPLECVIRRVFRSTRGDECLLLCPVDMPVQILKSTNVEGWSAVSDEEVEAILPTAAYALAKIHMHLVYSGFCYTARGGCCYTEDDIFEFRT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="103347" e_stop="103955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="103347" e_stop="103955" e_length="609"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103347" stop="103955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103347" stop="103947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103366" stop="103734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103386" stop="103695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354694" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTCTGTTAGAGCAAAACAACAATGGCTTCCTCCTCAGCTTCTTCTTCTTCTTCAAATCTCTCTGCAATTTTCCCAAATTCTTCATCATTCAATTCCCAAATTACCCATCTATTCCCAATCCAATCTTCTTATTTCAACAAAAATTACAGAGAAAATGCACTAAAATTTTCATCATTATCTTGCTCTGCAGCGAAACAACAAACTGGACCAGTGAAGAAACGTACATCTACCAATAATACTAAGAAGAAAAAGAAACCCATTTCCAATTTCGAAAGCGATGTTGAAGTTGAAGAAAAAGGGGTACAGTCTTCTGAGACGTACCATCCTTTGCCGCTACCTAAACCCCCAGCTGGGTTTGTTTTGGATGAGCAGGGCAGAGTTCTCATGGCTTCCAATAAGCGTATTGCTACAATCGTGAGTTTTTCTTTTACTGATATAAGCTGCTAAACTTTGGTTAATAGTATGCTATATGTGGAGTTTAAGTTTTATGCACGGATTGTCTGGATACTTAGAAGCAAATTTCAGGTAAATATGTGCACTAACATGGGTCGATAGCTAAAGTGCAAGGGGTGTGGTGGAAATAGATGAGATTGCTCCATCCTTAACG</gDNA_template>
            <first_frame> I  S  V  R  A  K  Q  Q  W  L  P  P  Q  L  L  L  L  L  Q  I  S  L  Q  F  S  Q  I  L  H  H  S  I  P  K  L  P  I  Y  S  Q  S  N  L  L  I  S  T  K  I  T  E  K  M  H  *  N  F  H  H  Y  L  A  L  Q  R  N  N  K  L  D  Q  *  R  N  V  H  L  P  I  I  L  R  R  K  R  N  P  F  P  I  S  K  A  M  L  K  L  K  K  K  G  Y  S  L  L  R  R  T  I  L  C  R  Y  L  N  P  Q  L  G  L  F  W  M  S  R  A  E  F  S  W  L  P  I  S  V  L  L  Q  S  *  V  F  L  L  L  I  *  A  A  K  L  W  L  I  V  C  Y  M  W  S  L  S  F  M  H  G  L  S  G  Y  L  E  A  N  F  R  *  I  C  A  L  T  W  V  D  S  *  S  A  R  G  V  V  E  I  D  E  I  A  P  S  L  T </first_frame>
            <second_frame>  S  L  L  E  Q  N  N  N  G  F  L  L  S  F  F  F  F  F  K  S  L  C  N  F  P  K  F  F  I  I  Q  F  P  N  Y  P  S  I  P  N  P  I  F  L  F  Q  Q  K  L  Q  R  K  C  T  K  I  F  I  I  I  L  L  C  S  E  T  T  N  W  T  S  E  E  T  Y  I  Y  Q  *  Y  *  E  E  K  E  T  H  F  Q  F  R  K  R  C  *  S  *  R  K  R  G  T  V  F  *  D  V  P  S  F  A  A  T  *  T  P  S  W  V  C  F  G  *  A  G  Q  S  S  H  G  F  Q  *  A  Y  C  Y  N  R  E  F  F  F  Y  *  Y  K  L  L  N  F  G  *  *  Y  A  I  C  G  V  *  V  L  C  T  D  C  L  D  T  *  K  Q  I  S  G  K  Y  V  H  *  H  G  S  I  A  K  V  Q  G  V  W  W  K  *  M  R  L  L  H  P  *   </second_frame>
            <third_frame>   L  C  *  S  K  T  T  M  A  S  S  S  A  S  S  S  S  S  N  L  S  A  I  F  P  N  S  S  S  F  N  S  Q  I  T  H  L  F  P  I  Q  S  S  Y  F  N  K  N  Y  R  E  N  A  L  K  F  S  S  L  S  C  S  A  A  K  Q  Q  T  G  P  V  K  K  R  T  S  T  N  N  T  K  K  K  K  K  P  I  S  N  F  E  S  D  V  E  V  E  E  K  G  V  Q  S  S  E  T  Y  H  P  L  P  L  P  K  P  P  A  G  F  V  L  D  E  Q  G  R  V  L  M  A  S  N  K  R  I  A  T  I  V  S  F  S  F  T  D  I  S  C  *  T  L  V  N  S  M  L  Y  V  E  F  K  F  Y  A  R  I  V  W  I  L  R  S  K  F  Q  V  N  M  C  T  N  M  G  R  *  L  K  C  K  G  C  G  G  N  R  *  D  C  S  I  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0069C22.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103358" stop="103795"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKTTMASSSASSSSSNLSAIFPNSSSFNSQITHLFPIQSSYFNKNYRENALKFSSLSCSAAKQQTGPVKKRTSTNNTKKKKKPISNFESDVEVEEKGVQSSETYHPLPLPKPPAGFVLDEQGRVLMASNKRIATIVSFSFTDISC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 96 chains have been computed
$ 
$ memory statistics:
$ 75696 bytes spliced alignments in total
$ 36 spliced alignments have been stored
$ 2102 bytes was the average size of a spliced alignment
$ 18480 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1680 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 113 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-20 20:31:42
-->
