<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-20 11:29:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551889" ref_strand="+" ref_description="SGN-E551889 [cTSB-2-C5]">
      <seq>gttctgacaaagttgcttcagacacatcaggcttttcacctgagcatggtagagcgatcatgggtgaagaagttggttcttgattaagacgtgatataagttgtgtgtgtgaaagagccattgtatgtggattgtactctagttgctaccatcaagccaggtaacatgactagtcagacagatgggtgaaaaatgtgatactggattgggataagctgagttgaggattttcacagagtgagtctagttctaggtcatttcagaaggtacagaagagcaaatgctagggatcctggaactacaaatctgctagaggtattaatgttggattggtgaaggcctaagcccctaaagggtggctttgcttggtgattgtgactagcggtacaaaatgaaaatgatggaagaatacgccatatgatctttggattcgagttgttgcacttaaacttgtgtaaaagttgaataaatacacacatattctacatcacataatatatacaggacattgccgtgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="16797" stop="15669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16497" g_stop="15963" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E551889" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16497" e_stop="15963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGACAAAGTTGCTTCAGACACATCAGGCTTTTCACCTGAGCATGGTAGAGCGATCATGGGTGAAGAAGTTGGTTCTTGATTAAGACGTGATATAAGTTGTGTGTGTGAAAGAGCCATTGTATGTGGATTGTACTCTAGTTGCTACCATCAAGCCAGGTAACATGACAAGTCAGACAGATGGGTGAAAAATGTGATACTGGATTGGGATAAGCTGAGTTGAGGATTTTCACAGAGTGAGTCTAGTTCTAGGTCATTTCAGAAGGTACAGAAGAGCAAATGCTAGGGATCCTGGAACTACAAATCTGCTAGAGGTATTAATGTTGGATTGGTGAAGGCCTAAGCCCCTAAAGGATGGCTTTGCTTGGTCATTGTGAGTGTGACTAGCGGTACAAAATGAAAATGATGGAAGAATACGCCATATGATCTTTGGATTCGAGTTGTTGCACTTAAACTTGTGTAGAAGTTGAATAAATATACACACATATTCTACATCACATAATATATACAAGACATTGCCGTGTAGAACGTATT</genome_strand>
        <mrna_strand>GTTCTGACAAAGTTGCTTCAGACACATCAGGCTTTTCACCTGAGCATGGTAGAGCGATCATGGGTGAAGAAGTTGGTTCTTGATTAAGACGTGATATAAGTTGTGTGTGTGAAAGAGCCATTGTATGTGGATTGTACTCTAGTTGCTACCATCAAGCCAGGTAACATGACTAGTCAGACAGATGGGTGAAAAATGTGATACTGGATTGGGATAAGCTGAGTTGAGGATTTTCACAGAGTGAGTCTAGTTCTAGGTCATTTCAGAAGGTACAGAAGAGCAAATGCTAGGGATCCTGGAACTACAAATCTGCTAGAGGTATTAATGTTGGATTGGTGAAGGCCTAAGCCCCTAAAGGGTGGCTTTGCTT-G-----GTGATTGTGACTAGCGGTACAAAATGAAAATGATGGAAGAATACGCCATATGATCTTTGGATTCGAGTTGTTGCACTTAAACTTGTGTAAAAGTTGAAT-AA-ATACACACATATTCTACATCACATAATATATACAGGACATTGCCGTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552330" ref_strand="+" ref_description="SGN-E552330 [cTSB-3-J13]">
      <seq>gttctgacaaagttgcttcagacacatcaggcttttcacctgagcatggtagagcgatcatgggtgaagaagttggttcttgattaagacgtgatataagttgtgtgtgtgaaagagccattgtatgtggattgtactctagttgctaccatcaagccaggtaacatgactagtcagacagatgggtgaaaaatgtgatactggattgggataagctgagttgaggattttcacagagtgagtctagttctaggtcatttcagaaggtacagaagagcaaatgctagggatcctggaactacaaatctgctagaggtattaatgttggattggtgaaggcctaagcccctaaagggtggctttgcttggtgattgtgactagcggtacaaaatgaaaatgatggaagaatacgccatatgatctttggattcgagttgttgcacttaaacttgtgtaaaagttgaataaatacacacatattctacatcacataatatatacaggacattgccgtgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="16797" stop="15669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16497" g_stop="15963" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E552330" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16497" e_stop="15963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGACAAAGTTGCTTCAGACACATCAGGCTTTTCACCTGAGCATGGTAGAGCGATCATGGGTGAAGAAGTTGGTTCTTGATTAAGACGTGATATAAGTTGTGTGTGTGAAAGAGCCATTGTATGTGGATTGTACTCTAGTTGCTACCATCAAGCCAGGTAACATGACAAGTCAGACAGATGGGTGAAAAATGTGATACTGGATTGGGATAAGCTGAGTTGAGGATTTTCACAGAGTGAGTCTAGTTCTAGGTCATTTCAGAAGGTACAGAAGAGCAAATGCTAGGGATCCTGGAACTACAAATCTGCTAGAGGTATTAATGTTGGATTGGTGAAGGCCTAAGCCCCTAAAGGATGGCTTTGCTTGGTCATTGTGAGTGTGACTAGCGGTACAAAATGAAAATGATGGAAGAATACGCCATATGATCTTTGGATTCGAGTTGTTGCACTTAAACTTGTGTAGAAGTTGAATAAATATACACACATATTCTACATCACATAATATATACAAGACATTGCCGTGTAGAACGTATT</genome_strand>
        <mrna_strand>GTTCTGACAAAGTTGCTTCAGACACATCAGGCTTTTCACCTGAGCATGGTAGAGCGATCATGGGTGAAGAAGTTGGTTCTTGATTAAGACGTGATATAAGTTGTGTGTGTGAAAGAGCCATTGTATGTGGATTGTACTCTAGTTGCTACCATCAAGCCAGGTAACATGACTAGTCAGACAGATGGGTGAAAAATGTGATACTGGATTGGGATAAGCTGAGTTGAGGATTTTCACAGAGTGAGTCTAGTTCTAGGTCATTTCAGAAGGTACAGAAGAGCAAATGCTAGGGATCCTGGAACTACAAATCTGCTAGAGGTATTAATGTTGGATTGGTGAAGGCCTAAGCCCCTAAAGGGTGGCTTTGCTT-G-----GTGATTGTGACTAGCGGTACAAAATGAAAATGATGGAAGAATACGCCATATGATCTTTGGATTCGAGTTGTTGCACTTAAACTTGTGTAAAAGTTGAAT-AA-ATACACACATATTCTACATCACATAATATATACAGGACATTGCCGTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461336" ref_strand="+" ref_description="SGN-E461336 [cPRO-8-G9]">
      <seq>cagttccatatggacttgatttccctcaagcccattttatgaaaccctagctcccttataaacctaacaatccgttttcttcatcttctcacacactctctctaaaccctagctgtaaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggtgaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaagaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23179" stop="24383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23478" g_stop="24083" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E461336" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23478" e_stop="24083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTCCATATGGACTTTCTTTCCCTCAAGCCCATTTTACGAAACCCTAGCTCCCTTATAAGCCTAACAATCCGTCATTTTTCATCTTCACACATACACACACTCTGTAAACCCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGG</genome_strand>
        <mrna_strand>CAGTTCCATATGGACTTGATTTCCCTCAAGCCCATTTTATGAAACCCTAGCTCCCTTATAAACCTAACAATCCGT-TTTCTTCATCTTCTCAC--ACACTC--TCTCTAAACCCTAGCTGTAAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAAGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337585" ref_strand="+" ref_description="SGN-E337585 [cTOE-11-D9]">
      <seq>ttccctcaagcccattttacgaaaccctagctcccttataagcctaacaatccgtcatttttcatcttcacacatacacacactctgtaaaccctagctgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacacaggaggagaaatgggttccggtcactaagcctggaaagcttgtgaaagatggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23198" stop="24094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23498" g_stop="23794" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E337585" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23498" e_stop="23794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTCAAGCCCATTTTACGAAACCCTAGCTCCCTTATAAGCCTAACAATCCGTCATTTTTCATCTTCACACATACACACACTCTGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAA</genome_strand>
        <mrna_strand>TTCCCTCAAGCCCATTTTACGAAACCCTAGCTCCCTTATAAGCCTAACAATCCGTCATTTTTCATCTTCACACATACACACACTCTGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACACAGGAGGAGAAATGGGTTCCGGTCACTAAGCCTGGAAAGCTTGTGAAAGATGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708835" ref_strand="+" ref_description="SGN-E708835 [FA36DF03]">
      <seq>ccctattttacgaaaccctagctcccttataaacctaacaatctgtttttcatcttcgtacacactctctctaaaccctagctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23208" stop="25430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23507" g_stop="24286" g_length="780"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25130" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="828" r_length="54" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E708835" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23507" e_stop="24286"/>
          <exon e_start="25077" e_stop="25130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCATTTTACGAAACCCTAGCTCCCTTATAAGCCTAACAATCCGTCATTTTTCATCTTCACACATACACACACTCTGTAAACCCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGG</genome_strand>
        <mrna_strand>CCCTATTTTACGAAACCCTAGCTCCCTTATAAACCTAACAATC--T-GTTTTTCATCTT----CGTACACACTCTCTCTAAACCCTAGCTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719977" ref_strand="+" ref_description="SGN-E719977 [FC09BH03]">
      <seq>gaccatacacacactccgttaaccctagctgcataccttatacctacaatcatggcggcaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtatcgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23267" stop="25558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23566" g_stop="24286" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25258" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="903" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E719977" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23566" e_stop="24286"/>
          <exon e_start="25077" e_stop="25258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACATACACACACTCTGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGG-AAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTT</genome_strand>
        <mrna_strand>GAC-CATACACACACTCCGTTAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGCAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690938" ref_strand="+" ref_description="SGN-E690938 [LH_Ea04M24]">
      <seq>cgcacgacgataccctagctgtaaatctaataccttacaatcatggcggagagaggagcaggggacagaggaggctttggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggaaggggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaagatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtttgggtgttaagtgctcaaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgcccgtgtccctaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaaaacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23286" stop="25509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23576" g_stop="24286" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25209" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="844" r_length="133" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E690938" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23576" e_stop="24286"/>
          <exon e_start="25077" e_stop="25209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTCTGTAAACCCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGT</genome_strand>
        <mrna_strand>CGCACGACG-ATACCCTAGCTGTAAATCTAATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTTGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGGGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTTTGGGTGTTAAGTGCTCAAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCCCGTGTCCCTAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAAACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345968" ref_strand="+" ref_description="SGN-E345968 [cTOF-24-A3]">
      <seq>gctctgtaaaccctagctgcataccttctacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcggatccaccaaaacccttgggcacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23280" stop="25415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23579" g_stop="24286" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25115" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="747" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E345968" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23579" e_stop="24286"/>
          <exon e_start="25077" e_stop="25115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTG</genome_strand>
        <mrna_strand>GCTCTGTAAACCCTAGCTGCATACCTTCTACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGGCACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700684" ref_strand="+" ref_description="SGN-E700684 [FA13DD09]">
      <seq>ctctgtaaaccctagctgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtatcgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggtttcaccaatctccattccaagagtactttgatatcttggcaaaacctgcccaataaggttattgtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23280" stop="25510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23580" g_stop="24286" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25210" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="842" r_length="135" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E700684" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23580" e_stop="24286"/>
          <exon e_start="25077" e_stop="25210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTG-CCAATAAGGTTATTGTGTA</genome_strand>
        <mrna_strand>CTCTGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTTCACCAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCCAATAAGGTTATTGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708729" ref_strand="+" ref_description="SGN-E708729 [FA36CE01]">
      <seq>ctctgtaaaccctagctgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtatcgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattcccagagtactttgatatcttggcaaaacctgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23280" stop="25495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23580" g_stop="24286" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25195" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="826" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E708729" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23580" e_stop="24286"/>
          <exon e_start="25077" e_stop="25195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAA</genome_strand>
        <mrna_strand>CTCTGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCCAGAGTACTTTGATATCTTGGCAAAACCTGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704657" ref_strand="+" ref_description="SGN-E704657 [FA24DF05]">
      <seq>ctctgtaaaccctagctgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtatcgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctgggaagagactcggttcaccaaatctccattccagagtactttgatatcttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23280" stop="25483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23580" g_stop="24286" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25183" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="813" r_length="106" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E704657" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23580" e_stop="24286"/>
          <exon e_start="25077" e_stop="25183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGC</genome_strand>
        <mrna_strand>CTCTGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGGAAGAGACTCGGTTCACCAAATCTCCATTCC-AGAGTACTTTGATATCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706453" ref_strand="+" ref_description="SGN-E706453 [FA30AA06]">
      <seq>ctctgtaaaccctagctgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtatcgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23280" stop="25429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23580" g_stop="24286" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25129" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="760" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E706453" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23580" e_stop="24286"/>
          <exon e_start="25077" e_stop="25129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTG</genome_strand>
        <mrna_strand>CTCTGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698507" ref_strand="+" ref_description="SGN-E698507 [FA06CC12]">
      <seq>ccgttaaaccctagctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23282" stop="25443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23581" g_stop="24286" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25143" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="774" r_length="67" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E698507" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23581" e_stop="24286"/>
          <exon e_start="25077" e_stop="25143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTAAACCCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGT</genome_strand>
        <mrna_strand>CCGTTAAACCCTAGCTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348853" ref_strand="+" ref_description="SGN-E348853 [cTOF-29-F22]">
      <seq>tctgtaaaccctagctgcataccttatacctacaatcatggcggaaagatgaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtcccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcngatccaccaaaacccttggcaacttcgttaaggctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23281" stop="24589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23581" g_stop="24286" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E348853" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23581" e_stop="24286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG</genome_strand>
        <mrna_strand>TCTGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGATGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGT-CCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCNGATCCACCAAAACCCTTGGCAACTTCGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309785" ref_strand="+" ref_description="SGN-E309785 [cLEZ-10-A9]">
      <seq>tctgtaaaccctagctgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23281" stop="24418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23581" g_stop="24118" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E309785" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23581" e_stop="24118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGC</genome_strand>
        <mrna_strand>TCTGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692019" ref_strand="+" ref_description="SGN-E692019 [LH_Ea07K01]">
      <seq>cgttaaaccctagctgtataccttatacctacaatcatggcggatagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggctcgtgaaggatggcaaaatccggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaactaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctagggtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23285" stop="25432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23582" g_stop="24286" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25132" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="761" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E692019" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23582" e_stop="24286"/>
          <exon e_start="25077" e_stop="25132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAA</genome_strand>
        <mrna_strand>CGTTAAACCCTAGCTGTATACCTTATACCTACAATCATGGCGGATAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCCGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACTAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTAGGGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687804" ref_strand="+" ref_description="SGN-E687804 [T3_tus_81_B21]">
      <seq>tgtaaaccctagctgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctcccttccaagagtactttgatttcttggcaaaacctgccaataaggttattgtgtacgcccctgaagagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23283" stop="25524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23583" g_stop="24286" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25224" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="852" r_length="148" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E687804" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23583" e_stop="24286"/>
          <exon e_start="25077" e_stop="25224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGG</genome_strand>
        <mrna_strand>TGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCCTTCCAAGAGTACTTTGATTTCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCCCTGAAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310116" ref_strand="+" ref_description="SGN-E310116 [cLEZ-8-N16]">
      <seq>tgtaaaccctagctgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23283" stop="24447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23583" g_stop="24147" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E310116" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23583" e_stop="24147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTAC</genome_strand>
        <mrna_strand>TGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306426" ref_strand="+" ref_description="SGN-E306426 [cLEX-13-N12]">
      <seq>tgtaaaccctagctgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcgtccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtacgtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23283" stop="24319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23583" g_stop="24019" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E306426" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23583" e_stop="24019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACT</genome_strand>
        <mrna_strand>TGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGTCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTACGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709261" ref_strand="+" ref_description="SGN-E709261 [FA51AG06]">
      <seq>gtaaaccctagctgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtatcgaagatgtcttcacatcttctcgcggatccacccaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23284" stop="25491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23584" g_stop="24286" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25191" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="818" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E709261" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23584" e_stop="24286"/>
          <exon e_start="25077" e_stop="25191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTG</genome_strand>
        <mrna_strand>GTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCCAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699814" ref_strand="+" ref_description="SGN-E699814 [FA11BB08]">
      <seq>gtcttccctagctgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtatcgaagatgtcttcacatcttctcgcggatccaccaaaacccttgggcacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23289" stop="25420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23584" g_stop="24286" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25120" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="747" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E699814" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23584" e_stop="24286"/>
          <exon e_start="25077" e_stop="25120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCC</genome_strand>
        <mrna_strand>GTCTTCCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGGCACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316466" ref_strand="+" ref_description="SGN-E316466 [cTOA-25-A9]">
      <seq>gtaaaccctagctgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgnagatgtcttcacatcttctcgcggatccaccaaaacccttggcaactttcgttaggctaccttttgatttgtttatgaagacttacgggttcctgaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23284" stop="25419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23584" g_stop="24286" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.958" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25119" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="747" r_length="44" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E316466" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23584" e_stop="24286"/>
          <exon e_start="25077" e_stop="25119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACC-TTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCC</genome_strand>
        <mrna_strand>GTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGNAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTTCGTTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTTGATTTGTTTATGAAGACTTACGGGTTCCTGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591531" ref_strand="+" ref_description="SGN-E591531 [45246]">
      <seq>gtaaaccctagctgtacacccaatacctacaatcatgatggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggcaaacttcgttaaggctacctttgattgtttaatgaagacttacggattcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23284" stop="25415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23584" g_stop="24286" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25115" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="743" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E591531" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23584" e_stop="24286"/>
          <exon e_start="25077" e_stop="25115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGC-AACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTG</genome_strand>
        <mrna_strand>GTAAACCCTAGCTGTACACCCAATACCTACAATCATGATGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGCAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGATTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572340" ref_strand="+" ref_description="SGN-E572340 [31478]">
      <seq>ctaaacctagctgtaaactaatacttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcatgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcaggtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaaaccttggaaacttcgttaaggcaacattttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23285" stop="24587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23584" g_stop="24286" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E572340" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23584" e_stop="24286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCA-GTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG</genome_strand>
        <mrna_strand>CTAAACC-TAGCTGTAAA-CTAATACTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCATGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAAACCTTGGAAACTTCGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449046" ref_strand="+" ref_description="SGN-E449046 [cSTS-5-O7]">
      <seq>gtaaaccctagctgtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggtcgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaagatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcttttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacatactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaagtccttcagtttgctggtattgaagatgtgttcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23284" stop="24544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23584" g_stop="24244" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E449046" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23584" e_stop="24244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACA</genome_strand>
        <mrna_strand>GTAAACCCTAGCTGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCTTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACATACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAA-GTCCTTCAGTTTGCTGGTATTGAAGATGTGTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454996" ref_strand="+" ref_description="SGN-E454996 [cSTS-25-C9]">
      <seq>ctaaaccctagctgtaaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggtgaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaagtccttcagtttgctggtattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23285" stop="24531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23584" g_stop="24231" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E454996" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23584" e_stop="24231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGA</genome_strand>
        <mrna_strand>CTAAACCCTAGCTGTAAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAA-GTCCTTCAGTTTGCTGGTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451019" ref_strand="+" ref_description="SGN-E451019 [cSTS-11-A20]">
      <seq>ctaaaccctagctgtaaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggtgaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23285" stop="24498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23584" g_stop="24198" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E451019" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23584" e_stop="24198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGT</genome_strand>
        <mrna_strand>CTAAACCCTAGCTGTAAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456831" ref_strand="+" ref_description="SGN-E456831 [cSTS-30-N1]">
      <seq>gtaaaccctagctgtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtangtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23284" stop="24415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23584" g_stop="24115" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E456831" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23584" e_stop="24115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCT</genome_strand>
        <mrna_strand>GTAAACCCTAGCTGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTANGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470715" ref_strand="+" ref_description="SGN-E470715 [cSTB-20-A24]">
      <seq>gtaaaccctagctgtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23284" stop="24302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23584" g_stop="24002" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E470715" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23584" e_stop="24002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCT</genome_strand>
        <mrna_strand>GTAAACCCTAGCTGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470712" ref_strand="+" ref_description="SGN-E470712 [cSTB-20-A12]">
      <seq>gttaaccctagctgtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattctgccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgcctgacagagaaccaggttcaaggcgtttgttgttgtatgtgacgggaatggtcacgttggtttgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23284" stop="24293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23584" g_stop="23993" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E470712" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23584" e_stop="23993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTG</genome_strand>
        <mrna_strand>GTTAACCCTAGCTGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCTGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCTGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTATGTGACGGGAATGGTCACGTTGGTTTGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557855" ref_strand="+" ref_description="SGN-E557855 [16719]">
      <seq>ctaaaccctagctgtaaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23285" stop="24281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23584" g_stop="23981" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E557855" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23584" e_stop="23981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACG</genome_strand>
        <mrna_strand>CTAAACCCTAGCTGTAAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735671" ref_strand="+" ref_description="SGN-E735671 [LC02CB08]">
      <seq>cgatccctagctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaagttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatgttatgtgctctgntgttttgttctagtaggtttctttattatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23287" stop="25565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23585" g_stop="23729" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.876"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23730" i_stop="23779" i_length="50">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23780" g_stop="24286" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="653" r_length="507" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25077" g_stop="25262" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="837" r_length="184" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E735671" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23585" e_stop="23729"/>
          <exon e_start="23780" e_stop="24286"/>
          <exon e_start="25077" e_stop="25262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGAT</genome_strand>
        <mrna_strand>CGATCCCTAGCTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCC..................................................GTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAAGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587601" ref_strand="+" ref_description="SGN-E587601 [41135]">
      <seq>taaaccctagctgtaaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggtgaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaaagagactcggttcaccaaatctccattccaagagtactttgatatactgggcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23285" stop="25487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23585" g_stop="24286" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25187" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="816" r_length="113" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E587601" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23585" e_stop="24286"/>
          <exon e_start="25077" e_stop="25187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGG-AAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATAT-CTTGGCAAAA</genome_strand>
        <mrna_strand>TAAACCCTAGCTGTAAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATACTGGGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327870" ref_strand="+" ref_description="SGN-E327870 [cTOC-22-I5]">
      <seq>taaaccctagctgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtcccaagaaaggtcttcagtttgctggtatttgagatgtcttcacatcttctcgcggatccacaaaaccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23285" stop="24571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23585" g_stop="24271" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E327870" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23585" e_stop="24271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTT</genome_strand>
        <mrna_strand>TAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGT-CCCAAGAAAGGTCTTCAGTTTGCTGGTATTTGAGATGTCTTCACATCTTCTCGCGGATCCA-CAAAACCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487844" ref_strand="+" ref_description="SGN-E487844 [cSTE-26-B22]">
      <seq>taaaccctagctgtaaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggatttggtcgtggatttggaggacgtggtggtagaggtggagaccgcggcggacgaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatggtttccagtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23285" stop="24501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23585" g_stop="24201" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E487844" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23585" e_stop="24201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCC</genome_strand>
        <mrna_strand>TAAACCCTAGCTGTAAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTTGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGCGGACGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGTTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448799" ref_strand="+" ref_description="SGN-E448799 [cSTS-4-B17]">
      <seq>taaaccctagctgtaaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggtgaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23285" stop="24495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23585" g_stop="24195" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E448799" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23585" e_stop="24195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCG</genome_strand>
        <mrna_strand>TAAACCCTAGCTGTAAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260004" ref_strand="+" ref_description="SGN-E260004 [cLEG-51-N12]">
      <seq>tataccctatctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctacgaaggctcgtgaaggatggcaaaatcatgtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctctaggatgatgtgatgaaaatcatgccagttcataagcagacccgtgccggacagagaaccacgttcaaggcgtttgttgttgtatgtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaagagaagttactggggtaacgagattgggaagccacacactgttccttgcaaagttacaaggaaatgtgggtctgttactgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23285" stop="24451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23585" g_stop="24151" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E260004" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23585" e_stop="24151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAGCTGCATACCTTATACCT-ACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTG</genome_strand>
        <mrna_strand>TATACCCTATCTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTACGAAGGCTCGTGAAGGATGGCAAAATCATGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCTAGGATGATGTGATGAAAATCATGCCAGTTCATAAGCAGACCCGTGCCGGACAGAGAACCACGTTCAAGGCGTTTGTTGTTGTATGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAAGAGAAGTTACTGGGGTAACGAGATTGGGAAGCCACACACTGTTCCTTGCAAAGTTACAAGGAAATGTGGGTCTGTTACTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366775" ref_strand="+" ref_description="SGN-E366775 [cLPT-6-G23]">
      <seq>taaaccctagctgtaaatctaataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtaacaaagctaggaaggctcgtgaaagatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtttgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23285" stop="24447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23585" g_stop="24147" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E366775" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23585" e_stop="24147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTAC</genome_strand>
        <mrna_strand>TAAACCCTAGCTGTAAATCTAATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTAACAAAGCTAGGAAGGCTCGTGAAAGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTTTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341332" ref_strand="+" ref_description="SGN-E341332 [cTOE-22-H14]">
      <seq>taaaccctagctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23285" stop="24341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23585" g_stop="24041" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E341332" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23585" e_stop="24041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATAT</genome_strand>
        <mrna_strand>TAAACCCTAGCTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318851" ref_strand="+" ref_description="SGN-E318851 [cTOB-11-A9]">
      <seq>taaaccctagctgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtgcacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaacgagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcataagcatacccgtgccgggcagagaaccatgtttaaggcgtttgttggtgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23285" stop="24322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23585" g_stop="24022" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E318851" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23585" e_stop="24022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCT</genome_strand>
        <mrna_strand>TAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTGCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAACGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCATAAGCATACCCGTGCCGGGCAGAGAACCATGTTTAAGGCGTTTGTTGGTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335713" ref_strand="+" ref_description="SGN-E335713 [cTOE-8-O6]">
      <seq>taaaccctagctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23285" stop="24231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23585" g_stop="23931" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E335713" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23585" e_stop="23931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCA</genome_strand>
        <mrna_strand>TAAACCCTAGCTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740205" ref_strand="+" ref_description="SGN-E740205 [LC20CA07]">
      <seq>aatccctagctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatgttatgtgctctgttgttttgttctagtagttttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23287" stop="25632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23586" g_stop="23729" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23730" i_stop="23779" i_length="50">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23780" g_stop="24286" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="652" r_length="507" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25077" g_stop="25357" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="930" r_length="278" r_score="0.883"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E740205" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>932</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23586" e_stop="23729"/>
          <exon e_start="23780" e_stop="24286"/>
          <exon e_start="25077" e_stop="25357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-TT-CTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCG</genome_strand>
        <mrna_strand>AATCCCTAGCTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCC..................................................GTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTTTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456649" ref_strand="+" ref_description="SGN-E456649 [cSTS-30-K11]">
      <seq>aaaccctagctgtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggtcgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaagatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcttttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactgggggtaacagattggtaagccacatactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23286" stop="24473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23586" g_stop="24173" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E456649" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23586" e_stop="24173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACT-GGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTG</genome_strand>
        <mrna_strand>AAACCCTAGCTGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCTTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGGTAAC-AGATTGGTAAGCCACATACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708763" ref_strand="+" ref_description="SGN-E708763 [FA36CG11]">
      <seq>caccttagctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23288" stop="25480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23587" g_stop="24286" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25180" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="805" r_length="104" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E708763" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23587" e_stop="24286"/>
          <exon e_start="25077" e_stop="25180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTT</genome_strand>
        <mrna_strand>CACCTTAGCTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436843" ref_strand="+" ref_description="SGN-E436843 [cSTA-1-G24]">
      <seq>aaccctagctgtaaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaagccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtccgtgacggtaatggtcatgttggtttgggtgttaagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23287" stop="24302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23587" g_stop="24002" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E436843" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23587" e_stop="24002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCT</genome_strand>
        <mrna_strand>AACCCTAGCTGTAAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAAGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCCGTGACGGTAATGGTCATGTTGGTTTGGGTGTTAAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579613" ref_strand="+" ref_description="SGN-E579613 [86743]">
      <seq>aggctagctgtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23291" stop="24549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23588" g_stop="24249" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E579613" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23588" e_stop="24249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTC</genome_strand>
        <mrna_strand>AGGCTAGCTGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697848" ref_strand="+" ref_description="SGN-E697848 [FA04BH08]">
      <seq>ccctagctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttccccaaatctccattccaagagtactttgatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23289" stop="25479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23589" g_stop="24286" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25179" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="802" r_length="103" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E697848" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23589" e_stop="24286"/>
          <exon e_start="25077" e_stop="25179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCT</genome_strand>
        <mrna_strand>CCCTAGCTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCCCCAAATCTCCATTCCAAGAGTACTTTGATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708063" ref_strand="+" ref_description="SGN-E708063 [FA34DA07]">
      <seq>ccttgctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattcccagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgaaagggttgaggcttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23290" stop="25552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="24286" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25252" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="874" r_length="176" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E708063" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="24286"/>
          <exon e_start="25077" e_stop="25252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATT</genome_strand>
        <mrna_strand>CCTTGCTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCCAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAAAGGGTTGAGGCTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579109" ref_strand="+" ref_description="SGN-E579109 [86234]">
      <seq>cctagctgtaaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaaatggtcatgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcaacatttgattgtttaatgaagacctacgggttcctgaccccagattctggaaagagactcgcttcccaaatctcattccagagtcttgatatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23290" stop="25481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="24286" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25181" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="798" r_length="99" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E579109" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="24286"/>
          <exon e_start="25077" e_stop="25181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGG-GAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTG</genome_strand>
        <mrna_strand>CCTAGCTGTAAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAAATGGTCATGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGA-TTCTGGAAAGAGACTCGCTTC-CCAAATCT-CATTCC-AGAGT-C-TTGATATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587999" ref_strand="+" ref_description="SGN-E587999 [41543]">
      <seq>cctagctgtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacggattcctgaccccagacttctggaaagagactcgtttcaccaaatctcctttccaagagtactttgatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23290" stop="25479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="24286" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25179" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="800" r_length="103" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E587999" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="24286"/>
          <exon e_start="25077" e_stop="25179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCT</genome_strand>
        <mrna_strand>CCTAGCTGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGATTCCTGACCCCAGACTTCTGGAAAGAGACTCGTTTCACCAAATCTCCTTTCCAAGAGTACTTTGATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726412" ref_strand="+" ref_description="SGN-E726412 [LA11DA01]">
      <seq>cctagctgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtatcgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaagctacctttgattgtttaatgaagacttacggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23290" stop="25409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="24286" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25109" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="730" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E726412" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="24286"/>
          <exon e_start="25077" e_stop="25109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGG</genome_strand>
        <mrna_strand>CCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560390" ref_strand="+" ref_description="SGN-E560390 [20036]">
      <seq>cctactgtaaacctaataccttacaatcatggcggaggagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggtgaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacaggcaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaaccccttggaaaacttcgttaaggcgacatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23327" stop="24587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="24286" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E560390" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="24286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACC-TACAATCATGGCGGA-AAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAA-CCCTTGG-CAACTTCGTTAAG</genome_strand>
        <mrna_strand>CCTA-CTGTAAACCTAATACCTTACAATCATGGCGGAGGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGCAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCCTTGGAAAACTTCGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571778" ref_strand="+" ref_description="SGN-E571778 [30829]">
      <seq>cctactgtaaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcatgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccgagaaaccttgggaaaacttcgttaaggccaaacatttgattgtttaaatgaaggaccttacgggttcctgaaccccagatttctggaaagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23290" stop="24576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="24286" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E571778" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="24286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACC-AAAACCCTTGGCA--ACTTCGTTAAG</genome_strand>
        <mrna_strand>CCTA-CTGTAAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCATGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCGAGAAACCTTGGGAAAACTTCGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600704" ref_strand="+" ref_description="SGN-E600704 [53722]">
      <seq>cctagctgtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaaacccttggcaacttcgttaaggctaccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23290" stop="24589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="24286" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E600704" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="24286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACC-AAAACCCTTGGCAACTTCGTTAAG</genome_strand>
        <mrna_strand>CCTAGCTGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAAACCCTTGGCAACTTCGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598692" ref_strand="+" ref_description="SGN-E598692 [51664]">
      <seq>cctagctgtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaacgatgtcttcacagtcttcctcggtggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23290" stop="24562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="24258" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E598692" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="24258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAA-GATGTCTTCACA-TCTT-CTC-GCGGATC</genome_strand>
        <mrna_strand>CCTAGCTGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAACGATGTCTTCACAGTCTTCCTCGGTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568399" ref_strand="+" ref_description="SGN-E568399 [12675]">
      <seq>cctagctgtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggtcgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggaaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaagatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcttttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactggtattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgcaggatggtgcctgntcctcgtggtgctggtattgttgctgctcgtgttcccaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23290" stop="24506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="24206" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E568399" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="24206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTG-AGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGA</genome_strand>
        <mrna_strand>CCTAGCTGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGAAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCTTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGGTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGCAGGATGGTGCCTGNTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTTCCCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564747" ref_strand="+" ref_description="SGN-E564747 [2996]">
      <seq>cctagctgtacacccaatacctacaatcatggcggagagaggaggagggagagaggtggattcggtcgtggatttggaggacgtggtgggagaggtgggatgaccgccgtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggaaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaagatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaagggcttttgttgttgtnagtgacgggaatggtcacgttggtttgggtgttaagtgctcgaagaagtcgctactgctattcggtggaggaattatattggctaagctatcatgattcccgtgaggagagttactgggtaacagattggtaaccacacactgtgccttcaagttacagggaatgtgggtctgttactgtaagatgtggctgctctcgtgtgctgtattgttctgctcgtgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23290" stop="24500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="24200" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E564747" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="24200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGT-GGA-GACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGG-CGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTC-GTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCC</genome_strand>
        <mrna_strand>CCTAGCTGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGG-AGAGAGGTGGATTCGGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGGATGACCGCCGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGAAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGGCTTTTGTTGTTGTNAGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAA-GAAGTCGCTACTGCTATTCGGTGGAGGAATTATATTGGCTAAGCTATCA-TGATTCCCGTGAGGAGA-GTTACT-GGGTAAC-AGATTGGTAA-CCACACACTGTGCCTT-CAA-GTTACAGGG-AATGTGGGTCTGTTACTGT-AAGAT-GTGGCTGCT-CTCGT-GTGCT-GTATTGTT-CTGCTCGTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450744" ref_strand="+" ref_description="SGN-E450744 [cSTS-10-E16]">
      <seq>cctagctgtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggtcgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtggatctgttactgtgaggatggtgcctgctcctcgtggtgctggtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23290" stop="24483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="24184" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E450744" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="24184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATA</genome_strand>
        <mrna_strand>CCTAGCTGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGATCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600697" ref_strand="+" ref_description="SGN-E600697 [53715]">
      <seq>cctagctgtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgtttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggcaggaattatattggctaagctatcaggtgattccagtgaggagaggttactggggtaacaagcattggtaagccactacactggtgccttgcaaggttacggggcaaactgtgggtctgttacttgtgacgggatggtgcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23290" stop="24465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="24165" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E600697" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="24165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTG-TTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGG-AGGAATTATATTGGCTAAACTATCA-GTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAG-ATTGGTAAGCCAC-ACACT-GTGCCTTGCAAGGTTACAGGG-AAA-TGTGGGTCTGTTAC-TGTGA--GGATGGTGCCTGC</genome_strand>
        <mrna_strand>CCTAGCTGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGCAGGAATTATATTGGCTAAGCTATCAGGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGCATTGGTAAGCCACTACACTGGTGCCTTGCAAGGTTACGGGGCAAACTGTGGGTCTGTTACTTGTGACGGGATGGTGCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439717" ref_strand="+" ref_description="SGN-E439717 [cSTA-13-E8]">
      <seq>cctagctgtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggtcgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatagataccctcatcggtccatcactcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23290" stop="24408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="24108" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E439717" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="24108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACAC</genome_strand>
        <mrna_strand>CCTAGCTGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATAGATACCCTCATCGGTCCATCACTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570215" ref_strand="+" ref_description="SGN-E570215 [14764]">
      <seq>cctagctgtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacggttggatatggggtgttaagtggctcgaagggaagtcgactactgctattcggtggaggaattatattggctaagctatcagttgattcccagtgaaggagaggttactggggtaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23290" stop="24389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="24089" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E570215" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="24089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCAC-GTTGG-T-TTGGGTGTTAAGT-GCTCGAA-GGAAGTCG-CTACTGCTATTC-GTGGAGGAATTATATTGGCTAAACTATCAG-TGATT-CCAGTG-AGGAGAGGTTACTGGGGTAACA</genome_strand>
        <mrna_strand>CCTAGCTGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGGTTGGATATGGGGTGTTAAGTGGCTCGAAGGGAAGTCGACTACTGCTATTCGGTGGAGGAATTATATTGGCTAAGCTATCAGTTGATTCCCAGTGAAGGAGAGGTTACTGGGGTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590740" ref_strand="+" ref_description="SGN-E590740 [44342]">
      <seq>cctagctgtaaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggtgaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23290" stop="24387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="24087" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E590740" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="24087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAA</genome_strand>
        <mrna_strand>CCTAGCTGTAAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728990" ref_strand="+" ref_description="SGN-E728990 [LA19CE03]">
      <seq>cctagctgtaaanctcataccttacaancatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaatgatgtagctactgctattcgtggaggaattatattggctaagctatcactgattccagtgaggagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23290" stop="24374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="24074" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E728990" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="24074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAG</genome_strand>
        <mrna_strand>CCTAGCTGTAAANCTCATACCTTACAANCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAATGATGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCACTGATTCCAGTGAGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584716" ref_strand="+" ref_description="SGN-E584716 [10543]">
      <seq>cctagctgtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttcaagtgatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgtagttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgacaggaagtcgctactgctattcgtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23290" stop="24332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="24032" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E584716" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="24032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTG-TGAA-AGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGA-AGGAAGTCGCTACTGCTATTCGTGGAG</genome_strand>
        <mrna_strand>CCTAGCTGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTCAAGTGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTAGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGACAGGAAGTCGCTACTGCTATTCGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470873" ref_strand="+" ref_description="SGN-E470873 [cSTB-21-G15]">
      <seq>cctagctgtaaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggtgaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23290" stop="24315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="24015" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E470873" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="24015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGC</genome_strand>
        <mrna_strand>CCTAGCTGTAAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569804" ref_strand="+" ref_description="SGN-E569804 [14291]">
      <seq>cctactgtaccccaatactacaatcatggcggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggggatgaaaatcatgccgggtcagaagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23300" stop="24217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="23917" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E569804" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="23917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAG</genome_strand>
        <mrna_strand>CCTA-CTGTACCCCA-ATA-CTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGGGATGAAAATCATGCCGGGTCAGAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579197" ref_strand="+" ref_description="SGN-E579197 [86323]">
      <seq>cctagctgtacacccaatacctacaatcatggcggaagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacgggcgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatcccgctcacttgagcaaatctaccttcactcactcccaaattcaagggaggtttccaaaattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23290" stop="24152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23590" g_stop="23833" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E579197" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23590" e_stop="23833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAAT-TCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCA</genome_strand>
        <mrna_strand>CCTAGCTGTACACCCAATACCTACAATCATGGCGG-AAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGAC-GGG-CGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323305" ref_strand="+" ref_description="SGN-E323305 [cTOB-28-J24]">
      <seq>ctagctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgttttatgaagacctacgggttcctgaccccagatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23291" stop="25427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23591" g_stop="24286" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25127" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="748" r_length="51" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E323305" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23591" e_stop="24286"/>
          <exon e_start="25077" e_stop="25127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTGCATACCTTATACCT-ACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTC</genome_strand>
        <mrna_strand>CTAGCTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTTATGAAGACCTACGGGTTCCTGACCCCAGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347749" ref_strand="+" ref_description="SGN-E347749 [cTOF-26-I14]">
      <seq>ctagctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgntgatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttccctgaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23291" stop="25419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23591" g_stop="24286" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25119" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="741" r_length="44" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E347749" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23591" e_stop="24286"/>
          <exon e_start="25077" e_stop="25119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTGCATACCTTATACCT-ACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTT-CCTGACCC</genome_strand>
        <mrna_strand>CTAGCTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGNTGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCCTGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340062" ref_strand="+" ref_description="SGN-E340062 [cTOF-3-H1]">
      <seq>ctagctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgntgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23291" stop="24578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23591" g_stop="24278" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E340062" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23591" e_stop="24278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTGCATACCTTATACCT-ACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACT</genome_strand>
        <mrna_strand>CTAGCTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGNTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450583" ref_strand="+" ref_description="SGN-E450583 [cSTS-9-D12]">
      <seq>ctagctgtagacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggtcgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaagatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcttttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacatactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtncccaagaaggtccctcagtttgctggtattgaagatgtgttcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23291" stop="24544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23591" g_stop="24244" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E450583" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23591" e_stop="24244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACA</genome_strand>
        <mrna_strand>CTAGCTGTAGACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCTTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACATACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTNCCCAAGAAGGTCCCTCAGTTTGCTGGTATTGAAGATGTGTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322859" ref_strand="+" ref_description="SGN-E322859 [cTOB-30-F4]">
      <seq>ctagctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctccctcgtgtgctggtattgttgctgctcgtgtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23291" stop="24501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23591" g_stop="24201" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E322859" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23591" e_stop="24201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTGCATACCTTATACCT-ACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCT-CCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCC</genome_strand>
        <mrna_strand>CTAGCTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCCTCGT-GTGCTGGTATTGTTGCTGCTCGTGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452693" ref_strand="+" ref_description="SGN-E452693 [cSTS-17-L13]">
      <seq>ctagctgtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggtcgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaagatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcttttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacatactgtgccttgncaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23291" stop="24495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23591" g_stop="24195" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E452693" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23591" e_stop="24195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCG</genome_strand>
        <mrna_strand>CTAGCTGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCTTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACATACTGTGCCTTGNCAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313343" ref_strand="+" ref_description="SGN-E313343 [cTOA-13-O14]">
      <seq>ctagctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttgttctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23291" stop="24449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23591" g_stop="24149" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E313343" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23591" e_stop="24149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTGCATACCTTATACCT-ACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTG</genome_strand>
        <mrna_strand>CTAGCTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGTTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255663" ref_strand="+" ref_description="SGN-E255663 [cLEG-36-F12]">
      <seq>ctagctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23291" stop="24442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23591" g_stop="24142" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E255663" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23591" e_stop="24142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTGCATACCTTATACCT-ACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCT</genome_strand>
        <mrna_strand>CTAGCTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298817" ref_strand="+" ref_description="SGN-E298817 [cLET-44-O10]">
      <seq>ctagctgtaaatctcataccttacaatcatggcggagtgaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcgctcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcagggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactgtggtaacaagattgtgaagccacacactgtgccttgcaaggtcacagggaaatgtgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23291" stop="24441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23591" g_stop="24141" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E298817" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23591" e_stop="24141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTGCATACCTTATACCT-ACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTC</genome_strand>
        <mrna_strand>CTAGCTGTAAATCTCATACCTTACAATCATGGCGGAGTGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCGCTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAGGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGTGGTAACAAGATTGTGAAGCCACACACTGTGCCTTGCAAGGTCACAGGGAAATGTGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697177" ref_strand="+" ref_description="SGN-E697177 [FA01AC01]">
      <seq>ctagctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23291" stop="24409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23591" g_stop="24109" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E697177" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23591" e_stop="24109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTGCATACCTTATACCT-ACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACT</genome_strand>
        <mrna_strand>CTAGCTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGG-TTAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266385" ref_strand="+" ref_description="SGN-E266385 [cLEI-3-G12]">
      <seq>ctagctgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggtcgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcataagcatacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaatgaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggttagccacacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23291" stop="24408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23591" g_stop="24108" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E266385" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23591" e_stop="24108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACAC</genome_strand>
        <mrna_strand>CTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGTCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCATAAGCATACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAATGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTTAGCCACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338351" ref_strand="+" ref_description="SGN-E338351 [cTOE-13-H14]">
      <seq>ctagctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcttccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctatgaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23291" stop="24200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23591" g_stop="23900" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E338351" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23591" e_stop="23900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTGCATACCTTATACCT-ACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCA</genome_strand>
        <mrna_strand>CTAGCTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCTTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTATGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580401" ref_strand="+" ref_description="SGN-E580401 [5644]">
      <seq>tagctgtaaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtcatggtcatagttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaacttatattggctaagctatcagtgatccagtgaggagaggttactggggtaacaagatgggaagccacacactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23292" stop="24411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23592" g_stop="24111" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E580401" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23592" e_stop="24111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCA-CGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAA-TTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGT</genome_strand>
        <mrna_strand>TAGCTGTAAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTCATGGTCATAGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAACTTATATTGGCTAAGCTATCAGTGA-TCCAGTGAGGAGAGGTTACTGGGGTAACAAGA-TGGGAAGCCACACACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720313" ref_strand="+" ref_description="SGN-E720313 [FC10BG09]">
      <seq>agctgcataccttatacctacaatcatggcggacagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaacctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtatcgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23293" stop="25453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23593" g_stop="24286" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25153" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="771" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E720313" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23593" e_stop="24286"/>
          <exon e_start="25077" e_stop="25153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATC</genome_strand>
        <mrna_strand>AGCTGCATACCTTATACCTACAATCATGGCGGACAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAACCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592283" ref_strand="+" ref_description="SGN-E592283 [46014]">
      <seq>gctgtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatgcttctcgtggatccaccaaaacccttggcaaacttcgttaaggctacctttgattgtttactgaagcacttacggattcctgaccccagacttctggaaagagactcgtttcaccaaaatctcctttccaagagtactttgatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23294" stop="25479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23594" g_stop="24286" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25179" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="800" r_length="105" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E592283" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23594" e_stop="24286"/>
          <exon e_start="25077" e_stop="25179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACAT-CTTCTCGCGGATCCACCAAAACCCTTGGC-AACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAG-ACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACC-AAATCTCCATTCCAAGAGTACTTTGATATCT</genome_strand>
        <mrna_strand>GCTGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATGCTTCTCGTGGATCCACCAAAACCCTTGGCAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTACTGAAGCACTTACGGATTCCTGACCCCAGACTTCTGGAAAGAGACTCGTTTCACCAAAATCTCCTTTCCAAGAGTACTTTGATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700000" ref_strand="+" ref_description="SGN-E700000 [FA11DC11]">
      <seq>gctgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtatcgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23294" stop="25439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23594" g_stop="24286" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25139" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="756" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E700000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23594" e_stop="24286"/>
          <exon e_start="25077" e_stop="25139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACT</genome_strand>
        <mrna_strand>GCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446071" ref_strand="+" ref_description="SGN-E446071 [cSTA-19-J24]">
      <seq>gctgtacacggaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggtcgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcctccacgtggtgaaacagaagaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaagttcaaggcgtttgttgttgtaagtgacgggaatggtcacgttggtttgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23306" stop="24293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23594" g_stop="23993" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E446071" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23594" e_stop="23993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTG</genome_strand>
        <mrna_strand>GCTGTACACGGAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCCTCCACGTGGTGAAACAGAAGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAAGTTCAAGGCGTTTGTTGTTGTAAGTGACGGGAATGGTCACGTTGGTTTGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709946" ref_strand="+" ref_description="SGN-E709946 [FA53CH07]">
      <seq>cgttaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaatagggttattgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23299" stop="25510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23595" g_stop="24286" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25210" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="827" r_length="134" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E709946" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23595" e_stop="24286"/>
          <exon e_start="25077" e_stop="25210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATACCTTATACCT-ACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTA</genome_strand>
        <mrna_strand>CGTTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAGGGTTATTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263987" ref_strand="+" ref_description="SGN-E263987 [cLEG-64-J15]">
      <seq>ctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaagcgacatttgattgttttatgaagacctacgggttcctgaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23295" stop="25419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23595" g_stop="24286" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25119" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="736" r_length="43" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E263987" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23595" e_stop="24286"/>
          <exon e_start="25077" e_stop="25119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCC</genome_strand>
        <mrna_strand>CTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTTATGAAGACCTACGGGTTCCTGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479775" ref_strand="+" ref_description="SGN-E479775 [cSTD-11-E22]">
      <seq>cgaggcccctagctgtacacccaataccctacaatcatggcggagagatgaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagcccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23289" stop="25398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23595" g_stop="24286" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="705" r_length="693" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25098" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="727" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E479775" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23595" e_stop="24286"/>
          <exon e_start="25077" e_stop="25098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATACCTTATA-CCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGA</genome_strand>
        <mrna_strand>CTGTACACCCAATACCCTACAATCATGGCGGAGAGATGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGCCCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333780" ref_strand="+" ref_description="SGN-E333780 [cTOD-22-L11]">
      <seq>ctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23295" stop="24501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23595" g_stop="24202" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E333780" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23595" e_stop="24202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCC</genome_strand>
        <mrna_strand>CTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441454" ref_strand="+" ref_description="SGN-E441454 [cSTA-30-O2]">
      <seq>cgaggctgtaccacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggtcgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtggatctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23301" stop="24499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23595" g_stop="24199" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="611" r_length="606" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E441454" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23595" e_stop="24199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCA-TACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTC</genome_strand>
        <mrna_strand>CTGTACCACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGATCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252064" ref_strand="+" ref_description="SGN-E252064 [cLEG-8-P15]">
      <seq>ctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaagggcgtttggttttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23295" stop="24449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23595" g_stop="24149" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E252064" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23595" e_stop="24149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAA-GGCGTTT-G--TTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTG</genome_strand>
        <mrna_strand>CTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGGCGTTTGGTTTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310102" ref_strand="+" ref_description="SGN-E310102 [cLEZ-8-F18]">
      <seq>ctcgtgccgaattcggcacgagggtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23297" stop="24415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23595" g_stop="24115" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="543" r_length="522" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E310102" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23595" e_stop="24115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCT</genome_strand>
        <mrna_strand>GGGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437224" ref_strand="+" ref_description="SGN-E437224 [cSTA-3-G17]">
      <seq>ctgtaaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggatttggtcgtggatttggaggacgtggtggtagaggtggagaccgcggcggacgaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttgactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23295" stop="24374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23595" g_stop="24074" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E437224" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23595" e_stop="24074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAG</genome_strand>
        <mrna_strand>CTGTAAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTTGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGCGGACGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTGACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251497" ref_strand="+" ref_description="SGN-E251497 [cLEG-9-A3]">
      <seq>ctgtaaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23295" stop="24372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23595" g_stop="24072" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E251497" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23595" e_stop="24072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAG</genome_strand>
        <mrna_strand>CTGTAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417036" ref_strand="+" ref_description="SGN-E417036 [STM-24-M16]">
      <seq>tgtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggtcgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtggatctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgntgctgctcgtgtccccaagaagtccttcagtttgctggtttgnaagatgtcttcacatcttctcgtggatccaccaaaacccttggcaacttcgtcaaggctacctttgattgtttaatgaagacttacgggttcctgaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23296" stop="25419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23596" g_stop="24286" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="690" r_length="690" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25119" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="733" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E417036" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23596" e_stop="24286"/>
          <exon e_start="25077" e_stop="25119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCC</genome_strand>
        <mrna_strand>TGTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGATCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGNTGCTGCTCGTGTCCCCAAGAA-GTCCTTCAGTTTGCTGGTTTGNAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGCAACTTCGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452138" ref_strand="+" ref_description="SGN-E452138 [cSTS-15-D22]">
      <seq>tgtaaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggtgaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaactttcgttaggcgacatttgattgtttaatgaagacctacgggttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23296" stop="25414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23596" g_stop="24286" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.88"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25114" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="730" r_length="38" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E452138" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23596" e_stop="24286"/>
          <exon e_start="25077" e_stop="25114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCT</genome_strand>
        <mrna_strand>TGTAAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTTCGTTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579724" ref_strand="+" ref_description="SGN-E579724 [86856]">
      <seq>tgtacacccaatacctacaatcatggcggaagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggttgctggtattgttgctgctcgttgtccccaagaaggtccttcagtttttgctggtattgaagatgtcttcacatcttctcggtggaatcccaccaaaaacccttgggcaaacttcgttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23296" stop="24586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23596" g_stop="24286" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E579724" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23596" e_stop="24286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGG-TGCTGGTATAGTTGCTGCTCG-TGTCCCCAAGAAGGTCCTTCAG--TTTGCTGGTATCGAAGATGTCTTCACATCTTCTC-GCGG-AT-CCACC-AAAACCCTT-GGC-AACTTCGTTAAG</genome_strand>
        <mrna_strand>TGTACACCCAATACCTACAATCATGGCGG-AAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTTGCTGGTATTGTTGCTGCTCGTTGTCCCCAAGAAGGTCCTTCAGTTTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGGTGGAATCCCACCAAAAACCCTTGGGCAAACTTCGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577937" ref_strand="+" ref_description="SGN-E577937 [LE08BF05]">
      <seq>tgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtatcgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23296" stop="24582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23596" g_stop="24282" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E577937" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23596" e_stop="24282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGT</genome_strand>
        <mrna_strand>TGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601434" ref_strand="+" ref_description="SGN-E601434 [54472]">
      <seq>tgtacacccaatacctacaatcatggcggagagaggaagaggggagagaggtggattcggtcgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggaaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaagatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcttttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactggtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctccgtgggtgctgggtatttgttgctgccttccgtgtccccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23296" stop="24483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23596" g_stop="24170" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E601434" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E601434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23596" e_stop="24170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACT-GTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTC</genome_strand>
        <mrna_strand>TGTACACCCAATACCTACAATCATGGCGGAGAGAGGAAGAGGGGAGAGAGGTGGATTCGGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGAAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCTTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559308" ref_strand="+" ref_description="SGN-E559308 [18784]">
      <seq>tgtaaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggtgaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23296" stop="24468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23596" g_stop="24168" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E559308" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23596" e_stop="24168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCC</genome_strand>
        <mrna_strand>TGTAAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447399" ref_strand="+" ref_description="SGN-E447399 [cSTA-26-G16]">
      <seq>tgtaaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggatttggtcgtggatttggaggacgtggtggtagaggtggagaccgcggcggacgaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23296" stop="24448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23596" g_stop="24148" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E447399" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23596" e_stop="24148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACT</genome_strand>
        <mrna_strand>TGTAAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTTGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGCGGACGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314299" ref_strand="+" ref_description="SGN-E314299 [cTOA-21-C22]">
      <seq>tgcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtangtgacgggaatggtcacgttggtttgggtgttaagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23296" stop="24302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23596" g_stop="24002" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E314299" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23596" e_stop="24002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCT</genome_strand>
        <mrna_strand>TGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTANGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701475" ref_strand="+" ref_description="SGN-E701475 [FA16AD01]">
      <seq>gtatatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatctttggcaaaacctgccaataaggttattgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23297" stop="25510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23597" g_stop="24286" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25210" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="826" r_length="135" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E701475" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23597" e_stop="24286"/>
          <exon e_start="25077" e_stop="25210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATC-TTGGCAAAACCTGCCAATAAGGTTATTGTGTA</genome_strand>
        <mrna_strand>GTATATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTTGGCAAAACCTGCCAATAAGGTTATTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587761" ref_strand="+" ref_description="SGN-E587761 [41299]">
      <seq>gtacacccaatacctacaatcatggcggaccagaggaggatgggagagaggtggattcggtcgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggaaaaatccgctcacttgagctaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaagatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcttttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtgttcacatcttctcgtggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagactctacgggttcctgaccccagacttctggaaagagactcgtttcaccaaatctccattccaagagttacttgatatcttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23297" stop="25483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23597" g_stop="24286" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="691" r_length="691" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25183" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="799" r_length="108" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E587761" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23597" e_stop="24286"/>
          <exon e_start="25077" e_stop="25183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATACCTTATACCTACAATCATGGCGGA-AAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACT-TACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGC</genome_strand>
        <mrna_strand>GTACACCCAATACCTACAATCATGGCGGACCAGAGGAGGATGGGAGAGAGGTGGATTCGGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGAAAAATCCGCTCACTTGAGCTAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCTTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTGTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTCTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGTTTCACCAAATCTCCATTCCAAGAGTTACTTGATATCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481282" ref_strand="+" ref_description="SGN-E481282 [cSTD-17-L19]">
      <seq>gtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23297" stop="24497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23597" g_stop="24197" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E481282" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23597" e_stop="24197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTG</genome_strand>
        <mrna_strand>GTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729388" ref_strand="+" ref_description="SGN-E729388 [LA20DF06]">
      <seq>gtaaatctcataccttacatncatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtatgaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatggtttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttagcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggacggtgcctgctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23297" stop="24468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23597" g_stop="24168" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E729388" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23597" e_stop="24168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTA-GAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCC</genome_strand>
        <mrna_strand>GTAAATCTCATACCTTACATNCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTATGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGTTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTAGCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGACGGTGCCTGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315392" ref_strand="+" ref_description="SGN-E315392 [cTOA-22-K1]">
      <seq>gcataccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaatttcgctttcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagaccctgtgccgggcagaangaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23297" stop="24302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23597" g_stop="24002" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E315392" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23597" e_stop="24002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAA-TTCGC--TCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCC-GTGCCGGGCAG-A-GAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCT</genome_strand>
        <mrna_strand>GCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTTCGCTTTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCTGTGCCGGGCAGAANGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466327" ref_strand="+" ref_description="SGN-E466327 [cPRO-23-L8]">
      <seq>gtacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggtcgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23297" stop="24162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23597" g_stop="23862" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E466327" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23597" e_stop="23862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCT</genome_strand>
        <mrna_strand>GTACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598945" ref_strand="+" ref_description="SGN-E598945 [51921]">
      <seq>tacacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggtcgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggaaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaagatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcttttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacaggcaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaacgatgtgttcacatcttctcgtggatcaccaaaacccttggcaacttcgttaaggctacctttgattgtttactgaaagacttacgggttcctgaccccagacttctggaaaagagactcggtttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23299" stop="25446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23598" g_stop="24286" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25142" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="757" r_length="68" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E598945" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23598" e_stop="24286"/>
          <exon e_start="25077" e_stop="25142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAA-GATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATG-AAGACTTACGGGTTCCTGACCCCAGACTTCTGG-AAAGAGACTCGG</genome_strand>
        <mrna_strand>TACACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGAAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCTTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGCAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAACGATGTGTTCACATCTTCTCGTGGAT-CACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTACTGAAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAAGAGACTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448226" ref_strand="+" ref_description="SGN-E448226 [cSTS-2-G24]">
      <seq>taaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggtgaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgntgctgctcgtgttccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23299" stop="24503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23598" g_stop="24203" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E448226" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23598" e_stop="24203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCA</genome_strand>
        <mrna_strand>TAAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGNTGCTGCTCGTGTTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268335" ref_strand="+" ref_description="SGN-E268335 [cLEI-13-G21]">
      <seq>taaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggctttggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23299" stop="24441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23598" g_stop="24141" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E268335" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23598" e_stop="24141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTC</genome_strand>
        <mrna_strand>TAAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTTGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706440" ref_strand="+" ref_description="SGN-E706440 [FA29DH04]">
      <seq>atatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23299" stop="25484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23599" g_stop="24286" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25184" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="797" r_length="108" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E706440" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23599" e_stop="24286"/>
          <exon e_start="25077" e_stop="25184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCA</genome_strand>
        <mrna_strand>ATATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697522" ref_strand="+" ref_description="SGN-E697522 [FA03AH12]">
      <seq>cgatcttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgctttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtatcgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgtttaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttccccaaatctccattccaagagtactttgatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23301" stop="25479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23599" g_stop="24286" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25179" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="791" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E697522" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23599" e_stop="24286"/>
          <exon e_start="25077" e_stop="25179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCT</genome_strand>
        <mrna_strand>CGATCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCTTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCCCCAAATCTCCATTCCAAGAGTACTTTGATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478888" ref_strand="+" ref_description="SGN-E478888 [cSTD-7-D17]">
      <seq>aaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggtgaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaacgtccttcagtttgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23299" stop="24525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23599" g_stop="24225" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E478888" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23599" e_stop="24225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGG</genome_strand>
        <mrna_strand>AAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAACGTCCTTCAGTTTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247672" ref_strand="+" ref_description="SGN-E247672 [cLEF-42-I3]">
      <seq>aaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23299" stop="24517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23599" g_stop="24217" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E247672" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23599" e_stop="24217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAG</genome_strand>
        <mrna_strand>AAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558141" ref_strand="+" ref_description="SGN-E558141 [17051]">
      <seq>aaacttaatacttacaatcatggcggagagaggaggaggggagagaggaggatcgggtcgtggatttggaggacgtggtggtagaggtggtgaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23301" stop="24498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23599" g_stop="24198" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E558141" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23599" e_stop="24198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGT</genome_strand>
        <mrna_strand>AAACTTAATACTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATCGGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483985" ref_strand="+" ref_description="SGN-E483985 [cSTE-11-L21]">
      <seq>aaacctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcatgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23299" stop="24338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23599" g_stop="24038" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E483985" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23599" e_stop="24038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTA</genome_strand>
        <mrna_strand>AAACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCATGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275837" ref_strand="+" ref_description="SGN-E275837 [cLEN-18-P7]">
      <seq>aaatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23299" stop="24252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23599" g_stop="23952" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E275837" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23599" e_stop="23952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTT</genome_strand>
        <mrna_strand>AAATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449943" ref_strand="+" ref_description="SGN-E449943 [cSTS-7-P6]">
      <seq>aacctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggtgaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtccgtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccacaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgntaaggcgacatttgattgtttaatgaagacctacaggttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23301" stop="25413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23600" g_stop="24286" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25113" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="725" r_length="37" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E449943" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23600" e_stop="24286"/>
          <exon e_start="25077" e_stop="25113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCC</genome_strand>
        <mrna_strand>AACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCCGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCACAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGNTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACAGGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569492" ref_strand="+" ref_description="SGN-E569492 [13938]">
      <seq>cacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctggtcctacggtgggtgctgggtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23301" stop="24485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23600" g_stop="24170" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E569492" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23600" e_stop="24170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTC</genome_strand>
        <mrna_strand>CACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGGTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570762" ref_strand="+" ref_description="SGN-E570762 [15397]">
      <seq>cacccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcatgatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaagggaagtcgttactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccaaacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgacggatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23301" stop="24459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23600" g_stop="24159" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E570762" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23600" e_stop="24159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCA-AATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAA-GGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGA-GGATGGT</genome_strand>
        <mrna_strand>CACCCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCATGATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGGAAGTCGTTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCAAACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGACGGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335113" ref_strand="+" ref_description="SGN-E335113 [cTOE-1-O13]">
      <seq>aatctcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaagagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23301" stop="24449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23600" g_stop="24149" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E335113" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23600" e_stop="24149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTG</genome_strand>
        <mrna_strand>AATCTCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAAGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266219" ref_strand="+" ref_description="SGN-E266219 [cLEI-3-G4]">
      <seq>taccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttgggtcgtggatttggaggccgtggtggtanaagtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaagagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaagtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaagaagtccctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23300" stop="24442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23600" g_stop="24142" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E266219" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23600" e_stop="24142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCT</genome_strand>
        <mrna_strand>TACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTGGGTCGTGGATTTGGAGGCCGTGGTGGTANAAGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAAGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAAGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAAGAAGTCCCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311652" ref_strand="+" ref_description="SGN-E311652 [cLEZ-9-D11]">
      <seq>taccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23300" stop="24301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23600" g_stop="24001" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E311652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23600" e_stop="24001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGC</genome_strand>
        <mrna_strand>TACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319241" ref_strand="+" ref_description="SGN-E319241 [cTOB-16-G13]">
      <seq>taccttatacctacaatcatggcggaaagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcctccacttcgtgaaacagaggaggagaaatgggtcccggtcactaaactgggaacgcttgctaaagatggcaagattcgctcacttgagcatatttaccttctctcactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23300" stop="24131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23600" g_stop="23831" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E319241" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23600" e_stop="23831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCC</genome_strand>
        <mrna_strand>TACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCCTCCACTTCGTGAAACAGAGGAGGAGAAATGGGTCCCGGTCACTAAACTGGGAACGCTTGCTAAAGATGGCAAGATTCGCTCACTTGAGCATATTTACCTTCTCTCACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703839" ref_strand="+" ref_description="SGN-E703839 [FA22CE01]">
      <seq>cgctcataccttacaatcatggcggatagaggagcagggtgacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaataggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcgctcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttctaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctctaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggataggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaacccttggaaacttcgttaaggcgacatttgattgtttaatgtagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccatatctccattccaagagtactttgatatcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23303" stop="25482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23601" g_stop="24286" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25182" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="793" r_length="106" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E703839" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23601" e_stop="24286"/>
          <exon e_start="25077" e_stop="25182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGG-GAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGG</genome_strand>
        <mrna_strand>CGCTCATACCTTACAATCATGGCGGATAGAGGAGCAGGGTGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAATAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCGCTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCTAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCTAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGATAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACC-AAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGTAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCATATCTCCATTCCAAGAGTACTTTGATATCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569297" ref_strand="+" ref_description="SGN-E569297 [13714]">
      <seq>acctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggtgaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgttggtgctggttattgttgctgctcggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23301" stop="24497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23601" g_stop="24195" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E569297" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23601" e_stop="24195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCG-TGGTGCTGG-TATAGTTGCTGCTCG</genome_strand>
        <mrna_strand>ACCTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTTGGTGCTGGTTATTGTTGCTGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707735" ref_strand="+" ref_description="SGN-E707735 [FA33DD03]">
      <seq>cgctataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaagcagcacctgagaaggttgaggcttgattcgttagatgttatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23305" stop="25565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23602" g_stop="24286" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25270" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="878" r_length="192" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E707735" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23602" e_stop="24286"/>
          <exon e_start="25077" e_stop="25270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATACCT-ACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATG</genome_strand>
        <mrna_strand>CGCTATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAAGCAGCACCTGAGAAGGTTGAGGCTTGATTC--GTTAGATGTTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587733" ref_strand="+" ref_description="SGN-E587733 [41271]">
      <seq>ctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcatgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcaacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgtttcaccaaatctccattcaagagtactttgatatctgggcaaaaactggcaataaggtgattgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23303" stop="25510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23603" g_stop="24286" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25210" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="818" r_length="133" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E587733" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23603" e_stop="24286"/>
          <exon e_start="25077" e_stop="25210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTA</genome_strand>
        <mrna_strand>CTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCATGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGTTTCACCAAATCTCCATT-CAAGAGTACTTTGATATCTGGGCAAAAACTGGCAATAAGGTGATTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579121" ref_strand="+" ref_description="SGN-E579121 [86246]">
      <seq>ccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaangtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggcaacttcgttaacagctactttgattgtttaatgaagacttacggattcctgaccccagacttctggaaagagacctcgtttcaccaaatctcctttccaagagtactttgatatcttggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23306" stop="25486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23603" g_stop="24286" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25186" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="795" r_length="110" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E579121" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23603" e_stop="24286"/>
          <exon e_start="25077" e_stop="25186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAA-GGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGA-CTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAA</genome_strand>
        <mrna_strand>CCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAANGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGCAACTTCGTTAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTA-CTTTGATTGTTTAATGAAGACTTACGGATTCCTGACCCCAGACTTCTGGAAAGAGACCTCGTTTCACCAAATCTCCTTTCCAAGAGTACTTTGATATCTTGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733922" ref_strand="+" ref_description="SGN-E733922 [LB11BC04]">
      <seq>ctcttaccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaaccagattgggaagccacacactgtgccttgccaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccccccaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaacacctacgggttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23303" stop="25415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23603" g_stop="24286" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.92"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25115" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="724" r_length="39" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E733922" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23603" e_stop="24286"/>
          <exon e_start="25077" e_stop="25115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTG</genome_strand>
        <mrna_strand>CTCTTACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACCAGATTGGGAAGCCACACACTGTGCCTTGCCAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCCCCCAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAACACCTACGGGTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450322" ref_strand="+" ref_description="SGN-E450322 [cSTS-9-C21]">
      <seq>ccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgntgctgctcgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23306" stop="24498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23603" g_stop="24198" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E450322" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23603" e_stop="24198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGT</genome_strand>
        <mrna_strand>CCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGNTGCTGCTCGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456689" ref_strand="+" ref_description="SGN-E456689 [cSTS-30-C6]">
      <seq>ctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacctggtggtagaagtggtgaccgcggtggaagaagccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcacacccgtgccggacagagaaccacgtttaaggcgtttgttgtcgtcggtgacagtaatggtcacgttggtttgggtgttaagtgctctaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttgctgtggtaacacgattgtgaagccacacactgtgccttgcaggttacacggaaatgtgggtctgttactgtgaggatggtgcctgctcctcctggtgctggtattgttgctgctcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23303" stop="24497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23603" g_stop="24197" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E456689" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23603" e_stop="24197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTG</genome_strand>
        <mrna_strand>CTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACCTGGTGGTAGAAGTGGTGACCGCGGTGGAAGAAGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCACACCCGTGCCGGACAGAGAACCACGTTTAAGGCGTTTGTTGTCGTCGGTGACAGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCTAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTGCTGTGGTAACACGATTGTGAAGCCACACACTGTGCCTTGC-AGGTTACACGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCCTGGTGCTGGTATTGTTGCTGCTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570074" ref_strand="+" ref_description="SGN-E570074 [14601]">
      <seq>ccaatacctacaatcatggcggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtgcacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23306" stop="24485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23603" g_stop="24185" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E570074" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23603" e_stop="24185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAG</genome_strand>
        <mrna_strand>CCAATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGCACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577371" ref_strand="+" ref_description="SGN-E577371 [35137]">
      <seq>ctaataccttacaatcatggcggagagaggaggaggggagagaggaggattcggtcggtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcatgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23303" stop="24482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23603" g_stop="24182" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E577371" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23603" e_stop="24182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTC-GTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTA</genome_strand>
        <mrna_strand>CTAATACCTTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCATGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569010" ref_strand="+" ref_description="SGN-E569010 [13382]">
      <seq>ccaatacctacaatcatggcggagagaggacggaggggagttaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttctaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23306" stop="24342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23603" g_stop="24042" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E569010" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23603" e_stop="24042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATACCTACAATCATGGCGGAAAGAGGA-GGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATT</genome_strand>
        <mrna_strand>CCAATACCTACAATCATGGCGGAGAGAGGACGGAGGGGAGTTAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCTAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304797" ref_strand="+" ref_description="SGN-E304797 [cLEX-10-E16]">
      <seq>tcataccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23306" stop="24409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23604" g_stop="24109" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E304797" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23604" e_stop="24109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACT</genome_strand>
        <mrna_strand>TCATACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574576" ref_strand="+" ref_description="SGN-E574576 [34066]">
      <seq>aatacctacaatcatggcggagagaggaggaggggagagatgtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctaatgctattcgtgggaggcaattataattggctaagctatcgagtgattccagtgaaggagaggtttactggggtaacaaggattggtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23306" stop="24400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23605" g_stop="24100" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E574576" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23605" e_stop="24100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGT-GGAGG-AATTAT-ATTGGCTAAACTATC-AGTGATTCCAGTG-AGGAGAGG-TTACTGGGGTAACAA-GATTGGTAAG</genome_strand>
        <mrna_strand>AATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGATGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTAATGCTATTCGTGGGAGGCAATTATAATTGGCTAAGCTATCGAGTGATTCCAGTGAAGGAGAGGTTTACTGGGGTAACAAGGATTGGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478944" ref_strand="+" ref_description="SGN-E478944 [cSTD-7-F6]">
      <seq>aatacctacaatcatggcggagagaggaggaggggagagaggtggattcggtcgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaagatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcttttgttgttgtangtgacgggaatggtcacgttggtttgggtgttaagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23306" stop="24301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23605" g_stop="24001" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E478944" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23605" e_stop="24001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGC</genome_strand>
        <mrna_strand>AATACCTACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCTTTTGTTGTTGTANGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442726" ref_strand="+" ref_description="SGN-E442726 [cSTA-34-P5]">
      <seq>ataccttacaatcatggcggagagatggagaggggagatgaggaggattcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcatgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23306" stop="24360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23606" g_stop="24060" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E442726" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23606" e_stop="24060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGA-GAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGAT</genome_strand>
        <mrna_strand>ATACCTTACAATCATGGCGGAGAGATGGAGAGGGGAGATGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCATGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303418" ref_strand="+" ref_description="SGN-E303418 [cLEX-2-H14]">
      <seq>taccttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23307" stop="24449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23607" g_stop="24149" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E303418" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23607" e_stop="24149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTG</genome_strand>
        <mrna_strand>TACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728653" ref_strand="+" ref_description="SGN-E728653 [LA18CA11]">
      <seq>accttacaatcatggcggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23308" stop="24492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23608" g_stop="24192" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E728653" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23608" e_stop="24192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACC-TACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGC</genome_strand>
        <mrna_strand>ACCTTACAATCATGGCGGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439785" ref_strand="+" ref_description="SGN-E439785 [cSTA-13-F5]">
      <seq>ctacaatcatggcggagagaggaggatgggaganaggtggattcngtcgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23310" stop="24372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23610" g_stop="24072" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E439785" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23610" e_stop="24072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAG</genome_strand>
        <mrna_strand>CTACAATCATGGCGGAGAGAGGAGGATGGGAGANAGGTGGATTCNGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277710" ref_strand="+" ref_description="SGN-E277710 [cLEL-5-O3](-)">
      <seq>ctctgtccggcacgggtctgcttctgaactggcatgattttcatcacctcatcctgagagatggtccgataagagtatcaatgatttgaaactccttgattgggagtgagtgaaggtagatttgctcaagtgacctgattttgccatccttcacgagccttcctagctttgtcactggaacccatttctcctcctctgtttcacggcgtggacgacggccgccacggcctcttccaccgcggtctccacctctaccaccacgtcctccaaatccacgaccgaagcctcctctgtcccctgctcctctctccgccatgattgtaaggtatgagatttacctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="24234" stop="23297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23934" g_stop="23610" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E277710" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23934" e_stop="23610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCCCGGCACGGGTCTGCTTCTGAACCGGCATGATTTTCATCACCTCATCCTTGAGAGATGGACCGATGAGGGTATCTATGATTTGGAACTCCTTGATTGGGAGTGAGTGAAGGTAAATTTGCTCAAGTGAGCGAATTTTGCCATCTTTCACAAGCCTTCCTAGCTTAGTGACCGGAACCCATTTCTCCTCCTCTGTTTCACGACGTGGACGACGGCCGCCACGGCCCCGTCCACCGCGGTCTCCACCTCTACCACCACGGCCTCCAAATCCACGACCGAACCCACCTCTCTCCCCTCCTCCTCTTTCCGCCATGATTGTAG</genome_strand>
        <mrna_strand>CTCTGTCCGGCACGGGTCTGCTTCTGAACTGGCATGATTTTCATCACCTCATCC-TGAGAGATGGTCCGATAAGAGTATCAATGATTTGAAACTCCTTGATTGGGAGTGAGTGAAGGTAGATTTGCTCAAGTGACCTGATTTTGCCATCCTTCACGAGCCTTCCTAGCTTTGTCACTGGAACCCATTTCTCCTCCTCTGTTTCACGGCGTGGACGACGGCCGCCACGGCCTCTTCCACCGCGGTCTCCACCTCTACCACCACGTCCTCCAAATCCACGACCGAAGCCTCCTCTGTCCCCTGCTCCTCTCTCCGCCATGATTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293453" ref_strand="+" ref_description="SGN-E293453 [cLET-15-H23](-)">
      <seq>gtatcaatgatttgaaactccttgattgggagtgagtgaaggtagatttgctcaagtgacctgattttgccatccttcacgagccttcctagctttgtcactggaacccatttctcttcctctgtttcacggcgtggacgacggccgccacggcttcttccaccgcggtctccacttctaccaccacgtcctccaaatccacgaccgaagcctcttctgtcccctgctcctctctccgccatgattgtaaggtatgagatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="24159" stop="23297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23859" g_stop="23610" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E293453" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23859" e_stop="23610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCTATGATTTGGAACTCCTTGATTGGGAGTGAGTGAAGGTAAATTTGCTCAAGTGAGCGAATTTTGCCATCTTTCACAAGCCTTCCTAGCTTAGTGACCGGAACCCATTTCTCCTCCTCTGTTTCACGACGTGGACGACGGCCGCCACGGCCCCGTCCACCGCGGTCTCCACCTCTACCACCACGGCCTCCAAATCCACGACCGAACCCACCTCTCTCCCCTCCTCCTCTTTCCGCCATGATTGTAG</genome_strand>
        <mrna_strand>GTATCAATGATTTGAAACTCCTTGATTGGGAGTGAGTGAAGGTAGATTTGCTCAAGTGACCTGATTTTGCCATCCTTCACGAGCCTTCCTAGCTTTGTCACTGGAACCCATTTCTCTTCCTCTGTTTCACGGCGTGGACGACGGCCGCCACGGCTTCTTCCACCGCGGTCTCCACTTCTACCACCACGTCCTCCAAATCCACGACCGAAGCCTCTTCTGTCCCCTGCTCCTCTCTCCGCCATGATTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561942" ref_strand="+" ref_description="SGN-E561942 [20534]">
      <seq>tgcaatccatggcggagagaggaggaggggagagaggaggattcggtcgtggatttggaggacgtggtggtagaggtggtgaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctagctatcagtgattcagtgaggagaggtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23311" stop="24347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23611" g_stop="24075" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E561942" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23611" e_stop="24075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAT-CATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGG</genome_strand>
        <mrna_strand>TGCAATCCATGGCGGAGAGAGGAGGAGGGGAGAGAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCT-AGCTATCAGTGATT-CAGTGAGGAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568301" ref_strand="+" ref_description="SGN-E568301 [12562]">
      <seq>acaatcatggcggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgctgtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgtcgtcgtaggtgacgggaatggtcaccgtagggtttgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23312" stop="24293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23612" g_stop="23993" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E568301" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23612" e_stop="23993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCA-CGT-TGGTTTGGGTG</genome_strand>
        <mrna_strand>ACAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCTGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTCGTCGTAGGTGACGGGAATGGTCACCGTAGGGTTTGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468324" ref_strand="+" ref_description="SGN-E468324 [cSTB-3-E18]">
      <seq>caatcatggcggagagaggaggaggggagagaggacgattcggtcgtggatttggaggacgtggtggtagaggtggtgaccgcagtggaagatgccgtggcggccgtcttccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcatacccctgccggacagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23313" stop="24234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23613" g_stop="23934" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E468324" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23613" e_stop="23934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAG</genome_strand>
        <mrna_strand>CAATCATGGCGGAGAGAGGAGGAGGGGAGAGAGGACGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCAGTGGAAGATGCCGTGGCGGCCGTCTTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCATACCCCTGCCGGACAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579992" ref_strand="+" ref_description="SGN-E579992 [87127]">
      <seq>catggcggaagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagagagagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23317" stop="24531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23617" g_stop="24231" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E579992" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23617" e_stop="24231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGA</genome_strand>
        <mrna_strand>CATGGCGG-AAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGA-GA-GAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579663" ref_strand="+" ref_description="SGN-E579663 [86794]">
      <seq>gcggagagaggaggaggggagagaggtggattcggtcgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggaaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaagatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcttttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtgttcacatcttctcgtggatccaccaaaacccttggcaacttcgttaaggctaactttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23321" stop="24589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23621" g_stop="24286" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E579663" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23621" e_stop="24286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG</genome_strand>
        <mrna_strand>GCGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGAAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCTTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTGTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGCAACTTCGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343452" ref_strand="+" ref_description="SGN-E343452 [cTOF-19-N9]">
      <seq>gagagagaggaggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgcttgtatagttgctgctcgtgtccccaagaaggtccttcagtttgcttgtattgaagatgtcttcacatcttctcgcggatccaccaaaaccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23324" stop="24571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23622" g_stop="24271" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E343452" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23622" e_stop="24271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTT</genome_strand>
        <mrna_strand>GAGAGAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTTGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTTGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599581" ref_strand="+" ref_description="SGN-E599581 [52573]">
      <seq>cggagagaggaggaggggagagaggtggattcggccgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23322" stop="24312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23622" g_stop="24012" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E599581" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23622" e_stop="24012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGT</genome_strand>
        <mrna_strand>CGGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589985" ref_strand="+" ref_description="SGN-E589985 [43571]">
      <seq>ggagagaggaggaggggagagaggtggattcggtcgtggatttggaggacgtggtgggagaggtggagaccgcggtggacggggccgctggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggaaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaagatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcttttgttgttgtaggtggacgggaatggtcacgttggtttgggtgttaagtgctccaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgagagatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23323" stop="24499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23623" g_stop="24199" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E589985" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23623" e_stop="24199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCG-TGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGT-GACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAG-GATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTC</genome_strand>
        <mrna_strand>GGAGAGAGGAGGAGGGGAGAGAGGTGGATTCGGTCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCGGTGGACGGGGCCGCTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGAAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCTTTTGTTGTTGTAGGTGGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCCAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGAGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320855" ref_strand="+" ref_description="SGN-E320855 [cTOB-27-N1]">
      <seq>ggagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtangtgacggtaatggccacgttggtctgggtgttaagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23323" stop="24302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23623" g_stop="24002" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E320855" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23623" e_stop="24002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCT</genome_strand>
        <mrna_strand>GGAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTANGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703101" ref_strand="+" ref_description="SGN-E703101 [FA20CC05]">
      <seq>gagagaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatgttatgtgctctgntgtttttgtctagtagttttctttattatgaaatgttagtattctaaattttgacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23324" stop="25632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23624" g_stop="24286" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25262" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="847" r_length="184" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E703101" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23624" e_stop="24286"/>
          <exon e_start="25077" e_stop="25262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGAT</genome_strand>
        <mrna_strand>GAGAGAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706023" ref_strand="+" ref_description="SGN-E706023 [FA28DB10]">
      <seq>gaggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatgttatgtgctctgttggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23328" stop="25565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23628" g_stop="24286" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25262" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="843" r_length="184" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E706023" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23628" e_stop="24286"/>
          <exon e_start="25077" e_stop="25262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGAT</genome_strand>
        <mrna_strand>GAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705842" ref_strand="+" ref_description="SGN-E705842 [FA28BB11]">
      <seq>caggagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtacgtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaacaacgttcttcagtttgctggtattgaagatgtcttcccatccttctcgtggatccaccaaaaccccttggaaacttcgttacggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23329" stop="25430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23628" g_stop="24286" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.83"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25130" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="715" r_length="54" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E705842" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23628" e_stop="24286"/>
          <exon e_start="25077" e_stop="25130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACAT-CTTCTCGCGGATCCACCAAAA-CCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGG</genome_strand>
        <mrna_strand>CAGGAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTACGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAACAACGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCCCATCCTTCTCGTGGATCCACCAAAACCCCTTGGAAACTTCGTTACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304386" ref_strand="+" ref_description="SGN-E304386 [cLEX-12-N6]">
      <seq>aggagcaggggacataggaggcttcggtcgtggatttggaggacatggtggtagaggtggagaccgcggtggaagaggccttggcggccgtcttccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcataagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23329" stop="24445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23629" g_stop="24145" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E304386" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23629" e_stop="24145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTT</genome_strand>
        <mrna_strand>AGGAGCAGGGGACATAGGAGGCTTCGGTCGTGGATTTGGAGGACATGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCTTGGCGGCCGTCTTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCATAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567615" ref_strand="+" ref_description="SGN-E567615 [11767]">
      <seq>gaggaggggagagaggtggattccgccgtggatttggaggacgtggtgggagaggtggagaccgccgtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccgggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaagggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagcattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23331" stop="24495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23631" g_stop="24195" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E567615" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23631" e_stop="24195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCC-GGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAA-GGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAG-ATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCG</genome_strand>
        <mrna_strand>GAGGAGGGGAGAGAGGTGGATTCCGCCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCCGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGCATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267943" ref_strand="+" ref_description="SGN-E267943 [cLEI-12-N2]">
      <seq>aagcaggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23332" stop="24451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23631" g_stop="24151" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E267943" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23631" e_stop="24151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTG</genome_strand>
        <mrna_strand>AAGCAGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345909" ref_strand="+" ref_description="SGN-E345909 [cTOF-24-F5]">
      <seq>ggaggggagagaggtgggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaagtccttcagtttgctggtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23333" stop="24530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23633" g_stop="24230" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E345909" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23633" e_stop="24230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCG</genome_strand>
        <mrna_strand>GGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAA-GTCCTTCAGTTTGCTGGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700642" ref_strand="+" ref_description="SGN-E700642 [FA13CH09]">
      <seq>ggaggggagagaggagggttcggtcgtggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23333" stop="24501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23633" g_stop="24201" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E700642" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23633" e_stop="24201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCC</genome_strand>
        <mrna_strand>GGAGGGGAGAGAGGAGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719427" ref_strand="+" ref_description="SGN-E719427 [FC07DD04]">
      <seq>aggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23335" stop="25454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23635" g_stop="24286" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25154" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="730" r_length="78" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E719427" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23635" e_stop="24286"/>
          <exon e_start="25077" e_stop="25154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCT</genome_strand>
        <mrna_strand>AGGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569860" ref_strand="+" ref_description="SGN-E569860 [14354]">
      <seq>aggggagagaggtggattcgccgtggatttggaggacgtggtgggagaggtggagaccgcngtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccgggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagcagaaccaggttcaaggcgtttgttgttgtangtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtgggaggaattatattggctaagctatcagtgattccaggtgaggagaggttactggggtaacaagattggtaagccacacactgtggccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23335" stop="24488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23635" g_stop="24188" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E569860" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23635" e_stop="24188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCC-GGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAG-AGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGT-GGAGGAATTATATTGGCTAAACTATCAGTGATTCCA-GTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGT-GCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTG</genome_strand>
        <mrna_strand>AGGGGAGAGAGGTGGATTCG-CCGTGGATTTGGAGGACGTGGTGGGAGAGGTGGAGACCGCNGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGCAGAACCAGGTTCAAGGCGTTTGTTGTTGTANGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701013" ref_strand="+" ref_description="SGN-E701013 [FA14DB08]">
      <seq>ggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatngtatgtgctctgttgttttgttctagtagttttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23336" stop="25604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23636" g_stop="24286" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25305" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="873" r_length="222" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E701013" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23636" e_stop="24286"/>
          <exon e_start="25077" e_stop="25305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTC</genome_strand>
        <mrna_strand>GGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGAT-NG-TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709010" ref_strand="+" ref_description="SGN-E709010 [FA42BF10]">
      <seq>ggggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaagatggtgcctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23336" stop="24467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23636" g_stop="24167" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E709010" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23636" e_stop="24167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTC</genome_strand>
        <mrna_strand>GGGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAAGATGGTGCCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704735" ref_strand="+" ref_description="SGN-E704735 [FA25AE01]">
      <seq>gggacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23337" stop="24558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23637" g_stop="24258" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E704735" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23637" e_stop="24258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATC</genome_strand>
        <mrna_strand>GGGACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710423" ref_strand="+" ref_description="SGN-E710423 [FA55BE08]">
      <seq>ggattgaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataagggtattgtctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23338" stop="25511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23638" g_stop="24286" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25211" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="784" r_length="135" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E710423" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23638" e_stop="24286"/>
          <exon e_start="25077" e_stop="25211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTAC</genome_strand>
        <mrna_strand>GGATTGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGGTATTGTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265199" ref_strand="+" ref_description="SGN-E265199 [cLEI-2-J3]">
      <seq>gacagaggaggcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctgtctaggatgaggtgatgataatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtatgtgacggttatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactgtggtaacaagattgggaagccacacactgtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23339" stop="24414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23639" g_stop="24114" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E265199" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23639" e_stop="24114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCC</genome_strand>
        <mrna_strand>GACAGAGGAGGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTGTCTAGGATGAGGTGATGATAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTATGTGACGGTTATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGTGGTAACAAGATTGGGAAGCCACACACTGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566699" ref_strand="+" ref_description="SGN-E566699 [5138]">
      <seq>gaggaggattcggtcgtggatttggaggacgtggtggtagcaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcatgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacaggcaaatgtgggtctgttactgtgaggatggtgcctggctcctcggtggtgctggtattgttgctgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23343" stop="24495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23643" g_stop="24195" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E566699" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E566699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23643" e_stop="24195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAG-AGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCT-GCTCCTC-GTGGTGCTGGTATAGTTGCTGCTCG</genome_strand>
        <mrna_strand>GAGGAGGATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGCAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCATGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGCAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGGCTCCTCGGTGGTGCTGGTATTGTTGCTGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697351" ref_strand="+" ref_description="SGN-E697351 [FA02CA05]">
      <seq>cccttgcttcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcctggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgccttcccatcttctcgtggatccaccaaaaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23347" stop="24570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23644" g_stop="24270" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E697351" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23644" e_stop="24270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCT</genome_strand>
        <mrna_strand>CCCTTGCTTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCCTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGCCTTCCCATCTTCTCGTGGATCCACCAAAACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248503" ref_strand="+" ref_description="SGN-E248503 [cLEF-59-B13]">
      <seq>attcggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcatgttggtttgggtgttaagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23351" stop="24301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23650" g_stop="24001" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E248503" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23650" e_stop="24001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGC</genome_strand>
        <mrna_strand>ATTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCATGTTGGTTTGGGTGTTAAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483047" ref_strand="+" ref_description="SGN-E483047 [cSTE-7-D14]">
      <seq>tttggtcgtggatttggaggaacgtggtggtagaggtggagaccgcggcggacgaaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaaaaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23350" stop="25398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23651" g_stop="24286" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25098" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="660" r_length="22" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E483047" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23651" e_stop="24286"/>
          <exon e_start="25077" e_stop="25098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTCGTGGATTTGGAGG-CCGTGGTGGTAGAGGTGGAGACCGCGGTGGACG-GGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGA</genome_strand>
        <mrna_strand>TTTGGTCGTGGATTTGGAGGAACGTGGTGGTAGAGGTGGAGACCGCGGCGGACGAAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAAAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453572" ref_strand="+" ref_description="SGN-E453572 [cSTS-20-O10]">
      <seq>ttcggtcgtggatttggaggacgtggtggtagaggtggtgaccgcggtggaagaagccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtcccaagaaggtccttcagtttgctggtattggaagatgtcttcacatttctcgtggatccaccaaaacccttggaaacttcgttaagcgacatttgattgtttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23351" stop="24586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23651" g_stop="24286" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E453572" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23651" e_stop="24286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTA-TCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG</genome_strand>
        <mrna_strand>TTCGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAAGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGT-CCCAAGAAGGTCCTTCAGTTTGCTGGTATTGGAAGATGTCTTCACAT-TTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599745" ref_strand="+" ref_description="SGN-E599745 [52739]">
      <seq>cggtcgtggatttggaggacgtggtggtagaggtggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcatgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcaacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23353" stop="25458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23653" g_stop="24286" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25158" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="716" r_length="82" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E599745" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23653" e_stop="24286"/>
          <exon e_start="25077" e_stop="25158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCAT</genome_strand>
        <mrna_strand>CGGTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCATGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406219" ref_strand="+" ref_description="SGN-E406219 [PPI-3-I9]">
      <seq>cggtcgtggacttggaggacgtggtggtagaggtggtgaccgcggtggaagaggccgtggcggccgtcgtccaccccgtgaaacagaagaggaaaaatgggttccggtgacaaaactaggaaggctcgtgaaagatggaaaaatcaagtcacttgagccaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtcccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23353" stop="24503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23653" g_stop="24203" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E406219" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23653" e_stop="24203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAG-CAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCA</genome_strand>
        <mrna_strand>CGGTCGTGGACTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACCCCGTGAAACAGAAGAGGAAAAATGGGTTCCGGTGACAAAACTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564442" ref_strand="+" ref_description="SGN-E564442 [2691]">
      <seq>gtcgtggatttggagacgtggttgggagaggtggaaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggaaaaatccgctcacttgagcaaatctaccttcacgtcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaagatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcttttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacacgggaaatgtgggtctgttaactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctggctcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23355" stop="24497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23655" g_stop="24197" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E564442" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23655" e_stop="24197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCAC-TCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACA-GGGAAATGTGGGTCTGTT-ACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCT-GCTCGTG</genome_strand>
        <mrna_strand>GTCGTGGATTTGGAGACGTGGTTGGGAGAGGTGGA-ACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGAAAAATCCGCTCACTTGAGCAAATCTACCTTCACGTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCTTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACACGGGAAATGTGGGTCTGTTAACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGGCTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401714" ref_strand="+" ref_description="SGN-E401714 [PPC-5-G21]">
      <seq>gtcgtggatttggaggacgtggtggtagaggtggtgaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggaaaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaaagcacacactgtgccttgaaaggttacagggaaatgtgggtctgttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23355" stop="24449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23655" g_stop="24149" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E401714" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23655" e_stop="24149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTG</genome_strand>
        <mrna_strand>GTCGTGGATTTGGAGGACGTGGTGGTAGAGGTGGTGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAAAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAAGCACACACTGTGCCTTGAAAGGTTACAGGGAAATGTGGGTCTGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699531" ref_strand="+" ref_description="SGN-E699531 [FA10BF12]">
      <seq>cggtatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtatcgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23360" stop="25497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23657" g_stop="24286" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25197" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="750" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E699531" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23657" e_stop="24286"/>
          <exon e_start="25077" e_stop="25197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATA</genome_strand>
        <mrna_strand>CG-GTATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719841" ref_strand="+" ref_description="SGN-E719841 [FC09AB05]">
      <seq>aggatttggaggccgtggtggtagaggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcaaacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtatcgaaaatgtcttcacatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23360" stop="24548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23659" g_stop="24248" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E719841" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23659" e_stop="24248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTT</genome_strand>
        <mrna_strand>AGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAAACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAAATGTCTTCACATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710358" ref_strand="+" ref_description="SGN-E710358 [FA55AG05]">
      <seq>cctataggtggagaccgcggtggacggggccgtggcggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcactaagctaggaaggcttgtgaaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtatcgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgcccctgaagaggcaccacctgagagggttgaggcttgattcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23380" stop="25556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23678" g_stop="24286" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25256" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="789" r_length="180" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E710358" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23678" e_stop="24286"/>
          <exon e_start="25077" e_stop="25256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATT</genome_strand>
        <mrna_strand>CCTATAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCCCTGAAGAGGCACCACCTGAGAGGGTTGAGGCTTGATTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604693" ref_strand="+" ref_description="SGN-E604693 [74831]">
      <seq>tggagaccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaacccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcatgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcaggtttgctggtattgaacgatgtcttcacatcttctcgtggatccaccaaaaagcccttggaaactttcgttaaggcaacatttgattgtttaatgaagacctacgggttcctgaacccagatttctgcacagaagactcgcttcaccaaatctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23386" stop="25456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23686" g_stop="24286" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.83"/>
            <acceptor a_prob="0.958" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25156" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="688" r_length="81" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E604693" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23686" e_stop="24286"/>
          <exon e_start="25077" e_stop="25156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAA-CCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCA-GTTTGCTGGTATCGAA-GATGTCTTCACATCTTCTCGCGGATCCACC-AAAA-CCCTTGGCAAC-TTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAG-AGACTCGGTTCACCAAATCTCC</genome_strand>
        <mrna_strand>TGGAGACCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCATGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGGTTTGCTGGTATTGAACGATGTCTTCACATCTTCTCGTGGATCCACCAAAAAGCCCTTGGAAACTTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGAACCCAGATTTCTGCACAGAAGACTCGCTTCACCAAATCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400669" ref_strand="+" ref_description="SGN-E400669 [PPC-1-D14]">
      <seq>ggagaccgcggtggacggggccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtggatctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23387" stop="24496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23687" g_stop="24196" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E400669" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23687" e_stop="24196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGT</genome_strand>
        <mrna_strand>GGAGACCGCGGTGGACGGGGCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGATCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710954" ref_strand="+" ref_description="SGN-E710954 [FA57CA10]">
      <seq>ccgcggtggaagaggccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgntagatgttatgtgctctgttgttttgttctagtagttttctttataatgaaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23392" stop="25611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23692" g_stop="24286" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25262" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="779" r_length="184" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E710954" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23692" e_stop="24286"/>
          <exon e_start="25077" e_stop="25262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGAT</genome_strand>
        <mrna_strand>CCGCGGTGGAAGAGGCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GNTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460047" ref_strand="+" ref_description="SGN-E460047 [cPRO-29-D24]">
      <seq>gccgtggaggccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacggattcctgaccccagacttctggaaagagactcgtttcaccaaatctcctttccaagagtactttgatatcttggcaaaacagcgaataaagttattgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23406" stop="25488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23706" g_stop="24286" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25210" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="714" r_length="133" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E460047" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23706" e_stop="24286"/>
          <exon e_start="25077" e_stop="25210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTA</genome_strand>
        <mrna_strand>GCCGTGGAGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGATTCCTGACCCCAGACTTCTGGAAAGAGACTCGTTTCACCAAATCTCCTTTCCAAGAGTACTTTGATATCTTGGCAAAA-CAGCGAATAAAGTTATTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560222" ref_strand="+" ref_description="SGN-E560222 [19842]">
      <seq>gccgtggcggccgtcgtccacgccgtgaaacagaggaggagaaatgggttccggtgacaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcatgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcaacatttgattgtttaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23406" stop="25399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23706" g_stop="24286" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25099" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="604" r_length="23" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E560222" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23706" e_stop="24286"/>
          <exon e_start="25077" e_stop="25099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAA</genome_strand>
        <mrna_strand>GCCGTGGCGGCCGTCGTCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCATGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTTGATTGTTTAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448168" ref_strand="+" ref_description="SGN-E448168 [cSTS-1-N16]">
      <seq>ccgtcgtccacgtcgtgaaacagaggaggagaaatgggttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaagatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcttttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacatactgtgccttgcaaggttacagggaaatgtgggtctgntactgtgaggatggtccctgctcctcgtggtgctggtattgttgctgctcgtgtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23416" stop="24501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23716" g_stop="24201" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E448168" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23716" e_stop="24201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCC</genome_strand>
        <mrna_strand>CCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAGATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCTTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACATACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGNTACTGTGAGGATGGTCCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307214" ref_strand="+" ref_description="SGN-E307214 [cLEY-15-P9]">
      <seq>tccacgccgtgaaacagaggaggagaaatgggttccagtgacaaagctgggaatgctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaagtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagagaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggatacagggaaatgtgggtctgttactgagaggatggtgcctgctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23422" stop="24469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23722" g_stop="24169" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E307214" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23722" e_stop="24169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCT</genome_strand>
        <mrna_strand>TCCACGCCGTGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTGGGAATGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAAGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGAGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGATACAGGGAAATGTGGGTCTGTTACTGAGAGGATGGTGCCTGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569817" ref_strand="+" ref_description="SGN-E569817 [14306]">
      <seq>tcgtgaaacagaggagagaaatgggttccggtcacaaagctagaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaagggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtagtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatgggtgcctgctccctcgtgggtgctggtattgttgctgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23428" stop="24495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23728" g_stop="24195" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E569817" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23728" e_stop="24195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAA-GGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGAT-GGTGCCTGCT-CCTCGT-GGTGCTGGTATAGTTGCTGCTCG</genome_strand>
        <mrna_strand>TCGTGAAACAGAGGA-GAGAAATGGGTTCCGGTCACAAAGCTA-GAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTA-GTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGGTGCCTGCTCCCTCGTGGGTGCTGGTATTGTTGCTGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288336" ref_strand="+" ref_description="SGN-E288336 [cLES-16-L16]">
      <seq>tgaaacagaggaggagaaatgggttccagtgacaaagctaggaaggctcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23431" stop="24577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23731" g_stop="24277" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E288336" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23731" e_stop="24277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAAC</genome_strand>
        <mrna_strand>TGAAACAGAGGAGGAGAAATGGGTTCCAGTGACAAAGCTAGGAAGGCTCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558658" ref_strand="+" ref_description="SGN-E558658 [18033]">
      <seq>aaacagaggaggagaaatgggttccggtgacaaagctaggaaggctcgtgaaagattggaaaaatcaagtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcatgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacaggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcatttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23433" stop="24568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23733" g_stop="24268" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E558658" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23733" e_stop="24268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGA-TGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACA-GGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACC</genome_strand>
        <mrna_strand>AAACAGAGGAGGAGAAATGGGTTCCGGTGACAAAGCTAGGAAGGCTCGTGAAAGATTGGAAAAATCAAGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCATGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCA-TTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561112" ref_strand="+" ref_description="SGN-E561112 [20872]">
      <seq>aatgggttccggtgacaaaagctaggaaggctcgtgaaagatggaaaaatcaagtcacttgagcaaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcatgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcaacatttgattgtttaactgaagacctacgcggttccttgaccccccagaatttctggaaagaagactcgcttcaccaaatctccatttccaagaagtactttgatatccctggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23501" stop="25478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23748" g_stop="24286" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.71"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25186" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="661" r_length="120" r_score="0.764"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E561112" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23748" e_stop="24286"/>
          <exon e_start="25077" e_stop="25186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGTTCCGGTCAC-TAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAA-TTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAA-TGAAGACTTACG-GGTTCCT-GA--CCCCAG-ACTTCTGGAAAG-AGACTCGGTTCACCAAATCTCCA-TTCCAAG-AGTACTTTGATAT-CTTGGCAAA</genome_strand>
        <mrna_strand>AATGGGTTCCGGTGACAAAAGCTAGGAAGGCTCGTGAAAGATGGAAAAATCAAGTCACTTGAGCAAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCATGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTTGATTGTTTAACTGAAGACCTACGCGGTTCCTTGACCCCCCAGAATTTCTGGAAAGAAGACTCGCTTCACCAAATCTCCATTTCCAAGAAGTACTTTGATATCCCTGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589453" ref_strand="+" ref_description="SGN-E589453 [43027]">
      <seq>gttgaaaacaaaccaaaacaaggaacattatgttttgcaagtctgcggaaaacatccctcagaaacagaacaaaatttagaatactaacgtatcagagagaagagaactactagaacaaaacaacacatctaatgaatcaagcctcaaccctctcaggcgctgcctcttcggtggcgtagacaataaccttatttgctggttttgccaagatatcaaagtactcttggaatggagatttggtgaaacgagtctctttccagaagtctggggtcaggaacccgtaagtcttcattaaacaatcaaaggtagccttaacgaagttgccaagggttttggtggatccacgagaagatgtgaacacatcttcaataccagcaaactgaaggaccttcttggggacacgagcagcaacaataccagcaccacgaggagcaggcaccatcctcacagtaacagacccacatttccctgtaaccttgcaaggcacagtgtgtggcttaccaatcttgttaccccagtaacctctcctcactggaatcactgatagcttagccaatataattcctccacgaatagcagtagcgacttccttcgagcacttaacacccaaaccaacgtgaccattcccgtcacctacaacaacaaaagccttgaacctggttctctgtccggcacgggtctgcttctgaaccggcatgatcttcatcacctcatccttggagagatggaccgatgagagtatcgatgatttgaaactccttggattgggagtgagtgaaaggtagatttgctcaaagtgagcggatttttccatccttaacgagccttcctaactttgtgacggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="25702" stop="23454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25402" g_stop="25082" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25081" i_stop="24822" i_length="260">
            <donor d_prob="0.170" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24821" g_stop="24816" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="310" r_length="4" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24815" i_stop="24288" i_length="528">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24287" g_stop="23753" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="849" r_length="539" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E589453" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25402" e_stop="25082"/>
          <exon e_start="24821" e_stop="24816"/>
          <exon e_start="24287" e_stop="23753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAAACAAACCAAAACAAGGAACATTATGTTTTGCAAGTCTGCGGAAAATATCCCTCAGAAACAGAACAAAATTTAGAATACTAACGTATCAGAGAAGAGAACTACTAGAACAAAACGACAGAAGGACTCATATCACATCTAAAATGAATCAAGCCTCAACCCTCTCAGGTGCTGCCTCTTCAGTGGCGTACACAATAACCTTATTGGCAGGTTTTGCCAAGATATCAAAGTACTCTTGGAATGGAGATTTGGTGAACCGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAACCCGTAAGTCTTCATTAAACAATCAAAGGTAGCCTACATGTATAAAATGAGTGGCATCAGACTCAAGCACAGCAAATATATTGTAAATGAGCAAAAATGAAAGCTAATGCTTTTTACGCTATACACAAACCATCACACCAGTTTTGGATAAAAATAGTAGCTGGGTACAACAAAAAGTGTTTCGATGAACACTTGCAATAAGCCACAATCCAAACAACAAACGACTAGTCATTTAATATCTTTTTAAGAACAAAGTGCTTATGACACATTGCAGCACATGTATTGCAGGAAATGGTAAGAATCAGTAATGGTACACACCTACTATCACACAATTCGACTTGCTCAACAATGAATTCAGTGGCAGACACACAATTTCCCACCAATTTAACCAATACTCTTAATACATCCATACTTTTGGAACCAAACTAAACAATCTTGTTCTCGAGAAAGACATGATTTGGAACTATAAGACTAAAGATTGTTACTATCTCTGTCACAATCTACAAAGTTCCAGTGCAATATTTCCAAAAATTTGAGAACTTTGATGTAGCCATGTGATATAACTTACTTATAGAAAAGATCATTTCTTTATTGTTATATTAACATAAAACACATTAAACTCAAGGAAAGTTTTACTGGAATAGACCCGGTTGTCATCTCCACATTAGCTATTTTAAACAAAATGTACAATCAAATTAACCTTTTTGTTCAATTATAATGTGATACGCATCAATTCTTATGCTATAGTATTAAAACTACAAGTAATAGAATCATCACACAATTAACAATAATGATAATCACAGGATCTGTTGAAAGATCGAACCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCGCGAGAAGATGTGAAGACATCTTCGATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACTATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGACCCACATTTCCCTGTAACCTTGCAAGGCACAGTGTGTGGCTTACCAATCTTGTTACCCCAGTAACCTCTCCTCACTGGAATCACTGATAGTTTAGCCAATATAATTCCTCCACGAATAGCAGTAGCGACTTCCTTCGAGCACTTAACACCCAAACCAACGTGACCATTCCCGTCACCTACAACAACAAACGCCTTAAACCTGGTTCTCTGCCCGGCACGGGTCTGCTTCTGAACCGGCATGATTTTCATCACCTCATCCTT-GAGAGATGGACCGATGAGGGTATCTATGATTTGGAACTCCTT-GATTGGGAGTGAGTG-AAGGTAAATTTGCTC-AAGTGAGCGAATTTTGCCATCTTTCACAAGCCTTCCTAGCTTAGTGACCGGAAC</genome_strand>
        <mrna_strand>GTTGAAAACAAACCAAAACAAGGAACATTATGTTTTGCAAGTCTGCGGAAAACATCCCTCAGAAACAGAACAAAATTTAGAATACTAACGTATCAGAG-AGAAGAGAACT---ACTAGA--ACA-AA--A--CA-A-CACATCT--AATGAATCAAGCCTCAACCCTCTCAGGCGCTGCCTCTTCGGTGGCGTAGACAATAACCTTATTTGCTGGTTTTGCCAAGATATCAAAGTACTCTTGGAATGGAGATTTGGTGAAACGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAACCCGTAAGTCTTCATTAAACAATCAAAG....................................................................................................................................................................................................................................................................G-TA-G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCACGAGAAGATGTGAACACATCTTCAATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACAATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGACCCACATTTCCCTGTAACCTTGCAAGGCACAGTGTGTGGCTTACCAATCTTGTTACCCCAGTAACCTCTCCTCACTGGAATCACTGATAGCTTAGCCAATATAATTCCTCCACGAATAGCAGTAGCGACTTCCTTCGAGCACTTAACACCCAAACCAACGTGACCATTCCCGTCACCTACAACAACAAAAGCCTTGAACCTGGTTCTCTGTCCGGCACGGGTCTGCTTCTGAACCGGCATGATCTTCATCACCTCATCCTTGGAGAGATGGACCGATGAGAGTATCGATGATTTGAAACTCCTTGGATTGGGAGTGAGTGAAAGGTAGATTTGCTCAAAGTGAGCGGATTTTTCCATCCTTAACGAGCCTTCCTAACTTTGTGACGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481931" ref_strand="+" ref_description="SGN-E481931 [cSTD-20-K19]">
      <seq>ttccggtcacaaagctaggaaggctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacggattcctgaccccagacttctggaaagagactcgtttcaccaaatctcctttccaagagtactttgatatcttggcaaaaccagcgaataaagttattgtctacgccaccgaagaagcagcagcgcctgagaaggttgaggcttgattcattagatgtgttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23454" stop="25567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23754" g_stop="24286" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25270" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="728" r_length="195" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E481931" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23754" e_stop="24286"/>
          <exon e_start="25077" e_stop="25270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAG-AG--GCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATG</genome_strand>
        <mrna_strand>TTCCGGTCACAAAGCTAGGAAGGCTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGATTCCTGACCCCAGACTTCTGGAAAGAGACTCGTTTCACCAAATCTCCTTTCCAAGAGTACTTTGATATCTTGGCAAAACCAGCGAATAAAGTTATTGTCTACGCCACCGAAGAAGCAGCAGCGCCTGAGAAGGTTGAGGCTTGATTCA--TTAGATGTGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698851" ref_strand="+" ref_description="SGN-E698851 [FA07DB09]">
      <seq>aggaaggcttgcgtaagatggcaaaattcgctcacttgagcaaatttaccttcactcactcccaatcaaggagttccaaatcatagataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtatcgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttagatgtgatatgagtccttctgtcgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23470" stop="25587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23770" g_stop="24286" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25287" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="728" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E698851" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23770" e_stop="24286"/>
          <exon e_start="25077" e_stop="25287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTT</genome_strand>
        <mrna_strand>AGGAAGGCTTGCGTAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472522" ref_strand="+" ref_description="SGN-E472522 [cSTB-29-E7]">
      <seq>ctcgttaaggatggcaaaatccgctcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtggatctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23477" stop="24502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23777" g_stop="24202" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E472522" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E472522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23777" e_stop="24202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCC</genome_strand>
        <mrna_strand>CTCGTTAAGGATGGCAAAATCCGCTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGATCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345505" ref_strand="+" ref_description="SGN-E345505 [cTOF-18-I9]">
      <seq>tcgtgaaggatggcaaaatcaggtcacttgagcaaatctaccttcactcactcccaatcaaggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23480" stop="25490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23778" g_stop="24286" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25190" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="623" r_length="114" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E345505" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23778" e_stop="24286"/>
          <exon e_start="25077" e_stop="25190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCT</genome_strand>
        <mrna_strand>TCGTGAAGGATGGCAAAATCAGGTCACTTGAGCAAATCTACCTTCACTCACTCCCAATCAAGGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448601" ref_strand="+" ref_description="SGN-E448601 [cSTS-3-N15]">
      <seq>ctcactcccaatcaaggagtttcaaatcatcgatactctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacggattcctgaccccagacttctggaaagagactcgtttcaccaaatctcctttccaagagtactttgatatcttggcaaaaccagcgaataaagttattgtctacgccaccgaagaggcagcagcgcctgagagggttgaggcttgattcattagatgtgttatgagatctgttgttttggtctagtagttctcttctctctgatacgttagtattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23524" stop="25624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23824" g_stop="24286" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25324" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="711" r_length="248" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E448601" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23824" e_stop="24286"/>
          <exon e_start="25077" e_stop="25324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCA---CCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-T-TCTCTGATACGTTAGTATTCT</genome_strand>
        <mrna_strand>CTCACTCCCAATCAAGGAGTTTCAAATCATCGATACTCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGATTCCTGACCCCAGACTTCTGGAAAGAGACTCGTTTCACCAAATCTCCTTTCCAAGAGTACTTTGATATCTTGGCAAAACCAGCGAATAAAGTTATTGTCTACGCCACCGAAGAGGCAGCAGCGCCTGAGAGGGTTGAGGCTTGATTCA--TTAGATGTGTTATGAG---ATCTGTTGTTTTGGTCTAGTAGTTCTCTTCTCTCTGATACGTTAGTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551725" ref_strand="+" ref_description="SGN-E551725 [cTSB-1-K15]">
      <seq>ggagtttcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatgttatgtgctctgttgttttgttctagtagttttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttccgcagactttgaaaggataatgttccttgttttggtttgttttcaacaatatatatgaagtttcttaattgatctcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23539" stop="25717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23839" g_stop="24286" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25413" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="782" r_length="334" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="801" polyA_stop="819"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E551725" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23839" e_stop="24286"/>
          <exon e_start="25077" e_stop="25413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-TT-CTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGA</genome_strand>
        <mrna_strand>GGAGTTTCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTTTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTCCGCAGACTTTGAAAGGATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATATATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691292" ref_strand="+" ref_description="SGN-E691292 [LH_Ea05L18]">
      <seq>ccgttttcaaatcatcgataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaactaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctagggtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccactgaagaggcagcacctgagagggttgaggcttgattcattagatgtgatatgagttcttgtgtcttattgttctagtagttctcttctctgatacgttagtattctaaattttgttctgtttctgagggatatttttccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23543" stop="25658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23839" g_stop="24286" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25358" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="729" r_length="281" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E691292" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23839" e_stop="24286"/>
          <exon e_start="25077" e_stop="25358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATA-TTTTCCGC</genome_strand>
        <mrna_strand>CCGTTTTCAAATCATCGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACTAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTAGGGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCA--TTAGATGTGATATGAGTTCTTGTGTCTTATTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTTCCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695132" ref_strand="+" ref_description="SGN-E695132 [LH_Ea05L18](-)">
      <seq>gtttcaaatcatcgataccctcatcggtccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaactaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagcccccccctgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctagggtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcggatcccccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttttggaaagagactcggttccccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtttacgcccctgaagaggcagcccctgagagggttgaggcttgattcattagatgtgatatgagttcttgtgtcttattgttctagtagttctcttctctgatacgttagtattttaaattttgttctgtttttgagggatatttttccgcagacttgcaaaacgtaatgttccttgttttggtttgttttcaacaatccaaaaggatttgatctcatatttttgcggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23542" stop="25733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23842" g_stop="24286" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25431" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="799" r_length="354" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="804" polyA_stop="821"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E695132" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23842" e_stop="24286"/>
          <exon e_start="25077" e_stop="25431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATA-TTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTCATGTTTTT</genome_strand>
        <mrna_strand>GTTTCAAATCATCGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACTAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCCCCCCCTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTAGGGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCCCCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTTTGGAAAGAGACTCGGTTCCCCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTTTACGCCCCTGAAGAGGCAGCCCCTGAGAGGGTTGAGGCTTGATTCA--TTAGATGTGATATGAGTTCTTGTGTCTTATTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTTTAAATTTTGTTCTGTTTTTGAGGGATATTTTTCCGCAGACTTGCAAAACGTAATGTTCCTTGTTTTGGTTTGTTTTCAACAATCCAAAAGGATTTGATCTCATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446096" ref_strand="+" ref_description="SGN-E446096 [cSTA-19-P8]">
      <seq>tcaaatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttaggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23546" stop="25398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23845" g_stop="24286" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25098" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="464" r_length="22" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E446096" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23845" e_stop="24286"/>
          <exon e_start="25077" e_stop="25098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGA</genome_strand>
        <mrna_strand>TCAAATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTAGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428637" ref_strand="+" ref_description="SGN-E428637 [STM-50-N11]">
      <seq>caacaaaatttggggaaattcatatgtanttctcaaaacaaaccaaaacaaggaacattatgttttgcaagtctgcggaaaacattcctcagaaacagaacaaaatttagaatactaacgtatcagagagaagagagaactactagaacaaaacaacagagctcataacacatctaatgaatcaagcctcaaccctctcaggtgctgcctcttcggtggcgtagacaataaccttattggcaggttttgccaagatatcaaagtactcttggaatggagatttggtgaaacgagtctctttccagaagtctggggtcaggaacccgtaagtcttcattaaacaatcaaaggtagccttgacgaagttgccaagggttttggtggatccacgagaagatgtgaagacatcttcaataccagcaaactgaaggaccttcttggggacacgagcagcaacaataccagcaccacgaggagcaggcaccatcctcacagtaacagatccacatttccctgtaaccttgcaaggcacagtgtgtggcttaccaatcttggtaccccagtaacctctcctcactgggatcactgatagcttagccaatataattcctccacgaatagcagtagcgacttccttcgagcacttaacacccaaaccaacgtgaccattcccgtcacctacaacaacaaacgccttggacctggttctctgtccggcacgggtctgcttctgaaccggcatgattttcatcacctcatccttgagagatgggacgatgagagtatcgatgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="25717" stop="23546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25432" g_stop="25082" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25081" i_stop="24822" i_length="260">
            <donor d_prob="0.170" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24821" g_stop="24816" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="354" r_length="4" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24815" i_stop="24288" i_length="528">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24287" g_stop="23846" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="796" r_length="442" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E428637" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25432" e_stop="25082"/>
          <exon e_start="24821" e_stop="24816"/>
          <exon e_start="24287" e_stop="23846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACATGAGATCAAATTCATATGTATTGTTGAAAACAAACCAAAACAAGGAACATTATGTTTTGCAAGTCTGCGGAAAATATCCCTCAGAAACAGAACAAAATTTAGAATACTAACGTATC--AGAG-A-AGAGAACTACTAGAACAAAACGACAGAAGGACTCATATCACATCTAAAATGAATCAAGCCTCAACCCTCTCAGGTGCTGCCTCTTCAGTGGCGTACACAATAACCTTATTGGCAGGTTTTGCCAAGATATCAAAGTACTCTTGGAATGGAGATTTGGTGAACCGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAACCCGTAAGTCTTCATTAAACAATCAAAGGTAGCCTACATGTATAAAATGAGTGGCATCAGACTCAAGCACAGCAAATATATTGTAAATGAGCAAAAATGAAAGCTAATGCTTTTTACGCTATACACAAACCATCACACCAGTTTTGGATAAAAATAGTAGCTGGGTACAACAAAAAGTGTTTCGATGAACACTTGCAATAAGCCACAATCCAAACAACAAACGACTAGTCATTTAATATCTTTTTAAGAACAAAGTGCTTATGACACATTGCAGCACATGTATTGCAGGAAATGGTAAGAATCAGTAATGGTACACACCTACTATCACACAATTCGACTTGCTCAACAATGAATTCAGTGGCAGACACACAATTTCCCACCAATTTAACCAATACTCTTAATACATCCATACTTTTGGAACCAAACTAAACAATCTTGTTCTCGAGAAAGACATGATTTGGAACTATAAGACTAAAGATTGTTACTATCTCTGTCACAATCTACAAAGTTCCAGTGCAATATTTCCAAAAATTTGAGAACTTTGATGTAGCCATGTGATATAACTTACTTATAGAAAAGATCATTTCTTTATTGTTATATTAACATAAAACACATTAAACTCAAGGAAAGTTTTACTGGAATAGACCCGGTTGTCATCTCCACATTAGCTATTTTAAACAAAATGTACAATCAAATTAACCTTTTTGTTCAATTATAATGTGATACGCATCAATTCTTATGCTATAGTATTAAAACTACAAGTAATAGAATCATCACACAATTAACAATAATGATAATCACAGGATCTGTTGAAAGATCGAACCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCGCGAGAAGATGTGAAGACATCTTCGATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACTATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGACCCACATTTCCCTGTAACCTTGCAAGGCACAGTGTGTGGCTTACCAATCTTGTTACCCCAGTAACCTCTCCTCACTGGAATCACTGATAGTTTAGCCAATATAATTCCTCCACGAATAGCAGTAGCGACTTCCTTCGAGCACTTAACACCCAAACCAACGTGACCATTCCCGTCACCTACAACAACAAACGCCTTAAACCTGGTTCTCTGCCCGGCACGGGTCTGCTTCTGAACCGGCATGATTTTCATCACCTCATCCTTGAGAGATGGACCGATGAGGGTATCTATGATTTG</genome_strand>
        <mrna_strand>CAACAAAATTTGGGGAAATTCATATGTANTTCTCAAAACAAACCAAAACAAGGAACATTATGTTTTGCAAGTCTGCGGAAAACATTCCTCAGAAACAGAACAAAATTTAGAATACTAACGTATCAGAGAGAAGAGAGAACTACTAGAACAAAACAACAG-A-G-CTCATAACACATCT--AATGAATCAAGCCTCAACCCTCTCAGGTGCTGCCTCTTCGGTGGCGTAGACAATAACCTTATTGGCAGGTTTTGCCAAGATATCAAAGTACTCTTGGAATGGAGATTTGGTGAAACGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAACCCGTAAGTCTTCATTAAACAATCAAAG....................................................................................................................................................................................................................................................................G-TA-G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGACGAAGTTGCCAAGGGTTTTGGTGGATCCACGAGAAGATGTGAAGACATCTTCAATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACAATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGATCCACATTTCCCTGTAACCTTGCAAGGCACAGTGTGTGGCTTACCAATCTTGGTACCCCAGTAACCTCTCCTCACTGGGATCACTGATAGCTTAGCCAATATAATTCCTCCACGAATAGCAGTAGCGACTTCCTTCGAGCACTTAACACCCAAACCAACGTGACCATTCCCGTCACCTACAACAACAAACGCCTTGGACCTGGTTCTCTGTCCGGCACGGGTCTGCTTCTGAACCGGCATGATTTTCATCACCTCATCCTTGAGAGATGGGACGATGAGAGTATCGATGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560744" ref_strand="+" ref_description="SGN-E560744 [20445]">
      <seq>aatcattgatactcttatcggaccatctctcaaggatgaggtgatgaaaatcatgccggttcagaagcagacccgtggccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcatgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcaacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaaagagtactttgatatcctggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23548" stop="25484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23848" g_stop="24286" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25184" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="549" r_length="109" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E560744" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23848" e_stop="24286"/>
          <exon e_start="25077" e_stop="25184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGT-GCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCC-AAGAGTACTTTGATATCTTGGCA</genome_strand>
        <mrna_strand>AATCATTGATACTCTTATCGGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCATGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAAGAGTACTTTGATATCCTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587532" ref_strand="+" ref_description="SGN-E587532 [41066]">
      <seq>gttttgcaagtctgcggataacatccctcagaaacagaacaaaatttagaatactaacgtatcagagagaagagaactactagaccaaaacaacagatctcataacacatctaatgaatcaagcctcaaccctctcaggcgctgctgcctcttcggtggcgtagacaataactttattcgctggttttgccaagatatcaaagtactcttggaaaggagatttggtgaaacgagtctctttccagaagtctggggtcaggaatccgtaagtcttcattaaacaatcaaaggtagccttaacgaagttgccaagggttttggtggatccacgagaagatgtgaagacatcttcaataccagcaaactgaaggaccttcttggggacacgagcagcaacaataccagcaccacgaggagcaggcaccatcctcacagtaacagacccacatttccccgtaaccttgcaaggcacagtgtgtggcttaccaatcttgttaccccagtaacctctcctcactggaatcactgatagcttagccaatataattcctccacgaatagcagtagcgacttccttcgagcacttaacacccaaaccaacgtgaccattcccgtcacctacaacaacaaacgccttgaacctggttctctgtccggcacgggtctgcttctgaaccggcatgattctcatcacctcatccttgagagatggaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="25671" stop="23566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25371" g_stop="25082" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25081" i_stop="24822" i_length="260">
            <donor d_prob="0.170" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24821" g_stop="24816" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="294" r_length="4" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24815" i_stop="24288" i_length="528">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24287" g_stop="23866" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="716" r_length="422" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E587532" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E587532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25371" e_stop="25082"/>
          <exon e_start="24821" e_stop="24816"/>
          <exon e_start="24287" e_stop="23866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGCAAGTCTGCGGAAAATATCCCTCAGAAACAGAACAAAATTTAGAATACTAACGTATC--AGAGAAGAGAACTACTAGAACAAAACGACAGAAGGACTCATATCACATCTAAAATGAATCAAGCCTCAACCCTCTCA-G-G-TGCTGCCTCTTCAGTGGCGTACACAATAACCTTATTGGCAGGTTTTGCCAAGATATCAAAGTACTCTTGGAATGGAGATTTGGTGAACCGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAACCCGTAAGTCTTCATTAAACAATCAAAGGTAGCCTACATGTATAAAATGAGTGGCATCAGACTCAAGCACAGCAAATATATTGTAAATGAGCAAAAATGAAAGCTAATGCTTTTTACGCTATACACAAACCATCACACCAGTTTTGGATAAAAATAGTAGCTGGGTACAACAAAAAGTGTTTCGATGAACACTTGCAATAAGCCACAATCCAAACAACAAACGACTAGTCATTTAATATCTTTTTAAGAACAAAGTGCTTATGACACATTGCAGCACATGTATTGCAGGAAATGGTAAGAATCAGTAATGGTACACACCTACTATCACACAATTCGACTTGCTCAACAATGAATTCAGTGGCAGACACACAATTTCCCACCAATTTAACCAATACTCTTAATACATCCATACTTTTGGAACCAAACTAAACAATCTTGTTCTCGAGAAAGACATGATTTGGAACTATAAGACTAAAGATTGTTACTATCTCTGTCACAATCTACAAAGTTCCAGTGCAATATTTCCAAAAATTTGAGAACTTTGATGTAGCCATGTGATATAACTTACTTATAGAAAAGATCATTTCTTTATTGTTATATTAACATAAAACACATTAAACTCAAGGAAAGTTTTACTGGAATAGACCCGGTTGTCATCTCCACATTAGCTATTTTAAACAAAATGTACAATCAAATTAACCTTTTTGTTCAATTATAATGTGATACGCATCAATTCTTATGCTATAGTATTAAAACTACAAGTAATAGAATCATCACACAATTAACAATAATGATAATCACAGGATCTGTTGAAAGATCGAACCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCGCGAGAAGATGTGAAGACATCTTCGATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACTATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGACCCACATTTCCCTGTAACCTTGCAAGGCACAGTGTGTGGCTTACCAATCTTGTTACCCCAGTAACCTCTCCTCACTGGAATCACTGATAGTTTAGCCAATATAATTCCTCCACGAATAGCAGTAGCGACTTCCTTCGAGCACTTAACACCCAAACCAACGTGACCATTCCCGTCACCTACAACAACAAACGCCTTAAACCTGGTTCTCTGCCCGGCACGGGTCTGCTTCTGAACCGGCATGATTTTCATCACCTCATCCTTGAGAGATGGACCG</genome_strand>
        <mrna_strand>GTTTTGCAAGTCTGCGGATAACATCCCTCAGAAACAGAACAAAATTTAGAATACTAACGTATCAGAGAGAAGAGAACTACTAGACCAAAACAACAG-A--TCTCATAACACATCT--AATGAATCAAGCCTCAACCCTCTCAGGCGCTGCTGCCTCTTCGGTGGCGTAGACAATAACTTTATTCGCTGGTTTTGCCAAGATATCAAAGTACTCTTGGAAAGGAGATTTGGTGAAACGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAATCCGTAAGTCTTCATTAAACAATCAAAG....................................................................................................................................................................................................................................................................G-TA-G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCACGAGAAGATGTGAAGACATCTTCAATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACAATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGACCCACATTTCCCCGTAACCTTGCAAGGCACAGTGTGTGGCTTACCAATCTTGTTACCCCAGTAACCTCTCCTCACTGGAATCACTGATAGCTTAGCCAATATAATTCCTCCACGAATAGCAGTAGCGACTTCCTTCGAGCACTTAACACCCAAACCAACGTGACCATTCCCGTCACCTACAACAACAAACGCCTTGAACCTGGTTCTCTGTCCGGCACGGGTCTGCTTCTGAACCGGCATGATTCTCATCACCTCATCCTTGAGAGATGGACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303667" ref_strand="+" ref_description="SGN-E303667 [cLEY-6-O9]">
      <seq>ggaccatctctcaaggatgaggtgatgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23567" stop="25404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23867" g_stop="24286" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25104" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="448" r_length="28" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E303667" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23867" e_stop="24286"/>
          <exon e_start="25077" e_stop="25104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTT</genome_strand>
        <mrna_strand>GGACCATCTCTCAAGGATGAGGTGATGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562013" ref_strand="+" ref_description="SGN-E562013 [17333]">
      <seq>gatcattaagaaactttcatatatattgttggaaaacaaaccaaaagaaggaacattatcttttgaaagtctgcgaaaaatatccctcaagaacaagagtcaaaatttagaatactaacatttcataataaagaaaactactagaacaaaacaacagagcacataacatctaatgaatcaagcctcaaccctctcaggtgctgcctcttcggtggcatagacaatcaccttattggcaggttttgccaggatatcaaagtactcttggaatggagatttggtgaagcgagtctctttccagaaatctggggtcaggaacccgtaggtcttcattaaacaatcaaatgttgccttaacgaagtttccaagggttttggtggatccacgagaagatgtgaagacatcttcaataccagcaaactgaaggaccttcttggggacacgagcagcaacaataccagcaccacgaggagcaggcaccatcctcacagtaacagacccacatttccctgtaaccttgcaaggcacagtgtgtggcttcccaatcttgttaccccagtaacctctcctcactggaatcactgatagcttagccaatataattcctccacgaatagcagtagccacttccttcgagcacttaacacccaaacaacatgaccattaccgtcaccgacgacaacaaacgccttaaacctggttctctgtccggcacgggtcttggttctgaaccggcatgattttcatcacctcatccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="25632" stop="23578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25429" g_stop="25082" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.856"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25081" i_stop="24822" i_length="260">
            <donor d_prob="0.170" d_score="0.94"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24821" g_stop="24816" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="350" r_length="4" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24815" i_stop="24288" i_length="528">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24287" g_stop="23878" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="760" r_length="410" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E562013" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E562013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25429" e_stop="25082"/>
          <exon e_start="24821" e_stop="24816"/>
          <exon e_start="24287" e_stop="23878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGAGATCAAATTCATATGTATTGTT-GAAAACAAACCAAAACAAGGAACATTATGTTTTGCAAGTCTGCGGAAAATATCCCTC-AGAAACAGA-ACAAAATTTAGAATACTAACGTATCA-GAGAA-GAGAACTACTAGAACAAAACGACAGAAGGACTCATATCACATCTAAAATGAATCAAGCCTCAACCCTCTCAGGTGCTGCCTCTTCAGTGGCGTACACAATAACCTTATTGGCAGGTTTTGCCAAGATATCAAAGTACTCTTGGAATGGAGATTTGGTGAACCGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAACCCGTAAGTCTTCATTAAACAATCAAAGGTAGCCTACATGTATAAAATGAGTGGCATCAGACTCAAGCACAGCAAATATATTGTAAATGAGCAAAAATGAAAGCTAATGCTTTTTACGCTATACACAAACCATCACACCAGTTTTGGATAAAAATAGTAGCTGGGTACAACAAAAAGTGTTTCGATGAACACTTGCAATAAGCCACAATCCAAACAACAAACGACTAGTCATTTAATATCTTTTTAAGAACAAAGTGCTTATGACACATTGCAGCACATGTATTGCAGGAAATGGTAAGAATCAGTAATGGTACACACCTACTATCACACAATTCGACTTGCTCAACAATGAATTCAGTGGCAGACACACAATTTCCCACCAATTTAACCAATACTCTTAATACATCCATACTTTTGGAACCAAACTAAACAATCTTGTTCTCGAGAAAGACATGATTTGGAACTATAAGACTAAAGATTGTTACTATCTCTGTCACAATCTACAAAGTTCCAGTGCAATATTTCCAAAAATTTGAGAACTTTGATGTAGCCATGTGATATAACTTACTTATAGAAAAGATCATTTCTTTATTGTTATATTAACATAAAACACATTAAACTCAAGGAAAGTTTTACTGGAATAGACCCGGTTGTCATCTCCACATTAGCTATTTTAAACAAAATGTACAATCAAATTAACCTTTTTGTTCAATTATAATGTGATACGCATCAATTCTTATGCTATAGTATTAAAACTACAAGTAATAGAATCATCACACAATTAACAATAATGATAATCACAGGATCTGTTGAAAGATCGAACCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCGCGAGAAGATGTGAAGACATCTTCGATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACTATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGACCCACATTTCCCTGTAACCTTGCAAGGCACAGTGTGTGGCTTACCAATCTTGTTACCCCAGTAACCTCTCCTCACTGGAATCACTGATAGTTTAGCCAATATAATTCCTCCACGAATAGCAGTAGCGACTTCCTTCGAGCACTTAACACCCAAACCAACGTGACCATTCCCGTCACCTACAACAACAAACGCCTTAAACCTGGTTCTCTGCCCGGCACGGGTC-TGCTTCTGAACCGGCATGATTTTCATCACCTCATCCTTG</genome_strand>
        <mrna_strand>GATCATTAAGAAACTTTCATATATATTGTTGGAAAACAAACCAAAAGAAGGAACATTATCTTTTGAAAGTCTGCGAAAAATATCCCTCAAGAACAAGAGTCAAAATTTAGAATACTAACATTTCATAATAAAGAAAACTACTAGAACAAAACAACAG-A-G-CACATA--ACATCT--AATGAATCAAGCCTCAACCCTCTCAGGTGCTGCCTCTTCGGTGGCATAGACAATCACCTTATTGGCAGGTTTTGCCAGGATATCAAAGTACTCTTGGAATGGAGATTTGGTGAAGCGAGTCTCTTTCCAGAAATCTGGGGTCAGGAACCCGTAGGTCTTCATTAAACAATCAAAT....................................................................................................................................................................................................................................................................G--TTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTAACGAAGTTTCCAAGGGTTTTGGTGGATCCACGAGAAGATGTGAAGACATCTTCAATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACAATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGACCCACATTTCCCTGTAACCTTGCAAGGCACAGTGTGTGGCTTCCCAATCTTGTTACCCCAGTAACCTCTCCTCACTGGAATCACTGATAGCTTAGCCAATATAATTCCTCCACGAATAGCAGTAGCCACTTCCTTCGAGCACTTAACACCCAAA-CAACATGACCATTACCGTCACCGACGACAACAAACGCCTTAAACCTGGTTCTCTGTCCGGCACGGGTCTTGGTTCTGAACCGGCATGATTTTCATCACCTCATCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601630" ref_strand="+" ref_description="SGN-E601630 [54674]">
      <seq>gaaaattcatatgtattgttgaaaacaaaccaaaacaaggaacattatgttttgcaagtctgcggataacatccctcagaaacagaacaaaatttagaatactaacgtatcagagagaagagaactactagaccaaaacaacagatctcataacacatctaatgaatcaagcctcaaccctctcaggcgctgctgcctcttcggtggcgtagacaataactttattcgctggttttgccaagatatcaaagtactcttggaaaggagatttggtgaaacgagtctctttccagaagtctggggtcaggaatccgtaagtcttcattaaacaatcaaaggtagccttaacgaagttgccaagggttttggtggatccacgagaagatgtgaagacatcttcaataccagcaaactgaaggaccttcttggggacacgagcagcaacaataccagcaccacgaggagcaggcaccatcctcacagtaacagacccacatttccccgtaaccttgcaaggcacagtgtgtggcttaccaatcttgttaccccagtaacctctcctcactggaatcactgatagcttagccaatataattcctccacgaatagcagtagcgacttccttcgagcacttaacacccaaaccaacgtgaccattcccgtcacctacaaacaacaaacgccttgaacctggttctctgtccggcacgggtctgcttctgaaccggcatgatttttcatcaccttcaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="25717" stop="23581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25419" g_stop="25082" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25081" i_stop="24822" i_length="260">
            <donor d_prob="0.170" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24821" g_stop="24816" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="342" r_length="4" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24815" i_stop="24288" i_length="528">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24287" g_stop="23887" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="745" r_length="403" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E601630" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25419" e_stop="25082"/>
          <exon e_start="24821" e_stop="24816"/>
          <exon e_start="24287" e_stop="23887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTCATATGTATTGTTGAAAACAAACCAAAACAAGGAACATTATGTTTTGCAAGTCTGCGGAAAATATCCCTCAGAAACAGAACAAAATTTAGAATACTAACGTATC--AGAGAAGAGAACTACTAGAACAAAACGACAGAAGGACTCATATCACATCTAAAATGAATCAAGCCTCAACCCTCTCA-G-G-TGCTGCCTCTTCAGTGGCGTACACAATAACCTTATTGGCAGGTTTTGCCAAGATATCAAAGTACTCTTGGAATGGAGATTTGGTGAACCGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAACCCGTAAGTCTTCATTAAACAATCAAAGGTAGCCTACATGTATAAAATGAGTGGCATCAGACTCAAGCACAGCAAATATATTGTAAATGAGCAAAAATGAAAGCTAATGCTTTTTACGCTATACACAAACCATCACACCAGTTTTGGATAAAAATAGTAGCTGGGTACAACAAAAAGTGTTTCGATGAACACTTGCAATAAGCCACAATCCAAACAACAAACGACTAGTCATTTAATATCTTTTTAAGAACAAAGTGCTTATGACACATTGCAGCACATGTATTGCAGGAAATGGTAAGAATCAGTAATGGTACACACCTACTATCACACAATTCGACTTGCTCAACAATGAATTCAGTGGCAGACACACAATTTCCCACCAATTTAACCAATACTCTTAATACATCCATACTTTTGGAACCAAACTAAACAATCTTGTTCTCGAGAAAGACATGATTTGGAACTATAAGACTAAAGATTGTTACTATCTCTGTCACAATCTACAAAGTTCCAGTGCAATATTTCCAAAAATTTGAGAACTTTGATGTAGCCATGTGATATAACTTACTTATAGAAAAGATCATTTCTTTATTGTTATATTAACATAAAACACATTAAACTCAAGGAAAGTTTTACTGGAATAGACCCGGTTGTCATCTCCACATTAGCTATTTTAAACAAAATGTACAATCAAATTAACCTTTTTGTTCAATTATAATGTGATACGCATCAATTCTTATGCTATAGTATTAAAACTACAAGTAATAGAATCATCACACAATTAACAATAATGATAATCACAGGATCTGTTGAAAGATCGAACCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCGCGAGAAGATGTGAAGACATCTTCGATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACTATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGACCCACATTTCCCTGTAACCTTGCAAGGCACAGTGTGTGGCTTACCAATCTTGTTACCCCAGTAACCTCTCCTCACTGGAATCACTGATAGTTTAGCCAATATAATTCCTCCACGAATAGCAGTAGCGACTTCCTTCGAGCACTTAACACCCAAACCAACGTGACCATTCCCGTCACCTAC-AACAACAAACGCCTTAAACCTGGTTCTCTGCCCGGCACGGGTCTGCTTCTGAACCGGCATGA-TTTTCATCACC</genome_strand>
        <mrna_strand>GAAAATTCATATGTATTGTTGAAAACAAACCAAAACAAGGAACATTATGTTTTGCAAGTCTGCGGATAACATCCCTCAGAAACAGAACAAAATTTAGAATACTAACGTATCAGAGAGAAGAGAACTACTAGACCAAAACAACAG-A--TCTCATAACACATCT--AATGAATCAAGCCTCAACCCTCTCAGGCGCTGCTGCCTCTTCGGTGGCGTAGACAATAACTTTATTCGCTGGTTTTGCCAAGATATCAAAGTACTCTTGGAAAGGAGATTTGGTGAAACGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAATCCGTAAGTCTTCATTAAACAATCAAAG....................................................................................................................................................................................................................................................................G-TA-G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCACGAGAAGATGTGAAGACATCTTCAATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACAATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGACCCACATTTCCCCGTAACCTTGCAAGGCACAGTGTGTGGCTTACCAATCTTGTTACCCCAGTAACCTCTCCTCACTGGAATCACTGATAGCTTAGCCAATATAATTCCTCCACGAATAGCAGTAGCGACTTCCTTCGAGCACTTAACACCCAAACCAACGTGACCATTCCCGTCACCTACAAACAACAAACGCCTTGAACCTGGTTCTCTGTCCGGCACGGGTCTGCTTCTGAACCGGCATGATTTTTCATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251884" ref_strand="+" ref_description="SGN-E251884 [cLEG-14-N16]">
      <seq>gtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccagggtgaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttagatgtgatatgagtcagtagttctcttctctgatacgttagtattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23588" stop="25625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23888" g_stop="24286" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25262" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="585" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E251884" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23888" e_stop="24286"/>
          <exon e_start="25077" e_stop="25262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGAT</genome_strand>
        <mrna_strand>GTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGGTGAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283126" ref_strand="+" ref_description="SGN-E283126 [cLER-17-M9]">
      <seq>gtgatgaaaatcatgccggttcagaagcagacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23588" stop="25420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23888" g_stop="24286" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25120" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="443" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E283126" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23888" e_stop="24286"/>
          <exon e_start="25077" e_stop="25120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCC</genome_strand>
        <mrna_strand>GTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463155" ref_strand="+" ref_description="SGN-E463155 [cPRO-13-D8]">
      <seq>tgaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtcggtgacggtaatggtcacgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaaggccttcagtttgctggtattgaagatgtcttcacatcttctcctggattcaccaaaacccttggaaacttccttaaggggacatttgattggttaatgaagaactaccggttcctgaccccagaattctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23592" stop="25432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23892" g_stop="24286" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.90"/>
            <acceptor a_prob="0.958" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25132" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="451" r_length="56" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E463155" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23892" e_stop="24286"/>
          <exon e_start="25077" e_stop="25132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAA</genome_strand>
        <mrna_strand>TGAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTCGGTGACGGTAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAAGGCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCCTGGATTCACCAAAACCCTTGGAAACTTCCTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGACATTTGATTGGTTAATGAAGAACTACCGGTTCCTGACCCCAGAATTCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694778" ref_strand="+" ref_description="SGN-E694778 [LH_Ea04M24](-)">
      <seq>gaaaatcatgccagttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtttgggtgttaagtgctcaaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgcccgtgtccctaagaaggtccttcagtttgctggtattgaagatgtcttcccatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaaaacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaccctgccaataaggttattgtttacgcccccgaagaggcagcccctgagagggttgaggcttgattcattagatgttatgtgctctgttgttttgttctagtagttttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttccgcacgactttcaaaaggataatgttcccttgttttggtttgttttaaagcaatatatatgaagttttcttaattgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23593" stop="25725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23893" g_stop="24286" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25389" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="707" r_length="313" r_score="0.863"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="747" polyA_stop="767"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E694778" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23893" e_stop="24286"/>
          <exon e_start="25077" e_stop="25389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-TT-CTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCGCA-GACTTGCAAAA-CATAATGTT-CCTTGTTTTG</genome_strand>
        <mrna_strand>GAAAATCATGCCAGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTTTGGGTGTTAAGTGCTCAAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCCCGTGTCCCTAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCCCATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAAACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAACCCTGCCAATAAGGTTATTGTTTACGCCCCCGAAGAGGCAGCCCCTGAGAGGGTTGAGGCTTGATTCA--TTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTTTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTCCGCACGACTTTCAAAAGGATAATGTTCCCTTGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452491" ref_strand="+" ref_description="SGN-E452491 [cSTS-17-C7]">
      <seq>gaaaatcatgccggttcagaagcagacccgtgccggacagagaaccaggttcaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtggatctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggcaacttcgtcaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcgtttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcattagatgtgttatgagctctgntgntttgttctagtangtctctcttctctctgatacgttagtattctaaatttttgtctgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23593" stop="25641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23893" g_stop="24286" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25341" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="658" r_length="264" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E452491" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23893" e_stop="24286"/>
          <exon e_start="25077" e_stop="25341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTA-GT-TCTC-T-TCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTC</genome_strand>
        <mrna_strand>GAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGATCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGCAACTTCGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGTTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCA--TTAGATGTGTTATGAG--C-TCTGNTGNTTTGTTCTAGTANGTCTCTCTTCTCTCTGATACGTTAGTATTCTAAATTTTTGTCTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570699" ref_strand="+" ref_description="SGN-E570699 [15325]">
      <seq>gatcaaattaagaaaattcatatgtattgttgaaaacaaaccaaaacaaggaacattatgttttgcaagtctgcggataacatccctcagaaacagaacaaaatttagaatactaacgtatcagagagaagagaactactagaccaaaacaacagatctcataacacatctaatgaatcaagcctcaaccctctcaggcgctgctgcctcttcggtggcgtagacaataactttattcgctggttttgccaagatatcaaagtactcttggaaaggagatttggtgaaacgagtctctttccagaagtctggggtcaggaatccgtaagtcttcattaaacaatcaaaggtagccttaacgaagttgccaagggttttggtggatccacgacgaagatgtgaagacatcttcaataccagcaaactgaaggaccttcttggggacacgagcagcaacaataccagcaccacgaggagcaggcaccatcctcacagtaacagacccacatttccccgtaaccttgcaaggcacagtgtgtggcttaccaatcttgttacccccagtaacctctcctcactggaatcactgatagcttagccaatataattcctccacgaatagcagtagcgacttccttcgagcacttaagaccaaagcagcgtgaccattcccgtcacctacaacaacaaacgcttgaacctggttctctgtcggcacgggtctgttctgaaccggctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="25728" stop="23596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25431" g_stop="25082" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25081" i_stop="24822" i_length="260">
            <donor d_prob="0.170" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24821" g_stop="24816" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="353" r_length="4" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24815" i_stop="24288" i_length="528">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24287" g_stop="23896" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="742" r_length="389" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E570699" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25431" e_stop="25082"/>
          <exon e_start="24821" e_stop="24816"/>
          <exon e_start="24287" e_stop="23896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACATGAGATCAAATTCATATGTATTGTTGAAAACAAACCAAAACAAGGAACATTATGTTTTGCAAGTCTGCGGAAAATATCCCTCAGAAACAGAACAAAATTTAGAATACTAACGTATC--AGAGAAGAGAACTACTAGAACAAAACGACAGAAGGACTCATATCACATCTAAAATGAATCAAGCCTCAACCCTCTCA-G-G-TGCTGCCTCTTCAGTGGCGTACACAATAACCTTATTGGCAGGTTTTGCCAAGATATCAAAGTACTCTTGGAATGGAGATTTGGTGAACCGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAACCCGTAAGTCTTCATTAAACAATCAAAGGTAGCCTACATGTATAAAATGAGTGGCATCAGACTCAAGCACAGCAAATATATTGTAAATGAGCAAAAATGAAAGCTAATGCTTTTTACGCTATACACAAACCATCACACCAGTTTTGGATAAAAATAGTAGCTGGGTACAACAAAAAGTGTTTCGATGAACACTTGCAATAAGCCACAATCCAAACAACAAACGACTAGTCATTTAATATCTTTTTAAGAACAAAGTGCTTATGACACATTGCAGCACATGTATTGCAGGAAATGGTAAGAATCAGTAATGGTACACACCTACTATCACACAATTCGACTTGCTCAACAATGAATTCAGTGGCAGACACACAATTTCCCACCAATTTAACCAATACTCTTAATACATCCATACTTTTGGAACCAAACTAAACAATCTTGTTCTCGAGAAAGACATGATTTGGAACTATAAGACTAAAGATTGTTACTATCTCTGTCACAATCTACAAAGTTCCAGTGCAATATTTCCAAAAATTTGAGAACTTTGATGTAGCCATGTGATATAACTTACTTATAGAAAAGATCATTTCTTTATTGTTATATTAACATAAAACACATTAAACTCAAGGAAAGTTTTACTGGAATAGACCCGGTTGTCATCTCCACATTAGCTATTTTAAACAAAATGTACAATCAAATTAACCTTTTTGTTCAATTATAATGTGATACGCATCAATTCTTATGCTATAGTATTAAAACTACAAGTAATAGAATCATCACACAATTAACAATAATGATAATCACAGGATCTGTTGAAAGATCGAACCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCGCGA-GAAGATGTGAAGACATCTTCGATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACTATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGACCCACATTTCCCTGTAACCTTGCAAGGCACAGTGTGTGGCTTACCAATCTTGTTA-CCCCAGTAACCTCTCCTCACTGGAATCACTGATAGTTTAGCCAATATAATTCCTCCACGAATAGCAGTAGCGACTTCCTTCGAGCACTTAACACCCAAACCAACGTGACCATTCCCGTCACCTACAACAACAAACGCCTTAAACCTGGTTCTCTGCCCGGCACGGGTCTGCTTCTGAACCGGCATGATT</genome_strand>
        <mrna_strand>GATCAAATTA-AGAAAATTCATATGTATTGTTGAAAACAAACCAAAACAAGGAACATTATGTTTTGCAAGTCTGCGGATAACATCCCTCAGAAACAGAACAAAATTTAGAATACTAACGTATCAGAGAGAAGAGAACTACTAGACCAAAACAACAG-A--TCTCATAACACATCT--AATGAATCAAGCCTCAACCCTCTCAGGCGCTGCTGCCTCTTCGGTGGCGTAGACAATAACTTTATTCGCTGGTTTTGCCAAGATATCAAAGTACTCTTGGAAAGGAGATTTGGTGAAACGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAATCCGTAAGTCTTCATTAAACAATCAAAG....................................................................................................................................................................................................................................................................G-TA-G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCACGACGAAGATGTGAAGACATCTTCAATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACAATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGACCCACATTTCCCCGTAACCTTGCAAGGCACAGTGTGTGGCTTACCAATCTTGTTACCCCCAGTAACCTCTCCTCACTGGAATCACTGATAGCTTAGCCAATATAATTCCTCCACGAATAGCAGTAGCGACTTCCTTCGAGCACTTAAGA-CCAAAGCAGCGTGACCATTCCCGTCACCTACAACAACAAACG-CTTGAACCTGGTTCTCTG-TCGGCACGGGTCTG-TTCTGAACCGGC-TGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454836" ref_strand="+" ref_description="SGN-E454836 [cSTS-24-D23]">
      <seq>cagacccgtgccggacagagaaccaggttcaaggcttttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacatactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtgttcacatcttctcgtggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcgtttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagcgggttgaggcttgattcattagatgtgttatgagctctgttgttttgttctagtagttntctcttctctctgatacgttagtattctaaattctgttctgtttctgagggatgttttccgcagacttgcaaaacataatgttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23615" stop="25682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23915" g_stop="24286" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25382" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="677" r_length="305" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E454836" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23915" e_stop="24286"/>
          <exon e_start="25077" e_stop="25382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAG-T-TCTCTT--CTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCT</genome_strand>
        <mrna_strand>CAGACCCGTGCCGGACAGAGAACCAGGTTCAAGGCTTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACATACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTGTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGTTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGCGGGTTGAGGCTTGATTCA--TTAGATGTGTTATGAG--C-TCTGTTGTTTTGTTCTAGTAGTTNTCTCTTCTCTCTGATACGTTAGTATTCTAAATTCTGTTCTGTTTCTGAGGGATGTTTTCCGCAGACTTGCAAAACATAATGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571343" ref_strand="+" ref_description="SGN-E571343 [12716]">
      <seq>cagacccgtgccggacagagaaccaggtttaaggcgtttgttgtcgtacggtgacgggtgatggtcatgttggtttgggtgttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattgggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttggcaaggttacaggggaaatgtgggtctgttactgtgaggatggtgcctggctcctcgtggttgctggtattgttgctgctcgttgtccccaagaaggtccttcagtttgctggtacttgaagatgtcttcacatcttctcgtggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23615" stop="24557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23915" g_stop="24257" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E571343" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23915" e_stop="24257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTA-GGTGACGGG-AATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATT-GGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTT-GCAAGGTTACA-GGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCT-GCTCCTCGTGG-TGCTGGTATAGTTGCTGCTCG-TGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTA-TCGAAGATGTCTTCACATCTTCTCGCGGAT</genome_strand>
        <mrna_strand>CAGACCCGTGCCGGACAGAGAACCAGGTTTAAGGCGTTTGTTGTCGTACGGTGACGGGTGATGGTCATGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGGCAAGGTTACAGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGGCTCCTCGTGGTTGCTGGTATTGTTGCTGCTCGTTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTACTTGAAGATGTCTTCACATCTTCTCGTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350008" ref_strand="+" ref_description="SGN-E350008 [cTOS-4-A18]">
      <seq>agacccgtgccgggcagagaaccaggtttaaggcgtttgttgttgtaggtgacgggaatggtcacgttggtttgggtgttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttagatgtgatatgagtcagtagttctcttctctgatacgttagtattctaaattttgttctgtttctgagggatattttccgcagacttgcaaaacataatgttccttgttttggtttgttttcacaatacatatgaatttgatctcatgtttttgcttgattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23616" stop="25740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23916" g_stop="24286" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25440" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="716" r_length="345" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="717" polyA_stop="729"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E350008" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23916" e_stop="24286"/>
          <exon e_start="25077" e_stop="25440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTCATGTTTTTGCTTGATTA</genome_strand>
        <mrna_strand>AGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGA----------------G-TC-AGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTC-ACAATACATATGAATTTGATCTCATGTTTTTGCTTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551850" ref_strand="+" ref_description="SGN-E551850 [cTSB-2-A3]">
      <seq>accaggttcaaggcgtttgttgttgtaggtgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatgttatgtgctctgttgttttgttctagtagttttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttccgcagactttgaaaggataatgttccttgttttggtttgttttcaacaatatatatgaagtttcttaattgaaaaanaanaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23636" stop="25717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23936" g_stop="24286" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25413" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="685" r_length="334" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="708" polyA_stop="718"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E551850" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23936" e_stop="24286"/>
          <exon e_start="25077" e_stop="25413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-TT-CTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGA</genome_strand>
        <mrna_strand>ACCAGGTTCAAGGCGTTTGTTGTTGTAGGTGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTTTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTCCGCAGACTTTGAAAGGATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATATATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348718" ref_strand="+" ref_description="SGN-E348718 [cTOF-29-A5]">
      <seq>tgacggtaatggccacgttggtctgggtggttaaagtgctcaaaggaaagtagctactgctattcgtggaggaaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatgttatgtgctctgttgttttgttctagtagttttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttccgcagactttgaaaggataatgttccttgttttgggtttgttttcacaatatatatgaagtttctaaattgatctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23665" stop="25717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23965" g_stop="24286" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25389" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="636" r_length="310" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="679" polyA_stop="690"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E348718" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23965" e_stop="24286"/>
          <exon e_start="25077" e_stop="25389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGGGAATGGTCACGTTGGTTTGGGT-GTT-AAGTGCTCGAAGGA-AGTCGCTACTGCTATTCGTGGAGG-AATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-TT-CTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTG</genome_strand>
        <mrna_strand>TGACGGTAATGGCCACGTTGGTCTGGGTGGTTAAAGTGCTCAAAGGAAAGTAGCTACTGCTATTCGTGGAGGAAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTTTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTCCGCAGACTTTGAAAGGATAATGTTCCTTGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342150" ref_strand="+" ref_description="SGN-E342150 [cTOF-10-B15]">
      <seq>tgacggtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatgttatgtgctctgttgttttgttctagtagttttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttncgcagactttgaaaggataatgttccttgttttgggtttgttttcaacatatatatggaagtttcttaattgatctcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23665" stop="25717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23965" g_stop="24286" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25389" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="632" r_length="310" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="676" polyA_stop="689"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E342150" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23965" e_stop="24286"/>
          <exon e_start="25077" e_stop="25389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-TT-CTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTG</genome_strand>
        <mrna_strand>TGACGGTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTTTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTNCGCAGACTTTGAAAGGATAATGTTCCTTGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556293" ref_strand="+" ref_description="SGN-E556293 [cTSD-3-A17]">
      <seq>gtaatggccacgttggtctgggtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatgttatgtgctctgttgttttgttctagtagttttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttccgcagactttgaaaggataatgttccttgttttggtttgttttcaacaatatatatgaagtttcttaattgatctcatcttaaaaaaaaagaaagtacatatctcaaaaataaaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23670" stop="25717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23970" g_stop="24286" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25413" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="651" r_length="334" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="687"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E556293" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23970" e_stop="24286"/>
          <exon e_start="25077" e_stop="25413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-TT-CTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGA</genome_strand>
        <mrna_strand>GTAATGGCCACGTTGGTCTGGGTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTTTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTCCGCAGACTTTGAAAGGATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATATATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271999" ref_strand="-" ref_description="SGN-E271999 [cLEM-8-M24]">
      <seq>gtgttaagtgctcaaaggaagtagctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacttacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacttgagagggttgaggcttgattcgttagatgttatgtgctctgttgttttgttctagtagttttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttccgcagactttgaaaggataatgttccttgttttggtttgttttcaacaatatatatgaagtttcttaattgatctcatcttatcattttacctgacgtaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23691" stop="25717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23991" g_stop="24286" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25413" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="630" r_length="334" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E271999" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271999" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23991" e_stop="24286"/>
          <exon e_start="25077" e_stop="25413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-TT-CTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGA</genome_strand>
        <mrna_strand>GTGTTAAGTGCTCAAAGGAAGTAGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACTTGAGAGGGTTGAGGCTTGATTC--GTTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTTTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTCCGCAGACTTTGAAAGGATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATATATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465737" ref_strand="+" ref_description="SGN-E465737 [cPRO-22-G21]">
      <seq>gttaagtgctcgaaggaagtggctactgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatactggcaaaacctgccaataaggtgattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcattagatgttatgtgctctgttgttttgttctagtagtcttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttacgcagactttcaaaaacataatgttccttgttttggtttgttttcacaatatatatgaagtttcttaattgatctcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23693" stop="25717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23993" g_stop="24286" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25413" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="628" r_length="334" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="660"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E465737" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23993" e_stop="24286"/>
          <exon e_start="25077" e_stop="25413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAG--TTCTCTTCTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCGCAGACTTGC-AAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGA</genome_strand>
        <mrna_strand>GTTAAGTGCTCGAAGGAAGTGGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATACTGGCAAAACCTGCCAATAAGGTGATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCA--TTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTCTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTACGCAGACTTTCAAAAACATAATGTTCCTTGTTTTGGTTTGTTTTC-ACAATATATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357364" ref_strand="+" ref_description="SGN-E357364 [cTOS-23-F7]">
      <seq>ttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttagatgtgatatgagtcagtagttctcttctctgatacgttagtattctaaattttgttctgtttctgaaggatattttccgcagacttgcaaaacataatggtccttgttttgggtttgtttcacaatacatatgaaattgatctcatgtttttgcttgattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23694" stop="25740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23994" g_stop="24286" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25442" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="640" r_length="347" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E357364" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.030" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23994" e_stop="24286"/>
          <exon e_start="25077" e_stop="25442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTCATGTTTTTGCTTGATTAGT</genome_strand>
        <mrna_strand>TTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGA----------------G-TC-AGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAAGGATATTTTCCGCAGACTTGCAAAACATAATGGTCCTTGTTTTGGGTTTGTTTC-ACAATACATATGAAATTGATCTCATGTTTTTGCTTGATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352377" ref_strand="+" ref_description="SGN-E352377 [cTOS-9-D7]">
      <seq>ttaagtgctcgaaggaagtcgctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23694" stop="25510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23994" g_stop="24286" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25210" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="427" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E352377" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23994" e_stop="24286"/>
          <exon e_start="25077" e_stop="25210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTA</genome_strand>
        <mrna_strand>TTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231915" ref_strand="+" ref_description="SGN-E231915 [cLED-7-D20]">
      <seq>gctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttagatgtgatatgagtcagtagttctcttctctgatacgttagtattctaaattttgttctgtttctgagggatattttccgcagacttgcaaaacataatgttccttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23714" stop="25687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24014" g_stop="24286" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25387" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="566" r_length="293" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E231915" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.032" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24014" e_stop="24286"/>
          <exon e_start="25077" e_stop="25387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTT</genome_strand>
        <mrna_strand>GCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGA----------------G-TC-AGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242910" ref_strand="+" ref_description="SGN-E242910 [cLED-31-K10]">
      <seq>gctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttagatgtgatatgagtcagtagttctcttctctgatacgttagtattctaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23714" stop="25631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24014" g_stop="24286" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25262" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="459" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E242910" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24014" e_stop="24286"/>
          <exon e_start="25077" e_stop="25262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGAT</genome_strand>
        <mrna_strand>GCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242857" ref_strand="+" ref_description="SGN-E242857 [cLED-31-A5]">
      <seq>gctactgctattcgtggaggaattatattggctaaactatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcctggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttcttgaaaaagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23714" stop="25518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24014" g_stop="24286" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25218" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="415" r_length="142" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E242857" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24014" e_stop="24286"/>
          <exon e_start="25077" e_stop="25218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTG</genome_strand>
        <mrna_strand>GCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCCTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTTGAAAAAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242959" ref_strand="+" ref_description="SGN-E242959 [cLED-31-B24]">
      <seq>gctactgctattcgtggaggaattatattggctaaactatcaatgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaagatagtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23714" stop="24531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24014" g_stop="24231" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E242959" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24014" e_stop="24231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGA</genome_strand>
        <mrna_strand>GCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAATGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAAGATAGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473802" ref_strand="+" ref_description="SGN-E473802 [cSTB-33-H12]">
      <seq>ctgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatactggcaaaacctgccaataaggtgattgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23718" stop="25510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24018" g_stop="24286" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25210" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="403" r_length="134" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E473802" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24018" e_stop="24286"/>
          <exon e_start="25077" e_stop="25210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTA</genome_strand>
        <mrna_strand>CTGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATACTGGCAAAACCTGCCAATAAGGTGATTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403692" ref_strand="+" ref_description="SGN-E403692 [PPC-11-M22]">
      <seq>tgctattcgtggaggaattatattggctaagctatcagtgattccagtgaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacggggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacggattcctgaccccagacttctggaaagagactcgtttcaccaaatctcctttccaagagtactttgatatcttggcaaaaccagcgaataaagttattgtctacgccaccgaagaggcagcagcgcctgagagggttgaggcttgattcattagatgtgttatgagatctgttgttttggtctagtagttctcttctctctgatacgttagtattctaaattttgttctgtttctgagggatgttatccgcagacttgcaaaacataatgttccttgttttggtttgttttcaacaatacatatgaattttcttaatttgatctcatctttttactggattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23719" stop="25734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24019" g_stop="24286" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25418" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="610" r_length="342" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="641" polyA_stop="652"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E403692" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24019" e_stop="24286"/>
          <exon e_start="25077" e_stop="25418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCA---CCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-T-TCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTG</genome_strand>
        <mrna_strand>TGCTATTCGTGGAGGAATTATATTGGCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACGGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGATTCCTGACCCCAGACTTCTGGAAAGAGACTCGTTTCACCAAATCTCCTTTCCAAGAGTACTTTGATATCTTGGCAAAACCAGCGAATAAAGTTATTGTCTACGCCACCGAAGAGGCAGCAGCGCCTGAGAGGGTTGAGGCTTGATTCA--TTAGATGTGTTATGAG---ATCTGTTGTTTTGGTCTAGTAGTTCTCTTCTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATGTTATCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352805" ref_strand="+" ref_description="SGN-E352805 [cTOS-11-I11]">
      <seq>gctaagctatcagtgattccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatgttatgtgctctgttgttttgttctagtagttttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttccgcagactttgaaaggataatgttccttgttttggtttgttttcaacaatatatatgaagtttcttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23744" stop="25717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24044" g_stop="24286" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25413" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="577" r_length="334" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E352805" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24044" e_stop="24286"/>
          <exon e_start="25077" e_stop="25413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-TT-CTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGA</genome_strand>
        <mrna_strand>GCTAAGCTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTTTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTCCGCAGACTTTGAAAGGATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATATATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558255" ref_strand="+" ref_description="SGN-E558255 [17566]">
      <seq>aaattagaatactaacgtatcagagagaagagaactactagaacaaaacaacacatctaatgaatcaagcctcaaccctctcaggcgctgcctcttcggtggcgtagacaataaccttatttgctggttttgccaagatatcaaagtactcttggaatggagatttggtgaaacgagtctctttccagaagtctggggtcaggaacccgtaagtcttcattaaacaatcaaaggtagccttaacgaagttgccaagggttttggtggatccacgagaagatgtgaacacatcttcaataccagcaaactgaaggaccttcttggggacacgagcagcaacaataccagcaccacgaggagcaggcaccatcctcacagtaacagacccacatttccctgtaaccttggcaaggcacagtgtgtggcttaccaatcttgttacccccagtaacctctcctcactggaatcactgatagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="25630" stop="23750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25329" g_stop="25082" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25081" i_stop="24822" i_length="260">
            <donor d_prob="0.170" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24821" g_stop="24816" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="237" r_length="4" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24815" i_stop="24288" i_length="528">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24287" g_stop="24048" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="479" r_length="242" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E558255" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25329" e_stop="25082"/>
          <exon e_start="24821" e_stop="24816"/>
          <exon e_start="24287" e_stop="24048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAGAATACTAACGTATCAGAGAAGAGAACTACTAGAACAAAACGACAGAAGGACTCATATCACATCTAAAATGAATCAAGCCTCAACCCTCTCAGGTGCTGCCTCTTCAGTGGCGTACACAATAACCTTATTGGCAGGTTTTGCCAAGATATCAAAGTACTCTTGGAATGGAGATTTGGTGAACCGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAACCCGTAAGTCTTCATTAAACAATCAAAGGTAGCCTACATGTATAAAATGAGTGGCATCAGACTCAAGCACAGCAAATATATTGTAAATGAGCAAAAATGAAAGCTAATGCTTTTTACGCTATACACAAACCATCACACCAGTTTTGGATAAAAATAGTAGCTGGGTACAACAAAAAGTGTTTCGATGAACACTTGCAATAAGCCACAATCCAAACAACAAACGACTAGTCATTTAATATCTTTTTAAGAACAAAGTGCTTATGACACATTGCAGCACATGTATTGCAGGAAATGGTAAGAATCAGTAATGGTACACACCTACTATCACACAATTCGACTTGCTCAACAATGAATTCAGTGGCAGACACACAATTTCCCACCAATTTAACCAATACTCTTAATACATCCATACTTTTGGAACCAAACTAAACAATCTTGTTCTCGAGAAAGACATGATTTGGAACTATAAGACTAAAGATTGTTACTATCTCTGTCACAATCTACAAAGTTCCAGTGCAATATTTCCAAAAATTTGAGAACTTTGATGTAGCCATGTGATATAACTTACTTATAGAAAAGATCATTTCTTTATTGTTATATTAACATAAAACACATTAAACTCAAGGAAAGTTTTACTGGAATAGACCCGGTTGTCATCTCCACATTAGCTATTTTAAACAAAATGTACAATCAAATTAACCTTTTTGTTCAATTATAATGTGATACGCATCAATTCTTATGCTATAGTATTAAAACTACAAGTAATAGAATCATCACACAATTAACAATAATGATAATCACAGGATCTGTTGAAAGATCGAACCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCGCGAGAAGATGTGAAGACATCTTCGATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACTATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGACCCACATTTCCCTGTAACCTT-GCAAGGCACAGTGTGTGGCTTACCAATCTTGTTA-CCCCAGTAACCTCTCCTCACTGGAATCACTGATAGTT</genome_strand>
        <mrna_strand>AAATTAGAATACTAACGTATCAGAG-AGAAGAGAACT---ACTAGA--ACA-AA--A--CA-A-CACATCT--AATGAATCAAGCCTCAACCCTCTCAGGCGCTGCCTCTTCGGTGGCGTAGACAATAACCTTATTTGCTGGTTTTGCCAAGATATCAAAGTACTCTTGGAATGGAGATTTGGTGAAACGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAACCCGTAAGTCTTCATTAAACAATCAAAG....................................................................................................................................................................................................................................................................G-TA-G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCACGAGAAGATGTGAACACATCTTCAATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACAATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGACCCACATTTCCCTGTAACCTTGGCAAGGCACAGTGTGTGGCTTACCAATCTTGTTACCCCCAGTAACCTCTCCTCACTGGAATCACTGATAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560545" ref_strand="-" ref_description="SGN-E560545 [20215]">
      <seq>atcagtgattccagtgagagagtttactgggtaaacaagattgggaaaccacacaactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgcctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatactggcaaaacctgccaataaggtgattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcattagatgttatgtgctctgttgttttgttctagtagtcttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttacgcagactttcaaaaacataatgttccttgttttggtttgttttcaacaatatatatgaagtttcttaactgatctcaaagaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23752" stop="25730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24052" g_stop="24286" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25413" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="571" r_length="335" r_score="0.881"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="600"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E560545" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560545" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24052" e_stop="24286"/>
          <exon e_start="25077" e_stop="25413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACAC-ACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTG-CTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAG--TTCTCTTCTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCGCAGACTTGC-AAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGA</genome_strand>
        <mrna_strand>ATCAGTGATTCCAGTGA-GAGAGTTTACTGGGTAAACAAGATTGGGAAACCACACAACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATACTGGCAAAACCTGCCAATAAGGTGATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCA--TTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTCTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTACGCAGACTTTCAAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATATATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285049" ref_strand="+" ref_description="SGN-E285049 [cLER-19-B22]">
      <seq>tccagtgaggagaggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatgttatgtgctctgttgttttgttctagtagttttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttccgcagactttgaaaggataatgttccttgttttggtttgttttcaacaatatatatgaagtttcttaattgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23761" stop="25717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24061" g_stop="24286" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25413" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="560" r_length="334" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E285049" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24061" e_stop="24286"/>
          <exon e_start="25077" e_stop="25413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-TT-CTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGA</genome_strand>
        <mrna_strand>TCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTTTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTCCGCAGACTTTGAAAGGATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATATATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288933" ref_strand="+" ref_description="SGN-E288933 [cLES-17-C24]">
      <seq>gaggagaggttactggggtaacaagattggtaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtatcgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttagatgtgatatgagtccttctgtcgttttgttctagtagttctcttctctgatacgttagtattctaaattttgttctgtttctgagggatattttccgcagacttgcaaaacataatgttccttgttttggtttgttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23767" stop="25699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24067" g_stop="24286" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25399" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="543" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E288933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24067" e_stop="24286"/>
          <exon e_start="25077" e_stop="25399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTC</genome_strand>
        <mrna_strand>GAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283946" ref_strand="+" ref_description="SGN-E283946 [cLER-13-H21]">
      <seq>aggttactggggtaacaagattgggaagccacacactgtgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23773" stop="25516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24073" g_stop="24286" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25216" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="354" r_length="140" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E283946" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24073" e_stop="24286"/>
          <exon e_start="25077" e_stop="25216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCAC</genome_strand>
        <mrna_strand>AGGTTACTGGGGTAACAAGATTGGGAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350495" ref_strand="+" ref_description="SGN-E350495 [cTOS-5-I5]">
      <seq>tgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttagatgtgatatgagtcagtagttctcttctctgatacgttagtattctaaattttgttctgtttctgagggatattttccgcagacttgcaaaacataatgttccttgttttggtttgttttcaacaatacatatgaatttgatctcatgtttttgcttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23811" stop="25737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24111" g_stop="24286" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25438" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="520" r_length="344" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E350495" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.035" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24111" e_stop="24286"/>
          <exon e_start="25077" e_stop="25438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTCATGTTTTTGCTTGAT</genome_strand>
        <mrna_strand>TGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGA----------------G-TC-AGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTCATGTTTTTGCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348282" ref_strand="+" ref_description="SGN-E348282 [cTOF-27-D3]">
      <seq>tgccttgcaaggttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatgttatgtgctctgttgttttgttctagtagttttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttccgcagactttgaaaggataatgttccttgttttggtttgttttcaacaatantatatgaagtttcttaattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23811" stop="25706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24111" g_stop="24286" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25407" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="504" r_length="328" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="525" polyA_stop="534"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E348282" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24111" e_stop="24286"/>
          <exon e_start="25077" e_stop="25407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-TT-CTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATAC</genome_strand>
        <mrna_strand>TGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTTTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTCCGCAGACTTTGAAAGGATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265059" ref_strand="+" ref_description="SGN-E265059 [cLEI-2-M16]">
      <seq>ttttttttttttcaagcaaaaacatgagatcaaattcatatgtattgttgaaaacaaaccaaaacaaggaacattatgttttgcaagtctgcggaaaatatccctcagaaacagaacaaaatttagaatactaacgtatcagagaagagaactactgactcatatcacatctaaaatgaatcaagcctcaaccctctcaggtgctgcctcttcagtggcgtacacaataaccttattggcaggttttgccaagatatcaaagtactcttggaatggagatttggtgaaccgagtctctttccagaagtctggggtcaggaacccgtaagtcttcattaaacaatcaaaggtagccttaacgaagttgccaagggttttggtggatccgcgagaagatgtgaagacatcttcaataccagcaaactgaaggaccttcttggggacacgagcagcaactataccagcaccacgaggagcaggcaccatcctcacagtaacagacccacatttccctgtaaccttgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="25737" stop="23814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25437" g_stop="25082" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="349" r_length="338" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25081" i_stop="24822" i_length="260">
            <donor d_prob="0.170" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24821" g_stop="24816" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="353" r_length="4" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24815" i_stop="24288" i_length="528">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24287" g_stop="24114" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="527" r_length="174" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="11" polyA_stop="1"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E265059" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25437" e_stop="25082"/>
          <exon e_start="24821" e_stop="24816"/>
          <exon e_start="24287" e_stop="24114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCAAAAACATGAGATCAAATTCATATGTATTGTTGAAAACAAACCAAAACAAGGAACATTATGTTTTGCAAGTCTGCGGAAAATATCCCTCAGAAACAGAACAAAATTTAGAATACTAACGTATCAGAGAAGAGAACTACTAGAACAAAACGACAGAAGGACTCATATCACATCTAAAATGAATCAAGCCTCAACCCTCTCAGGTGCTGCCTCTTCAGTGGCGTACACAATAACCTTATTGGCAGGTTTTGCCAAGATATCAAAGTACTCTTGGAATGGAGATTTGGTGAACCGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAACCCGTAAGTCTTCATTAAACAATCAAAGGTAGCCTACATGTATAAAATGAGTGGCATCAGACTCAAGCACAGCAAATATATTGTAAATGAGCAAAAATGAAAGCTAATGCTTTTTACGCTATACACAAACCATCACACCAGTTTTGGATAAAAATAGTAGCTGGGTACAACAAAAAGTGTTTCGATGAACACTTGCAATAAGCCACAATCCAAACAACAAACGACTAGTCATTTAATATCTTTTTAAGAACAAAGTGCTTATGACACATTGCAGCACATGTATTGCAGGAAATGGTAAGAATCAGTAATGGTACACACCTACTATCACACAATTCGACTTGCTCAACAATGAATTCAGTGGCAGACACACAATTTCCCACCAATTTAACCAATACTCTTAATACATCCATACTTTTGGAACCAAACTAAACAATCTTGTTCTCGAGAAAGACATGATTTGGAACTATAAGACTAAAGATTGTTACTATCTCTGTCACAATCTACAAAGTTCCAGTGCAATATTTCCAAAAATTTGAGAACTTTGATGTAGCCATGTGATATAACTTACTTATAGAAAAGATCATTTCTTTATTGTTATATTAACATAAAACACATTAAACTCAAGGAAAGTTTTACTGGAATAGACCCGGTTGTCATCTCCACATTAGCTATTTTAAACAAAATGTACAATCAAATTAACCTTTTTGTTCAATTATAATGTGATACGCATCAATTCTTATGCTATAGTATTAAAACTACAAGTAATAGAATCATCACACAATTAACAATAATGATAATCACAGGATCTGTTGAAAGATCGAACCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCGCGAGAAGATGTGAAGACATCTTCGATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACTATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGACCCACATTTCCCTGTAACCTTGCAAG</genome_strand>
        <mrna_strand>TCAAGCAAAAACATGAGATCAAATTCATATGTATTGTTGAAAACAAACCAAAACAAGGAACATTATGTTTTGCAAGTCTGCGGAAAATATCCCTCAGAAACAGAACAAAATTTAGAATACTAACGTATCAGAGAAGAGAACTACT------------------GACTCATATCACATCTAAAATGAATCAAGCCTCAACCCTCTCAGGTGCTGCCTCTTCAGTGGCGTACACAATAACCTTATTGGCAGGTTTTGCCAAGATATCAAAGTACTCTTGGAATGGAGATTTGGTGAACCGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAACCCGTAAGTCTTCATTAAACAATCAAAG....................................................................................................................................................................................................................................................................G-TA-G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCGCGAGAAGATGTGAAGACATCTTCAATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACTATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGACCCACATTTCCCTGTAACCTTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717326" ref_strand="+" ref_description="SGN-E717326 [FB19DE05]">
      <seq>gttacagggaaatgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtatcgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttagatgtgatatgagtccttctgtcgttttgttctagtagttctcttctctgatacgttagtattctaaattttgttctgtttctgagggatattttccgcagacttgcaaaacataatgttccttgttttggtttgttttcaacaatacatatgaatttgatctcnnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23822" stop="25723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24122" g_stop="24286" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25425" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="514" r_length="349" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="529"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E717326" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24122" e_stop="24286"/>
          <exon e_start="25077" e_stop="25425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTCAT</genome_strand>
        <mrna_strand>GTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTCNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215990" ref_strand="+" ref_description="SGN-E215990 [cLEL-13-H7](-)">
      <seq>atgtgggtctgttactgtaagaatggtgcctgctcctcgtggtgctggtaatagttactgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttagatgtgatatgagtcagtagttctcttctctgatacgttagtattctaaattttgttctgtttttgagggatattttccgcagacttgcaaaacataatgttccttgttttggtttgttttcaacaatacatatgaatttgatctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23833" stop="25724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24133" g_stop="24286" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25423" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="484" r_length="329" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="502"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E215990" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24133" e_stop="24286"/>
          <exon e_start="25077" e_stop="25423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGT-ATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTC</genome_strand>
        <mrna_strand>ATGTGGGTCTGTTACTGTAAGAATGGTGCCTGCTCCTCGTGGTGCTGGTAATAGTTACTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGA----------------G-TC-AGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTTTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227469" ref_strand="+" ref_description="SGN-E227469 [cLEL-30-G7](-)">
      <seq>atgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttagatgtgatatgagtcagtagttctcttctctgatacgttagtattctaaattttgttctgtttctgagggatattttccgcagacttgcaaaacataatgttccttgttttggtttgttttcaacaatacatatgaatttgatctcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23833" stop="25724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24133" g_stop="24286" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25423" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="483" r_length="329" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="484" polyA_stop="506"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E227469" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24133" e_stop="24286"/>
          <exon e_start="25077" e_stop="25423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTC</genome_strand>
        <mrna_strand>ATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGA----------------G-TC-AGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266321" ref_strand="+" ref_description="SGN-E266321 [cLEI-3-P14]">
      <seq>gagtttttttttttttttttttattgttgaaaacagaccaaaacaaggaacattgtgttttgcaagtctgcggaaaatatccctcagaaacagaacaaaatttagaatactaacgtatcagagaagagaactactgactcatatcacatctaaaatgaatcaagcctcaaccctctcaggtgctgcctcttcagtggcgtacacaataaccttattggcaggttttgccaagatatcaaagtactcttggaatggagatttggtgaaccgagtctctttccagaagtctggggtcaggaacccgtaagtcttcattaaacaatcaaaggtagccttaacgaagttgccaagggttttggtggatccgcgagaagatgtgaagacatcttcaataccagcaaactgaaggaccttcttggggacacgagcagcaactataccagcaccacgaggagcaggcaccatcctcacagtaacagacccacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="25714" stop="23833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25406" g_stop="25082" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="328" r_length="307" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25081" i_stop="24822" i_length="260">
            <donor d_prob="0.170" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24821" g_stop="24816" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="332" r_length="4" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24815" i_stop="24288" i_length="528">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24287" g_stop="24133" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="487" r_length="155" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="21" polyA_stop="3"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E266321" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25406" e_stop="25082"/>
          <exon e_start="24821" e_stop="24816"/>
          <exon e_start="24287" e_stop="24133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTTGAAAACAAACCAAAACAAGGAACATTATGTTTTGCAAGTCTGCGGAAAATATCCCTCAGAAACAGAACAAAATTTAGAATACTAACGTATCAGAGAAGAGAACTACTAGAACAAAACGACAGAAGGACTCATATCACATCTAAAATGAATCAAGCCTCAACCCTCTCAGGTGCTGCCTCTTCAGTGGCGTACACAATAACCTTATTGGCAGGTTTTGCCAAGATATCAAAGTACTCTTGGAATGGAGATTTGGTGAACCGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAACCCGTAAGTCTTCATTAAACAATCAAAGGTAGCCTACATGTATAAAATGAGTGGCATCAGACTCAAGCACAGCAAATATATTGTAAATGAGCAAAAATGAAAGCTAATGCTTTTTACGCTATACACAAACCATCACACCAGTTTTGGATAAAAATAGTAGCTGGGTACAACAAAAAGTGTTTCGATGAACACTTGCAATAAGCCACAATCCAAACAACAAACGACTAGTCATTTAATATCTTTTTAAGAACAAAGTGCTTATGACACATTGCAGCACATGTATTGCAGGAAATGGTAAGAATCAGTAATGGTACACACCTACTATCACACAATTCGACTTGCTCAACAATGAATTCAGTGGCAGACACACAATTTCCCACCAATTTAACCAATACTCTTAATACATCCATACTTTTGGAACCAAACTAAACAATCTTGTTCTCGAGAAAGACATGATTTGGAACTATAAGACTAAAGATTGTTACTATCTCTGTCACAATCTACAAAGTTCCAGTGCAATATTTCCAAAAATTTGAGAACTTTGATGTAGCCATGTGATATAACTTACTTATAGAAAAGATCATTTCTTTATTGTTATATTAACATAAAACACATTAAACTCAAGGAAAGTTTTACTGGAATAGACCCGGTTGTCATCTCCACATTAGCTATTTTAAACAAAATGTACAATCAAATTAACCTTTTTGTTCAATTATAATGTGATACGCATCAATTCTTATGCTATAGTATTAAAACTACAAGTAATAGAATCATCACACAATTAACAATAATGATAATCACAGGATCTGTTGAAAGATCGAACCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCGCGAGAAGATGTGAAGACATCTTCGATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACTATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGACCCACAT</genome_strand>
        <mrna_strand>TATTGTTGAAAACAGACCAAAACAAGGAACATTGTGTTTTGCAAGTCTGCGGAAAATATCCCTCAGAAACAGAACAAAATTTAGAATACTAACGTATCAGAGAAGAGAACTACT------------------GACTCATATCACATCTAAAATGAATCAAGCCTCAACCCTCTCAGGTGCTGCCTCTTCAGTGGCGTACACAATAACCTTATTGGCAGGTTTTGCCAAGATATCAAAGTACTCTTGGAATGGAGATTTGGTGAACCGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAACCCGTAAGTCTTCATTAAACAATCAAAG....................................................................................................................................................................................................................................................................G-TA-G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCGCGAGAAGATGTGAAGACATCTTCAATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACTATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGACCCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227323" ref_strand="+" ref_description="SGN-E227323 [cLEL-30-F9](-)">
      <seq>tgtgggtctgttactgtgaggatggtgcctgctcctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttgaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatgttatgtgctctgttgttttgttctagtagttttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttccgcagactttgaaaggataatgttccttgttttggtttgttttcaacaatatatatgaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23834" stop="25717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24134" g_stop="24286" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25418" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="491" r_length="339" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E227323" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24134" e_stop="24286"/>
          <exon e_start="25077" e_stop="25418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-TT-CTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTG</genome_strand>
        <mrna_strand>TGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTT-GAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTTTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTCCGCAGACTTTGAAAGGATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATATATATGAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357384" ref_strand="+" ref_description="SGN-E357384 [cTOS-23-L21]">
      <seq>ctgctcctcgtggtgctggtatagttgctgctcgtgtccccaagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttagatgtgatatgagtcagtagttctcttctctgatacgttagtattctaaattttgttctgtttctgagggatattttccgcagacttgcaaaacataatgttccttgttttggtttgttttcaacaatacatatgaatttgatctcatgtttttgcttgaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23862" stop="25737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24162" g_stop="24286" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25436" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="467" r_length="342" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="468" polyA_stop="495"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E357384" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24162" e_stop="24286"/>
          <exon e_start="25077" e_stop="25436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTCATGTTTTTGCTTG</genome_strand>
        <mrna_strand>CTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGA----------------G-TC-AGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTCATGTTTTTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226699" ref_strand="+" ref_description="SGN-E226699 [cLEL-26-H1](-)">
      <seq>caggtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatgttatgtgctctgttgttttgttctagtagttttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttccgcagactttgaaaggataatgttccttgttttggtttgttttcaacaatatatatgaagtttcttaattgatctcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23871" stop="25717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24168" g_stop="24286" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25413" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="453" r_length="334" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="492"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E226699" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24168" e_stop="24286"/>
          <exon e_start="25077" e_stop="25413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-TT-CTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGA</genome_strand>
        <mrna_strand>CAGGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTTTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTCCGCAGACTTTGAAAGGATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATATATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734582" ref_strand="+" ref_description="SGN-E734582 [LB13AB12]">
      <seq>ctcgtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatgttatgtgctctgttgttttgttctagtagttttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttctgcagactttgaaaggataatgttccttgttttggtttgttttcaacaatatatatgaagtttcttanaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23868" stop="25717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24168" g_stop="24286" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25413" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="453" r_length="334" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="487"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E734582" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24168" e_stop="24286"/>
          <exon e_start="25077" e_stop="25413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-TT-CTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGA</genome_strand>
        <mrna_strand>CTCGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTTTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTCTGCAGACTTTGAAAGGATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATATATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226828" ref_strand="+" ref_description="SGN-E226828 [cLEL-26-H1](-)">
      <seq>aggtggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatgttatgtgctctgttgttttgttctagtagttttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttccgcagactttgaaaggataatgttccttgttttggtttgttttcaacaatatatatgaagtttcttaattgatctcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23871" stop="25717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24169" g_stop="24286" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25413" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="452" r_length="334" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="471" polyA_stop="491"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E226828" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24169" e_stop="24286"/>
          <exon e_start="25077" e_stop="25413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-TT-CTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGA</genome_strand>
        <mrna_strand>AGGTGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTTTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTCCGCAGACTTTGAAAGGATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATATATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300759" ref_strand="-" ref_description="SGN-E300759 [cLEW-8-P8]">
      <seq>tggtgctggtattgttgctgctcgtgtccctaagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatgttatgtgctctgttgttttgttctagtagttttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttccgcagactttgaaaggataatgttccttgttttggtttgttttcaacaatatatatgaagtttcttaattgatctcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23872" stop="25717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24172" g_stop="24286" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25413" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="449" r_length="334" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E300759" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300759" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24172" e_stop="24286"/>
          <exon e_start="25077" e_stop="25413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-TT-CTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGA</genome_strand>
        <mrna_strand>TGGTGCTGGTATTGTTGCTGCTCGTGTCCCTAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTTTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTCCGCAGACTTTGAAAGGATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATATATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222111" ref_strand="+" ref_description="SGN-E222111 [cLEL-36-E6](-)">
      <seq>gttgctgctcgtgtccccaaaaaggtccttcagtttgctggaattgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttagatgtgatatgagtcagtagttctcttctctgatacgttagtattctaaattttgttctgtttctgagggatattttccgcagacttgcaaaacataatgttccttgttttggtttgttttcaacaatacatatgaatttgatctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23885" stop="25724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24185" g_stop="24286" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25423" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="431" r_length="329" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="432" polyA_stop="448"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E222111" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24185" e_stop="24286"/>
          <exon e_start="25077" e_stop="25423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTC</genome_strand>
        <mrna_strand>GTTGCTGCTCGTGTCCCCAAAAAGGTCCTTCAGTTTGCTGGAATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGA----------------G-TC-AGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458368" ref_strand="+" ref_description="SGN-E458368 [cPRO-5-B23]">
      <seq>ttttttttttttttttttcagctgataagagaagatcaaattaagaaaattcatatgtattgttgaaaacaaaccaaaacaaggaacattatgttttgcaagtctgcggaaaacatccctcagaaacagaacaaaatttagaatactaacgtatcagagagaagagaaaactactagaacaaaacaacagagctcataacacatctaatgaatcaagcctcaacccgctcaggtgctgcctcttcggtggcgtagacaataaccttattggcaggttttgccaagatatcaaagtactcttggaatggagatttggtgaaacgagtctctttccagaagtctggggtcaggaacccgtaagtcttcattaaacaatcaaaggtagccttaacgaagttgccaagggttttggtggatccacgagaagatgtgaacacatcttcaataccagcaaactgaaggaccttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="25735" stop="23902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25420" g_stop="25082" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="381" r_length="338" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25081" i_stop="24822" i_length="260">
            <donor d_prob="0.170" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24821" g_stop="24816" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="385" r_length="4" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24815" i_stop="24288" i_length="528">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24287" g_stop="24202" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="471" r_length="86" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="18" polyA_stop="1"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E458368" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25420" e_stop="25082"/>
          <exon e_start="24821" e_stop="24816"/>
          <exon e_start="24287" e_stop="24202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATTCATATGTATTGTTGAAAACAAACCAAAACAAGGAACATTATGTTTTGCAAGTCTGCGGAAAATATCCCTCAGAAACAGAACAAAATTTAGAATACTAACGTATC--AGAGAAGAG--AACTACTAGAACAAAACGACAGAAGGACTCATATCACATCTAAAATGAATCAAGCCTCAACCCTCTCAGGTGCTGCCTCTTCAGTGGCGTACACAATAACCTTATTGGCAGGTTTTGCCAAGATATCAAAGTACTCTTGGAATGGAGATTTGGTGAACCGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAACCCGTAAGTCTTCATTAAACAATCAAAGGTAGCCTACATGTATAAAATGAGTGGCATCAGACTCAAGCACAGCAAATATATTGTAAATGAGCAAAAATGAAAGCTAATGCTTTTTACGCTATACACAAACCATCACACCAGTTTTGGATAAAAATAGTAGCTGGGTACAACAAAAAGTGTTTCGATGAACACTTGCAATAAGCCACAATCCAAACAACAAACGACTAGTCATTTAATATCTTTTTAAGAACAAAGTGCTTATGACACATTGCAGCACATGTATTGCAGGAAATGGTAAGAATCAGTAATGGTACACACCTACTATCACACAATTCGACTTGCTCAACAATGAATTCAGTGGCAGACACACAATTTCCCACCAATTTAACCAATACTCTTAATACATCCATACTTTTGGAACCAAACTAAACAATCTTGTTCTCGAGAAAGACATGATTTGGAACTATAAGACTAAAGATTGTTACTATCTCTGTCACAATCTACAAAGTTCCAGTGCAATATTTCCAAAAATTTGAGAACTTTGATGTAGCCATGTGATATAACTTACTTATAGAAAAGATCATTTCTTTATTGTTATATTAACATAAAACACATTAAACTCAAGGAAAGTTTTACTGGAATAGACCCGGTTGTCATCTCCACATTAGCTATTTTAAACAAAATGTACAATCAAATTAACCTTTTTGTTCAATTATAATGTGATACGCATCAATTCTTATGCTATAGTATTAAAACTACAAGTAATAGAATCATCACACAATTAACAATAATGATAATCACAGGATCTGTTGAAAGATCGAACCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCGCGAGAAGATGTGAAGACATCTTCGATACCAGCAAACTGAAGGACCTTCTTG</genome_strand>
        <mrna_strand>AGAAAATTCATATGTATTGTTGAAAACAAACCAAAACAAGGAACATTATGTTTTGCAAGTCTGCGGAAAACATCCCTCAGAAACAGAACAAAATTTAGAATACTAACGTATCAGAGAGAAGAGAAAACTACTAGAACAAAACAACAG-A-G-CTCATAACACATCT--AATGAATCAAGCCTCAACCCGCTCAGGTGCTGCCTCTTCGGTGGCGTAGACAATAACCTTATTGGCAGGTTTTGCCAAGATATCAAAGTACTCTTGGAATGGAGATTTGGTGAAACGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAACCCGTAAGTCTTCATTAAACAATCAAAG....................................................................................................................................................................................................................................................................G-TA-G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCACGAGAAGATGTGAACACATCTTCAATACCAGCAAACTGAAGGACCTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340214" ref_strand="+" ref_description="SGN-E340214 [cTOF-2-D3]">
      <seq>taagaaggttcttcagtttgctggtattgaagatgtcttcacatcttctcgtggatccaccaaaacccttggaaacttcgttaaggcgacatttgattgtttaatgaagacctacgggttcctgaccccagatttctggaaagagactcgcttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtctacgccaccgaagaggcagcacctgagagggttgaggcttgattcgttagatgttatgtgctctgttgttttgttctagtagttttctttattatgaaatgttagtattctaaattttgacttctgttcttgagggatattttccgcagactttgaaaggataatgttccttgttttggtttgttttcaacaatatatatgaagtttcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23903" stop="25717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24202" g_stop="24286" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25413" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="419" r_length="334" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="439"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E340214" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24202" e_stop="24286"/>
          <exon e_start="25077" e_stop="25413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTC-TT-CTCTGATACGTTAGTATTCTAAATTTTG--TTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGA</genome_strand>
        <mrna_strand>TAAGAAGGTTCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGTGGATCCACCAAAACCCTTGGAAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACATTTGATTGTTTAATGAAGACCTACGGGTTCCTGACCCCAGATTTCTGGAAAGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTCTACGCCACCGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTC--GTTAGATGT--TAT--GTGC-TCTGTTGTTTTGTTCTAGTAGTTTTCTTTATTATGAAATGTTAGTATTCTAAATTTTGACTTCTGTTCTTGAGGGATATTTTCCGCAGACTTTGAAAGGATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATATATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355047" ref_strand="+" ref_description="SGN-E355047 [cTOS-19-P14]">
      <seq>aagaaggtccttcagtttgctggtattgaagatgtcttcacatcttctcgcggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttagatgtgatatgagtcagtagttctcttctctgatacgttagtattctaaattttgttctgtttctgagggatattttccgcagacttgcaaaacataatggtccttggtttggtttggtttccaccatacatatgaatttgatctcatggttttgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23903" stop="25736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24203" g_stop="24286" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25436" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="426" r_length="342" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E355047" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.042" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24203" e_stop="24286"/>
          <exon e_start="25077" e_stop="25436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTCATGTTTTTGCTTG</genome_strand>
        <mrna_strand>AAGAAGGTCCTTCAGTTTGCTGGTATTGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGA----------------G-TC-AGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGGTCCTTGGTTTGGTTTGGTTTCCACCATACATATGAATTTGATCTCATGGTTTTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586184" ref_strand="+" ref_description="SGN-E586184 [60235]">
      <seq>cttctcgtggatccaccaaaacccttggcaacttcgttaaggctacctttgattgtttaatgaagacttacggattcctgaccccagacttctggaaagagactcgtttcaccaaatctcctttccaaggagtactttgatatcttggcaaaaccagcgaataaagttattgtctacgccaccgaagaggcagcagcgcctgagagggttgaggcttgattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="23946" stop="25554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24246" g_stop="24286" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25077" g_stop="25254" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="223" r_length="182" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E586184" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24246" e_stop="24286"/>
          <exon e_start="25077" e_stop="25254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAGGTTCGATCTTTCAACAGATCCTGTGATTATCATTATTGTTAATTGTGTGATGATTCTATTACTTGTAGTTTTAATACTATAGCATAAGAATTGATGCGTATCACATTATAATTGAACAAAAAGGTTAATTTGATTGTACATTTTGTTTAAAATAGCTAATGTGGAGATGACAACCGGGTCTATTCCAGTAAAACTTTCCTTGAGTTTAATGTGTTTTATGTTAATATAACAATAAAGAAATGATCTTTTCTATAAGTAAGTTATATCACATGGCTACATCAAAGTTCTCAAATTTTTGGAAATATTGCACTGGAACTTTGTAGATTGTGACAGAGATAGTAACAATCTTTAGTCTTATAGTTCCAAATCATGTCTTTCTCGAGAACAAGATTGTTTAGTTTGGTTCCAAAAGTATGGATGTATTAAGAGTATTGGTTAAATTGGTGGGAAATTGTGTGTCTGCCACTGAATTCATTGTTGAGCAAGTCGAATTGTGTGATAGTAGGTGTGTACCATTACTGATTCTTACCATTTCCTGCAATACATGTGCTGCAATGTGTCATAAGCACTTTGTTCTTAAAAAGATATTAAATGACTAGTCGTTTGTTGTTTGGATTGTGGCTTATTGCAAGTGTTCATCGAAACACTTTTTGTTGTACCCAGCTACTATTTTTATCCAAAACTGGTGTGATGGTTTGTGTATAGCGTAAAAAGCATTAGCTTTCATTTTTGCTCATTTACAATATATTTGCTGTGCTTGAGTCTGATGCCACTCATTTTATACATGTAGGCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAA-GAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCA---CCTGAGAGGGTTGAGGCTTGATTCA</genome_strand>
        <mrna_strand>CTTCTCGTGGATCCACCAAAACCCTTGGCAACTTCGTTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTTGATTGTTTAATGAAGACTTACGGATTCCTGACCCCAGACTTCTGGAAAGAGACTCGTTTCACCAAATCTCCTTTCCAAGGAGTACTTTGATATCTTGGCAAAACCAGCGAATAAAGTTATTGTCTACGCCACCGAAGAGGCAGCAGCGCCTGAGAGGGTTGAGGCTTGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218871" ref_strand="+" ref_description="SGN-E218871 [cLEL-18-F13](-)">
      <seq>cttcgttaaggctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttagatgtgatatgagtcagtagttctcttctctgatacgttagtattctaaattttgttctgtttctgagggatattttccgcagacttgcaaaacataatgttccttgttttggtttgtttccaacaatacatatgaatttgatctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="24768" stop="25724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25077" g_stop="25423" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="339" r_length="329" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="356"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E218871" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25077" e_stop="25423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTC</genome_strand>
        <mrna_strand>GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGA----------------G-TC-AGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTCCAACAATACATATGAATTTGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230204" ref_strand="+" ref_description="SGN-E230204 [cLEL-33-M18](-)">
      <seq>gctacctttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttagatgtgatatgagtcagtagttctcttctctgatacgttagtattctaaattttgttctgtttctgagggatattttccgcagacttgcaaaacataatgttccttgttttggtttgttttcaacaatacatatgaatttgatctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="24777" stop="25724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25077" g_stop="25423" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="330" polyA_stop="346"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E230204" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25077" e_stop="25423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTC</genome_strand>
        <mrna_strand>GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGA----------------G-TC-AGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229981" ref_strand="+" ref_description="SGN-E229981 [cLEL-33-M18](-)">
      <seq>cctttgattgttaaataaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttagatgtgatatgagtcagtagttctcttctctgatacgttagtattctaaattttgttctgtttctgagggatattttccgcagacttgcaaaacataatgttccttgttttggtttgttttcaacaatacatatgaatttgatctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="24781" stop="25724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25081" g_stop="25423" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="342"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E229981" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25081" e_stop="25423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTC</genome_strand>
        <mrna_strand>CCTTTGATTGTTAAATAAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGA----------------G-TC-AGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341890" ref_strand="+" ref_description="SGN-E341890 [cTOF-9-C17]">
      <seq>tttgattgtttaatgaagacttacgggttcctgaccccagacttctggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttagatgtgatatgagtcagtagttctcttctctgatacgttagtattctaaattttgttctgtttctgagggatattttccgcagacttgcaaaacataatgttccttgttttggtttgttttcaacaatacatatgaatttgatctcatgtttttgcttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="24783" stop="25737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25083" g_stop="25436" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="337" polyA_stop="384"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E341890" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25083" e_stop="25436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTCATGTTTTTGCTTG</genome_strand>
        <mrna_strand>TTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGA----------------G-TC-AGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTCATGTTTTTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222069" ref_strand="+" ref_description="SGN-E222069 [cLEL-36-E18](-)">
      <seq>ttgtttaatgaagacttccgggttcctgaccccagacttctggaaaaagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttaaatgtgatatgagtcagtagttctcttctctgatacgttagtattctaaattttgttctgtttctgagggatattttccgcagacttgcaaaacataatgttccttgttttggtttgtcttcaacaatacatatgaatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="24788" stop="25719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25088" g_stop="25419" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E222069" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.057" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25088" e_stop="25419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGA</genome_strand>
        <mrna_strand>TTGTTTAATGAAGACTTCCGGGTTCCTGACCCCAGACTTCTGGAAAAAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAAATGTGATATGA----------------G-TC-AGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTCTTCAACAATACATATGAATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234362" ref_strand="+" ref_description="SGN-E234362 [cLEL-8-G5](-)">
      <seq>ggaaagagactcggttcaccaaatctccattccaagagtactttgatatcttggcaaaacctgccaataaggttattgtgtacgccactgaagaggcagcacctgagagggttgaggcttgattcattttaaatgtgatatgagtcagtagttctcttctctgatacgttagtattctaaattttgttctgtttctaagggatattttccgcagacttgcaaaacataatgttccttgttttggtttgttttcccccatacatatgaatttgatctcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="24829" stop="25724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25129" g_stop="25423" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="278" polyA_stop="299"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E234362" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25129" e_stop="25423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTC</genome_strand>
        <mrna_strand>GGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAAATGTGATATGA----------------G-TC-AGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTAAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCCCCCATACATATGAATTTGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604756" ref_strand="+" ref_description="SGN-E604756 [74895]">
      <seq>aagacggaataatttgaagaaacggtggaaattataagagatggctaacaatgcggcggcttgtgcagaaagggcaactagtgatatgctgattgggccagactgggctataaacattgagctttgtgatatcatcaacatgaatcctggacaagcaaaggacgctcttaagattatcaagaaacgcttggggagtaaaaatccgaaaatacagctccttacactatttgttcttgagactctgagcaaaaattgtggagagaatgtatttcagcaaattgtggagcgtgagattttacgagacatggtcaaaattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="31713" stop="36465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32007" g_stop="32156" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32157" i_stop="35417" i_length="3261">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35418" g_stop="35496" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="229" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35497" i_stop="36076" i_length="580">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36077" g_stop="36165" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="318" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E604756" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32007" e_stop="32156"/>
          <exon e_start="35418" e_stop="35496"/>
          <exon e_start="36077" e_stop="36165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGAGAACAATTTGAAGAAACAGTGGAAACTAGAAGAGATGGCTAACAATGCGGCGGCTTGTGCAGAAAGGGCAACTAGTGATATGCTGATTGGGCCAGACTGGGCTATAAACATTGAGCTTTGTGATATCATCAACATGAATCCTGGGTAACTTTCTTGCTTATATGTTTATGTGGTATTTTGTAATCCTAGGTAAAGATTGCTTGAAATGACTGTGTAGCTTATTTTGATATCTTGAGAAATTCATCATCCACCTTTTAAGACCAAATCTCAAGTGATAACTTGAGAAATTCATCACTGATACTGACTCATACAAGGATGGGTTATCATTACCGTTTTGCGGGCTGTTGATGGATATGAGACGATTGTTGGTCTTATTTTAATTATTTTAGCTCGTATTTGTTGGGTACCAAGTGACATGACTGATAGGAATATATCGCAAGTTTCAAAACTTCTGGATCAACAAATTCACATTACTGATGGTGGTTGTTCCATAGAGTTAAGTGACAAGTGTGTAAACCAGGATGTTTATGTTGCTTTTCCTGAAGTGTTTGTGGTGGAGTCATCTGTTGAATCTAAACATACTGGTTTACACACTTGCTACATAATTCTTGGGACGACCGCTATCAGGATTGTGAAGCTGTTGTTGTTGAACTTTTGGGACTTGAAGTATACCTTTATCCCTTATGTCACTTTCATAAGGAGTATCCAGCAAGAATGAGCTGAAGTCATTAAAATAAGACACAACAGTCGTCTCATATCAATCAAGTCACGTAAAAGGCAATGATAACTCATCTTTGTATGCATCAATATAACATGATGAGTTTCTCATGATATCACTTGGGATTTGGTCTTCCAAGGTGGATGCTGAGTTGAGTATAGTCATGTATTTTGCATGCTCAATTTTTTTTCCACCATTGGCAAAATCATGCTGAGTTTGGAAAAGAAACATCTGTATTATACTCCAATCTGGCAGTTGTGGTGGACTAGCTGCATAACTGAAGTTGTGAAATGACAAGGCACAGTCAGGATATGCAGTGGTGAAGGCCTAGCCTGTCAGTTCATTAGGTTGAAACAATCCCCCAATAGTGGCAATCGTTTCACGATTCTCTGTAGGGGGGGGGGGGGAAGTTGCTCCAAATCCATAGGAGAAATCCTGAAAGCAACTGCCTAGGAAACATCTCCATTATGATTTTCTTAATTTCTATTTTAAAATCTTACTAAACAAAGAGAAATAAGTTAAGAGTGAATGATGATCATAAGGTAAGGAGATAGGTGGAATGAAGGAAATTGGTCAAAGGAAAACCAGTTATAGAACTTGAATAGATCATCTCTTACCAAGAAACAAAGCTAGTTCATCACTCTGTTAGTTATGTTGTGCTTGAAGTGCTATGGAATAGTTAAAAGTTAATACTACTGGACCAAGATTTCTCTTTCTTCATCCTCAATGCTAGTCAATCAATCCGTAATTGCATTATGGGATTGTCTTACATAGACATCTTCAGTTTCTGCAATTTCTCTGAGCCTGCAACAGAGCAGCAAACTCTCACTACCCTGGGCTTGACCCGAGACACTCCAAACAGATTAGAAAGAGTGACCAGACTTTCTGTGCTTGGTTGCAGTGGACGAACAAGTGATTGATGCTTTTCAAGTAGTTCTCACAAAAGAAGCCTCTTCTTTGAAGTTTATCACGAGTCAAAGCGGCACCTTTAGATCTTAGGTGCTAGCCTGCTACTCATTCAACACAAACAACTTTAAGAGGTGCTTTAGTTTTCCAGTTCATTTTCCAAGGCGGGCATGTTTCTTTCAAGACAATTATAGCAGCTTTTAACAGAGATCCCACCAACAGCTAGCTGGACAAGTGTGTTGTGACTTCATGTATCCAAAGAAACAGGATGTAGAAATTCTAGCTCCTAATTCACCAATCATTAAGAGTTTTCCCGAACTGCAGTGTCATCCTGTAATCGATATCTTTCAGCTGCGATGCTGTCGTTATTACAACGAGATTAATATATTAGGGAACTCATTTTTGTGCAACCCAATGTCCTACCAATAATACAACCAAAATCTCATGTGATACATTTACCCATTCTTAGCTTAGTATGCATATGAAATTCTCTTTAATAACTGTGAATGTGCTTCCAGATGGTATATTATTAGGCATGAGTGAAGCTGGAGTCCAGTAATTTTTGTTCCATTATTTAATGATCAGATACATCCCTCAGGCCTCGACTCCCCTTTTTGCTATGATGTAGTTTTGAAAACCATTTAAAAAGCTATACTTTGTTATGGAGCTTGACATACTTTACTCCCAACTCTCCACCTTTATTGATCACTACATTTTTCCATCTAACCATATGCAGCTTTCTCTGCTAGAGTTTCCGTTGCTCATAAGTTTATGAAACTATTTTTCTAATGTAGAAGAAAGGGGAATGAGCGACATCAATAGGTGAGCATATGATCAAAAAAAATATTCACCTTAGTGAGTCTTCCACCAAAGGATAAATATTGTTTCTGCCATGGAGCTATCTTTTTCCACATCAAGAGTTCCTTGCCGGATCCCATTTTCTTTCAATCTAGAACCAAAAAAAAAAAGGCTCAAATAAGCAGTAGGGAATGACTGAACTTTGCATCCAAGATTATTGGAAAGCTCCAAAATATTGTCTTAGCATTTAAAATAAAAACACTTCTTTTGGCCAAGTTAATTTTAGGCCACAAACAGCTTCAAAAGCCAATATTGTAATTCGGAGGTGCAACATTTGGTCTCTTTCAGCATCAAAATAATGATGTGTCATGCAAATATGTGCCATCTCCAAGCTCGTATCACTGTGTCCATCTATATAAAAGCTCTTGAGTTATTTATGACTTCCATCCTCTTTAAGAGTTAAATTTAACACTTCCATCACATTCGCAACGAGATAAGGAGAGTGGATTTCCTTGTTTTAATCCTTTTTGGCTTAAAAGAACCCTTGTGGTTTTAGATTTAACAACTTATTTATTAATGAAATTGTGGGAAGTATTTCACCGTGACTGTTAGTTGTCTATCTTCTTTTCACCTGAAAATTATGTACCTGGGGAAGTGGAAAAGTGAAAAAGGAAAAAGTAAGTCATGCTTATGGGTAGTAAAGTCTCTCAAAGAAATTTCAGAGCATGATAGGCAGTAAAGTAGGCAAACATGTATAAAGTTGGATGTTGCCTTGCTGGCTGATACAAGTGTAAGATGCACTTCTGTTGCATTTTCTTTTATTTGAAATGGTATTCTTCATTGTCAGTTCATGTTCCATCTAGATTTTCTGAAATTGTTTGTTGTCCTGTAGTAAAATTTTAAATTATCCTAGTTGGTCTTGTCAAGTTGAGCTTTTCTATAGTTGATTTTTTACCAGCTTACTGATTAAATTCTAATTTCAGACAAGCAAAGGATGCTCTTAAGATTATCAAGAAACGCTTGGGGAGTAAAAATCCAAAAATACAGCTCCTTACACTATTCGTAAGTACATTTCACTTGCCTTACCATTACTAGATTTCATCTTTTTGTTTAGGCTACATAGAGTTAGTTTTGCAATTATGATTAAAAATACAGGTCTAAAATTTGAGCGTCTCAAATCTTAGTAATCCACCTTTTGTTTGTACAAACGAATATGACATGCTAAGGGTCTCAACTTTCTGTCTTTCTGATATATCGTCTGTGAAACTGGTATAACAGTTAGAGGTGAGTATAATTATCAAACTTTAGCTAACTGGTGAACTATGTTGAAATATCTCCTCTGTGCTTCAGCACATCCATAGTGTTGGCATTTTGCAGTTAGGTCAATAACAATTGGCAATAGACATTCACTTCATCAACTTCATCAACACATCATATTTTGACTGCTCGTGTCCCAAGACACATTTGAGCTATCAGTAATTCAATGAATATCCAAAGAGTAGATTTTTCATGTGCATATAACAGTTCTAAATATGGCTCTTGTCATGGGATTTGCCCTTTGAAGTTGCAGAAGATTTTATAAAGAGAAACTTGTATTGAAGATTATTTGCTAATTCTTTCTTTCTACAAATTATTTTTTCAGGTTCTTGAGACTCTGAGCAAAAATTGTGGAGAGAATGTATTTCAGCAAATTGTGGAGCGTGAGATTTTACGAGACATGGTCAAAATTGT</genome_strand>
        <mrna_strand>AAGACGGAATAATTTGAAGAAACGGTGGAAATTATAAGAGATGGCTAACAATGCGGCGGCTTGTGCAGAAAGGGCAACTAGTGATATGCTGATTGGGCCAGACTGGGCTATAAACATTGAGCTTTGTGATATCATCAACATGAATCCTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCAAAGGACGCTCTTAAGATTATCAAGAAACGCTTGGGGAGTAAAAATCCGAAAATACAGCTCCTTACACTATTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAGACTCTGAGCAAAAATTGTGGAGAGAATGTATTTCAGCAAATTGTGGAGCGTGAGATTTTACGAGACATGGTCAAAATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454043" ref_strand="+" ref_description="SGN-E454043 [cSTS-21-P18]">
      <seq>aaaaaacccacacacttaaatccaatctctctctctctctctgtgcgtgtattttagagggagatcaaagacggaataatttgaagaaacggtggaaattataagagatggctaacaatgcggcggcttgtgcagaaagggcaactagtgatatgctgattgggccagactgggctataaacattgagctttgtgatatcatcaacatgaatcctggacaagcaaaggacgctcttaagattatcaagaaacgcttggggagtaaaaatccgaaaatacagctccttacactatttgttcttgagactctgagcaaaaattgtggagagaatgtatttcagcaaattgtggagcgtgagattttacgagacatggtcaaaattgtgaagaagaagcctgatttaaatgtgcgggagaagattttgattttgatagattcatggcaagaagctttgggagggccaggggggagatttccccagtattacgctgcatataatgagctgaaggccgcaggtgtagagtttccacctcgagaggaaaacagtgtacctttatttacaccaccacaaactcatccaatagtccacatgccttcagcttatgaggaggctgcagttgaggcctctcttgagtctgatccctctggactcagtgttgcagagattcaaagtgctgaggggttatcagatgtcttgacngagatgcttggtgccttggatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="31217" stop="42336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32010" g_stop="32156" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="217" r_length="146" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32157" i_stop="35417" i_length="3261">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35418" g_stop="35496" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="296" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35497" i_stop="36076" i_length="580">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36077" g_stop="36175" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="395" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36176" i_stop="36263" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36264" g_stop="36377" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="509" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36378" i_stop="41173" i_length="4796">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41174" g_stop="41319" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="655" r_length="146" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41320" i_stop="41967" i_length="648">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41968" g_stop="42036" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="724" r_length="69" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E454043" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32010" e_stop="32156"/>
          <exon e_start="35418" e_stop="35496"/>
          <exon e_start="36077" e_stop="36175"/>
          <exon e_start="36264" e_stop="36377"/>
          <exon e_start="41174" e_stop="41319"/>
          <exon e_start="41968" e_stop="42036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAACAATTTGAAGAAACAGTGGAAACTAGAAGAGATGGCTAACAATGCGGCGGCTTGTGCAGAAAGGGCAACTAGTGATATGCTGATTGGGCCAGACTGGGCTATAAACATTGAGCTTTGTGATATCATCAACATGAATCCTGGGTAACTTTCTTGCTTATATGTTTATGTGGTATTTTGTAATCCTAGGTAAAGATTGCTTGAAATGACTGTGTAGCTTATTTTGATATCTTGAGAAATTCATCATCCACCTTTTAAGACCAAATCTCAAGTGATAACTTGAGAAATTCATCACTGATACTGACTCATACAAGGATGGGTTATCATTACCGTTTTGCGGGCTGTTGATGGATATGAGACGATTGTTGGTCTTATTTTAATTATTTTAGCTCGTATTTGTTGGGTACCAAGTGACATGACTGATAGGAATATATCGCAAGTTTCAAAACTTCTGGATCAACAAATTCACATTACTGATGGTGGTTGTTCCATAGAGTTAAGTGACAAGTGTGTAAACCAGGATGTTTATGTTGCTTTTCCTGAAGTGTTTGTGGTGGAGTCATCTGTTGAATCTAAACATACTGGTTTACACACTTGCTACATAATTCTTGGGACGACCGCTATCAGGATTGTGAAGCTGTTGTTGTTGAACTTTTGGGACTTGAAGTATACCTTTATCCCTTATGTCACTTTCATAAGGAGTATCCAGCAAGAATGAGCTGAAGTCATTAAAATAAGACACAACAGTCGTCTCATATCAATCAAGTCACGTAAAAGGCAATGATAACTCATCTTTGTATGCATCAATATAACATGATGAGTTTCTCATGATATCACTTGGGATTTGGTCTTCCAAGGTGGATGCTGAGTTGAGTATAGTCATGTATTTTGCATGCTCAATTTTTTTTCCACCATTGGCAAAATCATGCTGAGTTTGGAAAAGAAACATCTGTATTATACTCCAATCTGGCAGTTGTGGTGGACTAGCTGCATAACTGAAGTTGTGAAATGACAAGGCACAGTCAGGATATGCAGTGGTGAAGGCCTAGCCTGTCAGTTCATTAGGTTGAAACAATCCCCCAATAGTGGCAATCGTTTCACGATTCTCTGTAGGGGGGGGGGGGGAAGTTGCTCCAAATCCATAGGAGAAATCCTGAAAGCAACTGCCTAGGAAACATCTCCATTATGATTTTCTTAATTTCTATTTTAAAATCTTACTAAACAAAGAGAAATAAGTTAAGAGTGAATGATGATCATAAGGTAAGGAGATAGGTGGAATGAAGGAAATTGGTCAAAGGAAAACCAGTTATAGAACTTGAATAGATCATCTCTTACCAAGAAACAAAGCTAGTTCATCACTCTGTTAGTTATGTTGTGCTTGAAGTGCTATGGAATAGTTAAAAGTTAATACTACTGGACCAAGATTTCTCTTTCTTCATCCTCAATGCTAGTCAATCAATCCGTAATTGCATTATGGGATTGTCTTACATAGACATCTTCAGTTTCTGCAATTTCTCTGAGCCTGCAACAGAGCAGCAAACTCTCACTACCCTGGGCTTGACCCGAGACACTCCAAACAGATTAGAAAGAGTGACCAGACTTTCTGTGCTTGGTTGCAGTGGACGAACAAGTGATTGATGCTTTTCAAGTAGTTCTCACAAAAGAAGCCTCTTCTTTGAAGTTTATCACGAGTCAAAGCGGCACCTTTAGATCTTAGGTGCTAGCCTGCTACTCATTCAACACAAACAACTTTAAGAGGTGCTTTAGTTTTCCAGTTCATTTTCCAAGGCGGGCATGTTTCTTTCAAGACAATTATAGCAGCTTTTAACAGAGATCCCACCAACAGCTAGCTGGACAAGTGTGTTGTGACTTCATGTATCCAAAGAAACAGGATGTAGAAATTCTAGCTCCTAATTCACCAATCATTAAGAGTTTTCCCGAACTGCAGTGTCATCCTGTAATCGATATCTTTCAGCTGCGATGCTGTCGTTATTACAACGAGATTAATATATTAGGGAACTCATTTTTGTGCAACCCAATGTCCTACCAATAATACAACCAAAATCTCATGTGATACATTTACCCATTCTTAGCTTAGTATGCATATGAAATTCTCTTTAATAACTGTGAATGTGCTTCCAGATGGTATATTATTAGGCATGAGTGAAGCTGGAGTCCAGTAATTTTTGTTCCATTATTTAATGATCAGATACATCCCTCAGGCCTCGACTCCCCTTTTTGCTATGATGTAGTTTTGAAAACCATTTAAAAAGCTATACTTTGTTATGGAGCTTGACATACTTTACTCCCAACTCTCCACCTTTATTGATCACTACATTTTTCCATCTAACCATATGCAGCTTTCTCTGCTAGAGTTTCCGTTGCTCATAAGTTTATGAAACTATTTTTCTAATGTAGAAGAAAGGGGAATGAGCGACATCAATAGGTGAGCATATGATCAAAAAAAATATTCACCTTAGTGAGTCTTCCACCAAAGGATAAATATTGTTTCTGCCATGGAGCTATCTTTTTCCACATCAAGAGTTCCTTGCCGGATCCCATTTTCTTTCAATCTAGAACCAAAAAAAAAAAGGCTCAAATAAGCAGTAGGGAATGACTGAACTTTGCATCCAAGATTATTGGAAAGCTCCAAAATATTGTCTTAGCATTTAAAATAAAAACACTTCTTTTGGCCAAGTTAATTTTAGGCCACAAACAGCTTCAAAAGCCAATATTGTAATTCGGAGGTGCAACATTTGGTCTCTTTCAGCATCAAAATAATGATGTGTCATGCAAATATGTGCCATCTCCAAGCTCGTATCACTGTGTCCATCTATATAAAAGCTCTTGAGTTATTTATGACTTCCATCCTCTTTAAGAGTTAAATTTAACACTTCCATCACATTCGCAACGAGATAAGGAGAGTGGATTTCCTTGTTTTAATCCTTTTTGGCTTAAAAGAACCCTTGTGGTTTTAGATTTAACAACTTATTTATTAATGAAATTGTGGGAAGTATTTCACCGTGACTGTTAGTTGTCTATCTTCTTTTCACCTGAAAATTATGTACCTGGGGAAGTGGAAAAGTGAAAAAGGAAAAAGTAAGTCATGCTTATGGGTAGTAAAGTCTCTCAAAGAAATTTCAGAGCATGATAGGCAGTAAAGTAGGCAAACATGTATAAAGTTGGATGTTGCCTTGCTGGCTGATACAAGTGTAAGATGCACTTCTGTTGCATTTTCTTTTATTTGAAATGGTATTCTTCATTGTCAGTTCATGTTCCATCTAGATTTTCTGAAATTGTTTGTTGTCCTGTAGTAAAATTTTAAATTATCCTAGTTGGTCTTGTCAAGTTGAGCTTTTCTATAGTTGATTTTTTACCAGCTTACTGATTAAATTCTAATTTCAGACAAGCAAAGGATGCTCTTAAGATTATCAAGAAACGCTTGGGGAGTAAAAATCCAAAAATACAGCTCCTTACACTATTCGTAAGTACATTTCACTTGCCTTACCATTACTAGATTTCATCTTTTTGTTTAGGCTACATAGAGTTAGTTTTGCAATTATGATTAAAAATACAGGTCTAAAATTTGAGCGTCTCAAATCTTAGTAATCCACCTTTTGTTTGTACAAACGAATATGACATGCTAAGGGTCTCAACTTTCTGTCTTTCTGATATATCGTCTGTGAAACTGGTATAACAGTTAGAGGTGAGTATAATTATCAAACTTTAGCTAACTGGTGAACTATGTTGAAATATCTCCTCTGTGCTTCAGCACATCCATAGTGTTGGCATTTTGCAGTTAGGTCAATAACAATTGGCAATAGACATTCACTTCATCAACTTCATCAACACATCATATTTTGACTGCTCGTGTCCCAAGACACATTTGAGCTATCAGTAATTCAATGAATATCCAAAGAGTAGATTTTTCATGTGCATATAACAGTTCTAAATATGGCTCTTGTCATGGGATTTGCCCTTTGAAGTTGCAGAAGATTTTATAAAGAGAAACTTGTATTGAAGATTATTTGCTAATTCTTTCTTTCTACAAATTATTTTTTCAGGTTCTTGAGACTCTGAGCAAAAATTGTGGAGAGAATGTATTTCAGCAAATTGTGGAGCGTGAGATTTTACGAGACATGGTCAAAATTGTGAAGAAGAAGGTAAACAACACCTAATATACATGGTTTCCTTAATTTGTTAAACCTATTTGAGATCTCTAATAACTAGGCTTATTGTTTTTGATTACAGCCTGATTTAAATGTGAGGGAGAAGATTTTGATTTTGATAGATTCATGGCAAGAAGCTTTGGGAGGGCCAGGGGGACGATTTCCCCAGTATTACGCTGCATATAATGAGCTGAAGGTGATTTATTTGTGTCTCTATTATTATGCTCTTGCACCTGTCAGTCTTTAAGTGAAAGTCTGTTCAACGTCGTCCTTGGTTGATTTTCCCCTTACTGTAGCACTTGCTATAGCAAAGGTTCATGTTTTTTCAGTTGCAGTTGGTAATAATGACTTAGATATTTTATCACATAAAAGAAATAAATTCCTGGATATAGCTGAATCAATTCCTCTCTTACTTTCTCAATAAAAAAGATTATGGTGTAACCAAAAGTGGCTAAGCAAGTCTAGGTGTCAGAAATGATCTGTTAGATAAGAAAGTGAGTATGGTTTTCCTGATATCAGTTCACATTGACCTCTATTTAGATTCTTTTGAACTGGATAAAATGAACCGAAGGGAATGGAAAATGAACCAAAGATAGATGAATACAATAGAAAGAAGAGAGTTCCTTCCTTTTTTTTTTTTTGAGAAAGGTAACATTCGTATGTATTGACAAAAACCAGTACATGGGTTTTAATGAAAACCATAATTACAACTTATCAACAAAACAAGATATCTGAATCTAAATTCTAAATAGAGCCAAGGATCTCAATAATTGACTCAGTATCCTCTAAGTACAACTGTTTACACCAGAAACAAAAAAGTTTGATACAGTTCAATTTGATCTTCTGGAGATCACAACTTTTGCTCTCAAAACATCTAGCGTTTCTCTCTCTCCACTCTCCAGACTGTCCACCAGATACAGGCTGGGACAATCTTCCAACTATCTCTGTCTGAAGCTCCCCCACCTACCTCTTCCCAACTGTAGAGAAAGGTGGGTGATCCCGTTAGGCATAGTCCAAATAACACCCCTGAGGCTGATAAAAATCCTCCAACGTTGGGTTGTTATCCTGCACTGTAAAAATAGATGGCCAACTGTCTCAACCTCTTCTCCACACAAATAGCATCTCGAGCACACAGAGAACTTCTTCTTCTTGAGATTATCTTTTGTCAGGACTACTTCTCTTGCCAGTAACCAAGTAAAACATGCCACCTTGAAAGGGGTTTTTGTTTTCCAGATCTGTTTATATGGCCAATTTGATGGTTGTTGGCCACCTTTGTTCAAAAACTTGTATGCTGAGTTCACCTTTAACATGCCTTTGCTGTCTTTGTTCCACCATAATCTATCAACTTCATTCTTTGTCCCTTTGATCTCTGCGAGAGCTTTGAAAAATTCTGTCACAGTTTCAATTTTCCCAGTCATTAAAATTTCTTCTTAAATGGATGTTCCATCCTTGATGTGTCCAACTGTCAGCTACACTCATTTGTTGATGTATTGCCAAAGCATACAGTTCAGGAAAAGATTTTTTAAACTAGCATGTCCCAGCCATTTGTCCTCCCAGAATGAATGAGGTCTTACTTCGATTGCCTACCCTCACAGTTGTGTTATTTCTCAAACAAGGCCACATGATTCTGATAGACCTCCATAGACTTACACCATAGGGTGTTGATACCTCATTTGTCATCCATTTGTCCTCATCTCCATATTTAGCTTTAGTTGCCTTCCTTTTAGGTGCAGAGTATAACTGGAGAAGAATAATTTTTACCTCTACATTGCCCTGTTGAATAATTAAGCGGTCCTTAGTAGAAACTAGTTTCTCTTGCCAAACCAAACAAGTTAAATGAATTCAACAAAAGAAGTGCTAACCAACTATTGATCATGGAAGTTCTGCAGAATTTCTGTTTATGAGACTGCTACAGCCTAATTGATGGATTCAACCTCATTTTATCAATATATGTTGCCTTTGGCTTCCGTTTGCTTTCCCACTCGTTATTTCCTAAATGGAGAGTACTTCCCTCCAATATTATTTTGTCTGTAAATTAGTTAACTGATACTAGCTTCAGCTCAAAAGTTTTGGCAAAGACTTCCTGAGATGATAGTTATATTTTTCTTTCTGTTGTCAACTTCATAATTGCAAAAATATGTTTAAGAGCATTAACGTTTGAGTCCTCAAAACATGTTTGATATACTCAGTTCAGTTATGGAATCAATCCTCACAACATGTATTTACAGTTATGGGGATCTAGCTAAATATAGATCATTATAGAGGCCTTTCTGGGAAGTATGCTTTTTCTACGTGGAGCATTAACATAAAATATTTAGCTCCTCTAATAGGAAAATAAAGAGGACAAGGTTTAACCTCACAGCACTAAGATGAATGCGTTGGTTCTGTGAATGTTCAGACATATGCAACTTATAGAGAGTTAGGACCACTTTTAGTAGGTTCAGACATATGCAAGTTATAGAGAGTTACTACCACTTTGAGAAGTACACATTATGCCAGTAAAAGACAGATTTGTTCTAATAACACATCAAGTGGACAAAAATTGGAAGTCCTGTTGATCTAGGATAACTTTTCTATGCAGTTTATATCTTCTTATATGCTACTCTTTTTACTGTTGTGCTGTGCATGCTTCTTTTTCTTTTAATTTTTTCGAAGTTCTCTTCATATACTAGTTGAAATTGCATATTGCACTTTTCTATGCGAGTGGTTTTCATTTTTCAGTAGATCTTTTAGAAATACCGCATGCCAATTAAGGTGTGTATTTTCAAATGTGTTATTGCAATTTTTTTTAAAATGTCAAGCTGCTTTTACGTGGATTGTCTTCCATACAGAATTCTGTGTGGGGTGTGCAGGTTAAACAAGCATCCTGGATGATACAGAATTTTGTCTTCCATAATAACTATGTAACCATACCACCCACAGTTTGTCCTTTTTCTTGCATAGGTTCCACAGCGGCTTCCATAATACTGCTATACCTTACATTGATGCTAAATATAACACAGAAACAACATAAATCTTTAAATTAATAGAGTGTCCTAAATTATTAAAAATTCCAAAATACCTTCTATTTCCTCTATACACAAGAAATTGTTTGACATCGTCATTGTTCCATTGTATAACCGTAGCTTCTGACATGTTTTTGTACCAGAGAGTTCTTTATATACGTGTTGCCTTTGTCCTGAGTTGTTGTGTTTTCTTAATCACCTCAACCTTTACAGTTCACCAACATTTTTGTTCTTTTCTTTTATATTTTTTTGGGTTTTTCTAATGTACAATATTAATGGCTGCACCATTGAATAAAAGAAAAGTACAATATTAATGGCTGCACTGTTTAATCATGCTATGGTAATTCTTGCTATGATCTTAGGGTTACTTCGAGTACGTTTTATAATTCACAACTCTTTTCCTAAGTTTTCTTATATGTTTCTTGTATAAGTTGATTGCTCATGATTTGTAGAACTTCTCTAATGAATGGAGGATACCATTTTGTATCATTATGTTTGAATTAATCCATTGTCACAGTTGCTCCATCGTATTGCATTTGTTTCTTTTGTAACCCTTTTCCTCTCCAATTAGGAAATCAAGATGGAAATGAGTTGTTTTAGATTTTACCGTGTATCACCTGAAGCCTTCATCTTCTTATGTAGACTAGCTTCTGGACACACGTGTCAATCAATACAATTTTCTTAAAATCACATGAATATTATTAACATGCCTGTTGTATAAAAAAAATCATAATTTGAAGGAAAAAAGGTGTAAACACCTTTAGCAAAATGTGAAGTATATCAACTGCTATACCATTGTAATTTGTTACATCAAAATTCTGTATGTTAAGATCACACTCCTATATATGGAGACTTAGTTACATTTTAAAACTAAGTATGATATGGTGGTGAAAATAATTTTTCCAAGAAATTAATATCAGACTTAACATGATTTGAGTAAAAGCATATAAGATTTCACACAGGCTATTGTAAAATTTTACACAAAAAAACTTGCTCATCGCCTCATCCATTGTGGATTGTCTGTCAATTTTCAGTAAAAAGCACAGAAGTTTCCAATTTATTATTGATTAACTCACGTTTAAATTAAAAGATTAGTCATAGAATCGACAAGAATACTTCTGGCAACTTAATTAGATTTGTACTTTTGTCCTCACTGGAACATTAAATTTAACTTCTCCTTGCTATTTTGTTGATATAATATGCACCATTTGTTAGCGACAAGGGTATATATGCGCCATTTTTTTAACGAGGGTATATCCGTTACGATGTTCTAAATCATAAAGTTTGAAGAGTATCTTTGCCCCTTTTCCATAAATGAAGTAAATAACCTCTGCTGCATGCATACATTCTCGTAGTTAGAACTTTTTAAAAAGATCTTTTGAACAGTTGCCAGTTCAAAAAAAAGAAGATCTGTTAATTAACAAATGATATATATACAGCAGTAACCAGTGTTACTATGGCTTTTGTGCCGGCCTCCATCCTAGTTCCCTGGCCTGCAAGAAGAGAATGCTACAATATTGTGTTGTCTAATATTGGTGTTTATAAATGTGTGCGACAAATTGGTTAACTTGAAGTTGAACGTTTTCTGGCTTCTATCTTGAACTATATTGTGACATGGTGTTTGTTCCAAGTTTAATCGAAGACTACTTAGCATTAATTGAATTTGGTTGGGAGTTTAAAACTTACCACAAATTACAGAAGATACAAAATATATGATGATTATACATTCTATATGCATATCTAACAGGGTATTGGAAAAGATTCTGAATGACTTGATTGTTAATGTCAATTTTTTTTTTTTTAAACATTGATGTTTAAGAGATAATGATTTATAAAGATACTACCATCAATCAACATTTAAAGGTTATTTTGTCATTCTGTCTTCCAACTTTTATACTTGATAATATTAGTTTTTATTAATTTGATTGATCACTGATCTAGATTCATTCAAATCTTCATATGTTTTCTTTAAAAATGAACATTGCAGGCTGCAGGTGTAGAGTTTCCACCTCGAGAGGAAAACAGTGTACCTTTATTTACACCACCACAAACCCATCCAATAGTCCACACGCCTTCCGCTTATGAGGAGGCTGCAGTTGAGGCCTCTCTTGAGTCTGATCCCTCTGGACTCAGGTATTGATTAACTTATTCTTTCCGTTTAGTACGGTTCATGCTCAAAGTGTTAGAATTCTGTTTATGAACATTTCACTTATTAAAGGACACTATTAAGATCTATATGGATATTGTTTATGTGCACCTTCCTCTTTTCAGTAAGTGCTTCACTATTGTTTATATGCACCACCTCTCTGTTTTAAAGGTCAATTAGTGTACCTTTATTGGACTCCCGAGTTTACTATCTAGAGATTGAAATTTTTGGTAGTACTTGTGGTATCCAGCATTTATGGCAACTTTGTTCTAGTGTAAGTGAAGTTTCTGATTCAAACAATGCATTGTTGGATGAAAAAGGATGGGTGGTCTTAGATAATCTTCCCCTCTTTAGAAAGCTTTTGGGGTTGAGGTCCATTTATCGTTGTGTCAGAGCAGGTCCCATCCTAATTCGTAGTTGATTAATTTTGGCACCCCATATTGAATTTCCCACGCCCCAGATGTCTATCCCTGGGCATGGGGTAGAGTGTTAAAGAGTTCCACATTGGATGAAAAAAGGATGGACGGTCTCCATGCATTATTGTCTTTGGACAATCCTCCCCTCTTGAGTAAGCAACATTTCTAAAGAACTGGTAATTTCAAGTAAGTGACATTTTTGGTATCCTGTCTTTTCAGTGTCGCGGAGATTCAAAGTGCCGAGGGGCTATCAGATGTCCTCACGGAGATGCTTGGTGCCTTGGATCC</genome_strand>
        <mrna_strand>CG-GAATAATTTGAAGAAACGGTGGAAATTATAAGAGATGGCTAACAATGCGGCGGCTTGTGCAGAAAGGGCAACTAGTGATATGCTGATTGGGCCAGACTGGGCTATAAACATTGAGCTTTGTGATATCATCAACATGAATCCTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCAAAGGACGCTCTTAAGATTATCAAGAAACGCTTGGGGAGTAAAAATCCGAAAATACAGCTCCTTACACTATTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAGACTCTGAGCAAAAATTGTGGAGAGAATGTATTTCAGCAAATTGTGGAGCGTGAGATTTTACGAGACATGGTCAAAATTGTGAAGAAGAAG........................................................................................CCTGATTTAAATGTGCGGGAGAAGATTTTGATTTTGATAGATTCATGGCAAGAAGCTTTGGGAGGGCCAGGGGGGAGATTTCCCCAGTATTACGCTGCATATAATGAGCTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAGGTGTAGAGTTTCCACCTCGAGAGGAAAACAGTGTACCTTTATTTACACCACCACAAACTCATCCAATAGTCCACATGCCTTCAGCTTATGAGGAGGCTGCAGTTGAGGCCTCTCTTGAGTCTGATCCCTCTGGACTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCAGAGATTCAAAGTGCTGAGGGGTTATCAGATGTCTTGACNGAGATGCTTGGTGCCTTGGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573063" ref_strand="+" ref_description="SGN-E573063 [32315]">
      <seq>cggcacgaggagaatgtatttcagcaaattgtggagcgtgagattttacgagacatggtcaaaattgtgaagaagaagcctgatttaaatgtgagggagaagattttgattttgatagattcatggcaagaagctttgggagggccaggggggagatttccccagtattacgctgcatataatgagctgaaggccgcaggtgtagagtttccacctcgagagtgaaaacagtgtacctttatttacaccaccacaaactcatccaatagtccacatgccttcagcttatgaagaggctgcagttgaggcctctcttgagtctgatccctctggactcagtgttgcagagattcaaagtgctgaggggttatcagatgtcttgacggagatgcttggtgccttggatccaaagaatcctcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="35805" stop="42352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36098" g_stop="36175" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36176" i_stop="36263" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36264" g_stop="36377" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="192" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36378" i_stop="41173" i_length="4796">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41174" g_stop="41319" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="339" r_length="147" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41320" i_stop="41967" i_length="648">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41968" g_stop="42049" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="421" r_length="82" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E573063" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36098" e_stop="36175"/>
          <exon e_start="36264" e_stop="36377"/>
          <exon e_start="41174" e_stop="41319"/>
          <exon e_start="41968" e_stop="42049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTGGAGAGAATGTATTTCAGCAAATTGTGGAGCGTGAGATTTTACGAGACATGGTCAAAATTGTGAAGAAGAAGGTAAACAACACCTAATATACATGGTTTCCTTAATTTGTTAAACCTATTTGAGATCTCTAATAACTAGGCTTATTGTTTTTGATTACAGCCTGATTTAAATGTGAGGGAGAAGATTTTGATTTTGATAGATTCATGGCAAGAAGCTTTGGGAGGGCCAGGGGGACGATTTCCCCAGTATTACGCTGCATATAATGAGCTGAAGGTGATTTATTTGTGTCTCTATTATTATGCTCTTGCACCTGTCAGTCTTTAAGTGAAAGTCTGTTCAACGTCGTCCTTGGTTGATTTTCCCCTTACTGTAGCACTTGCTATAGCAAAGGTTCATGTTTTTTCAGTTGCAGTTGGTAATAATGACTTAGATATTTTATCACATAAAAGAAATAAATTCCTGGATATAGCTGAATCAATTCCTCTCTTACTTTCTCAATAAAAAAGATTATGGTGTAACCAAAAGTGGCTAAGCAAGTCTAGGTGTCAGAAATGATCTGTTAGATAAGAAAGTGAGTATGGTTTTCCTGATATCAGTTCACATTGACCTCTATTTAGATTCTTTTGAACTGGATAAAATGAACCGAAGGGAATGGAAAATGAACCAAAGATAGATGAATACAATAGAAAGAAGAGAGTTCCTTCCTTTTTTTTTTTTTGAGAAAGGTAACATTCGTATGTATTGACAAAAACCAGTACATGGGTTTTAATGAAAACCATAATTACAACTTATCAACAAAACAAGATATCTGAATCTAAATTCTAAATAGAGCCAAGGATCTCAATAATTGACTCAGTATCCTCTAAGTACAACTGTTTACACCAGAAACAAAAAAGTTTGATACAGTTCAATTTGATCTTCTGGAGATCACAACTTTTGCTCTCAAAACATCTAGCGTTTCTCTCTCTCCACTCTCCAGACTGTCCACCAGATACAGGCTGGGACAATCTTCCAACTATCTCTGTCTGAAGCTCCCCCACCTACCTCTTCCCAACTGTAGAGAAAGGTGGGTGATCCCGTTAGGCATAGTCCAAATAACACCCCTGAGGCTGATAAAAATCCTCCAACGTTGGGTTGTTATCCTGCACTGTAAAAATAGATGGCCAACTGTCTCAACCTCTTCTCCACACAAATAGCATCTCGAGCACACAGAGAACTTCTTCTTCTTGAGATTATCTTTTGTCAGGACTACTTCTCTTGCCAGTAACCAAGTAAAACATGCCACCTTGAAAGGGGTTTTTGTTTTCCAGATCTGTTTATATGGCCAATTTGATGGTTGTTGGCCACCTTTGTTCAAAAACTTGTATGCTGAGTTCACCTTTAACATGCCTTTGCTGTCTTTGTTCCACCATAATCTATCAACTTCATTCTTTGTCCCTTTGATCTCTGCGAGAGCTTTGAAAAATTCTGTCACAGTTTCAATTTTCCCAGTCATTAAAATTTCTTCTTAAATGGATGTTCCATCCTTGATGTGTCCAACTGTCAGCTACACTCATTTGTTGATGTATTGCCAAAGCATACAGTTCAGGAAAAGATTTTTTAAACTAGCATGTCCCAGCCATTTGTCCTCCCAGAATGAATGAGGTCTTACTTCGATTGCCTACCCTCACAGTTGTGTTATTTCTCAAACAAGGCCACATGATTCTGATAGACCTCCATAGACTTACACCATAGGGTGTTGATACCTCATTTGTCATCCATTTGTCCTCATCTCCATATTTAGCTTTAGTTGCCTTCCTTTTAGGTGCAGAGTATAACTGGAGAAGAATAATTTTTACCTCTACATTGCCCTGTTGAATAATTAAGCGGTCCTTAGTAGAAACTAGTTTCTCTTGCCAAACCAAACAAGTTAAATGAATTCAACAAAAGAAGTGCTAACCAACTATTGATCATGGAAGTTCTGCAGAATTTCTGTTTATGAGACTGCTACAGCCTAATTGATGGATTCAACCTCATTTTATCAATATATGTTGCCTTTGGCTTCCGTTTGCTTTCCCACTCGTTATTTCCTAAATGGAGAGTACTTCCCTCCAATATTATTTTGTCTGTAAATTAGTTAACTGATACTAGCTTCAGCTCAAAAGTTTTGGCAAAGACTTCCTGAGATGATAGTTATATTTTTCTTTCTGTTGTCAACTTCATAATTGCAAAAATATGTTTAAGAGCATTAACGTTTGAGTCCTCAAAACATGTTTGATATACTCAGTTCAGTTATGGAATCAATCCTCACAACATGTATTTACAGTTATGGGGATCTAGCTAAATATAGATCATTATAGAGGCCTTTCTGGGAAGTATGCTTTTTCTACGTGGAGCATTAACATAAAATATTTAGCTCCTCTAATAGGAAAATAAAGAGGACAAGGTTTAACCTCACAGCACTAAGATGAATGCGTTGGTTCTGTGAATGTTCAGACATATGCAACTTATAGAGAGTTAGGACCACTTTTAGTAGGTTCAGACATATGCAAGTTATAGAGAGTTACTACCACTTTGAGAAGTACACATTATGCCAGTAAAAGACAGATTTGTTCTAATAACACATCAAGTGGACAAAAATTGGAAGTCCTGTTGATCTAGGATAACTTTTCTATGCAGTTTATATCTTCTTATATGCTACTCTTTTTACTGTTGTGCTGTGCATGCTTCTTTTTCTTTTAATTTTTTCGAAGTTCTCTTCATATACTAGTTGAAATTGCATATTGCACTTTTCTATGCGAGTGGTTTTCATTTTTCAGTAGATCTTTTAGAAATACCGCATGCCAATTAAGGTGTGTATTTTCAAATGTGTTATTGCAATTTTTTTTAAAATGTCAAGCTGCTTTTACGTGGATTGTCTTCCATACAGAATTCTGTGTGGGGTGTGCAGGTTAAACAAGCATCCTGGATGATACAGAATTTTGTCTTCCATAATAACTATGTAACCATACCACCCACAGTTTGTCCTTTTTCTTGCATAGGTTCCACAGCGGCTTCCATAATACTGCTATACCTTACATTGATGCTAAATATAACACAGAAACAACATAAATCTTTAAATTAATAGAGTGTCCTAAATTATTAAAAATTCCAAAATACCTTCTATTTCCTCTATACACAAGAAATTGTTTGACATCGTCATTGTTCCATTGTATAACCGTAGCTTCTGACATGTTTTTGTACCAGAGAGTTCTTTATATACGTGTTGCCTTTGTCCTGAGTTGTTGTGTTTTCTTAATCACCTCAACCTTTACAGTTCACCAACATTTTTGTTCTTTTCTTTTATATTTTTTTGGGTTTTTCTAATGTACAATATTAATGGCTGCACCATTGAATAAAAGAAAAGTACAATATTAATGGCTGCACTGTTTAATCATGCTATGGTAATTCTTGCTATGATCTTAGGGTTACTTCGAGTACGTTTTATAATTCACAACTCTTTTCCTAAGTTTTCTTATATGTTTCTTGTATAAGTTGATTGCTCATGATTTGTAGAACTTCTCTAATGAATGGAGGATACCATTTTGTATCATTATGTTTGAATTAATCCATTGTCACAGTTGCTCCATCGTATTGCATTTGTTTCTTTTGTAACCCTTTTCCTCTCCAATTAGGAAATCAAGATGGAAATGAGTTGTTTTAGATTTTACCGTGTATCACCTGAAGCCTTCATCTTCTTATGTAGACTAGCTTCTGGACACACGTGTCAATCAATACAATTTTCTTAAAATCACATGAATATTATTAACATGCCTGTTGTATAAAAAAAATCATAATTTGAAGGAAAAAAGGTGTAAACACCTTTAGCAAAATGTGAAGTATATCAACTGCTATACCATTGTAATTTGTTACATCAAAATTCTGTATGTTAAGATCACACTCCTATATATGGAGACTTAGTTACATTTTAAAACTAAGTATGATATGGTGGTGAAAATAATTTTTCCAAGAAATTAATATCAGACTTAACATGATTTGAGTAAAAGCATATAAGATTTCACACAGGCTATTGTAAAATTTTACACAAAAAAACTTGCTCATCGCCTCATCCATTGTGGATTGTCTGTCAATTTTCAGTAAAAAGCACAGAAGTTTCCAATTTATTATTGATTAACTCACGTTTAAATTAAAAGATTAGTCATAGAATCGACAAGAATACTTCTGGCAACTTAATTAGATTTGTACTTTTGTCCTCACTGGAACATTAAATTTAACTTCTCCTTGCTATTTTGTTGATATAATATGCACCATTTGTTAGCGACAAGGGTATATATGCGCCATTTTTTTAACGAGGGTATATCCGTTACGATGTTCTAAATCATAAAGTTTGAAGAGTATCTTTGCCCCTTTTCCATAAATGAAGTAAATAACCTCTGCTGCATGCATACATTCTCGTAGTTAGAACTTTTTAAAAAGATCTTTTGAACAGTTGCCAGTTCAAAAAAAAGAAGATCTGTTAATTAACAAATGATATATATACAGCAGTAACCAGTGTTACTATGGCTTTTGTGCCGGCCTCCATCCTAGTTCCCTGGCCTGCAAGAAGAGAATGCTACAATATTGTGTTGTCTAATATTGGTGTTTATAAATGTGTGCGACAAATTGGTTAACTTGAAGTTGAACGTTTTCTGGCTTCTATCTTGAACTATATTGTGACATGGTGTTTGTTCCAAGTTTAATCGAAGACTACTTAGCATTAATTGAATTTGGTTGGGAGTTTAAAACTTACCACAAATTACAGAAGATACAAAATATATGATGATTATACATTCTATATGCATATCTAACAGGGTATTGGAAAAGATTCTGAATGACTTGATTGTTAATGTCAATTTTTTTTTTTTTAAACATTGATGTTTAAGAGATAATGATTTATAAAGATACTACCATCAATCAACATTTAAAGGTTATTTTGTCATTCTGTCTTCCAACTTTTATACTTGATAATATTAGTTTTTATTAATTTGATTGATCACTGATCTAGATTCATTCAAATCTTCATATGTTTTCTTTAAAAATGAACATTGCAGGCTGCAGGTGTAGAGTTTCCACCTCGAGAG-GAAAACAGTGTACCTTTATTTACACCACCACAAACCCATCCAATAGTCCACACGCCTTCCGCTTATGAGGAGGCTGCAGTTGAGGCCTCTCTTGAGTCTGATCCCTCTGGACTCAGGTATTGATTAACTTATTCTTTCCGTTTAGTACGGTTCATGCTCAAAGTGTTAGAATTCTGTTTATGAACATTTCACTTATTAAAGGACACTATTAAGATCTATATGGATATTGTTTATGTGCACCTTCCTCTTTTCAGTAAGTGCTTCACTATTGTTTATATGCACCACCTCTCTGTTTTAAAGGTCAATTAGTGTACCTTTATTGGACTCCCGAGTTTACTATCTAGAGATTGAAATTTTTGGTAGTACTTGTGGTATCCAGCATTTATGGCAACTTTGTTCTAGTGTAAGTGAAGTTTCTGATTCAAACAATGCATTGTTGGATGAAAAAGGATGGGTGGTCTTAGATAATCTTCCCCTCTTTAGAAAGCTTTTGGGGTTGAGGTCCATTTATCGTTGTGTCAGAGCAGGTCCCATCCTAATTCGTAGTTGATTAATTTTGGCACCCCATATTGAATTTCCCACGCCCCAGATGTCTATCCCTGGGCATGGGGTAGAGTGTTAAAGAGTTCCACATTGGATGAAAAAAGGATGGACGGTCTCCATGCATTATTGTCTTTGGACAATCCTCCCCTCTTGAGTAAGCAACATTTCTAAAGAACTGGTAATTTCAAGTAAGTGACATTTTTGGTATCCTGTCTTTTCAGTGTCGCGGAGATTCAAAGTGCCGAGGGGCTATCAGATGTCCTCACGGAGATGCTTGGTGCCTTGGATCCAAAGAACCCTCAG</genome_strand>
        <mrna_strand>CGGCACGAGGAGAATGTATTTCAGCAAATTGTGGAGCGTGAGATTTTACGAGACATGGTCAAAATTGTGAAGAAGAAG........................................................................................CCTGATTTAAATGTGAGGGAGAAGATTTTGATTTTGATAGATTCATGGCAAGAAGCTTTGGGAGGGCCAGGGGGGAGATTTCCCCAGTATTACGCTGCATATAATGAGCTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAGGTGTAGAGTTTCCACCTCGAGAGTGAAAACAGTGTACCTTTATTTACACCACCACAAACTCATCCAATAGTCCACATGCCTTCAGCTTATGAAGAGGCTGCAGTTGAGGCCTCTCTTGAGTCTGATCCCTCTGGACTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCAGAGATTCAAAGTGCTGAGGGGTTATCAGATGTCTTGACGGAGATGCTTGGTGCCTTGGATCCAAAGAATCCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312944" ref_strand="+" ref_description="SGN-E312944 [cTOA-14-I13]">
      <seq>gaagaagaagcctgatttaaatgtgagggagaagattttgattttgatagattcatggcaagaagctttgggagggccagggggacgatttccccagtattacgctgcatataatgagctgaaggctgcaggtgtagagtttccacctcgagaggaaaacagtgtacctttatttacaccaccacaaacccatccaatagtccacacgccttccgcttatgaggaggctgcagttgaggcctctcttgagtctgatccctctggactcagtgtcgcggagattcaaagtgccgaggggctatcagatgtcctcacggagatgcttggtgccttggatccaaagaaccctcagtccgtgaaggaggaggtgatagtcgatcttgttgaacagtgtcggtcttaccaaaagcgtgtgatgattcttgtgaacaacacagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="35956" stop="43076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36166" g_stop="36175" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36176" i_stop="36263" i_length="88">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36264" g_stop="36377" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="124" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36378" i_stop="41173" i_length="4796">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41174" g_stop="41319" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="270" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41320" i_stop="41967" i_length="648">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41968" g_stop="42049" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="352" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42050" i_stop="42690" i_length="641">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42691" g_stop="42776" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="438" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E312944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36166" e_stop="36175"/>
          <exon e_start="36264" e_stop="36377"/>
          <exon e_start="41174" e_stop="41319"/>
          <exon e_start="41968" e_stop="42049"/>
          <exon e_start="42691" e_stop="42776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGGTAAACAACACCTAATATACATGGTTTCCTTAATTTGTTAAACCTATTTGAGATCTCTAATAACTAGGCTTATTGTTTTTGATTACAGCCTGATTTAAATGTGAGGGAGAAGATTTTGATTTTGATAGATTCATGGCAAGAAGCTTTGGGAGGGCCAGGGGGACGATTTCCCCAGTATTACGCTGCATATAATGAGCTGAAGGTGATTTATTTGTGTCTCTATTATTATGCTCTTGCACCTGTCAGTCTTTAAGTGAAAGTCTGTTCAACGTCGTCCTTGGTTGATTTTCCCCTTACTGTAGCACTTGCTATAGCAAAGGTTCATGTTTTTTCAGTTGCAGTTGGTAATAATGACTTAGATATTTTATCACATAAAAGAAATAAATTCCTGGATATAGCTGAATCAATTCCTCTCTTACTTTCTCAATAAAAAAGATTATGGTGTAACCAAAAGTGGCTAAGCAAGTCTAGGTGTCAGAAATGATCTGTTAGATAAGAAAGTGAGTATGGTTTTCCTGATATCAGTTCACATTGACCTCTATTTAGATTCTTTTGAACTGGATAAAATGAACCGAAGGGAATGGAAAATGAACCAAAGATAGATGAATACAATAGAAAGAAGAGAGTTCCTTCCTTTTTTTTTTTTTGAGAAAGGTAACATTCGTATGTATTGACAAAAACCAGTACATGGGTTTTAATGAAAACCATAATTACAACTTATCAACAAAACAAGATATCTGAATCTAAATTCTAAATAGAGCCAAGGATCTCAATAATTGACTCAGTATCCTCTAAGTACAACTGTTTACACCAGAAACAAAAAAGTTTGATACAGTTCAATTTGATCTTCTGGAGATCACAACTTTTGCTCTCAAAACATCTAGCGTTTCTCTCTCTCCACTCTCCAGACTGTCCACCAGATACAGGCTGGGACAATCTTCCAACTATCTCTGTCTGAAGCTCCCCCACCTACCTCTTCCCAACTGTAGAGAAAGGTGGGTGATCCCGTTAGGCATAGTCCAAATAACACCCCTGAGGCTGATAAAAATCCTCCAACGTTGGGTTGTTATCCTGCACTGTAAAAATAGATGGCCAACTGTCTCAACCTCTTCTCCACACAAATAGCATCTCGAGCACACAGAGAACTTCTTCTTCTTGAGATTATCTTTTGTCAGGACTACTTCTCTTGCCAGTAACCAAGTAAAACATGCCACCTTGAAAGGGGTTTTTGTTTTCCAGATCTGTTTATATGGCCAATTTGATGGTTGTTGGCCACCTTTGTTCAAAAACTTGTATGCTGAGTTCACCTTTAACATGCCTTTGCTGTCTTTGTTCCACCATAATCTATCAACTTCATTCTTTGTCCCTTTGATCTCTGCGAGAGCTTTGAAAAATTCTGTCACAGTTTCAATTTTCCCAGTCATTAAAATTTCTTCTTAAATGGATGTTCCATCCTTGATGTGTCCAACTGTCAGCTACACTCATTTGTTGATGTATTGCCAAAGCATACAGTTCAGGAAAAGATTTTTTAAACTAGCATGTCCCAGCCATTTGTCCTCCCAGAATGAATGAGGTCTTACTTCGATTGCCTACCCTCACAGTTGTGTTATTTCTCAAACAAGGCCACATGATTCTGATAGACCTCCATAGACTTACACCATAGGGTGTTGATACCTCATTTGTCATCCATTTGTCCTCATCTCCATATTTAGCTTTAGTTGCCTTCCTTTTAGGTGCAGAGTATAACTGGAGAAGAATAATTTTTACCTCTACATTGCCCTGTTGAATAATTAAGCGGTCCTTAGTAGAAACTAGTTTCTCTTGCCAAACCAAACAAGTTAAATGAATTCAACAAAAGAAGTGCTAACCAACTATTGATCATGGAAGTTCTGCAGAATTTCTGTTTATGAGACTGCTACAGCCTAATTGATGGATTCAACCTCATTTTATCAATATATGTTGCCTTTGGCTTCCGTTTGCTTTCCCACTCGTTATTTCCTAAATGGAGAGTACTTCCCTCCAATATTATTTTGTCTGTAAATTAGTTAACTGATACTAGCTTCAGCTCAAAAGTTTTGGCAAAGACTTCCTGAGATGATAGTTATATTTTTCTTTCTGTTGTCAACTTCATAATTGCAAAAATATGTTTAAGAGCATTAACGTTTGAGTCCTCAAAACATGTTTGATATACTCAGTTCAGTTATGGAATCAATCCTCACAACATGTATTTACAGTTATGGGGATCTAGCTAAATATAGATCATTATAGAGGCCTTTCTGGGAAGTATGCTTTTTCTACGTGGAGCATTAACATAAAATATTTAGCTCCTCTAATAGGAAAATAAAGAGGACAAGGTTTAACCTCACAGCACTAAGATGAATGCGTTGGTTCTGTGAATGTTCAGACATATGCAACTTATAGAGAGTTAGGACCACTTTTAGTAGGTTCAGACATATGCAAGTTATAGAGAGTTACTACCACTTTGAGAAGTACACATTATGCCAGTAAAAGACAGATTTGTTCTAATAACACATCAAGTGGACAAAAATTGGAAGTCCTGTTGATCTAGGATAACTTTTCTATGCAGTTTATATCTTCTTATATGCTACTCTTTTTACTGTTGTGCTGTGCATGCTTCTTTTTCTTTTAATTTTTTCGAAGTTCTCTTCATATACTAGTTGAAATTGCATATTGCACTTTTCTATGCGAGTGGTTTTCATTTTTCAGTAGATCTTTTAGAAATACCGCATGCCAATTAAGGTGTGTATTTTCAAATGTGTTATTGCAATTTTTTTTAAAATGTCAAGCTGCTTTTACGTGGATTGTCTTCCATACAGAATTCTGTGTGGGGTGTGCAGGTTAAACAAGCATCCTGGATGATACAGAATTTTGTCTTCCATAATAACTATGTAACCATACCACCCACAGTTTGTCCTTTTTCTTGCATAGGTTCCACAGCGGCTTCCATAATACTGCTATACCTTACATTGATGCTAAATATAACACAGAAACAACATAAATCTTTAAATTAATAGAGTGTCCTAAATTATTAAAAATTCCAAAATACCTTCTATTTCCTCTATACACAAGAAATTGTTTGACATCGTCATTGTTCCATTGTATAACCGTAGCTTCTGACATGTTTTTGTACCAGAGAGTTCTTTATATACGTGTTGCCTTTGTCCTGAGTTGTTGTGTTTTCTTAATCACCTCAACCTTTACAGTTCACCAACATTTTTGTTCTTTTCTTTTATATTTTTTTGGGTTTTTCTAATGTACAATATTAATGGCTGCACCATTGAATAAAAGAAAAGTACAATATTAATGGCTGCACTGTTTAATCATGCTATGGTAATTCTTGCTATGATCTTAGGGTTACTTCGAGTACGTTTTATAATTCACAACTCTTTTCCTAAGTTTTCTTATATGTTTCTTGTATAAGTTGATTGCTCATGATTTGTAGAACTTCTCTAATGAATGGAGGATACCATTTTGTATCATTATGTTTGAATTAATCCATTGTCACAGTTGCTCCATCGTATTGCATTTGTTTCTTTTGTAACCCTTTTCCTCTCCAATTAGGAAATCAAGATGGAAATGAGTTGTTTTAGATTTTACCGTGTATCACCTGAAGCCTTCATCTTCTTATGTAGACTAGCTTCTGGACACACGTGTCAATCAATACAATTTTCTTAAAATCACATGAATATTATTAACATGCCTGTTGTATAAAAAAAATCATAATTTGAAGGAAAAAAGGTGTAAACACCTTTAGCAAAATGTGAAGTATATCAACTGCTATACCATTGTAATTTGTTACATCAAAATTCTGTATGTTAAGATCACACTCCTATATATGGAGACTTAGTTACATTTTAAAACTAAGTATGATATGGTGGTGAAAATAATTTTTCCAAGAAATTAATATCAGACTTAACATGATTTGAGTAAAAGCATATAAGATTTCACACAGGCTATTGTAAAATTTTACACAAAAAAACTTGCTCATCGCCTCATCCATTGTGGATTGTCTGTCAATTTTCAGTAAAAAGCACAGAAGTTTCCAATTTATTATTGATTAACTCACGTTTAAATTAAAAGATTAGTCATAGAATCGACAAGAATACTTCTGGCAACTTAATTAGATTTGTACTTTTGTCCTCACTGGAACATTAAATTTAACTTCTCCTTGCTATTTTGTTGATATAATATGCACCATTTGTTAGCGACAAGGGTATATATGCGCCATTTTTTTAACGAGGGTATATCCGTTACGATGTTCTAAATCATAAAGTTTGAAGAGTATCTTTGCCCCTTTTCCATAAATGAAGTAAATAACCTCTGCTGCATGCATACATTCTCGTAGTTAGAACTTTTTAAAAAGATCTTTTGAACAGTTGCCAGTTCAAAAAAAAGAAGATCTGTTAATTAACAAATGATATATATACAGCAGTAACCAGTGTTACTATGGCTTTTGTGCCGGCCTCCATCCTAGTTCCCTGGCCTGCAAGAAGAGAATGCTACAATATTGTGTTGTCTAATATTGGTGTTTATAAATGTGTGCGACAAATTGGTTAACTTGAAGTTGAACGTTTTCTGGCTTCTATCTTGAACTATATTGTGACATGGTGTTTGTTCCAAGTTTAATCGAAGACTACTTAGCATTAATTGAATTTGGTTGGGAGTTTAAAACTTACCACAAATTACAGAAGATACAAAATATATGATGATTATACATTCTATATGCATATCTAACAGGGTATTGGAAAAGATTCTGAATGACTTGATTGTTAATGTCAATTTTTTTTTTTTTAAACATTGATGTTTAAGAGATAATGATTTATAAAGATACTACCATCAATCAACATTTAAAGGTTATTTTGTCATTCTGTCTTCCAACTTTTATACTTGATAATATTAGTTTTTATTAATTTGATTGATCACTGATCTAGATTCATTCAAATCTTCATATGTTTTCTTTAAAAATGAACATTGCAGGCTGCAGGTGTAGAGTTTCCACCTCGAGAGGAAAACAGTGTACCTTTATTTACACCACCACAAACCCATCCAATAGTCCACACGCCTTCCGCTTATGAGGAGGCTGCAGTTGAGGCCTCTCTTGAGTCTGATCCCTCTGGACTCAGGTATTGATTAACTTATTCTTTCCGTTTAGTACGGTTCATGCTCAAAGTGTTAGAATTCTGTTTATGAACATTTCACTTATTAAAGGACACTATTAAGATCTATATGGATATTGTTTATGTGCACCTTCCTCTTTTCAGTAAGTGCTTCACTATTGTTTATATGCACCACCTCTCTGTTTTAAAGGTCAATTAGTGTACCTTTATTGGACTCCCGAGTTTACTATCTAGAGATTGAAATTTTTGGTAGTACTTGTGGTATCCAGCATTTATGGCAACTTTGTTCTAGTGTAAGTGAAGTTTCTGATTCAAACAATGCATTGTTGGATGAAAAAGGATGGGTGGTCTTAGATAATCTTCCCCTCTTTAGAAAGCTTTTGGGGTTGAGGTCCATTTATCGTTGTGTCAGAGCAGGTCCCATCCTAATTCGTAGTTGATTAATTTTGGCACCCCATATTGAATTTCCCACGCCCCAGATGTCTATCCCTGGGCATGGGGTAGAGTGTTAAAGAGTTCCACATTGGATGAAAAAAGGATGGACGGTCTCCATGCATTATTGTCTTTGGACAATCCTCCCCTCTTGAGTAAGCAACATTTCTAAAGAACTGGTAATTTCAAGTAAGTGACATTTTTGGTATCCTGTCTTTTCAGTGTCGCGGAGATTCAAAGTGCCGAGGGGCTATCAGATGTCCTCACGGAGATGCTTGGTGCCTTGGATCCAAAGAACCCTCAGGTCAGAACTTGGTTTGTGCTCTTTTTTCTCAGGTTCATAGTGGTTACTTATCCCCATTCGCTACTATAAAAGTTGAAAACCGGAAGGGTGATGTGAATTATTCGTAGGTTAAATGAGTTTTTAAAGATAGTCTTTGGGTGCTTTATTCGGTTAAGTGGAAAATTTCAGAACTATACTTTCTCTGAATGCTACCTTCCACCCCTTCACTAATTGAAATGAGAAGCTTAGTTAAAATGATAACTATCCCCTCCCCGGTGAAACAAAAATTAGTAGAGGAAAAATAAATTGTACCTTCAGAAGTCCTTTTAAAAATATCTGGCATGGCTTTTGTCTCCCTTTTTGATGGGGGCATGTTGTTACATCTAGGTCTTTATTGGGTTTTTGTTTAATTTTGTAGGTTAAATAGGGTTACTAAAGTGTAGATATCCTATTCTTCCTTTCAGTACTTTTATAGCTGAAATACTAGGAACTATCATGTTGTATTCCATTTTCAGTATAAGTGATGTTACATTCCATCATTGAGTGTTAAAATACATATCGGTTCATCAACATTGTTTCATGCAATTTGTGTTTGGCGTAACTTGTCAAGTCCAAGATGAATTATCGTTCGTGTTTTAATTTATTATGTGACGTCTATGCAGTCCGTGAAGGAGGAGGTGATAGTCGATCTTGTTGAACAGTGTCGGTCTTACCAAAAGCGTGTGATGATTCTTGTGAACAACACAGT</genome_strand>
        <mrna_strand>GAAGAAGAAG........................................................................................CCTGATTTAAATGTGAGGGAGAAGATTTTGATTTTGATAGATTCATGGCAAGAAGCTTTGGGAGGGCCAGGGGGACGATTTCCCCAGTATTACGCTGCATATAATGAGCTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGGTGTAGAGTTTCCACCTCGAGAGGAAAACAGTGTACCTTTATTTACACCACCACAAACCCATCCAATAGTCCACACGCCTTCCGCTTATGAGGAGGCTGCAGTTGAGGCCTCTCTTGAGTCTGATCCCTCTGGACTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGCGGAGATTCAAAGTGCCGAGGGGCTATCAGATGTCCTCACGGAGATGCTTGGTGCCTTGGATCCAAAGAACCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGAAGGAGGAGGTGATAGTCGATCTTGTTGAACAGTGTCGGTCTTACCAAAAGCGTGTGATGATTCTTGTGAACAACACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261995" ref_strand="+" ref_description="SGN-E261995 [cLEG-58-D21]">
      <seq>tacgctgcatataatgagctgaaggctgcaggtgtagagtttccacctcgagaggaaaacagtgtacctttatttacaccaccacaaacccatccaatagtccacacgccttccgcttatgaggaggctgcagttgaggcctctcttgagtctgatccctctggactcagtgtcgcggagattcaaagtgccgaggggctatcagatgtcctcacggagatgcttggtgccttggatccaaagaaccctcagtccgtgaaggaggaggtgatagtcgatcttgttgaacagtgtcggtcttaccaaaagcgtgtgatgattcttgtgaacaacacagtagacgaggatctgctgtgtaaaggattggcactcaatgacaatctgcagcgagttcttcgtagacatgacgatattgccaaaggaacctcaacaattactgtaccacccagagaaactcctgttgcaccccttatgaatgtgaatcatgaggatgatgagtcagaagatgatttctctcacttatcacggagaacttcaagagatccatcacagggacaggggcggaagactattgatgtgaagagtgagccaatgcgaattactccaactcttcctcctccaccttcatcaaggagaccagtttttacggatggggaaatggttgattatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="36054" stop="44508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36354" g_stop="36377" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36378" i_stop="41173" i_length="4796">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41174" g_stop="41319" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="170" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41320" i_stop="41967" i_length="648">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41968" g_stop="42049" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="252" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42050" i_stop="42690" i_length="641">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42691" g_stop="42776" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="338" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42777" i_stop="42849" i_length="73">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42850" g_stop="43041" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="530" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43042" i_stop="44066" i_length="1025">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44067" g_stop="44208" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="672" r_length="142" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E261995" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36354" e_stop="36377"/>
          <exon e_start="41174" e_stop="41319"/>
          <exon e_start="41968" e_stop="42049"/>
          <exon e_start="42691" e_stop="42776"/>
          <exon e_start="42850" e_stop="43041"/>
          <exon e_start="44067" e_stop="44208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGCTGCATATAATGAGCTGAAGGTGATTTATTTGTGTCTCTATTATTATGCTCTTGCACCTGTCAGTCTTTAAGTGAAAGTCTGTTCAACGTCGTCCTTGGTTGATTTTCCCCTTACTGTAGCACTTGCTATAGCAAAGGTTCATGTTTTTTCAGTTGCAGTTGGTAATAATGACTTAGATATTTTATCACATAAAAGAAATAAATTCCTGGATATAGCTGAATCAATTCCTCTCTTACTTTCTCAATAAAAAAGATTATGGTGTAACCAAAAGTGGCTAAGCAAGTCTAGGTGTCAGAAATGATCTGTTAGATAAGAAAGTGAGTATGGTTTTCCTGATATCAGTTCACATTGACCTCTATTTAGATTCTTTTGAACTGGATAAAATGAACCGAAGGGAATGGAAAATGAACCAAAGATAGATGAATACAATAGAAAGAAGAGAGTTCCTTCCTTTTTTTTTTTTTGAGAAAGGTAACATTCGTATGTATTGACAAAAACCAGTACATGGGTTTTAATGAAAACCATAATTACAACTTATCAACAAAACAAGATATCTGAATCTAAATTCTAAATAGAGCCAAGGATCTCAATAATTGACTCAGTATCCTCTAAGTACAACTGTTTACACCAGAAACAAAAAAGTTTGATACAGTTCAATTTGATCTTCTGGAGATCACAACTTTTGCTCTCAAAACATCTAGCGTTTCTCTCTCTCCACTCTCCAGACTGTCCACCAGATACAGGCTGGGACAATCTTCCAACTATCTCTGTCTGAAGCTCCCCCACCTACCTCTTCCCAACTGTAGAGAAAGGTGGGTGATCCCGTTAGGCATAGTCCAAATAACACCCCTGAGGCTGATAAAAATCCTCCAACGTTGGGTTGTTATCCTGCACTGTAAAAATAGATGGCCAACTGTCTCAACCTCTTCTCCACACAAATAGCATCTCGAGCACACAGAGAACTTCTTCTTCTTGAGATTATCTTTTGTCAGGACTACTTCTCTTGCCAGTAACCAAGTAAAACATGCCACCTTGAAAGGGGTTTTTGTTTTCCAGATCTGTTTATATGGCCAATTTGATGGTTGTTGGCCACCTTTGTTCAAAAACTTGTATGCTGAGTTCACCTTTAACATGCCTTTGCTGTCTTTGTTCCACCATAATCTATCAACTTCATTCTTTGTCCCTTTGATCTCTGCGAGAGCTTTGAAAAATTCTGTCACAGTTTCAATTTTCCCAGTCATTAAAATTTCTTCTTAAATGGATGTTCCATCCTTGATGTGTCCAACTGTCAGCTACACTCATTTGTTGATGTATTGCCAAAGCATACAGTTCAGGAAAAGATTTTTTAAACTAGCATGTCCCAGCCATTTGTCCTCCCAGAATGAATGAGGTCTTACTTCGATTGCCTACCCTCACAGTTGTGTTATTTCTCAAACAAGGCCACATGATTCTGATAGACCTCCATAGACTTACACCATAGGGTGTTGATACCTCATTTGTCATCCATTTGTCCTCATCTCCATATTTAGCTTTAGTTGCCTTCCTTTTAGGTGCAGAGTATAACTGGAGAAGAATAATTTTTACCTCTACATTGCCCTGTTGAATAATTAAGCGGTCCTTAGTAGAAACTAGTTTCTCTTGCCAAACCAAACAAGTTAAATGAATTCAACAAAAGAAGTGCTAACCAACTATTGATCATGGAAGTTCTGCAGAATTTCTGTTTATGAGACTGCTACAGCCTAATTGATGGATTCAACCTCATTTTATCAATATATGTTGCCTTTGGCTTCCGTTTGCTTTCCCACTCGTTATTTCCTAAATGGAGAGTACTTCCCTCCAATATTATTTTGTCTGTAAATTAGTTAACTGATACTAGCTTCAGCTCAAAAGTTTTGGCAAAGACTTCCTGAGATGATAGTTATATTTTTCTTTCTGTTGTCAACTTCATAATTGCAAAAATATGTTTAAGAGCATTAACGTTTGAGTCCTCAAAACATGTTTGATATACTCAGTTCAGTTATGGAATCAATCCTCACAACATGTATTTACAGTTATGGGGATCTAGCTAAATATAGATCATTATAGAGGCCTTTCTGGGAAGTATGCTTTTTCTACGTGGAGCATTAACATAAAATATTTAGCTCCTCTAATAGGAAAATAAAGAGGACAAGGTTTAACCTCACAGCACTAAGATGAATGCGTTGGTTCTGTGAATGTTCAGACATATGCAACTTATAGAGAGTTAGGACCACTTTTAGTAGGTTCAGACATATGCAAGTTATAGAGAGTTACTACCACTTTGAGAAGTACACATTATGCCAGTAAAAGACAGATTTGTTCTAATAACACATCAAGTGGACAAAAATTGGAAGTCCTGTTGATCTAGGATAACTTTTCTATGCAGTTTATATCTTCTTATATGCTACTCTTTTTACTGTTGTGCTGTGCATGCTTCTTTTTCTTTTAATTTTTTCGAAGTTCTCTTCATATACTAGTTGAAATTGCATATTGCACTTTTCTATGCGAGTGGTTTTCATTTTTCAGTAGATCTTTTAGAAATACCGCATGCCAATTAAGGTGTGTATTTTCAAATGTGTTATTGCAATTTTTTTTAAAATGTCAAGCTGCTTTTACGTGGATTGTCTTCCATACAGAATTCTGTGTGGGGTGTGCAGGTTAAACAAGCATCCTGGATGATACAGAATTTTGTCTTCCATAATAACTATGTAACCATACCACCCACAGTTTGTCCTTTTTCTTGCATAGGTTCCACAGCGGCTTCCATAATACTGCTATACCTTACATTGATGCTAAATATAACACAGAAACAACATAAATCTTTAAATTAATAGAGTGTCCTAAATTATTAAAAATTCCAAAATACCTTCTATTTCCTCTATACACAAGAAATTGTTTGACATCGTCATTGTTCCATTGTATAACCGTAGCTTCTGACATGTTTTTGTACCAGAGAGTTCTTTATATACGTGTTGCCTTTGTCCTGAGTTGTTGTGTTTTCTTAATCACCTCAACCTTTACAGTTCACCAACATTTTTGTTCTTTTCTTTTATATTTTTTTGGGTTTTTCTAATGTACAATATTAATGGCTGCACCATTGAATAAAAGAAAAGTACAATATTAATGGCTGCACTGTTTAATCATGCTATGGTAATTCTTGCTATGATCTTAGGGTTACTTCGAGTACGTTTTATAATTCACAACTCTTTTCCTAAGTTTTCTTATATGTTTCTTGTATAAGTTGATTGCTCATGATTTGTAGAACTTCTCTAATGAATGGAGGATACCATTTTGTATCATTATGTTTGAATTAATCCATTGTCACAGTTGCTCCATCGTATTGCATTTGTTTCTTTTGTAACCCTTTTCCTCTCCAATTAGGAAATCAAGATGGAAATGAGTTGTTTTAGATTTTACCGTGTATCACCTGAAGCCTTCATCTTCTTATGTAGACTAGCTTCTGGACACACGTGTCAATCAATACAATTTTCTTAAAATCACATGAATATTATTAACATGCCTGTTGTATAAAAAAAATCATAATTTGAAGGAAAAAAGGTGTAAACACCTTTAGCAAAATGTGAAGTATATCAACTGCTATACCATTGTAATTTGTTACATCAAAATTCTGTATGTTAAGATCACACTCCTATATATGGAGACTTAGTTACATTTTAAAACTAAGTATGATATGGTGGTGAAAATAATTTTTCCAAGAAATTAATATCAGACTTAACATGATTTGAGTAAAAGCATATAAGATTTCACACAGGCTATTGTAAAATTTTACACAAAAAAACTTGCTCATCGCCTCATCCATTGTGGATTGTCTGTCAATTTTCAGTAAAAAGCACAGAAGTTTCCAATTTATTATTGATTAACTCACGTTTAAATTAAAAGATTAGTCATAGAATCGACAAGAATACTTCTGGCAACTTAATTAGATTTGTACTTTTGTCCTCACTGGAACATTAAATTTAACTTCTCCTTGCTATTTTGTTGATATAATATGCACCATTTGTTAGCGACAAGGGTATATATGCGCCATTTTTTTAACGAGGGTATATCCGTTACGATGTTCTAAATCATAAAGTTTGAAGAGTATCTTTGCCCCTTTTCCATAAATGAAGTAAATAACCTCTGCTGCATGCATACATTCTCGTAGTTAGAACTTTTTAAAAAGATCTTTTGAACAGTTGCCAGTTCAAAAAAAAGAAGATCTGTTAATTAACAAATGATATATATACAGCAGTAACCAGTGTTACTATGGCTTTTGTGCCGGCCTCCATCCTAGTTCCCTGGCCTGCAAGAAGAGAATGCTACAATATTGTGTTGTCTAATATTGGTGTTTATAAATGTGTGCGACAAATTGGTTAACTTGAAGTTGAACGTTTTCTGGCTTCTATCTTGAACTATATTGTGACATGGTGTTTGTTCCAAGTTTAATCGAAGACTACTTAGCATTAATTGAATTTGGTTGGGAGTTTAAAACTTACCACAAATTACAGAAGATACAAAATATATGATGATTATACATTCTATATGCATATCTAACAGGGTATTGGAAAAGATTCTGAATGACTTGATTGTTAATGTCAATTTTTTTTTTTTTAAACATTGATGTTTAAGAGATAATGATTTATAAAGATACTACCATCAATCAACATTTAAAGGTTATTTTGTCATTCTGTCTTCCAACTTTTATACTTGATAATATTAGTTTTTATTAATTTGATTGATCACTGATCTAGATTCATTCAAATCTTCATATGTTTTCTTTAAAAATGAACATTGCAGGCTGCAGGTGTAGAGTTTCCACCTCGAGAGGAAAACAGTGTACCTTTATTTACACCACCACAAACCCATCCAATAGTCCACACGCCTTCCGCTTATGAGGAGGCTGCAGTTGAGGCCTCTCTTGAGTCTGATCCCTCTGGACTCAGGTATTGATTAACTTATTCTTTCCGTTTAGTACGGTTCATGCTCAAAGTGTTAGAATTCTGTTTATGAACATTTCACTTATTAAAGGACACTATTAAGATCTATATGGATATTGTTTATGTGCACCTTCCTCTTTTCAGTAAGTGCTTCACTATTGTTTATATGCACCACCTCTCTGTTTTAAAGGTCAATTAGTGTACCTTTATTGGACTCCCGAGTTTACTATCTAGAGATTGAAATTTTTGGTAGTACTTGTGGTATCCAGCATTTATGGCAACTTTGTTCTAGTGTAAGTGAAGTTTCTGATTCAAACAATGCATTGTTGGATGAAAAAGGATGGGTGGTCTTAGATAATCTTCCCCTCTTTAGAAAGCTTTTGGGGTTGAGGTCCATTTATCGTTGTGTCAGAGCAGGTCCCATCCTAATTCGTAGTTGATTAATTTTGGCACCCCATATTGAATTTCCCACGCCCCAGATGTCTATCCCTGGGCATGGGGTAGAGTGTTAAAGAGTTCCACATTGGATGAAAAAAGGATGGACGGTCTCCATGCATTATTGTCTTTGGACAATCCTCCCCTCTTGAGTAAGCAACATTTCTAAAGAACTGGTAATTTCAAGTAAGTGACATTTTTGGTATCCTGTCTTTTCAGTGTCGCGGAGATTCAAAGTGCCGAGGGGCTATCAGATGTCCTCACGGAGATGCTTGGTGCCTTGGATCCAAAGAACCCTCAGGTCAGAACTTGGTTTGTGCTCTTTTTTCTCAGGTTCATAGTGGTTACTTATCCCCATTCGCTACTATAAAAGTTGAAAACCGGAAGGGTGATGTGAATTATTCGTAGGTTAAATGAGTTTTTAAAGATAGTCTTTGGGTGCTTTATTCGGTTAAGTGGAAAATTTCAGAACTATACTTTCTCTGAATGCTACCTTCCACCCCTTCACTAATTGAAATGAGAAGCTTAGTTAAAATGATAACTATCCCCTCCCCGGTGAAACAAAAATTAGTAGAGGAAAAATAAATTGTACCTTCAGAAGTCCTTTTAAAAATATCTGGCATGGCTTTTGTCTCCCTTTTTGATGGGGGCATGTTGTTACATCTAGGTCTTTATTGGGTTTTTGTTTAATTTTGTAGGTTAAATAGGGTTACTAAAGTGTAGATATCCTATTCTTCCTTTCAGTACTTTTATAGCTGAAATACTAGGAACTATCATGTTGTATTCCATTTTCAGTATAAGTGATGTTACATTCCATCATTGAGTGTTAAAATACATATCGGTTCATCAACATTGTTTCATGCAATTTGTGTTTGGCGTAACTTGTCAAGTCCAAGATGAATTATCGTTCGTGTTTTAATTTATTATGTGACGTCTATGCAGTCCGTGAAGGAGGAGGTGATAGTCGATCTTGTTGAACAGTGTCGGTCTTACCAAAAGCGTGTGATGATTCTTGTGAACAACACAGTGTAAGAACCTGAAGTTTTAGTGGTTTTATTACAATTTTAAAAGCATGTTAACATTGTTTTCCTTTGCAAATAGAGACGAGGATCTGCTGTGTAAAGGATTGGCACTCAATGACAATCTGCAGCGAGTTCTTCGTAGACATGACGATATTGCCAAAGGAACCTCAACAATTACTGTACCACCCAGAGAAACTCCTGTTGCACCCCTTATGAATGTGAATCATGAGGATGATGAGTCAGAAGATGATTTCTCTCACTTATCACGGAGGTAATGCTTGGTCATTTTGCTATTATACTGATTCTCTTTCTCCACCCGCACAGTAGTTTTGTTCAGTTTTATATAGTTTTGCCTTGTTTGTGCTGTTCTTACTGCAAATATTGCCACTTTAGAGTACGAGATGCAGTAAAGCATTTAGATGAGATCCTTAGATGGTCATTGATATGAGAATATAAATTAATTCTCTATTCTCCATCAAGGGAAGTTGGATTCATTTTGCGGCGAAGAATATTATGTCAAATGGTTCCGAGATATCATTTTCACTTTAGTTCTCTCAGCTGTTTAGGTGGTTAATACACTTCAAAATAGCCTATTTGAAATGCATCTGAGGTAACCTACTTATAGATTTTTTTCACTGAAAAACAGTTGTAGTTAATTCCATTAGTACTAATATTGGGCTGGTTATATTACCATAAGAAGTTTGGGGCCAAAGGCCTAAATAATGTTTTTGAGGGGAAAGTTTGGGGTAAAAGAGTCCATGGTACCCAATTCTTGATTTTTTTTCTTTTCTGGACCTACTTTTGGTGGTGTGACCATAACTTCATAGTATTGTCAAATTCAGAGGACAATTCACTGGTTCTCAAGGGAAAGACTTCTGCAGATTGATATTGGTGTCCACTGTCCAGGAGCTTAAGAAATTGTGCAATCTAGTGTCTCTGTGAATTTACTATATTCATTTGTGTGCTGGCATGACACAATTCTGTTTCTTGGTTAAGAATAATATTCTTTGAGTGAGATTCTTGAGCAATGAGACTGGAACACCTTGCCATGATGTCCCTTTTGGGGGGGGGGGGGGAGAGACAATGACGATTAAGAGATTATAACTTATAATTGTCAATATGTTTATAACCATTGTTAAGTTTAGAGGTTTGTGCTTTAATTTGATCAAGAATTCCAAAATGCGTAGGAATATTTTGTTGTGCTTTTTCCAAAATCTCTATTAGTATCCCTTGACGGTGTGGTCTTTGGCTTTTGTTTTTCCTTTTCTTGATGTGTTACTGTCACTCCATTTGCAGAACTTCAAGAGATCCATCACAGGGACAGGGGCGGAAGACTATTGATGTGAAGAGTGAGCCAATGCGAATTACTCCAACTCTTCCTCCTCCACCTTCATCAAGGAGACCAGTTTTTACGGATGGGAAAATGGTTGATTATCTC</genome_strand>
        <mrna_strand>TACGCTGCATATAATGAGCTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGGTGTAGAGTTTCCACCTCGAGAGGAAAACAGTGTACCTTTATTTACACCACCACAAACCCATCCAATAGTCCACACGCCTTCCGCTTATGAGGAGGCTGCAGTTGAGGCCTCTCTTGAGTCTGATCCCTCTGGACTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGCGGAGATTCAAAGTGCCGAGGGGCTATCAGATGTCCTCACGGAGATGCTTGGTGCCTTGGATCCAAAGAACCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGAAGGAGGAGGTGATAGTCGATCTTGTTGAACAGTGTCGGTCTTACCAAAAGCGTGTGATGATTCTTGTGAACAACACAGT.........................................................................AGACGAGGATCTGCTGTGTAAAGGATTGGCACTCAATGACAATCTGCAGCGAGTTCTTCGTAGACATGACGATATTGCCAAAGGAACCTCAACAATTACTGTACCACCCAGAGAAACTCCTGTTGCACCCCTTATGAATGTGAATCATGAGGATGATGAGTCAGAAGATGATTTCTCTCACTTATCACGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCAAGAGATCCATCACAGGGACAGGGGCGGAAGACTATTGATGTGAAGAGTGAGCCAATGCGAATTACTCCAACTCTTCCTCCTCCACCTTCATCAAGGAGACCAGTTTTTACGGATGGGGAAATGGTTGATTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262596" ref_strand="+" ref_description="SGN-E262596 [cLEG-63-F1]">
      <seq>tacgctgcatataatgagctgaaggctgcaggtgtagagtttccacctcgagaggaaaacagtgtacctttatttacaccaccacaaacccatccaatagtccacacgccttccgcttatgaggaggctgcagttgaggcctctcttgagtctgatccctctggactcagtgtcgcggagattcaaagtgccgaggggctatcagatgtcctcacggagatgcttggtgccttggatccaaagaaccctcagtccgtgaaggaggaggtgatagtcgatcttgttgaacagtgtcggtcttaccaaaagcgtgtgatgattcttgtgaacaacacagtagacgaggatctgctgtgtaaaggattggcactcaatgacaatctgcagcgagttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="36054" stop="43207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36354" g_stop="36377" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36378" i_stop="41173" i_length="4796">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41174" g_stop="41319" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="170" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41320" i_stop="41967" i_length="648">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41968" g_stop="42049" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="252" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42050" i_stop="42690" i_length="641">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42691" g_stop="42776" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="338" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42777" i_stop="42849" i_length="73">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42850" g_stop="42907" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="396" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E262596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36354" e_stop="36377"/>
          <exon e_start="41174" e_stop="41319"/>
          <exon e_start="41968" e_stop="42049"/>
          <exon e_start="42691" e_stop="42776"/>
          <exon e_start="42850" e_stop="42907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGCTGCATATAATGAGCTGAAGGTGATTTATTTGTGTCTCTATTATTATGCTCTTGCACCTGTCAGTCTTTAAGTGAAAGTCTGTTCAACGTCGTCCTTGGTTGATTTTCCCCTTACTGTAGCACTTGCTATAGCAAAGGTTCATGTTTTTTCAGTTGCAGTTGGTAATAATGACTTAGATATTTTATCACATAAAAGAAATAAATTCCTGGATATAGCTGAATCAATTCCTCTCTTACTTTCTCAATAAAAAAGATTATGGTGTAACCAAAAGTGGCTAAGCAAGTCTAGGTGTCAGAAATGATCTGTTAGATAAGAAAGTGAGTATGGTTTTCCTGATATCAGTTCACATTGACCTCTATTTAGATTCTTTTGAACTGGATAAAATGAACCGAAGGGAATGGAAAATGAACCAAAGATAGATGAATACAATAGAAAGAAGAGAGTTCCTTCCTTTTTTTTTTTTTGAGAAAGGTAACATTCGTATGTATTGACAAAAACCAGTACATGGGTTTTAATGAAAACCATAATTACAACTTATCAACAAAACAAGATATCTGAATCTAAATTCTAAATAGAGCCAAGGATCTCAATAATTGACTCAGTATCCTCTAAGTACAACTGTTTACACCAGAAACAAAAAAGTTTGATACAGTTCAATTTGATCTTCTGGAGATCACAACTTTTGCTCTCAAAACATCTAGCGTTTCTCTCTCTCCACTCTCCAGACTGTCCACCAGATACAGGCTGGGACAATCTTCCAACTATCTCTGTCTGAAGCTCCCCCACCTACCTCTTCCCAACTGTAGAGAAAGGTGGGTGATCCCGTTAGGCATAGTCCAAATAACACCCCTGAGGCTGATAAAAATCCTCCAACGTTGGGTTGTTATCCTGCACTGTAAAAATAGATGGCCAACTGTCTCAACCTCTTCTCCACACAAATAGCATCTCGAGCACACAGAGAACTTCTTCTTCTTGAGATTATCTTTTGTCAGGACTACTTCTCTTGCCAGTAACCAAGTAAAACATGCCACCTTGAAAGGGGTTTTTGTTTTCCAGATCTGTTTATATGGCCAATTTGATGGTTGTTGGCCACCTTTGTTCAAAAACTTGTATGCTGAGTTCACCTTTAACATGCCTTTGCTGTCTTTGTTCCACCATAATCTATCAACTTCATTCTTTGTCCCTTTGATCTCTGCGAGAGCTTTGAAAAATTCTGTCACAGTTTCAATTTTCCCAGTCATTAAAATTTCTTCTTAAATGGATGTTCCATCCTTGATGTGTCCAACTGTCAGCTACACTCATTTGTTGATGTATTGCCAAAGCATACAGTTCAGGAAAAGATTTTTTAAACTAGCATGTCCCAGCCATTTGTCCTCCCAGAATGAATGAGGTCTTACTTCGATTGCCTACCCTCACAGTTGTGTTATTTCTCAAACAAGGCCACATGATTCTGATAGACCTCCATAGACTTACACCATAGGGTGTTGATACCTCATTTGTCATCCATTTGTCCTCATCTCCATATTTAGCTTTAGTTGCCTTCCTTTTAGGTGCAGAGTATAACTGGAGAAGAATAATTTTTACCTCTACATTGCCCTGTTGAATAATTAAGCGGTCCTTAGTAGAAACTAGTTTCTCTTGCCAAACCAAACAAGTTAAATGAATTCAACAAAAGAAGTGCTAACCAACTATTGATCATGGAAGTTCTGCAGAATTTCTGTTTATGAGACTGCTACAGCCTAATTGATGGATTCAACCTCATTTTATCAATATATGTTGCCTTTGGCTTCCGTTTGCTTTCCCACTCGTTATTTCCTAAATGGAGAGTACTTCCCTCCAATATTATTTTGTCTGTAAATTAGTTAACTGATACTAGCTTCAGCTCAAAAGTTTTGGCAAAGACTTCCTGAGATGATAGTTATATTTTTCTTTCTGTTGTCAACTTCATAATTGCAAAAATATGTTTAAGAGCATTAACGTTTGAGTCCTCAAAACATGTTTGATATACTCAGTTCAGTTATGGAATCAATCCTCACAACATGTATTTACAGTTATGGGGATCTAGCTAAATATAGATCATTATAGAGGCCTTTCTGGGAAGTATGCTTTTTCTACGTGGAGCATTAACATAAAATATTTAGCTCCTCTAATAGGAAAATAAAGAGGACAAGGTTTAACCTCACAGCACTAAGATGAATGCGTTGGTTCTGTGAATGTTCAGACATATGCAACTTATAGAGAGTTAGGACCACTTTTAGTAGGTTCAGACATATGCAAGTTATAGAGAGTTACTACCACTTTGAGAAGTACACATTATGCCAGTAAAAGACAGATTTGTTCTAATAACACATCAAGTGGACAAAAATTGGAAGTCCTGTTGATCTAGGATAACTTTTCTATGCAGTTTATATCTTCTTATATGCTACTCTTTTTACTGTTGTGCTGTGCATGCTTCTTTTTCTTTTAATTTTTTCGAAGTTCTCTTCATATACTAGTTGAAATTGCATATTGCACTTTTCTATGCGAGTGGTTTTCATTTTTCAGTAGATCTTTTAGAAATACCGCATGCCAATTAAGGTGTGTATTTTCAAATGTGTTATTGCAATTTTTTTTAAAATGTCAAGCTGCTTTTACGTGGATTGTCTTCCATACAGAATTCTGTGTGGGGTGTGCAGGTTAAACAAGCATCCTGGATGATACAGAATTTTGTCTTCCATAATAACTATGTAACCATACCACCCACAGTTTGTCCTTTTTCTTGCATAGGTTCCACAGCGGCTTCCATAATACTGCTATACCTTACATTGATGCTAAATATAACACAGAAACAACATAAATCTTTAAATTAATAGAGTGTCCTAAATTATTAAAAATTCCAAAATACCTTCTATTTCCTCTATACACAAGAAATTGTTTGACATCGTCATTGTTCCATTGTATAACCGTAGCTTCTGACATGTTTTTGTACCAGAGAGTTCTTTATATACGTGTTGCCTTTGTCCTGAGTTGTTGTGTTTTCTTAATCACCTCAACCTTTACAGTTCACCAACATTTTTGTTCTTTTCTTTTATATTTTTTTGGGTTTTTCTAATGTACAATATTAATGGCTGCACCATTGAATAAAAGAAAAGTACAATATTAATGGCTGCACTGTTTAATCATGCTATGGTAATTCTTGCTATGATCTTAGGGTTACTTCGAGTACGTTTTATAATTCACAACTCTTTTCCTAAGTTTTCTTATATGTTTCTTGTATAAGTTGATTGCTCATGATTTGTAGAACTTCTCTAATGAATGGAGGATACCATTTTGTATCATTATGTTTGAATTAATCCATTGTCACAGTTGCTCCATCGTATTGCATTTGTTTCTTTTGTAACCCTTTTCCTCTCCAATTAGGAAATCAAGATGGAAATGAGTTGTTTTAGATTTTACCGTGTATCACCTGAAGCCTTCATCTTCTTATGTAGACTAGCTTCTGGACACACGTGTCAATCAATACAATTTTCTTAAAATCACATGAATATTATTAACATGCCTGTTGTATAAAAAAAATCATAATTTGAAGGAAAAAAGGTGTAAACACCTTTAGCAAAATGTGAAGTATATCAACTGCTATACCATTGTAATTTGTTACATCAAAATTCTGTATGTTAAGATCACACTCCTATATATGGAGACTTAGTTACATTTTAAAACTAAGTATGATATGGTGGTGAAAATAATTTTTCCAAGAAATTAATATCAGACTTAACATGATTTGAGTAAAAGCATATAAGATTTCACACAGGCTATTGTAAAATTTTACACAAAAAAACTTGCTCATCGCCTCATCCATTGTGGATTGTCTGTCAATTTTCAGTAAAAAGCACAGAAGTTTCCAATTTATTATTGATTAACTCACGTTTAAATTAAAAGATTAGTCATAGAATCGACAAGAATACTTCTGGCAACTTAATTAGATTTGTACTTTTGTCCTCACTGGAACATTAAATTTAACTTCTCCTTGCTATTTTGTTGATATAATATGCACCATTTGTTAGCGACAAGGGTATATATGCGCCATTTTTTTAACGAGGGTATATCCGTTACGATGTTCTAAATCATAAAGTTTGAAGAGTATCTTTGCCCCTTTTCCATAAATGAAGTAAATAACCTCTGCTGCATGCATACATTCTCGTAGTTAGAACTTTTTAAAAAGATCTTTTGAACAGTTGCCAGTTCAAAAAAAAGAAGATCTGTTAATTAACAAATGATATATATACAGCAGTAACCAGTGTTACTATGGCTTTTGTGCCGGCCTCCATCCTAGTTCCCTGGCCTGCAAGAAGAGAATGCTACAATATTGTGTTGTCTAATATTGGTGTTTATAAATGTGTGCGACAAATTGGTTAACTTGAAGTTGAACGTTTTCTGGCTTCTATCTTGAACTATATTGTGACATGGTGTTTGTTCCAAGTTTAATCGAAGACTACTTAGCATTAATTGAATTTGGTTGGGAGTTTAAAACTTACCACAAATTACAGAAGATACAAAATATATGATGATTATACATTCTATATGCATATCTAACAGGGTATTGGAAAAGATTCTGAATGACTTGATTGTTAATGTCAATTTTTTTTTTTTTAAACATTGATGTTTAAGAGATAATGATTTATAAAGATACTACCATCAATCAACATTTAAAGGTTATTTTGTCATTCTGTCTTCCAACTTTTATACTTGATAATATTAGTTTTTATTAATTTGATTGATCACTGATCTAGATTCATTCAAATCTTCATATGTTTTCTTTAAAAATGAACATTGCAGGCTGCAGGTGTAGAGTTTCCACCTCGAGAGGAAAACAGTGTACCTTTATTTACACCACCACAAACCCATCCAATAGTCCACACGCCTTCCGCTTATGAGGAGGCTGCAGTTGAGGCCTCTCTTGAGTCTGATCCCTCTGGACTCAGGTATTGATTAACTTATTCTTTCCGTTTAGTACGGTTCATGCTCAAAGTGTTAGAATTCTGTTTATGAACATTTCACTTATTAAAGGACACTATTAAGATCTATATGGATATTGTTTATGTGCACCTTCCTCTTTTCAGTAAGTGCTTCACTATTGTTTATATGCACCACCTCTCTGTTTTAAAGGTCAATTAGTGTACCTTTATTGGACTCCCGAGTTTACTATCTAGAGATTGAAATTTTTGGTAGTACTTGTGGTATCCAGCATTTATGGCAACTTTGTTCTAGTGTAAGTGAAGTTTCTGATTCAAACAATGCATTGTTGGATGAAAAAGGATGGGTGGTCTTAGATAATCTTCCCCTCTTTAGAAAGCTTTTGGGGTTGAGGTCCATTTATCGTTGTGTCAGAGCAGGTCCCATCCTAATTCGTAGTTGATTAATTTTGGCACCCCATATTGAATTTCCCACGCCCCAGATGTCTATCCCTGGGCATGGGGTAGAGTGTTAAAGAGTTCCACATTGGATGAAAAAAGGATGGACGGTCTCCATGCATTATTGTCTTTGGACAATCCTCCCCTCTTGAGTAAGCAACATTTCTAAAGAACTGGTAATTTCAAGTAAGTGACATTTTTGGTATCCTGTCTTTTCAGTGTCGCGGAGATTCAAAGTGCCGAGGGGCTATCAGATGTCCTCACGGAGATGCTTGGTGCCTTGGATCCAAAGAACCCTCAGGTCAGAACTTGGTTTGTGCTCTTTTTTCTCAGGTTCATAGTGGTTACTTATCCCCATTCGCTACTATAAAAGTTGAAAACCGGAAGGGTGATGTGAATTATTCGTAGGTTAAATGAGTTTTTAAAGATAGTCTTTGGGTGCTTTATTCGGTTAAGTGGAAAATTTCAGAACTATACTTTCTCTGAATGCTACCTTCCACCCCTTCACTAATTGAAATGAGAAGCTTAGTTAAAATGATAACTATCCCCTCCCCGGTGAAACAAAAATTAGTAGAGGAAAAATAAATTGTACCTTCAGAAGTCCTTTTAAAAATATCTGGCATGGCTTTTGTCTCCCTTTTTGATGGGGGCATGTTGTTACATCTAGGTCTTTATTGGGTTTTTGTTTAATTTTGTAGGTTAAATAGGGTTACTAAAGTGTAGATATCCTATTCTTCCTTTCAGTACTTTTATAGCTGAAATACTAGGAACTATCATGTTGTATTCCATTTTCAGTATAAGTGATGTTACATTCCATCATTGAGTGTTAAAATACATATCGGTTCATCAACATTGTTTCATGCAATTTGTGTTTGGCGTAACTTGTCAAGTCCAAGATGAATTATCGTTCGTGTTTTAATTTATTATGTGACGTCTATGCAGTCCGTGAAGGAGGAGGTGATAGTCGATCTTGTTGAACAGTGTCGGTCTTACCAAAAGCGTGTGATGATTCTTGTGAACAACACAGTGTAAGAACCTGAAGTTTTAGTGGTTTTATTACAATTTTAAAAGCATGTTAACATTGTTTTCCTTTGCAAATAGAGACGAGGATCTGCTGTGTAAAGGATTGGCACTCAATGACAATCTGCAGCGAGTTCTT</genome_strand>
        <mrna_strand>TACGCTGCATATAATGAGCTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGGTGTAGAGTTTCCACCTCGAGAGGAAAACAGTGTACCTTTATTTACACCACCACAAACCCATCCAATAGTCCACACGCCTTCCGCTTATGAGGAGGCTGCAGTTGAGGCCTCTCTTGAGTCTGATCCCTCTGGACTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGCGGAGATTCAAAGTGCCGAGGGGCTATCAGATGTCCTCACGGAGATGCTTGGTGCCTTGGATCCAAAGAACCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGAAGGAGGAGGTGATAGTCGATCTTGTTGAACAGTGTCGGTCTTACCAAAAGCGTGTGATGATTCTTGTGAACAACACAGT.........................................................................AGACGAGGATCTGCTGTGTAAAGGATTGGCACTCAATGACAATCTGCAGCGAGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256718" ref_strand="+" ref_description="SGN-E256718 [cLEG-40-D2]">
      <seq>tacgctgcatataatgagctgaaggctgcaggtgtagagtttccacctcgagaggaaaacagtgtacctttatttacaccaccacaaacccatccaatagtccacacgccttccgcttatgaggaggctgcagttgaggcctctcttgagtctgatccctctggactcagtgtcgcggagattcaaagtgccgaggggctatcagatgtcctcacggagatgcttggtgccttggatccaaagaaccctcagtccgtgaaggaggaggtgatagtcgatcttgttgaacagtgtcggtcttaccaaaagcgtgtgatgattcttgtgaacaacacagtagacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="36054" stop="43081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36354" g_stop="36377" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36378" i_stop="41173" i_length="4796">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41174" g_stop="41319" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="170" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41320" i_stop="41967" i_length="648">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41968" g_stop="42049" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="252" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42050" i_stop="42690" i_length="641">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42691" g_stop="42776" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="338" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42777" i_stop="42849" i_length="73">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42850" g_stop="42854" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="343" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E256718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36354" e_stop="36377"/>
          <exon e_start="41174" e_stop="41319"/>
          <exon e_start="41968" e_stop="42049"/>
          <exon e_start="42691" e_stop="42776"/>
          <exon e_start="42850" e_stop="42854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGCTGCATATAATGAGCTGAAGGTGATTTATTTGTGTCTCTATTATTATGCTCTTGCACCTGTCAGTCTTTAAGTGAAAGTCTGTTCAACGTCGTCCTTGGTTGATTTTCCCCTTACTGTAGCACTTGCTATAGCAAAGGTTCATGTTTTTTCAGTTGCAGTTGGTAATAATGACTTAGATATTTTATCACATAAAAGAAATAAATTCCTGGATATAGCTGAATCAATTCCTCTCTTACTTTCTCAATAAAAAAGATTATGGTGTAACCAAAAGTGGCTAAGCAAGTCTAGGTGTCAGAAATGATCTGTTAGATAAGAAAGTGAGTATGGTTTTCCTGATATCAGTTCACATTGACCTCTATTTAGATTCTTTTGAACTGGATAAAATGAACCGAAGGGAATGGAAAATGAACCAAAGATAGATGAATACAATAGAAAGAAGAGAGTTCCTTCCTTTTTTTTTTTTTGAGAAAGGTAACATTCGTATGTATTGACAAAAACCAGTACATGGGTTTTAATGAAAACCATAATTACAACTTATCAACAAAACAAGATATCTGAATCTAAATTCTAAATAGAGCCAAGGATCTCAATAATTGACTCAGTATCCTCTAAGTACAACTGTTTACACCAGAAACAAAAAAGTTTGATACAGTTCAATTTGATCTTCTGGAGATCACAACTTTTGCTCTCAAAACATCTAGCGTTTCTCTCTCTCCACTCTCCAGACTGTCCACCAGATACAGGCTGGGACAATCTTCCAACTATCTCTGTCTGAAGCTCCCCCACCTACCTCTTCCCAACTGTAGAGAAAGGTGGGTGATCCCGTTAGGCATAGTCCAAATAACACCCCTGAGGCTGATAAAAATCCTCCAACGTTGGGTTGTTATCCTGCACTGTAAAAATAGATGGCCAACTGTCTCAACCTCTTCTCCACACAAATAGCATCTCGAGCACACAGAGAACTTCTTCTTCTTGAGATTATCTTTTGTCAGGACTACTTCTCTTGCCAGTAACCAAGTAAAACATGCCACCTTGAAAGGGGTTTTTGTTTTCCAGATCTGTTTATATGGCCAATTTGATGGTTGTTGGCCACCTTTGTTCAAAAACTTGTATGCTGAGTTCACCTTTAACATGCCTTTGCTGTCTTTGTTCCACCATAATCTATCAACTTCATTCTTTGTCCCTTTGATCTCTGCGAGAGCTTTGAAAAATTCTGTCACAGTTTCAATTTTCCCAGTCATTAAAATTTCTTCTTAAATGGATGTTCCATCCTTGATGTGTCCAACTGTCAGCTACACTCATTTGTTGATGTATTGCCAAAGCATACAGTTCAGGAAAAGATTTTTTAAACTAGCATGTCCCAGCCATTTGTCCTCCCAGAATGAATGAGGTCTTACTTCGATTGCCTACCCTCACAGTTGTGTTATTTCTCAAACAAGGCCACATGATTCTGATAGACCTCCATAGACTTACACCATAGGGTGTTGATACCTCATTTGTCATCCATTTGTCCTCATCTCCATATTTAGCTTTAGTTGCCTTCCTTTTAGGTGCAGAGTATAACTGGAGAAGAATAATTTTTACCTCTACATTGCCCTGTTGAATAATTAAGCGGTCCTTAGTAGAAACTAGTTTCTCTTGCCAAACCAAACAAGTTAAATGAATTCAACAAAAGAAGTGCTAACCAACTATTGATCATGGAAGTTCTGCAGAATTTCTGTTTATGAGACTGCTACAGCCTAATTGATGGATTCAACCTCATTTTATCAATATATGTTGCCTTTGGCTTCCGTTTGCTTTCCCACTCGTTATTTCCTAAATGGAGAGTACTTCCCTCCAATATTATTTTGTCTGTAAATTAGTTAACTGATACTAGCTTCAGCTCAAAAGTTTTGGCAAAGACTTCCTGAGATGATAGTTATATTTTTCTTTCTGTTGTCAACTTCATAATTGCAAAAATATGTTTAAGAGCATTAACGTTTGAGTCCTCAAAACATGTTTGATATACTCAGTTCAGTTATGGAATCAATCCTCACAACATGTATTTACAGTTATGGGGATCTAGCTAAATATAGATCATTATAGAGGCCTTTCTGGGAAGTATGCTTTTTCTACGTGGAGCATTAACATAAAATATTTAGCTCCTCTAATAGGAAAATAAAGAGGACAAGGTTTAACCTCACAGCACTAAGATGAATGCGTTGGTTCTGTGAATGTTCAGACATATGCAACTTATAGAGAGTTAGGACCACTTTTAGTAGGTTCAGACATATGCAAGTTATAGAGAGTTACTACCACTTTGAGAAGTACACATTATGCCAGTAAAAGACAGATTTGTTCTAATAACACATCAAGTGGACAAAAATTGGAAGTCCTGTTGATCTAGGATAACTTTTCTATGCAGTTTATATCTTCTTATATGCTACTCTTTTTACTGTTGTGCTGTGCATGCTTCTTTTTCTTTTAATTTTTTCGAAGTTCTCTTCATATACTAGTTGAAATTGCATATTGCACTTTTCTATGCGAGTGGTTTTCATTTTTCAGTAGATCTTTTAGAAATACCGCATGCCAATTAAGGTGTGTATTTTCAAATGTGTTATTGCAATTTTTTTTAAAATGTCAAGCTGCTTTTACGTGGATTGTCTTCCATACAGAATTCTGTGTGGGGTGTGCAGGTTAAACAAGCATCCTGGATGATACAGAATTTTGTCTTCCATAATAACTATGTAACCATACCACCCACAGTTTGTCCTTTTTCTTGCATAGGTTCCACAGCGGCTTCCATAATACTGCTATACCTTACATTGATGCTAAATATAACACAGAAACAACATAAATCTTTAAATTAATAGAGTGTCCTAAATTATTAAAAATTCCAAAATACCTTCTATTTCCTCTATACACAAGAAATTGTTTGACATCGTCATTGTTCCATTGTATAACCGTAGCTTCTGACATGTTTTTGTACCAGAGAGTTCTTTATATACGTGTTGCCTTTGTCCTGAGTTGTTGTGTTTTCTTAATCACCTCAACCTTTACAGTTCACCAACATTTTTGTTCTTTTCTTTTATATTTTTTTGGGTTTTTCTAATGTACAATATTAATGGCTGCACCATTGAATAAAAGAAAAGTACAATATTAATGGCTGCACTGTTTAATCATGCTATGGTAATTCTTGCTATGATCTTAGGGTTACTTCGAGTACGTTTTATAATTCACAACTCTTTTCCTAAGTTTTCTTATATGTTTCTTGTATAAGTTGATTGCTCATGATTTGTAGAACTTCTCTAATGAATGGAGGATACCATTTTGTATCATTATGTTTGAATTAATCCATTGTCACAGTTGCTCCATCGTATTGCATTTGTTTCTTTTGTAACCCTTTTCCTCTCCAATTAGGAAATCAAGATGGAAATGAGTTGTTTTAGATTTTACCGTGTATCACCTGAAGCCTTCATCTTCTTATGTAGACTAGCTTCTGGACACACGTGTCAATCAATACAATTTTCTTAAAATCACATGAATATTATTAACATGCCTGTTGTATAAAAAAAATCATAATTTGAAGGAAAAAAGGTGTAAACACCTTTAGCAAAATGTGAAGTATATCAACTGCTATACCATTGTAATTTGTTACATCAAAATTCTGTATGTTAAGATCACACTCCTATATATGGAGACTTAGTTACATTTTAAAACTAAGTATGATATGGTGGTGAAAATAATTTTTCCAAGAAATTAATATCAGACTTAACATGATTTGAGTAAAAGCATATAAGATTTCACACAGGCTATTGTAAAATTTTACACAAAAAAACTTGCTCATCGCCTCATCCATTGTGGATTGTCTGTCAATTTTCAGTAAAAAGCACAGAAGTTTCCAATTTATTATTGATTAACTCACGTTTAAATTAAAAGATTAGTCATAGAATCGACAAGAATACTTCTGGCAACTTAATTAGATTTGTACTTTTGTCCTCACTGGAACATTAAATTTAACTTCTCCTTGCTATTTTGTTGATATAATATGCACCATTTGTTAGCGACAAGGGTATATATGCGCCATTTTTTTAACGAGGGTATATCCGTTACGATGTTCTAAATCATAAAGTTTGAAGAGTATCTTTGCCCCTTTTCCATAAATGAAGTAAATAACCTCTGCTGCATGCATACATTCTCGTAGTTAGAACTTTTTAAAAAGATCTTTTGAACAGTTGCCAGTTCAAAAAAAAGAAGATCTGTTAATTAACAAATGATATATATACAGCAGTAACCAGTGTTACTATGGCTTTTGTGCCGGCCTCCATCCTAGTTCCCTGGCCTGCAAGAAGAGAATGCTACAATATTGTGTTGTCTAATATTGGTGTTTATAAATGTGTGCGACAAATTGGTTAACTTGAAGTTGAACGTTTTCTGGCTTCTATCTTGAACTATATTGTGACATGGTGTTTGTTCCAAGTTTAATCGAAGACTACTTAGCATTAATTGAATTTGGTTGGGAGTTTAAAACTTACCACAAATTACAGAAGATACAAAATATATGATGATTATACATTCTATATGCATATCTAACAGGGTATTGGAAAAGATTCTGAATGACTTGATTGTTAATGTCAATTTTTTTTTTTTTAAACATTGATGTTTAAGAGATAATGATTTATAAAGATACTACCATCAATCAACATTTAAAGGTTATTTTGTCATTCTGTCTTCCAACTTTTATACTTGATAATATTAGTTTTTATTAATTTGATTGATCACTGATCTAGATTCATTCAAATCTTCATATGTTTTCTTTAAAAATGAACATTGCAGGCTGCAGGTGTAGAGTTTCCACCTCGAGAGGAAAACAGTGTACCTTTATTTACACCACCACAAACCCATCCAATAGTCCACACGCCTTCCGCTTATGAGGAGGCTGCAGTTGAGGCCTCTCTTGAGTCTGATCCCTCTGGACTCAGGTATTGATTAACTTATTCTTTCCGTTTAGTACGGTTCATGCTCAAAGTGTTAGAATTCTGTTTATGAACATTTCACTTATTAAAGGACACTATTAAGATCTATATGGATATTGTTTATGTGCACCTTCCTCTTTTCAGTAAGTGCTTCACTATTGTTTATATGCACCACCTCTCTGTTTTAAAGGTCAATTAGTGTACCTTTATTGGACTCCCGAGTTTACTATCTAGAGATTGAAATTTTTGGTAGTACTTGTGGTATCCAGCATTTATGGCAACTTTGTTCTAGTGTAAGTGAAGTTTCTGATTCAAACAATGCATTGTTGGATGAAAAAGGATGGGTGGTCTTAGATAATCTTCCCCTCTTTAGAAAGCTTTTGGGGTTGAGGTCCATTTATCGTTGTGTCAGAGCAGGTCCCATCCTAATTCGTAGTTGATTAATTTTGGCACCCCATATTGAATTTCCCACGCCCCAGATGTCTATCCCTGGGCATGGGGTAGAGTGTTAAAGAGTTCCACATTGGATGAAAAAAGGATGGACGGTCTCCATGCATTATTGTCTTTGGACAATCCTCCCCTCTTGAGTAAGCAACATTTCTAAAGAACTGGTAATTTCAAGTAAGTGACATTTTTGGTATCCTGTCTTTTCAGTGTCGCGGAGATTCAAAGTGCCGAGGGGCTATCAGATGTCCTCACGGAGATGCTTGGTGCCTTGGATCCAAAGAACCCTCAGGTCAGAACTTGGTTTGTGCTCTTTTTTCTCAGGTTCATAGTGGTTACTTATCCCCATTCGCTACTATAAAAGTTGAAAACCGGAAGGGTGATGTGAATTATTCGTAGGTTAAATGAGTTTTTAAAGATAGTCTTTGGGTGCTTTATTCGGTTAAGTGGAAAATTTCAGAACTATACTTTCTCTGAATGCTACCTTCCACCCCTTCACTAATTGAAATGAGAAGCTTAGTTAAAATGATAACTATCCCCTCCCCGGTGAAACAAAAATTAGTAGAGGAAAAATAAATTGTACCTTCAGAAGTCCTTTTAAAAATATCTGGCATGGCTTTTGTCTCCCTTTTTGATGGGGGCATGTTGTTACATCTAGGTCTTTATTGGGTTTTTGTTTAATTTTGTAGGTTAAATAGGGTTACTAAAGTGTAGATATCCTATTCTTCCTTTCAGTACTTTTATAGCTGAAATACTAGGAACTATCATGTTGTATTCCATTTTCAGTATAAGTGATGTTACATTCCATCATTGAGTGTTAAAATACATATCGGTTCATCAACATTGTTTCATGCAATTTGTGTTTGGCGTAACTTGTCAAGTCCAAGATGAATTATCGTTCGTGTTTTAATTTATTATGTGACGTCTATGCAGTCCGTGAAGGAGGAGGTGATAGTCGATCTTGTTGAACAGTGTCGGTCTTACCAAAAGCGTGTGATGATTCTTGTGAACAACACAGTGTAAGAACCTGAAGTTTTAGTGGTTTTATTACAATTTTAAAAGCATGTTAACATTGTTTTCCTTTGCAAATAGAGACG</genome_strand>
        <mrna_strand>TACGCTGCATATAATGAGCTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGGTGTAGAGTTTCCACCTCGAGAGGAAAACAGTGTACCTTTATTTACACCACCACAAACCCATCCAATAGTCCACACGCCTTCCGCTTATGAGGAGGCTGCAGTTGAGGCCTCTCTTGAGTCTGATCCCTCTGGACTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGCGGAGATTCAAAGTGCCGAGGGGCTATCAGATGTCCTCACGGAGATGCTTGGTGCCTTGGATCCAAAGAACCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGAAGGAGGAGGTGATAGTCGATCTTGTTGAACAGTGTCGGTCTTACCAAAAGCGTGTGATGATTCTTGTGAACAACACAGT.........................................................................AGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727792" ref_strand="+" ref_description="SGN-E727792 [LA15DA06]">
      <seq>gccttccgcttatgaggaggctgcagttgaggcctctcttgagtctgatccctctggactcagtgtcgcggagattcaaagtgccgaggggctatcagatgtcctcacggagatgcttggtgccttggatccaaagaaccctcagtccgtgaaggaggaggtgatagtcgatcttgttgaacagtgtcggtcttaccaaaagcgtgtgatgattcttgtgaacaacacagtagacgaggatctgctgtgtaaaggattggcactcaatgacaatctgcagcgagttcttcgtagacatgacgatattgccaaaggaacctcaacaattactgtaccacccagagaaactcctgttgcaccccttatgaatgtgaatcatgaggatgatgagtcagaagatgatttctctcacttatcacggagaacttcaagagatccatcacagggacaggggcggaagactattgatgtgaagagtgagccaatgcgaattactccaactcttcctcctccaccttcatcaaggagaccagtttttacggatgggaaaatggttgattatctcagcggtgacaggtttgaatctgaaagatcaatgggaacagaaggatcatcacctattgctgcttcaactaattcaaacaatgcgagttccatcccatggtcaagtcccaagccatcttcatctgcaccccctccagatgatttgctaaatccaactgctgatgagaacttcttgaaccccactgcatctatgtttactggaaaaaacaaccagaatgaatccaattcaaaagccaaatctgctgataacttgcctccagcaccttgggatgctcctcctccctaccgcatccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="40957" stop="44803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41257" g_stop="41319" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41320" i_stop="41967" i_length="648">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41968" g_stop="42049" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="145" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42050" i_stop="42690" i_length="641">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42691" g_stop="42776" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="231" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42777" i_stop="42849" i_length="73">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42850" g_stop="43041" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="423" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43042" i_stop="44066" i_length="1025">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44067" g_stop="44503" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="860" r_length="437" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E727792" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41257" e_stop="41319"/>
          <exon e_start="41968" e_stop="42049"/>
          <exon e_start="42691" e_stop="42776"/>
          <exon e_start="42850" e_stop="43041"/>
          <exon e_start="44067" e_stop="44503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCCGCTTATGAGGAGGCTGCAGTTGAGGCCTCTCTTGAGTCTGATCCCTCTGGACTCAGGTATTGATTAACTTATTCTTTCCGTTTAGTACGGTTCATGCTCAAAGTGTTAGAATTCTGTTTATGAACATTTCACTTATTAAAGGACACTATTAAGATCTATATGGATATTGTTTATGTGCACCTTCCTCTTTTCAGTAAGTGCTTCACTATTGTTTATATGCACCACCTCTCTGTTTTAAAGGTCAATTAGTGTACCTTTATTGGACTCCCGAGTTTACTATCTAGAGATTGAAATTTTTGGTAGTACTTGTGGTATCCAGCATTTATGGCAACTTTGTTCTAGTGTAAGTGAAGTTTCTGATTCAAACAATGCATTGTTGGATGAAAAAGGATGGGTGGTCTTAGATAATCTTCCCCTCTTTAGAAAGCTTTTGGGGTTGAGGTCCATTTATCGTTGTGTCAGAGCAGGTCCCATCCTAATTCGTAGTTGATTAATTTTGGCACCCCATATTGAATTTCCCACGCCCCAGATGTCTATCCCTGGGCATGGGGTAGAGTGTTAAAGAGTTCCACATTGGATGAAAAAAGGATGGACGGTCTCCATGCATTATTGTCTTTGGACAATCCTCCCCTCTTGAGTAAGCAACATTTCTAAAGAACTGGTAATTTCAAGTAAGTGACATTTTTGGTATCCTGTCTTTTCAGTGTCGCGGAGATTCAAAGTGCCGAGGGGCTATCAGATGTCCTCACGGAGATGCTTGGTGCCTTGGATCCAAAGAACCCTCAGGTCAGAACTTGGTTTGTGCTCTTTTTTCTCAGGTTCATAGTGGTTACTTATCCCCATTCGCTACTATAAAAGTTGAAAACCGGAAGGGTGATGTGAATTATTCGTAGGTTAAATGAGTTTTTAAAGATAGTCTTTGGGTGCTTTATTCGGTTAAGTGGAAAATTTCAGAACTATACTTTCTCTGAATGCTACCTTCCACCCCTTCACTAATTGAAATGAGAAGCTTAGTTAAAATGATAACTATCCCCTCCCCGGTGAAACAAAAATTAGTAGAGGAAAAATAAATTGTACCTTCAGAAGTCCTTTTAAAAATATCTGGCATGGCTTTTGTCTCCCTTTTTGATGGGGGCATGTTGTTACATCTAGGTCTTTATTGGGTTTTTGTTTAATTTTGTAGGTTAAATAGGGTTACTAAAGTGTAGATATCCTATTCTTCCTTTCAGTACTTTTATAGCTGAAATACTAGGAACTATCATGTTGTATTCCATTTTCAGTATAAGTGATGTTACATTCCATCATTGAGTGTTAAAATACATATCGGTTCATCAACATTGTTTCATGCAATTTGTGTTTGGCGTAACTTGTCAAGTCCAAGATGAATTATCGTTCGTGTTTTAATTTATTATGTGACGTCTATGCAGTCCGTGAAGGAGGAGGTGATAGTCGATCTTGTTGAACAGTGTCGGTCTTACCAAAAGCGTGTGATGATTCTTGTGAACAACACAGTGTAAGAACCTGAAGTTTTAGTGGTTTTATTACAATTTTAAAAGCATGTTAACATTGTTTTCCTTTGCAAATAGAGACGAGGATCTGCTGTGTAAAGGATTGGCACTCAATGACAATCTGCAGCGAGTTCTTCGTAGACATGACGATATTGCCAAAGGAACCTCAACAATTACTGTACCACCCAGAGAAACTCCTGTTGCACCCCTTATGAATGTGAATCATGAGGATGATGAGTCAGAAGATGATTTCTCTCACTTATCACGGAGGTAATGCTTGGTCATTTTGCTATTATACTGATTCTCTTTCTCCACCCGCACAGTAGTTTTGTTCAGTTTTATATAGTTTTGCCTTGTTTGTGCTGTTCTTACTGCAAATATTGCCACTTTAGAGTACGAGATGCAGTAAAGCATTTAGATGAGATCCTTAGATGGTCATTGATATGAGAATATAAATTAATTCTCTATTCTCCATCAAGGGAAGTTGGATTCATTTTGCGGCGAAGAATATTATGTCAAATGGTTCCGAGATATCATTTTCACTTTAGTTCTCTCAGCTGTTTAGGTGGTTAATACACTTCAAAATAGCCTATTTGAAATGCATCTGAGGTAACCTACTTATAGATTTTTTTCACTGAAAAACAGTTGTAGTTAATTCCATTAGTACTAATATTGGGCTGGTTATATTACCATAAGAAGTTTGGGGCCAAAGGCCTAAATAATGTTTTTGAGGGGAAAGTTTGGGGTAAAAGAGTCCATGGTACCCAATTCTTGATTTTTTTTCTTTTCTGGACCTACTTTTGGTGGTGTGACCATAACTTCATAGTATTGTCAAATTCAGAGGACAATTCACTGGTTCTCAAGGGAAAGACTTCTGCAGATTGATATTGGTGTCCACTGTCCAGGAGCTTAAGAAATTGTGCAATCTAGTGTCTCTGTGAATTTACTATATTCATTTGTGTGCTGGCATGACACAATTCTGTTTCTTGGTTAAGAATAATATTCTTTGAGTGAGATTCTTGAGCAATGAGACTGGAACACCTTGCCATGATGTCCCTTTTGGGGGGGGGGGGGGAGAGACAATGACGATTAAGAGATTATAACTTATAATTGTCAATATGTTTATAACCATTGTTAAGTTTAGAGGTTTGTGCTTTAATTTGATCAAGAATTCCAAAATGCGTAGGAATATTTTGTTGTGCTTTTTCCAAAATCTCTATTAGTATCCCTTGACGGTGTGGTCTTTGGCTTTTGTTTTTCCTTTTCTTGATGTGTTACTGTCACTCCATTTGCAGAACTTCAAGAGATCCATCACAGGGACAGGGGCGGAAGACTATTGATGTGAAGAGTGAGCCAATGCGAATTACTCCAACTCTTCCTCCTCCACCTTCATCAAGGAGACCAGTTTTTACGGATGGGAAAATGGTTGATTATCTCAGCGGTGACAGGTTTGAATCTGAAAGATCAATGGGAACAGAAGGATCATCACCTATTGCTGCTTCAACTAATTCAAACAATGCGAGTTCCATCCCATGGTCAAGTCCCAAGCCATCTTCATCTGCACCCCCTCCAGATGATTTGCTAAATCCAACTGCTGATGAGAACTTCTTGAACCCCACTGCATCTATGTTTACTGGAAAAAACAACCAGAATGAATCCAATTCAAAAGCCAAATCTGCTGATAACTTGCCTCCAGCACCTTGGGATGCTCCTCCT-CCTACCGCAATCCCTC</genome_strand>
        <mrna_strand>GCCTTCCGCTTATGAGGAGGCTGCAGTTGAGGCCTCTCTTGAGTCTGATCCCTCTGGACTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGCGGAGATTCAAAGTGCCGAGGGGCTATCAGATGTCCTCACGGAGATGCTTGGTGCCTTGGATCCAAAGAACCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGAAGGAGGAGGTGATAGTCGATCTTGTTGAACAGTGTCGGTCTTACCAAAAGCGTGTGATGATTCTTGTGAACAACACAGT.........................................................................AGACGAGGATCTGCTGTGTAAAGGATTGGCACTCAATGACAATCTGCAGCGAGTTCTTCGTAGACATGACGATATTGCCAAAGGAACCTCAACAATTACTGTACCACCCAGAGAAACTCCTGTTGCACCCCTTATGAATGTGAATCATGAGGATGATGAGTCAGAAGATGATTTCTCTCACTTATCACGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCAAGAGATCCATCACAGGGACAGGGGCGGAAGACTATTGATGTGAAGAGTGAGCCAATGCGAATTACTCCAACTCTTCCTCCTCCACCTTCATCAAGGAGACCAGTTTTTACGGATGGGAAAATGGTTGATTATCTCAGCGGTGACAGGTTTGAATCTGAAAGATCAATGGGAACAGAAGGATCATCACCTATTGCTGCTTCAACTAATTCAAACAATGCGAGTTCCATCCCATGGTCAAGTCCCAAGCCATCTTCATCTGCACCCCCTCCAGATGATTTGCTAAATCCAACTGCTGATGAGAACTTCTTGAACCCCACTGCATCTATGTTTACTGGAAAAAACAACCAGAATGAATCCAATTCAAAAGCCAAATCTGCTGATAACTTGCCTCCAGCACCTTGGGATGCTCCTCCTCCCTACCGC-ATCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703415" ref_strand="+" ref_description="SGN-E703415 [FA21BG03]">
      <seq>atcagatgtcctcacggagatgcttggtgccttggatccaaagaaccctcagtccgtgaaggaggaggtgatagtcgatcttgttgaacagtgtcggtcttaccaaaagcgtgtgatgattcttgtgaacaacacagtagacgaggatctgctgtgtaaaggattggcactcaatgacaatctgcagcgagttcttcgtagacatgacgatattgccaaaggaacctcaacaattactgtaccacccagagaaactcctgttgcaccccttatgaatgtgaatcatgaggatgatgagtcagaagatgatttctctcacttatcacggagaacttcaagagatccatcacagggacaggggcggaagactattgatgtgaagagtgagccaatgcgaattactccaactcttcctcctccaccttcatcaaggagaccagtttttacggatgggaaaatggttgattatctcagcggtgacaggtttgaatctgaaagatcaatgggaacagaaggatcatcacctattgctgcttcaactaattcaaacaatgcgagttccatcccatggtcaagtcccaagccatcttcatctgcaccccctccagatgatttgctaaatccaactgctgatgagaacttcttgaaccccactgcatctatgtttactggaaaaaacaaccagaatgaatccaattcaaaagccaaatctgctgataacttgcctccagcaccttgggatgctcctcctcctaccgcaatccctccaccaccagccagatatgatcagagacagcagtactttgagaaacatgtttctggtggctcccctcccgcaagaactggatcgagttcctatgacagcatagttggacaaacaaggaatctctctattaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="41698" stop="44937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41998" g_stop="42049" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42050" i_stop="42690" i_length="641">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42691" g_stop="42776" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="138" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42777" i_stop="42849" i_length="73">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42850" g_stop="43041" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="330" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43042" i_stop="44066" i_length="1025">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44067" g_stop="44637" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="901" r_length="571" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E703415" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41998" e_stop="42049"/>
          <exon e_start="42691" e_stop="42776"/>
          <exon e_start="42850" e_stop="43041"/>
          <exon e_start="44067" e_stop="44637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGATGTCCTCACGGAGATGCTTGGTGCCTTGGATCCAAAGAACCCTCAGGTCAGAACTTGGTTTGTGCTCTTTTTTCTCAGGTTCATAGTGGTTACTTATCCCCATTCGCTACTATAAAAGTTGAAAACCGGAAGGGTGATGTGAATTATTCGTAGGTTAAATGAGTTTTTAAAGATAGTCTTTGGGTGCTTTATTCGGTTAAGTGGAAAATTTCAGAACTATACTTTCTCTGAATGCTACCTTCCACCCCTTCACTAATTGAAATGAGAAGCTTAGTTAAAATGATAACTATCCCCTCCCCGGTGAAACAAAAATTAGTAGAGGAAAAATAAATTGTACCTTCAGAAGTCCTTTTAAAAATATCTGGCATGGCTTTTGTCTCCCTTTTTGATGGGGGCATGTTGTTACATCTAGGTCTTTATTGGGTTTTTGTTTAATTTTGTAGGTTAAATAGGGTTACTAAAGTGTAGATATCCTATTCTTCCTTTCAGTACTTTTATAGCTGAAATACTAGGAACTATCATGTTGTATTCCATTTTCAGTATAAGTGATGTTACATTCCATCATTGAGTGTTAAAATACATATCGGTTCATCAACATTGTTTCATGCAATTTGTGTTTGGCGTAACTTGTCAAGTCCAAGATGAATTATCGTTCGTGTTTTAATTTATTATGTGACGTCTATGCAGTCCGTGAAGGAGGAGGTGATAGTCGATCTTGTTGAACAGTGTCGGTCTTACCAAAAGCGTGTGATGATTCTTGTGAACAACACAGTGTAAGAACCTGAAGTTTTAGTGGTTTTATTACAATTTTAAAAGCATGTTAACATTGTTTTCCTTTGCAAATAGAGACGAGGATCTGCTGTGTAAAGGATTGGCACTCAATGACAATCTGCAGCGAGTTCTTCGTAGACATGACGATATTGCCAAAGGAACCTCAACAATTACTGTACCACCCAGAGAAACTCCTGTTGCACCCCTTATGAATGTGAATCATGAGGATGATGAGTCAGAAGATGATTTCTCTCACTTATCACGGAGGTAATGCTTGGTCATTTTGCTATTATACTGATTCTCTTTCTCCACCCGCACAGTAGTTTTGTTCAGTTTTATATAGTTTTGCCTTGTTTGTGCTGTTCTTACTGCAAATATTGCCACTTTAGAGTACGAGATGCAGTAAAGCATTTAGATGAGATCCTTAGATGGTCATTGATATGAGAATATAAATTAATTCTCTATTCTCCATCAAGGGAAGTTGGATTCATTTTGCGGCGAAGAATATTATGTCAAATGGTTCCGAGATATCATTTTCACTTTAGTTCTCTCAGCTGTTTAGGTGGTTAATACACTTCAAAATAGCCTATTTGAAATGCATCTGAGGTAACCTACTTATAGATTTTTTTCACTGAAAAACAGTTGTAGTTAATTCCATTAGTACTAATATTGGGCTGGTTATATTACCATAAGAAGTTTGGGGCCAAAGGCCTAAATAATGTTTTTGAGGGGAAAGTTTGGGGTAAAAGAGTCCATGGTACCCAATTCTTGATTTTTTTTCTTTTCTGGACCTACTTTTGGTGGTGTGACCATAACTTCATAGTATTGTCAAATTCAGAGGACAATTCACTGGTTCTCAAGGGAAAGACTTCTGCAGATTGATATTGGTGTCCACTGTCCAGGAGCTTAAGAAATTGTGCAATCTAGTGTCTCTGTGAATTTACTATATTCATTTGTGTGCTGGCATGACACAATTCTGTTTCTTGGTTAAGAATAATATTCTTTGAGTGAGATTCTTGAGCAATGAGACTGGAACACCTTGCCATGATGTCCCTTTTGGGGGGGGGGGGGGAGAGACAATGACGATTAAGAGATTATAACTTATAATTGTCAATATGTTTATAACCATTGTTAAGTTTAGAGGTTTGTGCTTTAATTTGATCAAGAATTCCAAAATGCGTAGGAATATTTTGTTGTGCTTTTTCCAAAATCTCTATTAGTATCCCTTGACGGTGTGGTCTTTGGCTTTTGTTTTTCCTTTTCTTGATGTGTTACTGTCACTCCATTTGCAGAACTTCAAGAGATCCATCACAGGGACAGGGGCGGAAGACTATTGATGTGAAGAGTGAGCCAATGCGAATTACTCCAACTCTTCCTCCTCCACCTTCATCAAGGAGACCAGTTTTTACGGATGGGAAAATGGTTGATTATCTCAGCGGTGACAGGTTTGAATCTGAAAGATCAATGGGAACAGAAGGATCATCACCTATTGCTGCTTCAACTAATTCAAACAATGCGAGTTCCATCCCATGGTCAAGTCCCAAGCCATCTTCATCTGCACCCCCTCCAGATGATTTGCTAAATCCAACTGCTGATGAGAACTTCTTGAACCCCACTGCATCTATGTTTACTGGAAAAAACAACCAGAATGAATCCAATTCAAAAGCCAAATCTGCTGATAACTTGCCTCCAGCACCTTGGGATGCTCCTCCTCCTACCGCAATCCCTCCACCACCAGCCAGATATGATCAGAGACAGCAGTACTTTGAGAAACATGTTTCTGGTGGCTCCCCTCCCGCAAGAACTGGATCGAGTTCCTATGACAGCATAGTTGGACAAACAAAGAATCTCTCTATTAATTCT</genome_strand>
        <mrna_strand>ATCAGATGTCCTCACGGAGATGCTTGGTGCCTTGGATCCAAAGAACCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGAAGGAGGAGGTGATAGTCGATCTTGTTGAACAGTGTCGGTCTTACCAAAAGCGTGTGATGATTCTTGTGAACAACACAGT.........................................................................AGACGAGGATCTGCTGTGTAAAGGATTGGCACTCAATGACAATCTGCAGCGAGTTCTTCGTAGACATGACGATATTGCCAAAGGAACCTCAACAATTACTGTACCACCCAGAGAAACTCCTGTTGCACCCCTTATGAATGTGAATCATGAGGATGATGAGTCAGAAGATGATTTCTCTCACTTATCACGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCAAGAGATCCATCACAGGGACAGGGGCGGAAGACTATTGATGTGAAGAGTGAGCCAATGCGAATTACTCCAACTCTTCCTCCTCCACCTTCATCAAGGAGACCAGTTTTTACGGATGGGAAAATGGTTGATTATCTCAGCGGTGACAGGTTTGAATCTGAAAGATCAATGGGAACAGAAGGATCATCACCTATTGCTGCTTCAACTAATTCAAACAATGCGAGTTCCATCCCATGGTCAAGTCCCAAGCCATCTTCATCTGCACCCCCTCCAGATGATTTGCTAAATCCAACTGCTGATGAGAACTTCTTGAACCCCACTGCATCTATGTTTACTGGAAAAAACAACCAGAATGAATCCAATTCAAAAGCCAAATCTGCTGATAACTTGCCTCCAGCACCTTGGGATGCTCCTCCTCCTACCGCAATCCCTCCACCACCAGCCAGATATGATCAGAGACAGCAGTACTTTGAGAAACATGTTTCTGGTGGCTCCCCTCCCGCAAGAACTGGATCGAGTTCCTATGACAGCATAGTTGGACAAACAAGGAATCTCTCTATTAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602936" ref_strand="+" ref_description="SGN-E602936 [56012]">
      <seq>gacggagatgcttggtgccttggatccaaagaatcctcagtccgtgaaggaggaggtgatagttgatcttgttgaacagtgtcgttcttaccaaaagcgtgtgatgattcttgtgaacaacactgtagacgaggatctgctttgtaaaggattggcactcaatgacactctgcagcgagttcttcgtagacatgacgatattgccaaaggaacctcaacaattactgtaccgcccagagaaactcctgttgcaccccttatgaatgtgaatcatgaggatgatgagtcagaagatgacttctctcacttatcacggagaacttcaagagatccatcacagggacaggggcggaagactattgatgtgaagagtgagcctatgcgaattactccaactcttcctcccccaccttcatcaaggagaccagtttttacagatggtaaaatggttgattatctcagtggtgacaggtttgaatcagaaagatcactgggaacagaaggatcttcacctattgctgcttcaactaattcaaacaatgcgagttccatcccatggtcaagtcccaagccatcttcatctgcaccccctccggatgatttgctaaatccaactgccgatgaggacttcttgaagcccactgcatctatgtttactggaaaaaacaacacaatgaatccaattcaaatgccaaatctgttgataacttggctccagcaccttgggatgctcctcctccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="41711" stop="44791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42010" g_stop="42049" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42050" i_stop="42690" i_length="641">
            <donor d_prob="0.992" d_score="0.95"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42691" g_stop="42776" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="126" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42777" i_stop="42849" i_length="73">
            <donor d_prob="0.911" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42850" g_stop="43041" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="318" r_length="192" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43042" i_stop="44066" i_length="1025">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44067" g_stop="44491" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="742" r_length="424" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E602936" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42010" e_stop="42049"/>
          <exon e_start="42691" e_stop="42776"/>
          <exon e_start="42850" e_stop="43041"/>
          <exon e_start="44067" e_stop="44491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGGAGATGCTTGGTGCCTTGGATCCAAAGAACCCTCAGGTCAGAACTTGGTTTGTGCTCTTTTTTCTCAGGTTCATAGTGGTTACTTATCCCCATTCGCTACTATAAAAGTTGAAAACCGGAAGGGTGATGTGAATTATTCGTAGGTTAAATGAGTTTTTAAAGATAGTCTTTGGGTGCTTTATTCGGTTAAGTGGAAAATTTCAGAACTATACTTTCTCTGAATGCTACCTTCCACCCCTTCACTAATTGAAATGAGAAGCTTAGTTAAAATGATAACTATCCCCTCCCCGGTGAAACAAAAATTAGTAGAGGAAAAATAAATTGTACCTTCAGAAGTCCTTTTAAAAATATCTGGCATGGCTTTTGTCTCCCTTTTTGATGGGGGCATGTTGTTACATCTAGGTCTTTATTGGGTTTTTGTTTAATTTTGTAGGTTAAATAGGGTTACTAAAGTGTAGATATCCTATTCTTCCTTTCAGTACTTTTATAGCTGAAATACTAGGAACTATCATGTTGTATTCCATTTTCAGTATAAGTGATGTTACATTCCATCATTGAGTGTTAAAATACATATCGGTTCATCAACATTGTTTCATGCAATTTGTGTTTGGCGTAACTTGTCAAGTCCAAGATGAATTATCGTTCGTGTTTTAATTTATTATGTGACGTCTATGCAGTCCGTGAAGGAGGAGGTGATAGTCGATCTTGTTGAACAGTGTCGGTCTTACCAAAAGCGTGTGATGATTCTTGTGAACAACACAGTGTAAGAACCTGAAGTTTTAGTGGTTTTATTACAATTTTAAAAGCATGTTAACATTGTTTTCCTTTGCAAATAGAGACGAGGATCTGCTGTGTAAAGGATTGGCACTCAATGACAATCTGCAGCGAGTTCTTCGTAGACATGACGATATTGCCAAAGGAACCTCAACAATTACTGTACCACCCAGAGAAACTCCTGTTGCACCCCTTATGAATGTGAATCATGAGGATGATGAGTCAGAAGATGATTTCTCTCACTTATCACGGAGGTAATGCTTGGTCATTTTGCTATTATACTGATTCTCTTTCTCCACCCGCACAGTAGTTTTGTTCAGTTTTATATAGTTTTGCCTTGTTTGTGCTGTTCTTACTGCAAATATTGCCACTTTAGAGTACGAGATGCAGTAAAGCATTTAGATGAGATCCTTAGATGGTCATTGATATGAGAATATAAATTAATTCTCTATTCTCCATCAAGGGAAGTTGGATTCATTTTGCGGCGAAGAATATTATGTCAAATGGTTCCGAGATATCATTTTCACTTTAGTTCTCTCAGCTGTTTAGGTGGTTAATACACTTCAAAATAGCCTATTTGAAATGCATCTGAGGTAACCTACTTATAGATTTTTTTCACTGAAAAACAGTTGTAGTTAATTCCATTAGTACTAATATTGGGCTGGTTATATTACCATAAGAAGTTTGGGGCCAAAGGCCTAAATAATGTTTTTGAGGGGAAAGTTTGGGGTAAAAGAGTCCATGGTACCCAATTCTTGATTTTTTTTCTTTTCTGGACCTACTTTTGGTGGTGTGACCATAACTTCATAGTATTGTCAAATTCAGAGGACAATTCACTGGTTCTCAAGGGAAAGACTTCTGCAGATTGATATTGGTGTCCACTGTCCAGGAGCTTAAGAAATTGTGCAATCTAGTGTCTCTGTGAATTTACTATATTCATTTGTGTGCTGGCATGACACAATTCTGTTTCTTGGTTAAGAATAATATTCTTTGAGTGAGATTCTTGAGCAATGAGACTGGAACACCTTGCCATGATGTCCCTTTTGGGGGGGGGGGGGGAGAGACAATGACGATTAAGAGATTATAACTTATAATTGTCAATATGTTTATAACCATTGTTAAGTTTAGAGGTTTGTGCTTTAATTTGATCAAGAATTCCAAAATGCGTAGGAATATTTTGTTGTGCTTTTTCCAAAATCTCTATTAGTATCCCTTGACGGTGTGGTCTTTGGCTTTTGTTTTTCCTTTTCTTGATGTGTTACTGTCACTCCATTTGCAGAACTTCAAGAGATCCATCACAGGGACAGGGGCGGAAGACTATTGATGTGAAGAGTGAGCCAATGCGAATTACTCCAACTCTTCCTCCTCCACCTTCATCAAGGAGACCAGTTTTTACGGATGGGAAAATGGTTGATTATCTCAGCGGTGACAGGTTTGAATCTGAAAGATCAATGGGAACAGAAGGATCATCACCTATTGCTGCTTCAACTAATTCAAACAATGCGAGTTCCATCCCATGGTCAAGTCCCAAGCCATCTTCATCTGCACCCCCTCCAGATGATTTGCTAAATCCAACTGCTGATGAGAACTTCTTGAACCCCACTGCATCTATGTTTACTGGAAAAAACAACCAGAATGAATCCAATTCAAAAGCCAAATCTGCTGATAACTTGCCTCCAGCACCTTGGGATGCTCCTCCTCCTA</genome_strand>
        <mrna_strand>GACGGAGATGCTTGGTGCCTTGGATCCAAAGAATCCTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGAAGGAGGAGGTGATAGTTGATCTTGTTGAACAGTGTCGTTCTTACCAAAAGCGTGTGATGATTCTTGTGAACAACACTGT.........................................................................AGACGAGGATCTGCTTTGTAAAGGATTGGCACTCAATGACACTCTGCAGCGAGTTCTTCGTAGACATGACGATATTGCCAAAGGAACCTCAACAATTACTGTACCGCCCAGAGAAACTCCTGTTGCACCCCTTATGAATGTGAATCATGAGGATGATGAGTCAGAAGATGACTTCTCTCACTTATCACGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCAAGAGATCCATCACAGGGACAGGGGCGGAAGACTATTGATGTGAAGAGTGAGCCTATGCGAATTACTCCAACTCTTCCTCCCCCACCTTCATCAAGGAGACCAGTTTTTACAGATGGTAAAATGGTTGATTATCTCAGTGGTGACAGGTTTGAATCAGAAAGATCACTGGGAACAGAAGGATCTTCACCTATTGCTGCTTCAACTAATTCAAACAATGCGAGTTCCATCCCATGGTCAAGTCCCAAGCCATCTTCATCTGCACCCCCTCCGGATGATTTGCTAAATCCAACTGCCGATGAGGACTTCTTGAAGCCCACTGCATCTATGTTTACTGGAAAAAACAA-CACAATGAATCCAATTCAAATGCCAAATCTGTTGATAACTTGGCTCCAGCACCTTGGGATGCTCCTCCTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572119" ref_strand="+" ref_description="SGN-E572119 [31222]">
      <seq>ccaactcttcctcccccaccttcatcaaggagaccagtttttacagatggtaaaatggttgattatctcagtggtgacaggtttgaatcagaaagatcactgggaacagaaggatcttcacctattgctgcttcaactaattcaaacaatgcgagttccatcccatggtcaagtcccaagccatcttcatctgcaccccctccggatgatttgctaaatccaactgctgatgaggacttcttgaaccccactgcatctatgtttactggaaaaaacaaccacaatgaatccaattcaaaagccacatctgccgataacttgcctccagcaccttgggatgctcctcctcctaccgcactccctccaccaccggccagatatgatcagagacagcagtactttgagaaacatgtttctggtggctcccctcccgcaaaaactggatcgacttcctatgacaacatagttggacaaacaaagaatctctctattaattcttcttcaccatccaaaccagagaaacccgaggacgcactcttcaaagatcttgttgattttgcaaaagccaagtcttcctcatcttcaaaccaatccaatagatcatttttaacgtgatttcactgacatatgaataatgtgtgcgtggggtgtataatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="43840" stop="45093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44140" g_stop="44793" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E572119" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44140" e_stop="44793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTCTTCCTCCTCCACCTTCATCAAGGAGACCAGTTTTTACGGATGGGAAAATGGTTGATTATCTCAGCGGTGACAGGTTTGAATCTGAAAGATCAATGGGAACAGAAGGATCATCACCTATTGCTGCTTCAACTAATTCAAACAATGCGAGTTCCATCCCATGGTCAAGTCCCAAGCCATCTTCATCTGCACCCCCTCCAGATGATTTGCTAAATCCAACTGCTGATGAGAACTTCTTGAACCCCACTGCATCTATGTTTACTGGAAAAAACAACCAGAATGAATCCAATTCAAAAGCCAAATCTGCTGATAACTTGCCTCCAGCACCTTGGGATGCTCCTCCTCCTACCGCAATCCCTCCACCACCAGCCAGATATGATCAGAGACAGCAGTACTTTGAGAAACATGTTTCTGGTGGCTCCCCTCCCGCAAGAACTGGATCGAGTTCCTATGACAGCATAGTTGGACAAACAAAGAATCTCTCTATTAATTCTTCTTCACCATCCAAACCAGAGAAACCTGAGGACGCACTCTTCAAAGATCTTGTTGATTTTGCAAAAGCCAAGTCTTCCTCATCTTCAAACCAATCCAATAGATCA-TTTTGA-GTGATTTCAATGA-ATATGAATAATGTGTG-GTGGGGTGTAT-ATCTA</genome_strand>
        <mrna_strand>CCAACTCTTCCTCCCCCACCTTCATCAAGGAGACCAGTTTTTACAGATGGTAAAATGGTTGATTATCTCAGTGGTGACAGGTTTGAATCAGAAAGATCACTGGGAACAGAAGGATCTTCACCTATTGCTGCTTCAACTAATTCAAACAATGCGAGTTCCATCCCATGGTCAAGTCCCAAGCCATCTTCATCTGCACCCCCTCCGGATGATTTGCTAAATCCAACTGCTGATGAGGACTTCTTGAACCCCACTGCATCTATGTTTACTGGAAAAAACAACCACAATGAATCCAATTCAAAAGCCACATCTGCCGATAACTTGCCTCCAGCACCTTGGGATGCTCCTCCTCCTACCGCACTCCCTCCACCACCGGCCAGATATGATCAGAGACAGCAGTACTTTGAGAAACATGTTTCTGGTGGCTCCCCTCCCGCAAAAACTGGATCGACTTCCTATGACAACATAGTTGGACAAACAAAGAATCTCTCTATTAATTCTTCTTCACCATCCAAACCAGAGAAACCCGAGGACGCACTCTTCAAAGATCTTGTTGATTTTGCAAAAGCCAAGTCTTCCTCATCTTCAAACCAATCCAATAGATCATTTTTAACGTGATTTCACTGACATATGAATAATGTGTGCGTGGGGTGTATAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576116" ref_strand="+" ref_description="SGN-E576116 [59284]">
      <seq>gttctatgctatcaaactgaaattggattatcagttgaaacaaaaaaaaacagaatatcaatcaccttatatgatccaagatataaatgccatgtcagctacactatcactcacctaaaggctgaaagccgaacagaaataaagcagaagaagcagctccagtaatccacataaactcagtcctctctaatatttgttgctacaagaagaaaaagtagatatacaccccaccacacattattcatattcattgaaatcacttaaaatgatctattggattggtttgaagatgaggaagacttggcttttgcaaaatcaacgagatctttgaagagtgcgtcctcgggtttctctggtttggatggtgaagaagaattaatagagagattctttgtttgtccaactatgttgtcataggaagtcgatccagtttttgcaggaggggagccaccagaaacatgtttctcaaagtactgctgtctctgatcatatctggccggtggtggagggagtgcggtaggaggaggagcatccaaggtgctggaggcaagttatcagcagatttggcatttgaattggattcattgtggttgttttttccagtaaacatagatgcagtggggttcaagaagtcctcatcggcagttggatttagcaaatcatccggagggggtgcagatgaagatggcttgggacttgaccatgggatggaactcgcattgtttgaattagtttgaagcagcgataggtgaagatccttctgttcccagtgatctttctgattcaaaacgtgtcaccacttgaggataatcaaacatttaccatctgtaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="45307" stop="43876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44990" g_stop="44176" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="835" r_length="813" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E576116" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44990" e_stop="44176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATTAGCAGTTGAAACAAAACAAAAAAACAGAAATATTAACCATCTTATATGATCCAAGATATAAATGTCATGTCAGCTACACTATCACTCACCTAAAGGCTGAAAGCCGAACAGAAAATAAAGCAGAAGAAGCAGCACCAGTAATCCATA-AAACTCAGTCCTCTCTAATATTTATTGCTACAAGAAGAAAAAGTAGATATACACCCCACCACACATTATTCATATTCATTGAAATCACTCAAAATGATCTATTGGATTGGTTTGAAGATGAGGAAGACTTGGCTTTTGCAAAATCAACAAGATCTTTGAAGAGTGCGTCCTCAGGTTTCTCTGGTTTGGATGGTGAAGAAGAATTAATAGAGAGATTCTTTGTTTGTCCAACTATGCTGTCATAGGAACTCGATCCAGTTCTTGCGGGAGGGGAGCCACCAGAAACATGTTTCTCAAAGTACTGCTGTCTCTGATCATATCTGGCTGGTGGTGGAGGGATTGCGGTAGGAGGAGGAGCATCCCAAGGTGCTGGAGGCAAGTTATCAGCAGATTTGGCTTTTGAATTGGATTCATTCTGGTTGTTTTTTCCAGTAAACATAGATGCAGTGGGGTTCAAGAAGTTCTCATCAGCAGTTGGATTTAGCAAATCATCTGGAGGGGGTGCAGATGAAGATGGCTTGGGACTTGACCATGGGATGGAACTCGCATTGTTTGAATTAG-TTGAAGCAGCAATAGGTGATGATCCTTCTGTTCCCATTGATCTTTCAGATTC-AAACCTGTCACCGC-TGA-GATAATCAACCATTTTCCCATCCGTAAAAAC</genome_strand>
        <mrna_strand>TTGGATTATCAGTTGAAAC-AAA-AAA-AAACAG-AATATCAATCACCTTATATGATCCAAGATATAAATGCCATGTCAGCTACACTATCACTCACCTAAAGGCTGAAAGCCGAACAG-AAATAAAGCAGAAGAAGCAGCTCCAGTAATCCACATAAACTCAGTCCTCTCTAATATTTGTTGCTACAAGAAGAAAAAGTAGATATACACCCCACCACACATTATTCATATTCATTGAAATCACTTAAAATGATCTATTGGATTGGTTTGAAGATGAGGAAGACTTGGCTTTTGCAAAATCAACGAGATCTTTGAAGAGTGCGTCCTCGGGTTTCTCTGGTTTGGATGGTGAAGAAGAATTAATAGAGAGATTCTTTGTTTGTCCAACTATGTTGTCATAGGAAGTCGATCCAGTTTTTGCAGGAGGGGAGCCACCAGAAACATGTTTCTCAAAGTACTGCTGTCTCTGATCATATCTGGCCGGTGGTGGAGGGAGTGCGGTAGGAGGAGGAGCAT-CCAAGGTGCTGGAGGCAAGTTATCAGCAGATTTGGCATTTGAATTGGATTCATTGTGGTTGTTTTTTCCAGTAAACATAGATGCAGTGGGGTTCAAGAAGTCCTCATCGGCAGTTGGATTTAGCAAATCATCCGGAGGGGGTGCAGATGAAGATGGCTTGGGACTTGACCATGGGATGGAACTCGCATTGTTTGAATTAGTTTGAAGCAGCGATAGGTGAAGATCCTTCTGTTCCCAGTGATCTTTCTGATTCAAAACGTGTCACCACTTGAGGATAATCAAACA-TTTACCATCTGTAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575156" ref_strand="+" ref_description="SGN-E575156 [34737]">
      <seq>ctatcanactgaaattggattatcagttgaaagaataaaaaacagaatatcaatcaccttatatgatccaagatataaatgccatgtcagctacactatcactcacctaaaggctgaaagccgaacagaaataaagcagaagaagcagctccagtaatccacataaactcagtcctctctaatatttattgctacaagaagaaaaagtagatatacaccccaccacacattattcatattcattgagatacacttaaaatgatctattggattggtttgaagatgaggaagacttggcttttgcaaaatcaacgagatctttgaagagtgcgtcctcgggtttctctggtttggatggtgaagaagaattaatagagagattctttgtttgtccaactatgttgtcataggaagtcgatccagtttttgcaggaggggagccaccagaaacatgtttctcaaagtactgctgtctctgatcatatctggccggtggtggagggagtgcggtaggaggaggagcatcccaaggtgctggaggcaagttatcagcagatttggcatttgaattggattcattgtggttgttttttccagtaaacatagatgcagtggggttcaagaagtcctcatcggcagttggatttagcaaatcatccggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="45271" stop="44039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45005" g_stop="44339" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="663" r_length="663" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E575156" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45005" e_stop="44339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCACACACTATGTTGGATTAGCAGTTGAAACAAAACAAAAAAACAGAAATATTAACCATCTTATATGATCCAAGATATAAATGTCATGTCAGCTACACTATCACTCACCTAAAGGCTGAAAGCCGAACAGAAAATAAAGCAGAAGAAGCAGCACCAGTAATCCATA-AAACTCAGTCCTCTCTAATATTTATTGCTACAAGAAGAAAAAGTAGATATACACCCCACCACACATTATTCATATTCATTGAAAT-CACTCAAAATGATCTATTGGATTGGTTTGAAGATGAGGAAGACTTGGCTTTTGCAAAATCAACAAGATCTTTGAAGAGTGCGTCCTCAGGTTTCTCTGGTTTGGATGGTGAAGAAGAATTAATAGAGAGATTCTTTGTTTGTCCAACTATGCTGTCATAGGAACTCGATCCAGTTCTTGCGGGAGGGGAGCCACCAGAAACATGTTTCTCAAAGTACTGCTGTCTCTGATCATATCTGGCTGGTGGTGGAGGGATTGCGGTAGGAGGAGGAGCATCCCAAGGTGCTGGAGGCAAGTTATCAGCAGATTTGGCTTTTGAATTGGATTCATTCTGGTTGTTTTTTCCAGTAAACATAGATGCAGTGGGGTTCAAGAAGTTCTCATCAGCAGTTGGATTTAGCAAATCATCTGGAG</genome_strand>
        <mrna_strand>CTATCANAC-TGAAATTGGATTATCAGTTGAAAGAATA-AA-AAA-CAG-AATATCAATCACCTTATATGATCCAAGATATAAATGCCATGTCAGCTACACTATCACTCACCTAAAGGCTGAAAGCCGAACAG-AAATAAAGCAGAAGAAGCAGCTCCAGTAATCCACATAAACTCAGTCCTCTCTAATATTTATTGCTACAAGAAGAAAAAGTAGATATACACCCCACCACACATTATTCATATTCATTGAGATACACTTAAAATGATCTATTGGATTGGTTTGAAGATGAGGAAGACTTGGCTTTTGCAAAATCAACGAGATCTTTGAAGAGTGCGTCCTCGGGTTTCTCTGGTTTGGATGGTGAAGAAGAATTAATAGAGAGATTCTTTGTTTGTCCAACTATGTTGTCATAGGAAGTCGATCCAGTTTTTGCAGGAGGGGAGCCACCAGAAACATGTTTCTCAAAGTACTGCTGTCTCTGATCATATCTGGCCGGTGGTGGAGGGAGTGCGGTAGGAGGAGGAGCATCCCAAGGTGCTGGAGGCAAGTTATCAGCAGATTTGGCATTTGAATTGGATTCATTGTGGTTGTTTTTTCCAGTAAACATAGATGCAGTGGGGTTCAAGAAGTCCTCATCGGCAGTTGGATTTAGCAAATCATCCGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218385" ref_strand="+" ref_description="SGN-E218385 [cLEL-18-J4](-)">
      <seq>agaaacatgtttctggtggctcccctcccgcaagaaccggatcgagttcctatgacagcatagttggacaaacaaagaatctctctattaattcttcttcaccatccaaaccagagaaacctgaggacgcactcttcaaagatcttgttgattttgcaaaagccaagtcttcctcatcttcaaaccaatccaatagatcattttgagtgatttcaatgaatatgaataatgtgtggtggggtgtatatctactttttcttcttgtagcaataaatattagagaggactgagttttatggattactggtgctgcttcttctgctttattttctgttcggctttcagcctttaggtgagtgatagtgtagctgacatgacatttatatcttggatcatataagatggttaatatttctgttttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="44243" stop="45263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44543" g_stop="44963" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="422" polyA_stop="440"/>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E218385" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44543" e_stop="44963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACATGTTTCTGGTGGCTCCCCTCCCGCAAGAACTGGATCGAGTTCCTATGACAGCATAGTTGGACAAACAAAGAATCTCTCTATTAATTCTTCTTCACCATCCAAACCAGAGAAACCTGAGGACGCACTCTTCAAAGATCTTGTTGATTTTGCAAAAGCCAAGTCTTCCTCATCTTCAAACCAATCCAATAGATCATTTTGAGTGATTTCAATGAATATGAATAATGTGTGGTGGGGTGTATATCTACTTTTTCTTCTTGTAGCAATAAATATTAGAGAGGACTGAGTTTTATGGATTACTGGTGCTGCTTCTTCTGCTTTATTTTCTGTTCGGCTTTCAGCCTTTAGGTGAGTGATAGTGTAGCTGACATGACATTTATATCTTGGATCATATAAGATGGTTAATATTTCTGTTTT</genome_strand>
        <mrna_strand>AGAAACATGTTTCTGGTGGCTCCCCTCCCGCAAGAACCGGATCGAGTTCCTATGACAGCATAGTTGGACAAACAAAGAATCTCTCTATTAATTCTTCTTCACCATCCAAACCAGAGAAACCTGAGGACGCACTCTTCAAAGATCTTGTTGATTTTGCAAAAGCCAAGTCTTCCTCATCTTCAAACCAATCCAATAGATCATTTTGAGTGATTTCAATGAATATGAATAATGTGTGGTGGGGTGTATATCTACTTTTTCTTCTTGTAGCAATAAATATTAGAGAGGACTGAGTTTTATGGATTACTGGTGCTGCTTCTTCTGCTTTATTTTCTGTTCGGCTTTCAGCCTTTAGGTGAGTGATAGTGTAGCTGACATGACATTTATATCTTGGATCATATAAGATGGTTAATATTTCTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301973" ref_strand="+" ref_description="SGN-E301973 [cLEX-3-H20]">
      <seq>agtgtgcatttttccttttttttcttagcttccaaaaatggagtatcaacattatcccttaattatctttatctcacttgttctcttcctctcctctttgttttttctgtctcaaaaatggaaatctgcaaacaaaaagttgcctcctggaccatggagactaccttttataggaaacatgcatcaactaatgagcgatttaccacatcgttcacttagaactctatcgaaaaaatatggcccaatcatgcacttacgtcttgggaatatttcaaccattgttgtatcgtcaccagaaatggcaaaagaagtcatgaaaactcaagacctccattttgtagatcggccacaaattatgtccgcgagtatcatattttatgattgcacggacataggctttagttcctatggagattactggagaaatatgcgaaaggtttgtgtactagaacttcttagtacaaaaatggtcaaatcatctgcttcaattcgacaagaggagatatcaaatctcatttcctctctccgttccactgcacctgactcgttgatcaacttatccaacaagatcttttggtttacaaataccgtaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="55698" stop="54516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55398" g_stop="54816" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E301973" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55398" e_stop="54816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTGCATTTTTCCTTTTTTTTCTGAGCTTCCAAAAATGGAGTATCAACATTATCCCTTAATTATCTTTATCTCACTTGTTCTCTTCCTCTCCTCTTTGTTTTTTCTGTCTCAAAAATGGAAATCTGCAAACAAAAAGTTGCCCCCTGGACCATGGAGACTACCTTTTATAGGAAACATGCATCAACTAATGAGCGATTTACCACATCGTTCACTTAGAACTCTATCGAAAAAATATGGCCCAATCATGCACTTACGTCTTGGGAATATTTCAACCATTGTTGTATCGTCACCAGAAATGGCAAAAGAAGTCATGAAAACTCAAGACCTCCATTTTGTAGATCGGCCACAAATTATGTCCGCGAGTATCATATTTTATGATTGCACGGACATAGGCTTTAGTTCCTATGGAGATTACTGGAGAAATATGCGAAA-----G-G---T-----TTCTTAGTACAAAAATGGTCAAATCATCTGCTTCAATTCGACAAGAGGAGATATCAAATCTCATTTCCTCTCTCCGTTCCACTGCACCTGACTCGTTGATCAACTTATCCAACTAGATCTTTTGGTTTACAAATACCGTAACTTG</genome_strand>
        <mrna_strand>AGTGTGCATTTTTCCTTTTTTTTCTTAGCTTCCAAAAATGGAGTATCAACATTATCCCTTAATTATCTTTATCTCACTTGTTCTCTTCCTCTCCTCTTTGTTTTTTCTGTCTCAAAAATGGAAATCTGCAAACAAAAAGTTGCCTCCTGGACCATGGAGACTACCTTTTATAGGAAACATGCATCAACTAATGAGCGATTTACCACATCGTTCACTTAGAACTCTATCGAAAAAATATGGCCCAATCATGCACTTACGTCTTGGGAATATTTCAACCATTGTTGTATCGTCACCAGAAATGGCAAAAGAAGTCATGAAAACTCAAGACCTCCATTTTGTAGATCGGCCACAAATTATGTCCGCGAGTATCATATTTTATGATTGCACGGACATAGGCTTTAGTTCCTATGGAGATTACTGGAGAAATATGCGAAAGGTTTGTGTACTAGAACTTCTTAGTACAAAAATGGTCAAATCATCTGCTTCAATTCGACAAGAGGAGATATCAAATCTCATTTCCTCTCTCCGTTCCACTGCACCTGACTCGTTGATCAACTTATCCAACAAGATCTTTTGGTTTACAAATACCGTAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278291" ref_strand="+" ref_description="SGN-E278291 [cLEL-2-G7]">
      <seq>tttttttttttttttttatttaatatattatgtatagtcataataaagaaaatttacaaggtactgaaaatttataaaagaacaaataaagaaatttaaacgtagtgaaagttaggcgagttaaattatgacccgcaattttaatcaatcacagctcaatccatttcaactcgatcatttgccacttacaatgttgtgtattacttcatcaatttgttgtgaaagaggaatctgggcatcaagatgcaactttgttcctaatcccttgagcaataatagaatactttgtgaacttttgaccacacttgcctcatgaacaataacttcaaaactatccatttgaatgtcatttgatgggcgatcttttcaattgaattcccctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="+" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="60646" stop="61621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60945" g_stop="61321" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="385" r_length="378" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="+" ref_id="SGN-E278291" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60945" e_stop="61321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATTTTATTTAATATATTATATATAGTCATAATAAAGAAAATTTACAAGGTACTGAAAATTTATAAAAGAACAAATAAAGAAATTTAAACTTAGTGAAAGTTAGGCGAGTTAAATTATGACCCGCAATTTTAATCAATCACAGCTCAATCCATTTCAACTCGCTCATTTGCCACTTACAATGTTTTGTATTACTTCATCAATTTGTTGTGAAAGAGGAATCTGGGCATCAAGATGCAACTTTGTTCCTAATCCCTTGAGCAATAATAGAATACTTCTTGAACTTTTGACCTCGCTTGCCTCATGAACAATAACTTCAAAACTATCCATTTCAATGTCATTTGGT-GGTGATTTCTTCAATTGAATTCCCCTCTA</genome_strand>
        <mrna_strand>TTTTTTTTTTATTTAATATATTATGTATAGTCATAATAAAGAAAATTTACAAGGTACTGAAAATTTATAAAAGAACAAATAAAGAAATTTAAACGTAGTGAAAGTTAGGCGAGTTAAATTATGACCCGCAATTTTAATCAATCACAGCTCAATCCATTTCAACTCGATCATTTGCCACTTACAATGTTGTGTATTACTTCATCAATTTGTTGTGAAAGAGGAATCTGGGCATCAAGATGCAACTTTGTTCCTAATCCCTTGAGCAATAATAGAATACTTTGTGAACTTTTGACCACACTTGCCTCATGAACAATAACTTCAAAACTATCCATTTGAATGTCATTTGATGGGCGATCTTTTCAATTGAATTCCCCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623854" ref_strand="+" ref_description="SGN-E623854 [88998]">
      <seq>gatgatgtggttgctgaatggacagaagtgaaaggtaatttgtttcttgatgtccactgttatgtgagtggaccgaatcccctacaagagctagctgccgagttcagataccatatattctccaaggaattgccattggtacttgaggctgtgctctatggggattcagatttcttcaaggagcatgaggaactaatgaatgctactgttagagtctattttcattctagctcgaagaagtacaaccgtgtagaatgttggggtcctctaaaagatgcagctaagggaagacaaggggattatatcaatggtttgttatcgacaagcaaggaagattttcaacctccaaaattccagggaagtgtaaaatcaatcttccaagctcttttcaccttccttctctgagctaatacactaaggatctctcttgaaacacatattagagtcatgggatcctacatttcgatgacttgtaaagacgagaattgtttgcaaggtcattagattcatttacatgtatgtattgcattctttcgaatgtgctcttgacagacaattcttgtaaaaaccaaatactattttcccttctacatatcaatcagcaattgttccaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="63652" stop="26411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63352" g_stop="63215" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63214" i_stop="62776" i_length="439">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62775" g_stop="62629" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="285" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62628" i_stop="62240" i_length="389">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62239" g_stop="62106" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="419" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62105" i_stop="62035" i_length="71">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.535" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62034" g_stop="61818" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="635" r_length="216" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E623854" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63352" e_stop="63215"/>
          <exon e_start="62775" e_stop="62629"/>
          <exon e_start="62239" e_stop="62106"/>
          <exon e_start="62034" e_stop="61818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACGTGGTTGCTGAATGGACAGAAGTGAAAGGTAATTTGTTTCTTGATGTCCACTGTTATGTGAGTGGACCGAATCCCCTACAAGAGCTAGCTGCCGAGTTCAGATACCATATATTCTCCAAGGAATTGCCATTGGTAAATTCTTAAGACATTTGTACCCCTCTTACCATTCTGTGTAATTTAAAACGATGCTTTGACTTGGAAAAAAAAATAAAGAAAAGCTTCGATTTTGGACCATATTTAAAATTTGACTTGCATAGCTGCAATATGTTGCACCTTGTAAGTCTGCAAGTCACACTGATAAAACTCATTTCATTTGTCAAGCATTATTCTGATTTTGGAGTTACAAAACTCTTTCTTAAAGAGAACGGAGAGGATTGAACAGGCTGAATAAAATCTGCTCATAAAGTTTATCTCCCGTCCAAGTGATACTTCTTGAATCATTTCACTGGATCTTAAGGACTTTGTTCTCATTCCGTTGTTGAACTGTACTTTGGTTTGCACCTCTAAATTAGCATATGCAATTTTCTTACAGTATTAAGATTGTGATTAATTTGCCTTTCTGAACTACCAGGTACTTGAGGCTGTGCTCTATGGGGATTCAGATTTCTTCAAGGAGCATGAAGAACTAATGAATGCTACTGTTAGAGTCTATTTTCATTCTAGCTCGAAGAAGTACAACCGTGTAGAATGTTGGGGTCCTCTAAAAGATGCAGCTAAGGTAGCACATAATTACAACAATATCATCTTTTACTCGTTTGTCCTAAAGAAACATTCAGGCTTCAGCACATAGATAAAAAATGAAAATGAAATCTCTCGTTTGAATTTATTAGATAAAATGCCACTCTTTTATTCCATTTTGTGTGCCAAACTTACTAGTTCGCGAGTCTTTGTTTGATCATGGTTTTCCTACACATGTTTTTTTCATTTCCAAGTTTTAGTATGTGTGGTTAATTAAAGAAAGATAACACACTTGGTGCTTGAACTCGACTTAAAAAATGTTGTTTTGATGATCATACTGAACATTGGGGCAAGGGAGTGCTATTGAATCGAGAACTATATTCAAAGTTATTCTTCGAGATTTTTATACAACTTATTCATGTTTTCCAGGGAAGACAAGGGGATTATATCAATGGTTTGTTATCGACAAGCAAGGAAGATTTTCAACCTCTGAAATTCCAGGGAAGTGCAAAATCAATCTTCCAAGCTCTTTTCACCTTCCTTCTCTGAGCTAATACACTAAGGTGAGAGACTGCAAAGAGTTTATAGATTTAGGTCGTTTCGTCCTAATAATTTTACTTTTTGCACTTGGAAGGATCTCTCTTGAAACACATATTAGAGTCATGGGATCCTACATTTCGATGACTTGTAAAGACGAGAATTGTTTGCAAGGTCATTAGATTCTTTTACATGTATGTATTGCATTCTTTCGAATGTGCTCTTGACTGACAATTCTTGTAAAAAACCATATACTATTTTCCCTTCCACATATCAATCAGCAATTGTTCCATAACTCACTGCTCCATACCATA</genome_strand>
        <mrna_strand>GATGATGTGGTTGCTGAATGGACAGAAGTGAAAGGTAATTTGTTTCTTGATGTCCACTGTTATGTGAGTGGACCGAATCCCCTACAAGAGCTAGCTGCCGAGTTCAGATACCATATATTCTCCAAGGAATTGCCATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTGAGGCTGTGCTCTATGGGGATTCAGATTTCTTCAAGGAGCATGAGGAACTAATGAATGCTACTGTTAGAGTCTATTTTCATTCTAGCTCGAAGAAGTACAACCGTGTAGAATGTTGGGGTCCTCTAAAAGATGCAGCTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................GGAAGACAAGGGGATTATATCAATGGTTTGTTATCGACAAGCAAGGAAGATTTTCAACCTCCAAAATTCCAGGGAAGTGTAAAATCAATCTTCCAAGCTCTTTTCACCTTCCTTCTCTGAGCTAATACACTAAG.......................................................................GATCTCTCTTGAAACACATATTAGAGTCATGGGATCCTACATTTCGATGACTTGTAAAGACGAGAATTGTTTGCAAGGTCATTAGATTCATTTACATGTATGTATTGCATTCTTTCGAATGTGCTCTTGACAGACAATTCTTGT-AAAAACCAAATACTATTTTCCCTTCTACATATCAATCAGCAATTGTTCCAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347495" ref_strand="+" ref_description="SGN-E347495 [cTOF-33-J8]">
      <seq>catgaagaactaatgaatgctactgttagagtctattttcattctagctcgaagaagtacaaccgtgtagaatgttggggtcctctaaaagatgcagctaagggaagacaaggggattatatcaatggtttgttatcgacaagcaaggaagattttcaacctctgaaattccagggaagtgcaaaatcaatcttccaagctcttttcaccttccttctctgagctaatacactaaggtgagagactgcaaagagtttatagatttaggtcgtttcgtcctaataattctactttttgcacttggaaggatctctcttgaaacacatattagagtcatgggatcctacatttcgatgacttgtaaagacgagaattgtttgcaaggtcattagattcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0072F06-LxqYn/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0072F06.1" temp_strand="-" temp_description="C04HBa0072F06.1  CU929468.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0072F06 sequenced_by:sanger upload_account_name:uk">
        <position start="63030" stop="61639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62730" g_stop="62629" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62628" i_stop="62240" i_length="389">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62239" g_stop="61938" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="404" r_length="302" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0072F06.1" gen_strand="-" ref_id="SGN-E347495" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0072F06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62730" e_stop="62629"/>
          <exon e_start="62239" e_stop="61938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAAGAACTAATGAATGCTACTGTTAGAGTCTATTTTCATTCTAGCTCGAAGAAGTACAACCGTGTAGAATGTTGGGGTCCTCTAAAAGATGCAGCTAAGGTAGCACATAATTACAACAATATCATCTTTTACTCGTTTGTCCTAAAGAAACATTCAGGCTTCAGCACATAGATAAAAAATGAAAATGAAATCTCTCGTTTGAATTTATTAGATAAAATGCCACTCTTTTATTCCATTTTGTGTGCCAAACTTACTAGTTCGCGAGTCTTTGTTTGATCATGGTTTTCCTACACATGTTTTTTTCATTTCCAAGTTTTAGTATGTGTGGTTAATTAAAGAAAGATAACACACTTGGTGCTTGAACTCGACTTAAAAAATGTTGTTTTGATGATCATACTGAACATTGGGGCAAGGGAGTGCTATTGAATCGAGAACTATATTCAAAGTTATTCTTCGAGATTTTTATACAACTTATTCATGTTTTCCAGGGAAGACAAGGGGATTATATCAATGGTTTGTTATCGACAAGCAAGGAAGATTTTCAACCTCTGAAATTCCAGGGAAGTGCAAAATCAATCTTCCAAGCTCTTTTCACCTTCCTTCTCTGAGCTAATACACTAAGGTGAGAGACTGCAAAGAGTTTATAGATTTAGGTCGTTTCGTCCTAATAATTTTACTTTTTGCACTTGGAAGGATCTCTCTTGAAACACATATTAGAGTCATGGGATCCTACATTTCGATGACTTGTAAAGACGAGAATTGTTTGCAAGGTCATTAGATTCTTTTACAT</genome_strand>
        <mrna_strand>CATGAAGAACTAATGAATGCTACTGTTAGAGTCTATTTTCATTCTAGCTCGAAGAAGTACAACCGTGTAGAATGTTGGGGTCCTCTAAAAGATGCAGCTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................GGAAGACAAGGGGATTATATCAATGGTTTGTTATCGACAAGCAAGGAAGATTTTCAACCTCTGAAATTCCAGGGAAGTGCAAAATCAATCTTCCAAGCTCTTTTCACCTTCCTTCTCTGAGCTAATACACTAAGGTGAGAGACTGCAAAGAGTTTATAGATTTAGGTCGTTTCGTCCTAATAATTCTACTTTTTGCACTTGGAAGGATCTCTCTTGAAACACATATTAGAGTCATGGGATCCTACATTTCGATGACTTGTAAAGACGAGAATTGTTTGCAAGGTCATTAGATTCTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>278</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="16497" PGL_stop="15963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16497" e_stop="15963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="16497" e_stop="15963" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16497" stop="15963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16497" stop="15963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552330" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCTGACAAAGTTGCTTCAGACACATCAGGCTTTTCACCTGAGCATGGTAGAGCGATCATGGGTGAAGAAGTTGGTTCTTGATTAAGACGTGATATAAGTTGTGTGTGTGAAAGAGCCATTGTATGTGGATTGTACTCTAGTTGCTACCATCAAGCCAGGTAACATGACAAGTCAGACAGATGGGTGAAAAATGTGATACTGGATTGGGATAAGCTGAGTTGAGGATTTTCACAGAGTGAGTCTAGTTCTAGGTCATTTCAGAAGGTACAGAAGAGCAAATGCTAGGGATCCTGGAACTACAAATCTGCTAGAGGTATTAATGTTGGATTGGTGAAGGCCTAAGCCCCTAAAGGATGGCTTTGCTTGGTCATTGTGAGTGTGACTAGCGGTACAAAATGAAAATGATGGAAGAATACGCCATATGATCTTTGGATTCGAGTTGTTGCACTTAAACTTGTGTAGAAGTTGAATAAATATACACACATATTCTACATCACATAATATATACAAGACATTGCCGTGTAGAACGTATT</gDNA_template>
            <first_frame> V  L  T  K  L  L  Q  T  H  Q  A  F  H  L  S  M  V  E  R  S  W  V  K  K  L  V  L  D  *  D  V  I  *  V  V  C  V  K  E  P  L  Y  V  D  C  T  L  V  A  T  I  K  P  G  N  M  T  S  Q  T  D  G  *  K  M  *  Y  W  I  G  I  S  *  V  E  D  F  H  R  V  S  L  V  L  G  H  F  R  R  Y  R  R  A  N  A  R  D  P  G  T  T  N  L  L  E  V  L  M  L  D  W  *  R  P  K  P  L  K  D  G  F  A  W  S  L  *  V  *  L  A  V  Q  N  E  N  D  G  R  I  R  H  M  I  F  G  F  E  L  L  H  L  N  L  C  R  S  *  I  N  I  H  T  Y  S  T  S  H  N  I  Y  K  T  L  P  C  R  T  Y  </first_frame>
            <second_frame>  F  *  Q  S  C  F  R  H  I  R  L  F  T  *  A  W  *  S  D  H  G  *  R  S  W  F  L  I  K  T  *  Y  K  L  C  V  *  K  S  H  C  M  W  I  V  L  *  L  L  P  S  S  Q  V  T  *  Q  V  R  Q  M  G  E  K  C  D  T  G  L  G  *  A  E  L  R  I  F  T  E  *  V  *  F  *  V  I  S  E  G  T  E  E  Q  M  L  G  I  L  E  L  Q  I  C  *  R  Y  *  C  W  I  G  E  G  L  S  P  *  R  M  A  L  L  G  H  C  E  C  D  *  R  Y  K  M  K  M  M  E  E  Y  A  I  *  S  L  D  S  S  C  C  T  *  T  C  V  E  V  E  *  I  Y  T  H  I  L  H  H  I  I  Y  T  R  H  C  R  V  E  R  I </second_frame>
            <third_frame>   S  D  K  V  A  S  D  T  S  G  F  S  P  E  H  G  R  A  I  M  G  E  E  V  G  S  *  L  R  R  D  I  S  C  V  C  E  R  A  I  V  C  G  L  Y  S  S  C  Y  H  Q  A  R  *  H  D  K  S  D  R  W  V  K  N  V  I  L  D  W  D  K  L  S  *  G  F  S  Q  S  E  S  S  S  R  S  F  Q  K  V  Q  K  S  K  C  *  G  S  W  N  Y  K  S  A  R  G  I  N  V  G  L  V  K  A  *  A  P  K  G  W  L  C  L  V  I  V  S  V  T  S  G  T  K  *  K  *  W  K  N  T  P  Y  D  L  W  I  R  V  V  A  L  K  L  V  *  K  L  N  K  Y  T  H  I  F  Y  I  T  *  Y  I  Q  D  I  A  V  *  N  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0072F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="23478" PGL_stop="25442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23478" e_stop="24286"/>
            <exon e_start="25077" e_stop="25442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.958" e_score="0.924"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="23478" e_stop="24286" e_length="809"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.958">
            <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="25077" e_stop="25442" e_length="366"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23478" stop="24083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23498" stop="23794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23507" stop="24286"/>
              <exon start="25077" stop="25130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23566" stop="24286"/>
              <exon start="25077" stop="25258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23576" stop="24286"/>
              <exon start="25077" stop="25209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23579" stop="24286"/>
              <exon start="25077" stop="25115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23580" stop="24286"/>
              <exon start="25077" stop="25210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23580" stop="24286"/>
              <exon start="25077" stop="25195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23580" stop="24286"/>
              <exon start="25077" stop="25183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23580" stop="24286"/>
              <exon start="25077" stop="25129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23581" stop="24286"/>
              <exon start="25077" stop="25143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="23916" stop="24286"/>
              <exon start="25077" stop="25440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23936" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23965" stop="24286"/>
              <exon start="25077" stop="25389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23965" stop="24286"/>
              <exon start="25077" stop="25389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23970" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23991" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271999" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23993" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23994" stop="24286"/>
              <exon start="25077" stop="25442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23994" stop="24286"/>
              <exon start="25077" stop="25210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24014" stop="24286"/>
              <exon start="25077" stop="25387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24014" stop="24286"/>
              <exon start="25077" stop="25262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24014" stop="24286"/>
              <exon start="25077" stop="25218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24014" stop="24231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24018" stop="24286"/>
              <exon start="25077" stop="25210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24019" stop="24286"/>
              <exon start="25077" stop="25418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24044" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24052" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560545" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24061" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24067" stop="24286"/>
              <exon start="25077" stop="25399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24073" stop="24286"/>
              <exon start="25077" stop="25216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24111" stop="24286"/>
              <exon start="25077" stop="25438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24111" stop="24286"/>
              <exon start="25077" stop="25407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24122" stop="24286"/>
              <exon start="25077" stop="25425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24133" stop="24286"/>
              <exon start="25077" stop="25423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24133" stop="24286"/>
              <exon start="25077" stop="25423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24134" stop="24286"/>
              <exon start="25077" stop="25418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24162" stop="24286"/>
              <exon start="25077" stop="25436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24168" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24168" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24169" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24172" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300759" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24185" stop="24286"/>
              <exon start="25077" stop="25423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24202" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24203" stop="24286"/>
              <exon start="25077" stop="25436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24246" stop="24286"/>
              <exon start="25077" stop="25254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25077" stop="25423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25077" stop="25423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25081" stop="25423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25083" stop="25436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25088" stop="25419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25129" stop="25423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTTCCATATGGACTTTCTTTCCCTCAAGCCCATTTTACGAAACCCTAGCTCCCTTATAAGCCTAACAATCCGTCATTTTTCATCTTCACACATACACACACTCTGTAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTCGTGAAACAGAGGAGGAGAAATGGGTTCCGGTCACTAAGCTAGGAAGGCTTGTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG : GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTCATGTTTTTGCTTGATTAGT</gDNA_template>
            <first_frame> *  F  H  M  D  F  L  S  L  K  P  I  L  R  N  P  S  S  L  I  S  L  T  I  R  H  F  S  S  S  H  I  H  T  L  C  K  P  *  L  H  T  L  Y  L  Q  S  W  R  K  E  E  E  G  R  E  V  G  S  V  V  D  L  E  A  V  V  V  E  V  E  T  A  V  D  G  A  V  A  A  V  V  H  V  V  K  Q  R  R  R  N  G  F  R  S  L  S  *  E  G  L  *  K  M  A  K  F  A  H  L  S  K  F  T  F  T  H  S  Q  S  R  S  S  K  S  *  I  P  S  S  V  H  L  S  R  M  R  *  *  K  S  C  R  F  R  S  R  P  V  P  G  R  E  P  G  L  R  R  L  L  L  *  V  T  G  M  V  T  L  V  W  V  L  S  A  R  R  K  S  L  L  L  F  V  E  E  L  Y  W  L  N  Y  Q  *  F  Q  *  G  E  V  T  G  V  T  R  L  V  S  H  T  L  C  L  A  R  L  Q  G  N  V  G  L  L  L  *  G  W  C  L  L  L  V  V  L  V  *  L  L  L  V  S  P  R  R  S  F  S  L  L  V  S  K  M  S  S  H  L  L  A  D  P  P  K  P  L  A  T  S  L  R :   L  P  L  I  V  *  *  R  L  T  G  S  *  P  Q  T  S  G  K  R  L  G  S  P  N  L  H  S  K  S  T  L  I  S  W  Q  N  L  P  I  R  L  L  C  T  P  L  K  R  Q  H  L  R  G  L  R  L  D  S  F  *  M  *  Y  E  S  F  C  R  F  V  L  V  V  L  F  S  D  T  L  V  F  *  I  L  F  C  F  *  G  I  F  S  A  D  L  Q  N  I  M  F  L  V  L  V  C  F  Q  Q  Y  I  *  I  *  S  H  V  F  A  *  L   </first_frame>
            <second_frame>  S  S  I  W  T  F  F  P  S  S  P  F  Y  E  T  L  A  P  L  *  A  *  Q  S  V  I  F  H  L  H  T  Y  T  H  S  V  N  P  S  C  I  P  Y  T  Y  N  H  G  G  K  R  R  R  G  E  R  W  V  R  S  W  I  W  R  P  W  W  *  R  W  R  P  R  W  T  G  P  W  R  P  S  S  T  S  *  N  R  G  G  E  M  G  S  G  H  *  A  R  K  A  C  E  R  W  Q  N  S  L  T  *  A  N  L  P  S  L  T  P  N  Q  G  V  P  N  H  R  Y  P  H  R  S  I  S  Q  G  *  G  D  E  N  H  A  G  S  E  A  D  P  C  R  A  E  N  Q  V  *  G  V  C  C  C  R  *  R  E  W  S  R  W  F  G  C  *  V  L  E  G  S  R  Y  C  Y  S  W  R  N  Y  I  G  *  T  I  S  D  S  S  E  E  R  L  L  G  *  Q  D  W  *  A  T  H  C  A  L  Q  G  Y  R  E  M  W  V  C  Y  C  E  D  G  A  C  S  S  W  C  W  Y  S  C  C  S  C  P  Q  E  G  P  S  V  C  W  Y  R  R  C  L  H  I  F  S  R  I  H  Q  N  P  W  Q  L  R  *   : G  Y  L  *  L  F  N  E  D  L  R  V  P  D  P  R  L  L  E  R  D  S  V  H  Q  I  S  I  P  R  V  L  *  Y  L  G  K  T  C  Q  *  G  Y  C  V  R  H  *  R  G  S  T  *  E  G  *  G  L  I  H  F  R  C  D  M  S  P  S  V  V  L  F  *  *  F  S  S  L  I  R  *  Y  S  K  F  C  S  V  S  E  G  Y  F  P  Q  T  C  K  T  *  C  S  L  F  W  F  V  F  N  N  T  Y  E  F  D  L  M  F  L  L  D  *  </second_frame>
            <third_frame>   V  P  Y  G  L  S  F  P  Q  A  H  F  T  K  P  *  L  P  Y  K  P  N  N  P  S  F  F  I  F  T  H  T  H  T  L  *  T  L  A  A  Y  L  I  P  T  I  M  A  E  R  G  G  G  E  R  G  G  F  G  R  G  F  G  G  R  G  G  R  G  G  D  R  G  G  R  G  R  G  G  R  R  P  R  R  E  T  E  E  E  K  W  V  P  V  T  K  L  G  R  L  V  K  D  G  K  I  R  S  L  E  Q  I  Y  L  H  S  L  P  I  K  E  F  Q  I  I  D  T  L  I  G  P  S  L  K  D  E  V  M  K  I  M  P  V  Q  K  Q  T  R  A  G  Q  R  T  R  F  K  A  F  V  V  V  G  D  G  N  G  H  V  G  L  G  V  K  C  S  K  E  V  A  T  A  I  R  G  G  I  I  L  A  K  L  S  V  I  P  V  R  R  G  Y  W  G  N  K  I  G  K  P  H  T  V  P  C  K  V  T  G  K  C  G  S  V  T  V  R  M  V  P  A  P  R  G  A  G  I  V  A  A  R  V  P  K  K  V  L  Q  F  A  G  I  E  D  V  F  T  S  S  R  G  S  T  K  T  L  G  N  F  V  K  :  A  T  F  D  C  L  M  K  T  Y  G  F  L  T  P  D  F  W  K  E  T  R  F  T  K  S  P  F  Q  E  Y  F  D  I  L  A  K  P  A  N  K  V  I  V  Y  A  T  E  E  A  A  P  E  R  V  E  A  *  F  I  L  D  V  I  *  V  L  L  S  F  C  S  S  S  S  L  L  *  Y  V  S  I  L  N  F  V  L  F  L  R  D  I  F  R  R  L  A  K  H  N  V  P  C  F  G  L  F  S  T  I  H  M  N  L  I  S  C  F  C  L  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0072F06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23588" stop="24286"/>
                    <exon start="25077" stop="25250"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLAAYLIPTIMAERGGGERGGFGRGFGGRGGRGGDRGGRGRGGRRPRRETEEEKWVPVTKLGRLVKDGKIRSLEQIYLHSLPIKEFQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWKETRFTKSPFQEYFDILAKPANKVIVYATEEAAPERVEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="23585" e_stop="23729"/>
            <exon e_start="23780" e_stop="24286"/>
            <exon e_start="25077" e_stop="25442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.889"/>
          <exon-intron don_prob="0.983" acc_prob="0.958" e_score="0.949"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.889">
            <gDNA_exon_boundary e_start="23585" e_stop="23729" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23730" i_stop="23779" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="23780" e_stop="24286" e_length="507"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.958">
            <gDNA_intron_boundary i_start="24287" i_stop="25076" i_length="790"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="25077" e_stop="25442" e_length="366"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23585" stop="23729"/>
              <exon start="23780" stop="24286"/>
              <exon start="25077" stop="25262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23586" stop="23729"/>
              <exon start="23780" stop="24286"/>
              <exon start="25077" stop="25357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23824" stop="24286"/>
              <exon start="25077" stop="25324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23839" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23839" stop="24286"/>
              <exon start="25077" stop="25358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23842" stop="24286"/>
              <exon start="25077" stop="25431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23845" stop="24286"/>
              <exon start="25077" stop="25098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23848" stop="24286"/>
              <exon start="25077" stop="25184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23867" stop="24286"/>
              <exon start="25077" stop="25104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23888" stop="24286"/>
              <exon start="25077" stop="25262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23888" stop="24286"/>
              <exon start="25077" stop="25120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23892" stop="24286"/>
              <exon start="25077" stop="25132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23893" stop="24286"/>
              <exon start="25077" stop="25389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23893" stop="24286"/>
              <exon start="25077" stop="25341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23915" stop="24286"/>
              <exon start="25077" stop="25382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23915" stop="24257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23916" stop="24286"/>
              <exon start="25077" stop="25440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23936" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23965" stop="24286"/>
              <exon start="25077" stop="25389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23965" stop="24286"/>
              <exon start="25077" stop="25389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23970" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23991" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271999" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23993" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23994" stop="24286"/>
              <exon start="25077" stop="25442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23994" stop="24286"/>
              <exon start="25077" stop="25210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24014" stop="24286"/>
              <exon start="25077" stop="25387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24014" stop="24286"/>
              <exon start="25077" stop="25262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24014" stop="24286"/>
              <exon start="25077" stop="25218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24014" stop="24231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24018" stop="24286"/>
              <exon start="25077" stop="25210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24019" stop="24286"/>
              <exon start="25077" stop="25418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24044" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24052" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560545" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24061" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24067" stop="24286"/>
              <exon start="25077" stop="25399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24073" stop="24286"/>
              <exon start="25077" stop="25216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24111" stop="24286"/>
              <exon start="25077" stop="25438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24111" stop="24286"/>
              <exon start="25077" stop="25407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24122" stop="24286"/>
              <exon start="25077" stop="25425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24133" stop="24286"/>
              <exon start="25077" stop="25423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24133" stop="24286"/>
              <exon start="25077" stop="25423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24134" stop="24286"/>
              <exon start="25077" stop="25418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24162" stop="24286"/>
              <exon start="25077" stop="25436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24168" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24168" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24169" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24172" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300759" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24185" stop="24286"/>
              <exon start="25077" stop="25423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24202" stop="24286"/>
              <exon start="25077" stop="25413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24203" stop="24286"/>
              <exon start="25077" stop="25436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24246" stop="24286"/>
              <exon start="25077" stop="25254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25077" stop="25423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25077" stop="25423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25081" stop="25423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25083" stop="25436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25088" stop="25419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25129" stop="25423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAACCCTAGCTGCATACCTTATACCTACAATCATGGCGGAAAGAGGAGGAGGGGAGAGAGGTGGGTTCGGTCGTGGATTTGGAGGCCGTGGTGGTAGAGGTGGAGACCGCGGTGGACGGGGCCGTGGCGGCCGTCGTCCACGTC : GTGAAAGATGGCAAAATTCGCTCACTTGAGCAAATTTACCTTCACTCACTCCCAATCAAGGAGTTCCAAATCATAGATACCCTCATCGGTCCATCTCTCAAGGATGAGGTGATGAAAATCATGCCGGTTCAGAAGCAGACCCGTGCCGGGCAGAGAACCAGGTTTAAGGCGTTTGTTGTTGTAGGTGACGGGAATGGTCACGTTGGTTTGGGTGTTAAGTGCTCGAAGGAAGTCGCTACTGCTATTCGTGGAGGAATTATATTGGCTAAACTATCAGTGATTCCAGTGAGGAGAGGTTACTGGGGTAACAAGATTGGTAAGCCACACACTGTGCCTTGCAAGGTTACAGGGAAATGTGGGTCTGTTACTGTGAGGATGGTGCCTGCTCCTCGTGGTGCTGGTATAGTTGCTGCTCGTGTCCCCAAGAAGGTCCTTCAGTTTGCTGGTATCGAAGATGTCTTCACATCTTCTCGCGGATCCACCAAAACCCTTGGCAACTTCGTTAAG : GCTACCTTTGATTGTTTAATGAAGACTTACGGGTTCCTGACCCCAGACTTCTGGAAAGAGACTCGGTTCACCAAATCTCCATTCCAAGAGTACTTTGATATCTTGGCAAAACCTGCCAATAAGGTTATTGTGTACGCCACTGAAGAGGCAGCACCTGAGAGGGTTGAGGCTTGATTCATTTTAGATGTGATATGAGTCCTTCTGTCGTTTTGTTCTAGTAGTTCTCTTCTCTGATACGTTAGTATTCTAAATTTTGTTCTGTTTCTGAGGGATATTTTCCGCAGACTTGCAAAACATAATGTTCCTTGTTTTGGTTTGTTTTCAACAATACATATGAATTTGATCTCATGTTTTTGCTTGATTAGT</gDNA_template>
            <first_frame> *  T  L  A  A  Y  L  I  P  T  I  M  A  E  R  G  G  G  E  R  G  G  F  G  R  G  F  G  G  R  G  G  R  G  G  D  R  G  G  R  G  R  G  G  R  R  P  R   : R  E  R  W  Q  N  S  L  T  *  A  N  L  P  S  L  T  P  N  Q  G  V  P  N  H  R  Y  P  H  R  S  I  S  Q  G  *  G  D  E  N  H  A  G  S  E  A  D  P  C  R  A  E  N  Q  V  *  G  V  C  C  C  R  *  R  E  W  S  R  W  F  G  C  *  V  L  E  G  S  R  Y  C  Y  S  W  R  N  Y  I  G  *  T  I  S  D  S  S  E  E  R  L  L  G  *  Q  D  W  *  A  T  H  C  A  L  Q  G  Y  R  E  M  W  V  C  Y  C  E  D  G  A  C  S  S  W  C  W  Y  S  C  C  S  C  P  Q  E  G  P  S  V  C  W  Y  R  R  C  L  H  I  F  S  R  I  H  Q  N  P  W  Q  L  R  *   : G  Y  L  *  L  F  N  E  D  L  R  V  P  D  P  R  L  L  E  R  D  S  V  H  Q  I  S  I  P  R  V  L  *  Y  L  G  K  T  C  Q  *  G  Y  C  V  R  H  *  R  G  S  T  *  E  G  *  G  L  I  H  F  R  C  D  M  S  P  S  V  V  L  F  *  *  F  S  S  L  I  R  *  Y  S  K  F  C  S  V  S  E  G  Y  F  P  Q  T  C  K  T  *  C  S  L  F  W  F  V  F  N  N  T  Y  E  F  D  L  M  F  L  L  D  *  </first_frame>
            <second_frame>  K  P  *  L  H  T  L  Y  L  Q  S  W  R  K  E  E  E  G  R  E  V  G  S  V  V  D  L  E  A  V  V  V  E  V  E  T  A  V  D  G  A  V  A  A  V  V  H  V  :  V  K  D  G  K  I  R  S  L  E  Q  I  Y  L  H  S  L  P  I  K  E  F  Q  I  I  D  T  L  I  G  P  S  L  K  D  E  V  M  K  I  M  P  V  Q  K  Q  T  R  A  G  Q  R  T  R  F  K  A  F  V  V  V  G  D  G  N  G  H  V  G  L  G  V  K  C  S  K  E  V  A  T  A  I  R  G  G  I  I  L  A  K  L  S  V  I  P  V  R  R  G  Y  W  G  N  K  I  G  K  P  H  T  V  P  C  K  V  T  G  K  C  G  S  V  T  V  R  M  V  P  A  P  R  G  A  G  I  V  A  A  R  V  P  K  K  V  L  Q  F  A  G  I  E  D  V  F  T  S  S  R  G  S  T  K  T  L  G  N  F  V  K  :  A  T  F  D  C  L  M  K  T  Y  G  F  L  T  P  D  F  W  K  E  T  R  F  T  K  S  P  F  Q  E  Y  F  D  I  L  A  K  P  A  N  K  V  I  V  Y  A  T  E  E  A  A  P  E  R  V  E  A  *  F  I  L  D  V  I  *  V  L  L  S  F  C  S  S  S  S  L  L  *  Y  V  S  I  L  N  F  V  L  F  L  R  D  I  F  R  R  L  A  K  H  N  V  P  C  F  G  L  F  S  T  I  H  M  N  L  I  S  C  F  C  L  I  S </second_frame>
            <third_frame>   N  P  S  C  I  P  Y  T  Y  N  H  G  G  K  R  R  R  G  E  R  W  V  R  S  W  I  W  R  P  W  W  *  R  W  R  P  R  W  T  G  P  W  R  P  S  S  T  S :   *  K  M  A  K  F  A  H  L  S  K  F  T  F  T  H  S  Q  S  R  S  S  K  S  *  I  P  S  S  V  H  L  S  R  M  R  *  *  K  S  C  R  F  R  S  R  P  V  P  G  R  E  P  G  L  R  R  L  L  L  *  V  T  G  M  V  T  L  V  W  V  L  S  A  R  R  K  S  L  L  L  F  V  E  E  L  Y  W  L  N  Y  Q  *  F  Q  *  G  E  V  T  G  V  T  R  L  V  S  H  T  L  C  L  A  R  L  Q  G  N  V  G  L  L  L  *  G  W  C  L  L  L  V  V  L  V  *  L  L  L  V  S  P  R  R  S  F  S  L  L  V  S  K  M  S  S  H  L  L  A  D  P  P  K  P  L  A  T  S  L  R :   L  P  L  I  V  *  *  R  L  T  G  S  *  P  Q  T  S  G  K  R  L  G  S  P  N  L  H  S  K  S  T  L  I  S  W  Q  N  L  P  I  R  L  L  C  T  P  L  K  R  Q  H  L  R  G  L  R  L  D  S  F  *  M  *  Y  E  S  F  C  R  F  V  L  V  V  L  F  S  D  T  L  V  F  *  I  L  F  C  F  *  G  I  F  S  A  D  L  Q  N  I  M  F  L  V  L  V  C  F  Q  Q  Y  I  *  I  *  S  H  V  F  A  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0072F06.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23595" stop="23729"/>
                    <exon start="23780" stop="24286"/>
                    <exon start="25077" stop="25250"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHTLYLQSWRKEEEGREVGSVVDLEAVVVEVETAVDGAVAAVVHVVKDGKIRSLEQIYLHSLPIKEFQIIDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWKETRFTKSPFQEYFDILAKPANKVIVYATEEAAPERVEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="25437" PGL_stop="23610"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25437" e_stop="25082"/>
            <exon e_start="24821" e_stop="24816"/>
            <exon e_start="24287" e_stop="23610"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.170" acc_prob="0.972" e_score="0.949"/>
          <exon-intron don_prob="0.945" acc_prob="0.000" e_score="0.500"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="25437" e_stop="25082" e_length="356"/>
          </exon>
          <intron i_serial="1" don_prob="0.170" acc_prob="0.972">
            <gDNA_intron_boundary i_start="25081" i_stop="24822" i_length="260"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="24821" e_stop="24816" e_length="6"/>
          </exon>
          <intron i_serial="2" don_prob="0.945" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24815" i_stop="24288" i_length="528"/>
          </intron>
          <exon e_serial="3" e_score="0.944">
            <gDNA_exon_boundary e_start="24287" e_stop="23610" e_length="678"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25437" stop="25082"/>
              <exon start="24821" stop="24816"/>
              <exon start="24287" stop="24114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25432" stop="25082"/>
              <exon start="24821" stop="24816"/>
              <exon start="24287" stop="23846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25431" stop="25082"/>
              <exon start="24821" stop="24816"/>
              <exon start="24287" stop="23896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25429" stop="25082"/>
              <exon start="24821" stop="24816"/>
              <exon start="24287" stop="23878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25420" stop="25082"/>
              <exon start="24821" stop="24816"/>
              <exon start="24287" stop="24202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25419" stop="25082"/>
              <exon start="24821" stop="24816"/>
              <exon start="24287" stop="23887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25406" stop="25082"/>
              <exon start="24821" stop="24816"/>
              <exon start="24287" stop="24133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25402" stop="25082"/>
              <exon start="24821" stop="24816"/>
              <exon start="24287" stop="23753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25371" stop="25082"/>
              <exon start="24821" stop="24816"/>
              <exon start="24287" stop="23866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25329" stop="25082"/>
              <exon start="24821" stop="24816"/>
              <exon start="24287" stop="24048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23934" stop="23610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23859" stop="23610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293453" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAGCAAAAACATGAGATCAAATTCATATGTATTGTTGAAAACAAACCAAAACAAGGAACATTATGTTTTGCAAGTCTGCGGAAAATATCCCTCAGAAACAGAACAAAATTTAGAATACTAACGTATCAGAGAAGAGAACTACTAGAACAAAACGACAGAAGGACTCATATCACATCTAAAATGAATCAAGCCTCAACCCTCTCAGGTGCTGCCTCTTCAGTGGCGTACACAATAACCTTATTGGCAGGTTTTGCCAAGATATCAAAGTACTCTTGGAATGGAGATTTGGTGAACCGAGTCTCTTTCCAGAAGTCTGGGGTCAGGAACCCGTAAGTCTTCATTAAACAATCAAAG : GAAATG : CCTTAACGAAGTTGCCAAGGGTTTTGGTGGATCCGCGAGAAGATGTGAAGACATCTTCGATACCAGCAAACTGAAGGACCTTCTTGGGGACACGAGCAGCAACTATACCAGCACCACGAGGAGCAGGCACCATCCTCACAGTAACAGACCCACATTTCCCTGTAACCTTGCAAGGCACAGTGTGTGGCTTACCAATCTTGTTACCCCAGTAACCTCTCCTCACTGGAATCACTGATAGTTTAGCCAATATAATTCCTCCACGAATAGCAGTAGCGACTTCCTTCGAGCACTTAACACCCAAACCAACGTGACCATTCCCGTCACCTACAACAACAAACGCCTTAAACCTGGTTCTCTGCCCGGCACGGGTCTGCTTCTGAACCGGCATGATTTTCATCACCTCATCCTTGAGAGATGGACCGATGAGGGTATCTATGATTTGGAACTCCTTGATTGGGAGTGAGTGAAGGTAAATTTGCTCAAGTGAGCGAATTTTGCCATCTTTCACAAGCCTTCCTAGCTTAGTGACCGGAACCCATTTCTCCTCCTCTGTTTCACGACGTGGACGACGGCCGCCACGGCCCCGTCCACCGCGGTCTCCACCTCTACCACCACGGCCTCCAAATCCACGACCGAACCCACCTCTCTCCCCTCCTCCTCTTTCCGCCATGATTGTAG</gDNA_template>
            <first_frame> S  S  K  N  M  R  S  N  S  Y  V  L  L  K  T  N  Q  N  K  E  H  Y  V  L  Q  V  C  G  K  Y  P  S  E  T  E  Q  N  L  E  Y  *  R  I  R  E  E  N  Y  *  N  K  T  T  E  G  L  I  S  H  L  K  *  I  K  P  Q  P  S  Q  V  L  P  L  Q  W  R  T  Q  *  P  Y  W  Q  V  L  P  R  Y  Q  S  T  L  G  M  E  I  W  *  T  E  S  L  S  R  S  L  G  S  G  T  R  K  S  S  L  N  N  Q  R :   K  C :   L  N  E  V  A  K  G  F  G  G  S  A  R  R  C  E  D  I  F  D  T  S  K  L  K  D  L  L  G  D  T  S  S  N  Y  T  S  T  T  R  S  R  H  H  P  H  S  N  R  P  T  F  P  C  N  L  A  R  H  S  V  W  L  T  N  L  V  T  P  V  T  S  P  H  W  N  H  *  *  F  S  Q  Y  N  S  S  T  N  S  S  S  D  F  L  R  A  L  N  T  Q  T  N  V  T  I  P  V  T  Y  N  N  K  R  L  K  P  G  S  L  P  G  T  G  L  L  L  N  R  H  D  F  H  H  L  I  L  E  R  W  T  D  E  G  I  Y  D  L  E  L  L  D  W  E  *  V  K  V  N  L  L  K  *  A  N  F  A  I  F  H  K  P  S  *  L  S  D  R  N  P  F  L  L  L  C  F  T  T  W  T  T  A  A  T  A  P  S  T  A  V  S  T  S  T  T  T  A  S  K  S  T  T  E  P  T  S  L  P  S  S  S  F  R  H  D  C   </first_frame>
            <second_frame>  Q  A  K  T  *  D  Q  I  H  M  Y  C  *  K  Q  T  K  T  R  N  I  M  F  C  K  S  A  E  N  I  P  Q  K  Q  N  K  I  *  N  T  N  V  S  E  K  R  T  T  R  T  K  R  Q  K  D  S  Y  H  I  *  N  E  S  S  L  N  P  L  R  C  C  L  F  S  G  V  H  N  N  L  I  G  R  F  C  Q  D  I  K  V  L  L  E  W  R  F  G  E  P  S  L  F  P  E  V  W  G  Q  E  P  V  S  L  H  *  T  I  K   : G  N   : A  L  T  K  L  P  R  V  L  V  D  P  R  E  D  V  K  T  S  S  I  P  A  N  *  R  T  F  L  G  T  R  A  A  T  I  P  A  P  R  G  A  G  T  I  L  T  V  T  D  P  H  F  P  V  T  L  Q  G  T  V  C  G  L  P  I  L  L  P  Q  *  P  L  L  T  G  I  T  D  S  L  A  N  I  I  P  P  R  I  A  V  A  T  S  F  E  H  L  T  P  K  P  T  *  P  F  P  S  P  T  T  T  N  A  L  N  L  V  L  C  P  A  R  V  C  F  *  T  G  M  I  F  I  T  S  S  L  R  D  G  P  M  R  V  S  M  I  W  N  S  L  I  G  S  E  *  R  *  I  C  S  S  E  R  I  L  P  S  F  T  S  L  P  S  L  V  T  G  T  H  F  S  S  S  V  S  R  R  G  R  R  P  P  R  P  R  P  P  R  S  P  P  L  P  P  R  P  P  N  P  R  P  N  P  P  L  S  P  P  P  L  S  A  M  I  V  </second_frame>
            <third_frame>   K  Q  K  H  E  I  K  F  I  C  I  V  E  N  K  P  K  Q  G  T  L  C  F  A  S  L  R  K  I  S  L  R  N  R  T  K  F  R  I  L  T  Y  Q  R  R  E  L  L  E  Q  N  D  R  R  T  H  I  T  S  K  M  N  Q  A  S  T  L  S  G  A  A  S  S  V  A  Y  T  I  T  L  L  A  G  F  A  K  I  S  K  Y  S  W  N  G  D  L  V  N  R  V  S  F  Q  K  S  G  V  R  N  P  *  V  F  I  K  Q  S  K  :  E  M  :  P  *  R  S  C  Q  G  F  W  W  I  R  E  K  M  *  R  H  L  R  Y  Q  Q  T  E  G  P  S  W  G  H  E  Q  Q  L  Y  Q  H  H  E  E  Q  A  P  S  S  Q  *  Q  T  H  I  S  L  *  P  C  K  A  Q  C  V  A  Y  Q  S  C  Y  P  S  N  L  S  S  L  E  S  L  I  V  *  P  I  *  F  L  H  E  *  Q  *  R  L  P  S  S  T  *  H  P  N  Q  R  D  H  S  R  H  L  Q  Q  Q  T  P  *  T  W  F  S  A  R  H  G  S  A  S  E  P  A  *  F  S  S  P  H  P  *  E  M  D  R  *  G  Y  L  *  F  G  T  P  *  L  G  V  S  E  G  K  F  A  Q  V  S  E  F  C  H  L  S  Q  A  F  L  A  *  *  P  E  P  I  S  P  P  L  F  H  D  V  D  D  G  R  H  G  P  V  H  R  G  L  H  L  Y  H  H  G  L  Q  I  H  D  R  T  H  L  S  P  L  L  L  F  P  P  *  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0072F06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25435" stop="25103"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQKHEIKFICIVENKPKQGTLCFASLRKISLRNRTKFRILTYQRRELLEQNDRRTHITSKMNQASTLSGAASSVAYTITLLAGFAKISKYSWNGDLVNRVSFQKSGVRNP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0072F06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25143" stop="25082"/>
                    <exon start="24821" stop="24816"/>
                    <exon start="24287" stop="24053"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TESLSRSLGSGTRKSSLNNQRKCLNEVAKGFGGSARRCEDIFDTSKLKDLLGDTSSNYTSTTRSRHHPHSNRPTFPCNLARHSVWLTNLVTPVTSPHWNH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0072F06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24049" stop="23825"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSQYNSSTNSSSDFLRALNTQTNVTIPVTYNNKRLKPGSLPGTGLLLNRHDFHHLILERWTDEGIYDLELLDWE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0072F06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23814" stop="23611"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICSSERILPSFTSLPSLVTGTHFSSSVSRRGRRPPRPRPPRSPPLPPRPPNPRPNPPLSPPPLSAMIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="32007" PGL_stop="44963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32007" e_stop="32156"/>
            <exon e_start="35418" e_stop="35496"/>
            <exon e_start="36077" e_stop="36175"/>
            <exon e_start="36264" e_stop="36377"/>
            <exon e_start="41174" e_stop="41319"/>
            <exon e_start="41968" e_stop="42049"/>
            <exon e_start="42691" e_stop="42776"/>
            <exon e_start="42850" e_stop="43041"/>
            <exon e_start="44067" e_stop="44963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.868" e_score="0.959"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.962"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="32007" e_stop="32156" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.868">
            <gDNA_intron_boundary i_start="32157" i_stop="35417" i_length="3261"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="35418" e_stop="35496" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35497" i_stop="36076" i_length="580"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36077" e_stop="36175" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="36176" i_stop="36263" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36264" e_stop="36377" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36378" i_stop="41173" i_length="4796"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41174" e_stop="41319" e_length="146"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="41320" i_stop="41967" i_length="648"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41968" e_stop="42049" e_length="82"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.967">
            <gDNA_intron_boundary i_start="42050" i_stop="42690" i_length="641"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42691" e_stop="42776" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.911" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42777" i_stop="42849" i_length="73"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="42850" e_stop="43041" e_length="192"/>
          </exon>
          <intron i_serial="8" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43042" i_stop="44066" i_length="1025"/>
          </intron>
          <exon e_serial="9" e_score="0.954">
            <gDNA_exon_boundary e_start="44067" e_stop="44963" e_length="897"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32007" stop="32156"/>
              <exon start="35418" stop="35496"/>
              <exon start="36077" stop="36165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32010" stop="32156"/>
              <exon start="35418" stop="35496"/>
              <exon start="36077" stop="36175"/>
              <exon start="36264" stop="36377"/>
              <exon start="41174" stop="41319"/>
              <exon start="41968" stop="42036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36098" stop="36175"/>
              <exon start="36264" stop="36377"/>
              <exon start="41174" stop="41319"/>
              <exon start="41968" stop="42049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36166" stop="36175"/>
              <exon start="36264" stop="36377"/>
              <exon start="41174" stop="41319"/>
              <exon start="41968" stop="42049"/>
              <exon start="42691" stop="42776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36354" stop="36377"/>
              <exon start="41174" stop="41319"/>
              <exon start="41968" stop="42049"/>
              <exon start="42691" stop="42776"/>
              <exon start="42850" stop="43041"/>
              <exon start="44067" stop="44208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36354" stop="36377"/>
              <exon start="41174" stop="41319"/>
              <exon start="41968" stop="42049"/>
              <exon start="42691" stop="42776"/>
              <exon start="42850" stop="42907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36354" stop="36377"/>
              <exon start="41174" stop="41319"/>
              <exon start="41968" stop="42049"/>
              <exon start="42691" stop="42776"/>
              <exon start="42850" stop="42854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41257" stop="41319"/>
              <exon start="41968" stop="42049"/>
              <exon start="42691" stop="42776"/>
              <exon start="42850" stop="43041"/>
              <exon start="44067" stop="44503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41998" stop="42049"/>
              <exon start="42691" stop="42776"/>
              <exon start="42850" stop="43041"/>
              <exon start="44067" stop="44637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42010" stop="42049"/>
              <exon start="42691" stop="42776"/>
              <exon start="42850" stop="43041"/>
              <exon start="44067" stop="44491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44140" stop="44793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44543" stop="44963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218385" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGGAGAACAATTTGAAGAAACAGTGGAAACTAGAAGAGATGGCTAACAATGCGGCGGCTTGTGCAGAAAGGGCAACTAGTGATATGCTGATTGGGCCAGACTGGGCTATAAACATTGAGCTTTGTGATATCATCAACATGAATCCTGG : ACAAGCAAAGGATGCTCTTAAGATTATCAAGAAACGCTTGGGGAGTAAAAATCCAAAAATACAGCTCCTTACACTATTC : GTTCTTGAGACTCTGAGCAAAAATTGTGGAGAGAATGTATTTCAGCAAATTGTGGAGCGTGAGATTTTACGAGACATGGTCAAAATTGTGAAGAAGAAG : CCTGATTTAAATGTGAGGGAGAAGATTTTGATTTTGATAGATTCATGGCAAGAAGCTTTGGGAGGGCCAGGGGGACGATTTCCCCAGTATTACGCTGCATATAATGAGCTGAAG : GCTGCAGGTGTAGAGTTTCCACCTCGAGAGGAAAACAGTGTACCTTTATTTACACCACCACAAACCCATCCAATAGTCCACACGCCTTCCGCTTATGAGGAGGCTGCAGTTGAGGCCTCTCTTGAGTCTGATCCCTCTGGACTCAG : TGTCGCGGAGATTCAAAGTGCCGAGGGGCTATCAGATGTCCTCACGGAGATGCTTGGTGCCTTGGATCCAAAGAACCCTCAG : TCCGTGAAGGAGGAGGTGATAGTCGATCTTGTTGAACAGTGTCGGTCTTACCAAAAGCGTGTGATGATTCTTGTGAACAACACAGT : AGACGAGGATCTGCTGTGTAAAGGATTGGCACTCAATGACAATCTGCAGCGAGTTCTTCGTAGACATGACGATATTGCCAAAGGAACCTCAACAATTACTGTACCACCCAGAGAAACTCCTGTTGCACCCCTTATGAATGTGAATCATGAGGATGATGAGTCAGAAGATGATTTCTCTCACTTATCACGGAG : AACTTCAAGAGATCCATCACAGGGACAGGGGCGGAAGACTATTGATGTGAAGAGTGAGCCAATGCGAATTACTCCAACTCTTCCTCCTCCACCTTCATCAAGGAGACCAGTTTTTACGGATGGGAAAATGGTTGATTATCTCAGCGGTGACAGGTTTGAATCTGAAAGATCAATGGGAACAGAAGGATCATCACCTATTGCTGCTTCAACTAATTCAAACAATGCGAGTTCCATCCCATGGTCAAGTCCCAAGCCATCTTCATCTGCACCCCCTCCAGATGATTTGCTAAATCCAACTGCTGATGAGAACTTCTTGAACCCCACTGCATCTATGTTTACTGGAAAAAACAACCAGAATGAATCCAATTCAAAAGCCAAATCTGCTGATAACTTGCCTCCAGCACCTTGGGATGCTCCTCCTCCTACCGCAATCCCTCCACCACCAGCCAGATATGATCAGAGACAGCAGTACTTTGAGAAACATGTTTCTGGTGGCTCCCCTCCCGCAAGAACTGGATCGAGTTCCTATGACAGCATAGTTGGACAAACAAAGAATCTCTCTATTAATTCTTCTTCACCATCCAAACCAGAGAAACCTGAGGACGCACTCTTCAAAGATCTTGTTGATTTTGCAAAAGCCAAGTCTTCCTCATCTTCAAACCAATCCAATAGATCATTTTGAGTGATTTCAATGAATATGAATAATGTGTGGTGGGGTGTATATCTACTTTTTCTTCTTGTAGCAATAAATATTAGAGAGGACTGAGTTTTATGGATTACTGGTGCTGCTTCTTCTGCTTTATTTTCTGTTCGGCTTTCAGCCTTTAGGTGAGTGATAGTGTAGCTGACATGACATTTATATCTTGGATCATATAAGATGGTTAATATTTCTGTTTT</gDNA_template>
            <first_frame> Q  G  E  Q  F  E  E  T  V  E  T  R  R  D  G  *  Q  C  G  G  L  C  R  K  G  N  *  *  Y  A  D  W  A  R  L  G  Y  K  H  *  A  L  *  Y  H  Q  H  E  S  W  :  T  S  K  G  C  S  *  D  Y  Q  E  T  L  G  E  *  K  S  K  N  T  A  P  Y  T  I   : R  S  *  D  S  E  Q  K  L  W  R  E  C  I  S  A  N  C  G  A  *  D  F  T  R  H  G  Q  N  C  E  E  E   : A  *  F  K  C  E  G  E  D  F  D  F  D  R  F  M  A  R  S  F  G  R  A  R  G  T  I  S  P  V  L  R  C  I  *  *  A  E   : G  C  R  C  R  V  S  T  S  R  G  K  Q  C  T  F  I  Y  T  T  T  N  P  S  N  S  P  H  A  F  R  L  *  G  G  C  S  *  G  L  S  *  V  *  S  L  W  T  Q  :  C  R  G  D  S  K  C  R  G  A  I  R  C  P  H  G  D  A  W  C  L  G  S  K  E  P  S   : V  R  E  G  G  G  D  S  R  S  C  *  T  V  S  V  L  P  K  A  C  D  D  S  C  E  Q  H  S  :  R  R  G  S  A  V  *  R  I  G  T  Q  *  Q  S  A  A  S  S  S  *  T  *  R  Y  C  Q  R  N  L  N  N  Y  C  T  T  Q  R  N  S  C  C  T  P  Y  E  C  E  S  *  G  *  *  V  R  R  *  F  L  S  L  I  T  E  :  N  F  K  R  S  I  T  G  T  G  A  E  D  Y  *  C  E  E  *  A  N  A  N  Y  S  N  S  S  S  S  T  F  I  K  E  T  S  F  Y  G  W  E  N  G  *  L  S  Q  R  *  Q  V  *  I  *  K  I  N  G  N  R  R  I  I  T  Y  C  C  F  N  *  F  K  Q  C  E  F  H  P  M  V  K  S  Q  A  I  F  I  C  T  P  S  R  *  F  A  K  S  N  C  *  *  E  L  L  E  P  H  C  I  Y  V  Y  W  K  K  Q  P  E  *  I  Q  F  K  S  Q  I  C  *  *  L  A  S  S  T  L  G  C  S  S  S  Y  R  N  P  S  T  T  S  Q  I  *  S  E  T  A  V  L  *  E  T  C  F  W  W  L  P  S  R  K  N  W  I  E  F  L  *  Q  H  S  W  T  N  K  E  S  L  Y  *  F  F  F  T  I  Q  T  R  E  T  *  G  R  T  L  Q  R  S  C  *  F  C  K  S  Q  V  F  L  I  F  K  P  I  Q  *  I  I  L  S  D  F  N  E  Y  E  *  C  V  V  G  C  I  S  T  F  S  S  C  S  N  K  Y  *  R  G  L  S  F  M  D  Y  W  C  C  F  F  C  F  I  F  C  S  A  F  S  L  *  V  S  D  S  V  A  D  M  T  F  I  S  W  I  I  *  D  G  *  Y  F  C  F </first_frame>
            <second_frame>  R  E  N  N  L  K  K  Q  W  K  L  E  E  M  A  N  N  A  A  A  C  A  E  R  A  T  S  D  M  L  I  G  P  D  W  A  I  N  I  E  L  C  D  I  I  N  M  N  P  G :   Q  A  K  D  A  L  K  I  I  K  K  R  L  G  S  K  N  P  K  I  Q  L  L  T  L  F  :  V  L  E  T  L  S  K  N  C  G  E  N  V  F  Q  Q  I  V  E  R  E  I  L  R  D  M  V  K  I  V  K  K  K  :  P  D  L  N  V  R  E  K  I  L  I  L  I  D  S  W  Q  E  A  L  G  G  P  G  G  R  F  P  Q  Y  Y  A  A  Y  N  E  L  K  :  A  A  G  V  E  F  P  P  R  E  E  N  S  V  P  L  F  T  P  P  Q  T  H  P  I  V  H  T  P  S  A  Y  E  E  A  A  V  E  A  S  L  E  S  D  P  S  G  L  S :   V  A  E  I  Q  S  A  E  G  L  S  D  V  L  T  E  M  L  G  A  L  D  P  K  N  P  Q  :  S  V  K  E  E  V  I  V  D  L  V  E  Q  C  R  S  Y  Q  K  R  V  M  I  L  V  N  N  T  V :   D  E  D  L  L  C  K  G  L  A  L  N  D  N  L  Q  R  V  L  R  R  H  D  D  I  A  K  G  T  S  T  I  T  V  P  P  R  E  T  P  V  A  P  L  M  N  V  N  H  E  D  D  E  S  E  D  D  F  S  H  L  S  R  R :   T  S  R  D  P  S  Q  G  Q  G  R  K  T  I  D  V  K  S  E  P  M  R  I  T  P  T  L  P  P  P  P  S  S  R  R  P  V  F  T  D  G  K  M  V  D  Y  L  S  G  D  R  F  E  S  E  R  S  M  G  T  E  G  S  S  P  I  A  A  S  T  N  S  N  N  A  S  S  I  P  W  S  S  P  K  P  S  S  S  A  P  P  P  D  D  L  L  N  P  T  A  D  E  N  F  L  N  P  T  A  S  M  F  T  G  K  N  N  Q  N  E  S  N  S  K  A  K  S  A  D  N  L  P  P  A  P  W  D  A  P  P  P  T  A  I  P  P  P  P  A  R  Y  D  Q  R  Q  Q  Y  F  E  K  H  V  S  G  G  S  P  P  A  R  T  G  S  S  S  Y  D  S  I  V  G  Q  T  K  N  L  S  I  N  S  S  S  P  S  K  P  E  K  P  E  D  A  L  F  K  D  L  V  D  F  A  K  A  K  S  S  S  S  S  N  Q  S  N  R  S  F  *  V  I  S  M  N  M  N  N  V  W  W  G  V  Y  L  L  F  L  L  V  A  I  N  I  R  E  D  *  V  L  W  I  T  G  A  A  S  S  A  L  F  S  V  R  L  S  A  F  R  *  V  I  V  *  L  T  *  H  L  Y  L  G  S  Y  K  M  V  N  I  S  V   </second_frame>
            <third_frame>   G  R  T  I  *  R  N  S  G  N  *  K  R  W  L  T  M  R  R  L  V  Q  K  G  Q  L  V  I  C  *  L  G  Q  T  G  L  *  T  L  S  F  V  I  S  S  T  *  I  L   : D  K  Q  R  M  L  L  R  L  S  R  N  A  W  G  V  K  I  Q  K  Y  S  S  L  H  Y  S :   F  L  R  L  *  A  K  I  V  E  R  M  Y  F  S  K  L  W  S  V  R  F  Y  E  T  W  S  K  L  *  R  R  S :   L  I  *  M  *  G  R  R  F  *  F  *  *  I  H  G  K  K  L  W  E  G  Q  G  D  D  F  P  S  I  T  L  H  I  M  S  *  R :   L  Q  V  *  S  F  H  L  E  R  K  T  V  Y  L  Y  L  H  H  H  K  P  I  Q  *  S  T  R  L  P  L  M  R  R  L  Q  L  R  P  L  L  S  L  I  P  L  D  S   : V  S  R  R  F  K  V  P  R  G  Y  Q  M  S  S  R  R  C  L  V  P  W  I  Q  R  T  L  S :   P  *  R  R  R  *  *  S  I  L  L  N  S  V  G  L  T  K  S  V  *  *  F  L  *  T  T  Q   : *  T  R  I  C  C  V  K  D  W  H  S  M  T  I  C  S  E  F  F  V  D  M  T  I  L  P  K  E  P  Q  Q  L  L  Y  H  P  E  K  L  L  L  H  P  L  *  M  *  I  M  R  M  M  S  Q  K  M  I  S  L  T  Y  H  G   : E  L  Q  E  I  H  H  R  D  R  G  G  R  L  L  M  *  R  V  S  Q  C  E  L  L  Q  L  F  L  L  H  L  H  Q  G  D  Q  F  L  R  M  G  K  W  L  I  I  S  A  V  T  G  L  N  L  K  D  Q  W  E  Q  K  D  H  H  L  L  L  L  Q  L  I  Q  T  M  R  V  P  S  H  G  Q  V  P  S  H  L  H  L  H  P  L  Q  M  I  C  *  I  Q  L  L  M  R  T  S  *  T  P  L  H  L  C  L  L  E  K  T  T  R  M  N  P  I  Q  K  P  N  L  L  I  T  C  L  Q  H  L  G  M  L  L  L  L  P  Q  S  L  H  H  Q  P  D  M  I  R  D  S  S  T  L  R  N  M  F  L  V  A  P  L  P  Q  E  L  D  R  V  P  M  T  A  *  L  D  K  Q  R  I  S  L  L  I  L  L  H  H  P  N  Q  R  N  L  R  T  H  S  S  K  I  L  L  I  L  Q  K  P  S  L  P  H  L  Q  T  N  P  I  D  H  F  E  *  F  Q  *  I  *  I  M  C  G  G  V  Y  I  Y  F  F  F  L  *  Q  *  I  L  E  R  T  E  F  Y  G  L  L  V  L  L  L  L  L  Y  F  L  F  G  F  Q  P  L  G  E  *  *  C  S  *  H  D  I  Y  I  L  D  H  I  R  W  L  I  F  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0072F06.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32008" stop="32156"/>
                    <exon start="35418" stop="35496"/>
                    <exon start="36077" stop="36175"/>
                    <exon start="36264" stop="36377"/>
                    <exon start="41174" stop="41319"/>
                    <exon start="41968" stop="42049"/>
                    <exon start="42691" stop="42776"/>
                    <exon start="42850" stop="43041"/>
                    <exon start="44067" stop="44748"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1626</number_coding_nucleotides>
                  <number_encoded_amino_acids>542</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RENNLKKQWKLEEMANNAAACAERATSDMLIGPDWAINIELCDIINMNPGQAKDALKIIKKRLGSKNPKIQLLTLFVLETLSKNCGENVFQQIVEREILRDMVKIVKKKPDLNVREKILILIDSWQEALGGPGGRFPQYYAAYNELKAAGVEFPPREENSVPLFTPPQTHPIVHTPSAYEEAAVEASLESDPSGLSVAEIQSAEGLSDVLTEMLGALDPKNPQSVKEEVIVDLVEQCRSYQKRVMILVNNTVDEDLLCKGLALNDNLQRVLRRHDDIAKGTSTITVPPRETPVAPLMNVNHEDDESEDDFSHLSRRTSRDPSQGQGRKTIDVKSEPMRITPTLPPPPSSRRPVFTDGKMVDYLSGDRFESERSMGTEGSSPIAASTNSNNASSIPWSSPKPSSSAPPPDDLLNPTADENFLNPTASMFTGKNNQNESNSKAKSADNLPPAPWDAPPPTAIPPPPARYDQRQQYFEKHVSGGSPPARTGSSSYDSIVGQTKNLSINSSSPSKPEKPEDALFKDLVDFAKAKSSSSSNQSNRSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="45005" PGL_stop="44176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45005" e_stop="44176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="45005" e_stop="44176" e_length="830"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45005" stop="44339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44990" stop="44176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576116" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGCACACACTATGTTGGATTAGCAGTTGAAACAAAACAAAAAAACAGAAATATTAACCATCTTATATGATCCAAGATATAAATGTCATGTCAGCTACACTATCACTCACCTAAAGGCTGAAAGCCGAACAGAAAATAAAGCAGAAGAAGCAGCACCAGTAATCCATAAAACTCAGTCCTCTCTAATATTTATTGCTACAAGAAGAAAAAGTAGATATACACCCCACCACACATTATTCATATTCATTGAAATCACTCAAAATGATCTATTGGATTGGTTTGAAGATGAGGAAGACTTGGCTTTTGCAAAATCAACAAGATCTTTGAAGAGTGCGTCCTCAGGTTTCTCTGGTTTGGATGGTGAAGAAGAATTAATAGAGAGATTCTTTGTTTGTCCAACTATGCTGTCATAGGAACTCGATCCAGTTCTTGCGGGAGGGGAGCCACCAGAAACATGTTTCTCAAAGTACTGCTGTCTCTGATCATATCTGGCTGGTGGTGGAGGGATTGCGGTAGGAGGAGGAGCATCCCAAGGTGCTGGAGGCAAGTTATCAGCAGATTTGGCTTTTGAATTGGATTCATTCTGGTTGTTTTTTCCAGTAAACATAGATGCAGTGGGGTTCAAGAAGTTCTCATCAGCAGTTGGATTTAGCAAATCATCTGGAGGGGGTGCAGATGAAGATGGCTTGGGACTTGACCATGGGATGGAACTCGCATTGTTTGAATTAGTTGAAGCAGCAATAGGTGATGATCCTTCTGTTCCCATTGATCTTTCAGATTCAAACCTGTCACCGCTGAGATAATCAACCATTTTCCCATCCGTAAAAAC</gDNA_template>
            <first_frame> M  A  H  T  M  L  D  *  Q  L  K  Q  N  K  K  T  E  I  L  T  I  L  Y  D  P  R  Y  K  C  H  V  S  Y  T  I  T  H  L  K  A  E  S  R  T  E  N  K  A  E  E  A  A  P  V  I  H  K  T  Q  S  S  L  I  F  I  A  T  R  R  K  S  R  Y  T  P  H  H  T  L  F  I  F  I  E  I  T  Q  N  D  L  L  D  W  F  E  D  E  E  D  L  A  F  A  K  S  T  R  S  L  K  S  A  S  S  G  F  S  G  L  D  G  E  E  E  L  I  E  R  F  F  V  C  P  T  M  L  S  *  E  L  D  P  V  L  A  G  G  E  P  P  E  T  C  F  S  K  Y  C  C  L  *  S  Y  L  A  G  G  G  G  I  A  V  G  G  G  A  S  Q  G  A  G  G  K  L  S  A  D  L  A  F  E  L  D  S  F  W  L  F  F  P  V  N  I  D  A  V  G  F  K  K  F  S  S  A  V  G  F  S  K  S  S  G  G  G  A  D  E  D  G  L  G  L  D  H  G  M  E  L  A  L  F  E  L  V  E  A  A  I  G  D  D  P  S  V  P  I  D  L  S  D  S  N  L  S  P  L  R  *  S  T  I  F  P  S  V  K   </first_frame>
            <second_frame>  W  H  T  L  C  W  I  S  S  *  N  K  T  K  K  Q  K  Y  *  P  S  Y  M  I  Q  D  I  N  V  M  S  A  T  L  S  L  T  *  R  L  K  A  E  Q  K  I  K  Q  K  K  Q  H  Q  *  S  I  K  L  S  P  L  *  Y  L  L  L  Q  E  E  K  V  D  I  H  P  T  T  H  Y  S  Y  S  L  K  S  L  K  M  I  Y  W  I  G  L  K  M  R  K  T  W  L  L  Q  N  Q  Q  D  L  *  R  V  R  P  Q  V  S  L  V  W  M  V  K  K  N  *  *  R  D  S  L  F  V  Q  L  C  C  H  R  N  S  I  Q  F  L  R  E  G  S  H  Q  K  H  V  S  Q  S  T  A  V  S  D  H  I  W  L  V  V  E  G  L  R  *  E  E  E  H  P  K  V  L  E  A  S  Y  Q  Q  I  W  L  L  N  W  I  H  S  G  C  F  F  Q  *  T  *  M  Q  W  G  S  R  S  S  H  Q  Q  L  D  L  A  N  H  L  E  G  V  Q  M  K  M  A  W  D  L  T  M  G  W  N  S  H  C  L  N  *  L  K  Q  Q  *  V  M  I  L  L  F  P  L  I  F  Q  I  Q  T  C  H  R  *  D  N  Q  P  F  S  H  P  *  K  </second_frame>
            <third_frame>   G  T  H  Y  V  G  L  A  V  E  T  K  Q  K  N  R  N  I  N  H  L  I  *  S  K  I  *  M  S  C  Q  L  H  Y  H  S  P  K  G  *  K  P  N  R  K  *  S  R  R  S  S  T  S  N  P  *  N  S  V  L  S  N  I  Y  C  Y  K  K  K  K  *  I  Y  T  P  P  H  I  I  H  I  H  *  N  H  S  K  *  S  I  G  L  V  *  R  *  G  R  L  G  F  C  K  I  N  K  I  F  E  E  C  V  L  R  F  L  W  F  G  W  *  R  R  I  N  R  E  I  L  C  L  S  N  Y  A  V  I  G  T  R  S  S  S  C  G  R  G  A  T  R  N  M  F  L  K  V  L  L  S  L  I  I  S  G  W  W  W  R  D  C  G  R  R  R  S  I  P  R  C  W  R  Q  V  I  S  R  F  G  F  *  I  G  F  I  L  V  V  F  S  S  K  H  R  C  S  G  V  Q  E  V  L  I  S  S  W  I  *  Q  I  I  W  R  G  C  R  *  R  W  L  G  T  *  P  W  D  G  T  R  I  V  *  I  S  *  S  S  N  R  *  *  S  F  C  S  H  *  S  F  R  F  K  P  V  T  A  E  I  I  N  H  F  P  I  R  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0072F06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44981" stop="44592"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLKQNKKTEILTILYDPRYKCHVSYTITHLKAESRTENKAEEAAPVIHKTQSSLIFIATRRKSRYTPHHTLFIFIEITQNDLLDWFEDEEDLAFAKSTRSLKSASSGFSGLDGEEELIERFFVCPTMLS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0072F06.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44522" stop="44202"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYLAGGGGIAVGGGASQGAGGKLSADLAFELDSFWLFFPVNIDAVGFKKFSSAVGFSKSSGGGADEDGLGLDHGMELALFELVEAAIGDDPSVPIDLSDSNLSPLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="55398" PGL_stop="54816"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55398" e_stop="54816"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="55398" e_stop="54816" e_length="583"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55398" stop="54816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301973" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTGTGCATTTTTCCTTTTTTTTCTGAGCTTCCAAAAATGGAGTATCAACATTATCCCTTAATTATCTTTATCTCACTTGTTCTCTTCCTCTCCTCTTTGTTTTTTCTGTCTCAAAAATGGAAATCTGCAAACAAAAAGTTGCCCCCTGGACCATGGAGACTACCTTTTATAGGAAACATGCATCAACTAATGAGCGATTTACCACATCGTTCACTTAGAACTCTATCGAAAAAATATGGCCCAATCATGCACTTACGTCTTGGGAATATTTCAACCATTGTTGTATCGTCACCAGAAATGGCAAAAGAAGTCATGAAAACTCAAGACCTCCATTTTGTAGATCGGCCACAAATTATGTCCGCGAGTATCATATTTTATGATTGCACGGACATAGGCTTTAGTTCCTATGGAGATTACTGGAGAAATATGCGAAAGGTTTCTTAGTACAAAAATGGTCAAATCATCTGCTTCAATTCGACAAGAGGAGATATCAAATCTCATTTCCTCTCTCCGTTCCACTGCACCTGACTCGTTGATCAACTTATCCAACTAGATCTTTTGGTTTACAAATACCGTAACTTG</gDNA_template>
            <first_frame> S  V  H  F  S  F  F  F  *  A  S  K  N  G  V  S  T  L  S  L  N  Y  L  Y  L  T  C  S  L  P  L  L  F  V  F  S  V  S  K  M  E  I  C  K  Q  K  V  A  P  W  T  M  E  T  T  F  Y  R  K  H  A  S  T  N  E  R  F  T  T  S  F  T  *  N  S  I  E  K  I  W  P  N  H  A  L  T  S  W  E  Y  F  N  H  C  C  I  V  T  R  N  G  K  R  S  H  E  N  S  R  P  P  F  C  R  S  A  T  N  Y  V  R  E  Y  H  I  L  *  L  H  G  H  R  L  *  F  L  W  R  L  L  E  K  Y  A  K  G  F  L  V  Q  K  W  S  N  H  L  L  Q  F  D  K  R  R  Y  Q  I  S  F  P  L  S  V  P  L  H  L  T  R  *  S  T  Y  P  T  R  S  F  G  L  Q  I  P  *  L  </first_frame>
            <second_frame>  V  C  I  F  P  F  F  S  E  L  P  K  M  E  Y  Q  H  Y  P  L  I  I  F  I  S  L  V  L  F  L  S  S  L  F  F  L  S  Q  K  W  K  S  A  N  K  K  L  P  P  G  P  W  R  L  P  F  I  G  N  M  H  Q  L  M  S  D  L  P  H  R  S  L  R  T  L  S  K  K  Y  G  P  I  M  H  L  R  L  G  N  I  S  T  I  V  V  S  S  P  E  M  A  K  E  V  M  K  T  Q  D  L  H  F  V  D  R  P  Q  I  M  S  A  S  I  I  F  Y  D  C  T  D  I  G  F  S  S  Y  G  D  Y  W  R  N  M  R  K  V  S  *  Y  K  N  G  Q  I  I  C  F  N  S  T  R  G  D  I  K  S  H  F  L  S  P  F  H  C  T  *  L  V  D  Q  L  I  Q  L  D  L  L  V  Y  K  Y  R  N  L </second_frame>
            <third_frame>   C  A  F  F  L  F  F  L  S  F  Q  K  W  S  I  N  I  I  P  *  L  S  L  S  H  L  F  S  S  S  P  L  C  F  F  C  L  K  N  G  N  L  Q  T  K  S  C  P  L  D  H  G  D  Y  L  L  *  E  T  C  I  N  *  *  A  I  Y  H  I  V  H  L  E  L  Y  R  K  N  M  A  Q  S  C  T  Y  V  L  G  I  F  Q  P  L  L  Y  R  H  Q  K  W  Q  K  K  S  *  K  L  K  T  S  I  L  *  I  G  H  K  L  C  P  R  V  S  Y  F  M  I  A  R  T  *  A  L  V  P  M  E  I  T  G  E  I  C  E  R  F  L  S  T  K  M  V  K  S  S  A  S  I  R  Q  E  E  I  S  N  L  I  S  S  L  R  S  T  A  P  D  S  L  I  N  L  S  N  *  I  F  W  F  T  N  T  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0072F06.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55397" stop="54954"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCIFPFFSELPKMEYQHYPLIIFISLVLFLSSLFFLSQKWKSANKKLPPGPWRLPFIGNMHQLMSDLPHRSLRTLSKKYGPIMHLRLGNISTIVVSSPEMAKEVMKTQDLHFVDRPQIMSASIIFYDCTDIGFSSYGDYWRNMRKVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="60945" PGL_stop="61321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60945" e_stop="61321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="60945" e_stop="61321" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60945" stop="61321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278291" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTATTTTATTTAATATATTATATATAGTCATAATAAAGAAAATTTACAAGGTACTGAAAATTTATAAAAGAACAAATAAAGAAATTTAAACTTAGTGAAAGTTAGGCGAGTTAAATTATGACCCGCAATTTTAATCAATCACAGCTCAATCCATTTCAACTCGCTCATTTGCCACTTACAATGTTTTGTATTACTTCATCAATTTGTTGTGAAAGAGGAATCTGGGCATCAAGATGCAACTTTGTTCCTAATCCCTTGAGCAATAATAGAATACTTCTTGAACTTTTGACCTCGCTTGCCTCATGAACAATAACTTCAAAACTATCCATTTCAATGTCATTTGGTGGTGATTTCTTCAATTGAATTCCCCTCTA</gDNA_template>
            <first_frame> I  L  F  Y  L  I  Y  Y  I  *  S  *  *  R  K  F  T  R  Y  *  K  F  I  K  E  Q  I  K  K  F  K  L  S  E  S  *  A  S  *  I  M  T  R  N  F  N  Q  S  Q  L  N  P  F  Q  L  A  H  L  P  L  T  M  F  C  I  T  S  S  I  C  C  E  R  G  I  W  A  S  R  C  N  F  V  P  N  P  L  S  N  N  R  I  L  L  E  L  L  T  S  L  A  S  *  T  I  T  S  K  L  S  I  S  M  S  F  G  G  D  F  F  N  *  I  P  L   </first_frame>
            <second_frame>  F  Y  F  I  *  Y  I  I  Y  S  H  N  K  E  N  L  Q  G  T  E  N  L  *  K  N  K  *  R  N  L  N  L  V  K  V  R  R  V  K  L  *  P  A  I  L  I  N  H  S  S  I  H  F  N  S  L  I  C  H  L  Q  C  F  V  L  L  H  Q  F  V  V  K  E  E  S  G  H  Q  D  A  T  L  F  L  I  P  *  A  I  I  E  Y  F  L  N  F  *  P  R  L  P  H  E  Q  *  L  Q  N  Y  P  F  Q  C  H  L  V  V  I  S  S  I  E  F  P  S  </second_frame>
            <third_frame>   F  I  L  F  N  I  L  Y  I  V  I  I  K  K  I  Y  K  V  L  K  I  Y  K  R  T  N  K  E  I  *  T  *  *  K  L  G  E  L  N  Y  D  P  Q  F  *  S  I  T  A  Q  S  I  S  T  R  S  F  A  T  Y  N  V  L  Y  Y  F  I  N  L  L  *  K  R  N  L  G  I  K  M  Q  L  C  S  *  S  L  E  Q  *  *  N  T  S  *  T  F  D  L  A  C  L  M  N  N  N  F  K  T  I  H  F  N  V  I  W  W  *  F  L  Q  L  N  S  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0072F06.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="63352" PGL_stop="61818"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63352" e_stop="63215"/>
            <exon e_start="62775" e_stop="62629"/>
            <exon e_start="62239" e_stop="62106"/>
            <exon e_start="62034" e_stop="61818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="0.993"/>
          <exon-intron don_prob="0.964" acc_prob="0.994" e_score="0.993"/>
          <exon-intron don_prob="0.950" acc_prob="0.535" e_score="0.978"/>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="63352" e_stop="63215" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="63214" i_stop="62776" i_length="439"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="62775" e_stop="62629" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.994">
            <gDNA_intron_boundary i_start="62628" i_stop="62240" i_length="389"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="62239" e_stop="62106" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="0.535">
            <gDNA_intron_boundary i_start="62105" i_stop="62035" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="0.908">
            <gDNA_exon_boundary e_start="62034" e_stop="61818" e_length="217"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63352" stop="63215"/>
              <exon start="62775" stop="62629"/>
              <exon start="62239" stop="62106"/>
              <exon start="62034" stop="61818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623854" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGACGTGGTTGCTGAATGGACAGAAGTGAAAGGTAATTTGTTTCTTGATGTCCACTGTTATGTGAGTGGACCGAATCCCCTACAAGAGCTAGCTGCCGAGTTCAGATACCATATATTCTCCAAGGAATTGCCATTG : GTACTTGAGGCTGTGCTCTATGGGGATTCAGATTTCTTCAAGGAGCATGAAGAACTAATGAATGCTACTGTTAGAGTCTATTTTCATTCTAGCTCGAAGAAGTACAACCGTGTAGAATGTTGGGGTCCTCTAAAAGATGCAGCTAAG : GGAAGACAAGGGGATTATATCAATGGTTTGTTATCGACAAGCAAGGAAGATTTTCAACCTCTGAAATTCCAGGGAAGTGCAAAATCAATCTTCCAAGCTCTTTTCACCTTCCTTCTCTGAGCTAATACACTAAG : GATCTCTCTTGAAACACATATTAGAGTCATGGGATCCTACATTTCGATGACTTGTAAAGACGAGAATTGTTTGCAAGGTCATTAGATTCTTTTACATGTATGTATTGCATTCTTTCGAATGTGCTCTTGACTGACAATTCTTGTAAAAAACCATATACTATTTTCCCTTCCACATATCAATCAGCAATTGTTCCATAACTCACTGCTCCATACCATA</gDNA_template>
            <first_frame> D  D  V  V  A  E  W  T  E  V  K  G  N  L  F  L  D  V  H  C  Y  V  S  G  P  N  P  L  Q  E  L  A  A  E  F  R  Y  H  I  F  S  K  E  L  P  L  :  V  L  E  A  V  L  Y  G  D  S  D  F  F  K  E  H  E  E  L  M  N  A  T  V  R  V  Y  F  H  S  S  S  K  K  Y  N  R  V  E  C  W  G  P  L  K  D  A  A  K  :  G  R  Q  G  D  Y  I  N  G  L  L  S  T  S  K  E  D  F  Q  P  L  K  F  Q  G  S  A  K  S  I  F  Q  A  L  F  T  F  L  L  *  A  N  T  L  R :   I  S  L  E  T  H  I  R  V  M  G  S  Y  I  S  M  T  C  K  D  E  N  C  L  Q  G  H  *  I  L  L  H  V  C  I  A  F  F  R  M  C  S  *  L  T  I  L  V  K  N  H  I  L  F  S  L  P  H  I  N  Q  Q  L  F  H  N  S  L  L  H  T  I </first_frame>
            <second_frame>  M  T  W  L  L  N  G  Q  K  *  K  V  I  C  F  L  M  S  T  V  M  *  V  D  R  I  P  Y  K  S  *  L  P  S  S  D  T  I  Y  S  P  R  N  C  H  W :   Y  L  R  L  C  S  M  G  I  Q  I  S  S  R  S  M  K  N  *  *  M  L  L  L  E  S  I  F  I  L  A  R  R  S  T  T  V  *  N  V  G  V  L  *  K  M  Q  L  R :   E  D  K  G  I  I  S  M  V  C  Y  R  Q  A  R  K  I  F  N  L  *  N  S  R  E  V  Q  N  Q  S  S  K  L  F  S  P  S  F  S  E  L  I  H  *   : G  S  L  L  K  H  I  L  E  S  W  D  P  T  F  R  *  L  V  K  T  R  I  V  C  K  V  I  R  F  F  Y  M  Y  V  L  H  S  F  E  C  A  L  D  *  Q  F  L  *  K  T  I  Y  Y  F  P  F  H  I  S  I  S  N  C  S  I  T  H  C  S  I  P   </second_frame>
            <third_frame>   *  R  G  C  *  M  D  R  S  E  R  *  F  V  S  *  C  P  L  L  C  E  W  T  E  S  P  T  R  A  S  C  R  V  Q  I  P  Y  I  L  Q  G  I  A  I   : G  T  *  G  C  A  L  W  G  F  R  F  L  Q  G  A  *  R  T  N  E  C  Y  C  *  S  L  F  S  F  *  L  E  E  V  Q  P  C  R  M  L  G  S  S  K  R  C  S  *   : G  K  T  R  G  L  Y  Q  W  F  V  I  D  K  Q  G  R  F  S  T  S  E  I  P  G  K  C  K  I  N  L  P  S  S  F  H  L  P  S  L  S  *  Y  T  K  :  D  L  S  *  N  T  Y  *  S  H  G  I  L  H  F  D  D  L  *  R  R  E  L  F  A  R  S  L  D  S  F  T  C  M  Y  C  I  L  S  N  V  L  L  T  D  N  S  C  K  K  P  Y  T  I  F  P  S  T  Y  Q  S  A  I  V  P  *  L  T  A  P  Y  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0072F06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63352" stop="63215"/>
                    <exon start="62775" stop="62629"/>
                    <exon start="62239" stop="62120"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDVVAEWTEVKGNLFLDVHCYVSGPNPLQELAAEFRYHIFSKELPLVLEAVLYGDSDFFKEHEELMNATVRVYFHSSSKKYNRVECWGPLKDAAKGRQGDYINGLLSTSKEDFQPLKFQGSAKSIFQALFTFLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62730" e_stop="62629"/>
            <exon e_start="62239" e_stop="61938"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62730" e_stop="62629" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.994">
            <gDNA_intron_boundary i_start="62628" i_stop="62240" i_length="389"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="62239" e_stop="61938" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62730" stop="62629"/>
              <exon start="62239" stop="61938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATGAAGAACTAATGAATGCTACTGTTAGAGTCTATTTTCATTCTAGCTCGAAGAAGTACAACCGTGTAGAATGTTGGGGTCCTCTAAAAGATGCAGCTAAG : GGAAGACAAGGGGATTATATCAATGGTTTGTTATCGACAAGCAAGGAAGATTTTCAACCTCTGAAATTCCAGGGAAGTGCAAAATCAATCTTCCAAGCTCTTTTCACCTTCCTTCTCTGAGCTAATACACTAAGGTGAGAGACTGCAAAGAGTTTATAGATTTAGGTCGTTTCGTCCTAATAATTTTACTTTTTGCACTTGGAAGGATCTCTCTTGAAACACATATTAGAGTCATGGGATCCTACATTTCGATGACTTGTAAAGACGAGAATTGTTTGCAAGGTCATTAGATTCTTTTACAT</gDNA_template>
            <first_frame> H  E  E  L  M  N  A  T  V  R  V  Y  F  H  S  S  S  K  K  Y  N  R  V  E  C  W  G  P  L  K  D  A  A  K  :  G  R  Q  G  D  Y  I  N  G  L  L  S  T  S  K  E  D  F  Q  P  L  K  F  Q  G  S  A  K  S  I  F  Q  A  L  F  T  F  L  L  *  A  N  T  L  R  *  E  T  A  K  S  L  *  I  *  V  V  S  S  *  *  F  Y  F  L  H  L  E  G  S  L  L  K  H  I  L  E  S  W  D  P  T  F  R  *  L  V  K  T  R  I  V  C  K  V  I  R  F  F  Y   </first_frame>
            <second_frame>  M  K  N  *  *  M  L  L  L  E  S  I  F  I  L  A  R  R  S  T  T  V  *  N  V  G  V  L  *  K  M  Q  L  R :   E  D  K  G  I  I  S  M  V  C  Y  R  Q  A  R  K  I  F  N  L  *  N  S  R  E  V  Q  N  Q  S  S  K  L  F  S  P  S  F  S  E  L  I  H  *  G  E  R  L  Q  R  V  Y  R  F  R  S  F  R  P  N  N  F  T  F  C  T  W  K  D  L  S  *  N  T  Y  *  S  H  G  I  L  H  F  D  D  L  *  R  R  E  L  F  A  R  S  L  D  S  F  T  </second_frame>
            <third_frame>   *  R  T  N  E  C  Y  C  *  S  L  F  S  F  *  L  E  E  V  Q  P  C  R  M  L  G  S  S  K  R  C  S  *   : G  K  T  R  G  L  Y  Q  W  F  V  I  D  K  Q  G  R  F  S  T  S  E  I  P  G  K  C  K  I  N  L  P  S  S  F  H  L  P  S  L  S  *  Y  T  K  V  R  D  C  K  E  F  I  D  L  G  R  F  V  L  I  I  L  L  F  A  L  G  R  I  S  L  E  T  H  I  R  V  M  G  S  Y  I  S  M  T  C  K  D  E  N  C  L  Q  G  H  *  I  L  L  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0072F06.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62730" stop="62629"/>
                    <exon start="62239" stop="62120"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEELMNATVRVYFHSSSKKYNRVECWGPLKDAAKGRQGDYINGLLSTSKEDFQPLKFQGSAKSIFQALFTFLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 349 chains have been computed
$ 
$ memory statistics:
$ 681744 bytes spliced alignments in total
$ 278 spliced alignments have been stored
$ 2452 bytes was the average size of a spliced alignment
$ 18768 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 2346 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 361 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-20 11:31:25
-->
