<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:43:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321634" ref_strand="+" ref_description="SGN-U321634        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:28205827-28207940 REVERSE | Aliases: F22H5.14, F22H5_14(evalue: 2e-164, score=575) genbank/nr: gi|15222126|ref|NP_177650.1| expressed protein [Arabidopsis thaliana] gi|25372812|pir||E96781 unknown protein, 62105-63958 [imported] - Arabidopsis thaliana gi|10092281|gb|AAG12694.1| unknown protein; 62105-63958 [Arabidopsis thaliana](evalue: 2e-162, score=575)">
      <seq>acaaagtatagtcctctttggttggaaaggtttcagtttatatcagcagtgagattaggatcagatgcaactagtatcaatgtgttaccatttagagatgctgaaggactgagtaagtatgtcgccattggcgatgatcgcgggaaagtgtatgcattctctagaaatggagaagttttggttgaatttcagacgtcgatgagttcaccaataacagcctatgtgtcgtacttgtctgtttataagaatgagagtgtggttgttacggggcatgagaatggtgggattttgatgcatagaatttgggaggtagtagtacctgatggtgatgacaggacttctcttcgtatggaaactgtaggaaaatttgcttcaccggaaatcgaggaaggagggtcttcgattttaagtttagaggtgcatcatgttggaagaaataggtatatcttgtccacggattctggtgggaaactctgggtttttagggagaatggaactgtttatggggtgacaacaccaaagagcaggccacttgcgttcttgaaacaaaggctactatttctaactgagactggtgcagggtcactagacttgaggaccatgaagattagggaatctgaatgtgaaggtttaaacaattctattgctaagagttatgtatttgatgcaactgaacggtcgaaagcctatgggtttacatctgatggtgatttgattcatgtgctactcttaggtgataatatgaacttcaagtgcagggttagatccaaaaggaagttagagatggccgagcctctgtcttttcaagcgattaaaggatatttgcttgttgctaaccaggataaggtatcactgtataacgtgtcatcgctgcattacgtgcggtctggtggaccaagacaattgttctctgttggtcatgatgagattgtagcatcatttttgagctctcaatctttggaaccaaatgataaaagcagaaaggttattcctttagttgccagtgatcaagaaaagctcgttattcttggccttggaagtggttacttggggatatatcgctcaaaccttccagttttcaaaaatgagttcaacactatgctgtggacgagtcctgttttatttttcatcattttccttttaggtgcatattatttttttgccaagaaaaaggaagctcttacctcctggggacctgacgatcctttcccttctacgggtgttacaagtggcgctccaatgggatccagccagggtgacagatcttatcctgattcatcgaggaatgcagatctgatggatcttaggggtagtagcctcagaggtccatctggaaggtatgtctctccatctcgctattctggtggaacggcaggtgcctatagaacaaattctgctgatacaaattctaggtctgcctctgttgatcccaactttagaactacctcggagttaaaatttagggggacgaatctagaaacaccaggttttccaaaaaggagagatagcctgtttgtaaacagtcaaattgtggatgatggcaagtaacctgcagttcatgtatggtacatgtgtttcagcaccatactgtcatttggacacgtggggaagctgacaatctatagctgtaactttgcaacgggttactcgtattgagaggaaataaaaagaacattttgagctttcagttctgattgccttaaattgataatcaaggttaagcagatgtctgttaacaattttttctctcttttccatttatgctaaatatttattccaagtatgcgcgcaatccatctgtaaattcagttctagtggagattattcatatagtggttgaaagatatctgagtttgagatcaaggcggaaaagataagcagaacccccaccccaaatagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="20815" stop="18306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20515" g_stop="18607" g_length="1909"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1909" r_length="1909" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-U321634" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20515" e_stop="18607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGTATAGTCCTCTTTGGTTGGAAAGGTTTCAGTTTATATCAGCAGTGAGATTAGGATCAGATGCAACTAGTATCAATGTGTTACCATTTAGAGATGCTGAAGGACTGAGTAAGTATGTCGCCATTGGCGATGATCGCGGGAAAGTGTATGCATTCTCTAGAAATGGAGAAGTTTTGGTTGAATTTCAGACGTCGATGAGTTCACCAATAACAGCCTATGTGTCGTACTTGTCTGTTTATAAGAATGAGAGTGTGGTTGTTACGGGGCATGAGAATGGTGGGATTTTGATGCATAGAATTTGGGAGGTAGTAGTACCTGATGGTGATGACAGGACTTCTCTTCGTATGGAAACTGTAGGAAAATTTGCTTCACCGGAAATCGAGGAAGGAGGGTCTTCGATTTTAAGTTTAGAGGTGCATCATGTTGGAAGAAATAGGTATATCTTGTCCACGGATTCTGGTGGGAAACTCTGGGTTTTTAGGGAGAATGGAACTGTTTATGGGGTGACAACACCAAAGAGCAGGCCACTTGCGTTCTTGAAACAAAGGCTACTATTTCTAACTGAGACTGGTGCAGGGTCACTAGACTTGAGGACCATGAAGATTAGGGAATCTGAATGTGAAGGTTTAAACAATTCTATTGCTAAGAGTTATGTATTTGATGCAACTGAACGGTCGAAAGCCTATGGGTTTACATCTGATGGTGATTTGATTCATGTGCTACTCTTAGGTGATAATATGAACTTCAAGTGCAGGGTTAGATCCAAAAGGAAGTTAGAGATGGCCGAGCCTCTGTCTTTTCAAGCGATTAAAGGATATTTGCTTGTTGCTAACCAGGATAAGGTATCACTGTATAACGTGTCATCGCTGCATTACGTGCGGTCTGGTGGACCAAGACAATTGTTCTCTGTTGGTCATGATGAGATTGTAGCATCATTTTTGAGCTCTCAATCTTTGGAACCAAATGATAAAAGCAGAAAGGTTATTCCTTTAGTTGCCAGTGATCAAGAAAAGCTCGTTATTCTTGGCCTTGGAAGTGGTTACTTGGGGATATATCGCTCAAACCTTCCAGTTTTCAAAAATGAGTTCAACACTATGCTGTGGACGAGTCCTGTTTTATTTTTCATCATTTTCCTTTTAGGTGCATATTATTTTTTTGCCAAGAAAAAGGAAGCTCTTACCTCCTGGGGACCTGACGATCCTTTCCCTTCTACGGGTGTTACAAGTGGCGCTCCAATGGGATCCAGCCAGGGTGACAGATCTTATCCTGATTCATCGAGGAATGCAGATCTGATGGATCTTAGGGGTAGTAGCCTCAGAGGTCCATCTGGAAGGTATGTCTCTCCATCTCGCTATTCTGGTGGAACGGCAGGTGCCTATAGAACAAATTCTGCTGATACAAATTCTAGGTCTGCCTCTGTTGATCCCAACTTTAGAACTACCTCGGAGTTAAAATTTAGGGGGACGAATCTAGAAACACCAGGTTTTCCAAAAAGGAGAGATAGCCTGTTTGTAAACAGTCAAATTGTGGATGATGGCAAGTAACCTGCAGTTCATGTATGGTACATGTGTTTCAGCACCATACTGTCATTTGGACACGTGGGGAAGCTGACAATCTATAGCTGTAACTTTGCAACGGGTTACTCGTATTGAGAGGAAATAAAAAGAACATTTTGAGCTTTCAGTTCTGATTGCCTTAAATTGATAATCAAGGTTAAGCAGATGTCTGTTAACAATTTTTTCTCTCTTTTCCATTTATGCTAAATATTTATTCCAAGTATGCGCGCAATCCATCTGTAAATTCAGTTCTAGTGGAGATTATTCATATAGTGGTTGAAAGATATCTGAGTTTGAGATCAAGGCGGAAAAGATAAGCAGAACCCCCACCCCAAATAGAAAAAAGAAA</genome_strand>
        <mrna_strand>ACAAAGTATAGTCCTCTTTGGTTGGAAAGGTTTCAGTTTATATCAGCAGTGAGATTAGGATCAGATGCAACTAGTATCAATGTGTTACCATTTAGAGATGCTGAAGGACTGAGTAAGTATGTCGCCATTGGCGATGATCGCGGGAAAGTGTATGCATTCTCTAGAAATGGAGAAGTTTTGGTTGAATTTCAGACGTCGATGAGTTCACCAATAACAGCCTATGTGTCGTACTTGTCTGTTTATAAGAATGAGAGTGTGGTTGTTACGGGGCATGAGAATGGTGGGATTTTGATGCATAGAATTTGGGAGGTAGTAGTACCTGATGGTGATGACAGGACTTCTCTTCGTATGGAAACTGTAGGAAAATTTGCTTCACCGGAAATCGAGGAAGGAGGGTCTTCGATTTTAAGTTTAGAGGTGCATCATGTTGGAAGAAATAGGTATATCTTGTCCACGGATTCTGGTGGGAAACTCTGGGTTTTTAGGGAGAATGGAACTGTTTATGGGGTGACAACACCAAAGAGCAGGCCACTTGCGTTCTTGAAACAAAGGCTACTATTTCTAACTGAGACTGGTGCAGGGTCACTAGACTTGAGGACCATGAAGATTAGGGAATCTGAATGTGAAGGTTTAAACAATTCTATTGCTAAGAGTTATGTATTTGATGCAACTGAACGGTCGAAAGCCTATGGGTTTACATCTGATGGTGATTTGATTCATGTGCTACTCTTAGGTGATAATATGAACTTCAAGTGCAGGGTTAGATCCAAAAGGAAGTTAGAGATGGCCGAGCCTCTGTCTTTTCAAGCGATTAAAGGATATTTGCTTGTTGCTAACCAGGATAAGGTATCACTGTATAACGTGTCATCGCTGCATTACGTGCGGTCTGGTGGACCAAGACAATTGTTCTCTGTTGGTCATGATGAGATTGTAGCATCATTTTTGAGCTCTCAATCTTTGGAACCAAATGATAAAAGCAGAAAGGTTATTCCTTTAGTTGCCAGTGATCAAGAAAAGCTCGTTATTCTTGGCCTTGGAAGTGGTTACTTGGGGATATATCGCTCAAACCTTCCAGTTTTCAAAAATGAGTTCAACACTATGCTGTGGACGAGTCCTGTTTTATTTTTCATCATTTTCCTTTTAGGTGCATATTATTTTTTTGCCAAGAAAAAGGAAGCTCTTACCTCCTGGGGACCTGACGATCCTTTCCCTTCTACGGGTGTTACAAGTGGCGCTCCAATGGGATCCAGCCAGGGTGACAGATCTTATCCTGATTCATCGAGGAATGCAGATCTGATGGATCTTAGGGGTAGTAGCCTCAGAGGTCCATCTGGAAGGTATGTCTCTCCATCTCGCTATTCTGGTGGAACGGCAGGTGCCTATAGAACAAATTCTGCTGATACAAATTCTAGGTCTGCCTCTGTTGATCCCAACTTTAGAACTACCTCGGAGTTAAAATTTAGGGGGACGAATCTAGAAACACCAGGTTTTCCAAAAAGGAGAGATAGCCTGTTTGTAAACAGTCAAATTGTGGATGATGGCAAGTAACCTGCAGTTCATGTATGGTACATGTGTTTCAGCACCATACTGTCATTTGGACACGTGGGGAAGCTGACAATCTATAGCTGTAACTTTGCAACGGGTTACTCGTATTGAGAGGAAATAAAAAGAACATTTTGAGCTTTCAGTTCTGATTGCCTTAAATTGATAATCAAGGTTAAGCAGATGTCTGTTAACAATTTTTTCTCTCTTTTCCATTTATGCTAAATATTTATTCCAAGTATGCGCGCAATCCATCTGTAAATTCAGTTCTAGTGGAGATTATTCATATAGTGGTTGAAAGATATCTGAGTTTGAGATCAAGGCGGAAAAGATAAGCAGAACCCCCACCCCAAATAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316316" ref_strand="+" ref_description="SGN-U316316        Tomato 200607 #1 [27 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At5g42960.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:XP_470465.1) | chr1:17098420-17100446 REVERSE | Aliases: F27F5.25, F27F5_25(evalue: 9e-81, score=297) genbank/nr: F27F5.25(evalue: 7e-79, score=297)">
      <seq>aaagttactttattgtatttatgaaattttccccttacgtgtcttatccattcagttgaacaaattagagtgccggccccaagtgttagagccatccatcagcaatttcctaattcctaaacctcaaatctcctcctccttatcccgctcgctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctccatgaccgatgctactgttgtcaaaggtcccagcttaaacggattatctctggccgttgagaaacctggattgttcatcgtcgactacaacgtcccgaagaaggacattaggtttcaatttatgaactcaatcaaggttctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcatgtcatgggctcaggaagttgtaaattaaagtacacatatgtccacggaggaatcactactttcgagcccatctatgatacagcaaagaatgcgtgggacttcatggtatcacgtaaagtttatggggatgacgtgtttaaggctacttatcagacaacaagcaaaaatttggggctcgaatggtccaggagttctaagttaaatggatcatttaagatttgtgcatctctctgtttgcttgaggaacgcaaaatcccaaagttaagtgctgagacgtcgtgggactttgaaatgtgattctgtttcttctgcaataattcggatgtaactacttctggctacccttcataattgggtttcacctaatgttttctagctcaatttgttgattcacaagtgagctgttcgttttgctttgtaatcggtttatggttaccaacatgagtattgatccaaagttgttttttgtcaatcttccgatttcaagacacttccatgttttgatgccctgactttacctgaattaatgatttaaggctccatcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28509" stop="24158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28209" g_stop="27803" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26598" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="758" r_length="360" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26597" i_stop="24790" i_length="1808">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24789" g_stop="24454" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="1094" r_length="336" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1095" polyA_stop="1112"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-U316316" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>1103</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28209" e_stop="27803"/>
          <exon e_start="26957" e_stop="26598"/>
          <exon e_start="24789" e_stop="24454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTACTTTATTGTATTTATGAAATTTTCCCCTTACGGGGCATGTTTGTCTTATCCATTCAGTTGAACAAATTAGAATGCCGGCCCCAAGTGTTAGAGCCATCCATCAGCAATTTCCTAATTCCTAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAGGTATAACTTTCAGGCTTTCCATCCATATTTTTCGTTGGCAATTTCCATTGCAATTGAATTACAAAGCTACTATTCAATAGTTTGCACTGAAATTTCAATTGGCTTGCTTATGTTTTTTGGGGCTTATTTCTGTTAGCTCTGTTTTTTTCTTAAAGCATTTGTGAATTTGTTGGCTCACTAGCTTGTTGATCTCATATTCCAACAAAAGTACTCGTATGGTGACACTGCTTTTAGAAGTTACTTGTTACTTACCAGAAAGTCGTCTTCTGGTGAACATTCCAGAATGCGTTGGAGGTGTACATTCTACTTCACTTGTATTTGCACTGGTCATGTACCAAAATTCTTCCTAAACGCCTGTTGGCCGTGTCATTGCAGACCTTTTGTAAACCACGGATGGAATAACCTGTAACTATATGATCCTTTTTTTAAAACATTAAGTGGTCGGAATGTAAATACCTCGGGATTTATCGAAGGTTAATGATGAAGGGATCGTAGTGCACTTGTATAAAGTCTCTGCGAGGTTTATTGATTTTGCTTGTTTCTTATCATTTCTGCTCAGTTATTAAACACACGTGTTGATGTCATTTTGCATTGTTCATATTGTGAGTCTGCATTCTCTGTCTAGTCTGAGAAGGGCCTACCCTCCCTGATGTCACAAGTTGATCAATTTCTTGTCTGGATGAAGGCTGCATGTTGAAAAATCTAAAAAATGGAAGTTCATTTGGTGGTTTTAATAATATAAATGTTCACATGTCATATTGATTCATAGACTCATTTGCTCGACTTTTCTGATTTTGATGTGCATCAATAAGCGTCCACAAAAGGATCTTTCACCCTGATAAGTGCAAGCGACCATTAAAGGTTATTCTACATTGGTATTGGTTCCCTGATTGTCATTTGATAGGGTCATATGATAGATCATGAACTTGGATACATATCTGGATTTTTTGCAGTTATGCCATTGCTTTTGTGGGAATTCAGCTTAGATCCATTATGTTGCCATAAATGTGTGCCAGTTTCAAAATGGCCTTCAATTGTTAATAGTGAATAAGACTGTTTTCATTAATGTTCACCTTCAAGTGATCTATATGCCATCAGAATGTGCAAAGAAATGCACAAATTATAACATCTATTATAGCCATGATATTTTATCAGCATCACTATTGTTATACATTCTGTGTGAAAATCTTTATCGAATTATTTGATAGTTTAACCATAATGACTTGTTTTTAAGCTTCTCGTTTTTACCCGTGAACCTCCTAATTGAATGTTCCCTGGTTTCTGATGATGTTTAAAATGAACACGAGTCATTTCTGCTAGGTTGTATCCTTATTCTGTAAATCAAAAAATTCACTCACTTCTATTGGATAATTCAGCGTAAAAAACTGATCAGCTGTTGTAGAATGAACTTCATAAGTGGACAGTTTCTTATTTTCATCTTTAAATTTTGAATTTGTTTGTGTCGTTTTTTCTTGTTTCCTTGTATCCTTCATGTATTATTTTGTTTTGATCGAATAGTAATGAGATCAACCTTATGGTAGCTCACTTCATGCTTGTCATTTGATTTTCCTCTGTGAAATAGACAATGTGGTTCCGAGACGCCCACACAGTGGGAACTTCATGCACATGCATTGCTGTCCTTTTTCTGTTCTTCTTTTAAATATATAAACCAGTGCTTCTTGATCTTGTGTTTAAGGTTTGGTTTATTGATAGATATTGAACTATGTAAAGCATCTAAAGAAATTCTTCATTTTTTGTTTTGATTCCCTGAGACCATTTCTGACTTAAGATTCTCTTCCTGTCTCCAGATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGTTTTTTGTCAATCTTCCGATTTCAAGACACTTCCATGTTTTGATGCCCTGACTTTACCTGAATTAATGATTTAAGGCTCCATCAAAATGAT</genome_strand>
        <mrna_strand>AAAGTTACTTTATTGTATTTATGAAATTTTCCCCTTA-----C--G--TGTCTTATCCATTCAGTTGAACAAATTAGAGTGCCGGCCCCAAGTGTTAGAGCCATCCATCAGCAATTTCCTAATTCCTAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTATCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCATGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGTTTTTTGTCAATCTTCCGATTTCAAGACACTTCCATGTTTTGATGCCCTGACTTTACCTGAATTAATGATTTAAGGCTCCATCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335590" ref_strand="-" ref_description="SGN-U335590        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At5g42960.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:XP_470465.1) | chr1:17098420-17100446 REVERSE | Aliases: F27F5.25, F27F5_25(evalue: 1e-19, score=94.4) genbank/nr: LacOPZ-alpha(evalue: 6e-21, score=104)">
      <seq>cgtgggacttcatggtatcacgtaaagtttatggggatgatgtgtttaaggctacttatcagacaccaagcaagaatttggggctcgaatggtccaggagttctaagttaaatggatcatttaagatttgtgcatctctctgtttgcttgaggaacgcaaaatcccaaagttaagtgctgagacttcgtgggactttgaaatgtgattctgttgcttctgcaataattcggatgtaactacttctgtcttcccttcataattgggtttcacctaatgttttctagctcaatttgttgattcacaagtgagctgttcgttttgctttgtataatcggtttatggttaccaacatgagtattgatccaaagttgctttttgtcaatcttccgaaaggtagacactttgatgttttgatgccccgactctcctaaaagtaatgatttaaggctccatcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="27022" stop="24158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26722" g_stop="26598" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26597" i_stop="24790" i_length="1808">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24789" g_stop="24454" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="463" r_length="338" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="478"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-U335590" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335590" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26722" e_stop="26598"/>
          <exon e_start="24789" e_stop="24454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAGGTATAACTTTCAGGCTTTCCATCCATATTTTTCGTTGGCAATTTCCATTGCAATTGAATTACAAAGCTACTATTCAATAGTTTGCACTGAAATTTCAATTGGCTTGCTTATGTTTTTTGGGGCTTATTTCTGTTAGCTCTGTTTTTTTCTTAAAGCATTTGTGAATTTGTTGGCTCACTAGCTTGTTGATCTCATATTCCAACAAAAGTACTCGTATGGTGACACTGCTTTTAGAAGTTACTTGTTACTTACCAGAAAGTCGTCTTCTGGTGAACATTCCAGAATGCGTTGGAGGTGTACATTCTACTTCACTTGTATTTGCACTGGTCATGTACCAAAATTCTTCCTAAACGCCTGTTGGCCGTGTCATTGCAGACCTTTTGTAAACCACGGATGGAATAACCTGTAACTATATGATCCTTTTTTTAAAACATTAAGTGGTCGGAATGTAAATACCTCGGGATTTATCGAAGGTTAATGATGAAGGGATCGTAGTGCACTTGTATAAAGTCTCTGCGAGGTTTATTGATTTTGCTTGTTTCTTATCATTTCTGCTCAGTTATTAAACACACGTGTTGATGTCATTTTGCATTGTTCATATTGTGAGTCTGCATTCTCTGTCTAGTCTGAGAAGGGCCTACCCTCCCTGATGTCACAAGTTGATCAATTTCTTGTCTGGATGAAGGCTGCATGTTGAAAAATCTAAAAAATGGAAGTTCATTTGGTGGTTTTAATAATATAAATGTTCACATGTCATATTGATTCATAGACTCATTTGCTCGACTTTTCTGATTTTGATGTGCATCAATAAGCGTCCACAAAAGGATCTTTCACCCTGATAAGTGCAAGCGACCATTAAAGGTTATTCTACATTGGTATTGGTTCCCTGATTGTCATTTGATAGGGTCATATGATAGATCATGAACTTGGATACATATCTGGATTTTTTGCAGTTATGCCATTGCTTTTGTGGGAATTCAGCTTAGATCCATTATGTTGCCATAAATGTGTGCCAGTTTCAAAATGGCCTTCAATTGTTAATAGTGAATAAGACTGTTTTCATTAATGTTCACCTTCAAGTGATCTATATGCCATCAGAATGTGCAAAGAAATGCACAAATTATAACATCTATTATAGCCATGATATTTTATCAGCATCACTATTGTTATACATTCTGTGTGAAAATCTTTATCGAATTATTTGATAGTTTAACCATAATGACTTGTTTTTAAGCTTCTCGTTTTTACCCGTGAACCTCCTAATTGAATGTTCCCTGGTTTCTGATGATGTTTAAAATGAACACGAGTCATTTCTGCTAGGTTGTATCCTTATTCTGTAAATCAAAAAATTCACTCACTTCTATTGGATAATTCAGCGTAAAAAACTGATCAGCTGTTGTAGAATGAACTTCATAAGTGGACAGTTTCTTATTTTCATCTTTAAATTTTGAATTTGTTTGTGTCGTTTTTTCTTGTTTCCTTGTATCCTTCATGTATTATTTTGTTTTGATCGAATAGTAATGAGATCAACCTTATGGTAGCTCACTTCATGCTTGTCATTTGATTTTCCTCTGTGAAATAGACAATGTGGTTCCGAGACGCCCACACAGTGGGAACTTCATGCACATGCATTGCTGTCCTTTTTCTGTTCTTCTTTTAAATATATAAACCAGTGCTTCTTGATCTTGTGTTTAAGGTTTGGTTTATTGATAGATATTGAACTATGTAAAGCATCTAAAGAAATTCTTCATTTTTTGTTTTGATTCCCTGAGACCATTTCTGACTTAAGATTCTCTTCCTGTCTCCAGATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTA-A-TCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGTTTTTTGTCAATCTTCCGATTTCAAGACACTTCCATGTTTTGATGCCCTGACTTTACCTGAATTAATGATTTAAGGCTCCATCAAAATGAT</genome_strand>
        <mrna_strand>CGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGATGTGTTTAAGGCTACTTATCAGACACCAAGCAAGAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACTTCGTGGGACTTTGAAATGTGATTCTGTTGCTTCTGCAATAATTCGGATGTAACTACTTCTGTCTTCCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTATAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGCTTTTTGTCAATCTTCCGAAAGGTAGACACTTTGATGTTTTGATGCCCCGACTCTCCTAAAAGTAATGATTTAAGGCTCCATCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335591" ref_strand="+" ref_description="SGN-U335591        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At5g42960.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:XP_470465.1) | chr1:17098420-17100446 REVERSE | Aliases: F27F5.25, F27F5_25(evalue: 3e-66, score=248) genbank/nr: F27F5.25(evalue: 2e-64, score=248)">
      <seq>ccggccccaagtgttagagccatccatcagcgatttcctaattcctaaacctcaaatctcctcctccttatcccgctcgctagagaatcgaaaaaaatcgaatacagtccatttttcactcggcgacgatgaaggcttcattcaaagcacgatatgagcccgacaaagccgccgccaacgctactgttgcattcaacgccggcgaccttaagctccgagcctacatgaccgatgctactgttgtcaaaggtcccagcttaaacggattatctctggccgttgagaaacctggattgttcatcgccgactacaacgtcccgaagaaggacattaggtttcaattcatgaactcaatcaaggctctggagaagccattgaatttgaattacattcattttcatggagacaagcgaacaatattggatggaactttggtggttgattctgccaacaaggtgtcggctaatcatgtcatgggctcacgaagttgtcaattacagtacacatatgtgcacggaggaatcactactttcgagcccatctatgatacagcaaacaatgcgtgggacttcatggtatcacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="28428" stop="26400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28128" g_stop="27803" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26957" g_stop="26700" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="584" r_length="258" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-U335591" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28128" e_stop="27803"/>
          <exon e_start="26957" e_stop="26700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCCCAAGTGTTAGAGCCATCCATCAGCAATTTCCTAATTCCTAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAGGTCTGGACTCGATTCTGCATATGTCAGTTTTACTAATCACCGTCGATATAGTGAAAAATGTTATAGTTAAATTGAATGTAATATATACACATGATTTACATAGACTATTCTAACTAGTTCGGAATTGAGATTTAGTTGGTTAATTGATTGATTGTGCTGTAAATTCGAAATGTTTATTTGGAAGTTTTGTTGTTTCTGGAAATTCCAGTGGCAAATACTCTAGTTAAATTGAATAGAGTATACACAATTAACTTACATAGCTGATCCTAACTAGTTTGGAATTGAGATGTAGTTGATTAATTGATTGAGAGCCTGGGTTGACTTTTGACCTATAACCAATAGAAATTATACTTAGGGCTTTTAACTTATTTTTGCTTAAAAGCAAGTGCTTTATAAGCACTTTTTATATTTATCCAAACACTTCAAAACTACTTGCTGGGTAAAAACACTTAAAATAAGCCAATCCAAACAAGCTCTAAGTCGTGTTTTAGAATTCACTCTAGCTCGAAATGTGTACTATAGAAAGTTTGCTGTTTCTGAACATTCAGTGAAAAGTAGTCTAGTTAGAAATATTGAATAGAGTATATACAGTTGATTTACATAGCCGGTCCGAACTAGTTTGGAATTGAGAAGTAGTTGGTTAATTGAGTGAATTGTGTTTTCGAATTTGGTTTAGCTCTTAATGTTCACTATTGAAAGTTTTATAGTTTTTGGACATTCGGTTTCAATTTAGGTCGTCTGTGAAGAATATTCTAGTTAAATAGAAGGGCATTGAGATGTAGTTGATTGATAGATCGTGTTTGTAAATTGCATTAGCTCTTAATATTCAAGTGTTGTGGTTTCAGGACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGT</genome_strand>
        <mrna_strand>CCGGCCCCAAGTGTTAGAGCCATCCATCAGCGATTTCCTAATTCCTAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTACATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTATCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGCCGACTACAACGTCCCGAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTAGGTTTCAATTCATGAACTCAATCAAGGCTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCATGTCATGGGCTCACGAAGTTGTCAATTACAGTACACATATGTGCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAACAATGCGTGGGACTTCATGGTATCACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341871" ref_strand="+" ref_description="SGN-U341871        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G75160.1 | Symbol: None | expressed protein, contains Pfam profile PF04788: Protein of unknown function (DUF620) | chr1:28213098-28215465 FORWARD | Aliases: F22H5.11, F22H5_11 (evalue: 2e-30, score=129) genbank/nr: gi|9858773|gb|AAG01120.1| BAC19.5 [Lycopersicon esculentum](evalue: 9e-31, score=137)">
      <seq>accaaagaaacacctctctggaaaaaaataaaaaaagtgacagagaaatatccatttctccccaaatttctctcaaaatcatttgctccgtttaatcctctctcaaaggaggaaaaaaaggaaacaccaattttttagttctttttcccaacaatcttcctctttctgtttatataattttttttgaagaatagtgttgtattttttacatcatgagaaaattgagccctaatttggacaaagaagatggattggatacagttttggaggttcctcttccagaagaaatgtttagcaaaacggatggcagcagtgcagcaatcaggtggaagaagatgctaaatctaatacgagctgataaattgccaaatcgatcgaaggcggtttcttctggaaataatgatcaatttatgttcttgttgaaaattgttggatctgctcttataccttttcaggttcaattggatcatgcaattaacttgcctgttagagatggttgcattaaagcttcttctgcaaaatacatagtacaacaatacctagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="42084" stop="44227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42384" g_stop="42886" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42887" i_stop="43886" i_length="1000">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.352" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43887" g_stop="43927" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="544" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U341871" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42384" e_stop="42886"/>
          <exon e_start="43887" e_stop="43927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAGAAACACCTCTCTGGAAAAAAATAAAAAAAGTGACAGAGAAATATCCATTTCTCCCCAAATTTCTCTCAAAATCATTTGCTCCGTTTAATCCTCTCTCAAAGGAGGAAAAAAAGGAAACACCAATGTTTTAGTTCTTTTTCCCAACAATCTTCCTCTTTCTGTTTATATAATTTTTTTTGAAGAATAGTGTTGTATTTTTTACATCATGAGAAAATTGAGCCCTAATTTGGACAAAGAAGATGGATTGGATACAGTTTTGGAGGTTCCTCTTCCAGAAGAAATGTTTAGCAAAACGGATGGCAGCAGTGCAGCAATCAGGTGGAAGAAGATGCTAAATCTAATACGAGCTGATAAATTGCCAAATCGATCGAAGGCGGTTTCTTCTGGAAATAATGATCAATTTATGTTCTTGTTGAAAATTGTTGGATCTGCTCTTATACCTTTTCAGGTTCAATTGGATCATGCAATTAACTTGCCTGTTAGAGATGGTTGCATTGTGAGTTGCTATGTACATCTCTCCTTCCTGTTTTTTGTTTTTGGATAAAATATAATAATAAATTAATAATAACAAATAATAAGCAAAAAAAAAAAAAAAAAAGAACAGCTCAGAAAAATTCTGTGTTCTATCAAGGTTGGGGGCTGGGGGAAGGGGTGAGAGGTGGGAAGCCTATATGTAAATATTAGTGATTTCACATTTCGAACTCGTGACTCATAAGTTACTAGTATGTTGTGTAGTGTTATTCATTCCACATTATTTCGTTGTTGTTATTGCTTTTATTTCCATGTTCCCTTTTTCAAACTTCTGGGTCTATCTGAAACGGTCTCTATCTAAACCATAGGGGTAAGGTCTGGGTATATTGTACTCTTTGCAGACCACACGTGTGGGATCATATTGGGTATATTGTTGTTATTCATCTATAGGTTACGCTGAGACAATTTTATTATTGCTTCAAAGCTCGCCTTCTTTTGGGATATTTGTATTGGACAAAACAATATTTTCTTAAATGGTTAACTGAATTGACAAAGTTTGAATATTCTTGAACTTGATTCGTGAATAAGAATGCTAATGTACTTTTTTTTAAGCAATCAATCAATCACCTCTGCATCATATTTTATCAAACTAATCAGGTCGATTTTATGAATTCGCTCTCTCTATATTTGGCTCTATTCCGAATGTAGTAGCTGTTTTGGTGGGTAAGGGCATGGCTGCATGAAGGCAAAGGGGTTCAATTGGATCTCTTTTGCCGGAAAATTATATTGTGCAAGTATATATTCTAGGATCTATGTCTGATGTTCTATTGAAGTGTGTTATCATCTCATCTAAAAGCTTAAGCGGTTAGAGATAACACATTTTTATTTACTTAATTATATTGTGAACGTGAAAAACAGAAGATAAATGATGTATCAAATATCACAAGATCTTAACTGATAGATTTTGCTTTAACTTCTCAAACAAAAAACATGCTGAAACCCTTCTCTAATGTTGTGGGCATCAGAAAGCTTCTTCTGCAAAATACATAGTACAACAATACCTAGC</genome_strand>
        <mrna_strand>ACCAAAGAAACACCTCTCTGGAAAAAAATAAAAAAAGTGACAGAGAAATATCCATTTCTCCCCAAATTTCTCTCAAAATCATTTGCTCCGTTTAATCCTCTCTCAAAGGAGGAAAAAAAGGAAACACCAATTTTTTAGTTCTTTTTCCCAACAATCTTCCTCTTTCTGTTTATATAATTTTTTTTGAAGAATAGTGTTGTATTTTTTACATCATGAGAAAATTGAGCCCTAATTTGGACAAAGAAGATGGATTGGATACAGTTTTGGAGGTTCCTCTTCCAGAAGAAATGTTTAGCAAAACGGATGGCAGCAGTGCAGCAATCAGGTGGAAGAAGATGCTAAATCTAATACGAGCTGATAAATTGCCAAATCGATCGAAGGCGGTTTCTTCTGGAAATAATGATCAATTTATGTTCTTGTTGAAAATTGTTGGATCTGCTCTTATACCTTTTCAGGTTCAATTGGATCATGCAATTAACTTGCCTGTTAGAGATGGTTGCATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCTTCTTCTGCAAAATACATAGTACAACAATACCTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321765" ref_strand="+" ref_description="SGN-U321765        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:26256728-26258741 FORWARD | Aliases: K21L13.17, K21L13_17(evalue: 5e-36, score=148) genbank/nr: gi|18424975|ref|NP_569015.1| expressed protein [Arabidopsis thaliana] gi|21537019|gb|AAM61360.1| unknown [Arabidopsis thaliana] gi|27754375|gb|AAO22636.1| unknown protein [Arabidopsis thaliana] gi|28394067|gb|AAO42441.1| unknown protein [Arabidopsis thaliana](evalue: 3e-34, score=148)">
      <seq>tcatcttcttgattcttcaataaaaaaatcaaaaaatttcttactctcagttttgcttataaagatctaatcttttctgaattgggtgaaagaaaaatcatgagaatataccaagaaatgaaagatgaagaagctcaatcaagaattagtacaaatacagtaacaacagtttcagtagtagcaacaccagcagcagcagcaacatcaactgtaaaaaaagatcaaggatttagtggggtatttggtaaaggtaaatacaaattgtgggtattggcagcaattcttttgctagctttttggtctatgtttactggctcacttactcttagtctcaactggtctacttcaaatctcagccgtttatctcatgcttctgatttcacgatccatgaagatcttgatattctggtattggaggaaagagagaagatggtaaaacatatgtgggatgtgtacacacagaatagcaggatcaggttgcctaagttctggcaagacgctttccaagcagcgtacctagatttgacgagtgattcaccagctacccgagacactgctgtgtcggagattgccaagatgtccctccgctccacttccacttatgaatcaccttccaacaagaaaccagaaccaagagaagcagagaaagaaaaaggatctaaaagtccggcgaagacgacaactacaaagaaacagaaatgatgatgagggaaatggttgtgttgagaattaagatggaaggtagatgcaacaaagttgtggttgaactcattcttcttggtagtcaaagttctttacttgtatttatactactactactagagctttatttagatatatcataagatcaaaatttagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="51174" stop="54548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51474" g_stop="51895" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51896" i_stop="52729" i_length="834">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52730" g_stop="52956" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="635" r_length="227" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52957" i_stop="54023" i_length="1067">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54024" g_stop="54248" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="860" r_length="225" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U321765" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51474" e_stop="51895"/>
          <exon e_start="52730" e_stop="52956"/>
          <exon e_start="54024" e_stop="54248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCTTGATTCTTCAAAAATAAAAAATCAAAAAAATTCTTACTCTCAGTTTTGCTTATAAAGATCTAATCTTTTCTGAATTGGGTGAAAGAAAAATCATGAGAATATACCAAGAAATGAAAGATGAAGAAGCTCAATCAAGAATTAGTACAAATACAGTAACAACAGTTTCTTCAGTTTCAGCAGTAGCAACACCAGCAGCAGCAGCAGCAACATCAACTGTAAAAAAAGATCAAGGATTTAGTGGGGTTTTTGGTAAAGGTAAATACAAATTGTGGGTATTGGCTGCAATTCTTTTGCTAGCTTTTTGGTCTATGTTTACTGGCTCACTTACTCTTAGTCTCAACTGGTCTACTTCAAATCTCAGCCGTTTATCTCATGCTTCTGATTTCACGATCCATGAAGATCTTGATATTCTGGTAATGTTTCTTGATCCTTTTTGCTTGGTGGTTTAGTTTAGTTAAAGGCTAAATCTTGAGTAATTATGGAAAAAGATTTGATTTTTGGTACATGGGTCAGTTTGCTAAAAGGCAAATCATGAGTAATCATGAAAAAAGATTAGATTTTTGCTACATGGGTCAGTTTGCTAAATGGTAAATGTTAAGTAATTAAGAAAAAAAATTGATTGTTGCTAGATGGGTCATTTTGCTAACAGACAAAATCATAAGTTACTAAGAAAAAGGTTAAATTTTTGCTACATGGGTTAGTTTTCTAAAAGGCAAAATCATAAGTAATTAAGAAAAAGATTTGTTTTGCTACATGGGTCATTTTGCTAAAAGGCAAATCATAAAGAAAAATGATTTTTTTTTTTTGCTACATGGGTTGTTTACTTTAAAGGCAGATAGATTTTTGCTGTATATATTGTTAGTACTAGTATATATAGCAGACTCAGCTTGTTTAGTAATTGAAATTAGGTGATTATTGGTAGTATTAGGAGTACATTTCAGGTCAATCACCTCAAAAAGTTCTTTTCTTTTTTGCTTTCACTCTTTCTAATCTTCTTTGTCTACTTTAAATAGTGGTTTTGTTTTGTGGGTTTCTTGATTTCCTGATGTTTCACCATATCATGTGTAAAAACGTCGAATTGATTTTCTAGATATTAAAGCAAATCCTACATTTTTGCTTGATGTAGTAGTAATACAGTAAAGCTCATTTAAAGTTTGATTTTGAGATTAAGTTGATTGGATCAAGTAGGAGTACATTTTTACACCATTTTGTGTATTAAAATTTTGAAGTTTTCTACTGATTCGTAGGTATTGGAGGAAAGAGAGAAGATGGTAAAACATATGTGGGATGTGTACACACAGAATAGCAGGATCAGGTTGCCTAAGTTCTGGCAAGACGCTTTCCAAGCAGCATACCTAGATTTGACGAGTGATTCACCAGCTACCCGAGACACTGCTGTGTCGGAGATTGCCAAGATGTCCCTCCGCTCCACTTCCACTTATGAATCACCTTCCAACAAGAAACCAGAACCAAGGTAAATTTTTCCAGTGAGACTTGTTTTATTGTATATATATCAATCAACTACGCCTCAGTTCCAAACTAGTCGAAATCAGGCTGTATGAATTCTTGATATACGTTCTGCTCAAAGTTGTGACAGTAATTAGGGAGTTCCTTAATCCTTGTTCTTCTCTTTACTGTGCTTTGTCATATGGGATGAGAATTAGCTTAGCATGCAACTTAATCTTGAGGGGCAACCGTGGTCTAGTGGTAAATGAAATAGATTGAGAACTATGAAGCCTAAGGTTCATATTCCAACGGAAGCAAAACACTAGGTGATCTCTCCATTTCTCTCCAAGCCTCAGTGGATAGAGTTATGTGATGCCGGTGAGGTAGCAGATACCCAATCTGGTCCGGATACCACACCTATTAAAAAAAAAGTAGTCCAAAAGTCAAAACTGAGGAATTCTAACAAAATTTCTTTACTGCTTTTTAGTATATTGGATGATGATTTTTTATGGGGTTCTCTGTCTTGAGGAGTAACTATAAAAGTGTGGAAGGGTAGTTCAAGTTATCCTAAAATAGGTTGAAACTGAATATGCAGAGTATCTACTTCTAACTAGCAACTCTTTACTGTCCTATATCACATGGGGTGGTTATTTTTGTGGGGCATCCTAAAAAAAGTACTTCTCCTAAGTTTTCTTTAAATTCCTAAGAAGATATGAAACTAAATTTACACTAGAATTTGTGTAAGTCTAAGATCATCTCATCTTAAAGTTGAAGAACGTCTTTTTTATAGTGTGTATAACCTAAAAATGCAAAAGGGTAGTTCAAAGTTTTCCTAAAATTCCTAAGATTCGAAAATGAATCTACACTAGCATTTGTTGAACTGTGAGACTATCTCATCAAATACGTCGTTTGATAAAGGATATGATAGTGAGATTCCAACCACTACCTGCTTTGATACCATGTCGAAGTGTATAATCATGTTATTCAAAAGTTTGAACCATTAAAGAGCACACATTCATTTATTTAATTATATTCTCAACAAAGTTTACGTCTAACGAACTATTGTTGAATTTTGTTGGTTATGAATATGAACAGAGAAGCAGAGAAAGAAAAAGGATCTAAAAGTCCGGCGAAGACGATAACTACAAAGAAACAGAAATGATGATGAGGGAAATGGTTGTGTTGAGAATTAAGATGGAAGGTAGATGCAACAAAGTTGTGGTTGAACTCATTCTTCTTGGTAGTCAAAGTTCTTTACTTGTATTTATACTACTACTACTAGAGCTTTATTTAGATATATCATAAGATCAAAATTTAGTG</genome_strand>
        <mrna_strand>TCATCTTCTTGATTCTTC-AATA-AAAAAATCAAAAAATTTCTTACTCTCAGTTTTGCTTATAAAGATCTAATCTTTTCTGAATTGGGTGAAAGAAAAATCATGAGAATATACCAAGAAATGAAAGATGAAGAAGCTCAATCAAGAATTAGTACAAATACAGTAACAACAG--T-TTCAG--T----AGTAGCAACA-C--CAGCAGCAGCAGCAACATCAACTGTAAAAAAAGATCAAGGATTTAGTGGGGTATTTGGTAAAGGTAAATACAAATTGTGGGTATTGGCAGCAATTCTTTTGCTAGCTTTTTGGTCTATGTTTACTGGCTCACTTACTCTTAGTCTCAACTGGTCTACTTCAAATCTCAGCCGTTTATCTCATGCTTCTGATTTCACGATCCATGAAGATCTTGATATTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGGAGGAAAGAGAGAAGATGGTAAAACATATGTGGGATGTGTACACACAGAATAGCAGGATCAGGTTGCCTAAGTTCTGGCAAGACGCTTTCCAAGCAGCGTACCTAGATTTGACGAGTGATTCACCAGCTACCCGAGACACTGCTGTGTCGGAGATTGCCAAGATGTCCCTCCGCTCCACTTCCACTTATGAATCACCTTCCAACAAGAAACCAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCAGAGAAAGAAAAAGGATCTAAAAGTCCGGCGAAGACGACAACTACAAAGAAACAGAAATGATGATGAGGGAAATGGTTGTGTTGAGAATTAAGATGGAAGGTAGATGCAACAAAGTTGTGGTTGAACTCATTCTTCTTGGTAGTCAAAGTTCTTTACTTGTATTTATACTACTACTACTAGAGCTTTATTTAGATATATCATAAGATCAAAATTTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321766" ref_strand="+" ref_description="SGN-U321766        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:26256728-26258741 FORWARD | Aliases: K21L13.17, K21L13_17(evalue: 4e-36, score=148) genbank/nr: gi|18424975|ref|NP_569015.1| expressed protein [Arabidopsis thaliana] gi|21537019|gb|AAM61360.1| unknown [Arabidopsis thaliana] gi|27754375|gb|AAO22636.1| unknown protein [Arabidopsis thaliana] gi|28394067|gb|AAO42441.1| unknown protein [Arabidopsis thaliana](evalue: 3e-34, score=148)">
      <seq>catcttcttgattcttcaataaaaaaatcaaaaaatttcttactctcagttttgcttataaagatctaatcttttctgaattgggtgaaagaaaaatcatgagaatataccaagaaatgaaagatgaagaagctcaatcaagaattagtacaaatacagtaacaacagtttcagtagtagcaacaccagcagcagcagcaacatcaactgtaaaaaaagatcaaggatttagtggggtatttggtaaaggtaaatacaaattgtgggtattggcagcaattcttttgctagctttttggtctatgtttactggctcacttactcttagtctcaactggtctacttcaaatctcagccgtttatctcatgcttctgatttcacgatccatgaagatcttgatattctggtgttggaggaaagagagaagatggtaaaacatatgtgggatgtgtacacacagaataacaggatcaggttgcctaagttctggcaagacgctttccaagcagcgtacctagatttgacgagtgattcaccagctacccgagacactgctgtgtcggagattgccaagatgtccctccgctccacttccacttatgaatcaccttccaacaagaaaccagaaccaagagaagcagataaagaaaaaggatcgaaaagtcttcgcactacaaagaaacagaaatgatgatgagggaaatagttgtgttgagaattaagatgcaaggtagatgcaacaaagttgtggttgaactcagttcttcttggtagtcaaagttttttacttgtattttatactactactactagagctttatttagatatatcataagatcaaaatttagtgaaggcaaaggtcttccttttgattgtttccacttaataatatgccattttaaaaacagctggttaattatgttaactaaaatcagttattcttatttggttgatccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="51175" stop="54667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51475" g_stop="51895" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51896" i_stop="52729" i_length="834">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52730" g_stop="52956" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="634" r_length="227" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52957" i_stop="54023" i_length="1067">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54024" g_stop="54370" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="971" r_length="337" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U321766" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>995</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51475" e_stop="51895"/>
          <exon e_start="52730" e_stop="52956"/>
          <exon e_start="54024" e_stop="54370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTCTTGATTCTTCAAAAATAAAAAATCAAAAAAATTCTTACTCTCAGTTTTGCTTATAAAGATCTAATCTTTTCTGAATTGGGTGAAAGAAAAATCATGAGAATATACCAAGAAATGAAAGATGAAGAAGCTCAATCAAGAATTAGTACAAATACAGTAACAACAGTTTCTTCAGTTTCAGCAGTAGCAACACCAGCAGCAGCAGCAGCAACATCAACTGTAAAAAAAGATCAAGGATTTAGTGGGGTTTTTGGTAAAGGTAAATACAAATTGTGGGTATTGGCTGCAATTCTTTTGCTAGCTTTTTGGTCTATGTTTACTGGCTCACTTACTCTTAGTCTCAACTGGTCTACTTCAAATCTCAGCCGTTTATCTCATGCTTCTGATTTCACGATCCATGAAGATCTTGATATTCTGGTAATGTTTCTTGATCCTTTTTGCTTGGTGGTTTAGTTTAGTTAAAGGCTAAATCTTGAGTAATTATGGAAAAAGATTTGATTTTTGGTACATGGGTCAGTTTGCTAAAAGGCAAATCATGAGTAATCATGAAAAAAGATTAGATTTTTGCTACATGGGTCAGTTTGCTAAATGGTAAATGTTAAGTAATTAAGAAAAAAAATTGATTGTTGCTAGATGGGTCATTTTGCTAACAGACAAAATCATAAGTTACTAAGAAAAAGGTTAAATTTTTGCTACATGGGTTAGTTTTCTAAAAGGCAAAATCATAAGTAATTAAGAAAAAGATTTGTTTTGCTACATGGGTCATTTTGCTAAAAGGCAAATCATAAAGAAAAATGATTTTTTTTTTTTGCTACATGGGTTGTTTACTTTAAAGGCAGATAGATTTTTGCTGTATATATTGTTAGTACTAGTATATATAGCAGACTCAGCTTGTTTAGTAATTGAAATTAGGTGATTATTGGTAGTATTAGGAGTACATTTCAGGTCAATCACCTCAAAAAGTTCTTTTCTTTTTTGCTTTCACTCTTTCTAATCTTCTTTGTCTACTTTAAATAGTGGTTTTGTTTTGTGGGTTTCTTGATTTCCTGATGTTTCACCATATCATGTGTAAAAACGTCGAATTGATTTTCTAGATATTAAAGCAAATCCTACATTTTTGCTTGATGTAGTAGTAATACAGTAAAGCTCATTTAAAGTTTGATTTTGAGATTAAGTTGATTGGATCAAGTAGGAGTACATTTTTACACCATTTTGTGTATTAAAATTTTGAAGTTTTCTACTGATTCGTAGGTATTGGAGGAAAGAGAGAAGATGGTAAAACATATGTGGGATGTGTACACACAGAATAGCAGGATCAGGTTGCCTAAGTTCTGGCAAGACGCTTTCCAAGCAGCATACCTAGATTTGACGAGTGATTCACCAGCTACCCGAGACACTGCTGTGTCGGAGATTGCCAAGATGTCCCTCCGCTCCACTTCCACTTATGAATCACCTTCCAACAAGAAACCAGAACCAAGGTAAATTTTTCCAGTGAGACTTGTTTTATTGTATATATATCAATCAACTACGCCTCAGTTCCAAACTAGTCGAAATCAGGCTGTATGAATTCTTGATATACGTTCTGCTCAAAGTTGTGACAGTAATTAGGGAGTTCCTTAATCCTTGTTCTTCTCTTTACTGTGCTTTGTCATATGGGATGAGAATTAGCTTAGCATGCAACTTAATCTTGAGGGGCAACCGTGGTCTAGTGGTAAATGAAATAGATTGAGAACTATGAAGCCTAAGGTTCATATTCCAACGGAAGCAAAACACTAGGTGATCTCTCCATTTCTCTCCAAGCCTCAGTGGATAGAGTTATGTGATGCCGGTGAGGTAGCAGATACCCAATCTGGTCCGGATACCACACCTATTAAAAAAAAAGTAGTCCAAAAGTCAAAACTGAGGAATTCTAACAAAATTTCTTTACTGCTTTTTAGTATATTGGATGATGATTTTTTATGGGGTTCTCTGTCTTGAGGAGTAACTATAAAAGTGTGGAAGGGTAGTTCAAGTTATCCTAAAATAGGTTGAAACTGAATATGCAGAGTATCTACTTCTAACTAGCAACTCTTTACTGTCCTATATCACATGGGGTGGTTATTTTTGTGGGGCATCCTAAAAAAAGTACTTCTCCTAAGTTTTCTTTAAATTCCTAAGAAGATATGAAACTAAATTTACACTAGAATTTGTGTAAGTCTAAGATCATCTCATCTTAAAGTTGAAGAACGTCTTTTTTATAGTGTGTATAACCTAAAAATGCAAAAGGGTAGTTCAAAGTTTTCCTAAAATTCCTAAGATTCGAAAATGAATCTACACTAGCATTTGTTGAACTGTGAGACTATCTCATCAAATACGTCGTTTGATAAAGGATATGATAGTGAGATTCCAACCACTACCTGCTTTGATACCATGTCGAAGTGTATAATCATGTTATTCAAAAGTTTGAACCATTAAAGAGCACACATTCATTTATTTAATTATATTCTCAACAAAGTTTACGTCTAACGAACTATTGTTGAATTTTGTTGGTTATGAATATGAACAGAGAAGCAGAGAAAGAAAAAGGATCTAAAAGTCCGGCGAAGACGATAACTACAAAGAAACAGAAATGATGATGAGGGAAATGGTTGTGTTGAGAATTAAGATGGAAGGTAGATGCAACAAAGTTGTGGTTGAACTCA-TTCTTCTTGGTAGTCAAAGTTCTTTACTTGTA-TTTATACTACTACTACTAGAGCTTTATTTAGATATATCATAAGATCAAAATTTAGTGAAGGCAAAGGTCTTCCTTTTGATTGTTTCCACTTAATAATATGCCATTTCAAAACCAGCTGGTTAATTATGTTGTTAACTAAAATCGGTTATTCTTATTTGGTTGATCCAAATCATATAGTA</genome_strand>
        <mrna_strand>CATCTTCTTGATTCTTC-AATA-AAAAAATCAAAAAATTTCTTACTCTCAGTTTTGCTTATAAAGATCTAATCTTTTCTGAATTGGGTGAAAGAAAAATCATGAGAATATACCAAGAAATGAAAGATGAAGAAGCTCAATCAAGAATTAGTACAAATACAGTAACAACAG--T-TTCAG--T----AGTAGCAACA-C--CAGCAGCAGCAGCAACATCAACTGTAAAAAAAGATCAAGGATTTAGTGGGGTATTTGGTAAAGGTAAATACAAATTGTGGGTATTGGCAGCAATTCTTTTGCTAGCTTTTTGGTCTATGTTTACTGGCTCACTTACTCTTAGTCTCAACTGGTCTACTTCAAATCTCAGCCGTTTATCTCATGCTTCTGATTTCACGATCCATGAAGATCTTGATATTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGAGGAAAGAGAGAAGATGGTAAAACATATGTGGGATGTGTACACACAGAATAACAGGATCAGGTTGCCTAAGTTCTGGCAAGACGCTTTCCAAGCAGCGTACCTAGATTTGACGAGTGATTCACCAGCTACCCGAGACACTGCTGTGTCGGAGATTGCCAAGATGTCCCTCCGCTCCACTTCCACTTATGAATCACCTTCCAACAAGAAACCAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCAGATAAAGAAAAAGGATCGAAAAGT-CTTC---G-C----ACTACAAAGAAACAGAAATGATGATGAGGGAAATAGTTGTGTTGAGAATTAAGATGCAAGGTAGATGCAACAAAGTTGTGGTTGAACTCAGTTCTTCTTGGTAGTCAAAGTTTTTTACTTGTATTTTATACTACTACTACTAGAGCTTTATTTAGATATATCATAAGATCAAAATTTAGTGAAGGCAAAGGTCTTCCTTTTGATTGTTTCCACTTAATAATATGCCATTTTAAAAACAGCTGGTTAATTA---TGTTAACTAAAATCAGTTATTCTTATTTGGTTGATCCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320985" ref_strand="+" ref_description="SGN-U320985        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | GYF domain-containing protein, contains Pfam profile: PF02213 GYF domain | chr5:17241664-17248583 FORWARD | Aliases: MBD2.15, MBD2_15(evalue: 8e-114, score=407) genbank/nr: gi|15239132|ref|NP_199109.1| expressed protein [Arabidopsis thaliana] gi|9758584|dbj|BAB09197.1| gb|AAC80623.1~gene_id:MBD2.15~similar to unknown protein [Arabidopsis thaliana](evalue: 7e-112, score=407)">
      <seq>gtaggtccaggaagaagagagagcagacccgaagttgctattgctgatgttgtggatgaatatccagggcaaaacccaccaatttcacagtccaacacccaagtacagtctggacagcgagcttggaaacctgctcctggtttcaagccgaagtctttgttggaaattcaagaggaagagcagaggagagcacaagcagaaataactactacagaggtcgccacatctctgagctccttaagtgtgtctactccatgggctggatttgttactaattcagatcataaattagttagagatactcagcaagatgctgccagcactgatttgaatatgaataactcagatgtttctctcgaccagaagactaagaaaagtcaattgcatgacgtactggctgagaacactttggccaagtcaagcgatagagagagagattttcctgatatgacatctgttcaaccttccgtgtctgtcaatgatgataacaactttattgaagctaaagaaactaaaaagagccgcaaaagatctgcaaaatctaagggagcaggagcaaaggcctcaatgcccacagctgcttccgaggtgtctgttgcatcaagtcctattgacaaagtcaaaagcttgcgtcaggtacaacctgaccaggaagtattacctgctataccatctggtccttcgctaggagattttgttgtttggaagggtgaatctgcaagttctgctactattcctgttccagcatggtccaccgactctgggaaaccctcaaaacccacatccttgcgggacatcctaaaggaacaagaaaagaaggttacttctggacagcagcatataccagtgccaacacagaaatctgtgccaaatccacctgcgagagtaggtggttcatcatggtctagttcatcgcccgccaaggctgcatctcctattcagattaactcacaagctggcgcttattcaaaaaataaagtggaggacgatttgttttggggcccaatagatcatcccaagcaagagtcaaagcaatctgaatatcctcagcttggaagtcaaggcagttggggaagcaagaccacaccagtgaaaggaagtcctggtggttcattgagcaggcaaaagtctgtcagcagtaagcctgcagaacgtctactatcctcatctcctgcgtcaggtcactcgtccctgaaagggaagaaggatgctttgacaaagcattcagaagcaatggatttcagagaatggtgtgagaatgaatgtgataggctcattggtacaagagataccagctttctggacttctgtttcaagcaatccaagtcagaggctgaaatgcttctgatagagaatcttggctcttatgatcctgatcatgaattcattgacaagttcctcaactacaaagactttttgcctgcggatgtttttgacatggccttccagggtcgtaatgatcgtaaggtcactggtgcaagtgccaaaaatgtgacttctaacagtgttggctttgaccagggcaactcaagtgttcaggattgggcctcaaagggaggaaagaagaagggtaagaagggcaagaaggttaacctttcagagttgggcttcaatgtggttagcaaccggataatgatgggagagattcagactgtagaagattaggtagaatgagggagggtacatactttgtgtttgagaatgtttgtaaatgctttaggattatctagcaacagaagcagtactatttaatctgctcaaagcaatttttgtgatactatttctgactttaggtcttctnnannnnnanaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="58226" stop="55420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57926" g_stop="56893" g_length="1034"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1034" r_length="1034" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56892" i_stop="56804" i_length="89">
            <donor d_prob="0.138" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56803" g_stop="56610" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1035" r_stop="1228" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56609" i_stop="56506" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56505" g_stop="56446" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1229" r_stop="1288" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56445" i_stop="56232" i_length="214">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56231" g_stop="55713" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1289" r_stop="1807" r_length="519" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1809" polyA_stop="1827"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-U320985" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1807</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57926" e_stop="56893"/>
          <exon e_start="56803" e_stop="56610"/>
          <exon e_start="56505" e_stop="56446"/>
          <exon e_start="56231" e_stop="55713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGTCCAGGAAGAAGAGAGAGCAGACCCGAAGTTGCTATTGCTGATGTTGTGGATGAATATCCAGGGCAAAACCCACCAATTTCACAGTCCAACACCCAAGTACAGTCTGGACAGCGAGCTTGGAAACCTGCTCCTGGTTTCAAGCCGAAGTCATTGTTGGAAATTCAAGAGGAAGAGCAGAGGAGAGCACAAGCAGAAATAACTACTACAGAGGTCGCCACATCTCTGAGCTCCTTAAGTGTGTCTACTCCATGGGCTGGATTTGTTACTAATTCAGATCATAAATTAGTTAGAGATACTCAGCAAGATGCTGCCAGCACTGATTTGAATATGAATAACTCAGATGTTTCTCTCGACCAGAAGACTAAGAAAAGTCAATTGCATGACGTACTGGCTGAGAACACTTTGGCCAAGTCAAGCGATAGAGAGAGAGATTTTCCTGATATGACATCTGTTCAACCTTCCGTGTCTGTCAATGATGATGACAACTTTATTGAAGCTAAAGAAACTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAGTCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTACTTCTGGACAGCAGCATATACCAGTGCCAACACAGAAATCTGTGCCAAATCCACCTGCGAGAGTAGGTGGTTCATCATGGTCTAGTTCATCGCCCGCCAAGGCTGCATCTCCTATTCAGATTAACTCACAAGCTGGCGCTTATTCAAAAAATAAAGTGGAGGACGATTTGTTTTGGGGCCCAATAGATCATCCCAAGCAAGAGTCAAAGCAGTACGGCAATTTACTTCCTCATCATCTCTTCTCCTCTCTCTCTCTTTCTCTTGATAAATTCCTCCTTTTTGTTGGTTGTAATCCTGCAGATCTGAATATCCTCAGCTTGGAAGTCAAGGCAGTTGGGGAAGCAAGACCACACCAGTGAAAGGAAGTCCTGGTGGTTCATTGAGCAGGCAAAAGTCTGTCAGCAGTAAGCCTGCAGAACGTCTACTATCCTCATCTCCTGCGTCAGGTCACTCGTCCCTGAAAGGGAAGAAGGATGCTTTGACAAAGCATTCAGGTAACCATTTGTTTTTTAAGAACTAATCAAAGATCTAAAGTAAACATTGTTTCTCAGCGGAAAAAGAAAAAAAAATATTAACACAATTTTCTTCTTTGTTTCAGAAGCAATGGATTTCAGAGAATGGTGTGAGAATGAATGTGATAGGCTCATTGGTACAAGAGGTATTTTTTAGAATTATCTCTCTTCTGGAATACTTTATTGCTCACTTGATTTAGATCTCTCTTCTGGAATACTTTATCACCCCATATATTTTGAATTGTGTCGGTAGTTGAGGAATTTCTCAAGTCCTACACTTTGACTGATGCTGAGAGTATCTACGTAGGACTATGCTGACAGTTTGTCTGATGTTTTCCCAAATTATTTTTGTTCATTCAGATACCAGCTTTCTGGACTTCTGTTTCAAGCAATCCAAGTCAGAGGCTGAAATGCTTCTGATAGAGAATCTTGGCTCTTATGATCCTGATCATGAATTCATTGACAAGTTCCTCAACTACAAAGACTTTTTGCCTGCGGATGTTTTTGACATGGCCTTCCAGGGTCGTAATGATCGTAAGGTCACTGGTGCAAGTGCCAAAAATGTGACTTCTAACAGTGTTGGCTTTGACCAGGGCAACTCAAGTGTTCAGGATTGGGCCTCAAAGGGAGGAAAGAAGAAGGGTAAGAAGGGCAAGAAGGTTAACCTTTCAGAGTTGGGCTTCAATGTGGTTAGCAACCGGATAATGATGGGAGAGATTCAGACTGTAGAAGATTAGGTAGAATGAGGGAGGGTACATACTTTGTGTTTGAGAATGTTTGTAAATGCTTTAGGATTATCCAGCAACAGAAGCAGTACTATTTAATCTGCTCAAAGCAATTTTTGTGATACTATTTCTGACTTTAGGTCTTCTAAATCAG</genome_strand>
        <mrna_strand>GTAGGTCCAGGAAGAAGAGAGAGCAGACCCGAAGTTGCTATTGCTGATGTTGTGGATGAATATCCAGGGCAAAACCCACCAATTTCACAGTCCAACACCCAAGTACAGTCTGGACAGCGAGCTTGGAAACCTGCTCCTGGTTTCAAGCCGAAGTCTTTGTTGGAAATTCAAGAGGAAGAGCAGAGGAGAGCACAAGCAGAAATAACTACTACAGAGGTCGCCACATCTCTGAGCTCCTTAAGTGTGTCTACTCCATGGGCTGGATTTGTTACTAATTCAGATCATAAATTAGTTAGAGATACTCAGCAAGATGCTGCCAGCACTGATTTGAATATGAATAACTCAGATGTTTCTCTCGACCAGAAGACTAAGAAAAGTCAATTGCATGACGTACTGGCTGAGAACACTTTGGCCAAGTCAAGCGATAGAGAGAGAGATTTTCCTGATATGACATCTGTTCAACCTTCCGTGTCTGTCAATGATGATAACAACTTTATTGAAGCTAAAGAAACTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAATCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTACTTCTGGACAGCAGCATATACCAGTGCCAACACAGAAATCTGTGCCAAATCCACCTGCGAGAGTAGGTGGTTCATCATGGTCTAGTTCATCGCCCGCCAAGGCTGCATCTCCTATTCAGATTAACTCACAAGCTGGCGCTTATTCAAAAAATAAAGTGGAGGACGATTTGTTTTGGGGCCCAATAGATCATCCCAAGCAAGAGTCAAAGCA.........................................................................................ATCTGAATATCCTCAGCTTGGAAGTCAAGGCAGTTGGGGAAGCAAGACCACACCAGTGAAAGGAAGTCCTGGTGGTTCATTGAGCAGGCAAAAGTCTGTCAGCAGTAAGCCTGCAGAACGTCTACTATCCTCATCTCCTGCGTCAGGTCACTCGTCCCTGAAAGGGAAGAAGGATGCTTTGACAAAGCATTCAG........................................................................................................AAGCAATGGATTTCAGAGAATGGTGTGAGAATGAATGTGATAGGCTCATTGGTACAAGAG......................................................................................................................................................................................................................ATACCAGCTTTCTGGACTTCTGTTTCAAGCAATCCAAGTCAGAGGCTGAAATGCTTCTGATAGAGAATCTTGGCTCTTATGATCCTGATCATGAATTCATTGACAAGTTCCTCAACTACAAAGACTTTTTGCCTGCGGATGTTTTTGACATGGCCTTCCAGGGTCGTAATGATCGTAAGGTCACTGGTGCAAGTGCCAAAAATGTGACTTCTAACAGTGTTGGCTTTGACCAGGGCAACTCAAGTGTTCAGGATTGGGCCTCAAAGGGAGGAAAGAAGAAGGGTAAGAAGGGCAAGAAGGTTAACCTTTCAGAGTTGGGCTTCAATGTGGTTAGCAACCGGATAATGATGGGAGAGATTCAGACTGTAGAAGATTAGGTAGAATGAGGGAGGGTACATACTTTGTGTTTGAGAATGTTTGTAAATGCTTTAGGATTATCTAGCAACAGAAGCAGTACTATTTAATCTGCTCAAAGCAATTTTTGTGATACTATTTCTGACTTTAGGTCTTCTNNANNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332031" ref_strand="+" ref_description="SGN-U332031        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | GYF domain-containing protein, contains Pfam profile: PF02213 GYF domain | chr5:17241664-17248583 FORWARD | Aliases: MBD2.15, MBD2_15(evalue: 8e-34, score=140) genbank/nr: gi|15239132|ref|NP_199109.1| expressed protein [Arabidopsis thaliana] gi|9758584|dbj|BAB09197.1| gb|AAC80623.1~gene_id:MBD2.15~similar to unknown protein [Arabidopsis thaliana](evalue: 6e-32, score=140)">
      <seq>ccggggacgtgaagatggtgctacccctactttttctcttggtaggggtcgtgctgtctctggagggagccccatgattaaaggctctcttcatgtgcagtcagtcggggcattctcggagaaagctgaaagtgtttcctctcctatacgatacagtcggttaaaaatgcttgatgtgtacagagggacggacatgcagtcctgtagcaacttttcggatgtgattgtgcaagttccttcacttacacaagatgaacctctggagcctctcgcattatgtgcacccagtcaggaggaattggctatcttgaagggaattgacaagggggatgttctgagtagtggagctccacagactactaaagatggaacattagctcgaaactcaactgaacatactcaaccaaggcgcggcaaactaggtagcagagaagatttatcttttgatgattcaagagaagaaagtaccgacaatgccaaaggtggttatttgaatcacccagaaggttctttcttcgaaaagttacattcttatgggtccagttctaaatctgagactaagcagagtttagagagattttctgatcccaaattaggtgctgtaggtatatgtgtggatatctgtctcttgatgtactatgcagttcatcagggtgcagtaacaaaaacatatcttaaatgttactaaggtttggatgtcctgttaaaattcaaagaaccaaatacataagctagtctgttgcttatacatatctttcaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="61798" stop="60212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61498" g_stop="61198" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61197" i_stop="61096" i_length="102">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61095" g_stop="60975" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="422" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60974" i_stop="60858" i_length="117">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60857" g_stop="60509" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="771" r_length="349" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-U332031" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61498" e_stop="61198"/>
          <exon e_start="61095" e_stop="60975"/>
          <exon e_start="60857" e_stop="60509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGGGACGTGAAGATGGTGCTACCCCTACTTTTTCTCTTGGTAGGGGTCGTGCTGTCTCTGGAGGGAGCCCCATGATTAAAGGCTCTCTTCATGTGCAGTCAGTCGGGGCATTCTCGGAGAAAGCTGAAAGTGTTTCCTCTCCTATACGATACAGTCGGTTAAAAATGCTTGATGTGTACAGAGGGACGGACATGCAGTCCTGTAGCAACTTTTCGGATGTGATTGTGCAAGTTCCTTCACTTACACAAGATGAACCTCTGGAGCCTCTCGCATTATGTGCACCCAGTCAGGAGGAATTGGTAACTTCCAGAGAGACTTGAAACTGATATTACTTGGATTAATTGGATTTTGATCCGATGTTAATTTGTTTAAATGAAGTAACTGCTCAAGTTTATGTTTAGGCTATCTTGAAGGGAATTGACAAGGGGGATGTTCTGAGTAGTGGAGCTCCACAGACTACTAAAGATGGAACATTAGCTCGAAACTCAACTGAACATACTCAACCAAGGCGCGGCAAACTAGGTACTTCTAATTCTTAGATCGGTTTAGGGGATTTCTGAATCTAGATTATATATAGGCTCTCAAATTAGTATGTTTTGTGCTATAATTTTGATTGCCATCATTTCTTCAATTGTTCAGGTAGCAGAGAAGATTTATCTTTTGATGATTCAAGAGAAGAAAGTACCGACAATGCCAAAGGTGGTTATTTGAATCACCCAGAAGGTTCTTTCTTCGAAAAGTTACATTCTTATGGGTCCAGTTCTAAATCTGAGACTAAGCAGAGTTTAGAGAGATTTTCTGATCCCAAATTAGGTGCTGTAGGTATATGTGTGGATATCTGTCTCTTGATGTACTATGCAGTTCATCAGGGTGCAGTAACAAAAACATATCTTAAATGTTACTAAGGTTTGGATGTCCTGTTAAAATTTCAAGAACCAAATACATAAGCTAGTCTGTTGCTTATACATATCTTTCAATAAGCAGAGTT</genome_strand>
        <mrna_strand>CCGGGGACGTGAAGATGGTGCTACCCCTACTTTTTCTCTTGGTAGGGGTCGTGCTGTCTCTGGAGGGAGCCCCATGATTAAAGGCTCTCTTCATGTGCAGTCAGTCGGGGCATTCTCGGAGAAAGCTGAAAGTGTTTCCTCTCCTATACGATACAGTCGGTTAAAAATGCTTGATGTGTACAGAGGGACGGACATGCAGTCCTGTAGCAACTTTTCGGATGTGATTGTGCAAGTTCCTTCACTTACACAAGATGAACCTCTGGAGCCTCTCGCATTATGTGCACCCAGTCAGGAGGAATTG......................................................................................................GCTATCTTGAAGGGAATTGACAAGGGGGATGTTCTGAGTAGTGGAGCTCCACAGACTACTAAAGATGGAACATTAGCTCGAAACTCAACTGAACATACTCAACCAAGGCGCGGCAAACTAG.....................................................................................................................GTAGCAGAGAAGATTTATCTTTTGATGATTCAAGAGAAGAAAGTACCGACAATGCCAAAGGTGGTTATTTGAATCACCCAGAAGGTTCTTTCTTCGAAAAGTTACATTCTTATGGGTCCAGTTCTAAATCTGAGACTAAGCAGAGTTTAGAGAGATTTTCTGATCCCAAATTAGGTGCTGTAGGTATATGTGTGGATATCTGTCTCTTGATGTACTATGCAGTTCATCAGGGTGCAGTAACAAAAACATATCTTAAATGTTACTAAGGTTTGGATGTCCTGTTAAAATTCAAAGAACCAAATACATAAGCTAGTCTGTTGCTTATACATATCTTTCAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329641" ref_strand="+" ref_description="SGN-U329641        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | GYF domain-containing protein, contains Pfam profile: PF02213 GYF domain | chr5:17241664-17248583 FORWARD | Aliases: MBD2.15, MBD2_15(evalue: 1e-48, score=189) genbank/nr: gi|15239132|ref|NP_199109.1| expressed protein [Arabidopsis thaliana] gi|9758584|dbj|BAB09197.1| gb|AAC80623.1~gene_id:MBD2.15~similar to unknown protein [Arabidopsis thaliana](evalue: 9e-47, score=189)">
      <seq>cttcttctccccttcttccctcctctcacaaagcagcataaattagggttttctttgagcgcttattcactttttctccttccgatcatcagccatgggtgacaaaacgcaatttgattctcgccatagtcagatctccaaagatgtgcaagcacccaacgattccattccgctttcaccgcagtggctcctgccaaaaccaggggaaagtaaggctgggatggtcaccggggacaaccatctcaatgcacatccggggtatcctattcgttcagagttagcaaaatttcctgggatgagtgaagatatgcataatcaaaagaagaaagatgtgtttaggccatctgtgctcgatatggaatcaggtcgacgggatcgctggcgtgatgaagaaagggacaccaattctgctgttcgaagggatcgctggagggagggagataaggagattggtgatggccgcaaggtggagcgctggtcggactcctctggcagacatcatggagaagtacgacgtggtccaggtgaaagatggaccgattctggaaatagggatagcaatcacgatcagcgtcgagagagcaaatggaacacgcgctggggacctgatgagaaggaggcagatgctgtgcgtgagaaatggagcaccctagcaaagatgctgaaatgcatcttgagaaggggtcgccaggtcttgcctatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="65771" stop="61325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65471" g_stop="65329" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65328" i_stop="62378" i_length="2951">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62377" g_stop="62289" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="232" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62288" i_stop="62101" i_length="188">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62100" g_stop="61625" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="704" r_length="472" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-U329641" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65471" e_stop="65329"/>
          <exon e_start="62377" e_stop="62289"/>
          <exon e_start="62100" e_stop="61625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTCCCCTTCTTCCCTCCTCTCACAAAGCAGCATAAATTAGGGTTTTCTTTGAGCGCTTATTCACTTTTTCTCCTTCCGATCATCAGCCATGGGTGACAAAACGCAATTTGATTCTCGCCATAGTCAGATCTCCAAAGGTTAAATTTTTTTCAACTTTTTTTCACCTTCGAAATTCTTCAGTAGATGCATTCATTTTTTTTAGCTTTGTGTTTATCTAATCGTAACGAGATGAATGTATGTTTTCGTTGTGAAAATGAAAGATTGTAGCTTTATGTGTGTTCTACTGTTGCCGCCACTGTGGGTTTAGGGTTTCTATATGGTTGATTGAGCTTCGACCTGCTGAACAAACTGTTCAGGAGCATGAAAAATGATGATGTTCGAGTTTTGTGACGGTAGGAGTTATCATTCGGTGATAGAGTTGTGGTTTTTCTGTATGAAGGGATAAATAATGATACAGGGAGATTTGTTTTTTGTGTGTGTTCTGTTTTCTATTGATATTTTTGTACTCAAAGAAACTAGCTTTGCAGTGGGAAATGCTGTTGTTTGAGTTATCTTCTCATTCGGTTATATAGTTTTTTTTTTTGTTTTTGGTTTTGTTTTTGTATGTTTGATGAATAGTACGAGATTTTTGTGTCTGCTTAGTTTTTCCTATCAATACTTTCAATCAAAGAAATAACTTTGCTTGTTTAATTTTTCTTACAGTAGGAAATATCACTCGTTTGTGAAGATGTGATTTTTTTGCATGTTTGACAACTCGGTTATGAAGATGTAATTATTTTGTACATGTTTGATGAATAATACTTTAGGTAGCTTTTTTGTTTGTCTGCTTTTTCTTTTCCCTATCTATATTTATACTAAAGAAACTGATTTTGCAGTAGGAGTGTCGATGTTTGTATGTTTGATGCGTAATACTATAGGGAGATTTATACTCGAAGAAATTGACTTTGCAGTCGGAATGCTGTTGTTTGAGTTTTCTTACTAAAGAAAATATCACTTGGTTAGAAAGTTTTAATTTTTCATATGATGATAATACTGCCGGGAGGTTTTTTGTGCGTCTGTTGTGTTCCTATCGACACTTTTTAACTCAAAAAGATTGATTTTACGGTAGGATTGCTGTTGTTTGAGTTTTCTCACTAAAGAAAATATTCATCGGTTGAAGTTGTGATTTTTTTTGTATGTTTGATGAATAATACTATAGGAAGGTCCTCTTGTGTGTTTGTTTTGTTCGTATCAATGTTTCTATACTCGAAGAAATTGACTTTGCATTAGGAATGCTGTTGTTTGAGTTTTCTTATTATAGAAAGTATCACTTGGCTATAAATTTGTGGTTTTTATGTTTGATGAATAATACTACTTGGAGATTTGTTTTTTTGTGTTTGTAATTTTCCTTCAGCCTAAGCGTTGTCCCTACCACTACTTGTATCCTTGATGAAATTGACCTTTGTGGTGGTAGCTGGTAATGTTGCTTAACAATTGGCTAGTCTCGTGTTTGAGTGTTTTAATGATGTTATTAGTTTTGGTGAGTTGCTCTGTATTGTCCTGTCTTAGGATCGACCGTAGTGTTCGGAACCTGGGAGAGTATGTCTGCCCGTTTATCCTTCTATACTTAAATACCAGGTCTAGTCTGCATTGTGCGAGGATCAAACCTGTGACCTAAGTCATAGATTTGACAACCTTAAAAATTGAACCAAGCCATGAAGGCGAAGACTCCCCTTTCTCTTTTATTACATTTGATCCTCTTATAGCCTCACCTAAGAACAATGTACATGAAAATATACATTGAACATTGTGGAATCATCTCTGAGGACTTACTCATCTTGTTCTACATGTGTGATACCTTTAGCCTTTGTTGAAAGTGATGATTCTGATCTTGTATCACCATATATCCATCTTAACATATGTATTCTTACAGTTATATATCTTACTGCTATTATAGCCTTAGATACTCAATAGTCACTTCCACTATAACATTCCTGGTCTGGAAACCACTTTGCAGCCACTGTTGTTAAAGGCTTGCTCAAAACACATTTAAGCCCTGAAACAAACTTGTGTGCTTTTCTTCACTTAGTTGGTACTTTAGTGCAGTCATCAAGGGGCTTATTCGGTTACATCTTCACGAATGGGCTCAATCTATAAGAGCACAATACTAGACAGTATTATGTATATACTTACATGATACTTCTATTTGCTAAGAACCACACTTTATTTGCACTTTGCTCTTGAACTCCAATATATTTTGGTGATTTTTGCTTTTGACTACTTGTTTGCCTTTCATGATGTCTGTTAATCGACCAATTTAGTGAGTCAAAATTCAAATGTTTTACCGTCAAAGGATAAATTAATGAAGTATGTGAGCAACTAACTACTTAATAATGATAGACATCAGCAATGCGTACAACCATGTTAGTCAAAGCTTCATGTCTTTTGCCAGCTATGGTGCTGATGGTTTGATTCAGAGATGAAATCAGGGGAAATGAGTTTTTGCGTGATTTAATTGGCCTTACTATAAAGGAGAACAGAGCATGTGATTTAGAAGTAAGTGAAGCTGAAATATCTAAGAACAAGCATATTTAAATGCTGAAATAAGCATTTGAAGCCCCTGATTTCAGATGTTATCTAGGAGTATCTTTTGTAGTTAGGAGAGATAAGAAGTGACTATTACTATGTGTAAGCAAAGGTGTCCTGTGTTATTGAAAGGCAAGTTTAATTCATATAAATCTTCTGAATTTTCTGATAAGTTTTCATTGAGCGCCACTTAAATTCAAGGTGGAATTTATTTCTTTAATGTATCATTATTTTTCTCTGTTTTACATGCCTTTGATCTGTTACAAGCCTTCCAAACTTCTTGCTCCTGTTAATAATGTTGATCAACCCTTGGAATTTCTACGGATGGGGAACAGGTTTCGTATAATAACTTATAGGGATTATATGGAACCTCCTATTTTGCTTATTCACATAAGACAGTAAGCAGCAGGGTTTAATTTCTTACCTTATGAAATGGGTGTTTTTATTCCAATATGTGTTTGCTGTAGTGCAAGATTATGTGTTCATATGTAAGTTATTTTTGTTGGCTTTTTGATACATGTAGATGTGCAAGGACCCAACGATTCCATTCCGCTTTCACCGCAGTGGCTCCTGCCAAAACCAGGGGAAAGTAAGGCTGGGATGGTCACCGGGGTATGTTTATTATTGCTTTGGATTTCCTTTTTAATTAAACCCTGTACCATTCTCACTTTTGAGAAACATTTTGGTATTGGGTTAGAAGCAGTTGAGGTTTTCTGCTTAAATTTGTGTAGCGGTTCTTAATAAATTGTTAATTAATAAAATAGCCTGATGTTTGGTCATCTATTGGTGTTTAAATGCAGGACAACCATCTCAATGCACATCCGGGGTATCCTATTCGTTCAGAGTTAGCAAAATTTCCTGGGATGAGTGAAGATATGCATGATAATCAAAAGAAGAAAGATGTGTTTAGGCCATCTGTGCTCGATATGGAATCAGGTCGACGGGATCGCTGGCGTGATGAAGAAAGGGACACCAATTCTGCTGTTCGAAGGGATCGCTGGAGGGAGGGAGATAAGGAGATTGGTGATGGCCGCAAGGTGGAGCGCTGGTCGGACTCCTCTGGCAGACATCATGGAGAAGTACGACGTGGTCCAGGTGAAAGATGGACCGATTCTGGAAATAGGGATAGCAATCACGATCAGCGTCGAGAGAGCAAATGGAACACGCGCTGGGGACCTGATGAGAAGGAGGCAGATGCTGTGCGTGAGAAATGGAGCAACCCTAGCAAAGATGCTGAAATGCATCTTGAGAAGGGGTCGCCAGGTCTTGCCTATCA</genome_strand>
        <mrna_strand>CTTCTTCTCCCCTTCTTCCCTCCTCTCACAAAGCAGCATAAATTAGGGTTTTCTTTGAGCGCTTATTCACTTTTTCTCCTTCCGATCATCAGCCATGGGTGACAAAACGCAATTTGATTCTCGCCATAGTCAGATCTCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCAAGCACCCAACGATTCCATTCCGCTTTCACCGCAGTGGCTCCTGCCAAAACCAGGGGAAAGTAAGGCTGGGATGGTCACCGGG............................................................................................................................................................................................GACAACCATCTCAATGCACATCCGGGGTATCCTATTCGTTCAGAGTTAGCAAAATTTCCTGGGATGAGTGAAGATATGC---ATAATCAAAAGAAGAAAGATGTGTTTAGGCCATCTGTGCTCGATATGGAATCAGGTCGACGGGATCGCTGGCGTGATGAAGAAAGGGACACCAATTCTGCTGTTCGAAGGGATCGCTGGAGGGAGGGAGATAAGGAGATTGGTGATGGCCGCAAGGTGGAGCGCTGGTCGGACTCCTCTGGCAGACATCATGGAGAAGTACGACGTGGTCCAGGTGAAAGATGGACCGATTCTGGAAATAGGGATAGCAATCACGATCAGCGTCGAGAGAGCAAATGGAACACGCGCTGGGGACCTGATGAGAAGGAGGCAGATGCTGTGCGTGAGAAATGGAGC-ACCCTAGCAAAGATGCTGAAATGCATCTTGAGAAGGGGTCGCCAGGTCTTGCCTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341111" ref_strand="+" ref_description="SGN-U341111        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | deoxyuridine 5'-triphosphate nucleotidohydrolase family, contains Pfam profile: PF00692 deoxyuridine 5'-triphosphate nucleotidohydrolase | chr3:17298756-17299937 REVERSE | Aliases: F13I12.6(evalue: 4e-35, score=145) genbank/nr: gi|15232681|ref|NP_190278.1| dUTP pyrophosphatase-related protein [Arabidopsis thaliana] gi|7435915|pir||T12954 dUTP pyrophosphatase homolog T6H20.30 - Arabidopsis thaliana gi|5541665|emb|CAB51171.1| dUTP pyrophosphatase-like protein [Arabidopsis thaliana] gi|13878143|gb|AAK44149.1| putative dUTP pyrophosphatase [Arabidopsis thaliana] gi|17104549|gb|AAL34163.1| putative dUTP pyrophosphatase [Arabidopsis thaliana](evalue: 3e-33, score=145)">
      <seq>aaattttaaacaattttattgttttgtaatctaatttactaattatggcagaggaaaagaagttcacaaattttgcagtccaaaatggatcagttgatatttgtgaagtcataaagagttatataccattcttgaatgtgagaagattatcagaaaatgccactttgcccaaaagaatgttccctcattctgcagcttatgatcttttcagtgcaagggacgttatggtgccagcacgaggcaaggcaaaagttgccactgacttaagcatagacttacctccaggaacctatggtcgtgtcgctgcaagatcaagtttgtcttggcatcgttccattgatgttggaggtggtgtggttgatttaaacaaaaatcctgttttcgtgatactgttcaaccattctgatgttgatttcgaggtgaaagttggcgataacatagcacagctagtcattgagctccatgctatacctgagattgttgaggtttatcaataattataatgtggggtttgaatttgctggagcagctttatgtctgtgtatgttatgcagttgttatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="67318" stop="69763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67618" g_stop="67828" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67829" i_stop="69016" i_length="1188">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69017" g_stop="69108" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="303" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69109" i_stop="69202" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69203" g_stop="69463" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="564" r_length="261" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U341111" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67618" e_stop="67828"/>
          <exon e_start="69017" e_stop="69108"/>
          <exon e_start="69203" e_stop="69463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTAAACAATTTTATTGTTTGGTAATATAATTTACTAATTATGGCAGAGGAAAAGAAGTTCACAAATTTTGCAGTCCAAAATGGATCAGTTGATATTTGTGAAGTCATAAAGAGTTATATACCATTCTTGAATGTGAGAAGATTATCAGAAAATGCCACTTTGCCCAAAAGAATGTTCCCTCATTCTGCAGCTTATGATCTTTTCAGGTAAAAATTACTAGAATTAGTTTCTTGACTATGATTGTTGATCTAATAATAGCAAAATCGATTCGATATACTAAGCTCCTGCTATGGCTAGGATCCACAGAAGGATCGGACCATAAGGGTCTATTGTACTATATGCAGTATTACCCAGTATATATTGAGTATGTAATGTTTTGACGATACAACATGAGTTGTGGTGCGGTGCTGAGACTGGTTCACTCTTAATTAGAGGTATTGAGTTCAAATTCTGTATATGAAAAAAAAAATTGTGATCATCACCCATATGGATCCTACAATCTAGATGTACCAGATTTAGTTGGAGCTCCAATACAAACACCGAACACGTGAACCAAAAAAATGTCTTGATAATGATAAATAAAATGTTTTTGTGCTAAGTTGTGTCTAATATTGGTAAAGTTTTTTTGCTTGATTTCGGAAAATGGTCAGTAAGTGTTGAGAGTTTAATTGTCTAACAAATTATGTTGGTTACGGCAACTGTAATTTTAAATTACTAATTTTGGTGGACTTTACGTGTGACCAACAAATGGTTATTGCTGAAGCAATTCTGATATGGTGTAGACATCAGGTGCAGAGAAGTATTTTACCAACACGAAATGGTTTGTATTTCTATTCATTATTTATAGAGTAGGATCGAACACGAATAGATTATTGAAAAGATGGATGCCTAATTTCGATACATAAAGGAGTCTCTATTAGTGCTAGTTAGATGAACACCGTGATTGATAGGAAGTACTGAGGCTAACTCTTGCCTTCCCCTGATCCGCAATGCGGTCCAGGGGAACATGGGGAGAGATCTATTATGGTTTTTTTTTTCCAGTAACTGATATAAGTAATTGTCATTCTGTCATTTTCTACTCTTGACAGAAAAAAAGATGAGAAAATGGCTTTATATGCCCTTTCATATATAAATATGTTAAAGTTTGGACACTGCTATATTAAAAGTATTATCAGGCACAGTGATTGCTATCATGGATAAGATTTTTATGGTCTCAAACTGTAGCAGAACTGTTTGATAACAAACGCGGATCTAGTAGAAAAGATAGGGATTCAGTCAAGCACGAGCTCAGTAGTTTTGGCTTAAACCTTGTATATGTATTAAAAACTCGTTAAATAAGTACAAATCATTGAGTTAACTATTGTTTGTTTTCGTGATTGTTAATTTGTTCATAGTGCAAGGGACGTTATGGTGCCAGCACGAGGCAAGGCAAAAGTTGCCACTGACTTAAGCATAGACTTACCTCCAGGAACCTATGGTCGTGTCGGTATGCTGCAATACTCTTATCTGAATGTATACATTCTTGTTTTACAATGACATAATCTGTCTTTAGAGATGCTGCTTTTGTTTCATATGTGTAGCTGCAAGATCAAGTTTGTCTTGGCATCGTTCCATTGATGTTGGAGGTGGTGTGGTTGATTTAGACAAAAATCCTGTTTTCGTGATACTGTTCAACCATTCTGATGTTGATTTCGAGGTGAAAGTTGGCGATAACATAGCACAGCTAGTCATTGAGCTCCATGCTATACCTGAGATTGTTGAGGTTTATCAATAATTATAATGTGGGGTTTGAATTTGCTGGAGCAGCTTTATGTCTGTGTATGTTATGCAGTTGTTATGTT</genome_strand>
        <mrna_strand>AAATTTTAAACAATTTTATTGTTTTGTAATCTAATTTACTAATTATGGCAGAGGAAAAGAAGTTCACAAATTTTGCAGTCCAAAATGGATCAGTTGATATTTGTGAAGTCATAAAGAGTTATATACCATTCTTGAATGTGAGAAGATTATCAGAAAATGCCACTTTGCCCAAAAGAATGTTCCCTCATTCTGCAGCTTATGATCTTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGGGACGTTATGGTGCCAGCACGAGGCAAGGCAAAAGTTGCCACTGACTTAAGCATAGACTTACCTCCAGGAACCTATGGTCGTGTCG..............................................................................................CTGCAAGATCAAGTTTGTCTTGGCATCGTTCCATTGATGTTGGAGGTGGTGTGGTTGATTTAAACAAAAATCCTGTTTTCGTGATACTGTTCAACCATTCTGATGTTGATTTCGAGGTGAAAGTTGGCGATAACATAGCACAGCTAGTCATTGAGCTCCATGCTATACCTGAGATTGTTGAGGTTTATCAATAATTATAATGTGGGGTTTGAATTTGCTGGAGCAGCTTTATGTCTGTGTATGTTATGCAGTTGTTATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316660" ref_strand="+" ref_description="SGN-U316660        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT4G34480.1 | Symbol: None | glycosyl hydrolase family 17 protein, similar to glucan endo-1,3-beta-glucosidase precursor SP:P52409 from (Triticum aestivum) | chr4:16481884-16483992 REVERSE | Aliases: T4L20.60, T4L20_60 (evalue: 1e-143, score=506) genbank/nr: gi|3641838|emb|CAA18827.1| putative protein (fragment) [Arabidopsis thaliana] (evalue: 9e-142, score=506)">
      <seq>gaagaatctaaacacctttgaagtttcttttgtatgctctgtttttgtactttgtacttcgaaaagctatctctatttatacttcttctccatcaattatttttctccatcaaattaacatccatggctaatttgcttcacaattcatccttcttccttcttctctgtctcttgcatttcgtactcgtcgcgaaatcgcagtcatttattggtataaattatggccaagttgcggataatttaccggcaccggaggcaacagccaagttactacaatcaacttcaattcaaaaagtccggttatacggatccgacccggcaattatcaaagctttagcaaataccggtatcggaatcatgatcggagtagccaacggtgatattccggcgatggcatcagacccgaactttgctaaaggatggctgagttcaaacgtgcttccgttttatccggcgagtgaaattatcgtaattaacgtcggaaatgaggttatgtcttcaaatgatcagaatctgatgacgaatttgttgccggcgatgcaaaatttacaaaaagccctaaatgatgtttcaattggagggaaaattaaggtctctacggttcattctatggcggttatgaagcaatcggatcctccgtcttctggaagtttcgacccgaatattggggatttgttgaaaggattgttggagttcaataaagctactggttctcctttcgccattaatccttatccgtttttcgcttatcagagtgatcctagacctgatactttagctttttgcttgtttcaacctaatgctggtcgagttgatgctggcaccaagatcaagtacaccaacatgttcgatgctcaggtggatgcaataagagcagcgcttaactctatgggattcaaggaagtagagattgtgattgcggaaacagggtggccttataagggagacagcaatgaagttggtccaagtattgagaatgcaaaggcttacaatggcaatttgattgctcacttgaggtcaatggttggtactcctttgatgcctggcaaatcagtagatacctatctctttgccatatatgatgaggatctcaaaccaggaccaacttctgagcgatccttcggaatttttaagcctgatttaaccatgagttatgatattggactttctaaagccaacaaccaggttccaacaccaaaaactccggtgtctccctcgccaaatgcatccccaaaagctcctgtgtctctctcaccaaatccagcaccaaaagctccggtgactcccacactggttccaacgccaaacaccacagtgactcccccgtcaccaaagacagagaaaagtgtcaaggcaggtgtatcagattctcaatcgcaagcaaatatcaacgtanggatgcttgttttgagccaaatactgtggtaccccatgctgcatatgcgataaatctctttacccaaattcagtaaagaatggtttgactgacagcgtctctctcatcaacgtgtcctagtaagctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="76790" stop="73295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76490" g_stop="76298" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76297" i_stop="76133" i_length="165">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76132" g_stop="75468" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="858" r_length="665" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75467" i_stop="74662" i_length="806">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74661" g_stop="74335" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="859" r_stop="1185" r_length="327" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74334" i_stop="73937" i_length="398">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73936" g_stop="73595" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1186" r_stop="1527" r_length="342" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-U316660" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76490" e_stop="76298"/>
          <exon e_start="76132" e_stop="75468"/>
          <exon e_start="74661" e_stop="74335"/>
          <exon e_start="73936" e_stop="73595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAATCTAAACACCTTTGAAGTTTCTTTTGTATGCTCTGTTTTTGTACTTTGTACTTCAAAAAGCTATCTCTATTTATACTTCTTCTCCGTCAATTATTTTTCACCATCAAATTAACATCCATGGCTAATTTGCTTCACAATTCATCCTTCTTCCTTCTTCTCTGTCTCTTGCATTTCGTACTCGTCGCGAGTAAGCTCTTTTAACTCTTTAAATATGCATTTGTATTGTTATAAATCAACCAAATTACATGTATTCGTTGAGTTCAGTGTAATTTTTCGACGAAGGAGATTCAATTGAACTATAATTTTTTTGTATTCAAATTTGTTTACTAATTATTATATGCTAATATTGCAGAATCGCAGTCATTTATTGGTATAAATTATGGCCAAGTTGCGGATAATTTACCGGCACCGGAGGCAACAGCCAAGTTACTACAATCAACTTCAATTCAAAAAGTCCGGTTATACGGATCCGACCCGGCAATTATCAAAGCTTTAGCAAATACCGGTATCGGAATCATGATCGGAGTAGCCAACGGTGATATTCCGGCGATGGCATCAGACCCGAACTTCGCAAAAGGATGGCTGAGTTCAAACGTGCTTCCGTTTTACCCGGCGAGTGAAATTATCGTAATTAACGTCGGAAATGAGGTTATGTCTTCAAATGATCAGAATCTGATGACGAATTTGTTGCCGGCGATGCAAAATTTACGAAAAGCCCTAAATGATGTTTCAATTGGAGGGAAAATTAAGGTCTCTACGGTTCATTCTATGGCGGTTATGAAGCAATCGGATCCTCCGTCTTCTGGAAGTTTCGACCCGAATATTGGGGATTTGTTGAAAGGATTGTTGGAGTTCAATAAAGCTACTGGTTCTCCTTTCGCCATTAATCCTTATCCGTTTTTCGCTTATCAGAGTGATCCTAGACCTGATACTTTAGCTTTTTGCTTGTTTCAACCTAATGCTGGTCGAGTTGATGCTGGCACCAAGATCAAGTACACCAACATGTTCGATGCTCAGGTAAAGAAAATTTATACTATGCAATTTGCAAGTTATTATACGATCTTCATGTTACTATATCAGGCTTGATATGCTCTGTTTGTTACACTTTCGTCGAGAGTGAAACAGTTTGGGTTAAGTTATGCGTACATTCTACCCTGCTTGTAGGATTACACTGAATATGTTTTTGTGTATCATGTTTGATATGTTGACCTGTTCTACATCAATATAACATAACAGCATATGCAACAGTATAAAGATTGAATTTTTCCCGAAAGACAACTGAGATAAACATGCTTGTTTTATATGAGAAACTTGCAAATGCTTGGAATCTATGTGTTATCTTTGATAAAAATTAAACATAATGAACGAAAATGATTTATATAAATGATACCAACTAGTGTATTCTGAAAGTTTCATTTCTTGTAGCTACATTTCCATTAGATTGGTTATTTTAGTAACTTGATAGTGTAAGAATAAATGTTTGATTTAGATAAACACTATTCTAGAGAACTCCTCTTTATCCTCTTAGATCTAATTTGTAGAGAAAAATGGATATAAATTATTCATATAACTAGTTTAGGATTGAAAATAATTGATTGACTGGCTGTATATCCTCTTAGATCTAATTCTTAGTAAACTTTACATGATGTTTGGAAATAGAAAGTTTACTTTCAAAGAATGAATGGATGAGTTTATAAGATGAACTCAATCTTGATTTCTTAAAACTCTTAGAATTCGAGTGATGTCATTCATCTTTACATGTAGGGGGTATTTTGTAGGTGTTTTTTGAGTTTGAGTAACATAATTAAGTTGGATGTATGCAGGTGGATGCAATAAGAGCAGCGCTTAACGCTATGGGATTCAAGGAAGTAGAGATTGTGATTGCGGAAACAGGGTGGCCTTATAAGGGAGACAGCAATGAAGTTGGTCCAAGTATTGAGAATGCAAAGGCTTACAATGGCAATTTGATTGCTCACTTGAGGTCAATGGTTGGTACTCCTTTGATGCCTGGCAAATCAGTAGATACCTATCTCTTTGCCATATATGATGAGGATCTCAAACCAGGACCAACTTCTGAGCGATCCTTCGGACTTTTTAAGCCTGATTTAACCATGAGTTATGATATTGGACTTTCTAAAGCCAACAACCAGGTAAGAGAATCACTACAAGAACTCAATTACCTTGTTATTTAATATGCTTGTAAAATATGCATTGCACTGGTCTGTAGTAGGTGTGAAGTTAAATGCGGACAAGGTAGACCTAAAATCACATGAAATGTAATTGACTATAAGCCATGCCAATTAGTTGCGGATTAAGTTTCATATTAATATGTTATTCTAGGTCCAACGTTTTCTAGGAATCTATTTGTCAATATAAGATATAAAGAACTTCTAGTAATTTAATTTTGGACTGAAAGGCCACCTTATAGAGCGACATAGATAGTGAAGATTTATGTAGCTACCTTGTTTTCAATAGACGCGTAACTGTTATAATTTCTTGGAAATTTCGTGATTATTAAGGTCTGAGATGAGTTTTTGTGTTTTCGAAGGTTCCAACACCAAAAACTCCGGTGTCTCCCTCGCCAAATGCATCCCCAAAAGCTCCTGTGTCTCTCTCACCAAATCCAGCACCAAAAGCTCCGGTGACTCCCACACTGGTTCCAACGCCAAACACCACAGTGACTCCCCCGTCACCAAAGACAGAGAAAAGTGTCAAGGCAGGTGTATCAGATTCTCAATCGCAAGCAAATATCAACGTAGGGATGCTTGTTTTGAGCCAAATACTGTGGTACCCCATGCTGCATATGCGATAAATCTCTTTACCAAAATTCAGTAAAGAATGTTTGAACTGACAGCATCTCTCTCATCAACGTGTCCTAGTAAGCTGCTGA</genome_strand>
        <mrna_strand>GAAGAATCTAAACACCTTTGAAGTTTCTTTTGTATGCTCTGTTTTTGTACTTTGTACTTCGAAAAGCTATCTCTATTTATACTTCTTCTCCATCAATTATTTTTCTCCATCAAATTAACATCCATGGCTAATTTGCTTCACAATTCATCCTTCTTCCTTCTTCTCTGTCTCTTGCATTTCGTACTCGTCGCGA.....................................................................................................................................................................AATCGCAGTCATTTATTGGTATAAATTATGGCCAAGTTGCGGATAATTTACCGGCACCGGAGGCAACAGCCAAGTTACTACAATCAACTTCAATTCAAAAAGTCCGGTTATACGGATCCGACCCGGCAATTATCAAAGCTTTAGCAAATACCGGTATCGGAATCATGATCGGAGTAGCCAACGGTGATATTCCGGCGATGGCATCAGACCCGAACTTTGCTAAAGGATGGCTGAGTTCAAACGTGCTTCCGTTTTATCCGGCGAGTGAAATTATCGTAATTAACGTCGGAAATGAGGTTATGTCTTCAAATGATCAGAATCTGATGACGAATTTGTTGCCGGCGATGCAAAATTTACAAAAAGCCCTAAATGATGTTTCAATTGGAGGGAAAATTAAGGTCTCTACGGTTCATTCTATGGCGGTTATGAAGCAATCGGATCCTCCGTCTTCTGGAAGTTTCGACCCGAATATTGGGGATTTGTTGAAAGGATTGTTGGAGTTCAATAAAGCTACTGGTTCTCCTTTCGCCATTAATCCTTATCCGTTTTTCGCTTATCAGAGTGATCCTAGACCTGATACTTTAGCTTTTTGCTTGTTTCAACCTAATGCTGGTCGAGTTGATGCTGGCACCAAGATCAAGTACACCAACATGTTCGATGCTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGCAATAAGAGCAGCGCTTAACTCTATGGGATTCAAGGAAGTAGAGATTGTGATTGCGGAAACAGGGTGGCCTTATAAGGGAGACAGCAATGAAGTTGGTCCAAGTATTGAGAATGCAAAGGCTTACAATGGCAATTTGATTGCTCACTTGAGGTCAATGGTTGGTACTCCTTTGATGCCTGGCAAATCAGTAGATACCTATCTCTTTGCCATATATGATGAGGATCTCAAACCAGGACCAACTTCTGAGCGATCCTTCGGAATTTTTAAGCCTGATTTAACCATGAGTTATGATATTGGACTTTCTAAAGCCAACAACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAACACCAAAAACTCCGGTGTCTCCCTCGCCAAATGCATCCCCAAAAGCTCCTGTGTCTCTCTCACCAAATCCAGCACCAAAAGCTCCGGTGACTCCCACACTGGTTCCAACGCCAAACACCACAGTGACTCCCCCGTCACCAAAGACAGAGAAAAGTGTCAAGGCAGGTGTATCAGATTCTCAATCGCAAGCAAATATCAACGTANGGATGCTTGTTTTGAGCCAAATACTGTGGTACCCCATGCTGCATATGCGATAAATCTCTTTACCCAAATTCAGTAAAGAATGGTTTGACTGACAGCGTCTCTCTCATCAACGTGTCCTAGTAAGCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327831" ref_strand="+" ref_description="SGN-U327831        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>tgccatccacagataggatggatcatcataacaaaattcatagaactgagacctctccgaaaatagatgagttatccccaactttgcaagacacagagctgcagaaggatgacaaaagctgctctggtggagcagaacagtcaactgaaagccagacaagagaagcaaatgcagacaacataggatctaatgagccagatgtgagcatggagatactcgacttccaaaccgagctacttggtaaaatagagaacagtacctcgtgcaacacaattatggaaaaggaatgtgacaacctgacagattctggaactgtgatttcaaatgaaaatcatcaagaaaaaacgccacaagaagttgaaatatccatggaccagaaagtcagagaagataggccaaagatattacaagctacagaccaatttaatgggattcatcaagaagcctcacagaacagtaaacttttctatgatgaacaaaataaaagttttcctgccaaatttacaggaaaaggaggtataaaaatctccaatgctgttagaaatgatcaagagacagctctcgcattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="82640" stop="81012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82340" g_stop="82009" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82008" i_stop="81878" i_length="131">
            <donor d_prob="0.707" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81877" g_stop="81781" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="429" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81780" i_stop="81546" i_length="235">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81545" g_stop="81468" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="507" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81467" i_stop="81376" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81375" g_stop="81312" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="571" r_length="64" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-U327831" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82340" e_stop="82009"/>
          <exon e_start="81877" e_stop="81781"/>
          <exon e_start="81545" e_stop="81468"/>
          <exon e_start="81375" e_stop="81312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCATCCACAGATAGGATGGATCATCATAACAAAATTCATAGAACTGAGACCTCTCCGAAAATAGATGAGTTATCCCCAACTTTGCAAGACACAGAGCTGCAGAAGGATGACAAAAGCTGCTCTGGTGGAGCAGAACAGTCAACTGAAAGCCAGACAAGAGAAGCAAATGCAGACAACATAGGATCTAATGAGCCAGATGTGAGCATGGAGATACTCGACTTCCAAACCGAGCTACTTGGTAAAATAGAGAACAGTACCTCGTGCAACACAATTATGGAAAAGGAATGTGACAACCTGACAGATTCTGGAACTGTGATTTCAAATGAAAATGTAAGTTCATCTGTGAGAAGAAAGCTAAACTTAAGTGCGCCGTTGGCATGCTTTAATGATTCAGAGTAGTTTTATATTTAGAAACCTACATATGAAATACCTTCATAACATGCTTTGTTGGATTCCTGCAGCATCAAGAAAAAACGCCACAAGAAGTTGAAATATCCATGGACCAGAAAGTCAGAGAAGATAGGCCAAAGATATTACAAGCTACAGACCAATTTAATGGTATGTCATATCTTCTTATATATAATAAATGTAGCATTCTTAACTTGCAAGGCTTGATAGCAGTCCTATAATCTCTATATCCCAATGATTAGCGCCTTTCAAACTCCGACCACAATAATCAAATATCATTGACACTATATGAAATATTATTAGTATTCAGCCTTCGTTATATGTTTCACATGAGATGAAACATAGCTCATATACTGCAAACTGGTTCTAACGATCAATGTTGCAGGGATTCATCAAGAAGCCTCACAGAACAGTAAACTTTTCTATGATGAACAAAATAAAAGTTTTCCTGCCAAATTTACAGGTACTGATATAAAAATCTTATTTTCTGTTCATTTACATGTAAAAAGATGAACGTCATAGACGAAGTTTCTCACCCCTCTGATCATATTGCAGGAAAAGGAGGTATAAAAATCTCCAATGTTGTTAGAAATGATCAAGAAACAGCTCTCACATTAGT</genome_strand>
        <mrna_strand>TGCCATCCACAGATAGGATGGATCATCATAACAAAATTCATAGAACTGAGACCTCTCCGAAAATAGATGAGTTATCCCCAACTTTGCAAGACACAGAGCTGCAGAAGGATGACAAAAGCTGCTCTGGTGGAGCAGAACAGTCAACTGAAAGCCAGACAAGAGAAGCAAATGCAGACAACATAGGATCTAATGAGCCAGATGTGAGCATGGAGATACTCGACTTCCAAACCGAGCTACTTGGTAAAATAGAGAACAGTACCTCGTGCAACACAATTATGGAAAAGGAATGTGACAACCTGACAGATTCTGGAACTGTGATTTCAAATGAAAAT...................................................................................................................................CATCAAGAAAAAACGCCACAAGAAGTTGAAATATCCATGGACCAGAAAGTCAGAGAAGATAGGCCAAAGATATTACAAGCTACAGACCAATTTAATG...........................................................................................................................................................................................................................................GGATTCATCAAGAAGCCTCACAGAACAGTAAACTTTTCTATGATGAACAAAATAAAAGTTTTCCTGCCAAATTTACAG............................................................................................GAAAAGGAGGTATAAAAATCTCCAATGCTGTTAGAAATGATCAAGAGACAGCTCTCGCATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312428" ref_strand="+" ref_description="SGN-U312428        Tomato 200607 #1 [369 ESTs aligned]">
      <seq>ggcgattggcggccaatcggccgaattgataccttttccctctacgcctatcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtacataatcaattttacattatcagcatccatatattaattacttttcctctataatcacctacacagtaatggtaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89832" stop="93232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90135" g_stop="90533" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="427" r_length="399" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="92466" g_length="1832"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="2258" r_length="1831" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92580" g_stop="92940" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="2259" r_stop="2619" r_length="361" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U312428" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>2592</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90135" e_stop="90533"/>
          <exon e_start="90635" e_stop="92466"/>
          <exon e_start="92580" e_stop="92940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCTTTTCCCTCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATT</genome_strand>
        <mrna_strand>ATACCTTTTCCCTCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312434" ref_strand="+" ref_description="SGN-U312434        Tomato 200607 #1 [5 ESTs aligned]">
      <seq>tacgcctatttttttttctcaatctttctaagtagttatcttctccaaattttatgatcagatctggaatcgtgcttgatctacgtttggatatggatttgccggtttctgtccggaccgcgggttttgtccggaccggcgactgacgccgatggatggatggtcgatatttgtttgttctgngccgcggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcaaccgttgtgcgcaagagatttattggtttgaagatagatgcaaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcgaaggttgaatcatagaacgttatggtgaatccaaggttatgatggtttaattttgatgtttataattatttaaatgttttatttgcttaagtttttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttaaattaattccgtgtactgggtagatcttgtatccgagtggatgatggaaaattttgcaacttagaacttggggatttctttgtttctgattcatgctgtctggagtcccaccttgtgatgggaagtgttgctctgttgatgcatggatgttttaccttgtgcgttcaagttatgtttgtgctgttgctgctgttgaagttgaagatctgaagatccgtttgctgctgttggaagttaatcatttgggtcacactgttggtttgttcctgttacatttggaaacactcggaacttgtgacgcatgaacttgttgctgttgcttgtttggatctgtggtgtgcatcagtaacacagtatggtagcctgttcattgttcctctgatgtactgcactcaaagaacttgtagcagataatctacttctcccctggggcttttattaagcataatataattctactcttgagctccgattgtttctactggactggaatgtaaagcctgttttcatgatatatgacaattcacagttctcatgaagacaatgtggtgcatttaattttcctcttttgaagatgctgatttgccgtactctaatggtttgcagttccatttatttaatattgaagttattatttttggttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89849" stop="93055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90149" g_stop="90533" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="91183" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="913" r_length="549" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91184" i_stop="91660" i_length="477">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91661" g_stop="92466" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="914" r_stop="1727" r_length="814" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="0.79"/>
            <acceptor a_prob="0.992" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92580" g_stop="92760" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1728" r_stop="1909" r_length="182" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1910" polyA_stop="1920"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U312434" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>1921</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90149" e_stop="90533"/>
          <exon e_start="90635" e_stop="91183"/>
          <exon e_start="91661" e_stop="92466"/>
          <exon e_start="92580" e_stop="92760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTG-GCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAA-TTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTC--AACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAA-AT-TTTCTCCCTTGGGG-TTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGG-ATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTAC-CTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACT</genome_strand>
        <mrna_strand>TACGCCTAT-TT-TT-TTTTCT-CA-ATCT-TTCTAAGTAG-TTATCTTCTCCAAATTTTATGATCAGATCTG-G-A-ATCG-TGCTTGATCTACG-TTTGGATATGGATTTGCCG-GTTTCTGT-CCGGACCG-CG-GGTTTTGT-CCGGACCGGCGACTGAC--GCCG-ATGGATGGATGG-TCGATATTTGTTTGTTCTGNGCCG-CGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG.....................................................................................................GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTAAATTAATTCCGTGTACTGGGTAGATCTTGTATCCGAGTGGATGATGGAAAATTTTGCAACTTAGAACTTGGGGATTTCTTTGTTTCTGATTCATGCTGTCTGGAGTCCCACCTTGTGATGGGAAGTGTTGCTCTGTTGATGCATGGATGTTTTACCTTGTGCGTTCAAGTTATGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATCCGTTTGCTGCTGTTGGAAGTT-AATCATTTGGGTCACACTGTTGGTTTGTTCCTGTTACATTTGGAAACACTCGGAACTTGTGACGCATGAACTTGTTGCTGTTGCTTGTTTGGATCTGTGGTGTGCATCAGTAACACAGTATGGTAGCCTGTTCATTGTTCCTCTGATGTACTGCACTCAAAGAACTTGTAGCAGATAATCTACTTCTCCCCTGGGGCTTTTATTAAGCATAATATAATTCTACTCTTGAG.................................................................................................................CTCCGATTGTTTCTACTGGACTGGAATGTAAAGCCTGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACAATGTGGTGCATTTAATTT-TCCTCTTTTGAAGATGCTGATTTGCCGTACTCTAATGGTTTGCAGTTCCATTTATTTAATATTGAAGTTATTATTTTTGGTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333559" ref_strand="+" ref_description="SGN-U333559        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>atcttcttcttttctccagatctcttctaagtagtttatcttctccaaattttatgatcagatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggttcgatatttgtttgttctggccgacggttgacgaagagatggtggatctgatgtgtttgtgtgttcgtttgggatagatgagcatagtcgagcatcagatctgttcggtcttaatagatttgtggagattggagaagaagtttcagcaaccttgatgttatcatcgcgagggttcgacctttgagcacactacacttattgggtcgaagatcgttgctaggactatcggttttgttcgttgttgtcatagatcaagctcttttgaccggttatcatcggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89856" stop="91014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90156" g_stop="90533" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101">
            <donor d_prob="0.545" d_score="0.84"/>
            <acceptor a_prob="0.985" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90635" g_stop="90714" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="458" r_length="80" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U333559" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90156" e_stop="90533"/>
          <exon e_start="90635" e_stop="90714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTGGTGAGCAACATAAGCTTTTTGGTGTTTTTGTTTGCTTGGAGATGATGAATCATGCAAATTACCTCTGTTGAAAACATGCTAAGTCTTTCTACATGTTGCAGGTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCG</genome_strand>
        <mrna_strand>ATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCGACCTTTGAGCACACTACACTTATTG.....................................................................................................GGTCGAAGATCGTTGCTAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333558" ref_strand="+" ref_description="SGN-U333558        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gcacgagcttttctgcagatctcttttatgtagtttatcttctgcatattgtgtgatcatatctgtgtagatcgttgcttgatctacgttttggatatggatttgccgtgtttctgtaccggaccgccgtggttttgtaccggaccggcgactgacgggccgtatggatggatggtttgatatttgtttgttctggccgactggttgacgaatagatggtggatctgatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="89864" stop="90687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90157" g_stop="90387" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U333558" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90157" e_stop="90387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGAC-GGTTGACGAAGAGATGGTGGATCTGATGTG</genome_strand>
        <mrna_strand>GCACGAGCTTTTCTGCAGATCTCTTTTATGTAGTTTATCTTCTGCATATTGTGTGATCATATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGTGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTTGATATTTGTTTGTTCTGGCCGACTGGTTGACGAATAGATGGTGGATCTGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312429" ref_strand="+" ref_description="SGN-U312429        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>tttatcgatgcatgcacatgtacgagagataaaagaatgagttgaggttgtgcgaggtttgagaggaaaaaagtgaggtgtttactgttttatgttgccaggcctttgccatgttgggtgcgctcgcatggcaggccaaaagtacctaataaaactatattttttggtgttggagaggagaggcacagggttttgcctggatctcctctctgtgtgtgtcgcctcttttattttttcatgttctttccctgctcctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttgaggttttattaagcatattatgatgctactcatgaggtaaatcatctgtcttatagaagatattcttctttttctgtctgttaatattttgctgaattcgtgtatttttgtattttatttactctattggtatttttccctgtctgcagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90508" stop="93060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90808" g_stop="91183" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91184" i_stop="92031" i_length="848">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.183" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92032" g_stop="92760" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="1108" r_length="732" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U312429" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1105</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90808" e_stop="91183"/>
          <exon e_start="92032" e_stop="92760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACT</genome_strand>
        <mrna_strand>TTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGAGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTTTTTCTGTCTGTTAATATTTTGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312435" ref_strand="+" ref_description="SGN-U312435        Tomato 200607 #1 [91 ESTs aligned]">
      <seq>gtgtgttgcatcctccttatattttcatgctctttccctgctcctgcgtctaccaatctcgcaccgatccagtggttacttgttttgtatggacaagttattcgtgttgaattttgcttaatatggcgatggacaaagcaacgtttctactgctgcacttatcagaggtacataatcaattttacattatcagcatccatgtattaattagttttcctctataatcacctagacagtaatgataatatctccaatcaatagttttagaattattcaacaagccgtacaaagcttagttttttaaatgcagtcacatacagctgattattgaagtagctttaaactatttcataaaatattttggatggtctcccctctcaactctattctagatatccaatttaaccatgaaatttgataacttagggttcatgtacttcatatttttcaagaacgaatgtatttcaaaaacaaaaatattgacaccttttaagaaagtattaacaactataagaccaatctttcggtgacgcatcaactttaagttgcgtttagcttaagcctcgtgctaacaattatttatccgtttagctatcaaacttgaactattatttgaatattagtagtttttttcaggtgaacaagattcacatctaaaatgtcatataaaaagccatctaaaaataagttctgcgtaagaaccattagcaaggcataaccaaggcttcaaccatatgtctcttcttgtcgatggctgttctttttcatttgttctcatggctcttttacttggaaaatattgccgtctcttcgttgtggatgagttaattccttttaagttaattctatggtatgagtatttgtggagtgccacttcgtttcttttaaatcgtgatgtaaatgtttcaatctatggagatgccgattatggctccccttttgtgtagccttctgggaagtgtattttaggcaggtttgggattttgactgttgaattaattccgtgtactgggtagatcttgtatctgattggatgatggaaaatttgcaacttagaacttgggaatatctttgtttctgattcatgctgtctggggtcccaccttgtggtggggagtgttgctcagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcagttccatttattcaatattgaagttattatttttggttttactgtgagtttcagttttcgctctatttttttatttatttctagagtatgtccgtgtttgccggagatgttgtcccatggaagtatttgttgagattagcatggggtgtgtcctttggcgtaaaaggttttacgtcattttagtattataatatactatcgagttattgtggttacgattattttagatttttatacctttttggggactgtaacatgaaagttgtactcactcacgagtttgatcaaatacttttttcttaaaaaaaaaaagttcgttattataactctgaaagtttgttttaaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90735" stop="93363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91017" g_stop="92466" g_length="1450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1454" r_length="1454" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92580" g_stop="93062" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1455" r_stop="1941" r_length="487" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1942" polyA_stop="1958"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U312435" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>1933</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91017" e_stop="92466"/>
          <exon e_start="92580" e_stop="93062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAA--TTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTA-TGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTA---CATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCG-TTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAA-C-TATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGG--AA-A-T----T-ACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTT----AAAGAGTGTTCGTTATTATAACTCTGAAAGTTTGTTTTAAACCA</genome_strand>
        <mrna_strand>GTGTGT-TGCATCCTCCT-TATATTTTCATGCTCTTTCCCTGCTCCTGCGTCTACCAATCTCGCACCGATCCAGTGGTTACTTGTTTTGTATGGACAAGTTATTCGTGTTGAATTTTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTTATCAGAGGTACATAATCAATTTTACATTATCAGCATCCATGTATTAATTAGTTTTCCTCTATAATCACCTAGACAGTAATGATAATATCTCCAATCAATAGTTTTAGAATTATTCAACAAGCCGTACAAAGCTTAGTTTTTTAAATGCAGTCACATACAGCTGATTATTGAAGTAGCTTTAAACTATTTCATAAAATATTTTGGATGGTCTCCCCTCTCAACTCTATTCTAGATATCCAATTTAACCATGAAATTTGATAACTTAGGGTTCATGTACTTCATATTTTTCAAGAACGAATGTATTTCAAAAACAAAAATATTGACACCTTTTAAGAAAGTATTAACAACTATAAGACCAA----T----C---T-TTCGGTGACGCATCAACTTTAAGTTGCGTTTAGCTTAAGCCTCGTGCTAACAATTATTTATCCGTTTAGCTATCAAACTTGAACTATTATTTGAATATTAGTA-GTTTTTTTCAGGTGAACAAGATTCACATCT-AAA-ATGTCATATAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTAGCAAGGCATAACCAAGGCTTCAACCATATGTCTCTTCTTGTCGATGGCTGTTCTTTTTCATTTGTTCTCATGGCTCTTTTACTTGGAAAATATTGCCGTCTCTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATGGTATGAGTATTTGTGGAGTGCCACTTCGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAAAAAAAAAGTTCGTTATTATAACTCTGAAAGTTTGTTTTAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312432" ref_strand="+" ref_description="SGN-U312432        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>cctgcgtccaacaatctcgcaccgatccagtggttacttgttttttatggacaagttattcgtgttgaattgcttaatatggcgatggacaaagcaacgtttctactgctgcactcctcagagttgatgcatggatgttttacctggtgcgttctagttttgtttgtgctgttgctgctgttgaagttgaagacctgaagatgcgtttgctgctgttggaagttaaatcattttggtcacactgttgggttgttcctgttacatttggaaacactcaacttttaactcctaaacttgttgctgttgcttgtctgaatctgtcgtgtgcatcattaacacagtatggtagcctggtcattcttctcctgatatactgcactcaaagaacttgtagcagataaattttctcccttggggttttattaagcatattatgatgctactcatgagttccgattgtttctactagagtggatgtaaggcatgttttcatgatatatgacaattcacagttctcatgaagaccatgtggtgcatttaatttctcctcttttgaagatgctgatttgccgtacctaatggtttgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90761" stop="93018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91061" g_stop="91183" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91184" i_stop="92142" i_length="959">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92143" g_stop="92466" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="450" r_length="327" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92580" g_stop="92718" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="589" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U312432" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91061" e_stop="91183"/>
          <exon e_start="92143" e_stop="92466"/>
          <exon e_start="92580" e_stop="92718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAG---TTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAG</genome_strand>
        <mrna_strand>CCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGACCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGAACTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG.................................................................................................................TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGTGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333555" ref_strand="+" ref_description="SGN-U333555        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ctgctgcactcctcagaggtacataatcaattttacattatcagcatacacgtcgctgaatacttttcctctattatcacctacacaggaatgttaatatctctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagacttttatatgtagtcacatacagctgattattgaagcagcttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90866" stop="91800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91166" g_stop="91500" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U333555" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91166" e_stop="91500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATAT-ATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCT</genome_strand>
        <mrna_strand>CTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATACACGTCGCTGAATACTTTTCCTCTATTATCACCTACACAGGAATGTTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGACTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGC-TTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333552" ref_strand="+" ref_description="SGN-U333552        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tctaatcaatagttgtagaatcattcaacaagccgcacaaagcttagtcttttatatgtagtcacatacagctgattattgaagcagctttaaactatttcataaaatattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatattttcaggtgaacaagattcgcatctaaaatatgtcatgtaaaaagccatctaaaaataagttctgcgtaagaaccattgtcatggcataaccaaggcttcaactatgtctcttcttgttgatggctgttctttttcatttgttctcacggctctttcacttggaaattacttcgttgtggatgagttaattccttttaagttaattctatagtaggagtatttgtggagagccactttgtttcttttaaatcgtgatgtaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="90966" stop="92218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91266" g_stop="91463" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91464" i_stop="91660" i_length="197">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91661" g_stop="91918" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="455" r_length="258" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U333552" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91266" e_stop="91463"/>
          <exon e_start="91661" e_stop="91918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATG</genome_strand>
        <mrna_strand>TCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATTTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATA-TTTTCAG.....................................................................................................................................................................................................GTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTATTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333554" ref_strand="+" ref_description="SGN-U333554        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aaagcttagttttttatatctagtcacatacagctgattagggaagtttctttaaactattgcatccactattttggctggtctcccctctcaactctatgtttatatccaatataaccatgatttttgataacttagggttcatgtacatatttttcaagaacgaatgtatttcaaaaacgaaaatattgacaccttttaagtattaacaactaaaagaccaatcgttagaccaattattctgtgacgcatcaactttaagttgcgttagcttaagcctcgtgctagtaattatttagccgtctagctgtcaaacttgaactattatttgaatattagtaggtttttttcaggtgaacaagattcgcatctaaaatatgtcatgttaaaagccatctaaaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="91004" stop="92013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91304" g_stop="91713" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U333554" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91304" e_stop="91713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAA</genome_strand>
        <mrna_strand>AAAGCTTAGTTTTTTATATCTAGTCACATACAGCTGATTAGGGAAGTTTCTTTAAACTATTGCATCCACTATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACC-TTT---TAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTTAAAAGCCATCTAAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319222" ref_strand="+" ref_description="SGN-U319222        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein, similar to polyphosphoinositide binding protein Ssh1p (GI:2739044) {Glycine max}; similar to SEC14 cytosolic factor (Phosphatidylinositol/phosphatidylcholine transfer protein) (PI/PCTP) (SP:P24859) (Kluyveromyces lactis) and to SEC14 cytosolic factor (SP:P53989) (Candida glabrata) | chr1:28217472-28220042 FORWARD | Aliases: F22H5.20, F22H5_20(evalue: 8e-121, score=430) genbank/nr: transporter-like(evalue: 2e-155, score=551)">
      <seq>tgctcctcagatatagagagagaaagaagtgcgtgagtgtatgaattaatttttcttccatttattttatttttttggcagaatttgcatgacattctgttgaaaaaaggacctcaagctcacttttttgtgcttcttcttcttcttccgtttctcgtcaggtaaagctcaagtaagagacaaattatagtagcattcaccatgtttcgtcgcaagaaccactctaatagtgaacaggggggtgaggaccagcagcacaaggttaaggagcttagggcttccctggggcaactctcaggccgcagtgcacagttctgcactgatgcatgtttaaaaaggtttttggaggcacggaattggaatgtagataaagcaaagaagatgttggaggagacgcttaaatggagattatcgtttaaacctgaagaaattcgctggaatgaagtagcgaaagaaggtgagactgggaaggtgtttaaagcaaattttcatgaccgccatggcaggacagtcctaatattacggccaggaatgcagaacacggcagcactagacaaccagatgaagcatttggtgtatctaatcgagaatgccatttttaatctgccagaaggtcaagaacagatggcctggttaattgacttcactggatggtctataaccaataatgttcctgtaaaatctgctcgcgagaccatcaatattttgcaaaaccactaccctgagagactcgctgcagcacttctgtacaatccaccgcgactttttgaaacattttggaggattgtcaaatactttatggatcccaaaacatttcaaaaggtcaagtttgtgtatccaaagaataaggatagcgcggaactgatgaagtcgtacttcgacgttgacaatcttcctactgagtttggaggaacagctacactgaaatatgatcacgaggagttctcaaggcaaatggctcaagatgatgtgaaggccgccaagttttggggttcggacaaacatccccctggtcctggtggtaatggtaattactctgcagtagaagttgctccagaaccttaatcacttactctataagccactgcctgagcttaaatgattgcaacactgacaaagctcagtctcttatatgcctaactaagttcaaataaataatgaggaatgtaagaatcatgttcacagacattagcttatttcagatgaactttaattgtaggttgtactttgatttatgcagaaatcaaaaagcgctaaatatttaagcctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="102866" stop="108399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103166" g_stop="103329" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103330" i_stop="105425" i_length="2096">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105426" g_stop="105525" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="261" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105526" i_stop="106038" i_length="513">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106039" g_stop="106215" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="438" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106216" i_stop="106833" i_length="618">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106834" g_stop="106932" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="537" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106933" i_stop="107034" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107035" g_stop="107280" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="783" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107281" i_stop="107611" i_length="331">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107612" g_stop="108099" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="1271" r_length="488" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1272" polyA_stop="1311"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U319222" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1274</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103166" e_stop="103329"/>
          <exon e_start="105426" e_stop="105525"/>
          <exon e_start="106039" e_stop="106215"/>
          <exon e_start="106834" e_stop="106932"/>
          <exon e_start="107035" e_stop="107280"/>
          <exon e_start="107612" e_stop="108099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCCTCAGATATAGAGAGAGAAAGAAGTGCGTGAGTGTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCATGACATTCTGTTGAAAAGAGGACCTCAAGCTCACTTTTTTGTGCTTCTTCTTCTTCTTCTTCCGTTTCTCGTCAGGTATGATCAGAGTCGGTTGCCGCCGACGTGGGTGGCGGAGGGGTTTACTTGCCTTTTTTTTTTTACTTTTGTTTATGAATTTGGGGTTTTGTTTGTTTTTTGCTCTGTTTATGTGTTTTTCTGTGAGTTTGGTTTGGTTTATTTGCTGCGAGTGGTGTAGGTTTGACATGTTTCTGATTTTACTTTTTTTGGTAGTTTTTGTAGTTTTTTAATTATTGTTTTAGCTATTATAGTGGAGTTGTTGGATCTGTTGATTGATTTTTCTATGGTATGGTGATTTTTTTTTTTAATTTTTATTGACTAATTTGTTTGTGTTAATCTAATGCTGAATATTAATAGTACTTGATTTCAGATTTTTGTCATAACTACTTTGACTTGCTGTAATTTGACTGAGTATTTATCGTAAACAAGCTCTCTACCTTCGCGCGTAGGCTGGAAGGAAGGGCTAAGGTCTAGGTACACCACTTTTGAAATGTCAATGGAGAATTTGTTGTTGTTGTTTTTGTTATGTTGAATTACTCTCGAATTAGGCTGAATAGCTGAAATGAACTTGGATAGAGCTGAATATATACAGATGATTCTGTAGTTGATTGAGTGGTAGCAGATTATTTTGTACAGGGTGTGTTAAATTGCGAAAAGATTGTTCTTATTCATGAATTATCTCTCTATTGTTGGTAGATCATGAGTCAAGCAGCAGGAGGCTACCCCTGCAAATGTTGTGTTTGGTGGTTTTTGTTGGTCTACCACATAACTTATACTTCTTCCTGACTTTGACCTTAGGATAGTTCTTTTTCTTTCTAAATGATGAATAGTGAAAATTTGTTTTGGGAAGGGTTATACTCAAAAGGATGAATTTTGCACTTGAACAAAAAAACAAAGCGTAGTAACTTATTTTTCTGCGATTTGCAGTTTATCTAGAAGCCATGTTTTGATTAGAGGATATCAAAGAAGTTTGCAATAGTGTTTGTTTATCAAAAAGAGTTGTGAGTTCCTTTGTATTTGAATTATTACTTGATAAAAATAGTTCCTTTTGTGCTTGAAAGCAAGTGAACACAAGGTGGTTCTACAACAACATAGGCTAGAAGTATGGAATGCATGACTCCTATTTACCCTACGTTAACTAATGAATGTGATATTCAAAGTTTCATTTTTTGTGTGTGATATACCTTGCCACCTCAAGTCTACTATGCCTTAAATTAGTAGAAGTCTTAAGCATGTTATTATTTGAGACCTTGTTGCATTCTTGGAAAACATGGCAAACTGCAAACTACAAGTTTTATAATGCAAGCTTGTGTTCTTGCAGTGAAATTGATCCCTTTCTGGTGGGGAGTCTTGGTGGTTGAATGCTATATGATATGTCAATTTTTTTAATAGATAATGTGAATATTTTGTGTTTGTGCTGCTCTGATTCTTACACTTTCACGAATTAGCTGGTAACTTCTGATAAAAAAGATCCCTAGTGAAAGATGCATAGAGTATTCTTCATTTACTTGTTAGGATCTCGTCCCAAATCTATTGCCAAGTTGTGTTCTAAATACAGACTACTACCTAATTGCCTATCATATCGTGAGAATCTGCACTTCACTTTTATACTTGCTGATGCATATGATTCTAGAAAGTGGACAACTTGATAAAATGATGTGTTTAGTGACAATACCTGATGGGGGTTTCTGAACCTGTAATTAATCAGTCGCCTTTAGCAATTTACTTTAGGCAAGTTTTCTACCTCTCAATTTCGTCATCCTATTTGACAAAACATATAAATGTTGATCAGGGAAGAATATTAGACTGCAACATTATCTTTCATTGATATCGATGGTAAATTGTTTCGTAATTGGGAAAAGCCTATCTGGGATTAGGCAATATGTTTGCCTTTTTGCCTTGTAGTGATTCTTTTAGAAGCAATAAACTGCATGTAGAGATTTTTGTCACAAATCGTAAGTGTTTTATTCAAATAAAAGGCTGGTTACAACATTCTTGCTTACCAAAGCCAATTCCCCTTGTTTGTTATTGTCTCTGAGAAAAACACCTGCATTGCTACATGGGTAAATTAACTATTAACAATCTGTTGCTTGTTTTATTAATCATTTTTTCAGGTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAGGTAACCAATAGTCCTGATGTTTATCTTTCTATGTTAATATCCTCTTGCTTTCAATTAGATTATAGATTGGATTTCTCATGTATTTATGATTCTATATTTTTAGGGATTTGTTTTCTTATCATTCTCTCTGTGGAAGAGGTGTTGGTGTTCTTTGCATGTGTAGTTCTTGCATATTAATACTTATCCTTACTATTTGGTATACCCTCTGTATACAACTGTTTTGGCCATGTTCTGTGCATGCATTGTCCTTGCATAGTAATACTTAACCTTAACTTTTTGGTATACCCTTTATATACAACTGTTTTGGCCATGTTTATGAATGAAAATATTTTACTTTATCAGAAAAACTTAATACTTATCCTACGAATGTTTCATGAAAGATGATTGAATCCTCTTGATGCTGCATGGCAAGGATGATAAGTATAGAGTGAATTTTTCAAGCATTGGTTTATGTTAGCTTGTTAGTATCCTGTATAAGCTCTTAGAGGTTGCGTGTCTTTTTTTTTTTTTAAGGTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGGGTAAGGAAACAATTTGCACTAATGTGGTTATCTCTTGTGCTTTGCACTAATGTGGTTATCTTTTGTTGATAACTTGTTTGTTTATCAGCTACATATCGAGAAAAAAAAAGCTTGTTAGTAGAGCTAGAATGAAAAATCTAGTTGGAAAATTATTATATTTTATATTAGTGGTGTCCGAACCAGCTTGCTCGCACCTCAACTAGTCTAGGGGGTGAACTATCCAGTCCATGAGCATAGTACGAAGGTCCTGCCATCAAGGTTACAGCTGGTGGGCGCGCACCTACTGTTGTAACTGGGATTCAAACATGGGATCTCTCCCTGCATTTTCCATGCCTCAACACTGGGCCACTTCCTTGAGGACATAAGAGGTCATACTAATAACCACAGATCACACTAATAACCATGACCAGTTATAACATTGAAATATAAGCAGTATGAGTCTTTTGCAATGTTGTGTGGATATTCTAACGTAGATACTGGAATTGTACTGACCACTCTACAATCAATTTGTCTTACCATTCTATGCTCTGCCAATTTCTCTGCAGATACAATTTTCTGTAAAATTTATATTAGTTTACAATTGCTTCTGCTGACCATGAAATGGTGTTGCATTGTTAGAATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAGGTAATGTACAAGCAAGTTGATATCTTCATAAACTTTTCTTTTTATATTTCCAATTCCTATTCCATTTTGTGAAATTCTTAAAATTGTTGCTCATATTTGCAGAACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCCAGAAGGTCAAGAACAGATGGCCTGGTTAATTGACTTCACTGGATGGTCTATAACCAATAATGTTCCTGTAAAATCTGCTCGCGAGACCATCAATATTTTGCAAAACCACTACCCTGAGAGACTCGCTGCAGCACTTCTGTACAATCCACCGCGACTTTTTGAAACATTTTGGAGGGTTTGTTTTTCATCCTCTTTGTTTTTCTTACCTCCTCCCTGCTATTTGAACAAACCTAGCTTGTAGTGTTGTAGTTGAGTAAAACAAAACGCGTACTTCCTTTCATAAGTAGATGTGACTTCCTAATGCATCGGCAAAACTTCCTCTCTAAGAATGGAGCTGTTAATTTTGGAAGCTTTGAGTGGGGGGGAGGGGGGGGGGGGATCAGGCATTCAAATTTTCTACCATTGCCATGTCACCCAAATTTCTTACCGAAATTATTATCTATTTATTCTTTATATTGTTCAATCATTATCCATCCCCTTAATGTTATCTTTTTTTACTTTTCCAGATTGTCAAATACTTTATGGATCCCAAAACATTTCAAAAGGTCAAGTTTGTGTATCCAAAGAATAAGGATAGCGCGGAACTGATGAAGTCGTACTTCGACGTTGACAATCTTCCTACTGAGTTTGGAGGAACAGCTACACTGAAATATGATCACGAGGAGTTCTCAAGGCAAATGGCTCAAGATGATGTGAAGGCCGCCAAGTTTTGGGGTTCGGACAAACATCCCCCTGGTCCTGGTGGTAATGGTAATTACTCTGCAGTAGAAGTTGCTCCAGAACCTTAATCACTTACTCTATAAGCCACTGCCTGAGCTTAAATGATTGCAACACTGACAAAGCTCAGTCTCTTATATGCCTAACTAAGTTCAAATAAATAATGAGGAATGTAAGAATCATGTTCACAGACATTAGCTTATTTCAGATGAACTTTAATTGTAGGTTGAACTTTGATTTATGCAGAAATCAAAAAGCACTAAATATTTAAGCCTCA</genome_strand>
        <mrna_strand>TGCTCCTCAGATATAGAGAGAGAAAGAAGTGCGTGAGTGTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCATGACATTCTGTTGAAAAAAGGACCTCAAGCTCACTTTTTTGTG---CTTCTTCTTCTTCTTCCGTTTCTCGTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAG......................................................................................................AACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCCAGAAGGTCAAGAACAGATGGCCTGGTTAATTGACTTCACTGGATGGTCTATAACCAATAATGTTCCTGTAAAATCTGCTCGCGAGACCATCAATATTTTGCAAAACCACTACCCTGAGAGACTCGCTGCAGCACTTCTGTACAATCCACCGCGACTTTTTGAAACATTTTGGAGG...........................................................................................................................................................................................................................................................................................................................................ATTGTCAAATACTTTATGGATCCCAAAACATTTCAAAAGGTCAAGTTTGTGTATCCAAAGAATAAGGATAGCGCGGAACTGATGAAGTCGTACTTCGACGTTGACAATCTTCCTACTGAGTTTGGAGGAACAGCTACACTGAAATATGATCACGAGGAGTTCTCAAGGCAAATGGCTCAAGATGATGTGAAGGCCGCCAAGTTTTGGGGTTCGGACAAACATCCCCCTGGTCCTGGTGGTAATGGTAATTACTCTGCAGTAGAAGTTGCTCCAGAACCTTAATCACTTACTCTATAAGCCACTGCCTGAGCTTAAATGATTGCAACACTGACAAAGCTCAGTCTCTTATATGCCTAACTAAGTTCAAATAAATAATGAGGAATGTAAGAATCATGTTCACAGACATTAGCTTATTTCAGATGAACTTTAATTGTAGGTTGTACTTTGATTTATGCAGAAATCAAAAAGCGCTAAATATTTAAGCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319223" ref_strand="+" ref_description="SGN-U319223        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein, similar to polyphosphoinositide binding protein Ssh1p (GI:2739044) {Glycine max}; similar to SEC14 cytosolic factor (Phosphatidylinositol/phosphatidylcholine transfer protein) (PI/PCTP) (SP:P24859) (Kluyveromyces lactis) and to SEC14 cytosolic factor (SP:P53989) (Candida glabrata) | chr1:28217472-28220042 FORWARD | Aliases: F22H5.20, F22H5_20(evalue: 3e-55, score=211) genbank/nr: transporter-like(evalue: 5e-72, score=273)">
      <seq>gttaattgtttcgtaattgggaaaagcctatctgggattaggcaatatgtttgcctttttgccttgtagtgattcttttagaagcaataaactgcgtgtagagatttttgtcacaaatcataagtcttttattcaaataaaaggctggttacaacattcttgcttaccaaagccaattccccttgtttgttattgtctgtgaaaaaaacatctgcattgctacatggtaaattaactattaacaatctgttgcttgttttattaatcattttttcaggtaaagctcaagtaagagacaaattatagtagcattcaccatgtttcgtcgcaagaaccactctaatagtgaacagggggttgaggaccagcagcacaaggttaaggagcttagggcttccctggggcaactctcagggcgcagtgcacagttctgcactgatgcatgtttaaaaaggtttttggaggcacggaattggaatgtagataaagcaaagaagatgttggaggagacgcttaaatggagattatcgtttaaacctgaagaaattcgctggaatgaagtagcgaaagaaggtgagactgggaaggtgtttaaagcaaattttcatgaccgccatggcaggacagtcctaatattacggccaggaatgcagaacacggcagcactagacaaccagatgaagcatttggtgtatctaatcgagaatgccatttttaatctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="104848" stop="107405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105148" g_stop="105525" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105526" i_stop="106038" i_length="513">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106039" g_stop="106215" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="554" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106216" i_stop="106833" i_length="618">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106834" g_stop="106932" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="653" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106933" i_stop="107034" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107035" g_stop="107105" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="724" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U319223" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105148" e_stop="105525"/>
          <exon e_start="106039" e_stop="106215"/>
          <exon e_start="106834" e_stop="106932"/>
          <exon e_start="107035" e_stop="107105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATTGTTTCGTAATTGGGAAAAGCCTATCTGGGATTAGGCAATATGTTTGCCTTTTTGCCTTGTAGTGATTCTTTTAGAAGCAATAAACTGCATGTAGAGATTTTTGTCACAAATCGTAAGTGTTTTATTCAAATAAAAGGCTGGTTACAACATTCTTGCTTACCAAAGCCAATTCCCCTTGTTTGTTATTGTCTCTGAGAAAAACACCTGCATTGCTACATGGGTAAATTAACTATTAACAATCTGTTGCTTGTTTTATTAATCATTTTTTCAGGTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAGGTAACCAATAGTCCTGATGTTTATCTTTCTATGTTAATATCCTCTTGCTTTCAATTAGATTATAGATTGGATTTCTCATGTATTTATGATTCTATATTTTTAGGGATTTGTTTTCTTATCATTCTCTCTGTGGAAGAGGTGTTGGTGTTCTTTGCATGTGTAGTTCTTGCATATTAATACTTATCCTTACTATTTGGTATACCCTCTGTATACAACTGTTTTGGCCATGTTCTGTGCATGCATTGTCCTTGCATAGTAATACTTAACCTTAACTTTTTGGTATACCCTTTATATACAACTGTTTTGGCCATGTTTATGAATGAAAATATTTTACTTTATCAGAAAAACTTAATACTTATCCTACGAATGTTTCATGAAAGATGATTGAATCCTCTTGATGCTGCATGGCAAGGATGATAAGTATAGAGTGAATTTTTCAAGCATTGGTTTATGTTAGCTTGTTAGTATCCTGTATAAGCTCTTAGAGGTTGCGTGTCTTTTTTTTTTTTTAAGGTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGGGTAAGGAAACAATTTGCACTAATGTGGTTATCTCTTGTGCTTTGCACTAATGTGGTTATCTTTTGTTGATAACTTGTTTGTTTATCAGCTACATATCGAGAAAAAAAAAGCTTGTTAGTAGAGCTAGAATGAAAAATCTAGTTGGAAAATTATTATATTTTATATTAGTGGTGTCCGAACCAGCTTGCTCGCACCTCAACTAGTCTAGGGGGTGAACTATCCAGTCCATGAGCATAGTACGAAGGTCCTGCCATCAAGGTTACAGCTGGTGGGCGCGCACCTACTGTTGTAACTGGGATTCAAACATGGGATCTCTCCCTGCATTTTCCATGCCTCAACACTGGGCCACTTCCTTGAGGACATAAGAGGTCATACTAATAACCACAGATCACACTAATAACCATGACCAGTTATAACATTGAAATATAAGCAGTATGAGTCTTTTGCAATGTTGTGTGGATATTCTAACGTAGATACTGGAATTGTACTGACCACTCTACAATCAATTTGTCTTACCATTCTATGCTCTGCCAATTTCTCTGCAGATACAATTTTCTGTAAAATTTATATTAGTTTACAATTGCTTCTGCTGACCATGAAATGGTGTTGCATTGTTAGAATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAGGTAATGTACAAGCAAGTTGATATCTTCATAAACTTTTCTTTTTATATTTCCAATTCCTATTCCATTTTGTGAAATTCTTAAAATTGTTGCTCATATTTGCAGAACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCC</genome_strand>
        <mrna_strand>GTTAATTGTTTCGTAATTGGGAAAAGCCTATCTGGGATTAGGCAATATGTTTGCCTTTTTGCCTTGTAGTGATTCTTTTAGAAGCAATAAACTGCGTGTAGAGATTTTTGTCACAAATCATAAGTCTTTTATTCAAATAAAAGGCTGGTTACAACATTCTTGCTTACCAAAGCCAATTCCCCTTGTTTGTTATTGTCTGTGAAAAAAACATCTGCATTGCTACAT-GGTAAATTAACTATTAACAATCTGTTGCTTGTTTTATTAATCATTTTTTCAGGTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGTTGAGGACCAGCAGCACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGGCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAG......................................................................................................AACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339610" ref_strand="+" ref_description="SGN-U339610        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:28219134-28222237 REVERSE | Aliases: None(evalue: 1e-65, score=246) genbank/nr: gi|21553509|gb|AAM62602.1| unknown [Arabidopsis thaliana](evalue: 1e-64, score=249)">
      <seq>cgttatggtaaaagatgttcagtgtactcagaaggagcctcttgctttcttcgaagggaccgtgttgataagaaagctgaagaagctacatttgtgagcacagatagtataagattgactgggagtgtgaactttgaggtttcatataaagatgatctttttctctctgggactttggagatggccaacatcaatgattctcaaaactgtcttaggagatggagcatgaactgtgaatcagttatgagtgctggcacgggatttctgaaaggaaaacatattgtgggttctgaatcattgtcaccgacaattgaagtgtatgttactggttgcttctctgggacacctatcatcttaactaagactttgcagctaaatcacaggaagaagcaccatagaaagggtatgttggactccattccggagcatgacacatctgaacagcataaagaagtctcatctgaacatgatctgcaggtaacagaatacaacggaaactacaaaccagaaagcgaagaagactacaacaacatgtactggggacgaacagaacttatggatggtgaagacggagaaatgtcctggttcaatgctggggttcgagttggtgttgggattggccttggcatttgtgtaggagttggagtaggagttggtttattagtccgtactacacgaaacttaagaaggcgccttatgtaattacatagcatacatataaaaggctaacaatacagagatgctgtttttaagaatatattgtaatttttcgacgttgctaaccattttctttttcatgtgtaatctgtttgctgcatttttgtggtgagttgctaaaactgtatggacatgtttttaggtaatattgtatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="111770" stop="108043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111471" g_stop="110994" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110993" i_stop="108738" i_length="2256">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108737" g_stop="108343" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="873" r_length="396" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-U339610" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111471" e_stop="110994"/>
          <exon e_start="108737" e_stop="108343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAATGGTATAAGATGTTCAGTGCACTCGGAAGGAGCCTCTTGCTTTCTTCGAAGGGACCGTGTTGATAAGAAAGCTGAAGAAGCTACATTTGTGAGCACAGATAGTATAAGATTGACTGGGAGTGTGAACTTTGAGGTTTCATATAAAGATGATCTTTTTCTCTCTGGGACTTTGGAGATGGCCAACATCAATGATTCTCAAAACTGTCTTAGGAGATGGAGCATGAACTGTGAATCAGTTATGAGTGCTGGCACGGGATTTCTGAAAGGAAAACATATTGTGGGTTCTGAATCATTGTCACCGACAATTGAAGTCTATGTTACCGGTTGCTTCTCTGGGACACCTATCATCTTAACTAAGACTTTGCAGCTAAATCACAGGAAGAAGCACCATAGAAAGGGTATGTTAGACTCCATTCCGGAGCATGACACTTCTGAACAGCATAAAGAAGTCTCATCTGAACATGATCTGCAGGTATTATTTGTTCCTCAGACCTTTTTCCTTACGTAATCGAAATCTTAAACATGCAAAATGGTTGACATGGCATATGCCTACAGCCTAACTCTTTACATAGTTAACCAATAGGTGGAATGAGATAATCGACATCATTGCCTTCAGTTTATTCAGTGTCTTTCTGATATTTTTCGAGAGACCTAAAAATGTTTTGGGATCCGTCTTCCTCTTTGATTCAAACTGAATTTGAACTTATTTTAAGTGGTGGAAACAAGCTGAAAAAGTTAAACAGTGTGAAAAGAGACTTTTAAAAAGACTGGGATATGTCGTCTTTGAAAGTTTCCAAATGGTTAGGGTCTATGTTGCTCGAATTCTTCAAAAATGTCTCTAGGTGCGTGTCCCTTCAAAAGTAGTGTATTTTTGGAGGATCTGACACAGGGCGGCAACATTTTTGGAGATTCCGAACAACTTAGGTTAGGGCTGCACAAACGATCAGCCTAAAATGACTAGAACATTTCTACAAATTCTTCTTTTTCAAATGATAACTGTGGTACACTATATACAATTTCACTTGTTGAATTGTATTTAAATTTTTTTATACGTTTAAGCCCCAAAATGTTTACGTCTCTTTTCCTTGTTGGTGATCTATCAAGAAGTAATGCATGATATCCTATACACAGCTCTTTCCTCAGAATTGTTATTATTGATTGCACAGGCACCTTCAATATATGTCTTCTAACCAAAGATAACTACATTAATGGTATTCCATTGACAGAATGGGGTCAGTAAAAGCATGGCCCTGACAACTCGTCACAGTTTACTCTACCCTTGTATCTAGCTTCATAATGTTTCATGCCATGAAACATGTTTATTTAATTTTGTCGCGATCTACGAAAAGTTCGCATCTTTAAGGAGAATCACCTGACACTGGAAATAGAATCTTATATTAAAAATGTCAGAGGGTATGGGCAGCTCATACTTTTAACTAATTGTTTAATTATATTATTGCATTGTCCCTATCCTTCTAGTTTTTCTTTACTGATAAAACAAAATTGTCCCTATCCTTCTAGAAATTGGCGTGCATTGGAGGTTATCATCAGGATGGCAACTAGATGGGCTGCCATCTTTTTCTCATTTTCATTCCATTTCAGCTCATTGAGAGTACTTGACCATTCTGATGTCTTCTTTGAGCTAATTAGAATAGACTCTTCCGTTATAGTCTCCATAAATTAGATAGATTTTCTGAAGGTGGTCTGAATGCATATTATCTTGAAGCAAAATGTCAGATGGAATACAACAATTATACCTACGATTCAGTCCCAAATAAGTCAACGTCAGCTATATGAATCCTCAATCTTTTATTTGAGCTCATTTCATATAATCATCATATTAAATAAAATAAAAGTGAGAAATATGTTCAATAAATATTGATTTATAATGTTAATGATAATTAATATTAGAAGTTCTCTAACGAGTCTAAAACATATCCTCTACTAGTAGTTATCACCTGTCTGGATCTTTACTTTCATCGTAGCCTATCTTTTGTTAATTTTGCGTTGCTGCCTAGCATTTGTAGCTCTTTTGGGAAAGCTTCCTCCCGATTGTCATTCAGTTGGACAATATTGAAGTGTCAGCTGCAAAAATCTAAGGCCGTCCATCTATCATCCCCTGTATGAATATTCTTGTCTAGATAATATAGTGGGAATTCGTCACGTGCTATCCATCTTTCATGATTAACTTTAGAAATGCTATGATATATGAATTCTGCTTCTGATGATAACACTTAGCTCCTTGCTCTGATGTTGTGTGATTGAATAGTGCCATCCAGTTTTGTTCTTACATTTTTTTGCACTCCATATGGCAACCTTAGTGACATTTGTTTCTTTTGGGATATCGAATCCATTACGTGACGAACATTAGCTTGTTATACGTCAACGTTGTTCCAAACTCAAGTTGACTTTTCTTGAAAGTAAATCCAAAGTTTGAAAGTTTCAGCTCATGTGTAAGTATTGCCTATGTGCTGCTTTAATTTTTGAAGTTGACAAAAATTAGTTGCATTTCATCTACAGTTTCTGATTGTTAAGTTTTCTGTGTCGTTTCGATTGAAAAATATTATCATGGCAGTGGTTGGTTTTAGTAATTCTTTAGTACTTGTTTATTTTGAACCACAAAGTAGAGTTCCACAGGTGCAATTAATTAGATGAATCCCACAGCTTCTCAGATGTGTAATTACATGATGGAAACTGCACAGGTTCTGAAGTTCATTGTGTTTCACAGGTAACAGAATACAACGGAAACTACAAACCAGAAAGCGAAGAAGACTACAACAACATGTACTGGGGACGAACAGAACTTATGGATGGTGAAGACGGAGAAATGTCCTGGTTCAATGCTGGGGTTCGAGTTGGTGTTGGGATTGGCCTTGGCATTTGTGTAGGAGTTGGAGTAGGAGTTGGTTTATTAGTCCGTACTACACGCAACTTAAGAAGGCGCCTTATGTAATTACATAGCATACGTAT-AAAGGCTAACAATACAGAGATACTGTTTTTAAGAATATATTGTAATTTTTCGACGTTGCTAACCATTTTCTTTTTCATGTGTAATCTGTTTGCTGCATTTTTGTGGTGAGTTGCTAAAGCTGTATGGACATGTTTTTAGGTAATATTGTATCA</genome_strand>
        <mrna_strand>CGTT-ATGGTAAAAGATGTTCAGTGTACTCAGAAGGAGCCTCTTGCTTTCTTCGAAGGGACCGTGTTGATAAGAAAGCTGAAGAAGCTACATTTGTGAGCACAGATAGTATAAGATTGACTGGGAGTGTGAACTTTGAGGTTTCATATAAAGATGATCTTTTTCTCTCTGGGACTTTGGAGATGGCCAACATCAATGATTCTCAAAACTGTCTTAGGAGATGGAGCATGAACTGTGAATCAGTTATGAGTGCTGGCACGGGATTTCTGAAAGGAAAACATATTGTGGGTTCTGAATCATTGTCACCGACAATTGAAGTGTATGTTACTGGTTGCTTCTCTGGGACACCTATCATCTTAACTAAGACTTTGCAGCTAAATCACAGGAAGAAGCACCATAGAAAGGGTATGTTGGACTCCATTCCGGAGCATGACACATCTGAACAGCATAAAGAAGTCTCATCTGAACATGATCTGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGAATACAACGGAAACTACAAACCAGAAAGCGAAGAAGACTACAACAACATGTACTGGGGACGAACAGAACTTATGGATGGTGAAGACGGAGAAATGTCCTGGTTCAATGCTGGGGTTCGAGTTGGTGTTGGGATTGGCCTTGGCATTTGTGTAGGAGTTGGAGTAGGAGTTGGTTTATTAGTCCGTACTACACGAAACTTAAGAAGGCGCCTTATGTAATTACATAGCATACATATAAAAGGCTAACAATACAGAGATGCTGTTTTTAAGAATATATTGTAATTTTTCGACGTTGCTAACCATTTTCTTTTTCATGTGTAATCTGTTTGCTGCATTTTTGTGGTGAGTTGCTAAAACTGTATGGACATGTTTTTAGGTAATATTGTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339611" ref_strand="+" ref_description="SGN-U339611        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:28219134-28222237 REVERSE | Aliases: None(evalue: 7e-12, score=60.1) genbank/nr: gi|18389258|gb|AAL67072.1| unknown protein [Arabidopsis thaliana](evalue: 5e-10, score=60.1)">
      <seq>tcacgtgctatccatctttcatgattaactttagaaatgctatgatatatgaattctgcttcttatgataacacttagctccttgctctgatgttgtgtgattgaatagtgccatccagttttgttcttacatttttttgcactccatatggcaaccttagtgacatttgtttcttttgggatatcgaatccattacgtgacgcatattagcttgttatacgtcaacgttgttccaaactcaagttgacttttcttgaaagtaaatccaaagtttgaaattttcagctcatgtgtaagtattgcctatgtgctgctttaattttgaagttgacaaaaattagttgcatttcatctacagtttctgattgttaagttttctgtgtcgtttcgattgaaaaatattatcatggcagtggttggttttagtaattctttagtacttgtttattttgaaccacaaagtagagttccacaggtgcaattaattagatgaatcccacagcttctcagatgtgtaattacatgatggaaactgcacaggttctgaagttcattgtgtttcacaggtaacagaatacaaaggaaactacaaaccagaaagcgaagaagactacaacaacatgtactggggacgaacagaacttatggatggtgaagacggagaaatgtcctggttcaatgctgggttcgagtttgtgttgggattggccttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="109605" stop="108288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109305" g_stop="108588" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-U339611" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109305" e_stop="108588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGTGCTATCCATCTTTCATGATTAACTTTAGAAATGCTATGATATATGAATTCTGCTTCTGATGATAACACTTAGCTCCTTGCTCTGATGTTGTGTGATTGAATAGTGCCATCCAGTTTTGTTCTTACATTTTTTTGCACTCCATATGGCAACCTTAGTGACATTTGTTTCTTTTGGGATATCGAATCCATTACGTGACGAACATTAGCTTGTTATACGTCAACGTTGTTCCAAACTCAAGTTGACTTTTCTTGAAAGTAAATCCAAAGTTTGAAAGTTTCAGCTCATGTGTAAGTATTGCCTATGTGCTGCTTTAATTTTTGAAGTTGACAAAAATTAGTTGCATTTCATCTACAGTTTCTGATTGTTAAGTTTTCTGTGTCGTTTCGATTGAAAAATATTATCATGGCAGTGGTTGGTTTTAGTAATTCTTTAGTACTTGTTTATTTTGAACCACAAAGTAGAGTTCCACAGGTGCAATTAATTAGATGAATCCCACAGCTTCTCAGATGTGTAATTACATGATGGAAACTGCACAGGTTCTGAAGTTCATTGTGTTTCACAGGTAACAGAATACAACGGAAACTACAAACCAGAAAGCGAAGAAGACTACAACAACATGTACTGGGGACGAACAGAACTTATGGATGGTGAAGACGGAGAAATGTCCTGGTTCAATGCTGGGGTTCGAGTTGGTGTTGGGATTGGCCTTGGC</genome_strand>
        <mrna_strand>TCACGTGCTATCCATCTTTCATGATTAACTTTAGAAATGCTATGATATATGAATTCTGCTTCTTATGATAACACTTAGCTCCTTGCTCTGATGTTGTGTGATTGAATAGTGCCATCCAGTTTTGTTCTTACATTTTTTTGCACTCCATATGGCAACCTTAGTGACATTTGTTTCTTTTGGGATATCGAATCCATTACGTGACGCATATTAGCTTGTTATACGTCAACGTTGTTCCAAACTCAAGTTGACTTTTCTTGAAAGTAAATCCAAAGTTTGAAATTTTCAGCTCATGTGTAAGTATTGCCTATGTGCTGCTTTAA-TTTTGAAGTTGACAAAAATTAGTTGCATTTCATCTACAGTTTCTGATTGTTAAGTTTTCTGTGTCGTTTCGATTGAAAAATATTATCATGGCAGTGGTTGGTTTTAGTAATTCTTTAGTACTTGTTTATTTTGAACCACAAAGTAGAGTTCCACAGGTGCAATTAATTAGATGAATCCCACAGCTTCTCAGATGTGTAATTACATGATGGAAACTGCACAGGTTCTGAAGTTCATTGTGTTTCACAGGTAACAGAATACAAAGGAAACTACAAACCAGAAAGCGAAGAAGACTACAACAACATGTACTGGGGACGAACAGAACTTATGGATGGTGAAGACGGAGAAATGTCCTGGTTCAATGCT-GGGTTCGAGTTTGTGTTGGGATTGGCCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320792" ref_strand="+" ref_description="SGN-U320792        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: hypothetical(evalue: 3e-11, score=24.6)">
      <seq>gggttttgtatgtaaagatgaaaggttttgcttagcaccaaaagagctaaacacatgagttatttcttatgaaaaaaaaaatattattagctctaccatctcataaaatggattgtcacaaagattgatgggaaagaagaaagttgtgaagaaaacaaaagagttatcagtagcaatagcagaatcatcagcaatgagtggagattcacaacaacaacaacaaattactcctagaaaaagaggaagaccaagaaagattattagtattgtaaaagaagatgaagaaaaagtttctgctgaattaaagaaactcaaaacaaatgaagttgaaaaatcacaaggtgaaaacaaaaaagaagatgaatttgaagaggataaaaatttacaaccacaaaagcaacaacctacaaggagcaaagctagaaaaaaaagcaaaccaagaaagagttgctaatttaattttttccgatcaacagtattcccacttatcctctaacgatgtgactctaaatggatcgataatagatgtgctaaactacttgagctactaaaattcaggtgtcaagaatcccctttttcttttaggtaatttttgaaacaaagtaatttcatctttcctagtttaatttcttagtgctatagctagtttttaatttttttttaattttgttgtttagtatgtctattttaattgtgaggaatattttagttagggagcaattgttattagctttacactctggattgaattgtgatatgtcacattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="117388" stop="120251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117687" g_stop="117794" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117795" i_stop="119289" i_length="1495">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119290" g_stop="119951" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="770" r_length="662" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U320792" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117687" e_stop="117794"/>
          <exon e_start="119290" e_stop="119951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAAAAATATTATTAGCTCTACCATCTCATAAAAGTAAGTTATTCATTTCTTTTACTTTTTCTTATCATCTTTGCTTTGGGTATGTTGTGTTGGGTTAATTACTAGGGGGTGGGGGTGTATAGATTTATTTATATGCAAAAAAGAGTTTTTGAGTAATTTTCAAGATTGGATTTTCTTATCATATACCACAAGGGTGTATATATATATGCAAAAGAGAACACCAAAAATCTTGAAGATTTGATTTTTTTTTTTGTGAGTAATTTTCAAGATTGGGTTTTTATTAAGAGTGTATAATTATATGCAAAAGAGAGCACTAAAAGCTTTGAAGATTGAAATTTTTACTTTGTGGGTAGTTTCAAGATTAGATTTTTAAGGTTACATATGCAAAAGAGAACACTAGATATTTTGAAGATTGAATTTTTATTTTGTGGGTAGTTTCAAGATTTGAATTTTAAGGTTATATATGCAAAATAGAAAATACTAGAAACCTTAGAAATTGAATTTTTATTTAGTGGGTAGTTTTAAGATTGGATTTTAAGGTTATATAGGCAAAGGAGAGGAAAATTCAATCTTTAAGGTCTCTAGTCCTTTAAAAGATTGGTTTGTTATTTTGTGGGTAGTTTTCAAGATTGGATTTTAAAGGTAATATATGCAAAAGAGAAATACTTGAAACCTTAAAAGATTGAATTTTTATTTGTGGGTATTTTCAAGATTGGATTTTTAAGGTAATATATACATAAGGGAACACTAAAAAACCTTAAAGATTGAATTTTTTATTTTGTGGGTAATTTCAAGATTGAATTTTTTAGGTTATATATGCAAAAGAGAGCTATAGAAACCTTAAAGATTGGATTTTAGTTTTCAAGATTGGATTTAAAGGTTATATGTGCAAAAGAGAATACTACAAACCTTAAATATTGAATTTTTATTTTGTGGGTAGTTCCAAGATTGGATTTTTAAGGCTATATATGCAAATGAGAGCATTGGAAACATTAAAGATTGAATTTTCATTTTGTGGGTAGTTTCAAGATTGGATTTTAAAGGTAATATATACAAAAGAGAACACTAAAAACCTTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGATTGGATTTTTAAGTCTATATATGCAAATGAGACCACTAGAGACATTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGGTTGAATTTTTATTTTGTGGGTAGTTTCAAGATTGAATTTTTTTTAAGGTTATATATGCAAAAGAAAACACTAGAAATCTTAAAGATAGGATTTTTATGTTGTGGTTTGTTTTCAAAATTGGATTTTAATTATCATATGTAGCTAAAAGAAAGCTCTAGAGGCCTTAAACTTTGGGGATTTTTATTTTTGGGTAATTTTCAAGATTGAATTTTGTTATCATATATACTAAGAGAGAGCAATAGAAACCTTAAAAATTGAATTTTTGTTTCTTGGAGTTTTTCAAGATTCTATTTTTATCATATTATAAGCTTTTGAAATGACTAAATTAGTTTAGTGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCTGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATCGATCGATGATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTCTTAGTGCTATAGCTAGTTTTTAATTTTTTTTTAATTTTGTTGTTTAGTATGTCTATTTTAATTGTGAGGAATATTTTAGTTAGGGAGCAATTGTTATTAGCTTTACACTCTGGATTGAATTGTGATATGTCACATTAATG</genome_strand>
        <mrna_strand>GGGTTTTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAAAAATATTATTAGCTCTACCATCTCATAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAAAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAAAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAAAGCTAGAAAAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCCGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTAAATGGATCGATAATAGATGTGCTAAACTACTTGAGCTACTAAAATTCAGGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTCTTAGTGCTATAGCTAGTTTTTAATTTTTTTTTAATTTTGTTGTTTAGTATGTCTATTTTAATTGTGAGGAATATTTTAGTTAGGGAGCAATTGTTATTAGCTTTACACTCTGGATTGAATTGTGATATGTCACATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320791" ref_strand="+" ref_description="SGN-U320791        Tomato 200607 #1 [7 ESTs aligned] genbank/nr: hypothetical(evalue: 3e-11, score=24.6)">
      <seq>ttgtatgtaaagatgaaaggttttgcttagcaccaaaagagctaaacacatgagttatttcttatgaaaaaaaaaaatattattagctctaccatctcataaaaattgatgggaaagaagaaagttgtgaagaaaacaaaagagttatcagtagcaatagcagaatcatcagcaatgagtggagattcacaacaacaacaacaaattactcctagaaaaagaggaagaccaagaaagattattagtattgtaaaagaagatgaagaagaagtttctgctgaattaaagaaactcaaaacaaatgaagttgaagaatcacaaggtgaaaacaaaaaagaagatgaatttgaagaggataaaaatttacaaccacaaaagcaacaacctacaaggagcagagctagaagaaaaagcaaaccaagaaagagttgctaatttaattttttccgatcaacagtattcccacttatcctctaacgatgtgactctgaatggatcgataatagatgtgctaaactacttgagctactaaaattcatgtgtcaagaatcccctttttcttttaggtaatttttgaaacaaagtaatttcatctttcctagtttaatttcttagtgctatagctagtttttaattttttttttaattttgttgtttagtatgtctattttaattgtgaggaatattttagttagggagcaattgttattagctttacactctggattgaattgtgatatgtccattaatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="117392" stop="120253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117692" g_stop="117794" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117795" i_stop="119304" i_length="1510">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.662" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119305" g_stop="119952" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="752" r_length="648" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="753" polyA_stop="795"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U320791" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117692" e_stop="117794"/>
          <exon e_start="119305" e_stop="119952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAA-AAATATTATTAGCTCTACCATCTCATAAAAGTAAGTTATTCATTTCTTTTACTTTTTCTTATCATCTTTGCTTTGGGTATGTTGTGTTGGGTTAATTACTAGGGGGTGGGGGTGTATAGATTTATTTATATGCAAAAAAGAGTTTTTGAGTAATTTTCAAGATTGGATTTTCTTATCATATACCACAAGGGTGTATATATATATGCAAAAGAGAACACCAAAAATCTTGAAGATTTGATTTTTTTTTTTGTGAGTAATTTTCAAGATTGGGTTTTTATTAAGAGTGTATAATTATATGCAAAAGAGAGCACTAAAAGCTTTGAAGATTGAAATTTTTACTTTGTGGGTAGTTTCAAGATTAGATTTTTAAGGTTACATATGCAAAAGAGAACACTAGATATTTTGAAGATTGAATTTTTATTTTGTGGGTAGTTTCAAGATTTGAATTTTAAGGTTATATATGCAAAATAGAAAATACTAGAAACCTTAGAAATTGAATTTTTATTTAGTGGGTAGTTTTAAGATTGGATTTTAAGGTTATATAGGCAAAGGAGAGGAAAATTCAATCTTTAAGGTCTCTAGTCCTTTAAAAGATTGGTTTGTTATTTTGTGGGTAGTTTTCAAGATTGGATTTTAAAGGTAATATATGCAAAAGAGAAATACTTGAAACCTTAAAAGATTGAATTTTTATTTGTGGGTATTTTCAAGATTGGATTTTTAAGGTAATATATACATAAGGGAACACTAAAAAACCTTAAAGATTGAATTTTTTATTTTGTGGGTAATTTCAAGATTGAATTTTTTAGGTTATATATGCAAAAGAGAGCTATAGAAACCTTAAAGATTGGATTTTAGTTTTCAAGATTGGATTTAAAGGTTATATGTGCAAAAGAGAATACTACAAACCTTAAATATTGAATTTTTATTTTGTGGGTAGTTCCAAGATTGGATTTTTAAGGCTATATATGCAAATGAGAGCATTGGAAACATTAAAGATTGAATTTTCATTTTGTGGGTAGTTTCAAGATTGGATTTTAAAGGTAATATATACAAAAGAGAACACTAAAAACCTTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGATTGGATTTTTAAGTCTATATATGCAAATGAGACCACTAGAGACATTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGGTTGAATTTTTATTTTGTGGGTAGTTTCAAGATTGAATTTTTTTTAAGGTTATATATGCAAAAGAAAACACTAGAAATCTTAAAGATAGGATTTTTATGTTGTGGTTTGTTTTCAAAATTGGATTTTAATTATCATATGTAGCTAAAAGAAAGCTCTAGAGGCCTTAAACTTTGGGGATTTTTATTTTTGGGTAATTTTCAAGATTGAATTTTGTTATCATATATACTAAGAGAGAGCAATAGAAACCTTAAAAATTGAATTTTTGTTTCTTGGAGTTTTTCAAGATTCTATTTTTATCATATTATAAGCTTTTGAAATGACTAAATTAGTTTAGTGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCTGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATCGATCGATGATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTCTTAGTGCTATAGCTAGTTTTTAA-TTTTTTTTTAATTTTGTTGTTTAGTATGTCTATTTTAATTGTGAGGAATATTTTAGTTAGGGAGCAATTGTTATTAGCTTTACACTCTGGATTGAATTGTGATATGTCACATTAATGA</genome_strand>
        <mrna_strand>TTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAAAAAATATTATTAGCTCTACCATCTCATAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCCGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATGGATCGATAATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTCTTAGTGCTATAGCTAGTTTTTAATTTTTTTTTTAATTTTGTTGTTTAGTATGTCTATTTTAATTGTGAGGAATATTTTAGTTAGGGAGCAATTGTTATTAGCTTTACACTCTGGATTGAATTGTGATATGTC-CATTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332258" ref_strand="+" ref_description="SGN-U332258        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>caaaatagaaaatactagaaaccttagaaattgaatttttatttagtgggtagttttaagattgaattttaaggttatataggcaaaggagaggaaaattcaatctttaaggtctctagtcctttaaaagattggtttgttattttgtgggtagttttcaagattggattttaaaggtaatatatgcaaaagagaaatacttgaaaccttaaaagattgaatttttatttgtgggtattttcaagattggatttttaaggtaatatatacataagggaacactaaaaaaccttaaagattgaattttttattttgtgggtaatttcaagattgaattttttaggttatatatgcaaaagagagctatagaaaccttaaagattggattttagttttcaagattggatttaaaggttatatgtgcaaaagagaatactacaaaccttaaatattgaatttttattttgtgggtagttccaagattggatttttaaggctatatatgcaaatgagagcattggaaacattaaagattgaattttcattttgtgggtagtttcaagattggattttaaaggtaatatatacaaaagagaacactaaaaaccttaaagattgaatttttattttgtgggtattttcaagattggatttttaagtctatatatgcaaatgagaccactagagacattaaagattgaatttttattttgtgggtattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="117928" stop="119252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118228" g_stop="118952" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U332258" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118228" e_stop="118952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATAGAAAATACTAGAAACCTTAGAAATTGAATTTTTATTTAGTGGGTAGTTTTAAGATTGGATTTTAAGGTTATATAGGCAAAGGAGAGGAAAATTCAATCTTTAAGGTCTCTAGTCCTTTAAAAGATTGGTTTGTTATTTTGTGGGTAGTTTTCAAGATTGGATTTTAAAGGTAATATATGCAAAAGAGAAATACTTGAAACCTTAAAAGATTGAATTTTTATTTGTGGGTATTTTCAAGATTGGATTTTTAAGGTAATATATACATAAGGGAACACTAAAAAACCTTAAAGATTGAATTTTTTATTTTGTGGGTAATTTCAAGATTGAATTTTTTAGGTTATATATGCAAAAGAGAGCTATAGAAACCTTAAAGATTGGATTTTAGTTTTCAAGATTGGATTTAAAGGTTATATGTGCAAAAGAGAATACTACAAACCTTAAATATTGAATTTTTATTTTGTGGGTAGTTCCAAGATTGGATTTTTAAGGCTATATATGCAAATGAGAGCATTGGAAACATTAAAGATTGAATTTTCATTTTGTGGGTAGTTTCAAGATTGGATTTTAAAGGTAATATATACAAAAGAGAACACTAAAAACCTTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGATTGGATTTTTAAGTCTATATATGCAAATGAGACCACTAGAGACATTAAAGATTGAATTTTTATTTTGTGGGTATTTTCA</genome_strand>
        <mrna_strand>CAAAATAGAAAATACTAGAAACCTTAGAAATTGAATTTTTATTTAGTGGGTAGTTTTAAGATTGAATTTTAAGGTTATATAGGCAAAGGAGAGGAAAATTCAATCTTTAAGGTCTCTAGTCCTTTAAAAGATTGGTTTGTTATTTTGTGGGTAGTTTTCAAGATTGGATTTTAAAGGTAATATATGCAAAAGAGAAATACTTGAAACCTTAAAAGATTGAATTTTTATTTGTGGGTATTTTCAAGATTGGATTTTTAAGGTAATATATACATAAGGGAACACTAAAAAACCTTAAAGATTGAATTTTTTATTTTGTGGGTAATTTCAAGATTGAATTTTTTAGGTTATATATGCAAAAGAGAGCTATAGAAACCTTAAAGATTGGATTTTAGTTTTCAAGATTGGATTTAAAGGTTATATGTGCAAAAGAGAATACTACAAACCTTAAATATTGAATTTTTATTTTGTGGGTAGTTCCAAGATTGGATTTTTAAGGCTATATATGCAAATGAGAGCATTGGAAACATTAAAGATTGAATTTTCATTTTGTGGGTAGTTTCAAGATTGGATTTTAAAGGTAATATATACAAAAGAGAACACTAAAAACCTTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGATTGGATTTTTAAGTCTATATATGCAAATGAGACCACTAGAGACATTAAAGATTGAATTTTTATTTTGTGGGTATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337219" ref_strand="+" ref_description="SGN-U337219        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 4e-11, score=24.6)">
      <seq>aacactagaaatcttaaagataggatttttatgttgtggtttgttttcaaaattggattttaattatcatatgtagctaaaagaaagctctagaggccttaaactttggggatttttatttttgggtaattttcaagattggattttgttatcatatatactaagagagagcaatagaaaccttaaaaattgaatttttgtttcttggagtttttcaagattctatttttatcatattataagcttttgaaatgactaaattagtttagtggattgtcacaaagattgatgggaaagaagaaagttgtgaagaaaacaaaagagttatcagtagcaatagcagaatcatcagcaatgagtggagattcacaacaacaacaacaaattactcctagaaaaagaggaagaccaagaaagattattagtattgtaaaagaagatgaagaagaagtttctgctgaattaaagaaactcaaaacaaatgaagttgaagaatcacaaggtgaaaacaaaaaagaagatgaatttgaagaggataaaaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="118721" stop="119866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119021" g_stop="119566" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U337219" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119021" e_stop="119566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTAGAAATCTTAAAGATAGGATTTTTATGTTGTGGTTTGTTTTCAAAATTGGATTTTAATTATCATATGTAGCTAAAAGAAAGCTCTAGAGGCCTTAAACTTTGGGGATTTTTATTTTTGGGTAATTTTCAAGATTGAATTTTGTTATCATATATACTAAGAGAGAGCAATAGAAACCTTAAAAATTGAATTTTTGTTTCTTGGAGTTTTTCAAGATTCTATTTTTATCATATTATAAGCTTTTGAAATGACTAAATTAGTTTAGTGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTA</genome_strand>
        <mrna_strand>AACACTAGAAATCTTAAAGATAGGATTTTTATGTTGTGGTTTGTTTTCAAAATTGGATTTTAATTATCATATGTAGCTAAAAGAAAGCTCTAGAGGCCTTAAACTTTGGGGATTTTTATTTTTGGGTAATTTTCAAGATTGGATTTTGTTATCATATATACTAAGAGAGAGCAATAGAAACCTTAAAAATTGAATTTTTGTTTCTTGGAGTTTTTCAAGATTCTATTTTTATCATATTATAAGCTTTTGAAATGACTAAATTAGTTTAGTGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319986" ref_strand="+" ref_description="SGN-U319986        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | flavodoxin family protein / radical SAM domain-containing protein, contains Pfam profiles PF00258: Flavodoxin, PF04055: radical SAM domain protein | chr1:28224287-28227368 REVERSE | Aliases: F22H5.13, F22H5_13(evalue: 0, score=684) genbank/nr: gi|34896894|ref|NP_909791.1| putative oxidoreductase [Oryza sativa (japonica cultivar-group)] gi|24899457|gb|AAN65027.1| putative oxidoreductase [Oryza sativa (japonica cultivar-group)](evalue: 0, score=691)">
      <seq>aggagttaacgataagttcattaatgggaagtcgaatggtggaactgtgaatggagagaaggcaatggtaactccagttattagagcgagtttggagaaacagggatataaaataattggcacgcatagcggtgtgaaactttgtagatggacaaaatcacaacttagagggcgcggaggttgctataagcactcattttatggcattgagagtcacaggtgcatggaggccactcctagtttagcatgtgcaaacaaatgtgttttttgttggagacatcacacaaatcctgttgggaagagctggacatggaagatggatgatcctattgagattgtgaacacagctatagatttgcataccaaaatgataaaacagatgaaaggcgttccaggtgttaaagctgagcgtttgtctgagggtctttctcctaggcattgtgctttgtcactggttggtgagcctattatgtatccagaaataaattcacttgtagatgagctgcacaggaggcggatttcgacttttcttgttactaatgcacagttccctgacaagattaagttattgaaaccaatcacacagttgtatgtcagcgtagatgcaggtacaaaggacagcttaaaagcaattgacagaccactatttggagacttctgggagcgatttcttgattctttgagagctcttaaggagaaggagcaaagaactgtctatcgtttgacactcgttaaagggtggaacacagaagatgtggatgcatattctagcctattcagcattgggaaacccgatttcattgaaatcaaaggtgtcacttattgtggaacgtcggctacatcaaagttgacaatggagaatgtcccttggcattctgatgtgaaggaattctctgaagccttggctaaaaagagcaacggagagtatgaggttgcctgtgagcacgtgcattcctgctgtgttcttctggctaaagtcgataagttcaaaatagacggtcaatggttcacgtggatagactacgagaagttccatgatctggtagcttctgggaaaccctttacaagtaaagattacatgacacccacaccatcttgggctgtctatggagctgaggaaggtggttttgacccagagcaattgcgtttcaaaaaagagcggcaccacagatcatctcgtcgggaaaatggttcttgaaatgttcgaagcaggttttcgttacctctgggatggcctaaaattttgttccttcgacttagattttgctttcctccattttcctatacaagttgcatttcactatataactgcagaagttgtcactgatatgaaaaatattgcttgtatgaacacttcgtatgttgtttcatacacaaatttttaattaattttgattatataaaacgattggaagatacttggtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="134860" stop="130503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134560" g_stop="134458" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134457" i_stop="134371" i_length="87">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134370" g_stop="134255" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="219" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134254" i_stop="133093" i_length="1162">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.818" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133092" g_stop="132917" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="395" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132916" i_stop="132478" i_length="439">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="132477" g_stop="132287" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="586" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="132286" i_stop="132195" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="132194" g_stop="132108" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="673" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="132107" i_stop="131768" i_length="340">
            <donor d_prob="0.876" d_score="1.00"/>
            <acceptor a_prob="0.752" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="131767" g_stop="131610" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="831" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="131609" i_stop="131502" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="131501" g_stop="131291" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="832" r_stop="1042" r_length="211" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="131290" i_stop="131188" i_length="103">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.508" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="131187" g_stop="130809" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1043" r_stop="1422" r_length="380" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1450" polyA_stop="1500"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-U319986" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1421</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134560" e_stop="134458"/>
          <exon e_start="134370" e_stop="134255"/>
          <exon e_start="133092" e_stop="132917"/>
          <exon e_start="132477" e_stop="132287"/>
          <exon e_start="132194" e_stop="132108"/>
          <exon e_start="131767" e_stop="131610"/>
          <exon e_start="131501" e_stop="131291"/>
          <exon e_start="131187" e_stop="130809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTTAACGATAAGTTCGTTAATGGGAAGTCGAATGGTGGAACTGTGAATGGAGAGAAGGCAATGGTAACTCCAGTTATTAGAGCGAGTTTGGAGAAACAGGTATCGTGGTCAAATGACGAACTTTTGTTGTATCAAATTAATTAGTTGGATTTATGGTAAGGTAGTTTATTTGGTGATAAATTGCAGGGATATAAAATAATTGGCACGCATAGCGGTGTGAAACTTTGTAGATGGACAAAATCACAACTTAGAGGGCGCGGAGGTTGCTATAAGCACTCATTTTATGGCATTGAGAGTCACAGGTGATTGTTTGTTTTTCTTCCAGCACAGACGGCTATTTATAACTTTTACATTTTTACTATTGCATTCTATCTATGAGTTGTGTAGTCCTTCTTTAATCCTTGGTTGACATAATTGTATTTGAGTTTTTAAAATTCTATGTGTTCAAGTTGCAACTGTGATGAGGTCCAGTTGTTTGGAAGTTTTTTAGGCTGCTAGAATTCTTAGAGTTGATCAAGTATGCGGTGAATAAGAATTTGCATGTGCTTATCCAGAAGAAGGATCTGTTTTTAGAGGCATGTGATATGGAGTAGGAGTAGAATAGTACGGAAACTTTCCATTTTACACAATGAACAACTAGAAATGAGCTGGAATTTTTATTGTGTTCAAATAGGCCCTCAGTGGAAAATCTCCTATTACGTAGCCAATTGAACCGTCTGAAGAGATTACAAAAGTAATCAAGCTTTTATAGCTTTTTTAAGAAGAAATAAGTAAAGGGATTCATTGATGGGTATCAAGTTCAGTAAGTTCAAAAGAGAGTTAGTTCCTATACTTGTCTACTGCCTAAATAGTTATGTTGCTCGGATTCTCCAAAAATTTTGCCATTGGATGCTTCAAAATTGTACTGTTTTTGAATGATCCAACACACACCCATGTTGTAAAAGGCGATCGCCTCGTCGCCAATGGCAAGAGGCGAAGCTAACCTTCATCGCCTTTTAGCTTTGTGGCGAGGCGATCTTCAAAAGGCGACGCCATGACGACAAAAGGCTTGAGGCAAGAGGTGATAAAGGCTAGAAAGGTGTCACCTTTTGTATTTCTTAAAAAAAGGCGACCAATTTAGGGTTTTAAAAGTTAAATGGTAATTTTAGGATTTTCGACCACTCCTCTGGTGACTCCAAAGTCTAACCAATACATATTTCTTCTTTTCTTCTTCAGACTTGAGTCACTTCTACCTTTGTTTTGACTTTTGTTCTCTTTTTTTTTTCTCATTCAAGTTCTAGACTTTTAGTATGTACTATCTATGTTTGAAGAGTCCGAGCAACATAACTTAATAGATCATGAGCTAACAAGAAAAGGTTCTATTGCATTGACCTTTTGTGCATCATTAAGTAGGCTTGATATTTATTGACTTCCTAACCATGTATGCTGATTTTAAATCTGGATTTGCATTTAACCACTGCATAGGTGCATGGAGGCCACTCCTAGTTTAGCATGTGCAAACAAATGTGTTTTTTGTTGGAGACATCACACAAATCCTGTTGGGAAGAGCTGGACATGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAGGTTTGTTTTCTGATACACTTGAACATATATGTTTCCGCATGAACTTGTAGGAAAGTTGAGCAATGCCACATTAGAAATAATGTGTTTGATTGAAATCATTTGGTGACTGTATTCAATATGTCTCTGTTTGGTCATTTTGTTGTGTCCGTTCAAGAAAAAGTACCTTGGGTTGAGTTGTGTTTAATTTTGATGCAATGTCCTTCCGATTTCCGAATAAAAAATGGTAAAACTGATACTGCTAACTGTTGGTTCTCCATTTTCTTACCCATTCGCATGAAATGTAGAAGTGGATACAGAATTTTCACAATTTTTTTAATCTGTCTGGATAAAATTGATGTCCTATCCACCGTACATATGCATTTTCTTTATTTTTTAAAAAATAGACGTCCTTCCACTTTCTTGCTTGTAGTGGTTAAGACCGAATATCTCACCCTTGCAGGTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAGGTCTACTAGGCTTTATTCTTCTTTCTTTATCAATGAAGTATGTTGATATCCAAATTCTGAATCTAAATCTCGCTTCATCTTTAAATTTACAGTTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTCTTGTAAGTGTCTTGAATATAAGATATTTGTCAGATTCAAGCTAAGAAATTAAGGAAAATCCATCAATGGATGGCACAAAGGAATGGGAAAATAGAGTCCAAAAACACAGTTAGGGTTGTTAGCTGCACACTAGTAAACCATAGCAGCGTGTCTCAAACTGATATTTATAATATATCAGTGAGAGGAAAGCTGTAAATTCTTACCTTTACATCAGTGCTAAAAAAGATTCGGCGGCCACGGGAAACTAAATCGAAATTTGCCATGTTTTCTCTGTTTTTTCATATTTGTATGCTACCATTCAGACTGGCTAATTATTGGATTGTGCTATTCGGATTTCATTAGGATTCTTTGAGAGCTCTTAAGGAGAAGGAGCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAACGTAAGTTTTCCCCCTCCCCCTCACTTTTTTCCTTTCCCCTCCCTCTTCTCTTCTACTAGTTTATCCGATTTCAAAGTTCAGTTAAGCAATCAGGGAGGTTTGACACAGGTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGAGAGTATGAGGTTGCCTGTGAGCATGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTCGCTAAGTTCAAAATAGACGGTCAATGGTTCACGTGGATAGACTACGAGAAGTTCCATGATCTGGTTGGTTACTTCTCTTGTTCATACCTCAGCACGTAAATTATAAGCATACCCTTCCCATTTCAATAGCGTAATCAATGTTTTTTAATCCCATGGCGCGCTACAGGTAGCTTCTGGGAAACCCTTTACAAGTAAAGATTACATGACACCTACACCATCTTGGGCTGTCTATGGAGCTGAGGAAGGTGGTTTTGACCCAGAGCAATTGCGTTTCAAAAAAGAGCGGCACCACAGATCATCTCGTCAGGAAAATGGTTCTTGAAATGTTCGAAGCAGGTTTTCGTTACCTCTGGGATGGCCTAAAATTTTGTTCCTTCGACTTAGATTTTGCTTTCCTCCATTTTCCTATACAAGTTGCATTTCACTATATAACTGCCGAAGTTGTCACTGATATGAAAAATATTGCTTGTATGAACACTTTGTATGTTGTTTCATACACAAA-TTTTAATTAATTTTGATTATATAAAACGATTGGAAGATACTTG</genome_strand>
        <mrna_strand>AGGAGTTAACGATAAGTTCATTAATGGGAAGTCGAATGGTGGAACTGTGAATGGAGAGAAGGCAATGGTAACTCCAGTTATTAGAGCGAGTTTGGAGAAACAG.......................................................................................GGATATAAAATAATTGGCACGCATAGCGGTGTGAAACTTTGTAGATGGACAAAATCACAACTTAGAGGGCGCGGAGGTTGCTATAAGCACTCATTTTATGGCATTGAGAGTCACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATGGAGGCCACTCCTAGTTTAGCATGTGCAAACAAATGTGTTTTTTGTTGGAGACATCACACAAATCCTGTTGGGAAGAGCTGGACATGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAG............................................................................................TTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTCTT....................................................................................................................................................................................................................................................................................................................................................GATTCTTTGAGAGCTCTTAAGGAGAAGGAGCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAAC............................................................................................................GTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGAGAGTATGAGGTTGCCTGTGAGCACGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTCGATAAGTTCAAAATAGACGGTCAATGGTTCACGTGGATAGACTACGAGAAGTTCCATGATCTG.......................................................................................................GTAGCTTCTGGGAAACCCTTTACAAGTAAAGATTACATGACACCCACACCATCTTGGGCTGTCTATGGAGCTGAGGAAGGTGGTTTTGACCCAGAGCAATTGCGTTTCAAAAAAGAGCGGCACCACAGATCATCTCGTCGGGAAAATGGTTCTTGAAATGTTCGAAGCAGGTTTTCGTTACCTCTGGGATGGCCTAAAATTTTGTTCCTTCGACTTAGATTTTGCTTTCCTCCATTTTCCTATACAAGTTGCATTTCACTATATAACTGCAGAAGTTGTCACTGATATGAAAAATATTGCTTGTATGAACACTTCGTATGTTGTTTCATACACAAATTTTTAATTAATTTTGATTATATAAAACGATTGGAAGATACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336990" ref_strand="+" ref_description="SGN-U336990        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | flavodoxin family protein / radical SAM domain-containing protein, contains Pfam profiles PF00258: Flavodoxin, PF04055: radical SAM domain protein | chr1:28224287-28227368 REVERSE | Aliases: F22H5.13, F22H5_13(evalue: 2e-70, score=262) genbank/nr: unknown(evalue: 1e-68, score=262)">
      <seq>gcaaagaactgtctatcgtttgacactcgttaaagggtggaacacagaagatgtggatgcatattctagcctattcagcattgggaaacccgatttcattgaaatcaaaggtgtcacttattgtggaacgtcggctacatcaaagttgacaatggagaatgtcccttggcattctgatgtgaaggaattctctgaagccttggctaaaaagagcaacggagagtatgaagttgcctgtgagcacgtgcattcctgctgtgttcttctggctaaagtccataagttcaaaatagacgggcaatgggtcacgtggatagactaccaaaaattccatgatctggtaacttctgggaaaccccttaccagtaaagaatacctgacacccaccccatcttgggctggctattgaactgaagaaagggggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="132038" stop="130989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131738" g_stop="131610" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131609" i_stop="131502" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131501" g_stop="131291" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="340" r_length="211" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131290" i_stop="131188" i_length="103">
            <donor d_prob="0.828" d_score="0.90"/>
            <acceptor a_prob="0.508" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131187" g_stop="131102" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="426" r_length="86" r_score="0.837"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-U336990" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131738" e_stop="131610"/>
          <exon e_start="131501" e_stop="131291"/>
          <exon e_start="131187" e_stop="131102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAACGTAAGTTTTCCCCCTCCCCCTCACTTTTTTCCTTTCCCCTCCCTCTTCTCTTCTACTAGTTTATCCGATTTCAAAGTTCAGTTAAGCAATCAGGGAGGTTTGACACAGGTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGAGAGTATGAGGTTGCCTGTGAGCATGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTCGCTAAGTTCAAAATAGACGGTCAATGGTTCACGTGGATAGACTACGAGAAGTTCCATGATCTGGTTGGTTACTTCTCTTGTTCATACCTCAGCACGTAAATTATAAGCATACCCTTCCCATTTCAATAGCGTAATCAATGTTTTTTAATCCCATGGCGCGCTACAGGTAGCTTCTGGGAAACCCTTTACAAGTAAAGATTACATGACACCTACACCATCTTGGGCTGTCTATGGAGCTGAGGAAGGTGGTTT</genome_strand>
        <mrna_strand>GCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAAC............................................................................................................GTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGAGAGTATGAAGTTGCCTGTGAGCACGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTCCATAAGTTCAAAATAGACGGGCAATGGGTCACGTGGATAGACTACCAAAAATTCCATGATCTG.......................................................................................................GTAACTTCTGGGAAACCCCTTACCAGTAAAGAATACCTGACACCCACCCCATCTTGGGCTGGCTATTGAACTGAAGAAAGGGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339365" ref_strand="+" ref_description="SGN-U339365        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:7121486-7123179 FORWARD | Aliases: MQC12.22(evalue: 5e-26, score=115) genbank/nr: gi|15231142|ref|NP_188678.1| expressed protein [Arabidopsis thaliana] gi|9294563|dbj|BAB02826.1| gene_id:MQC12.22~unknown protein [Arabidopsis thaliana] gi|25054915|gb|AAN71936.1| unknown protein [Arabidopsis thaliana](evalue: 4e-24, score=115)">
      <seq>ggaagctttggcactaaacccatcagcattcttccccgaaaaaagttccttcaaaaaccctatctgataaacccatctaatccagaaggcaattgcaagctctcaacaaggagaactcgttttttctcttattcaatggagctagaggatagcattttaaacttctctgatgaagacgagagctttgaggatgacgaagatgttaaaatgaatgatattgaggaaggagaactagttgagaagatctccaagactggattagaggaaactggtggtgtatgtgccagctctgaaaatcctcttccaggtaaaaaaaatcggagacggaggaggaacaagagaaagaacaaaagcaagagagtttcttcaggtccaatcacagacattaacagatttgttttggatgtcggaagacgcttgaaagagaggaaatcttatcttatatggaatgctgttggttgtctcggcctatctgctttgagtgatcttgttaaagagatgcctcctggtgaagcctttttcactcctttcagtctcatggacctttcttccaagatagcttctggcggaacttctttgtggtgtctatttggattgattccaatgtttttgcctgtctttgttgttttaccccatggtggatgcaattcagacttgtggtggccagaagactgctgatggcaggcgtttccgaacaggtggtggaatattgtggagcatccttaaagtacgagatccaaatgcatacaaagagataatgaagaaagggaaggagtttgagaagcagtttaggcaggctaatctcaagcaagaaccgctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="136484" stop="140513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136783" g_stop="136901" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136902" i_stop="137359" i_length="458">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137360" g_stop="137632" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="392" r_length="273" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137633" i_stop="138033" i_length="401">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138034" g_stop="138139" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="498" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138140" i_stop="138849" i_length="710">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="138850" g_stop="138988" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="637" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="138989" i_stop="139356" i_length="368">
            <donor d_prob="0.624" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139357" g_stop="139500" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="781" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="139501" i_stop="140172" i_length="672">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="140173" g_stop="140213" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="822" r_length="41" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U339365" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136783" e_stop="136901"/>
          <exon e_start="137360" e_stop="137632"/>
          <exon e_start="138034" e_stop="138139"/>
          <exon e_start="138850" e_stop="138988"/>
          <exon e_start="139357" e_stop="139500"/>
          <exon e_start="140173" e_stop="140213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCTTTGGCACTAAACCCATCAGCATTCTTCCCCGAAAAAAGTTCCTTCAAAAACCCTACCTGTAAAACCCATCTAACCCAGAAGGTAATTGCAAGCTCTCAACAAGGAGAACTCGGTAAGGGTTCGATTCGTTTTCGTCTTTTTTTACTTTCATCAAATCTCTGTATTAAACCTAGAATCTGTATCTTGCCGTCTGTTGCATTTTTCAAACCAAATTGATATTCCCATTTATAAAAATTCATTTTTTCATCCATGTTATATATATTGAATTTCTACGGTATAAATCGAATGGGTAGGTTGAGAACTGAGATGCTTTGTTACTGATTGGAGAATCAATTGAGGCTTGCTCAAGTGGTTGAGCACCTCCACCATCCCTAGGTAATTGAGGGTTCGAGTTACTTGGGAGAGTAAGTTAGAACACTGTTGATACTCCGTCAGTGGAGTGGGGAAACAAATCAGTTAGTCATGTTATAGAGATATTTATGACCTGTAACTCTTTGCTGTAAAAGGTAGTGTCTTTGCTGTGATTCTTTTGGTGATGTAGAGGAATAATATTTCATTAATCTCGTGCAGGTTTTTCTCTAATTCAATGGAGCTAGAGGATAGCATTTTAAACTTCTCTGATGAAGACGAGAGCTTTGAGGATGATGAAGATGTTAAAATGAATGATATTGAGGAAGGAGAACTAGTTGAGAAGATCTCCAAGACTGGATTAGAGGAAACTGGTGATGTATGTGCCAGCTCTGAAAATCCTCTTCCAGGTAAAAAAAATCGGAGACGGAGGAAGAACAAGGGAAAGAACAAAAGCAAGAGAGTTTCTTCAGGTCCAATCACAGACATTAACAGGTTTGTTATGCTAATCATAGTTGTTATATCATGATTACCCAGTGCATACTATTTTTATTTCTATGGTGAAAGCAGTATTGTGCGTGGACTCGGGGCATACAGTTGGATATAGTTAACAAGATGATTGCCTTAGTGTAATCAAGGGAAGATGACTGATGCATAGGTTTATTTGCTTTGTTAATTTTACTATATGTCCCAGTTAATATTCGTTCCTTTGGTTTGCGAAGTGATCTCATGGAATTTTGTATTGCTATCTACAACTCTGTCGCTGTTGTGTCAAAGGTTAACACTTTGGTCTAAGTTGCTTCAATTTGTATACCCTTGTCTGTTACACGAATTTGCATCTTTTTCTCTGTTGTATTAGGCTCTGAATTTTCTGTCTTTGAAATTTTTGACTTTAGATTTGTTTTGGATGTCGGAAGACGCTTGAAAGAGAGGAAATCTTATCTTATATGGAATGCTGTTGGTTGTCTCGGCCTATCTGCTTTGAGTGATCTTGTTAAAGAGGTATGCCTTTTGTTCTGCACGCTTGTTTTCTTGAAGGATGATTTTTGCTTGTCAAATTCCTTGATGGCTTTACTGATAAGCTTAATTTTGTATTTAGACAGTAGTGTTGGCATAACTTCACCAAAATGCCCCCAACCCAAATAAACTTAATGAATAAGTTGGTCTTTTTGTAGCACAGACCCACAGATTCGAATTTTTGAGTTGGTAAGGTCATAGATGACAAATCAATTTCACTTTTTAAAGTTACCCTTATCTAAGAAAAAAACAAAAAACAAATCAACTTCACTTCTGTTTGGAGTAATACTTGTGTTTATCAGGATAACTATCTTATGAATAGCAACATTACTATTTATTTCCAATGCAAATGATTTTTACTGTCTTGGAAGGCATTGCATTCTCGATGGGGAGCGTGAAATTTAAACCAAATACCTTTATTAGCCTCAGAACCACTTGCCATCCCCTAGTTCATATTCGCTAAAGCTCATGGGCCTTCCATCTCCATGTTGGTGCCAATAACATTGATCTTCTCTTTATTTTCTTGTTACCAGAGATTGGGCATTCTAGAATTATTTACCCCTTGGTTTTGGCTAGATTGAGAATTATTCAGTGATTGCTAAGAGGTAAAGGATGGGCCTAACTCTTAACACGATTTCTTTAAGGTCTAATATTTTTTGTAGTTTCTGATGCTCAATGTTGTAATACACTCACAGATGCCTCCTGGTGAAGCCTTTTTCACTCCTTTCAGTCTCATGGACCTTTCTTCCAAGATAGCTTCTGCCGGAACTACTTTGTGGTGTCTATTTGGATTGATTCCAATGTTTTTGCCTGTCTTTGTTGTTTTACCCCATGGTATGCACATAACAATGCAATATGCTGAAATTTTGCATCTTTTTCCTGTTTCTTTTTTTCCTTTTTGTTTTTTTTTTCTTATGGGAATCAGAGGGTTGATTGAGAAGTAGAGAAAGTATTTTAGAAAGTAAGTGGGAACAATAGGAGCTCTGAGTTTAAGTAGTGAAAATTATTTGTGTATTAATTTGACAAATAATGGGCATTTTGTGTTTCCCCCAAGTTAGCTAGAACCTCTTGCTTGCTGCCTCTCCTCTTCTTCTCTTTTTCCCTTTTCCTCGAGGGAGATATTGCTTGTTTGAACCCATTTTATATGATTTTTGAGTTCTCCAATTATGAGTCAGCTGATGATGATGTTGTAAACTTTAAAGGTGGATGCAATTCAGACTTGTGGCGGCCAGAAGACTGCTGATGGCAGGCGTTTCCGAACAGGTGGTGGAATATTGTGGAGCATCCTTAAAGTACGAGATCCAAATGCATACAAAGAGATAATGAAGAAAGGGAAGGAGTTTGAGGTGGGTCATTATTCTTACGCATTATTAGTACTTATTTATCCCCAGTGCATCTGGCAGTTTTATTGCTCAACCTGGAAACTAGGTAGTTACCATCATTGATCATGAATTTTCCATTGTTGGGATCAGTAAGCATGAAGGTAATTGACAATGCTGAAGGTTTTTGTTCTATCTCAAAACAAACGAGAAAAATTAAAGCAGGTTAACCTTAAAAAAAGGAAAGAACCTTTAGTGAAGGCCTTATGGAGGTGCTTTTGTATATAATTTATTTTGACTGTGCATTGCAGTATTCATTGCAAGACAAATATAATGCTATTACCCACGTATATTTTCTCATTGCTCCGTTGAGATGCCCTAAATTTTGCGCTGTCTATTTGGATGTGTTAAAATTTTGAATTTCAAGTGATTATCTTACTGTGGATCATTTTCTCAAAATCAAAATGCATATTATTGGGTAAAATCCCCTATCCCTTGGGTAGCCACGGTCATTTCTAGTTGCGAGGACAATACTCTCCCATCAAAATTGTGAATCTCTGTTTGCTGATTGTTATTTTTCTTAAGACTAATTCCAACTTAGTATGCTGTGTATCCTAAACAATTGCATTCATAATTTGAACTGTTGATCTGCTAGTTGCTATTTTCCTTCCAGTGCTCATTAAGAACTTAATCTTGCAGAAGCAGTTTAGGCAGGCTAATCTCAAGCAAGAACCCCTCCA</genome_strand>
        <mrna_strand>GGAAGCTTTGGCACTAAACCCATCAGCATTCTTCCCCGAAAAAAGTTCCTTCAAAAACCCTATCTGATAAACCCATCTAATCCAGAAGGCAATTGCAAGCTCTCAACAAGGAGAACTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTCTCTTATTCAATGGAGCTAGAGGATAGCATTTTAAACTTCTCTGATGAAGACGAGAGCTTTGAGGATGACGAAGATGTTAAAATGAATGATATTGAGGAAGGAGAACTAGTTGAGAAGATCTCCAAGACTGGATTAGAGGAAACTGGTGGTGTATGTGCCAGCTCTGAAAATCCTCTTCCAGGTAAAAAAAATCGGAGACGGAGGAGGAACAAGAGAAAGAACAAAAGCAAGAGAGTTTCTTCAGGTCCAATCACAGACATTAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTTTTGGATGTCGGAAGACGCTTGAAAGAGAGGAAATCTTATCTTATATGGAATGCTGTTGGTTGTCTCGGCCTATCTGCTTTGAGTGATCTTGTTAAAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTCCTGGTGAAGCCTTTTTCACTCCTTTCAGTCTCATGGACCTTTCTTCCAAGATAGCTTCTGGCGGAACTTCTTTGTGGTGTCTATTTGGATTGATTCCAATGTTTTTGCCTGTCTTTGTTGTTTTACCCCATG................................................................................................................................................................................................................................................................................................................................................................................GTGGATGCAATTCAGACTTGTGGTGGCCAGAAGACTGCTGATGGCAGGCGTTTCCGAACAGGTGGTGGAATATTGTGGAGCATCCTTAAAGTACGAGATCCAAATGCATACAAAGAGATAATGAAGAAAGGGAAGGAGTTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGTTTAGGCAGGCTAATCTCAAGCAAGAACCGCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329355" ref_strand="+" ref_description="SGN-U329355        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:7121486-7123179 FORWARD | Aliases: MQC12.22(evalue: 6e-39, score=146) genbank/nr: unknown(evalue: 1e-37, score=154)">
      <seq>aaaaagttccttcaaaaaccctacctgtaaaacccatctaacccagaaggtaattgcaagctctcaacaaggagaactcggtttttctctaattcaatggagctagaggatagcattttaaacttctctgatgaagacgagagctttgaggatgatgaagatgttaaaatgaatgatattgaggaaggagaactagttgagaagatctccaagactggattagaggaaactggtgatgtatgtgccagctctgaaaatcctcttccaggtaaaaaaaatcggagacggaggaagaacaagggaaagaacaaaagcaagagagtttcttcaggtccaatcacagacattaacagatttgttttggatgtcggaagacgcttgaaagagaggaaatcttatcttatatggaatgctgttggttgtctcggcctatctgctttgagtgatcttgttaaagaggtggatgcaattcagacttgtggcggccagaagactgctgatggcaggcgtttccgaacaggtggtggaatattgtggagcatccttaaagtacgagatccaaatgcatacaaagagataatgaagaaagggaaggagtttgagaagcagtttaggcaggctaatctcaagcaagaacccctccaaaacaaagaagcttctcttggagagatctagtcagacaataggagacgagattacagccagttgttcagatgttttgctgcagcaagaacctgttgaacagtctaatagtggagccaaacgtgcatctgttcatgatagaataaggatgcctgtcacgtatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="+" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="136522" stop="140679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136822" g_stop="136901" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136902" i_stop="137359" i_length="458">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137360" g_stop="137632" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="353" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137633" i_stop="138033" i_length="401">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138034" g_stop="138139" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="459" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138140" i_stop="139356" i_length="1217">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="139357" g_stop="139500" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="603" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="139501" i_stop="140172" i_length="672">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="140173" g_stop="140379" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="811" r_length="208" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="+" ref_id="SGN-U329355" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136822" e_stop="136901"/>
          <exon e_start="137360" e_stop="137632"/>
          <exon e_start="138034" e_stop="138139"/>
          <exon e_start="139357" e_stop="139500"/>
          <exon e_start="140173" e_stop="140379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTCCTTCAAAAACCCTACCTGTAAAACCCATCTAACCCAGAAGGTAATTGCAAGCTCTCAACAAGGAGAACTCGGTAAGGGTTCGATTCGTTTTCGTCTTTTTTTACTTTCATCAAATCTCTGTATTAAACCTAGAATCTGTATCTTGCCGTCTGTTGCATTTTTCAAACCAAATTGATATTCCCATTTATAAAAATTCATTTTTTCATCCATGTTATATATATTGAATTTCTACGGTATAAATCGAATGGGTAGGTTGAGAACTGAGATGCTTTGTTACTGATTGGAGAATCAATTGAGGCTTGCTCAAGTGGTTGAGCACCTCCACCATCCCTAGGTAATTGAGGGTTCGAGTTACTTGGGAGAGTAAGTTAGAACACTGTTGATACTCCGTCAGTGGAGTGGGGAAACAAATCAGTTAGTCATGTTATAGAGATATTTATGACCTGTAACTCTTTGCTGTAAAAGGTAGTGTCTTTGCTGTGATTCTTTTGGTGATGTAGAGGAATAATATTTCATTAATCTCGTGCAGGTTTTTCTCTAATTCAATGGAGCTAGAGGATAGCATTTTAAACTTCTCTGATGAAGACGAGAGCTTTGAGGATGATGAAGATGTTAAAATGAATGATATTGAGGAAGGAGAACTAGTTGAGAAGATCTCCAAGACTGGATTAGAGGAAACTGGTGATGTATGTGCCAGCTCTGAAAATCCTCTTCCAGGTAAAAAAAATCGGAGACGGAGGAAGAACAAGGGAAAGAACAAAAGCAAGAGAGTTTCTTCAGGTCCAATCACAGACATTAACAGGTTTGTTATGCTAATCATAGTTGTTATATCATGATTACCCAGTGCATACTATTTTTATTTCTATGGTGAAAGCAGTATTGTGCGTGGACTCGGGGCATACAGTTGGATATAGTTAACAAGATGATTGCCTTAGTGTAATCAAGGGAAGATGACTGATGCATAGGTTTATTTGCTTTGTTAATTTTACTATATGTCCCAGTTAATATTCGTTCCTTTGGTTTGCGAAGTGATCTCATGGAATTTTGTATTGCTATCTACAACTCTGTCGCTGTTGTGTCAAAGGTTAACACTTTGGTCTAAGTTGCTTCAATTTGTATACCCTTGTCTGTTACACGAATTTGCATCTTTTTCTCTGTTGTATTAGGCTCTGAATTTTCTGTCTTTGAAATTTTTGACTTTAGATTTGTTTTGGATGTCGGAAGACGCTTGAAAGAGAGGAAATCTTATCTTATATGGAATGCTGTTGGTTGTCTCGGCCTATCTGCTTTGAGTGATCTTGTTAAAGAGGTATGCCTTTTGTTCTGCACGCTTGTTTTCTTGAAGGATGATTTTTGCTTGTCAAATTCCTTGATGGCTTTACTGATAAGCTTAATTTTGTATTTAGACAGTAGTGTTGGCATAACTTCACCAAAATGCCCCCAACCCAAATAAACTTAATGAATAAGTTGGTCTTTTTGTAGCACAGACCCACAGATTCGAATTTTTGAGTTGGTAAGGTCATAGATGACAAATCAATTTCACTTTTTAAAGTTACCCTTATCTAAGAAAAAAACAAAAAACAAATCAACTTCACTTCTGTTTGGAGTAATACTTGTGTTTATCAGGATAACTATCTTATGAATAGCAACATTACTATTTATTTCCAATGCAAATGATTTTTACTGTCTTGGAAGGCATTGCATTCTCGATGGGGAGCGTGAAATTTAAACCAAATACCTTTATTAGCCTCAGAACCACTTGCCATCCCCTAGTTCATATTCGCTAAAGCTCATGGGCCTTCCATCTCCATGTTGGTGCCAATAACATTGATCTTCTCTTTATTTTCTTGTTACCAGAGATTGGGCATTCTAGAATTATTTACCCCTTGGTTTTGGCTAGATTGAGAATTATTCAGTGATTGCTAAGAGGTAAAGGATGGGCCTAACTCTTAACACGATTTCTTTAAGGTCTAATATTTTTTGTAGTTTCTGATGCTCAATGTTGTAATACACTCACAGATGCCTCCTGGTGAAGCCTTTTTCACTCCTTTCAGTCTCATGGACCTTTCTTCCAAGATAGCTTCTGCCGGAACTACTTTGTGGTGTCTATTTGGATTGATTCCAATGTTTTTGCCTGTCTTTGTTGTTTTACCCCATGGTATGCACATAACAATGCAATATGCTGAAATTTTGCATCTTTTTCCTGTTTCTTTTTTTCCTTTTTGTTTTTTTTTTCTTATGGGAATCAGAGGGTTGATTGAGAAGTAGAGAAAGTATTTTAGAAAGTAAGTGGGAACAATAGGAGCTCTGAGTTTAAGTAGTGAAAATTATTTGTGTATTAATTTGACAAATAATGGGCATTTTGTGTTTCCCCCAAGTTAGCTAGAACCTCTTGCTTGCTGCCTCTCCTCTTCTTCTCTTTTTCCCTTTTCCTCGAGGGAGATATTGCTTGTTTGAACCCATTTTATATGATTTTTGAGTTCTCCAATTATGAGTCAGCTGATGATGATGTTGTAAACTTTAAAGGTGGATGCAATTCAGACTTGTGGCGGCCAGAAGACTGCTGATGGCAGGCGTTTCCGAACAGGTGGTGGAATATTGTGGAGCATCCTTAAAGTACGAGATCCAAATGCATACAAAGAGATAATGAAGAAAGGGAAGGAGTTTGAGGTGGGTCATTATTCTTACGCATTATTAGTACTTATTTATCCCCAGTGCATCTGGCAGTTTTATTGCTCAACCTGGAAACTAGGTAGTTACCATCATTGATCATGAATTTTCCATTGTTGGGATCAGTAAGCATGAAGGTAATTGACAATGCTGAAGGTTTTTGTTCTATCTCAAAACAAACGAGAAAAATTAAAGCAGGTTAACCTTAAAAAAAGGAAAGAACCTTTAGTGAAGGCCTTATGGAGGTGCTTTTGTATATAATTTATTTTGACTGTGCATTGCAGTATTCATTGCAAGACAAATATAATGCTATTACCCACGTATATTTTCTCATTGCTCCGTTGAGATGCCCTAAATTTTGCGCTGTCTATTTGGATGTGTTAAAATTTTGAATTTCAAGTGATTATCTTACTGTGGATCATTTTCTCAAAATCAAAATGCATATTATTGGGTAAAATCCCCTATCCCTTGGGTAGCCACGGTCATTTCTAGTTGCGAGGACAATACTCTCCCATCAAAATTGTGAATCTCTGTTTGCTGATTGTTATTTTTCTTAAGACTAATTCCAACTTAGTATGCTGTGTATCCTAAACAATTGCATTCATAATTTGAACTGTTGATCTGCTAGTTGCTATTTTCCTTCCAGTGCTCATTAAGAACTTAATCTTGCAGAAGCAGTTTAGGCAGGCTAATCTCAAGCAAGAACCCCTCCAAAACAAAGAAGCTTCT-TTGGAGAGATCTAGTCAGACAATAGGAGACGAGATTACAGCCAGTTGTTCAGATGTTTTGCTGCAGCAAGAACCTGTTGAACAGTCTAATAGTGGAGCCAAACGTGCATCTGTTCATGATAGAATAAGGATGCCTGTCACGTATGATGAT</genome_strand>
        <mrna_strand>AAAAAGTTCCTTCAAAAACCCTACCTGTAAAACCCATCTAACCCAGAAGGTAATTGCAAGCTCTCAACAAGGAGAACTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTCTCTAATTCAATGGAGCTAGAGGATAGCATTTTAAACTTCTCTGATGAAGACGAGAGCTTTGAGGATGATGAAGATGTTAAAATGAATGATATTGAGGAAGGAGAACTAGTTGAGAAGATCTCCAAGACTGGATTAGAGGAAACTGGTGATGTATGTGCCAGCTCTGAAAATCCTCTTCCAGGTAAAAAAAATCGGAGACGGAGGAAGAACAAGGGAAAGAACAAAAGCAAGAGAGTTTCTTCAGGTCCAATCACAGACATTAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTTTTGGATGTCGGAAGACGCTTGAAAGAGAGGAAATCTTATCTTATATGGAATGCTGTTGGTTGTCTCGGCCTATCTGCTTTGAGTGATCTTGTTAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGCAATTCAGACTTGTGGCGGCCAGAAGACTGCTGATGGCAGGCGTTTCCGAACAGGTGGTGGAATATTGTGGAGCATCCTTAAAGTACGAGATCCAAATGCATACAAAGAGATAATGAAGAAAGGGAAGGAGTTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGTTTAGGCAGGCTAATCTCAAGCAAGAACCCCTCCAAAACAAAGAAGCTTCTCTTGGAGAGATCTAGTCAGACAATAGGAGACGAGATTACAGCCAGTTGTTCAGATGTTTTGCTGCAGCAAGAACCTGTTGAACAGTCTAATAGTGGAGCCAAACGTGCATCTGTTCATGATAGAATAAGGATGCCTGTCACGTATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324496" ref_strand="+" ref_description="SGN-U324496        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G19430.1 | Symbol: None | dehydration-responsive protein-related, low similarity to early-responsive to dehydration stress ERD3 protein (Arabidopsis thaliana) GI:15320410; contains Pfam profile PF03141: Putative methyltransferase | chr1:6724564-6728031 REVERSE | Aliases: F18O14.20, F18O14_20 (evalue: 7e-104, score=365) genbank/nr: gi|18394738|ref|NP_564084.1| dehydration-induced protein-related [Arabidopsis thaliana] gi|8778438|gb|AAF79446.1| F18O14.20 [Arabidopsis thaliana] gi|15810125|gb|AAL07206.1| unknown protein [Arabidopsis thaliana] gi|25054951|gb|AAN71952.1| unknown protein [Arabidopsis thaliana](evalue: 5e-102, score=365)">
      <seq>aaggaaagaagttccacctctatgcaaagcaaatgagaacccagatgcatctctggtatgtgccgattaaatcttgcttgcacacaattcctgaatccatagaacaaagaggaaccgaatggcctgaggagtggcctaagagacttgaaacttatcccgaatggatgaacaatagagagaaattgatcgcagacagtgagcactggaaagctattgttgaccattcttatttagttggcttgggtattgaatggtccaacattcggaatgtaatggatatgaaagccatcaatggaggatttgcagcagctcttgcacagcaaaaggtgtgggtgatgaatgttattcctgtacatgcaccaaacacccttcccgtagtctttgaaagaggacttattggcgtgtaccacgattggtgtgaggcttttggtacttatccaagatcatacgaccttctacatgcagatcatctcttctcaaggcttaagaacaggtgcaagcatcccattgtgattgtggttgagatggaccgtatattacggcctggtggctggggaatcatacgtgacaaggtcgaaatacttgatccattagagaaaatattgagaagcttgcactgggagatacgaatgacttttgccaaagataaggaaggcatcctttgtgctcagaagacaatgtggagaccttgatgaatgcttagaagcaagtcatttgattatttggactacagattccagtcattttcctgctggttatctatacacagtgccattcttgccaacaattgtgttccctgttcacatattgcaaaagaaattgtcgtggatccagaatttagacgttgtgagtattgagttcggaaatgtatacaaagatttaattcattgttggatcatctttgaaaggaaagtattttccaacaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="144089" stop="141813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143789" g_stop="143736" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143735" i_stop="143517" i_length="219">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143516" g_stop="143274" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="298" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="143273" i_stop="143156" i_length="118">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143155" g_stop="142961" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="493" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="142960" i_stop="142546" i_length="415">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="142545" g_stop="142114" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="925" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="926" polyA_stop="948"/>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-U324496" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>924</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143789" e_stop="143736"/>
          <exon e_start="143516" e_stop="143274"/>
          <exon e_start="143155" e_stop="142961"/>
          <exon e_start="142545" e_stop="142114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAAAAAGTTCCACCTCTATGCAAAGCAAATGAGAACCCAGATGCATC-CTGGTGAGTTGGAAAAGCTTGTGTTGTTATACTTGTTCTCTTTTCGGTCAATTTGCATTTCCTTTACACATACTTCCGCTACTGTGCATGTGCGAGTAATCTTGGGAAAATAAGTGCACAACTCCATCATTGTATGTCATCACACAAATAAGCTACACTTCTCTCAGAAGTGGTAGAATAAGCATGATTTATGATAAATTCCAATTACCTTGTCTGCAACAGGTATGTGCCGATTAAATCTTGCTTGCACACAATTCCTGAATCCATAGAACAAAGAGGAACCGAATGGCCTGAGGAGTGGCCTAAGAGACTTGAAACTTATCCCGAATGGATGAACAATAGAGAGAAATTGATCGCAGACAGTGAGCACTGGAAAGCTATTGTTGACCATTCTTATTTAGTTGGCTTGGGTATTGAATGGTCCAACATTCGGAATGTAATGGATATGAAAGCCATCAATGGAGGGTAAGCCCCTAGCTTTGGTTAATCTGATGTTAGAGGCTCAAACATTAAAATGTTATTGGCTCTCCCTCTTCTTTTAATTGTAATATTGTGCCTCGGCAACTGAGAAAAATATACACAGATTTGCAGCAGCTCTTGCACAGCAGAAGGTGTGGGTGATGAATGTTATTCCTGTACATGCACCAAACACCCTTCCCGTAGTCTTTGAAAGAGGACTTATTGGCGTGTACCACGATTGGTGTGAGGCTTTTGGTACTTATCCAAGATCATACGACCTTCTACATGCAGATCATCTCTTCTCAAGGCTTAAGAACAGGTTACATGACCTTTTCTCCTTTATTTGCTCCTCTGTTTCAGTTTTCCCCTCATAAAACATATGCATGATCCTGTCTTTCTTGATTATGAATCAAAACGAAAAGTCGGATGTACTTGTTCAGTTCAGGTCTACTTATATGATCATTCTTCTATCTGAAAAAAAAGAAAGAATATTGCTTTAAAAAGGTGACTCATAGTCCCTTTTCGAGTATTATTAATCCAGTCGGTGTGTATAAGAACGAACAGTTTCCACCTCTTTTTGGGCTATATTCCCTTGTTTTCCCCCATACCCCCTTTCAGCAAGGGTTTTGAAAAATCTTCTTCCGACCTCTGGAGGTGGTCTGTAAAGTTTGAAACTTTCCATTTCCAGACTTCAAATTTTCTTCATAGCTAATTAAGTGGTTCATTCACTGCAGGTGCAAGCATCCCATTGTGATTGTGGTTGAGATGGACCGTATATTACGGCCTGGTGGCTGGGGAATCATACGTGACAAGGTCGAAATACTTGATCCATTAGAGAAAATATTGAGAAGCTTGCACTGGGAGATACGAATGACTTTTGCCAAAGATAAGGAAGGCATCCTTTGTGCTCAGAAGACAATGTGGAGACCTTGATGAATGCTTAGAAGCAAGTCATCTGATTATTTGGACTACAGATTCCAGTCATTTTCCTGCTGGTTATCTATACACAGTGCCATTCTTGCCAACAATTGTGTTCCCTGTTCACATATTGCAAAAGAAATTGTCGTGGATCCAGAATTTAGACGTTGTGAGTATTGAGTTCGGAAATGTATACAAAGATTTAATTCATTGTTGGATCATCTCTGAAAGGAAAGTATTTTCCAACA</genome_strand>
        <mrna_strand>AAGGAAAGAAGTTCCACCTCTATGCAAAGCAAATGAGAACCCAGATGCATCTCTG...........................................................................................................................................................................................................................GTATGTGCCGATTAAATCTTGCTTGCACACAATTCCTGAATCCATAGAACAAAGAGGAACCGAATGGCCTGAGGAGTGGCCTAAGAGACTTGAAACTTATCCCGAATGGATGAACAATAGAGAGAAATTGATCGCAGACAGTGAGCACTGGAAAGCTATTGTTGACCATTCTTATTTAGTTGGCTTGGGTATTGAATGGTCCAACATTCGGAATGTAATGGATATGAAAGCCATCAATGGAGG......................................................................................................................ATTTGCAGCAGCTCTTGCACAGCAAAAGGTGTGGGTGATGAATGTTATTCCTGTACATGCACCAAACACCCTTCCCGTAGTCTTTGAAAGAGGACTTATTGGCGTGTACCACGATTGGTGTGAGGCTTTTGGTACTTATCCAAGATCATACGACCTTCTACATGCAGATCATCTCTTCTCAAGGCTTAAGAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCATCCCATTGTGATTGTGGTTGAGATGGACCGTATATTACGGCCTGGTGGCTGGGGAATCATACGTGACAAGGTCGAAATACTTGATCCATTAGAGAAAATATTGAGAAGCTTGCACTGGGAGATACGAATGACTTTTGCCAAAGATAAGGAAGGCATCCTTTGTGCTCAGAAGACAATGTGGAGACCTTGATGAATGCTTAGAAGCAAGTCATTTGATTATTTGGACTACAGATTCCAGTCATTTTCCTGCTGGTTATCTATACACAGTGCCATTCTTGCCAACAATTGTGTTCCCTGTTCACATATTGCAAAAGAAATTGTCGTGGATCCAGAATTTAGACGTTGTGAGTATTGAGTTCGGAAATGTATACAAAGATTTAATTCATTGTTGGATCATCTTTGAAAGGAAAGTATTTTCCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329240" ref_strand="+" ref_description="SGN-U329240        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT1G19430.1 | Symbol: None | dehydration-responsive protein-related, low similarity to early-responsive to dehydration stress ERD3 protein (Arabidopsis thaliana) GI:15320410; contains Pfam profile PF03141: Putative methyltransferase | chr1:6724564-6728031 REVERSE | Aliases: F18O14.20, F18O14_20 (evalue: 1e-15, score=80.5) genbank/nr: gi|18394738|ref|NP_564084.1| dehydration-induced protein-related [Arabidopsis thaliana] gi|8778438|gb|AAF79446.1| F18O14.20 [Arabidopsis thaliana] gi|15810125|gb|AAL07206.1| unknown protein [Arabidopsis thaliana] gi|25054951|gb|AAN71952.1| unknown protein [Arabidopsis thaliana](evalue: 8e-14, score=80.5)">
      <seq>tcaattctctcttgagctgccaagattcttgttttggggtaaaaaaagattgttgcttttgttgtttatatggaattctgatttctgggtatgtctcaggtttttgtttgagttagaaatgaggaagcacaacacagctttaacaagatttgggagaaaggtaaaaggttcatatcaatcttatggtcttggtgttaagttagctgcagtagtaattttgggtctttgttttgtattcatttggtctgtgttttcaccttcttcttattcagtagcctatcaaagggacacttttgatgatattagagaacctatttcatctgcaaataggaaaaaggttacacctttagttccttcaactaagaaagaacaaccccataataagaaactgaaacatagatcaagttctggtgagaaaaagaagagggttgataggtcttctttgccttcaaaatctggtggttggcataagaatgataaaagtggagttgataggaagagaaaaggtgaggatctgaagttacccgaaaaggttgatgaggtgaaggaacaagaattggaaggatctgaaactgatgtgttggagaaggagaatgaggaagacaaaataggaaatgataagcaagaagaagagaaaaaagtagttgaagttaaagagaatgagaaagaaaaaacagaaaataatagtaaacaagaaggagaaggagtggatggtaaagagaatgagaaagaggaaatagaaagtactaaagaagaagaaggagaaggagaangagaaggaacagtagatggtaatgaaggtaatggtgaaatagctaatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0075G11-Q3h0n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0075G11.1" temp_strand="-" temp_description="C04HBa0075G11.1  CU459062.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0075G11 sequenced_by:sanger upload_account_name:uk">
        <position start="147277" stop="145854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146977" g_stop="146154" g_length="824"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="824" r_length="824" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0075G11.1" gen_strand="-" ref_id="SGN-U329240" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0075G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146977" e_stop="146154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCTCTCTTGAGCTGCCAAGATTCTTGTTTTGGGGTAAAAAAAGATTGTTGCTTTTGTTGTTTATATGGAATTCTGATTTCTGGGTATGTCTCAGGTTTTTGTTTGAGTTAGAAATGAGGAAGCACAACACAGCTTTAACAAGATTTGGGAGAAAGGTAAAAGGTTCATATCAATCTTATGGTCTTGGTGTTAAGTTAGCTGCAGTAGTAATTTTGGGTCTTTGTTTTGTATTCATTTGGTCTGTGTTTTCACCTTCTTCTTATTCAGTAGCCTATCAAAGGGACACTTTTGATGATATTAGAGAACCTATTTCATCTGCAAATAGGAAAAAGGTTACACCTTTAGTTCCTTCAACTAAGAAAGAACAACCCCATAATAAGAAACTGAAACATAGATCAAGTTCTGGTGAGAAAAAGAAGAGGGTTGATAGGTCTTCTTTGCCTTCAAAATCTGGTGGTTGGCATAAGAATGATAAAAGTGGAGTTGATAGGAAGAGAAAAGGTGAGGATCTGAAGTTACCCGAAAAGGTTGATGAGGTGAAGGAACAAGAATTGGAAGGATCTGAAACTGATGTGTTGGAGAAGGAGAATGAGGAAGACAAAATAGGAAATGATAAGCAAGAAGAAGAGAAAAAAGTAGTTGAAGTTAAAGAGAATGAGAAAGAAAAAACAGAAAATAATAGTAAACAAGAAGGAGAAGGAGTGGATGGTAAAGAGAATGAGAAAGAGGAAATAGAAAGTACTAAAGAAGAAGAAGGAGAAGGAGAAGGAGAAGGAACAGTAGATGGTAATGAAGGTAATGGTGAAATAGCTAATACTG</genome_strand>
        <mrna_strand>TCAATTCTCTCTTGAGCTGCCAAGATTCTTGTTTTGGGGTAAAAAAAGATTGTTGCTTTTGTTGTTTATATGGAATTCTGATTTCTGGGTATGTCTCAGGTTTTTGTTTGAGTTAGAAATGAGGAAGCACAACACAGCTTTAACAAGATTTGGGAGAAAGGTAAAAGGTTCATATCAATCTTATGGTCTTGGTGTTAAGTTAGCTGCAGTAGTAATTTTGGGTCTTTGTTTTGTATTCATTTGGTCTGTGTTTTCACCTTCTTCTTATTCAGTAGCCTATCAAAGGGACACTTTTGATGATATTAGAGAACCTATTTCATCTGCAAATAGGAAAAAGGTTACACCTTTAGTTCCTTCAACTAAGAAAGAACAACCCCATAATAAGAAACTGAAACATAGATCAAGTTCTGGTGAGAAAAAGAAGAGGGTTGATAGGTCTTCTTTGCCTTCAAAATCTGGTGGTTGGCATAAGAATGATAAAAGTGGAGTTGATAGGAAGAGAAAAGGTGAGGATCTGAAGTTACCCGAAAAGGTTGATGAGGTGAAGGAACAAGAATTGGAAGGATCTGAAACTGATGTGTTGGAGAAGGAGAATGAGGAAGACAAAATAGGAAATGATAAGCAAGAAGAAGAGAAAAAAGTAGTTGAAGTTAAAGAGAATGAGAAAGAAAAAACAGAAAATAATAGTAAACAAGAAGGAGAAGGAGTGGATGGTAAAGAGAATGAGAAAGAGGAAATAGAAAGTACTAAAGAAGAAGAAGGAGAAGGAGAANGAGAAGGAACAGTAGATGGTAATGAAGGTAATGGTGAAATAGCTAATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>37</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="20515" PGL_stop="18607"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20515" e_stop="18607"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="20515" e_stop="18607" e_length="1909"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20515" stop="18607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAGTATAGTCCTCTTTGGTTGGAAAGGTTTCAGTTTATATCAGCAGTGAGATTAGGATCAGATGCAACTAGTATCAATGTGTTACCATTTAGAGATGCTGAAGGACTGAGTAAGTATGTCGCCATTGGCGATGATCGCGGGAAAGTGTATGCATTCTCTAGAAATGGAGAAGTTTTGGTTGAATTTCAGACGTCGATGAGTTCACCAATAACAGCCTATGTGTCGTACTTGTCTGTTTATAAGAATGAGAGTGTGGTTGTTACGGGGCATGAGAATGGTGGGATTTTGATGCATAGAATTTGGGAGGTAGTAGTACCTGATGGTGATGACAGGACTTCTCTTCGTATGGAAACTGTAGGAAAATTTGCTTCACCGGAAATCGAGGAAGGAGGGTCTTCGATTTTAAGTTTAGAGGTGCATCATGTTGGAAGAAATAGGTATATCTTGTCCACGGATTCTGGTGGGAAACTCTGGGTTTTTAGGGAGAATGGAACTGTTTATGGGGTGACAACACCAAAGAGCAGGCCACTTGCGTTCTTGAAACAAAGGCTACTATTTCTAACTGAGACTGGTGCAGGGTCACTAGACTTGAGGACCATGAAGATTAGGGAATCTGAATGTGAAGGTTTAAACAATTCTATTGCTAAGAGTTATGTATTTGATGCAACTGAACGGTCGAAAGCCTATGGGTTTACATCTGATGGTGATTTGATTCATGTGCTACTCTTAGGTGATAATATGAACTTCAAGTGCAGGGTTAGATCCAAAAGGAAGTTAGAGATGGCCGAGCCTCTGTCTTTTCAAGCGATTAAAGGATATTTGCTTGTTGCTAACCAGGATAAGGTATCACTGTATAACGTGTCATCGCTGCATTACGTGCGGTCTGGTGGACCAAGACAATTGTTCTCTGTTGGTCATGATGAGATTGTAGCATCATTTTTGAGCTCTCAATCTTTGGAACCAAATGATAAAAGCAGAAAGGTTATTCCTTTAGTTGCCAGTGATCAAGAAAAGCTCGTTATTCTTGGCCTTGGAAGTGGTTACTTGGGGATATATCGCTCAAACCTTCCAGTTTTCAAAAATGAGTTCAACACTATGCTGTGGACGAGTCCTGTTTTATTTTTCATCATTTTCCTTTTAGGTGCATATTATTTTTTTGCCAAGAAAAAGGAAGCTCTTACCTCCTGGGGACCTGACGATCCTTTCCCTTCTACGGGTGTTACAAGTGGCGCTCCAATGGGATCCAGCCAGGGTGACAGATCTTATCCTGATTCATCGAGGAATGCAGATCTGATGGATCTTAGGGGTAGTAGCCTCAGAGGTCCATCTGGAAGGTATGTCTCTCCATCTCGCTATTCTGGTGGAACGGCAGGTGCCTATAGAACAAATTCTGCTGATACAAATTCTAGGTCTGCCTCTGTTGATCCCAACTTTAGAACTACCTCGGAGTTAAAATTTAGGGGGACGAATCTAGAAACACCAGGTTTTCCAAAAAGGAGAGATAGCCTGTTTGTAAACAGTCAAATTGTGGATGATGGCAAGTAACCTGCAGTTCATGTATGGTACATGTGTTTCAGCACCATACTGTCATTTGGACACGTGGGGAAGCTGACAATCTATAGCTGTAACTTTGCAACGGGTTACTCGTATTGAGAGGAAATAAAAAGAACATTTTGAGCTTTCAGTTCTGATTGCCTTAAATTGATAATCAAGGTTAAGCAGATGTCTGTTAACAATTTTTTCTCTCTTTTCCATTTATGCTAAATATTTATTCCAAGTATGCGCGCAATCCATCTGTAAATTCAGTTCTAGTGGAGATTATTCATATAGTGGTTGAAAGATATCTGAGTTTGAGATCAAGGCGGAAAAGATAAGCAGAACCCCCACCCCAAATAGAAAAAAGAAA</gDNA_template>
            <first_frame> T  K  Y  S  P  L  W  L  E  R  F  Q  F  I  S  A  V  R  L  G  S  D  A  T  S  I  N  V  L  P  F  R  D  A  E  G  L  S  K  Y  V  A  I  G  D  D  R  G  K  V  Y  A  F  S  R  N  G  E  V  L  V  E  F  Q  T  S  M  S  S  P  I  T  A  Y  V  S  Y  L  S  V  Y  K  N  E  S  V  V  V  T  G  H  E  N  G  G  I  L  M  H  R  I  W  E  V  V  V  P  D  G  D  D  R  T  S  L  R  M  E  T  V  G  K  F  A  S  P  E  I  E  E  G  G  S  S  I  L  S  L  E  V  H  H  V  G  R  N  R  Y  I  L  S  T  D  S  G  G  K  L  W  V  F  R  E  N  G  T  V  Y  G  V  T  T  P  K  S  R  P  L  A  F  L  K  Q  R  L  L  F  L  T  E  T  G  A  G  S  L  D  L  R  T  M  K  I  R  E  S  E  C  E  G  L  N  N  S  I  A  K  S  Y  V  F  D  A  T  E  R  S  K  A  Y  G  F  T  S  D  G  D  L  I  H  V  L  L  L  G  D  N  M  N  F  K  C  R  V  R  S  K  R  K  L  E  M  A  E  P  L  S  F  Q  A  I  K  G  Y  L  L  V  A  N  Q  D  K  V  S  L  Y  N  V  S  S  L  H  Y  V  R  S  G  G  P  R  Q  L  F  S  V  G  H  D  E  I  V  A  S  F  L  S  S  Q  S  L  E  P  N  D  K  S  R  K  V  I  P  L  V  A  S  D  Q  E  K  L  V  I  L  G  L  G  S  G  Y  L  G  I  Y  R  S  N  L  P  V  F  K  N  E  F  N  T  M  L  W  T  S  P  V  L  F  F  I  I  F  L  L  G  A  Y  Y  F  F  A  K  K  K  E  A  L  T  S  W  G  P  D  D  P  F  P  S  T  G  V  T  S  G  A  P  M  G  S  S  Q  G  D  R  S  Y  P  D  S  S  R  N  A  D  L  M  D  L  R  G  S  S  L  R  G  P  S  G  R  Y  V  S  P  S  R  Y  S  G  G  T  A  G  A  Y  R  T  N  S  A  D  T  N  S  R  S  A  S  V  D  P  N  F  R  T  T  S  E  L  K  F  R  G  T  N  L  E  T  P  G  F  P  K  R  R  D  S  L  F  V  N  S  Q  I  V  D  D  G  K  *  P  A  V  H  V  W  Y  M  C  F  S  T  I  L  S  F  G  H  V  G  K  L  T  I  Y  S  C  N  F  A  T  G  Y  S  Y  *  E  E  I  K  R  T  F  *  A  F  S  S  D  C  L  K  L  I  I  K  V  K  Q  M  S  V  N  N  F  F  S  L  F  H  L  C  *  I  F  I  P  S  M  R  A  I  H  L  *  I  Q  F  *  W  R  L  F  I  *  W  L  K  D  I  *  V  *  D  Q  G  G  K  D  K  Q  N  P  H  P  K  *  K  K  E  </first_frame>
            <second_frame>  Q  S  I  V  L  F  G  W  K  G  F  S  L  Y  Q  Q  *  D  *  D  Q  M  Q  L  V  S  M  C  Y  H  L  E  M  L  K  D  *  V  S  M  S  P  L  A  M  I  A  G  K  C  M  H  S  L  E  M  E  K  F  W  L  N  F  R  R  R  *  V  H  Q  *  Q  P  M  C  R  T  C  L  F  I  R  M  R  V  W  L  L  R  G  M  R  M  V  G  F  *  C  I  E  F  G  R  *  *  Y  L  M  V  M  T  G  L  L  F  V  W  K  L  *  E  N  L  L  H  R  K  S  R  K  E  G  L  R  F  *  V  *  R  C  I  M  L  E  E  I  G  I  S  C  P  R  I  L  V  G  N  S  G  F  L  G  R  M  E  L  F  M  G  *  Q  H  Q  R  A  G  H  L  R  S  *  N  K  G  Y  Y  F  *  L  R  L  V  Q  G  H  *  T  *  G  P  *  R  L  G  N  L  N  V  K  V  *  T  I  L  L  L  R  V  M  Y  L  M  Q  L  N  G  R  K  P  M  G  L  H  L  M  V  I  *  F  M  C  Y  S  *  V  I  I  *  T  S  S  A  G  L  D  P  K  G  S  *  R  W  P  S  L  C  L  F  K  R  L  K  D  I  C  L  L  L  T  R  I  R  Y  H  C  I  T  C  H  R  C  I  T  C  G  L  V  D  Q  D  N  C  S  L  L  V  M  M  R  L  *  H  H  F  *  A  L  N  L  W  N  Q  M  I  K  A  E  R  L  F  L  *  L  P  V  I  K  K  S  S  L  F  L  A  L  E  V  V  T  W  G  Y  I  A  Q  T  F  Q  F  S  K  M  S  S  T  L  C  C  G  R  V  L  F  Y  F  S  S  F  S  F  *  V  H  I  I  F  L  P  R  K  R  K  L  L  P  P  G  D  L  T  I  L  S  L  L  R  V  L  Q  V  A  L  Q  W  D  P  A  R  V  T  D  L  I  L  I  H  R  G  M  Q  I  *  W  I  L  G  V  V  A  S  E  V  H  L  E  G  M  S  L  H  L  A  I  L  V  E  R  Q  V  P  I  E  Q  I  L  L  I  Q  I  L  G  L  P  L  L  I  P  T  L  E  L  P  R  S  *  N  L  G  G  R  I  *  K  H  Q  V  F  Q  K  G  E  I  A  C  L  *  T  V  K  L  W  M  M  A  S  N  L  Q  F  M  Y  G  T  C  V  S  A  P  Y  C  H  L  D  T  W  G  S  *  Q  S  I  A  V  T  L  Q  R  V  T  R  I  E  R  K  *  K  E  H  F  E  L  S  V  L  I  A  L  N  *  *  S  R  L  S  R  C  L  L  T  I  F  S  L  F  S  I  Y  A  K  Y  L  F  Q  V  C  A  Q  S  I  C  K  F  S  S  S  G  D  Y  S  Y  S  G  *  K  I  S  E  F  E  I  K  A  E  K  I  S  R  T  P  T  P  N  R  K  K  K </second_frame>
            <third_frame>   K  V  *  S  S  L  V  G  K  V  S  V  Y  I  S  S  E  I  R  I  R  C  N  *  Y  Q  C  V  T  I  *  R  C  *  R  T  E  *  V  C  R  H  W  R  *  S  R  E  S  V  C  I  L  *  K  W  R  S  F  G  *  I  S  D  V  D  E  F  T  N  N  S  L  C  V  V  L  V  C  L  *  E  *  E  C  G  C  Y  G  A  *  E  W  W  D  F  D  A  *  N  L  G  G  S  S  T  *  W  *  *  Q  D  F  S  S  Y  G  N  C  R  K  I  C  F  T  G  N  R  G  R  R  V  F  D  F  K  F  R  G  A  S  C  W  K  K  *  V  Y  L  V  H  G  F  W  W  E  T  L  G  F  *  G  E  W  N  C  L  W  G  D  N  T  K  E  Q  A  T  C  V  L  E  T  K  A  T  I  S  N  *  D  W  C  R  V  T  R  L  E  D  H  E  D  *  G  I  *  M  *  R  F  K  Q  F  Y  C  *  E  L  C  I  *  C  N  *  T  V  E  S  L  W  V  Y  I  *  W  *  F  D  S  C  A  T  L  R  *  *  Y  E  L  Q  V  Q  G  *  I  Q  K  E  V  R  D  G  R  A  S  V  F  S  S  D  *  R  I  F  A  C  C  *  P  G  *  G  I  T  V  *  R  V  I  A  A  L  R  A  V  W  W  T  K  T  I  V  L  C  W  S  *  *  D  C  S  I  I  F  E  L  S  I  F  G  T  K  *  *  K  Q  K  G  Y  S  F  S  C  Q  *  S  R  K  A  R  Y  S  W  P  W  K  W  L  L  G  D  I  S  L  K  P  S  S  F  Q  K  *  V  Q  H  Y  A  V  D  E  S  C  F  I  F  H  H  F  P  F  R  C  I  L  F  F  C  Q  E  K  G  S  S  Y  L  L  G  T  *  R  S  F  P  F  Y  G  C  Y  K  W  R  S  N  G  I  Q  P  G  *  Q  I  L  S  *  F  I  E  E  C  R  S  D  G  S  *  G  *  *  P  Q  R  S  I  W  K  V  C  L  S  I  S  L  F  W  W  N  G  R  C  L  *  N  K  F  C  *  Y  K  F  *  V  C  L  C  *  S  Q  L  *  N  Y  L  G  V  K  I  *  G  D  E  S  R  N  T  R  F  S  K  K  E  R  *  P  V  C  K  Q  S  N  C  G  *  W  Q  V  T  C  S  S  C  M  V  H  V  F  Q  H  H  T  V  I  W  T  R  G  E  A  D  N  L  *  L  *  L  C  N  G  L  L  V  L  R  G  N  K  K  N  I  L  S  F  Q  F  *  L  P  *  I  D  N  Q  G  *  A  D  V  C  *  Q  F  F  L  S  F  P  F  M  L  N  I  Y  S  K  Y  A  R  N  P  S  V  N  S  V  L  V  E  I  I  H  I  V  V  E  R  Y  L  S  L  R  S  R  R  K  R  *  A  E  P  P  P  Q  I  E  K  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20515" stop="18968"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1545</number_coding_nucleotides>
                  <number_encoded_amino_acids>515</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKYSPLWLERFQFISAVRLGSDATSINVLPFRDAEGLSKYVAIGDDRGKVYAFSRNGEVLVEFQTSMSSPITAYVSYLSVYKNESVVVTGHENGGILMHRIWEVVVPDGDDRTSLRMETVGKFASPEIEEGGSSILSLEVHHVGRNRYILSTDSGGKLWVFRENGTVYGVTTPKSRPLAFLKQRLLFLTETGAGSLDLRTMKIRESECEGLNNSIAKSYVFDATERSKAYGFTSDGDLIHVLLLGDNMNFKCRVRSKRKLEMAEPLSFQAIKGYLLVANQDKVSLYNVSSLHYVRSGGPRQLFSVGHDEIVASFLSSQSLEPNDKSRKVIPLVASDQEKLVILGLGSGYLGIYRSNLPVFKNEFNTMLWTSPVLFFIIFLLGAYYFFAKKKEALTSWGPDDPFPSTGVTSGAPMGSSQGDRSYPDSSRNADLMDLRGSSLRGPSGRYVSPSRYSGGTAGAYRTNSADTNSRSASVDPNFRTTSELKFRGTNLETPGFPKRRDSLFVNSQIVDDGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="28209" PGL_stop="24454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28209" e_stop="27803"/>
            <exon e_start="26957" e_stop="26598"/>
            <exon e_start="24789" e_stop="24454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.985" e_score="0.973"/>
          <exon-intron don_prob="0.925" acc_prob="0.655" e_score="0.997"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="28209" e_stop="27803" e_length="407"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.985">
            <gDNA_intron_boundary i_start="27802" i_stop="26958" i_length="845"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="26957" e_stop="26598" e_length="360"/>
          </exon>
          <intron i_serial="2" don_prob="0.925" acc_prob="0.655">
            <gDNA_intron_boundary i_start="26597" i_stop="24790" i_length="1808"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="24789" e_stop="24454" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28209" stop="27803"/>
              <exon start="26957" stop="26598"/>
              <exon start="24789" stop="24454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28128" stop="27803"/>
              <exon start="26957" stop="26700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26722" stop="26598"/>
              <exon start="24789" stop="24454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335590" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTTACTTTATTGTATTTATGAAATTTTCCCCTTACGGGGCATGTTTGTCTTATCCATTCAGTTGAACAAATTAGAATGCCGGCCCCAAGTGTTAGAGCCATCCATCAGCAATTTCCTAATTCCTAAACCTCAAATCTCCTCCTCCTTATCCCGCTCGCTAGAGAATCGAAAAAAATCGAATACAGTCCATTTTTCACTCGGCGACGATGAAGGCTTCATTCAAAGCACGATATGAGCCCGACAAAGCCGCCGCCAACGCTACTGTTGCATTCAACGCCGGCGACCTTAAGCTCCGAGCCTCCATGACCGATGCTACTGTTGTCAAAGGTCCCAGCTTAAACGGATTAGCTCTGGCCGTTGAGAAACCTGGATTGTTCATCGTCGACTACAACGTCCCGAAGAAG : GACATTAGGTTTCAATTTATGAACTCAATCAAGGTTCTGGAGAAGCCATTGAATTTGAATTACATTCATTTTCATGGAGACAAGCGAACAATATTGGATGGAACTTTGGTGGTTGATTCTGCCAACAAGGTGTCGGCTAATCACGTCATGGGCTCAGGAAGTTGTAAATTAAAGTACACATATGTCCACGGAGGAATCACTACTTTCGAGCCCATCTATGATACAGCAAAGAATGCGTGGGACTTCATGGTATCACGTAAAGTTTATGGGGATGACGTGTTTAAGGCTACTTATCAGACAACAAGCAAAAATTTGGGGCTCGAATGGTCCAGGAGTTCTAAGTTAAATGGATCATTTAAG : ATTTGTGCATCTCTCTGTTTGCTTGAGGAACGCAAAATCCCAAAGTTAAGTGCTGAGACGTCGTGGGACTTTGAAATGTGATTCTGTTTCTTCTGCAATAATTCGGATGTAACTACTTCTGGCTACCCTTCATAATTGGGTTTCACCTAATGTTTTCTAGCTCAATTTGTTGATTCACAAGTGAGCTGTTCGTTTTGCTTTGTAATCGGTTTATGGTTACCAACATGAGTATTGATCCAAAGTTGTTTTTTGTCAATCTTCCGATTTCAAGACACTTCCATGTTTTGATGCCCTGACTTTACCTGAATTAATGATTTAAGGCTCCATCAAAATGAT</gDNA_template>
            <first_frame> K  V  T  L  L  Y  L  *  N  F  P  L  T  G  H  V  C  L  I  H  S  V  E  Q  I  R  M  P  A  P  S  V  R  A  I  H  Q  Q  F  P  N  S  *  T  S  N  L  L  L  L  I  P  L  A  R  E  S  K  K  I  E  Y  S  P  F  F  T  R  R  R  *  R  L  H  S  K  H  D  M  S  P  T  K  P  P  P  T  L  L  L  H  S  T  P  A  T  L  S  S  E  P  P  *  P  M  L  L  L  S  K  V  P  A  *  T  D  *  L  W  P  L  R  N  L  D  C  S  S  S  T  T  T  S  R  R  R :   T  L  G  F  N  L  *  T  Q  S  R  F  W  R  S  H  *  I  *  I  T  F  I  F  M  E  T  S  E  Q  Y  W  M  E  L  W  W  L  I  L  P  T  R  C  R  L  I  T  S  W  A  Q  E  V  V  N  *  S  T  H  M  S  T  E  E  S  L  L  S  S  P  S  M  I  Q  Q  R  M  R  G  T  S  W  Y  H  V  K  F  M  G  M  T  C  L  R  L  L  I  R  Q  Q  A  K  I  W  G  S  N  G  P  G  V  L  S  *  M  D  H  L  R :   F  V  H  L  S  V  C  L  R  N  A  K  S  Q  S  *  V  L  R  R  R  G  T  L  K  C  D  S  V  S  S  A  I  I  R  M  *  L  L  L  A  T  L  H  N  W  V  S  P  N  V  F  *  L  N  L  L  I  H  K  *  A  V  R  F  A  L  *  S  V  Y  G  Y  Q  H  E  Y  *  S  K  V  V  F  C  Q  S  S  D  F  K  T  L  P  C  F  D  A  L  T  L  P  E  L  M  I  *  G  S  I  K  M   </first_frame>
            <second_frame>  K  L  L  Y  C  I  Y  E  I  F  P  L  R  G  M  F  V  L  S  I  Q  L  N  K  L  E  C  R  P  Q  V  L  E  P  S  I  S  N  F  L  I  P  K  P  Q  I  S  S  S  L  S  R  S  L  E  N  R  K  K  S  N  T  V  H  F  S  L  G  D  D  E  G  F  I  Q  S  T  I  *  A  R  Q  S  R  R  Q  R  Y  C  C  I  Q  R  R  R  P  *  A  P  S  L  H  D  R  C  Y  C  C  Q  R  S  Q  L  K  R  I  S  S  G  R  *  E  T  W  I  V  H  R  R  L  Q  R  P  E  E   : G  H  *  V  S  I  Y  E  L  N  Q  G  S  G  E  A  I  E  F  E  L  H  S  F  S  W  R  Q  A  N  N  I  G  W  N  F  G  G  *  F  C  Q  Q  G  V  G  *  S  R  H  G  L  R  K  L  *  I  K  V  H  I  C  P  R  R  N  H  Y  F  R  A  H  L  *  Y  S  K  E  C  V  G  L  H  G  I  T  *  S  L  W  G  *  R  V  *  G  Y  L  S  D  N  K  Q  K  F  G  A  R  M  V  Q  E  F  *  V  K  W  I  I  *   : D  L  C  I  S  L  F  A  *  G  T  Q  N  P  K  V  K  C  *  D  V  V  G  L  *  N  V  I  L  F  L  L  Q  *  F  G  C  N  Y  F  W  L  P  F  I  I  G  F  H  L  M  F  S  S  S  I  C  *  F  T  S  E  L  F  V  L  L  C  N  R  F  M  V  T  N  M  S  I  D  P  K  L  F  F  V  N  L  P  I  S  R  H  F  H  V  L  M  P  *  L  Y  L  N  *  *  F  K  A  P  S  K  *  </second_frame>
            <third_frame>   S  Y  F  I  V  F  M  K  F  S  P  Y  G  A  C  L  S  Y  P  F  S  *  T  N  *  N  A  G  P  K  C  *  S  H  P  S  A  I  S  *  F  L  N  L  K  S  P  P  P  Y  P  A  R  *  R  I  E  K  N  R  I  Q  S  I  F  H  S  A  T  M  K  A  S  F  K  A  R  Y  E  P  D  K  A  A  A  N  A  T  V  A  F  N  A  G  D  L  K  L  R  A  S  M  T  D  A  T  V  V  K  G  P  S  L  N  G  L  A  L  A  V  E  K  P  G  L  F  I  V  D  Y  N  V  P  K  K  :  D  I  R  F  Q  F  M  N  S  I  K  V  L  E  K  P  L  N  L  N  Y  I  H  F  H  G  D  K  R  T  I  L  D  G  T  L  V  V  D  S  A  N  K  V  S  A  N  H  V  M  G  S  G  S  C  K  L  K  Y  T  Y  V  H  G  G  I  T  T  F  E  P  I  Y  D  T  A  K  N  A  W  D  F  M  V  S  R  K  V  Y  G  D  D  V  F  K  A  T  Y  Q  T  T  S  K  N  L  G  L  E  W  S  R  S  S  K  L  N  G  S  F  K  :  I  C  A  S  L  C  L  L  E  E  R  K  I  P  K  L  S  A  E  T  S  W  D  F  E  M  *  F  C  F  F  C  N  N  S  D  V  T  T  S  G  Y  P  S  *  L  G  F  T  *  C  F  L  A  Q  F  V  D  S  Q  V  S  C  S  F  C  F  V  I  G  L  W  L  P  T  *  V  L  I  Q  S  C  F  L  S  I  F  R  F  Q  D  T  S  M  F  *  C  P  D  F  T  *  I  N  D  L  R  L  H  Q  N  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28045" stop="27803"/>
                    <exon start="26957" stop="26598"/>
                    <exon start="24789" stop="24709"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIEKNRIQSIFHSATMKASFKARYEPDKAAANATVAFNAGDLKLRASMTDATVVKGPSLNGLALAVEKPGLFIVDYNVPKKDIRFQFMNSIKVLEKPLNLNYIHFHGDKRTILDGTLVVDSANKVSANHVMGSGSCKLKYTYVHGGITTFEPIYDTAKNAWDFMVSRKVYGDDVFKATYQTTSKNLGLEWSRSSKLNGSFKICASLCLLEERKIPKLSAETSWDFEM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="42384" PGL_stop="43927"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42384" e_stop="42886"/>
            <exon e_start="43887" e_stop="43927"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.352" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="42384" e_stop="42886" e_length="503"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.352">
            <gDNA_intron_boundary i_start="42887" i_stop="43886" i_length="1000"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43887" e_stop="43927" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42384" stop="42886"/>
              <exon start="43887" stop="43927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341871" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCAAAGAAACACCTCTCTGGAAAAAAATAAAAAAAGTGACAGAGAAATATCCATTTCTCCCCAAATTTCTCTCAAAATCATTTGCTCCGTTTAATCCTCTCTCAAAGGAGGAAAAAAAGGAAACACCAATGTTTTAGTTCTTTTTCCCAACAATCTTCCTCTTTCTGTTTATATAATTTTTTTTGAAGAATAGTGTTGTATTTTTTACATCATGAGAAAATTGAGCCCTAATTTGGACAAAGAAGATGGATTGGATACAGTTTTGGAGGTTCCTCTTCCAGAAGAAATGTTTAGCAAAACGGATGGCAGCAGTGCAGCAATCAGGTGGAAGAAGATGCTAAATCTAATACGAGCTGATAAATTGCCAAATCGATCGAAGGCGGTTTCTTCTGGAAATAATGATCAATTTATGTTCTTGTTGAAAATTGTTGGATCTGCTCTTATACCTTTTCAGGTTCAATTGGATCATGCAATTAACTTGCCTGTTAGAGATGGTTGCATT : AAAGCTTCTTCTGCAAAATACATAGTACAACAATACCTAGC</gDNA_template>
            <first_frame> T  K  E  T  P  L  W  K  K  I  K  K  V  T  E  K  Y  P  F  L  P  K  F  L  S  K  S  F  A  P  F  N  P  L  S  K  E  E  K  K  E  T  P  M  F  *  F  F  F  P  T  I  F  L  F  L  F  I  *  F  F  L  K  N  S  V  V  F  F  T  S  *  E  N  *  A  L  I  W  T  K  K  M  D  W  I  Q  F  W  R  F  L  F  Q  K  K  C  L  A  K  R  M  A  A  V  Q  Q  S  G  G  R  R  C  *  I  *  Y  E  L  I  N  C  Q  I  D  R  R  R  F  L  L  E  I  M  I  N  L  C  S  C  *  K  L  L  D  L  L  L  Y  L  F  R  F  N  W  I  M  Q  L  T  C  L  L  E  M  V  A  L :   K  L  L  L  Q  N  T  *  Y  N  N  T  *  </first_frame>
            <second_frame>  P  K  K  H  L  S  G  K  K  *  K  K  *  Q  R  N  I  H  F  S  P  N  F  S  Q  N  H  L  L  R  L  I  L  S  Q  R  R  K  K  R  K  H  Q  C  F  S  S  F  S  Q  Q  S  S  S  F  C  L  Y  N  F  F  *  R  I  V  L  Y  F  L  H  H  E  K  I  E  P  *  F  G  Q  R  R  W  I  G  Y  S  F  G  G  S  S  S  R  R  N  V  *  Q  N  G  W  Q  Q  C  S  N  Q  V  E  E  D  A  K  S  N  T  S  *  *  I  A  K  S  I  E  G  G  F  F  W  K  *  *  S  I  Y  V  L  V  E  N  C  W  I  C  S  Y  T  F  S  G  S  I  G  S  C  N  *  L  A  C  *  R  W  L  H   : *  S  F  F  C  K  I  H  S  T  T  I  P  S </second_frame>
            <third_frame>   Q  R  N  T  S  L  E  K  N  K  K  S  D  R  E  I  S  I  S  P  Q  I  S  L  K  I  I  C  S  V  *  S  S  L  K  G  G  K  K  G  N  T  N  V  L  V  L  F  P  N  N  L  P  L  S  V  Y  I  I  F  F  E  E  *  C  C  I  F  Y  I  M  R  K  L  S  P  N  L  D  K  E  D  G  L  D  T  V  L  E  V  P  L  P  E  E  M  F  S  K  T  D  G  S  S  A  A  I  R  W  K  K  M  L  N  L  I  R  A  D  K  L  P  N  R  S  K  A  V  S  S  G  N  N  D  Q  F  M  F  L  L  K  I  V  G  S  A  L  I  P  F  Q  V  Q  L  D  H  A  I  N  L  P  V  R  D  G  C  I  :  K  A  S  S  A  K  Y  I  V  Q  Q  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42578" stop="42886"/>
                    <exon start="43887" stop="43925"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CCIFYIMRKLSPNLDKEDGLDTVLEVPLPEEMFSKTDGSSAAIRWKKMLNLIRADKLPNRSKAVSSGNNDQFMFLLKIVGSALIPFQVQLDHAINLPVRDGCIKASSAKYIVQQYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="51474" PGL_stop="54370"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51474" e_stop="51895"/>
            <exon e_start="52730" e_stop="52956"/>
            <exon e_start="54024" e_stop="54370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="0.957"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="0.996"/>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="51474" e_stop="51895" e_length="422"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51896" i_stop="52729" i_length="834"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="52730" e_stop="52956" e_length="227"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="52957" i_stop="54023" i_length="1067"/>
          </intron>
          <exon e_serial="3" e_score="0.908">
            <gDNA_exon_boundary e_start="54024" e_stop="54370" e_length="347"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51474" stop="51895"/>
              <exon start="52730" stop="52956"/>
              <exon start="54024" stop="54248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51475" stop="51895"/>
              <exon start="52730" stop="52956"/>
              <exon start="54024" stop="54370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321766" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCTTCTTGATTCTTCAAAAATAAAAAATCAAAAAAATTCTTACTCTCAGTTTTGCTTATAAAGATCTAATCTTTTCTGAATTGGGTGAAAGAAAAATCATGAGAATATACCAAGAAATGAAAGATGAAGAAGCTCAATCAAGAATTAGTACAAATACAGTAACAACAGTTTCTTCAGTTTCAGCAGTAGCAACACCAGCAGCAGCAGCAGCAACATCAACTGTAAAAAAAGATCAAGGATTTAGTGGGGTTTTTGGTAAAGGTAAATACAAATTGTGGGTATTGGCTGCAATTCTTTTGCTAGCTTTTTGGTCTATGTTTACTGGCTCACTTACTCTTAGTCTCAACTGGTCTACTTCAAATCTCAGCCGTTTATCTCATGCTTCTGATTTCACGATCCATGAAGATCTTGATATTCTG : GTATTGGAGGAAAGAGAGAAGATGGTAAAACATATGTGGGATGTGTACACACAGAATAGCAGGATCAGGTTGCCTAAGTTCTGGCAAGACGCTTTCCAAGCAGCATACCTAGATTTGACGAGTGATTCACCAGCTACCCGAGACACTGCTGTGTCGGAGATTGCCAAGATGTCCCTCCGCTCCACTTCCACTTATGAATCACCTTCCAACAAGAAACCAGAACCAAG : AGAAGCAGAGAAAGAAAAAGGATCTAAAAGTCCGGCGAAGACGATAACTACAAAGAAACAGAAATGATGATGAGGGAAATGGTTGTGTTGAGAATTAAGATGGAAGGTAGATGCAACAAAGTTGTGGTTGAACTCATTCTTCTTGGTAGTCAAAGTTCTTTACTTGTATTTATACTACTACTACTAGAGCTTTATTTAGATATATCATAAGATCAAAATTTAGTGAAGGCAAAGGTCTTCCTTTTGATTGTTTCCACTTAATAATATGCCATTTCAAAACCAGCTGGTTAATTATGTTGTTAACTAAAATCGGTTATTCTTATTTGGTTGATCCAAATCATATAGTA</gDNA_template>
            <first_frame> S  S  S  *  F  F  K  N  K  K  S  K  K  F  L  L  S  V  L  L  I  K  I  *  S  F  L  N  W  V  K  E  K  S  *  E  Y  T  K  K  *  K  M  K  K  L  N  Q  E  L  V  Q  I  Q  *  Q  Q  F  L  Q  F  Q  Q  *  Q  H  Q  Q  Q  Q  Q  Q  H  Q  L  *  K  K  I  K  D  L  V  G  F  L  V  K  V  N  T  N  C  G  Y  W  L  Q  F  F  C  *  L  F  G  L  C  L  L  A  H  L  L  L  V  S  T  G  L  L  Q  I  S  A  V  Y  L  M  L  L  I  S  R  S  M  K  I  L  I  F  W :   Y  W  R  K  E  R  R  W  *  N  I  C  G  M  C  T  H  R  I  A  G  S  G  C  L  S  S  G  K  T  L  S  K  Q  H  T  *  I  *  R  V  I  H  Q  L  P  E  T  L  L  C  R  R  L  P  R  C  P  S  A  P  L  P  L  M  N  H  L  P  T  R  N  Q  N  Q   : E  K  Q  R  K  K  K  D  L  K  V  R  R  R  R  *  L  Q  R  N  R  N  D  D  E  G  N  G  C  V  E  N  *  D  G  R  *  M  Q  Q  S  C  G  *  T  H  S  S  W  *  S  K  F  F  T  C  I  Y  T  T  T  T  R  A  L  F  R  Y  I  I  R  S  K  F  S  E  G  K  G  L  P  F  D  C  F  H  L  I  I  C  H  F  K  T  S  W  L  I  M  L  L  T  K  I  G  Y  S  Y  L  V  D  P  N  H  I  V </first_frame>
            <second_frame>  H  L  L  D  S  S  K  I  K  N  Q  K  N  S  Y  S  Q  F  C  L  *  R  S  N  L  F  *  I  G  *  K  K  N  H  E  N  I  P  R  N  E  R  *  R  S  S  I  K  N  *  Y  K  Y  S  N  N  S  F  F  S  F  S  S  S  N  T  S  S  S  S  S  N  I  N  C  K  K  R  S  R  I  *  W  G  F  W  *  R  *  I  Q  I  V  G  I  G  C  N  S  F  A  S  F  L  V  Y  V  Y  W  L  T  Y  S  *  S  Q  L  V  Y  F  K  S  Q  P  F  I  S  C  F  *  F  H  D  P  *  R  S  *  Y  S   : G  I  G  G  K  R  E  D  G  K  T  Y  V  G  C  V  H  T  E  *  Q  D  Q  V  A  *  V  L  A  R  R  F  P  S  S  I  P  R  F  D  E  *  F  T  S  Y  P  R  H  C  C  V  G  D  C  Q  D  V  P  P  L  H  F  H  L  *  I  T  F  Q  Q  E  T  R  T  K  :  R  S  R  E  R  K  R  I  *  K  S  G  E  D  D  N  Y  K  E  T  E  M  M  M  R  E  M  V  V  L  R  I  K  M  E  G  R  C  N  K  V  V  V  E  L  I  L  L  G  S  Q  S  S  L  L  V  F  I  L  L  L  L  E  L  Y  L  D  I  S  *  D  Q  N  L  V  K  A  K  V  F  L  L  I  V  S  T  *  *  Y  A  I  S  K  P  A  G  *  L  C  C  *  L  K  S  V  I  L  I  W  L  I  Q  I  I  *   </second_frame>
            <third_frame>   I  F  L  I  L  Q  K  *  K  I  K  K  I  L  T  L  S  F  A  Y  K  D  L  I  F  S  E  L  G  E  R  K  I  M  R  I  Y  Q  E  M  K  D  E  E  A  Q  S  R  I  S  T  N  T  V  T  T  V  S  S  V  S  A  V  A  T  P  A  A  A  A  A  T  S  T  V  K  K  D  Q  G  F  S  G  V  F  G  K  G  K  Y  K  L  W  V  L  A  A  I  L  L  L  A  F  W  S  M  F  T  G  S  L  T  L  S  L  N  W  S  T  S  N  L  S  R  L  S  H  A  S  D  F  T  I  H  E  D  L  D  I  L  :  V  L  E  E  R  E  K  M  V  K  H  M  W  D  V  Y  T  Q  N  S  R  I  R  L  P  K  F  W  Q  D  A  F  Q  A  A  Y  L  D  L  T  S  D  S  P  A  T  R  D  T  A  V  S  E  I  A  K  M  S  L  R  S  T  S  T  Y  E  S  P  S  N  K  K  P  E  P  R :   E  A  E  K  E  K  G  S  K  S  P  A  K  T  I  T  T  K  K  Q  K  *  *  *  G  K  W  L  C  *  E  L  R  W  K  V  D  A  T  K  L  W  L  N  S  F  F  L  V  V  K  V  L  Y  L  Y  L  Y  Y  Y  Y  *  S  F  I  *  I  Y  H  K  I  K  I  *  *  R  Q  R  S  S  F  *  L  F  P  L  N  N  M  P  F  Q  N  Q  L  V  N  Y  V  V  N  *  N  R  L  F  L  F  G  *  S  K  S  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51500" stop="51895"/>
                    <exon start="52730" stop="52956"/>
                    <exon start="54024" stop="54090"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIKKILTLSFAYKDLIFSELGERKIMRIYQEMKDEEAQSRISTNTVTTVSSVSAVATPAAAAATSTVKKDQGFSGVFGKGKYKLWVLAAILLLAFWSMFTGSLTLSLNWSTSNLSRLSHASDFTIHEDLDILVLEEREKMVKHMWDVYTQNSRIRLPKFWQDAFQAAYLDLTSDSPATRDTAVSEIAKMSLRSTSTYESPSNKKPEPREAEKEKGSKSPAKTITTKKQK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54173" stop="54370"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKFFTCIYTTTTRALFRYIIRSKFSEGKGLPFDCFHLIICHFKTSWLIMLLTKIGYSYLVDPNHIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="57926" PGL_stop="55713"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57926" e_stop="56893"/>
            <exon e_start="56803" e_stop="56610"/>
            <exon e_start="56505" e_stop="56446"/>
            <exon e_start="56231" e_stop="55713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.138" acc_prob="0.994" e_score="0.997"/>
          <exon-intron don_prob="0.999" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="57926" e_stop="56893" e_length="1034"/>
          </exon>
          <intron i_serial="1" don_prob="0.138" acc_prob="0.994">
            <gDNA_intron_boundary i_start="56892" i_stop="56804" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56803" e_stop="56610" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.949">
            <gDNA_intron_boundary i_start="56609" i_stop="56506" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56505" e_stop="56446" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.975">
            <gDNA_intron_boundary i_start="56445" i_stop="56232" i_length="214"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="56231" e_stop="55713" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57926" stop="56893"/>
              <exon start="56803" stop="56610"/>
              <exon start="56505" stop="56446"/>
              <exon start="56231" stop="55713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320985" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAGGTCCAGGAAGAAGAGAGAGCAGACCCGAAGTTGCTATTGCTGATGTTGTGGATGAATATCCAGGGCAAAACCCACCAATTTCACAGTCCAACACCCAAGTACAGTCTGGACAGCGAGCTTGGAAACCTGCTCCTGGTTTCAAGCCGAAGTCATTGTTGGAAATTCAAGAGGAAGAGCAGAGGAGAGCACAAGCAGAAATAACTACTACAGAGGTCGCCACATCTCTGAGCTCCTTAAGTGTGTCTACTCCATGGGCTGGATTTGTTACTAATTCAGATCATAAATTAGTTAGAGATACTCAGCAAGATGCTGCCAGCACTGATTTGAATATGAATAACTCAGATGTTTCTCTCGACCAGAAGACTAAGAAAAGTCAATTGCATGACGTACTGGCTGAGAACACTTTGGCCAAGTCAAGCGATAGAGAGAGAGATTTTCCTGATATGACATCTGTTCAACCTTCCGTGTCTGTCAATGATGATGACAACTTTATTGAAGCTAAAGAAACTAAAAAGAGCCGCAAAAGATCTGCAAAATCTAAGGGAGCAGGAGCAAAGGCCTCAATGCCCACAGCTGCTTCCGAGGTGTCTGTTGCATCAAGTCCTATTGACAAAGTCAAAAGCTTGCGTCAGGTACAACCTGACCAGGAAGTATTACCTGCTATACCATCTGGTCCTTCGCTAGGAGATTTTGTTGTTTGGAAGGGTGAGTCTGCAAGTTCTGCTACTATTCCTGTTCCAGCATGGTCCACCGACTCTGGGAAACCCTCAAAACCCACATCCTTGCGGGACATCCTAAAGGAACAAGAAAAGAAGGTTACTTCTGGACAGCAGCATATACCAGTGCCAACACAGAAATCTGTGCCAAATCCACCTGCGAGAGTAGGTGGTTCATCATGGTCTAGTTCATCGCCCGCCAAGGCTGCATCTCCTATTCAGATTAACTCACAAGCTGGCGCTTATTCAAAAAATAAAGTGGAGGACGATTTGTTTTGGGGCCCAATAGATCATCCCAAGCAAGAGTCAAAGCA : ATCTGAATATCCTCAGCTTGGAAGTCAAGGCAGTTGGGGAAGCAAGACCACACCAGTGAAAGGAAGTCCTGGTGGTTCATTGAGCAGGCAAAAGTCTGTCAGCAGTAAGCCTGCAGAACGTCTACTATCCTCATCTCCTGCGTCAGGTCACTCGTCCCTGAAAGGGAAGAAGGATGCTTTGACAAAGCATTCAG : AAGCAATGGATTTCAGAGAATGGTGTGAGAATGAATGTGATAGGCTCATTGGTACAAGAG : ATACCAGCTTTCTGGACTTCTGTTTCAAGCAATCCAAGTCAGAGGCTGAAATGCTTCTGATAGAGAATCTTGGCTCTTATGATCCTGATCATGAATTCATTGACAAGTTCCTCAACTACAAAGACTTTTTGCCTGCGGATGTTTTTGACATGGCCTTCCAGGGTCGTAATGATCGTAAGGTCACTGGTGCAAGTGCCAAAAATGTGACTTCTAACAGTGTTGGCTTTGACCAGGGCAACTCAAGTGTTCAGGATTGGGCCTCAAAGGGAGGAAAGAAGAAGGGTAAGAAGGGCAAGAAGGTTAACCTTTCAGAGTTGGGCTTCAATGTGGTTAGCAACCGGATAATGATGGGAGAGATTCAGACTGTAGAAGATTAGGTAGAATGAGGGAGGGTACATACTTTGTGTTTGAGAATGTTTGTAAATGCTTTAGGATTATCCAGCAACAGAAGCAGTACTATTTAATCTGCTCAAAGCAATTTTTGTGATACTATTTCTGACTTTAGGTCTTCTAAATCAG</gDNA_template>
            <first_frame> V  G  P  G  R  R  E  S  R  P  E  V  A  I  A  D  V  V  D  E  Y  P  G  Q  N  P  P  I  S  Q  S  N  T  Q  V  Q  S  G  Q  R  A  W  K  P  A  P  G  F  K  P  K  S  L  L  E  I  Q  E  E  E  Q  R  R  A  Q  A  E  I  T  T  T  E  V  A  T  S  L  S  S  L  S  V  S  T  P  W  A  G  F  V  T  N  S  D  H  K  L  V  R  D  T  Q  Q  D  A  A  S  T  D  L  N  M  N  N  S  D  V  S  L  D  Q  K  T  K  K  S  Q  L  H  D  V  L  A  E  N  T  L  A  K  S  S  D  R  E  R  D  F  P  D  M  T  S  V  Q  P  S  V  S  V  N  D  D  D  N  F  I  E  A  K  E  T  K  K  S  R  K  R  S  A  K  S  K  G  A  G  A  K  A  S  M  P  T  A  A  S  E  V  S  V  A  S  S  P  I  D  K  V  K  S  L  R  Q  V  Q  P  D  Q  E  V  L  P  A  I  P  S  G  P  S  L  G  D  F  V  V  W  K  G  E  S  A  S  S  A  T  I  P  V  P  A  W  S  T  D  S  G  K  P  S  K  P  T  S  L  R  D  I  L  K  E  Q  E  K  K  V  T  S  G  Q  Q  H  I  P  V  P  T  Q  K  S  V  P  N  P  P  A  R  V  G  G  S  S  W  S  S  S  S  P  A  K  A  A  S  P  I  Q  I  N  S  Q  A  G  A  Y  S  K  N  K  V  E  D  D  L  F  W  G  P  I  D  H  P  K  Q  E  S  K  Q :   S  E  Y  P  Q  L  G  S  Q  G  S  W  G  S  K  T  T  P  V  K  G  S  P  G  G  S  L  S  R  Q  K  S  V  S  S  K  P  A  E  R  L  L  S  S  S  P  A  S  G  H  S  S  L  K  G  K  K  D  A  L  T  K  H  S   : E  A  M  D  F  R  E  W  C  E  N  E  C  D  R  L  I  G  T  R   : D  T  S  F  L  D  F  C  F  K  Q  S  K  S  E  A  E  M  L  L  I  E  N  L  G  S  Y  D  P  D  H  E  F  I  D  K  F  L  N  Y  K  D  F  L  P  A  D  V  F  D  M  A  F  Q  G  R  N  D  R  K  V  T  G  A  S  A  K  N  V  T  S  N  S  V  G  F  D  Q  G  N  S  S  V  Q  D  W  A  S  K  G  G  K  K  K  G  K  K  G  K  K  V  N  L  S  E  L  G  F  N  V  V  S  N  R  I  M  M  G  E  I  Q  T  V  E  D  *  V  E  *  G  R  V  H  T  L  C  L  R  M  F  V  N  A  L  G  L  S  S  N  R  S  S  T  I  *  S  A  Q  S  N  F  C  D  T  I  S  D  F  R  S  S  K  S  </first_frame>
            <second_frame>  *  V  Q  E  E  E  R  A  D  P  K  L  L  L  L  M  L  W  M  N  I  Q  G  K  T  H  Q  F  H  S  P  T  P  K  Y  S  L  D  S  E  L  G  N  L  L  L  V  S  S  R  S  H  C  W  K  F  K  R  K  S  R  G  E  H  K  Q  K  *  L  L  Q  R  S  P  H  L  *  A  P  *  V  C  L  L  H  G  L  D  L  L  L  I  Q  I  I  N  *  L  E  I  L  S  K  M  L  P  A  L  I  *  I  *  I  T  Q  M  F  L  S  T  R  R  L  R  K  V  N  C  M  T  Y  W  L  R  T  L  W  P  S  Q  A  I  E  R  E  I  F  L  I  *  H  L  F  N  L  P  C  L  S  M  M  M  T  T  L  L  K  L  K  K  L  K  R  A  A  K  D  L  Q  N  L  R  E  Q  E  Q  R  P  Q  C  P  Q  L  L  P  R  C  L  L  H  Q  V  L  L  T  K  S  K  A  C  V  R  Y  N  L  T  R  K  Y  Y  L  L  Y  H  L  V  L  R  *  E  I  L  L  F  G  R  V  S  L  Q  V  L  L  L  F  L  F  Q  H  G  P  P  T  L  G  N  P  Q  N  P  H  P  C  G  T  S  *  R  N  K  K  R  R  L  L  L  D  S  S  I  Y  Q  C  Q  H  R  N  L  C  Q  I  H  L  R  E  *  V  V  H  H  G  L  V  H  R  P  P  R  L  H  L  L  F  R  L  T  H  K  L  A  L  I  Q  K  I  K  W  R  T  I  C  F  G  A  Q  *  I  I  P  S  K  S  Q  S   : N  L  N  I  L  S  L  E  V  K  A  V  G  E  A  R  P  H  Q  *  K  E  V  L  V  V  H  *  A  G  K  S  L  S  A  V  S  L  Q  N  V  Y  Y  P  H  L  L  R  Q  V  T  R  P  *  K  G  R  R  M  L  *  Q  S  I  Q  :  K  Q  W  I  S  E  N  G  V  R  M  N  V  I  G  S  L  V  Q  E  :  I  P  A  F  W  T  S  V  S  S  N  P  S  Q  R  L  K  C  F  *  *  R  I  L  A  L  M  I  L  I  M  N  S  L  T  S  S  S  T  T  K  T  F  C  L  R  M  F  L  T  W  P  S  R  V  V  M  I  V  R  S  L  V  Q  V  P  K  M  *  L  L  T  V  L  A  L  T  R  A  T  Q  V  F  R  I  G  P  Q  R  E  E  R  R  R  V  R  R  A  R  R  L  T  F  Q  S  W  A  S  M  W  L  A  T  G  *  *  W  E  R  F  R  L  *  K  I  R  *  N  E  G  G  Y  I  L  C  V  *  E  C  L  *  M  L  *  D  Y  P  A  T  E  A  V  L  F  N  L  L  K  A  I  F  V  I  L  F  L  T  L  G  L  L  N  Q </second_frame>
            <third_frame>   R  S  R  K  K  R  E  Q  T  R  S  C  Y  C  *  C  C  G  *  I  S  R  A  K  P  T  N  F  T  V  Q  H  P  S  T  V  W  T  A  S  L  E  T  C  S  W  F  Q  A  E  V  I  V  G  N  S  R  G  R  A  E  E  S  T  S  R  N  N  Y  Y  R  G  R  H  I  S  E  L  L  K  C  V  Y  S  M  G  W  I  C  Y  *  F  R  S  *  I  S  *  R  Y  S  A  R  C  C  Q  H  *  F  E  Y  E  *  L  R  C  F  S  R  P  E  D  *  E  K  S  I  A  *  R  T  G  *  E  H  F  G  Q  V  K  R  *  R  E  R  F  S  *  Y  D  I  C  S  T  F  R  V  C  Q  *  *  *  Q  L  Y  *  S  *  R  N  *  K  E  P  Q  K  I  C  K  I  *  G  S  R  S  K  G  L  N  A  H  S  C  F  R  G  V  C  C  I  K  S  Y  *  Q  S  Q  K  L  A  S  G  T  T  *  P  G  S  I  T  C  Y  T  I  W  S  F  A  R  R  F  C  C  L  E  G  *  V  C  K  F  C  Y  Y  S  C  S  S  M  V  H  R  L  W  E  T  L  K  T  H  I  L  A  G  H  P  K  G  T  R  K  E  G  Y  F  W  T  A  A  Y  T  S  A  N  T  E  I  C  A  K  S  T  C  E  S  R  W  F  I  M  V  *  F  I  A  R  Q  G  C  I  S  Y  S  D  *  L  T  S  W  R  L  F  K  K  *  S  G  G  R  F  V  L  G  P  N  R  S  S  Q  A  R  V  K  A  :  I  *  I  S  S  A  W  K  S  R  Q  L  G  K  Q  D  H  T  S  E  R  K  S  W  W  F  I  E  Q  A  K  V  C  Q  Q  *  A  C  R  T  S  T  I  L  I  S  C  V  R  S  L  V  P  E  R  E  E  G  C  F  D  K  A  F  R :   S  N  G  F  Q  R  M  V  *  E  *  M  *  *  A  H  W  Y  K  R :   Y  Q  L  S  G  L  L  F  Q  A  I  Q  V  R  G  *  N  A  S  D  R  E  S  W  L  L  *  S  *  S  *  I  H  *  Q  V  P  Q  L  Q  R  L  F  A  C  G  C  F  *  H  G  L  P  G  S  *  *  S  *  G  H  W  C  K  C  Q  K  C  D  F  *  Q  C  W  L  *  P  G  Q  L  K  C  S  G  L  G  L  K  G  R  K  E  E  G  *  E  G  Q  E  G  *  P  F  R  V  G  L  Q  C  G  *  Q  P  D  N  D  G  R  D  S  D  C  R  R  L  G  R  M  R  E  G  T  Y  F  V  F  E  N  V  C  K  C  F  R  I  I  Q  Q  Q  K  Q  Y  Y  L  I  C  S  K  Q  F  L  *  Y  Y  F  *  L  *  V  F  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57926" stop="56893"/>
                    <exon start="56803" stop="56610"/>
                    <exon start="56505" stop="56446"/>
                    <exon start="56231" stop="55855"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1662</number_coding_nucleotides>
                  <number_encoded_amino_acids>554</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGPGRRESRPEVAIADVVDEYPGQNPPISQSNTQVQSGQRAWKPAPGFKPKSLLEIQEEEQRRAQAEITTTEVATSLSSLSVSTPWAGFVTNSDHKLVRDTQQDAASTDLNMNNSDVSLDQKTKKSQLHDVLAENTLAKSSDRERDFPDMTSVQPSVSVNDDDNFIEAKETKKSRKRSAKSKGAGAKASMPTAASEVSVASSPIDKVKSLRQVQPDQEVLPAIPSGPSLGDFVVWKGESASSATIPVPAWSTDSGKPSKPTSLRDILKEQEKKVTSGQQHIPVPTQKSVPNPPARVGGSSWSSSSPAKAASPIQINSQAGAYSKNKVEDDLFWGPIDHPKQESKQSEYPQLGSQGSWGSKTTPVKGSPGGSLSRQKSVSSKPAERLLSSSPASGHSSLKGKKDALTKHSEAMDFREWCENECDRLIGTRDTSFLDFCFKQSKSEAEMLLIENLGSYDPDHEFIDKFLNYKDFLPADVFDMAFQGRNDRKVTGASAKNVTSNSVGFDQGNSSVQDWASKGGKKKGKKGKKVNLSELGFNVVSNRIMMGEIQTVED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="61498" PGL_stop="60509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61498" e_stop="61198"/>
            <exon e_start="61095" e_stop="60975"/>
            <exon e_start="60857" e_stop="60509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61498" e_stop="61198" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61197" i_stop="61096" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61095" e_stop="60975" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.931" acc_prob="0.994">
            <gDNA_intron_boundary i_start="60974" i_stop="60858" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="60857" e_stop="60509" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61498" stop="61198"/>
              <exon start="61095" stop="60975"/>
              <exon start="60857" stop="60509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332031" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGGGGACGTGAAGATGGTGCTACCCCTACTTTTTCTCTTGGTAGGGGTCGTGCTGTCTCTGGAGGGAGCCCCATGATTAAAGGCTCTCTTCATGTGCAGTCAGTCGGGGCATTCTCGGAGAAAGCTGAAAGTGTTTCCTCTCCTATACGATACAGTCGGTTAAAAATGCTTGATGTGTACAGAGGGACGGACATGCAGTCCTGTAGCAACTTTTCGGATGTGATTGTGCAAGTTCCTTCACTTACACAAGATGAACCTCTGGAGCCTCTCGCATTATGTGCACCCAGTCAGGAGGAATTG : GCTATCTTGAAGGGAATTGACAAGGGGGATGTTCTGAGTAGTGGAGCTCCACAGACTACTAAAGATGGAACATTAGCTCGAAACTCAACTGAACATACTCAACCAAGGCGCGGCAAACTAG : GTAGCAGAGAAGATTTATCTTTTGATGATTCAAGAGAAGAAAGTACCGACAATGCCAAAGGTGGTTATTTGAATCACCCAGAAGGTTCTTTCTTCGAAAAGTTACATTCTTATGGGTCCAGTTCTAAATCTGAGACTAAGCAGAGTTTAGAGAGATTTTCTGATCCCAAATTAGGTGCTGTAGGTATATGTGTGGATATCTGTCTCTTGATGTACTATGCAGTTCATCAGGGTGCAGTAACAAAAACATATCTTAAATGTTACTAAGGTTTGGATGTCCTGTTAAAATTTCAAGAACCAAATACATAAGCTAGTCTGTTGCTTATACATATCTTTCAATAAGCAGAGTT</gDNA_template>
            <first_frame> P  G  T  *  R  W  C  Y  P  Y  F  F  S  W  *  G  S  C  C  L  W  R  E  P  H  D  *  R  L  S  S  C  A  V  S  R  G  I  L  G  E  S  *  K  C  F  L  S  Y  T  I  Q  S  V  K  N  A  *  C  V  Q  R  D  G  H  A  V  L  *  Q  L  F  G  C  D  C  A  S  S  F  T  Y  T  R  *  T  S  G  A  S  R  I  M  C  T  Q  S  G  G  I   : G  Y  L  E  G  N  *  Q  G  G  C  S  E  *  W  S  S  T  D  Y  *  R  W  N  I  S  S  K  L  N  *  T  Y  S  T  K  A  R  Q  T  R :   *  Q  R  R  F  I  F  *  *  F  K  R  R  K  Y  R  Q  C  Q  R  W  L  F  E  S  P  R  R  F  F  L  R  K  V  T  F  L  W  V  Q  F  *  I  *  D  *  A  E  F  R  E  I  F  *  S  Q  I  R  C  C  R  Y  M  C  G  Y  L  S  L  D  V  L  C  S  S  S  G  C  S  N  K  N  I  S  *  M  L  L  R  F  G  C  P  V  K  I  S  R  T  K  Y  I  S  *  S  V  A  Y  T  Y  L  S  I  S  R  V </first_frame>
            <second_frame>  R  G  R  E  D  G  A  T  P  T  F  S  L  G  R  G  R  A  V  S  G  G  S  P  M  I  K  G  S  L  H  V  Q  S  V  G  A  F  S  E  K  A  E  S  V  S  S  P  I  R  Y  S  R  L  K  M  L  D  V  Y  R  G  T  D  M  Q  S  C  S  N  F  S  D  V  I  V  Q  V  P  S  L  T  Q  D  E  P  L  E  P  L  A  L  C  A  P  S  Q  E  E  L  :  A  I  L  K  G  I  D  K  G  D  V  L  S  S  G  A  P  Q  T  T  K  D  G  T  L  A  R  N  S  T  E  H  T  Q  P  R  R  G  K  L   : G  S  R  E  D  L  S  F  D  D  S  R  E  E  S  T  D  N  A  K  G  G  Y  L  N  H  P  E  G  S  F  F  E  K  L  H  S  Y  G  S  S  S  K  S  E  T  K  Q  S  L  E  R  F  S  D  P  K  L  G  A  V  G  I  C  V  D  I  C  L  L  M  Y  Y  A  V  H  Q  G  A  V  T  K  T  Y  L  K  C  Y  *  G  L  D  V  L  L  K  F  Q  E  P  N  T  *  A  S  L  L  L  I  H  I  F  Q  *  A  E   </second_frame>
            <third_frame>   G  D  V  K  M  V  L  P  L  L  F  L  L  V  G  V  V  L  S  L  E  G  A  P  *  L  K  A  L  F  M  C  S  Q  S  G  H  S  R  R  K  L  K  V  F  P  L  L  Y  D  T  V  G  *  K  C  L  M  C  T  E  G  R  T  C  S  P  V  A  T  F  R  M  *  L  C  K  F  L  H  L  H  K  M  N  L  W  S  L  S  H  Y  V  H  P  V  R  R  N  W :   L  S  *  R  E  L  T  R  G  M  F  *  V  V  E  L  H  R  L  L  K  M  E  H  *  L  E  T  Q  L  N  I  L  N  Q  G  A  A  N  *  :  V  A  E  K  I  Y  L  L  M  I  Q  E  K  K  V  P  T  M  P  K  V  V  I  *  I  T  Q  K  V  L  S  S  K  S  Y  I  L  M  G  P  V  L  N  L  R  L  S  R  V  *  R  D  F  L  I  P  N  *  V  L  *  V  Y  V  W  I  S  V  S  *  C  T  M  Q  F  I  R  V  Q  *  Q  K  H  I  L  N  V  T  K  V  W  M  S  C  *  N  F  K  N  Q  I  H  K  L  V  C  C  L  Y  I  S  F  N  K  Q  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61497" stop="61198"/>
                    <exon start="61095" stop="60975"/>
                    <exon start="60857" stop="60592"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGREDGATPTFSLGRGRAVSGGSPMIKGSLHVQSVGAFSEKAESVSSPIRYSRLKMLDVYRGTDMQSCSNFSDVIVQVPSLTQDEPLEPLALCAPSQEELAILKGIDKGDVLSSGAPQTTKDGTLARNSTEHTQPRRGKLGSREDLSFDDSREESTDNAKGGYLNHPEGSFFEKLHSYGSSSKSETKQSLERFSDPKLGAVGICVDICLLMYYAVHQGAVTKTYLKCY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="65471" PGL_stop="61625"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65471" e_stop="65329"/>
            <exon e_start="62377" e_stop="62289"/>
            <exon e_start="62100" e_stop="61625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.989"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65471" e_stop="65329" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65328" i_stop="62378" i_length="2951"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="62377" e_stop="62289" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62288" i_stop="62101" i_length="188"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="62100" e_stop="61625" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65471" stop="65329"/>
              <exon start="62377" stop="62289"/>
              <exon start="62100" stop="61625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329641" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCTTCTCCCCTTCTTCCCTCCTCTCACAAAGCAGCATAAATTAGGGTTTTCTTTGAGCGCTTATTCACTTTTTCTCCTTCCGATCATCAGCCATGGGTGACAAAACGCAATTTGATTCTCGCCATAGTCAGATCTCCAAAG : ATGTGCAAGGACCCAACGATTCCATTCCGCTTTCACCGCAGTGGCTCCTGCCAAAACCAGGGGAAAGTAAGGCTGGGATGGTCACCGGG : GACAACCATCTCAATGCACATCCGGGGTATCCTATTCGTTCAGAGTTAGCAAAATTTCCTGGGATGAGTGAAGATATGCATGATAATCAAAAGAAGAAAGATGTGTTTAGGCCATCTGTGCTCGATATGGAATCAGGTCGACGGGATCGCTGGCGTGATGAAGAAAGGGACACCAATTCTGCTGTTCGAAGGGATCGCTGGAGGGAGGGAGATAAGGAGATTGGTGATGGCCGCAAGGTGGAGCGCTGGTCGGACTCCTCTGGCAGACATCATGGAGAAGTACGACGTGGTCCAGGTGAAAGATGGACCGATTCTGGAAATAGGGATAGCAATCACGATCAGCGTCGAGAGAGCAAATGGAACACGCGCTGGGGACCTGATGAGAAGGAGGCAGATGCTGTGCGTGAGAAATGGAGCAACCCTAGCAAAGATGCTGAAATGCATCTTGAGAAGGGGTCGCCAGGTCTTGCCTATCA</gDNA_template>
            <first_frame> L  L  L  P  F  F  P  P  L  T  K  Q  H  K  L  G  F  S  L  S  A  Y  S  L  F  L  L  P  I  I  S  H  G  *  Q  N  A  I  *  F  S  P  *  S  D  L  Q  R :   C  A  R  T  Q  R  F  H  S  A  F  T  A  V  A  P  A  K  T  R  G  K  *  G  W  D  G  H  R   : G  Q  P  S  Q  C  T  S  G  V  S  Y  S  F  R  V  S  K  I  S  W  D  E  *  R  Y  A  *  *  S  K  E  E  R  C  V  *  A  I  C  A  R  Y  G  I  R  S  T  G  S  L  A  *  *  R  K  G  H  Q  F  C  C  S  K  G  S  L  E  G  G  R  *  G  D  W  *  W  P  Q  G  G  A  L  V  G  L  L  W  Q  T  S  W  R  S  T  T  W  S  R  *  K  M  D  R  F  W  K  *  G  *  Q  S  R  S  A  S  R  E  Q  M  E  H  A  L  G  T  *  *  E  G  G  R  C  C  A  *  E  M  E  Q  P  *  Q  R  C  *  N  A  S  *  E  G  V  A  R  S  C  L  S </first_frame>
            <second_frame>  F  F  S  P  S  S  L  L  S  Q  S  S  I  N  *  G  F  L  *  A  L  I  H  F  F  S  F  R  S  S  A  M  G  D  K  T  Q  F  D  S  R  H  S  Q  I  S  K   : D  V  Q  G  P  N  D  S  I  P  L  S  P  Q  W  L  L  P  K  P  G  E  S  K  A  G  M  V  T  G  :  D  N  H  L  N  A  H  P  G  Y  P  I  R  S  E  L  A  K  F  P  G  M  S  E  D  M  H  D  N  Q  K  K  K  D  V  F  R  P  S  V  L  D  M  E  S  G  R  R  D  R  W  R  D  E  E  R  D  T  N  S  A  V  R  R  D  R  W  R  E  G  D  K  E  I  G  D  G  R  K  V  E  R  W  S  D  S  S  G  R  H  H  G  E  V  R  R  G  P  G  E  R  W  T  D  S  G  N  R  D  S  N  H  D  Q  R  R  E  S  K  W  N  T  R  W  G  P  D  E  K  E  A  D  A  V  R  E  K  W  S  N  P  S  K  D  A  E  M  H  L  E  K  G  S  P  G  L  A  Y   </second_frame>
            <third_frame>   S  S  P  L  L  P  S  S  H  K  A  A  *  I  R  V  F  F  E  R  L  F  T  F  S  P  S  D  H  Q  P  W  V  T  K  R  N  L  I  L  A  I  V  R  S  P  K  :  M  C  K  D  P  T  I  P  F  R  F  H  R  S  G  S  C  Q  N  Q  G  K  V  R  L  G  W  S  P  G :   T  T  I  S  M  H  I  R  G  I  L  F  V  Q  S  *  Q  N  F  L  G  *  V  K  I  C  M  I  I  K  R  R  K  M  C  L  G  H  L  C  S  I  W  N  Q  V  D  G  I  A  G  V  M  K  K  G  T  P  I  L  L  F  E  G  I  A  G  G  R  E  I  R  R  L  V  M  A  A  R  W  S  A  G  R  T  P  L  A  D  I  M  E  K  Y  D  V  V  Q  V  K  D  G  P  I  L  E  I  G  I  A  I  T  I  S  V  E  R  A  N  G  T  R  A  G  D  L  M  R  R  R  Q  M  L  C  V  R  N  G  A  T  L  A  K  M  L  K  C  I  L  R  R  G  R  Q  V  L  P  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65413" stop="65329"/>
                    <exon start="62377" stop="62289"/>
                    <exon start="62100" stop="61627"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALIHFFSFRSSAMGDKTQFDSRHSQISKDVQGPNDSIPLSPQWLLPKPGESKAGMVTGDNHLNAHPGYPIRSELAKFPGMSEDMHDNQKKKDVFRPSVLDMESGRRDRWRDEERDTNSAVRRDRWREGDKEIGDGRKVERWSDSSGRHHGEVRRGPGERWTDSGNRDSNHDQRRESKWNTRWGPDEKEADAVREKWSNPSKDAEMHLEKGSPGLAY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="67618" PGL_stop="69463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67618" e_stop="67828"/>
            <exon e_start="69017" e_stop="69108"/>
            <exon e_start="69203" e_stop="69463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="67618" e_stop="67828" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67829" i_stop="69016" i_length="1188"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69017" e_stop="69108" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="69109" i_stop="69202" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="69203" e_stop="69463" e_length="261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67618" stop="67828"/>
              <exon start="69017" stop="69108"/>
              <exon start="69203" stop="69463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341111" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTTTAAACAATTTTATTGTTTGGTAATATAATTTACTAATTATGGCAGAGGAAAAGAAGTTCACAAATTTTGCAGTCCAAAATGGATCAGTTGATATTTGTGAAGTCATAAAGAGTTATATACCATTCTTGAATGTGAGAAGATTATCAGAAAATGCCACTTTGCCCAAAAGAATGTTCCCTCATTCTGCAGCTTATGATCTTTTCAG : TGCAAGGGACGTTATGGTGCCAGCACGAGGCAAGGCAAAAGTTGCCACTGACTTAAGCATAGACTTACCTCCAGGAACCTATGGTCGTGTCG : CTGCAAGATCAAGTTTGTCTTGGCATCGTTCCATTGATGTTGGAGGTGGTGTGGTTGATTTAGACAAAAATCCTGTTTTCGTGATACTGTTCAACCATTCTGATGTTGATTTCGAGGTGAAAGTTGGCGATAACATAGCACAGCTAGTCATTGAGCTCCATGCTATACCTGAGATTGTTGAGGTTTATCAATAATTATAATGTGGGGTTTGAATTTGCTGGAGCAGCTTTATGTCTGTGTATGTTATGCAGTTGTTATGTT</gDNA_template>
            <first_frame> K  F  *  T  I  L  L  F  G  N  I  I  Y  *  L  W  Q  R  K  R  S  S  Q  I  L  Q  S  K  M  D  Q  L  I  F  V  K  S  *  R  V  I  Y  H  S  *  M  *  E  D  Y  Q  K  M  P  L  C  P  K  E  C  S  L  I  L  Q  L  M  I  F  S   : V  Q  G  T  L  W  C  Q  H  E  A  R  Q  K  L  P  L  T  *  A  *  T  Y  L  Q  E  P  M  V  V  S  :  L  Q  D  Q  V  C  L  G  I  V  P  L  M  L  E  V  V  W  L  I  *  T  K  I  L  F  S  *  Y  C  S  T  I  L  M  L  I  S  R  *  K  L  A  I  T  *  H  S  *  S  L  S  S  M  L  Y  L  R  L  L  R  F  I  N  N  Y  N  V  G  F  E  F  A  G  A  A  L  C  L  C  M  L  C  S  C  Y  V </first_frame>
            <second_frame>  N  F  K  Q  F  Y  C  L  V  I  *  F  T  N  Y  G  R  G  K  E  V  H  K  F  C  S  P  K  W  I  S  *  Y  L  *  S  H  K  E  L  Y  T  I  L  E  C  E  K  I  I  R  K  C  H  F  A  Q  K  N  V  P  S  F  C  S  L  *  S  F  Q  :  C  K  G  R  Y  G  A  S  T  R  Q  G  K  S  C  H  *  L  K  H  R  L  T  S  R  N  L  W  S  C  R :   C  K  I  K  F  V  L  A  S  F  H  *  C  W  R  W  C  G  *  F  R  Q  K  S  C  F  R  D  T  V  Q  P  F  *  C  *  F  R  G  E  S  W  R  *  H  S  T  A  S  H  *  A  P  C  Y  T  *  D  C  *  G  L  S  I  I  I  M  W  G  L  N  L  L  E  Q  L  Y  V  C  V  C  Y  A  V  V  M   </second_frame>
            <third_frame>   I  L  N  N  F  I  V  W  *  Y  N  L  L  I  M  A  E  E  K  K  F  T  N  F  A  V  Q  N  G  S  V  D  I  C  E  V  I  K  S  Y  I  P  F  L  N  V  R  R  L  S  E  N  A  T  L  P  K  R  M  F  P  H  S  A  A  Y  D  L  F  S :   A  R  D  V  M  V  P  A  R  G  K  A  K  V  A  T  D  L  S  I  D  L  P  P  G  T  Y  G  R  V   : A  A  R  S  S  L  S  W  H  R  S  I  D  V  G  G  G  V  V  D  L  D  K  N  P  V  F  V  I  L  F  N  H  S  D  V  D  F  E  V  K  V  G  D  N  I  A  Q  L  V  I  E  L  H  A  I  P  E  I  V  E  V  Y  Q  *  L  *  C  G  V  *  I  C  W  S  S  F  M  S  V  Y  V  M  Q  L  L  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67647" stop="67828"/>
                    <exon start="69017" stop="69108"/>
                    <exon start="69203" stop="69396"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNLLIMAEEKKFTNFAVQNGSVDICEVIKSYIPFLNVRRLSENATLPKRMFPHSAAYDLFSARDVMVPARGKAKVATDLSIDLPPGTYGRVAARSSLSWHRSIDVGGGVVDLDKNPVFVILFNHSDVDFEVKVGDNIAQLVIELHAIPEIVEVYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="76490" PGL_stop="73595"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76490" e_stop="76298"/>
            <exon e_start="76132" e_stop="75468"/>
            <exon e_start="74661" e_stop="74335"/>
            <exon e_start="73936" e_stop="73595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.984"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="1.000" acc_prob="0.908" e_score="0.994"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="76490" e_stop="76298" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="76297" i_stop="76133" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="76132" e_stop="75468" e_length="665"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75467" i_stop="74662" i_length="806"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="74661" e_stop="74335" e_length="327"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.908">
            <gDNA_intron_boundary i_start="74334" i_stop="73937" i_length="398"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="73936" e_stop="73595" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76490" stop="76298"/>
              <exon start="76132" stop="75468"/>
              <exon start="74661" stop="74335"/>
              <exon start="73936" stop="73595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316660" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGAATCTAAACACCTTTGAAGTTTCTTTTGTATGCTCTGTTTTTGTACTTTGTACTTCAAAAAGCTATCTCTATTTATACTTCTTCTCCGTCAATTATTTTTCACCATCAAATTAACATCCATGGCTAATTTGCTTCACAATTCATCCTTCTTCCTTCTTCTCTGTCTCTTGCATTTCGTACTCGTCGCGA : AATCGCAGTCATTTATTGGTATAAATTATGGCCAAGTTGCGGATAATTTACCGGCACCGGAGGCAACAGCCAAGTTACTACAATCAACTTCAATTCAAAAAGTCCGGTTATACGGATCCGACCCGGCAATTATCAAAGCTTTAGCAAATACCGGTATCGGAATCATGATCGGAGTAGCCAACGGTGATATTCCGGCGATGGCATCAGACCCGAACTTCGCAAAAGGATGGCTGAGTTCAAACGTGCTTCCGTTTTACCCGGCGAGTGAAATTATCGTAATTAACGTCGGAAATGAGGTTATGTCTTCAAATGATCAGAATCTGATGACGAATTTGTTGCCGGCGATGCAAAATTTACGAAAAGCCCTAAATGATGTTTCAATTGGAGGGAAAATTAAGGTCTCTACGGTTCATTCTATGGCGGTTATGAAGCAATCGGATCCTCCGTCTTCTGGAAGTTTCGACCCGAATATTGGGGATTTGTTGAAAGGATTGTTGGAGTTCAATAAAGCTACTGGTTCTCCTTTCGCCATTAATCCTTATCCGTTTTTCGCTTATCAGAGTGATCCTAGACCTGATACTTTAGCTTTTTGCTTGTTTCAACCTAATGCTGGTCGAGTTGATGCTGGCACCAAGATCAAGTACACCAACATGTTCGATGCTCAG : GTGGATGCAATAAGAGCAGCGCTTAACGCTATGGGATTCAAGGAAGTAGAGATTGTGATTGCGGAAACAGGGTGGCCTTATAAGGGAGACAGCAATGAAGTTGGTCCAAGTATTGAGAATGCAAAGGCTTACAATGGCAATTTGATTGCTCACTTGAGGTCAATGGTTGGTACTCCTTTGATGCCTGGCAAATCAGTAGATACCTATCTCTTTGCCATATATGATGAGGATCTCAAACCAGGACCAACTTCTGAGCGATCCTTCGGACTTTTTAAGCCTGATTTAACCATGAGTTATGATATTGGACTTTCTAAAGCCAACAACCAG : GTTCCAACACCAAAAACTCCGGTGTCTCCCTCGCCAAATGCATCCCCAAAAGCTCCTGTGTCTCTCTCACCAAATCCAGCACCAAAAGCTCCGGTGACTCCCACACTGGTTCCAACGCCAAACACCACAGTGACTCCCCCGTCACCAAAGACAGAGAAAAGTGTCAAGGCAGGTGTATCAGATTCTCAATCGCAAGCAAATATCAACGTAGGGATGCTTGTTTTGAGCCAAATACTGTGGTACCCCATGCTGCATATGCGATAAATCTCTTTACCAAAATTCAGTAAAGAATGTTTGAACTGACAGCATCTCTCTCATCAACGTGTCCTAGTAAGCTGCTGA</gDNA_template>
            <first_frame> E  E  S  K  H  L  *  S  F  F  C  M  L  C  F  C  T  L  Y  F  K  K  L  S  L  F  I  L  L  L  R  Q  L  F  F  T  I  K  L  T  S  M  A  N  L  L  H  N  S  S  F  F  L  L  L  C  L  L  H  F  V  L  V  A   : K  S  Q  S  F  I  G  I  N  Y  G  Q  V  A  D  N  L  P  A  P  E  A  T  A  K  L  L  Q  S  T  S  I  Q  K  V  R  L  Y  G  S  D  P  A  I  I  K  A  L  A  N  T  G  I  G  I  M  I  G  V  A  N  G  D  I  P  A  M  A  S  D  P  N  F  A  K  G  W  L  S  S  N  V  L  P  F  Y  P  A  S  E  I  I  V  I  N  V  G  N  E  V  M  S  S  N  D  Q  N  L  M  T  N  L  L  P  A  M  Q  N  L  R  K  A  L  N  D  V  S  I  G  G  K  I  K  V  S  T  V  H  S  M  A  V  M  K  Q  S  D  P  P  S  S  G  S  F  D  P  N  I  G  D  L  L  K  G  L  L  E  F  N  K  A  T  G  S  P  F  A  I  N  P  Y  P  F  F  A  Y  Q  S  D  P  R  P  D  T  L  A  F  C  L  F  Q  P  N  A  G  R  V  D  A  G  T  K  I  K  Y  T  N  M  F  D  A  Q  :  V  D  A  I  R  A  A  L  N  A  M  G  F  K  E  V  E  I  V  I  A  E  T  G  W  P  Y  K  G  D  S  N  E  V  G  P  S  I  E  N  A  K  A  Y  N  G  N  L  I  A  H  L  R  S  M  V  G  T  P  L  M  P  G  K  S  V  D  T  Y  L  F  A  I  Y  D  E  D  L  K  P  G  P  T  S  E  R  S  F  G  L  F  K  P  D  L  T  M  S  Y  D  I  G  L  S  K  A  N  N  Q  :  V  P  T  P  K  T  P  V  S  P  S  P  N  A  S  P  K  A  P  V  S  L  S  P  N  P  A  P  K  A  P  V  T  P  T  L  V  P  T  P  N  T  T  V  T  P  P  S  P  K  T  E  K  S  V  K  A  G  V  S  D  S  Q  S  Q  A  N  I  N  V  G  M  L  V  L  S  Q  I  L  W  Y  P  M  L  H  M  R  *  I  S  L  P  K  F  S  K  E  C  L  N  *  Q  H  L  S  H  Q  R  V  L  V  S  C  * </first_frame>
            <second_frame>  K  N  L  N  T  F  E  V  S  F  V  C  S  V  F  V  L  C  T  S  K  S  Y  L  Y  L  Y  F  F  S  V  N  Y  F  S  P  S  N  *  H  P  W  L  I  C  F  T  I  H  P  S  S  F  F  S  V  S  C  I  S  Y  S  S  R  :  N  R  S  H  L  L  V  *  I  M  A  K  L  R  I  I  Y  R  H  R  R  Q  Q  P  S  Y  Y  N  Q  L  Q  F  K  K  S  G  Y  T  D  P  T  R  Q  L  S  K  L  *  Q  I  P  V  S  E  S  *  S  E  *  P  T  V  I  F  R  R  W  H  Q  T  R  T  S  Q  K  D  G  *  V  Q  T  C  F  R  F  T  R  R  V  K  L  S  *  L  T  S  E  M  R  L  C  L  Q  M  I  R  I  *  *  R  I  C  C  R  R  C  K  I  Y  E  K  P  *  M  M  F  Q  L  E  G  K  L  R  S  L  R  F  I  L  W  R  L  *  S  N  R  I  L  R  L  L  E  V  S  T  R  I  L  G  I  C  *  K  D  C  W  S  S  I  K  L  L  V  L  L  S  P  L  I  L  I  R  F  S  L  I  R  V  I  L  D  L  I  L  *  L  F  A  C  F  N  L  M  L  V  E  L  M  L  A  P  R  S  S  T  P  T  C  S  M  L  R :   W  M  Q  *  E  Q  R  L  T  L  W  D  S  R  K  *  R  L  *  L  R  K  Q  G  G  L  I  R  E  T  A  M  K  L  V  Q  V  L  R  M  Q  R  L  T  M  A  I  *  L  L  T  *  G  Q  W  L  V  L  L  *  C  L  A  N  Q  *  I  P  I  S  L  P  Y  M  M  R  I  S  N  Q  D  Q  L  L  S  D  P  S  D  F  L  S  L  I  *  P  *  V  M  I  L  D  F  L  K  P  T  T  R :   F  Q  H  Q  K  L  R  C  L  P  R  Q  M  H  P  Q  K  L  L  C  L  S  H  Q  I  Q  H  Q  K  L  R  *  L  P  H  W  F  Q  R  Q  T  P  Q  *  L  P  R  H  Q  R  Q  R  K  V  S  R  Q  V  Y  Q  I  L  N  R  K  Q  I  S  T  *  G  C  L  F  *  A  K  Y  C  G  T  P  C  C  I  C  D  K  S  L  Y  Q  N  S  V  K  N  V  *  T  D  S  I  S  L  I  N  V  S  *  *  A  A   </second_frame>
            <third_frame>   R  I  *  T  P  L  K  F  L  L  Y  A  L  F  L  Y  F  V  L  Q  K  A  I  S  I  Y  T  S  S  P  S  I  I  F  H  H  Q  I  N  I  H  G  *  F  A  S  Q  F  I  L  L  P  S  S  L  S  L  A  F  R  T  R  R  E :   I  A  V  I  Y  W  Y  K  L  W  P  S  C  G  *  F  T  G  T  G  G  N  S  Q  V  T  T  I  N  F  N  S  K  S  P  V  I  R  I  R  P  G  N  Y  Q  S  F  S  K  Y  R  Y  R  N  H  D  R  S  S  Q  R  *  Y  S  G  D  G  I  R  P  E  L  R  K  R  M  A  E  F  K  R  A  S  V  L  P  G  E  *  N  Y  R  N  *  R  R  K  *  G  Y  V  F  K  *  S  E  S  D  D  E  F  V  A  G  D  A  K  F  T  K  S  P  K  *  C  F  N  W  R  E  N  *  G  L  Y  G  S  F  Y  G  G  Y  E  A  I  G  S  S  V  F  W  K  F  R  P  E  Y  W  G  F  V  E  R  I  V  G  V  Q  *  S  Y  W  F  S  F  R  H  *  S  L  S  V  F  R  L  S  E  *  S  *  T  *  Y  F  S  F  L  L  V  S  T  *  C  W  S  S  *  C  W  H  Q  D  Q  V  H  Q  H  V  R  C  S   : G  G  C  N  K  S  S  A  *  R  Y  G  I  Q  G  S  R  D  C  D  C  G  N  R  V  A  L  *  G  R  Q  Q  *  S  W  S  K  Y  *  E  C  K  G  L  Q  W  Q  F  D  C  S  L  E  V  N  G  W  Y  S  F  D  A  W  Q  I  S  R  Y  L  S  L  C  H  I  *  *  G  S  Q  T  R  T  N  F  *  A  I  L  R  T  F  *  A  *  F  N  H  E  L  *  Y  W  T  F  *  S  Q  Q  P   : G  S  N  T  K  N  S  G  V  S  L  A  K  C  I  P  K  S  S  C  V  S  L  T  K  S  S  T  K  S  S  G  D  S  H  T  G  S  N  A  K  H  H  S  D  S  P  V  T  K  D  R  E  K  C  Q  G  R  C  I  R  F  S  I  A  S  K  Y  Q  R  R  D  A  C  F  E  P  N  T  V  V  P  H  A  A  Y  A  I  N  L  F  T  K  I  Q  *  R  M  F  E  L  T  A  S  L  S  S  T  C  P  S  K  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76469" stop="76298"/>
                    <exon start="76132" stop="75468"/>
                    <exon start="74661" stop="74335"/>
                    <exon start="73936" stop="73673"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1425</number_coding_nucleotides>
                  <number_encoded_amino_acids>475</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFCMLCFCTLYFKKLSLFILLLRQLFFTIKLTSMANLLHNSSFFLLLCLLHFVLVAKSQSFIGINYGQVADNLPAPEATAKLLQSTSIQKVRLYGSDPAIIKALANTGIGIMIGVANGDIPAMASDPNFAKGWLSSNVLPFYPASEIIVINVGNEVMSSNDQNLMTNLLPAMQNLRKALNDVSIGGKIKVSTVHSMAVMKQSDPPSSGSFDPNIGDLLKGLLEFNKATGSPFAINPYPFFAYQSDPRPDTLAFCLFQPNAGRVDAGTKIKYTNMFDAQVDAIRAALNAMGFKEVEIVIAETGWPYKGDSNEVGPSIENAKAYNGNLIAHLRSMVGTPLMPGKSVDTYLFAIYDEDLKPGPTSERSFGLFKPDLTMSYDIGLSKANNQVPTPKTPVSPSPNASPKAPVSLSPNPAPKAPVTPTLVPTPNTTVTPPSPKTEKSVKAGVSDSQSQANINVGMLVLSQILWYPMLHMR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="82340" PGL_stop="81312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82340" e_stop="82009"/>
            <exon e_start="81877" e_stop="81781"/>
            <exon e_start="81545" e_stop="81468"/>
            <exon e_start="81375" e_stop="81312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.707" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82340" e_stop="82009" e_length="332"/>
          </exon>
          <intron i_serial="1" don_prob="0.707" acc_prob="0.993">
            <gDNA_intron_boundary i_start="82008" i_stop="81878" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81877" e_stop="81781" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.964">
            <gDNA_intron_boundary i_start="81780" i_stop="81546" i_length="235"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81545" e_stop="81468" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81467" i_stop="81376" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="81375" e_stop="81312" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82340" stop="82009"/>
              <exon start="81877" stop="81781"/>
              <exon start="81545" stop="81468"/>
              <exon start="81375" stop="81312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCCATCCACAGATAGGATGGATCATCATAACAAAATTCATAGAACTGAGACCTCTCCGAAAATAGATGAGTTATCCCCAACTTTGCAAGACACAGAGCTGCAGAAGGATGACAAAAGCTGCTCTGGTGGAGCAGAACAGTCAACTGAAAGCCAGACAAGAGAAGCAAATGCAGACAACATAGGATCTAATGAGCCAGATGTGAGCATGGAGATACTCGACTTCCAAACCGAGCTACTTGGTAAAATAGAGAACAGTACCTCGTGCAACACAATTATGGAAAAGGAATGTGACAACCTGACAGATTCTGGAACTGTGATTTCAAATGAAAAT : CATCAAGAAAAAACGCCACAAGAAGTTGAAATATCCATGGACCAGAAAGTCAGAGAAGATAGGCCAAAGATATTACAAGCTACAGACCAATTTAATG : GGATTCATCAAGAAGCCTCACAGAACAGTAAACTTTTCTATGATGAACAAAATAAAAGTTTTCCTGCCAAATTTACAG : GAAAAGGAGGTATAAAAATCTCCAATGTTGTTAGAAATGATCAAGAAACAGCTCTCACATTAGT</gDNA_template>
            <first_frame> C  H  P  Q  I  G  W  I  I  I  T  K  F  I  E  L  R  P  L  R  K  *  M  S  Y  P  Q  L  C  K  T  Q  S  C  R  R  M  T  K  A  A  L  V  E  Q  N  S  Q  L  K  A  R  Q  E  K  Q  M  Q  T  T  *  D  L  M  S  Q  M  *  A  W  R  Y  S  T  S  K  P  S  Y  L  V  K  *  R  T  V  P  R  A  T  Q  L  W  K  R  N  V  T  T  *  Q  I  L  E  L  *  F  Q  M  K  I :   I  K  K  K  R  H  K  K  L  K  Y  P  W  T  R  K  S  E  K  I  G  Q  R  Y  Y  K  L  Q  T  N  L  M  :  G  F  I  K  K  P  H  R  T  V  N  F  S  M  M  N  K  I  K  V  F  L  P  N  L  Q  :  E  K  E  V  *  K  S  P  M  L  L  E  M  I  K  K  Q  L  S  H  *  </first_frame>
            <second_frame>  A  I  H  R  *  D  G  S  S  *  Q  N  S  *  N  *  D  L  S  E  N  R  *  V  I  P  N  F  A  R  H  R  A  A  E  G  *  Q  K  L  L  W  W  S  R  T  V  N  *  K  P  D  K  R  S  K  C  R  Q  H  R  I  *  *  A  R  C  E  H  G  D  T  R  L  P  N  R  A  T  W  *  N  R  E  Q  Y  L  V  Q  H  N  Y  G  K  G  M  *  Q  P  D  R  F  W  N  C  D  F  K  *  K   : S  S  R  K  N  A  T  R  S  *  N  I  H  G  P  E  S  Q  R  R  *  A  K  D  I  T  S  Y  R  P  I  *  W :   D  S  S  R  S  L  T  E  Q  *  T  F  L  *  *  T  K  *  K  F  S  C  Q  I  Y  R :   K  R  R  Y  K  N  L  Q  C  C  *  K  *  S  R  N  S  S  H  I  S </second_frame>
            <third_frame>   P  S  T  D  R  M  D  H  H  N  K  I  H  R  T  E  T  S  P  K  I  D  E  L  S  P  T  L  Q  D  T  E  L  Q  K  D  D  K  S  C  S  G  G  A  E  Q  S  T  E  S  Q  T  R  E  A  N  A  D  N  I  G  S  N  E  P  D  V  S  M  E  I  L  D  F  Q  T  E  L  L  G  K  I  E  N  S  T  S  C  N  T  I  M  E  K  E  C  D  N  L  T  D  S  G  T  V  I  S  N  E  N  :  H  Q  E  K  T  P  Q  E  V  E  I  S  M  D  Q  K  V  R  E  D  R  P  K  I  L  Q  A  T  D  Q  F  N   : G  I  H  Q  E  A  S  Q  N  S  K  L  F  Y  D  E  Q  N  K  S  F  P  A  K  F  T   : G  K  G  G  I  K  I  S  N  V  V  R  N  D  Q  E  T  A  L  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82338" stop="82009"/>
                    <exon start="81877" stop="81781"/>
                    <exon start="81545" stop="81468"/>
                    <exon start="81375" stop="81314"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSTDRMDHHNKIHRTETSPKIDELSPTLQDTELQKDDKSCSGGAEQSTESQTREANADNIGSNEPDVSMEILDFQTELLGKIENSTSCNTIMEKECDNLTDSGTVISNENHQEKTPQEVEISMDQKVREDRPKILQATDQFNGIHQEASQNSKLFYDEQNKSFPAKFTGKGGIKISNVVRNDQETALTL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="90135" PGL_stop="93062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90135" e_stop="90533"/>
            <exon e_start="90635" e_stop="92466"/>
            <exon e_start="92580" e_stop="93062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.545" acc_prob="0.985" e_score="0.997"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="0.993"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="90135" e_stop="90533" e_length="399"/>
          </exon>
          <intron i_serial="1" don_prob="0.545" acc_prob="0.985">
            <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="90635" e_stop="92466" e_length="1832"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="0.975">
            <gDNA_exon_boundary e_start="92580" e_stop="93062" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90135" stop="90533"/>
              <exon start="90635" stop="92466"/>
              <exon start="92580" stop="92940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90156" stop="90533"/>
              <exon start="90635" stop="90714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90157" stop="90387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91017" stop="92466"/>
              <exon start="92580" stop="93062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91166" stop="91500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91304" stop="91713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333554" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACCTTTTCCCTCTACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG : GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAGGTACATAATCAATTTTACATTATCAGCATCCATATATTAATTACTTTTCCTCTATAATCACCTACACAGTAATGGTAATATCTCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAAGAACGAATGTATTTCAAAAACGAAAATATTGACACCTTTTAAGTAAGTATTAACAACTAAAAGACCAATCGTTAGACCAATTATTCTGTGACGCATCAACTTTAAGTTGCGTTAGCTTAAGCCTCGTGCTAGTAATTATTTAGCCGTCTAGCTGTCAAACTTGAACTATTATTTGAATATTAGTAGGTTTTTTTCAGGTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG : TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACTGTGAGTTTCAGTTTTCGCTCTATTTTTTTATTTATTTCTAGAGTATGTCCGTGTTTGCCGGAGATGTTGTCCCATGGAAGTATTTGTTGAGATTAGCATGGGGTGTGTCCTTTGGCGTAAAAGGTTTTACGTCATTTTAGTATTATAATATACTATCGAGTTATTGTGGTTACGATTATTTTAGATTTTTATACCTTTTTGGGGACTGTAACATGAAAGTTGTACTCACTCACGAGTTTGATCAAATACTTTTTTCTTAAAGAGTGTTCGTTATTATAACTCTGAAAGTTTGTTTTAAACCA</gDNA_template>
            <first_frame> I  P  F  P  S  T  P  I  F  F  F  S  P  D  L  F  *  V  V  Y  L  L  Q  I  L  *  S  D  L  C  R  S  L  L  D  L  R  F  G  Y  G  F  A  A  F  L  Y  R  T  A  V  V  L  Y  R  T  G  D  *  R  A  V  W  M  D  G  S  I  F  V  C  S  G  R  R  L  T  K  R  W  W  I  *  C  V  C  V  F  V  W  D  R  *  A  *  S  S  I  R  S  V  R  S  *  *  I  C  G  D  W  R  R  S  F  S  N  L  D  V  I  I  A  R  V  Q  P  L  C  A  R  D  L  L  :  V  *  R  *  M  Q  G  L  S  V  L  F  V  V  V  I  D  Q  A  L  L  T  G  Y  H  R  R  R  L  N  H  R  T  L  W  *  I  Q  G  Y  D  G  L  I  L  M  F  I  I  I  *  M  F  Y  L  L  K  F  L  S  M  H  A  H  V  R  E  I  K  E  *  V  E  V  V  R  G  L  R  G  K  K  *  G  V  Y  C  F  M  L  P  G  L  C  H  V  G  C  A  R  M  A  G  Q  K  Y  L  I  K  L  Y  F  L  V  L  E  R  R  G  T  G  F  C  L  D  L  L  S  V  C  V  A  S  F  I  F  S  C  S  F  P  A  P  A  S  N  N  L  A  P  I  Q  W  L  L  V  F  Y  G  Q  V  I  R  V  E  L  L  N  M  A  M  D  K  A  T  F  L  L  L  H  S  S  E  V  H  N  Q  F  Y  I  I  S  I  H  I  L  I  T  F  P  L  *  S  P  T  Q  *  W  *  Y  L  *  S  I  V  V  E  S  F  N  K  P  H  K  A  *  S  F  I  C  S  H  I  Q  L  I  I  E  A  A  L  N  Y  V  I  K  Y  F  G  W  S  P  L  S  T  L  C  L  Y  P  I  *  P  *  F  L  I  T  *  G  S  C  T  Y  F  S  R  T  N  V  F  Q  K  R  K  Y  *  H  L  L  S  K  Y  *  Q  L  K  D  Q  S  L  D  Q  L  F  C  D  A  S  T  L  S  C  V  S  L  S  L  V  L  V  I  I  *  P  S  S  C  Q  T  *  T  I  I  *  I  L  V  G  F  F  Q  V  N  K  I  R  I  *  N  M  S  C  K  K  P  S  K  N  K  F  C  V  R  T  I  V  M  A  *  P  R  L  Q  L  C  L  F  L  L  M  A  V  L  F  H  L  F  S  R  L  F  H  L  E  I  T  S  L  W  M  S  *  F  L  L  S  *  F  Y  S  R  S  S  C  G  E  P  L  C  F  F  *  I  V  M  *  M  F  Q  S  M  E  M  P  I  M  A  P  L  L  C  S  L  L  G  S  V  F  *  A  G  L  G  F  *  L  L  N  *  F  R  V  L  G  R  S  C  I  *  L  D  D  G  K  F  A  T  *  N  L  G  I  S  L  F  L  I  H  A  V  W  G  P  T  L  W  W  G  V  L  L  S  *  C  M  D  V  L  P  G  A  F  *  F  C  L  C  C  C  C  C  *  S  *  R  S  E  D  A  F  A  A  V  G  S  *  I  I  L  V  T  L  L  G  C  S  C  Y  I  W  K  H  S  T  F  N  S  *  T  C  C  C  C  L  S  E  S  V  V  C  I  I  N  T  V  W  *  P  G  H  S  S  P  D  I  L  H  S  K  L  *  Q  I  N  F  L  P  W  G  F  I  K  H  I  M  M  L  L  M  S :   S  D  C  F  Y  *  S  G  C  K  A  C  F  H  D  I  *  Q  F  T  V  L  M  K  T  M  R  C  I  *  F  L  L  F  *  R  C  *  F  A  V  P  N  G  L  Q  F  H  L  F  N  I  E  V  I  I  F  G  F  T  V  S  F  S  F  R  S  I  F  L  F  I  S  R  V  C  P  C  L  P  E  M  L  S  H  G  S  I  C  *  D  *  H  G  V  C  P  L  A  *  K  V  L  R  H  F  S  I  I  I  Y  Y  R  V  I  V  V  T  I  I  L  D  F  Y  T  F  L  G  T  V  T  *  K  L  Y  S  L  T  S  L  I  K  Y  F  F  L  K  E  C  S  L  L  *  L  *  K  F  V  L  N   </first_frame>
            <second_frame>  Y  L  F  P  L  R  L  S  S  S  F  L  Q  I  S  S  K  *  F  I  F  S  K  F  Y  D  Q  I  C  V  D  R  C  L  I  Y  V  L  D  M  D  L  P  R  F  C  T  G  P  P  W  F  C  T  G  P  A  T  D  G  P  Y  G  W  M  V  R  Y  L  F  V  L  A  D  G  *  R  R  D  G  G  S  D  V  F  V  C  S  F  G  I  D  E  H  S  R  A  S  D  L  F  G  L  N  R  F  V  E  I  G  E  E  V  S  A  T  L  M  L  S  S  R  G  F  N  R  C  A  Q  E  I  Y  W :   F  E  D  R  C  K  D  Y  R  F  C  S  L  L  S  *  I  K  L  F  *  P  V  I  I  G  E  G  *  I  I  E  R  Y  G  E  S  K  V  M  M  V  *  F  *  C  L  *  L  F  K  C  F  I  C  L  S  F  Y  R  C  M  H  M  Y  E  R  *  K  N  E  L  R  L  C  E  V  *  E  E  K  S  E  V  F  T  V  L  C  C  Q  A  F  A  M  L  G  A  L  A  W  Q  A  K  S  T  *  *  N  Y  I  F  W  C  W  R  G  E  A  Q  G  F  A  W  I  S  S  L  C  V  S  P  L  L  F  F  H  V  L  S  L  L  L  R  P  T  I  S  H  R  S  S  G  Y  L  F  F  M  D  K  L  F  V  L  N  C  L  I  W  R  W  T  K  Q  R  F  Y  C  C  T  P  Q  R  Y  I  I  N  F  T  L  S  A  S  I  Y  *  L  L  F  L  Y  N  H  L  H  S  N  G  N  I  S  N  Q  *  L  *  N  H  S  T  S  R  T  K  L  S  L  L  Y  V  V  T  Y  S  *  L  L  K  Q  L  *  T  M  S  *  N  I  L  A  G  L  P  S  Q  L  Y  V  Y  I  Q  Y  N  H  D  F  *  *  L  R  V  H  V  H  I  F  Q  E  R  M  Y  F  K  N  E  N  I  D  T  F  *  V  S  I  N  N  *  K  T  N  R  *  T  N  Y  S  V  T  H  Q  L  *  V  A  L  A  *  A  S  C  *  *  L  F  S  R  L  A  V  K  L  E  L  L  F  E  Y  *  *  V  F  F  R  *  T  R  F  A  S  K  I  C  H  V  K  S  H  L  K  I  S  S  A  *  E  P  L  S  W  H  N  Q  G  F  N  Y  V  S  S  C  *  W  L  F  F  F  I  C  S  H  G  S  F  T  W  K  L  L  R  C  G  *  V  N  S  F  *  V  N  S  I  V  G  V  V  V  E  S  H  F  V  S  F  K  S  *  C  K  C  F  N  L  W  R  C  R  L  W  L  P  F  C  V  A  F  W  E  V  Y  F  R  Q  V  W  D  F  D  C  *  I  N  S  V  Y  W  V  D  L  V  S  D  W  M  M  E  N  L  Q  L  R  T  W  E  Y  L  C  F  *  F  M  L  S  G  V  P  P  C  G  G  E  C  C  S  V  D  A  W  M  F  Y  L  V  R  S  S  F  V  C  A  V  A  A  V  E  V  E  D  L  K  M  R  L  L  L  L  E  V  K  S  F  W  S  H  C  W  V  V  P  V  T  F  G  N  T  Q  L  L  T  P  K  L  V  A  V  A  C  L  N  L  S  C  A  S  L  T  Q  Y  G  S  L  V  I  L  L  L  I  Y  C  T  Q  S  C  S  R  *  I  F  S  L  G  V  L  L  S  I  L  *  C  Y  S  *   : V  P  I  V  S  T  R  V  D  V  R  H  V  F  M  I  Y  D  N  S  Q  F  S  *  R  P  C  G  A  F  N  F  S  S  F  E  D  A  D  L  P  Y  L  M  V  C  S  S  I  Y  S  I  L  K  L  L  F  L  V  L  L  *  V  S  V  F  A  L  F  F  Y  L  F  L  E  Y  V  R  V  C  R  R  C  C  P  M  E  V  F  V  E  I  S  M  G  C  V  L  W  R  K  R  F  Y  V  I  L  V  L  *  Y  T  I  E  L  L  W  L  R  L  F  *  I  F  I  P  F  W  G  L  *  H  E  S  C  T  H  S  R  V  *  S  N  T  F  F  L  K  S  V  R  Y  Y  N  S  E  S  L  F  *  T  </second_frame>
            <third_frame>   T  F  S  L  Y  A  Y  L  L  L  F  S  R  S  L  L  S  S  L  S  S  P  N  F  M  I  R  S  V  *  I  V  A  *  S  T  F  W  I  W  I  C  R  V  S  V  P  D  R  R  G  F  V  P  D  R  R  L  T  G  R  M  D  G  W  F  D  I  C  L  F  W  P  T  V  D  E  E  M  V  D  L  M  C  L  C  V  R  L  G  *  M  S  I  V  E  H  Q  I  C  S  V  L  I  D  L  W  R  L  E  K  K  F  Q  Q  P  *  C  Y  H  R  E  G  S  T  V  V  R  K  R  F  I   : G  L  K  I  D  A  R  T  I  G  F  V  R  C  C  H  R  S  S  S  F  D  R  L  S  S  A  K  V  E  S  *  N  V  M  V  N  P  R  L  *  W  F  N  F  D  V  Y  N  Y  L  N  V  L  F  A  *  V  F  I  D  A  C  T  C  T  R  D  K  R  M  S  *  G  C  A  R  F  E  R  K  K  V  R  C  L  L  F  Y  V  A  R  P  L  P  C  W  V  R  S  H  G  R  P  K  V  P  N  K  T  I  F  F  G  V  G  E  E  R  H  R  V  L  P  G  S  P  L  C  V  C  R  L  F  Y  F  F  M  F  F  P  C  S  C  V  Q  Q  S  R  T  D  P  V  V  T  C  F  L  W  T  S  Y  S  C  *  I  A  *  Y  G  D  G  Q  S  N  V  S  T  A  A  L  L  R  G  T  *  S  I  L  H  Y  Q  H  P  Y  I  N  Y  F  S  S  I  I  T  Y  T  V  M  V  I  S  L  I  N  S  C  R  I  I  Q  Q  A  A  Q  S  L  V  F  Y  M  *  S  H  T  A  D  Y  *  S  S  F  K  L  C  H  K  I  F  W  L  V  S  P  L  N  S  M  F  I  S  N  I  T  M  I  F  D  N  L  G  F  M  Y  I  F  F  K  N  E  C  I  S  K  T  K  I  L  T  P  F  K  *  V  L  T  T  K  R  P  I  V  R  P  I  I  L  *  R  I  N  F  K  L  R  *  L  K  P  R  A  S  N  Y  L  A  V  *  L  S  N  L  N  Y  Y  L  N  I  S  R  F  F  S  G  E  Q  D  S  H  L  K  Y  V  M  *  K  A  I  *  K  *  V  L  R  K  N  H  C  H  G  I  T  K  A  S  T  M  S  L  L  V  D  G  C  S  F  S  F  V  L  T  A  L  S  L  G  N  Y  F  V  V  D  E  L  I  P  F  K  L  I  L  *  *  E  *  L  W  R  A  T  L  F  L  L  N  R  D  V  N  V  S  I  Y  G  D  A  D  Y  G  S  P  F  V  *  P  S  G  K  C  I  L  G  R  F  G  I  L  T  V  E  L  I  P  C  T  G  *  I  L  Y  L  I  G  *  W  K  I  C  N  L  E  L  G  N  I  F  V  S  D  S  C  C  L  G  S  H  L  V  V  G  S  V  A  Q  L  M  H  G  C  F  T  W  C  V  L  V  L  F  V  L  L  L  L  L  K  L  K  I  *  R  C  V  C  C  C  W  K  L  N  H  F  G  H  T  V  G  L  F  L  L  H  L  E  T  L  N  F  *  L  L  N  L  L  L  L  L  V  *  I  C  R  V  H  H  *  H  S  M  V  A  W  S  F  F  S  *  Y  T  A  L  K  V  V  A  D  K  F  S  P  L  G  F  Y  *  A  Y  Y  D  A  T  H  E  :  F  R  L  F  L  L  E  W  M  *  G  M  F  S  *  Y  M  T  I  H  S  S  H  E  D  H  A  V  H  L  I  S  P  L  L  K  M  L  I  C  R  T  *  W  F  A  V  P  F  I  Q  Y  *  S  Y  Y  F  W  F  Y  C  E  F  Q  F  S  L  Y  F  F  I  Y  F  *  S  M  S  V  F  A  G  D  V  V  P  W  K  Y  L  L  R  L  A  W  G  V  S  F  G  V  K  G  F  T  S  F  *  Y  Y  N  I  L  S  S  Y  C  G  Y  D  Y  F  R  F  L  Y  L  F  G  D  C  N  M  K  V  V  L  T  H  E  F  D  Q  I  L  F  S  *  R  V  F  V  I  I  T  L  K  V  C  F  K  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90884" stop="91240"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVYCFMLPGLCHVGCARMAGQKYLIKLYFLVLERRGTGFCLDLLSVCVASFIFSCSFPAPASNNLAPIQWLLVFYGQVIRVELLNMAMDKATFLLLHSSEVHNQFYIISIHILITFPL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92097" stop="92417"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMLSGVPPCGGECCSVDAWMFYLVRSSFVCAVAAVEVEDLKMRLLLLEVKSFWSHCWVVPVTFGNTQLLTPKLVAVACLNLSCASLTQYGSLVILLLIYCTQSCSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90853" stop="91128"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCARFERKKVRCLLFYVARPLPCWVRSHGRPKVPNKTIFFGVGEERHRVLPGSPLCVCRLFYFFMFFPCSCVQQSRTDPVVTCFLWTSYSC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90364" stop="90533"/>
                    <exon start="90635" stop="90683"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRDGGSDVFVCSFGIDEHSRASDLFGLNRFVEIGEEVSATLMLSSRGFNRCAQEIYWFEDRCKDYRFCSLLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90149" e_stop="90533"/>
            <exon e_start="90635" e_stop="91183"/>
            <exon e_start="91661" e_stop="92466"/>
            <exon e_start="92580" e_stop="92760"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.545" acc_prob="0.985" e_score="0.976"/>
          <exon-intron don_prob="1.000" acc_prob="0.851" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="0.931"/>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="90149" e_stop="90533" e_length="385"/>
          </exon>
          <intron i_serial="1" don_prob="0.545" acc_prob="0.985">
            <gDNA_intron_boundary i_start="90534" i_stop="90634" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90635" e_stop="91183" e_length="549"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.851">
            <gDNA_intron_boundary i_start="91184" i_stop="91660" i_length="477"/>
          </intron>
          <exon e_serial="3" e_score="0.931">
            <gDNA_exon_boundary e_start="91661" e_stop="92466" e_length="806"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="0.906">
            <gDNA_exon_boundary e_start="92580" e_stop="92760" e_length="181"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90149" stop="90533"/>
              <exon start="90635" stop="91183"/>
              <exon start="91661" stop="92466"/>
              <exon start="92580" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90156" stop="90533"/>
              <exon start="90635" stop="90714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90157" stop="90387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333558" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGCCTATCTTCTTCTTTTCTCCAGATCTCTTCTAAGTAGTTTATCTTCTCCAAATTTTATGATCAGATCTGTGTAGATCGTTGCTTGATCTACGTTTTGGATATGGATTTGCCGCGTTTCTGTACCGGACCGCCGTGGTTTTGTACCGGACCGGCGACTGACGGGCCGTATGGATGGATGGTTCGATATTTGTTTGTTCTGGCCGACGGTTGACGAAGAGATGGTGGATCTGATGTGTTTGTGTGTTCGTTTGGGATAGATGAGCATAGTCGAGCATCAGATCTGTTCGGTCTTAATAGATTTGTGGAGATTGGAGAAGAAGTTTCAGCAACCTTGATGTTATCATCGCGAGGGTTCAACCGTTGTGCGCAAGAGATTTATTG : GTTTGAAGATAGATGCAAGGACTATCGGTTTTGTTCGTTGTTGTCATAGATCAAGCTCTTTTGACCGGTTATCATCGGCGAAGGTTGAATCATAGAACGTTATGGTGAATCCAAGGTTATGATGGTTTAATTTTGATGTTTATAATTATTTAAATGTTTTATTTGCTTAAGTTTTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG : GTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATGTTTCAATCTATGGAGATGCCGATTATGGCTCCCCTTTTGTGTAGCCTTCTGGGAAGTGTATTTTAGGCAGGTTTGGGATTTTGACTGTTGAATTAATTCCGTGTACTGGGTAGATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG : TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACT</gDNA_template>
            <first_frame> Y  A  Y  L  L  L  F  S  R  S  L  L  S  S  L  S  S  P  N  F  M  I  R  S  V  *  I  V  A  *  S  T  F  W  I  W  I  C  R  V  S  V  P  D  R  R  G  F  V  P  D  R  R  L  T  G  R  M  D  G  W  F  D  I  C  L  F  W  P  T  V  D  E  E  M  V  D  L  M  C  L  C  V  R  L  G  *  M  S  I  V  E  H  Q  I  C  S  V  L  I  D  L  W  R  L  E  K  K  F  Q  Q  P  *  C  Y  H  R  E  G  S  T  V  V  R  K  R  F  I   : G  L  K  I  D  A  R  T  I  G  F  V  R  C  C  H  R  S  S  S  F  D  R  L  S  S  A  K  V  E  S  *  N  V  M  V  N  P  R  L  *  W  F  N  F  D  V  Y  N  Y  L  N  V  L  F  A  *  V  F  I  D  A  C  T  C  T  R  D  K  R  M  S  *  G  C  A  R  F  E  R  K  K  V  R  C  L  L  F  Y  V  A  R  P  L  P  C  W  V  R  S  H  G  R  P  K  V  P  N  K  T  I  F  F  G  V  G  E  E  R  H  R  V  L  P  G  S  P  L  C  V  C  R  L  F  Y  F  F  M  F  F  P  C  S  C  V  Q  Q  S  R  T  D  P  V  V  T  C  F  L  W  T  S  Y  S  C  *  I  A  *  Y  G  D  G  Q  S  N  V  S  T  A  A  L  L  R   : G  E  Q  D  S  H  L  K  Y  V  M  *  K  A  I  *  K  *  V  L  R  K  N  H  C  H  G  I  T  K  A  S  T  M  S  L  L  V  D  G  C  S  F  S  F  V  L  T  A  L  S  L  G  N  Y  F  V  V  D  E  L  I  P  F  K  L  I  L  *  *  E  *  L  W  R  A  T  L  F  L  L  N  R  D  V  N  V  S  I  Y  G  D  A  D  Y  G  S  P  F  V  *  P  S  G  K  C  I  L  G  R  F  G  I  L  T  V  E  L  I  P  C  T  G  *  I  L  Y  L  I  G  *  W  K  I  C  N  L  E  L  G  N  I  F  V  S  D  S  C  C  L  G  S  H  L  V  V  G  S  V  A  Q  L  M  H  G  C  F  T  W  C  V  L  V  L  F  V  L  L  L  L  L  K  L  K  I  *  R  C  V  C  C  C  W  K  L  N  H  F  G  H  T  V  G  L  F  L  L  H  L  E  T  L  N  F  *  L  L  N  L  L  L  L  L  V  *  I  C  R  V  H  H  *  H  S  M  V  A  W  S  F  F  S  *  Y  T  A  L  K  V  V  A  D  K  F  S  P  L  G  F  Y  *  A  Y  Y  D  A  T  H  E  :  F  R  L  F  L  L  E  W  M  *  G  M  F  S  *  Y  M  T  I  H  S  S  H  E  D  H  A  V  H  L  I  S  P  L  L  K  M  L  I  C  R  T  *  W  F  A  V  P  F  I  Q  Y  *  S  Y  Y  F  W  F  Y  </first_frame>
            <second_frame>  T  P  I  F  F  F  S  P  D  L  F  *  V  V  Y  L  L  Q  I  L  *  S  D  L  C  R  S  L  L  D  L  R  F  G  Y  G  F  A  A  F  L  Y  R  T  A  V  V  L  Y  R  T  G  D  *  R  A  V  W  M  D  G  S  I  F  V  C  S  G  R  R  L  T  K  R  W  W  I  *  C  V  C  V  F  V  W  D  R  *  A  *  S  S  I  R  S  V  R  S  *  *  I  C  G  D  W  R  R  S  F  S  N  L  D  V  I  I  A  R  V  Q  P  L  C  A  R  D  L  L  :  V  *  R  *  M  Q  G  L  S  V  L  F  V  V  V  I  D  Q  A  L  L  T  G  Y  H  R  R  R  L  N  H  R  T  L  W  *  I  Q  G  Y  D  G  L  I  L  M  F  I  I  I  *  M  F  Y  L  L  K  F  L  S  M  H  A  H  V  R  E  I  K  E  *  V  E  V  V  R  G  L  R  G  K  K  *  G  V  Y  C  F  M  L  P  G  L  C  H  V  G  C  A  R  M  A  G  Q  K  Y  L  I  K  L  Y  F  L  V  L  E  R  R  G  T  G  F  C  L  D  L  L  S  V  C  V  A  S  F  I  F  S  C  S  F  P  A  P  A  S  N  N  L  A  P  I  Q  W  L  L  V  F  Y  G  Q  V  I  R  V  E  L  L  N  M  A  M  D  K  A  T  F  L  L  L  H  S  S  E  :  V  N  K  I  R  I  *  N  M  S  C  K  K  P  S  K  N  K  F  C  V  R  T  I  V  M  A  *  P  R  L  Q  L  C  L  F  L  L  M  A  V  L  F  H  L  F  S  R  L  F  H  L  E  I  T  S  L  W  M  S  *  F  L  L  S  *  F  Y  S  R  S  S  C  G  E  P  L  C  F  F  *  I  V  M  *  M  F  Q  S  M  E  M  P  I  M  A  P  L  L  C  S  L  L  G  S  V  F  *  A  G  L  G  F  *  L  L  N  *  F  R  V  L  G  R  S  C  I  *  L  D  D  G  K  F  A  T  *  N  L  G  I  S  L  F  L  I  H  A  V  W  G  P  T  L  W  W  G  V  L  L  S  *  C  M  D  V  L  P  G  A  F  *  F  C  L  C  C  C  C  C  *  S  *  R  S  E  D  A  F  A  A  V  G  S  *  I  I  L  V  T  L  L  G  C  S  C  Y  I  W  K  H  S  T  F  N  S  *  T  C  C  C  C  L  S  E  S  V  V  C  I  I  N  T  V  W  *  P  G  H  S  S  P  D  I  L  H  S  K  L  *  Q  I  N  F  L  P  W  G  F  I  K  H  I  M  M  L  L  M  S :   S  D  C  F  Y  *  S  G  C  K  A  C  F  H  D  I  *  Q  F  T  V  L  M  K  T  M  R  C  I  *  F  L  L  F  *  R  C  *  F  A  V  P  N  G  L  Q  F  H  L  F  N  I  E  V  I  I  F  G  F  T </second_frame>
            <third_frame>   R  L  S  S  S  F  L  Q  I  S  S  K  *  F  I  F  S  K  F  Y  D  Q  I  C  V  D  R  C  L  I  Y  V  L  D  M  D  L  P  R  F  C  T  G  P  P  W  F  C  T  G  P  A  T  D  G  P  Y  G  W  M  V  R  Y  L  F  V  L  A  D  G  *  R  R  D  G  G  S  D  V  F  V  C  S  F  G  I  D  E  H  S  R  A  S  D  L  F  G  L  N  R  F  V  E  I  G  E  E  V  S  A  T  L  M  L  S  S  R  G  F  N  R  C  A  Q  E  I  Y  W :   F  E  D  R  C  K  D  Y  R  F  C  S  L  L  S  *  I  K  L  F  *  P  V  I  I  G  E  G  *  I  I  E  R  Y  G  E  S  K  V  M  M  V  *  F  *  C  L  *  L  F  K  C  F  I  C  L  S  F  Y  R  C  M  H  M  Y  E  R  *  K  N  E  L  R  L  C  E  V  *  E  E  K  S  E  V  F  T  V  L  C  C  Q  A  F  A  M  L  G  A  L  A  W  Q  A  K  S  T  *  *  N  Y  I  F  W  C  W  R  G  E  A  Q  G  F  A  W  I  S  S  L  C  V  S  P  L  L  F  F  H  V  L  S  L  L  L  R  P  T  I  S  H  R  S  S  G  Y  L  F  F  M  D  K  L  F  V  L  N  C  L  I  W  R  W  T  K  Q  R  F  Y  C  C  T  P  Q  R :   *  T  R  F  A  S  K  I  C  H  V  K  S  H  L  K  I  S  S  A  *  E  P  L  S  W  H  N  Q  G  F  N  Y  V  S  S  C  *  W  L  F  F  F  I  C  S  H  G  S  F  T  W  K  L  L  R  C  G  *  V  N  S  F  *  V  N  S  I  V  G  V  V  V  E  S  H  F  V  S  F  K  S  *  C  K  C  F  N  L  W  R  C  R  L  W  L  P  F  C  V  A  F  W  E  V  Y  F  R  Q  V  W  D  F  D  C  *  I  N  S  V  Y  W  V  D  L  V  S  D  W  M  M  E  N  L  Q  L  R  T  W  E  Y  L  C  F  *  F  M  L  S  G  V  P  P  C  G  G  E  C  C  S  V  D  A  W  M  F  Y  L  V  R  S  S  F  V  C  A  V  A  A  V  E  V  E  D  L  K  M  R  L  L  L  L  E  V  K  S  F  W  S  H  C  W  V  V  P  V  T  F  G  N  T  Q  L  L  T  P  K  L  V  A  V  A  C  L  N  L  S  C  A  S  L  T  Q  Y  G  S  L  V  I  L  L  L  I  Y  C  T  Q  S  C  S  R  *  I  F  S  L  G  V  L  L  S  I  L  *  C  Y  S  *   : V  P  I  V  S  T  R  V  D  V  R  H  V  F  M  I  Y  D  N  S  Q  F  S  *  R  P  C  G  A  F  N  F  S  S  F  E  D  A  D  L  P  Y  L  M  V  C  S  S  I  Y  S  I  L  K  L  L  F  L  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90884" stop="91183"/>
                    <exon start="91661" stop="91681"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVYCFMLPGLCHVGCARMAGQKYLIKLYFLVLERRGTGFCLDLLSVCVASFIFSCSFPAPASNNLAPIQWLLVFYGQVIRVELLNMAMDKATFLLLHSSEVNKIRI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92097" stop="92417"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMLSGVPPCGGECCSVDAWMFYLVRSSFVCAVAAVEVEDLKMRLLLLEVKSFWSHCWVVPVTFGNTQLLTPKLVAVACLNLSCASLTQYGSLVILLLIYCTQSCSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90853" stop="91128"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCARFERKKVRCLLFYVARPLPCWVRSHGRPKVPNKTIFFGVGEERHRVLPGSPLCVCRLFYFFMFFPCSCVQQSRTDPVVTCFLWTSYSC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90364" stop="90533"/>
                    <exon start="90635" stop="90683"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRDGGSDVFVCSFGIDEHSRASDLFGLNRFVEIGEEVSATLMLSSRGFNRCAQEIYWFEDRCKDYRFCSLLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="91266" e_stop="91463"/>
            <exon e_start="91661" e_stop="91918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.851" e_score="0.985"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="91266" e_stop="91463" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.851">
            <gDNA_intron_boundary i_start="91464" i_stop="91660" i_length="197"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="91661" e_stop="91918" e_length="258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91266" stop="91463"/>
              <exon start="91661" stop="91918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333552" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTAATCAATAGTTGTAGAATCATTCAACAAGCCGCACAAAGCTTAGTCTTTTATATGTAGTCACATACAGCTGATTATTGAAGCAGCTTTAAACTATGTCATAAAATATTTTGGCTGGTCTCCCCTCTCAACTCTATGTTTATATCCAATATAACCATGATTTTTGATAACTTAGGGTTCATGTACATATTTTTCAA : GTGAACAAGATTCGCATCTAAAATATGTCATGTAAAAAGCCATCTAAAAATAAGTTCTGCGTAAGAACCATTGTCATGGCATAACCAAGGCTTCAACTATGTCTCTTCTTGTTGATGGCTGTTCTTTTTCATTTGTTCTCACGGCTCTTTCACTTGGAAATTACTTCGTTGTGGATGAGTTAATTCCTTTTAAGTTAATTCTATAGTAGGAGTAGTTGTGGAGAGCCACTTTGTTTCTTTTAAATCGTGATGTAAATG</gDNA_template>
            <first_frame> S  N  Q  *  L  *  N  H  S  T  S  R  T  K  L  S  L  L  Y  V  V  T  Y  S  *  L  L  K  Q  L  *  T  M  S  *  N  I  L  A  G  L  P  S  Q  L  Y  V  Y  I  Q  Y  N  H  D  F  *  *  L  R  V  H  V  H  I  F  Q  :  V  N  K  I  R  I  *  N  M  S  C  K  K  P  S  K  N  K  F  C  V  R  T  I  V  M  A  *  P  R  L  Q  L  C  L  F  L  L  M  A  V  L  F  H  L  F  S  R  L  F  H  L  E  I  T  S  L  W  M  S  *  F  L  L  S  *  F  Y  S  R  S  S  C  G  E  P  L  C  F  F  *  I  V  M  *  M </first_frame>
            <second_frame>  L  I  N  S  C  R  I  I  Q  Q  A  A  Q  S  L  V  F  Y  M  *  S  H  T  A  D  Y  *  S  S  F  K  L  C  H  K  I  F  W  L  V  S  P  L  N  S  M  F  I  S  N  I  T  M  I  F  D  N  L  G  F  M  Y  I  F  F  K :   *  T  R  F  A  S  K  I  C  H  V  K  S  H  L  K  I  S  S  A  *  E  P  L  S  W  H  N  Q  G  F  N  Y  V  S  S  C  *  W  L  F  F  F  I  C  S  H  G  S  F  T  W  K  L  L  R  C  G  *  V  N  S  F  *  V  N  S  I  V  G  V  V  V  E  S  H  F  V  S  F  K  S  *  C  K   </second_frame>
            <third_frame>   *  S  I  V  V  E  S  F  N  K  P  H  K  A  *  S  F  I  C  S  H  I  Q  L  I  I  E  A  A  L  N  Y  V  I  K  Y  F  G  W  S  P  L  S  T  L  C  L  Y  P  I  *  P  *  F  L  I  T  *  G  S  C  T  Y  F  S   : S  E  Q  D  S  H  L  K  Y  V  M  *  K  A  I  *  K  *  V  L  R  K  N  H  C  H  G  I  T  K  A  S  T  M  S  L  L  V  D  G  C  S  F  S  F  V  L  T  A  L  S  L  G  N  Y  F  V  V  D  E  L  I  P  F  K  L  I  L  *  *  E  *  L  W  R  A  T  L  F  L  L  N  R  D  V  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0075G11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="91061" e_stop="91183"/>
            <exon e_start="92143" e_stop="92466"/>
            <exon e_start="92580" e_stop="92718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="0.978"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91061" e_stop="91183" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91184" i_stop="92142" i_length="959"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="92143" e_stop="92466" e_length="324"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="92467" i_stop="92579" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="92580" e_stop="92718" e_length="139"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91061" stop="91183"/>
              <exon start="92143" stop="92466"/>
              <exon start="92580" stop="92718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312432" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG : TTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAG : TTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAG</gDNA_template>
            <first_frame> P  A  S  N  N  L  A  P  I  Q  W  L  L  V  F  Y  G  Q  V  I  R  V  E  L  L  N  M  A  M  D  K  A  T  F  L  L  L  H  S  S  E  :  L  M  H  G  C  F  T  W  C  V  L  V  L  F  V  L  L  L  L  L  K  L  K  I  *  R  C  V  C  C  C  W  K  L  N  H  F  G  H  T  V  G  L  F  L  L  H  L  E  T  L  N  F  *  L  L  N  L  L  L  L  L  V  *  I  C  R  V  H  H  *  H  S  M  V  A  W  S  F  F  S  *  Y  T  A  L  K  V  V  A  D  K  F  S  P  L  G  F  Y  *  A  Y  Y  D  A  T  H  E  :  F  R  L  F  L  L  E  W  M  *  G  M  F  S  *  Y  M  T  I  H  S  S  H  E  D  H  A  V  H  L  I  S  P  L  L  K  M  L  I  C  R  T  *  W  F  A  </first_frame>
            <second_frame>  L  R  P  T  I  S  H  R  S  S  G  Y  L  F  F  M  D  K  L  F  V  L  N  C  L  I  W  R  W  T  K  Q  R  F  Y  C  C  T  P  Q  S :   *  C  M  D  V  L  P  G  A  F  *  F  C  L  C  C  C  C  C  *  S  *  R  S  E  D  A  F  A  A  V  G  S  *  I  I  L  V  T  L  L  G  C  S  C  Y  I  W  K  H  S  T  F  N  S  *  T  C  C  C  C  L  S  E  S  V  V  C  I  I  N  T  V  W  *  P  G  H  S  S  P  D  I  L  H  S  K  L  *  Q  I  N  F  L  P  W  G  F  I  K  H  I  M  M  L  L  M  S :   S  D  C  F  Y  *  S  G  C  K  A  C  F  H  D  I  *  Q  F  T  V  L  M  K  T  M  R  C  I  *  F  L  L  F  *  R  C  *  F  A  V  P  N  G  L  Q </second_frame>
            <third_frame>   C  V  Q  Q  S  R  T  D  P  V  V  T  C  F  L  W  T  S  Y  S  C  *  I  A  *  Y  G  D  G  Q  S  N  V  S  T  A  A  L  L  R   : V  D  A  W  M  F  Y  L  V  R  S  S  F  V  C  A  V  A  A  V  E  V  E  D  L  K  M  R  L  L  L  L  E  V  K  S  F  W  S  H  C  W  V  V  P  V  T  F  G  N  T  Q  L  L  T  P  K  L  V  A  V  A  C  L  N  L  S  C  A  S  L  T  Q  Y  G  S  L  V  I  L  L  L  I  Y  C  T  Q  S  C  S  R  *  I  F  S  L  G  V  L  L  S  I  L  *  C  Y  S  *   : V  P  I  V  S  T  R  V  D  V  R  H  V  F  M  I  Y  D  N  S  Q  F  S  *  R  P  C  G  A  F  N  F  S  S  F  E  D  A  D  L  P  Y  L  M  V  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91138" stop="91183"/>
                    <exon start="92143" stop="92417"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YGDGQSNVSTAALLRVDAWMFYLVRSSFVCAVAAVEVEDLKMRLLLLEVKSFWSHCWVVPVTFGNTQLLTPKLVAVACLNLSCASLTQYGSLVILLLIYCTQSCSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="90808" e_stop="91183"/>
            <exon e_start="92032" e_stop="92760"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.183" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90808" e_stop="91183" e_length="376"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.183">
            <gDNA_intron_boundary i_start="91184" i_stop="92031" i_length="848"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="92032" e_stop="92760" e_length="729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90808" stop="91183"/>
              <exon start="92032" stop="92760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312429" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTATCGATGCATGCACATGTACGAGAGATAAAAGAATGAGTTGAGGTTGTGCGAGGTTTGAGAGGAAAAAAGTGAGGTGTTTACTGTTTTATGTTGCCAGGCCTTTGCCATGTTGGGTGCGCTCGCATGGCAGGCCAAAAGTACCTAATAAAACTATATTTTTTGGTGTTGGAGAGGAGAGGCACAGGGTTTTGCCTGGATCTCCTCTCTGTGTGTGTCGCCTCTTTTATTTTTTCATGTTCTTTCCCTGCTCCTGCGTCCAACAATCTCGCACCGATCCAGTGGTTACTTGTTTTTTATGGACAAGTTATTCGTGTTGAATTGCTTAATATGGCGATGGACAAAGCAACGTTTCTACTGCTGCACTCCTCAGAG : ATCTTGTATCTGATTGGATGATGGAAAATTTGCAACTTAGAACTTGGGAATATCTTTGTTTCTGATTCATGCTGTCTGGGGTCCCACCTTGTGGTGGGGAGTGTTGCTCAGTTGATGCATGGATGTTTTACCTGGTGCGTTCTAGTTTTGTTTGTGCTGTTGCTGCTGTTGAAGTTGAAGATCTGAAGATGCGTTTGCTGCTGTTGGAAGTTAAATCATTTTGGTCACACTGTTGGGTTGTTCCTGTTACATTTGGAAACACTCAACTTTTAACTCCTAAACTTGTTGCTGTTGCTTGTCTGAATCTGTCGTGTGCATCATTAACACAGTATGGTAGCCTGGTCATTCTTCTCCTGATATACTGCACTCAAAGTTGTAGCAGATAAATTTTCTCCCTTGGGGTTTTATTAAGCATATTATGATGCTACTCATGAGGTAAATCATCTGTCTTATAGAAGATATTCTTCTCTTTCTGTCTGTTAATATTTCGCTGAATTCGTGTATTTTTGTATTTTATTTACTCTATTGGTATTTTTCCCTGTCTGCAGTTCCGATTGTTTCTACTAGAGTGGATGTAAGGCATGTTTTCATGATATATGACAATTCACAGTTCTCATGAAGACCATGCGGTGCATTTAATTTCTCCTCTTTTGAAGATGCTGATTTGCCGTACCTAATGGTTTGCAGTTCCATTTATTCAATATTGAAGTTATTATTTTTGGTTTTACT</gDNA_template>
            <first_frame> F  I  D  A  C  T  C  T  R  D  K  R  M  S  *  G  C  A  R  F  E  R  K  K  V  R  C  L  L  F  Y  V  A  R  P  L  P  C  W  V  R  S  H  G  R  P  K  V  P  N  K  T  I  F  F  G  V  G  E  E  R  H  R  V  L  P  G  S  P  L  C  V  C  R  L  F  Y  F  F  M  F  F  P  C  S  C  V  Q  Q  S  R  T  D  P  V  V  T  C  F  L  W  T  S  Y  S  C  *  I  A  *  Y  G  D  G  Q  S  N  V  S  T  A  A  L  L  R   : D  L  V  S  D  W  M  M  E  N  L  Q  L  R  T  W  E  Y  L  C  F  *  F  M  L  S  G  V  P  P  C  G  G  E  C  C  S  V  D  A  W  M  F  Y  L  V  R  S  S  F  V  C  A  V  A  A  V  E  V  E  D  L  K  M  R  L  L  L  L  E  V  K  S  F  W  S  H  C  W  V  V  P  V  T  F  G  N  T  Q  L  L  T  P  K  L  V  A  V  A  C  L  N  L  S  C  A  S  L  T  Q  Y  G  S  L  V  I  L  L  L  I  Y  C  T  Q  S  C  S  R  *  I  F  S  L  G  V  L  L  S  I  L  *  C  Y  S  *  G  K  S  S  V  L  *  K  I  F  F  S  F  C  L  L  I  F  R  *  I  R  V  F  L  Y  F  I  Y  S  I  G  I  F  P  C  L  Q  F  R  L  F  L  L  E  W  M  *  G  M  F  S  *  Y  M  T  I  H  S  S  H  E  D  H  A  V  H  L  I  S  P  L  L  K  M  L  I  C  R  T  *  W  F  A  V  P  F  I  Q  Y  *  S  Y  Y  F  W  F  Y  </first_frame>
            <second_frame>  L  S  M  H  A  H  V  R  E  I  K  E  *  V  E  V  V  R  G  L  R  G  K  K  *  G  V  Y  C  F  M  L  P  G  L  C  H  V  G  C  A  R  M  A  G  Q  K  Y  L  I  K  L  Y  F  L  V  L  E  R  R  G  T  G  F  C  L  D  L  L  S  V  C  V  A  S  F  I  F  S  C  S  F  P  A  P  A  S  N  N  L  A  P  I  Q  W  L  L  V  F  Y  G  Q  V  I  R  V  E  L  L  N  M  A  M  D  K  A  T  F  L  L  L  H  S  S  E  :  I  L  Y  L  I  G  *  W  K  I  C  N  L  E  L  G  N  I  F  V  S  D  S  C  C  L  G  S  H  L  V  V  G  S  V  A  Q  L  M  H  G  C  F  T  W  C  V  L  V  L  F  V  L  L  L  L  L  K  L  K  I  *  R  C  V  C  C  C  W  K  L  N  H  F  G  H  T  V  G  L  F  L  L  H  L  E  T  L  N  F  *  L  L  N  L  L  L  L  L  V  *  I  C  R  V  H  H  *  H  S  M  V  A  W  S  F  F  S  *  Y  T  A  L  K  V  V  A  D  K  F  S  P  L  G  F  Y  *  A  Y  Y  D  A  T  H  E  V  N  H  L  S  Y  R  R  Y  S  S  L  S  V  C  *  Y  F  A  E  F  V  Y  F  C  I  L  F  T  L  L  V  F  F  P  V  C  S  S  D  C  F  Y  *  S  G  C  K  A  C  F  H  D  I  *  Q  F  T  V  L  M  K  T  M  R  C  I  *  F  L  L  F  *  R  C  *  F  A  V  P  N  G  L  Q  F  H  L  F  N  I  E  V  I  I  F  G  F  T </second_frame>
            <third_frame>   Y  R  C  M  H  M  Y  E  R  *  K  N  E  L  R  L  C  E  V  *  E  E  K  S  E  V  F  T  V  L  C  C  Q  A  F  A  M  L  G  A  L  A  W  Q  A  K  S  T  *  *  N  Y  I  F  W  C  W  R  G  E  A  Q  G  F  A  W  I  S  S  L  C  V  S  P  L  L  F  F  H  V  L  S  L  L  L  R  P  T  I  S  H  R  S  S  G  Y  L  F  F  M  D  K  L  F  V  L  N  C  L  I  W  R  W  T  K  Q  R  F  Y  C  C  T  P  Q  R :   S  C  I  *  L  D  D  G  K  F  A  T  *  N  L  G  I  S  L  F  L  I  H  A  V  W  G  P  T  L  W  W  G  V  L  L  S  *  C  M  D  V  L  P  G  A  F  *  F  C  L  C  C  C  C  C  *  S  *  R  S  E  D  A  F  A  A  V  G  S  *  I  I  L  V  T  L  L  G  C  S  C  Y  I  W  K  H  S  T  F  N  S  *  T  C  C  C  C  L  S  E  S  V  V  C  I  I  N  T  V  W  *  P  G  H  S  S  P  D  I  L  H  S  K  L  *  Q  I  N  F  L  P  W  G  F  I  K  H  I  M  M  L  L  M  R  *  I  I  C  L  I  E  D  I  L  L  F  L  S  V  N  I  S  L  N  S  C  I  F  V  F  Y  L  L  Y  W  Y  F  S  L  S  A  V  P  I  V  S  T  R  V  D  V  R  H  V  F  M  I  Y  D  N  S  Q  F  S  *  R  P  C  G  A  F  N  F  S  S  F  E  D  A  D  L  P  Y  L  M  V  C  S  S  I  Y  S  I  L  K  L  L  F  L  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92097" stop="92417"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMLSGVPPCGGECCSVDAWMFYLVRSSFVCAVAAVEVEDLKMRLLLLEVKSFWSHCWVVPVTFGNTQLLTPKLVAVACLNLSCASLTQYGSLVILLLIYCTQSCSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90884" stop="91183"/>
                    <exon start="92032" stop="92052"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVYCFMLPGLCHVGCARMAGQKYLIKLYFLVLERRGTGFCLDLLSVCVASFIFSCSFPAPASNNLAPIQWLLVFYGQVIRVELLNMAMDKATFLLLHSSEILYLIG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90853" stop="91128"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCARFERKKVRCLLFYVARPLPCWVRSHGRPKVPNKTIFFGVGEERHRVLPGSPLCVCRLFYFFMFFPCSCVQQSRTDPVVTCFLWTSYSC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90960" stop="91183"/>
                    <exon start="92032" stop="92044"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYIFWCWRGEAQGFAWISSLCVSPLLFFHVLSLLLRPTISHRSSGYLFFMDKLFVLNCLIWRWTKQRFYCCTPQRSCI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="103166" PGL_stop="108099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103166" e_stop="103329"/>
            <exon e_start="105426" e_stop="105525"/>
            <exon e_start="106039" e_stop="106215"/>
            <exon e_start="106834" e_stop="106932"/>
            <exon e_start="107035" e_stop="107280"/>
            <exon e_start="107612" e_stop="108099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.986" e_score="0.976"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="103166" e_stop="103329" e_length="164"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="103330" i_stop="105425" i_length="2096"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105426" e_stop="105525" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="105526" i_stop="106038" i_length="513"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106039" e_stop="106215" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.996">
            <gDNA_intron_boundary i_start="106216" i_stop="106833" i_length="618"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106834" e_stop="106932" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106933" i_stop="107034" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="107035" e_stop="107280" e_length="246"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.944">
            <gDNA_intron_boundary i_start="107281" i_stop="107611" i_length="331"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="107612" e_stop="108099" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103166" stop="103329"/>
              <exon start="105426" stop="105525"/>
              <exon start="106039" stop="106215"/>
              <exon start="106834" stop="106932"/>
              <exon start="107035" stop="107280"/>
              <exon start="107612" stop="108099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319222" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTCCTCAGATATAGAGAGAGAAAGAAGTGCGTGAGTGTATGAATTAATTTTTCTTCCATTTATTTTATTTTTTTGGCAGAATTTGCATGACATTCTGTTGAAAAGAGGACCTCAAGCTCACTTTTTTGTGCTTCTTCTTCTTCTTCTTCCGTTTCTCGTCAG : GTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAG : GTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGG : AATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAG : AACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCCAGAAGGTCAAGAACAGATGGCCTGGTTAATTGACTTCACTGGATGGTCTATAACCAATAATGTTCCTGTAAAATCTGCTCGCGAGACCATCAATATTTTGCAAAACCACTACCCTGAGAGACTCGCTGCAGCACTTCTGTACAATCCACCGCGACTTTTTGAAACATTTTGGAGG : ATTGTCAAATACTTTATGGATCCCAAAACATTTCAAAAGGTCAAGTTTGTGTATCCAAAGAATAAGGATAGCGCGGAACTGATGAAGTCGTACTTCGACGTTGACAATCTTCCTACTGAGTTTGGAGGAACAGCTACACTGAAATATGATCACGAGGAGTTCTCAAGGCAAATGGCTCAAGATGATGTGAAGGCCGCCAAGTTTTGGGGTTCGGACAAACATCCCCCTGGTCCTGGTGGTAATGGTAATTACTCTGCAGTAGAAGTTGCTCCAGAACCTTAATCACTTACTCTATAAGCCACTGCCTGAGCTTAAATGATTGCAACACTGACAAAGCTCAGTCTCTTATATGCCTAACTAAGTTCAAATAAATAATGAGGAATGTAAGAATCATGTTCACAGACATTAGCTTATTTCAGATGAACTTTAATTGTAGGTTGAACTTTGATTTATGCAGAAATCAAAAAGCACTAAATATTTAAGCCTCA</gDNA_template>
            <first_frame> C  S  S  D  I  E  R  E  R  S  A  *  V  Y  E  L  I  F  L  P  F  I  L  F  F  W  Q  N  L  H  D  I  L  L  K  R  G  P  Q  A  H  F  F  V  L  L  L  L  L  L  P  F  L  V  R :   *  S  S  S  K  R  Q  I  I  V  A  F  T  M  F  R  R  K  N  H  S  N  S  E  Q  G  G  E  D  Q  Q  H  K  :  V  K  E  L  R  A  S  L  G  Q  L  S  G  R  S  A  Q  F  C  T  D  A  C  L  K  R  F  L  E  A  R  N  W  N  V  D  K  A  K  K  M  L  E  E  T  L  K  W  R  L  S  F  K  P  E  E  I  R  W  :  N  E  V  A  K  E  G  E  T  G  K  V  F  K  A  N  F  H  D  R  H  G  R  T  V  L  I  L  R  P  G  M  Q  :  N  T  A  A  L  D  N  Q  M  K  H  L  V  Y  L  I  E  N  A  I  F  N  L  P  E  G  Q  E  Q  M  A  W  L  I  D  F  T  G  W  S  I  T  N  N  V  P  V  K  S  A  R  E  T  I  N  I  L  Q  N  H  Y  P  E  R  L  A  A  A  L  L  Y  N  P  P  R  L  F  E  T  F  W  R  :  I  V  K  Y  F  M  D  P  K  T  F  Q  K  V  K  F  V  Y  P  K  N  K  D  S  A  E  L  M  K  S  Y  F  D  V  D  N  L  P  T  E  F  G  G  T  A  T  L  K  Y  D  H  E  E  F  S  R  Q  M  A  Q  D  D  V  K  A  A  K  F  W  G  S  D  K  H  P  P  G  P  G  G  N  G  N  Y  S  A  V  E  V  A  P  E  P  *  S  L  T  L  *  A  T  A  *  A  *  M  I  A  T  L  T  K  L  S  L  L  Y  A  *  L  S  S  N  K  *  *  G  M  *  E  S  C  S  Q  T  L  A  Y  F  R  *  T  L  I  V  G  *  T  L  I  Y  A  E  I  K  K  H  *  I  F  K  P   </first_frame>
            <second_frame>  A  P  Q  I  *  R  E  K  E  V  R  E  C  M  N  *  F  F  F  H  L  F  Y  F  F  G  R  I  C  M  T  F  C  *  K  E  D  L  K  L  T  F  L  C  F  F  F  F  F  F  R  F  S  S   : G  K  A  Q  V  R  D  K  L  *  *  H  S  P  C  F  V  A  R  T  T  L  I  V  N  R  G  V  R  T  S  S  T  R :   L  R  S  L  G  L  P  W  G  N  S  Q  A  A  V  H  S  S  A  L  M  H  V  *  K  G  F  W  R  H  G  I  G  M  *  I  K  Q  R  R  C  W  R  R  R  L  N  G  D  Y  R  L  N  L  K  K  F  A  G :   M  K  *  R  K  K  V  R  L  G  R  C  L  K  Q  I  F  M  T  A  M  A  G  Q  S  *  Y  Y  G  Q  E  C  R :   T  R  Q  H  *  T  T  R  *  S  I  W  C  I  *  S  R  M  P  F  L  I  C  Q  K  V  K  N  R  W  P  G  *  L  T  S  L  D  G  L  *  P  I  M  F  L  *  N  L  L  A  R  P  S  I  F  C  K  T  T  T  L  R  D  S  L  Q  H  F  C  T  I  H  R  D  F  L  K  H  F  G  G :   L  S  N  T  L  W  I  P  K  H  F  K  R  S  S  L  C  I  Q  R  I  R  I  A  R  N  *  *  S  R  T  S  T  L  T  I  F  L  L  S  L  E  E  Q  L  H  *  N  M  I  T  R  S  S  Q  G  K  W  L  K  M  M  *  R  P  P  S  F  G  V  R  T  N  I  P  L  V  L  V  V  M  V  I  T  L  Q  *  K  L  L  Q  N  L  N  H  L  L  Y  K  P  L  P  E  L  K  *  L  Q  H  *  Q  S  S  V  S  Y  M  P  N  *  V  Q  I  N  N  E  E  C  K  N  H  V  H  R  H  *  L  I  S  D  E  L  *  L  *  V  E  L  *  F  M  Q  K  S  K  S  T  K  Y  L  S  L  </second_frame>
            <third_frame>   L  L  R  Y  R  E  R  K  K  C  V  S  V  *  I  N  F  S  S  I  Y  F  I  F  L  A  E  F  A  *  H  S  V  E  K  R  T  S  S  S  L  F  C  A  S  S  S  S  S  S  V  S  R  Q  :  V  K  L  K  *  E  T  N  Y  S  S  I  H  H  V  S  S  Q  E  P  L  *  *  *  T  G  G  *  G  P  A  A  Q   : G  *  G  A  *  G  F  P  G  A  T  L  R  P  Q  C  T  V  L  H  *  C  M  F  K  K  V  F  G  G  T  E  L  E  C  R  *  S  K  E  D  V  G  G  D  A  *  M  E  I  I  V  *  T  *  R  N  S  L   : E  *  S  S  E  R  R  *  D  W  E  G  V  *  S  K  F  S  *  P  P  W  Q  D  S  P  N  I  T  A  R  N  A   : E  H  G  S  T  R  Q  P  D  E  A  F  G  V  S  N  R  E  C  H  F  *  S  A  R  R  S  R  T  D  G  L  V  N  *  L  H  W  M  V  Y  N  Q  *  C  S  C  K  I  C  S  R  D  H  Q  Y  F  A  K  P  L  P  *  E  T  R  C  S  T  S  V  Q  S  T  A  T  F  *  N  I  L  E   : D  C  Q  I  L  Y  G  S  Q  N  I  S  K  G  Q  V  C  V  S  K  E  *  G  *  R  G  T  D  E  V  V  L  R  R  *  Q  S  S  Y  *  V  W  R  N  S  Y  T  E  I  *  S  R  G  V  L  K  A  N  G  S  R  *  C  E  G  R  Q  V  L  G  F  G  Q  T  S  P  W  S  W  W  *  W  *  L  L  C  S  R  S  C  S  R  T  L  I  T  Y  S  I  S  H  C  L  S  L  N  D  C  N  T  D  K  A  Q  S  L  I  C  L  T  K  F  K  *  I  M  R  N  V  R  I  M  F  T  D  I  S  L  F  Q  M  N  F  N  C  R  L  N  F  D  L  C  R  N  Q  K  A  L  N  I  *  A  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105430" stop="105525"/>
                    <exon start="106039" stop="106215"/>
                    <exon start="106834" stop="106932"/>
                    <exon start="107035" stop="107280"/>
                    <exon start="107612" stop="107893"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>897</number_coding_nucleotides>
                  <number_encoded_amino_acids>299</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSKRQIIVAFTMFRRKNHSNSEQGGEDQQHKVKELRASLGQLSGRSAQFCTDACLKRFLEARNWNVDKAKKMLEETLKWRLSFKPEEIRWNEVAKEGETGKVFKANFHDRHGRTVLILRPGMQNTAALDNQMKHLVYLIENAIFNLPEGQEQMAWLIDFTGWSITNNVPVKSARETINILQNHYPERLAAALLYNPPRLFETFWRIVKYFMDPKTFQKVKFVYPKNKDSAELMKSYFDVDNLPTEFGGTATLKYDHEEFSRQMAQDDVKAAKFWGSDKHPPGPGGNGNYSAVEVAPEP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="105148" e_stop="105525"/>
            <exon e_start="106039" e_stop="106215"/>
            <exon e_start="106834" e_stop="106932"/>
            <exon e_start="107035" e_stop="107105"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="0.976"/>
          <exon-intron don_prob="0.958" acc_prob="0.996" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="105148" e_stop="105525" e_length="378"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="105526" i_stop="106038" i_length="513"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="106039" e_stop="106215" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.996">
            <gDNA_intron_boundary i_start="106216" i_stop="106833" i_length="618"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106834" e_stop="106932" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106933" i_stop="107034" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="107035" e_stop="107105" e_length="71"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105148" stop="105525"/>
              <exon start="106039" stop="106215"/>
              <exon start="106834" stop="106932"/>
              <exon start="107035" stop="107105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319223" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAATTGTTTCGTAATTGGGAAAAGCCTATCTGGGATTAGGCAATATGTTTGCCTTTTTGCCTTGTAGTGATTCTTTTAGAAGCAATAAACTGCATGTAGAGATTTTTGTCACAAATCGTAAGTGTTTTATTCAAATAAAAGGCTGGTTACAACATTCTTGCTTACCAAAGCCAATTCCCCTTGTTTGTTATTGTCTCTGAGAAAAACACCTGCATTGCTACATGGGTAAATTAACTATTAACAATCTGTTGCTTGTTTTATTAATCATTTTTTCAGGTAAAGCTCAAGTAAGAGACAAATTATAGTAGCATTCACCATGTTTCGTCGCAAGAACCACTCTAATAGTGAACAGGGGGGTGAGGACCAGCAGCACAAG : GTTAAGGAGCTTAGGGCTTCCCTGGGGCAACTCTCAGGCCGCAGTGCACAGTTCTGCACTGATGCATGTTTAAAAAGGTTTTTGGAGGCACGGAATTGGAATGTAGATAAAGCAAAGAAGATGTTGGAGGAGACGCTTAAATGGAGATTATCGTTTAAACCTGAAGAAATTCGCTGG : AATGAAGTAGCGAAAGAAGGTGAGACTGGGAAGGTGTTTAAAGCAAATTTTCATGACCGCCATGGCAGGACAGTCCTAATATTACGGCCAGGAATGCAG : AACACGGCAGCACTAGACAACCAGATGAAGCATTTGGTGTATCTAATCGAGAATGCCATTTTTAATCTGCC</gDNA_template>
            <first_frame> V  N  C  F  V  I  G  K  S  L  S  G  I  R  Q  Y  V  C  L  F  A  L  *  *  F  F  *  K  Q  *  T  A  C  R  D  F  C  H  K  S  *  V  F  Y  S  N  K  R  L  V  T  T  F  L  L  T  K  A  N  S  P  C  L  L  L  S  L  R  K  T  P  A  L  L  H  G  *  I  N  Y  *  Q  S  V  A  C  F  I  N  H  F  F  R  *  S  S  S  K  R  Q  I  I  V  A  F  T  M  F  R  R  K  N  H  S  N  S  E  Q  G  G  E  D  Q  Q  H  K  :  V  K  E  L  R  A  S  L  G  Q  L  S  G  R  S  A  Q  F  C  T  D  A  C  L  K  R  F  L  E  A  R  N  W  N  V  D  K  A  K  K  M  L  E  E  T  L  K  W  R  L  S  F  K  P  E  E  I  R  W  :  N  E  V  A  K  E  G  E  T  G  K  V  F  K  A  N  F  H  D  R  H  G  R  T  V  L  I  L  R  P  G  M  Q  :  N  T  A  A  L  D  N  Q  M  K  H  L  V  Y  L  I  E  N  A  I  F  N  L   </first_frame>
            <second_frame>  *  I  V  S  *  L  G  K  A  Y  L  G  L  G  N  M  F  A  F  L  P  C  S  D  S  F  R  S  N  K  L  H  V  E  I  F  V  T  N  R  K  C  F  I  Q  I  K  G  W  L  Q  H  S  C  L  P  K  P  I  P  L  V  C  Y  C  L  *  E  K  H  L  H  C  Y  M  G  K  L  T  I  N  N  L  L  L  V  L  L  I  I  F  S  G  K  A  Q  V  R  D  K  L  *  *  H  S  P  C  F  V  A  R  T  T  L  I  V  N  R  G  V  R  T  S  S  T  R :   L  R  S  L  G  L  P  W  G  N  S  Q  A  A  V  H  S  S  A  L  M  H  V  *  K  G  F  W  R  H  G  I  G  M  *  I  K  Q  R  R  C  W  R  R  R  L  N  G  D  Y  R  L  N  L  K  K  F  A  G :   M  K  *  R  K  K  V  R  L  G  R  C  L  K  Q  I  F  M  T  A  M  A  G  Q  S  *  Y  Y  G  Q  E  C  R :   T  R  Q  H  *  T  T  R  *  S  I  W  C  I  *  S  R  M  P  F  L  I  C  </second_frame>
            <third_frame>   K  L  F  R  N  W  E  K  P  I  W  D  *  A  I  C  L  P  F  C  L  V  V  I  L  L  E  A  I  N  C  M  *  R  F  L  S  Q  I  V  S  V  L  F  K  *  K  A  G  Y  N  I  L  A  Y  Q  S  Q  F  P  L  F  V  I  V  S  E  K  N  T  C  I  A  T  W  V  N  *  L  L  T  I  C  C  L  F  Y  *  S  F  F  Q  V  K  L  K  *  E  T  N  Y  S  S  I  H  H  V  S  S  Q  E  P  L  *  *  *  T  G  G  *  G  P  A  A  Q   : G  *  G  A  *  G  F  P  G  A  T  L  R  P  Q  C  T  V  L  H  *  C  M  F  K  K  V  F  G  G  T  E  L  E  C  R  *  S  K  E  D  V  G  G  D  A  *  M  E  I  I  V  *  T  *  R  N  S  L   : E  *  S  S  E  R  R  *  D  W  E  G  V  *  S  K  F  S  *  P  P  W  Q  D  S  P  N  I  T  A  R  N  A   : E  H  G  S  T  R  Q  P  D  E  A  F  G  V  S  N  R  E  C  H  F  *  S  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105430" stop="105525"/>
                    <exon start="106039" stop="106215"/>
                    <exon start="106834" stop="106932"/>
                    <exon start="107035" stop="107103"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSKRQIIVAFTMFRRKNHSNSEQGGEDQQHKVKELRASLGQLSGRSAQFCTDACLKRFLEARNWNVDKAKKMLEETLKWRLSFKPEEIRWNEVAKEGETGKVFKANFHDRHGRTVLILRPGMQNTAALDNQMKHLVYLIENAIFNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="111471" PGL_stop="108343"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111471" e_stop="110994"/>
            <exon e_start="108737" e_stop="108343"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="0.981"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="111471" e_stop="110994" e_length="478"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="110993" i_stop="108738" i_length="2256"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="108737" e_stop="108343" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111471" stop="110994"/>
              <exon start="108737" stop="108343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339610" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTAATGGTATAAGATGTTCAGTGCACTCGGAAGGAGCCTCTTGCTTTCTTCGAAGGGACCGTGTTGATAAGAAAGCTGAAGAAGCTACATTTGTGAGCACAGATAGTATAAGATTGACTGGGAGTGTGAACTTTGAGGTTTCATATAAAGATGATCTTTTTCTCTCTGGGACTTTGGAGATGGCCAACATCAATGATTCTCAAAACTGTCTTAGGAGATGGAGCATGAACTGTGAATCAGTTATGAGTGCTGGCACGGGATTTCTGAAAGGAAAACATATTGTGGGTTCTGAATCATTGTCACCGACAATTGAAGTCTATGTTACCGGTTGCTTCTCTGGGACACCTATCATCTTAACTAAGACTTTGCAGCTAAATCACAGGAAGAAGCACCATAGAAAGGGTATGTTAGACTCCATTCCGGAGCATGACACTTCTGAACAGCATAAAGAAGTCTCATCTGAACATGATCTGCAG : GTAACAGAATACAACGGAAACTACAAACCAGAAAGCGAAGAAGACTACAACAACATGTACTGGGGACGAACAGAACTTATGGATGGTGAAGACGGAGAAATGTCCTGGTTCAATGCTGGGGTTCGAGTTGGTGTTGGGATTGGCCTTGGCATTTGTGTAGGAGTTGGAGTAGGAGTTGGTTTATTAGTCCGTACTACACGCAACTTAAGAAGGCGCCTTATGTAATTACATAGCATACGTATAAAGGCTAACAATACAGAGATACTGTTTTTAAGAATATATTGTAATTTTTCGACGTTGCTAACCATTTTCTTTTTCATGTGTAATCTGTTTGCTGCATTTTTGTGGTGAGTTGCTAAAGCTGTATGGACATGTTTTTAGGTAATATTGTATCA</gDNA_template>
            <first_frame> S  *  W  Y  K  M  F  S  A  L  G  R  S  L  L  L  S  S  K  G  P  C  *  *  E  S  *  R  S  Y  I  C  E  H  R  *  Y  K  I  D  W  E  C  E  L  *  G  F  I  *  R  *  S  F  S  L  W  D  F  G  D  G  Q  H  Q  *  F  S  K  L  S  *  E  M  E  H  E  L  *  I  S  Y  E  C  W  H  G  I  S  E  R  K  T  Y  C  G  F  *  I  I  V  T  D  N  *  S  L  C  Y  R  L  L  L  W  D  T  Y  H  L  N  *  D  F  A  A  K  S  Q  E  E  A  P  *  K  G  Y  V  R  L  H  S  G  A  *  H  F  *  T  A  *  R  S  L  I  *  T  *  S  A   : G  N  R  I  Q  R  K  L  Q  T  R  K  R  R  R  L  Q  Q  H  V  L  G  T  N  R  T  Y  G  W  *  R  R  R  N  V  L  V  Q  C  W  G  S  S  W  C  W  D  W  P  W  H  L  C  R  S  W  S  R  S  W  F  I  S  P  Y  Y  T  Q  L  K  K  A  P  Y  V  I  T  *  H  T  Y  K  G  *  Q  Y  R  D  T  V  F  K  N  I  L  *  F  F  D  V  A  N  H  F  L  F  H  V  *  S  V  C  C  I  F  V  V  S  C  *  S  C  M  D  M  F  L  G  N  I  V  S </first_frame>
            <second_frame>  V  N  G  I  R  C  S  V  H  S  E  G  A  S  C  F  L  R  R  D  R  V  D  K  K  A  E  E  A  T  F  V  S  T  D  S  I  R  L  T  G  S  V  N  F  E  V  S  Y  K  D  D  L  F  L  S  G  T  L  E  M  A  N  I  N  D  S  Q  N  C  L  R  R  W  S  M  N  C  E  S  V  M  S  A  G  T  G  F  L  K  G  K  H  I  V  G  S  E  S  L  S  P  T  I  E  V  Y  V  T  G  C  F  S  G  T  P  I  I  L  T  K  T  L  Q  L  N  H  R  K  K  H  H  R  K  G  M  L  D  S  I  P  E  H  D  T  S  E  Q  H  K  E  V  S  S  E  H  D  L  Q  :  V  T  E  Y  N  G  N  Y  K  P  E  S  E  E  D  Y  N  N  M  Y  W  G  R  T  E  L  M  D  G  E  D  G  E  M  S  W  F  N  A  G  V  R  V  G  V  G  I  G  L  G  I  C  V  G  V  G  V  G  V  G  L  L  V  R  T  T  R  N  L  R  R  R  L  M  *  L  H  S  I  R  I  K  A  N  N  T  E  I  L  F  L  R  I  Y  C  N  F  S  T  L  L  T  I  F  F  F  M  C  N  L  F  A  A  F  L  W  *  V  A  K  A  V  W  T  C  F  *  V  I  L  Y   </second_frame>
            <third_frame>   L  M  V  *  D  V  Q  C  T  R  K  E  P  L  A  F  F  E  G  T  V  L  I  R  K  L  K  K  L  H  L  *  A  Q  I  V  *  D  *  L  G  V  *  T  L  R  F  H  I  K  M  I  F  F  S  L  G  L  W  R  W  P  T  S  M  I  L  K  T  V  L  G  D  G  A  *  T  V  N  Q  L  *  V  L  A  R  D  F  *  K  E  N  I  L  W  V  L  N  H  C  H  R  Q  L  K  S  M  L  P  V  A  S  L  G  H  L  S  S  *  L  R  L  C  S  *  I  T  G  R  S  T  I  E  R  V  C  *  T  P  F  R  S  M  T  L  L  N  S  I  K  K  S  H  L  N  M  I  C  R :   *  Q  N  T  T  E  T  T  N  Q  K  A  K  K  T  T  T  T  C  T  G  D  E  Q  N  L  W  M  V  K  T  E  K  C  P  G  S  M  L  G  F  E  L  V  L  G  L  A  L  A  F  V  *  E  L  E  *  E  L  V  Y  *  S  V  L  H  A  T  *  E  G  A  L  C  N  Y  I  A  Y  V  *  R  L  T  I  Q  R  Y  C  F  *  E  Y  I  V  I  F  R  R  C  *  P  F  S  F  S  C  V  I  C  L  L  H  F  C  G  E  L  L  K  L  Y  G  H  V  F  R  *  Y  C  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111470" stop="110994"/>
                    <exon start="108737" stop="108513"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNGIRCSVHSEGASCFLRRDRVDKKAEEATFVSTDSIRLTGSVNFEVSYKDDLFLSGTLEMANINDSQNCLRRWSMNCESVMSAGTGFLKGKHIVGSESLSPTIEVYVTGCFSGTPIILTKTLQLNHRKKHHRKGMLDSIPEHDTSEQHKEVSSEHDLQVTEYNGNYKPESEEDYNNMYWGRTELMDGEDGEMSWFNAGVRVGVGIGLGICVGVGVGVGLLVRTTRNLRRRLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="109305" e_stop="108588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="109305" e_stop="108588" e_length="718"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109305" stop="108588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339611" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGTGCTATCCATCTTTCATGATTAACTTTAGAAATGCTATGATATATGAATTCTGCTTCTGATGATAACACTTAGCTCCTTGCTCTGATGTTGTGTGATTGAATAGTGCCATCCAGTTTTGTTCTTACATTTTTTTGCACTCCATATGGCAACCTTAGTGACATTTGTTTCTTTTGGGATATCGAATCCATTACGTGACGAACATTAGCTTGTTATACGTCAACGTTGTTCCAAACTCAAGTTGACTTTTCTTGAAAGTAAATCCAAAGTTTGAAAGTTTCAGCTCATGTGTAAGTATTGCCTATGTGCTGCTTTAATTTTTGAAGTTGACAAAAATTAGTTGCATTTCATCTACAGTTTCTGATTGTTAAGTTTTCTGTGTCGTTTCGATTGAAAAATATTATCATGGCAGTGGTTGGTTTTAGTAATTCTTTAGTACTTGTTTATTTTGAACCACAAAGTAGAGTTCCACAGGTGCAATTAATTAGATGAATCCCACAGCTTCTCAGATGTGTAATTACATGATGGAAACTGCACAGGTTCTGAAGTTCATTGTGTTTCACAGGTAACAGAATACAACGGAAACTACAAACCAGAAAGCGAAGAAGACTACAACAACATGTACTGGGGACGAACAGAACTTATGGATGGTGAAGACGGAGAAATGTCCTGGTTCAATGCTGGGGTTCGAGTTGGTGTTGGGATTGGCCTTGGC</gDNA_template>
            <first_frame> S  R  A  I  H  L  S  *  L  T  L  E  M  L  *  Y  M  N  S  A  S  D  D  N  T  *  L  L  A  L  M  L  C  D  *  I  V  P  S  S  F  V  L  T  F  F  C  T  P  Y  G  N  L  S  D  I  C  F  F  W  D  I  E  S  I  T  *  R  T  L  A  C  Y  T  S  T  L  F  Q  T  Q  V  D  F  S  *  K  *  I  Q  S  L  K  V  S  A  H  V  *  V  L  P  M  C  C  F  N  F  *  S  *  Q  K  L  V  A  F  H  L  Q  F  L  I  V  K  F  S  V  S  F  R  L  K  N  I  I  M  A  V  V  G  F  S  N  S  L  V  L  V  Y  F  E  P  Q  S  R  V  P  Q  V  Q  L  I  R  *  I  P  Q  L  L  R  C  V  I  T  *  W  K  L  H  R  F  *  S  S  L  C  F  T  G  N  R  I  Q  R  K  L  Q  T  R  K  R  R  R  L  Q  Q  H  V  L  G  T  N  R  T  Y  G  W  *  R  R  R  N  V  L  V  Q  C  W  G  S  S  W  C  W  D  W  P  W  </first_frame>
            <second_frame>  H  V  L  S  I  F  H  D  *  L  *  K  C  Y  D  I  *  I  L  L  L  M  I  T  L  S  S  L  L  *  C  C  V  I  E  *  C  H  P  V  L  F  L  H  F  F  A  L  H  M  A  T  L  V  T  F  V  S  F  G  I  S  N  P  L  R  D  E  H  *  L  V  I  R  Q  R  C  S  K  L  K  L  T  F  L  E  S  K  S  K  V  *  K  F  Q  L  M  C  K  Y  C  L  C  A  A  L  I  F  E  V  D  K  N  *  L  H  F  I  Y  S  F  *  L  L  S  F  L  C  R  F  D  *  K  I  L  S  W  Q  W  L  V  L  V  I  L  *  Y  L  F  I  L  N  H  K  V  E  F  H  R  C  N  *  L  D  E  S  H  S  F  S  D  V  *  L  H  D  G  N  C  T  G  S  E  V  H  C  V  S  Q  V  T  E  Y  N  G  N  Y  K  P  E  S  E  E  D  Y  N  N  M  Y  W  G  R  T  E  L  M  D  G  E  D  G  E  M  S  W  F  N  A  G  V  R  V  G  V  G  I  G  L  G </second_frame>
            <third_frame>   T  C  Y  P  S  F  M  I  N  F  R  N  A  M  I  Y  E  F  C  F  *  *  *  H  L  A  P  C  S  D  V  V  *  L  N  S  A  I  Q  F  C  S  Y  I  F  L  H  S  I  W  Q  P  *  *  H  L  F  L  L  G  Y  R  I  H  Y  V  T  N  I  S  L  L  Y  V  N  V  V  P  N  S  S  *  L  F  L  K  V  N  P  K  F  E  S  F  S  S  C  V  S  I  A  Y  V  L  L  *  F  L  K  L  T  K  I  S  C  I  S  S  T  V  S  D  C  *  V  F  C  V  V  S  I  E  K  Y  Y  H  G  S  G  W  F  *  *  F  F  S  T  C  L  F  *  T  T  K  *  S  S  T  G  A  I  N  *  M  N  P  T  A  S  Q  M  C  N  Y  M  M  E  T  A  Q  V  L  K  F  I  V  F  H  R  *  Q  N  T  T  E  T  T  N  Q  K  A  K  K  T  T  T  T  C  T  G  D  E  Q  N  L  W  M  V  K  T  E  K  C  P  G  S  M  L  G  F  E  L  V  L  G  L  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108785" stop="108588"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHDGNCTGSEVHCVSQVTEYNGNYKPESEEDYNNMYWGRTELMDGEDGEMSWFNAGVRVGVGIGLG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="117687" PGL_stop="119952"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117687" e_stop="117794"/>
            <exon e_start="119290" e_stop="119951"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.897" e_score="0.991"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="117687" e_stop="117794" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.897">
            <gDNA_intron_boundary i_start="117795" i_stop="119289" i_length="1495"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="119290" e_stop="119951" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117687" stop="117794"/>
              <exon start="119290" stop="119951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTTTTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAAAAATATTATTAGCTCTACCATCTCATAAAA : TGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCTGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATCGATCGATGATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTCTTAGTGCTATAGCTAGTTTTTAATTTTTTTTTAATTTTGTTGTTTAGTATGTCTATTTTAATTGTGAGGAATATTTTAGTTAGGGAGCAATTGTTATTAGCTTTACACTCTGGATTGAATTGTGATATGTCACATTAATG</gDNA_template>
            <first_frame> W  F  C  M  *  R  *  K  V  L  L  S  T  K  R  A  K  H  M  S  Y  F  L  *  K  K  K  Y  Y  *  L  Y  H  L  I  K  :  W  I  V  T  K  I  D  G  K  E  E  S  C  E  E  N  K  R  V  I  S  S  N  S  R  I  I  S  N  E  W  R  F  T  T  T  T  T  N  Y  S  *  K  K  R  K  T  K  K  D  Y  *  Y  C  K  R  R  *  R  R  S  F  C  *  I  K  E  T  Q  N  K  *  S  *  R  I  T  R  *  K  Q  K  R  R  *  I  *  R  G  *  K  F  T  T  T  K  A  T  T  Y  K  E  Q  S  *  K  K  K  Q  T  K  K  E  L  L  I  *  F  F  L  I  N  S  I  P  T  Y  P  L  T  M  *  L  *  I  D  R  *  *  M  C  *  T  T  *  A  T  K  I  H  V  S  R  I  P  F  F  F  *  V  I  F  E  T  K  *  F  H  L  S  *  F  N  F  L  V  L  *  L  V  F  N  F  F  L  I  L  L  F  S  M  S  I  L  I  V  R  N  I  L  V  R  E  Q  L  L  L  A  L  H  S  G  L  N  C  D  M  S  H  *   </first_frame>
            <second_frame>  G  F  V  C  K  D  E  R  F  C  L  A  P  K  E  L  N  T  *  V  I  S  Y  E  K  K  N  I  I  S  S  T  I  S  *  N :   G  L  S  Q  R  L  M  G  K  K  K  V  V  K  K  T  K  E  L  S  V  A  I  A  E  S  S  A  M  S  G  D  S  Q  Q  Q  Q  Q  I  T  P  R  K  R  G  R  P  R  K  I  I  S  I  V  K  E  D  E  E  E  V  S  A  E  L  K  K  L  K  T  N  E  V  E  E  S  Q  G  E  N  K  K  E  D  E  F  E  E  D  K  N  L  Q  P  Q  K  Q  Q  P  T  R  S  R  A  R  R  K  S  K  P  R  K  S  C  *  F  N  F  F  *  S  T  V  F  P  L  I  L  *  R  C  D  S  E  S  I  D  D  R  C  A  K  L  L  E  L  L  K  F  M  C  Q  E  S  P  F  S  F  R  *  F  L  K  Q  S  N  F  I  F  P  S  L  I  S  *  C  Y  S  *  F  L  I  F  F  *  F  C  C  L  V  C  L  F  *  L  *  G  I  F  *  L  G  S  N  C  Y  *  L  Y  T  L  D  *  I  V  I  C  H  I  N  </second_frame>
            <third_frame>   V  L  Y  V  K  M  K  G  F  A  *  H  Q  K  S  *  T  H  E  L  F  L  M  K  K  K  I  L  L  A  L  P  S  H  K   : M  D  C  H  K  D  *  W  E  R  R  K  L  *  R  K  Q  K  S  Y  Q  *  Q  *  Q  N  H  Q  Q  *  V  E  I  H  N  N  N  N  K  L  L  L  E  K  E  E  D  Q  E  R  L  L  V  L  *  K  K  M  K  K  K  F  L  L  N  *  R  N  S  K  Q  M  K  L  K  N  H  K  V  K  T  K  K  K  M  N  L  K  R  I  K  I  Y  N  H  K  S  N  N  L  Q  G  A  E  L  E  E  K  A  N  Q  E  R  V  A  N  L  I  F  S  D  Q  Q  Y  S  H  L  S  S  N  D  V  T  L  N  R  S  M  I  D  V  L  N  Y  L  S  Y  *  N  S  C  V  K  N  P  L  F  L  L  G  N  F  *  N  K  V  I  S  S  F  L  V  *  F  L  S  A  I  A  S  F  *  F  F  F  N  F  V  V  *  Y  V  Y  F  N  C  E  E  Y  F  S  *  G  A  I  V  I  S  F  T  L  W  I  E  L  *  Y  V  T  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117793" stop="117794"/>
                    <exon start="119290" stop="119635"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGLSQRLMGKKKVVKKTKELSVAIAESSAMSGDSQQQQQITPRKRGRPRKIISIVKEDEEEVSAELKKLKTNEVEESQGENKKEDEFEEDKNLQPQKQQPTRSRARRKSKPRKSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="119021" e_stop="119566"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="119021" e_stop="119566" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119021" stop="119566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337219" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACACTAGAAATCTTAAAGATAGGATTTTTATGTTGTGGTTTGTTTTCAAAATTGGATTTTAATTATCATATGTAGCTAAAAGAAAGCTCTAGAGGCCTTAAACTTTGGGGATTTTTATTTTTGGGTAATTTTCAAGATTGAATTTTGTTATCATATATACTAAGAGAGAGCAATAGAAACCTTAAAAATTGAATTTTTGTTTCTTGGAGTTTTTCAAGATTCTATTTTTATCATATTATAAGCTTTTGAAATGACTAAATTAGTTTAGTGGATTGTCACAAAGATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTA</gDNA_template>
            <first_frame> N  T  R  N  L  K  D  R  I  F  M  L  W  F  V  F  K  I  G  F  *  L  S  Y  V  A  K  R  K  L  *  R  P  *  T  L  G  I  F  I  F  G  *  F  S  R  L  N  F  V  I  I  Y  T  K  R  E  Q  *  K  P  *  K  L  N  F  C  F  L  E  F  F  K  I  L  F  L  S  Y  Y  K  L  L  K  *  L  N  *  F  S  G  L  S  Q  R  L  M  G  K  K  K  V  V  K  K  T  K  E  L  S  V  A  I  A  E  S  S  A  M  S  G  D  S  Q  Q  Q  Q  Q  I  T  P  R  K  R  G  R  P  R  K  I  I  S  I  V  K  E  D  E  E  E  V  S  A  E  L  K  K  L  K  T  N  E  V  E  E  S  Q  G  E  N  K  K  E  D  E  F  E  E  D  K  N  L </first_frame>
            <second_frame>  T  L  E  I  L  K  I  G  F  L  C  C  G  L  F  S  K  L  D  F  N  Y  H  M  *  L  K  E  S  S  R  G  L  K  L  W  G  F  L  F  L  G  N  F  Q  D  *  I  L  L  S  Y  I  L  R  E  S  N  R  N  L  K  N  *  I  F  V  S  W  S  F  S  R  F  Y  F  Y  H  I  I  S  F  *  N  D  *  I  S  L  V  D  C  H  K  D  *  W  E  R  R  K  L  *  R  K  Q  K  S  Y  Q  *  Q  *  Q  N  H  Q  Q  *  V  E  I  H  N  N  N  N  K  L  L  L  E  K  E  E  D  Q  E  R  L  L  V  L  *  K  K  M  K  K  K  F  L  L  N  *  R  N  S  K  Q  M  K  L  K  N  H  K  V  K  T  K  K  K  M  N  L  K  R  I  K  I   </second_frame>
            <third_frame>   H  *  K  S  *  R  *  D  F  Y  V  V  V  C  F  Q  N  W  I  L  I  I  I  C  S  *  K  K  A  L  E  A  L  N  F  G  D  F  Y  F  W  V  I  F  K  I  E  F  C  Y  H  I  Y  *  E  R  A  I  E  T  L  K  I  E  F  L  F  L  G  V  F  Q  D  S  I  F  I  I  L  *  A  F  E  M  T  K  L  V  *  W  I  V  T  K  I  D  G  K  E  E  S  C  E  E  N  K  R  V  I  S  S  N  S  R  I  I  S  N  E  W  R  F  T  T  T  T  T  N  Y  S  *  K  K  R  K  T  K  K  D  Y  *  Y  C  K  R  R  *  R  R  S  F  C  *  I  K  E  T  Q  N  K  *  S  *  R  I  T  R  *  K  Q  K  R  R  *  I  *  R  G  *  K  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119285" stop="119566"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSGLSQRLMGKKKVVKKTKELSVAIAESSAMSGDSQQQQQITPRKRGRPRKIISIVKEDEEEVSAELKKLKTNEVEESQGENKKEDEFEEDKNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="118228" e_stop="118952"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="118228" e_stop="118952" e_length="725"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118228" stop="118952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332258" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATAGAAAATACTAGAAACCTTAGAAATTGAATTTTTATTTAGTGGGTAGTTTTAAGATTGGATTTTAAGGTTATATAGGCAAAGGAGAGGAAAATTCAATCTTTAAGGTCTCTAGTCCTTTAAAAGATTGGTTTGTTATTTTGTGGGTAGTTTTCAAGATTGGATTTTAAAGGTAATATATGCAAAAGAGAAATACTTGAAACCTTAAAAGATTGAATTTTTATTTGTGGGTATTTTCAAGATTGGATTTTTAAGGTAATATATACATAAGGGAACACTAAAAAACCTTAAAGATTGAATTTTTTATTTTGTGGGTAATTTCAAGATTGAATTTTTTAGGTTATATATGCAAAAGAGAGCTATAGAAACCTTAAAGATTGGATTTTAGTTTTCAAGATTGGATTTAAAGGTTATATGTGCAAAAGAGAATACTACAAACCTTAAATATTGAATTTTTATTTTGTGGGTAGTTCCAAGATTGGATTTTTAAGGCTATATATGCAAATGAGAGCATTGGAAACATTAAAGATTGAATTTTCATTTTGTGGGTAGTTTCAAGATTGGATTTTAAAGGTAATATATACAAAAGAGAACACTAAAAACCTTAAAGATTGAATTTTTATTTTGTGGGTATTTTCAAGATTGGATTTTTAAGTCTATATATGCAAATGAGACCACTAGAGACATTAAAGATTGAATTTTTATTTTGTGGGTATTTTCA</gDNA_template>
            <first_frame> Q  N  R  K  Y  *  K  P  *  K  L  N  F  Y  L  V  G  S  F  K  I  G  F  *  G  Y  I  G  K  G  E  E  N  S  I  F  K  V  S  S  P  L  K  D  W  F  V  I  L  W  V  V  F  K  I  G  F  *  R  *  Y  M  Q  K  R  N  T  *  N  L  K  R  L  N  F  Y  L  W  V  F  S  R  L  D  F  *  G  N  I  Y  I  R  E  H  *  K  T  L  K  I  E  F  F  I  L  W  V  I  S  R  L  N  F  L  G  Y  I  C  K  R  E  L  *  K  P  *  R  L  D  F  S  F  Q  D  W  I  *  R  L  Y  V  Q  K  R  I  L  Q  T  L  N  I  E  F  L  F  C  G  *  F  Q  D  W  I  F  K  A  I  Y  A  N  E  S  I  G  N  I  K  D  *  I  F  I  L  W  V  V  S  R  L  D  F  K  G  N  I  Y  K  R  E  H  *  K  P  *  R  L  N  F  Y  F  V  G  I  F  K  I  G  F  L  S  L  Y  M  Q  M  R  P  L  E  T  L  K  I  E  F  L  F  C  G  Y  F   </first_frame>
            <second_frame>  K  I  E  N  T  R  N  L  R  N  *  I  F  I  *  W  V  V  L  R  L  D  F  K  V  I  *  A  K  E  R  K  I  Q  S  L  R  S  L  V  L  *  K  I  G  L  L  F  C  G  *  F  S  R  L  D  F  K  G  N  I  C  K  R  E  I  L  E  T  L  K  D  *  I  F  I  C  G  Y  F  Q  D  W  I  F  K  V  I  Y  T  *  G  N  T  K  K  P  *  R  L  N  F  L  F  C  G  *  F  Q  D  *  I  F  *  V  I  Y  A  K  E  S  Y  R  N  L  K  D  W  I  L  V  F  K  I  G  F  K  G  Y  M  C  K  R  E  Y  Y  K  P  *  I  L  N  F  Y  F  V  G  S  S  K  I  G  F  L  R  L  Y  M  Q  M  R  A  L  E  T  L  K  I  E  F  S  F  C  G  *  F  Q  D  W  I  L  K  V  I  Y  T  K  E  N  T  K  N  L  K  D  *  I  F  I  L  W  V  F  S  R  L  D  F  *  V  Y  I  C  K  *  D  H  *  R  H  *  R  L  N  F  Y  F  V  G  I  F  </second_frame>
            <third_frame>   K  *  K  I  L  E  T  L  E  I  E  F  L  F  S  G  *  F  *  D  W  I  L  R  L  Y  R  Q  R  R  G  K  F  N  L  *  G  L  *  S  F  K  R  L  V  C  Y  F  V  G  S  F  Q  D  W  I  L  K  V  I  Y  A  K  E  K  Y  L  K  P  *  K  I  E  F  L  F  V  G  I  F  K  I  G  F  L  R  *  Y  I  H  K  G  T  L  K  N  L  K  D  *  I  F  Y  F  V  G  N  F  K  I  E  F  F  R  L  Y  M  Q  K  R  A  I  E  T  L  K  I  G  F  *  F  S  R  L  D  L  K  V  I  C  A  K  E  N  T  T  N  L  K  Y  *  I  F  I  L  W  V  V  P  R  L  D  F  *  G  Y  I  C  K  *  E  H  W  K  H  *  R  L  N  F  H  F  V  G  S  F  K  I  G  F  *  R  *  Y  I  Q  K  R  T  L  K  T  L  K  I  E  F  L  F  C  G  Y  F  Q  D  W  I  F  K  S  I  Y  A  N  E  T  T  R  D  I  K  D  *  I  F  I  L  W  V  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0075G11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="117692" e_stop="117794"/>
            <exon e_start="119305" e_stop="119952"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.662" e_score="0.981"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="117692" e_stop="117794" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.662">
            <gDNA_intron_boundary i_start="117795" i_stop="119304" i_length="1510"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="119305" e_stop="119952" e_length="648"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117692" stop="117794"/>
              <exon start="119305" stop="119952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320791" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTATGTAAAGATGAAAGGTTTTGCTTAGCACCAAAAGAGCTAAACACATGAGTTATTTCTTATGAAAAAAAAAATATTATTAGCTCTACCATCTCATAAAA : ATTGATGGGAAAGAAGAAAGTTGTGAAGAAAACAAAAGAGTTATCAGTAGCAATAGCAGAATCATCAGCAATGAGTGGAGATTCACAACAACAACAACAAATTACTCCTAGAAAAAGAGGAAGACCAAGAAAGATTATTAGTATTGTAAAAGAAGATGAAGAAGAAGTTTCTGCTGAATTAAAGAAACTCAAAACAAATGAAGTTGAAGAATCACAAGGTGAAAACAAAAAAGAAGATGAATTTGAAGAGGATAAAAATTTACAACCACAAAAGCAACAACCTACAAGGAGCAGAGCTAGAAGAAAAAGCAAACCAAGAAAGAGTTGCTAATTTAATTTTTTCTGATCAACAGTATTCCCACTTATCCTCTAACGATGTGACTCTGAATCGATCGATGATAGATGTGCTAAACTACTTGAGCTACTAAAATTCATGTGTCAAGAATCCCCTTTTTCTTTTAGGTAATTTTTGAAACAAAGTAATTTCATCTTTCCTAGTTTAATTTCTTAGTGCTATAGCTAGTTTTTAATTTTTTTTTAATTTTGTTGTTTAGTATGTCTATTTTAATTGTGAGGAATATTTTAGTTAGGGAGCAATTGTTATTAGCTTTACACTCTGGATTGAATTGTGATATGTCACATTAATGA</gDNA_template>
            <first_frame> L  Y  V  K  M  K  G  F  A  *  H  Q  K  S  *  T  H  E  L  F  L  M  K  K  K  I  L  L  A  L  P  S  H  K   : N  *  W  E  R  R  K  L  *  R  K  Q  K  S  Y  Q  *  Q  *  Q  N  H  Q  Q  *  V  E  I  H  N  N  N  N  K  L  L  L  E  K  E  E  D  Q  E  R  L  L  V  L  *  K  K  M  K  K  K  F  L  L  N  *  R  N  S  K  Q  M  K  L  K  N  H  K  V  K  T  K  K  K  M  N  L  K  R  I  K  I  Y  N  H  K  S  N  N  L  Q  G  A  E  L  E  E  K  A  N  Q  E  R  V  A  N  L  I  F  S  D  Q  Q  Y  S  H  L  S  S  N  D  V  T  L  N  R  S  M  I  D  V  L  N  Y  L  S  Y  *  N  S  C  V  K  N  P  L  F  L  L  G  N  F  *  N  K  V  I  S  S  F  L  V  *  F  L  S  A  I  A  S  F  *  F  F  F  N  F  V  V  *  Y  V  Y  F  N  C  E  E  Y  F  S  *  G  A  I  V  I  S  F  T  L  W  I  E  L  *  Y  V  T  L  M  </first_frame>
            <second_frame>  C  M  *  R  *  K  V  L  L  S  T  K  R  A  K  H  M  S  Y  F  L  *  K  K  K  Y  Y  *  L  Y  H  L  I  K  :  I  D  G  K  E  E  S  C  E  E  N  K  R  V  I  S  S  N  S  R  I  I  S  N  E  W  R  F  T  T  T  T  T  N  Y  S  *  K  K  R  K  T  K  K  D  Y  *  Y  C  K  R  R  *  R  R  S  F  C  *  I  K  E  T  Q  N  K  *  S  *  R  I  T  R  *  K  Q  K  R  R  *  I  *  R  G  *  K  F  T  T  T  K  A  T  T  Y  K  E  Q  S  *  K  K  K  Q  T  K  K  E  L  L  I  *  F  F  L  I  N  S  I  P  T  Y  P  L  T  M  *  L  *  I  D  R  *  *  M  C  *  T  T  *  A  T  K  I  H  V  S  R  I  P  F  F  F  *  V  I  F  E  T  K  *  F  H  L  S  *  F  N  F  L  V  L  *  L  V  F  N  F  F  L  I  L  L  F  S  M  S  I  L  I  V  R  N  I  L  V  R  E  Q  L  L  L  A  L  H  S  G  L  N  C  D  M  S  H  *  * </second_frame>
            <third_frame>   V  C  K  D  E  R  F  C  L  A  P  K  E  L  N  T  *  V  I  S  Y  E  K  K  N  I  I  S  S  T  I  S  *  K :   L  M  G  K  K  K  V  V  K  K  T  K  E  L  S  V  A  I  A  E  S  S  A  M  S  G  D  S  Q  Q  Q  Q  Q  I  T  P  R  K  R  G  R  P  R  K  I  I  S  I  V  K  E  D  E  E  E  V  S  A  E  L  K  K  L  K  T  N  E  V  E  E  S  Q  G  E  N  K  K  E  D  E  F  E  E  D  K  N  L  Q  P  Q  K  Q  Q  P  T  R  S  R  A  R  R  K  S  K  P  R  K  S  C  *  F  N  F  F  *  S  T  V  F  P  L  I  L  *  R  C  D  S  E  S  I  D  D  R  C  A  K  L  L  E  L  L  K  F  M  C  Q  E  S  P  F  S  F  R  *  F  L  K  Q  S  N  F  I  F  P  S  L  I  S  *  C  Y  S  *  F  L  I  F  F  *  F  C  C  L  V  C  L  F  *  L  *  G  I  F  *  L  G  S  N  C  Y  *  L  Y  T  L  D  *  I  V  I  C  H  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117793" stop="117794"/>
                    <exon start="119305" stop="119635"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLMGKKKVVKKTKELSVAIAESSAMSGDSQQQQQITPRKRGRPRKIISIVKEDEEEVSAELKKLKTNEVEESQGENKKEDEFEEDKNLQPQKQQPTRSRARRKSKPRKSC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119487" stop="119732"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNSKQMKLKNHKVKTKKKMNLKRIKIYNHKSNNLQGAELEEKANQERVANLIFSDQQYSHLSSNDVTLNRSMIDVLNYLSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="134560" PGL_stop="130809"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134560" e_stop="134458"/>
            <exon e_start="134370" e_stop="134255"/>
            <exon e_start="133092" e_stop="132917"/>
            <exon e_start="132477" e_stop="132287"/>
            <exon e_start="132194" e_stop="132108"/>
            <exon e_start="131767" e_stop="131610"/>
            <exon e_start="131501" e_stop="131291"/>
            <exon e_start="131187" e_stop="130809"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.995" e_score="0.990"/>
          <exon-intron don_prob="0.985" acc_prob="0.818" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.876" acc_prob="0.752" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.508" e_score="0.991"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="134560" e_stop="134458" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.995">
            <gDNA_intron_boundary i_start="134457" i_stop="134371" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134370" e_stop="134255" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.818">
            <gDNA_intron_boundary i_start="134254" i_stop="133093" i_length="1162"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="133092" e_stop="132917" e_length="176"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.000">
            <gDNA_intron_boundary i_start="132916" i_stop="132478" i_length="439"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="132477" e_stop="132287" e_length="191"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="132286" i_stop="132195" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="132194" e_stop="132108" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.876" acc_prob="0.752">
            <gDNA_intron_boundary i_start="132107" i_stop="131768" i_length="340"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="131767" e_stop="131610" e_length="158"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="131609" i_stop="131502" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="131501" e_stop="131291" e_length="211"/>
          </exon>
          <intron i_serial="7" don_prob="0.828" acc_prob="0.508">
            <gDNA_intron_boundary i_start="131290" i_stop="131188" i_length="103"/>
          </intron>
          <exon e_serial="8" e_score="0.984">
            <gDNA_exon_boundary e_start="131187" e_stop="130809" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134560" stop="134458"/>
              <exon start="134370" stop="134255"/>
              <exon start="133092" stop="132917"/>
              <exon start="132477" stop="132287"/>
              <exon start="132194" stop="132108"/>
              <exon start="131767" stop="131610"/>
              <exon start="131501" stop="131291"/>
              <exon start="131187" stop="130809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131738" stop="131610"/>
              <exon start="131501" stop="131291"/>
              <exon start="131187" stop="131102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAGTTAACGATAAGTTCGTTAATGGGAAGTCGAATGGTGGAACTGTGAATGGAGAGAAGGCAATGGTAACTCCAGTTATTAGAGCGAGTTTGGAGAAACAG : GGATATAAAATAATTGGCACGCATAGCGGTGTGAAACTTTGTAGATGGACAAAATCACAACTTAGAGGGCGCGGAGGTTGCTATAAGCACTCATTTTATGGCATTGAGAGTCACAG : GTGCATGGAGGCCACTCCTAGTTTAGCATGTGCAAACAAATGTGTTTTTTGTTGGAGACATCACACAAATCCTGTTGGGAAGAGCTGGACATGGAAGATGGATGATCCTATTGAGATTGTGAACACAGCTATAGATTTGCATACCAAAATGATAAAACAGATGAAAGGCGTTCCAG : GTGTTAAAGCTGAGCGTTTGTCTGAGGGTCTTTCTCCTAGGCATTGTGCTTTGTCACTGGTTGGTGAGCCTATTATGTATCCAGAAATAAATTCACTTGTAGATGAGCTGCACAGGAGGCGGATTTCGACTTTTCTTGTTACTAATGCACAGTTCCCTGACAAGATTAAGTTATTGAAACCAATCACACAG : TTGTATGTCAGCGTAGATGCAGGTACAAAGGACAGCTTAAAAGCAATTGACAGACCACTATTTGGAGACTTCTGGGAGCGATTTCTT : GATTCTTTGAGAGCTCTTAAGGAGAAGGAGCAAAGAACTGTCTATCGTTTGACACTCGTTAAAGGGTGGAACACAGAAGATGTGGATGCATATTCTAGCCTATTCAGCATTGGGAAACCCGATTTCATTGAAATCAAAGGTGTCACTTATTGTGGAAC : GTCGGCTACATCAAAGTTGACAATGGAGAATGTCCCTTGGCATTCTGATGTGAAGGAATTCTCTGAAGCCTTGGCTAAAAAGAGCAACGGAGAGTATGAGGTTGCCTGTGAGCATGTGCATTCCTGCTGTGTTCTTCTGGCTAAAGTCGCTAAGTTCAAAATAGACGGTCAATGGTTCACGTGGATAGACTACGAGAAGTTCCATGATCTG : GTAGCTTCTGGGAAACCCTTTACAAGTAAAGATTACATGACACCTACACCATCTTGGGCTGTCTATGGAGCTGAGGAAGGTGGTTTTGACCCAGAGCAATTGCGTTTCAAAAAAGAGCGGCACCACAGATCATCTCGTCAGGAAAATGGTTCTTGAAATGTTCGAAGCAGGTTTTCGTTACCTCTGGGATGGCCTAAAATTTTGTTCCTTCGACTTAGATTTTGCTTTCCTCCATTTTCCTATACAAGTTGCATTTCACTATATAACTGCCGAAGTTGTCACTGATATGAAAAATATTGCTTGTATGAACACTTTGTATGTTGTTTCATACACAAATTTTAATTAATTTTGATTATATAAAACGATTGGAAGATACTTG</gDNA_template>
            <first_frame> R  S  *  R  *  V  R  *  W  E  V  E  W  W  N  C  E  W  R  E  G  N  G  N  S  S  Y  *  S  E  F  G  E  T   : G  I  *  N  N  W  H  A  *  R  C  E  T  L  *  M  D  K  I  T  T  *  R  A  R  R  L  L  *  A  L  I  L  W  H  *  E  S  Q  :  V  H  G  G  H  S  *  F  S  M  C  K  Q  M  C  F  L  L  E  T  S  H  K  S  C  W  E  E  L  D  M  E  D  G  *  S  Y  *  D  C  E  H  S  Y  R  F  A  Y  Q  N  D  K  T  D  E  R  R  S  R :   C  *  S  *  A  F  V  *  G  S  F  S  *  A  L  C  F  V  T  G  W  *  A  Y  Y  V  S  R  N  K  F  T  C  R  *  A  A  Q  E  A  D  F  D  F  S  C  Y  *  C  T  V  P  *  Q  D  *  V  I  E  T  N  H  T   : V  V  C  Q  R  R  C  R  Y  K  G  Q  L  K  S  N  *  Q  T  T  I  W  R  L  L  G  A  I  S   : *  F  F  E  S  S  *  G  E  G  A  K  N  C  L  S  F  D  T  R  *  R  V  E  H  R  R  C  G  C  I  F  *  P  I  Q  H  W  E  T  R  F  H  *  N  Q  R  C  H  L  L  W  N  :  V  G  Y  I  K  V  D  N  G  E  C  P  L  A  F  *  C  E  G  I  L  *  S  L  G  *  K  E  Q  R  R  V  *  G  C  L  *  A  C  A  F  L  L  C  S  S  G  *  S  R  *  V  Q  N  R  R  S  M  V  H  V  D  R  L  R  E  V  P  *  S   : G  S  F  W  E  T  L  Y  K  *  R  L  H  D  T  Y  T  I  L  G  C  L  W  S  *  G  R  W  F  *  P  R  A  I  A  F  Q  K  R  A  A  P  Q  I  I  S  S  G  K  W  F  L  K  C  S  K  Q  V  F  V  T  S  G  M  A  *  N  F  V  P  S  T  *  I  L  L  S  S  I  F  L  Y  K  L  H  F  T  I  *  L  P  K  L  S  L  I  *  K  I  L  L  V  *  T  L  C  M  L  F  H  T  Q  I  L  I  N  F  D  Y  I  K  R  L  E  D  T   </first_frame>
            <second_frame>  G  V  N  D  K  F  V  N  G  K  S  N  G  G  T  V  N  G  E  K  A  M  V  T  P  V  I  R  A  S  L  E  K  Q  :  G  Y  K  I  I  G  T  H  S  G  V  K  L  C  R  W  T  K  S  Q  L  R  G  R  G  G  C  Y  K  H  S  F  Y  G  I  E  S  H  R :   C  M  E  A  T  P  S  L  A  C  A  N  K  C  V  F  C  W  R  H  H  T  N  P  V  G  K  S  W  T  W  K  M  D  D  P  I  E  I  V  N  T  A  I  D  L  H  T  K  M  I  K  Q  M  K  G  V  P   : G  V  K  A  E  R  L  S  E  G  L  S  P  R  H  C  A  L  S  L  V  G  E  P  I  M  Y  P  E  I  N  S  L  V  D  E  L  H  R  R  R  I  S  T  F  L  V  T  N  A  Q  F  P  D  K  I  K  L  L  K  P  I  T  Q  :  L  Y  V  S  V  D  A  G  T  K  D  S  L  K  A  I  D  R  P  L  F  G  D  F  W  E  R  F  L  :  D  S  L  R  A  L  K  E  K  E  Q  R  T  V  Y  R  L  T  L  V  K  G  W  N  T  E  D  V  D  A  Y  S  S  L  F  S  I  G  K  P  D  F  I  E  I  K  G  V  T  Y  C  G  T :   S  A  T  S  K  L  T  M  E  N  V  P  W  H  S  D  V  K  E  F  S  E  A  L  A  K  K  S  N  G  E  Y  E  V  A  C  E  H  V  H  S  C  C  V  L  L  A  K  V  A  K  F  K  I  D  G  Q  W  F  T  W  I  D  Y  E  K  F  H  D  L  :  V  A  S  G  K  P  F  T  S  K  D  Y  M  T  P  T  P  S  W  A  V  Y  G  A  E  E  G  G  F  D  P  E  Q  L  R  F  K  K  E  R  H  H  R  S  S  R  Q  E  N  G  S  *  N  V  R  S  R  F  S  L  P  L  G  W  P  K  I  L  F  L  R  L  R  F  C  F  P  P  F  S  Y  T  S  C  I  S  L  Y  N  C  R  S  C  H  *  Y  E  K  Y  C  L  Y  E  H  F  V  C  C  F  I  H  K  F  *  L  I  L  I  I  *  N  D  W  K  I  L  </second_frame>
            <third_frame>   E  L  T  I  S  S  L  M  G  S  R  M  V  E  L  *  M  E  R  R  Q  W  *  L  Q  L  L  E  R  V  W  R  N  R :   D  I  K  *  L  A  R  I  A  V  *  N  F  V  D  G  Q  N  H  N  L  E  G  A  E  V  A  I  S  T  H  F  M  A  L  R  V  T   : G  A  W  R  P  L  L  V  *  H  V  Q  T  N  V  F  F  V  G  D  I  T  Q  I  L  L  G  R  A  G  H  G  R  W  M  I  L  L  R  L  *  T  Q  L  *  I  C  I  P  K  *  *  N  R  *  K  A  F  Q  :  V  L  K  L  S  V  C  L  R  V  F  L  L  G  I  V  L  C  H  W  L  V  S  L  L  C  I  Q  K  *  I  H  L  *  M  S  C  T  G  G  G  F  R  L  F  L  L  L  M  H  S  S  L  T  R  L  S  Y  *  N  Q  S  H  S :   C  M  S  A  *  M  Q  V  Q  R  T  A  *  K  Q  L  T  D  H  Y  L  E  T  S  G  S  D  F  L :   I  L  *  E  L  L  R  R  R  S  K  E  L  S  I  V  *  H  S  L  K  G  G  T  Q  K  M  W  M  H  I  L  A  Y  S  A  L  G  N  P  I  S  L  K  S  K  V  S  L  I  V  E   : R  R  L  H  Q  S  *  Q  W  R  M  S  L  G  I  L  M  *  R  N  S  L  K  P  W  L  K  R  A  T  E  S  M  R  L  P  V  S  M  C  I  P  A  V  F  F  W  L  K  S  L  S  S  K  *  T  V  N  G  S  R  G  *  T  T  R  S  S  M  I  W :   *  L  L  G  N  P  L  Q  V  K  I  T  *  H  L  H  H  L  G  L  S  M  E  L  R  K  V  V  L  T  Q  S  N  C  V  S  K  K  S  G  T  T  D  H  L  V  R  K  M  V  L  E  M  F  E  A  G  F  R  Y  L  W  D  G  L  K  F  C  S  F  D  L  D  F  A  F  L  H  F  P  I  Q  V  A  F  H  Y  I  T  A  E  V  V  T  D  M  K  N  I  A  C  M  N  T  L  Y  V  V  S  Y  T  N  F  N  *  F  *  L  Y  K  T  I  G  R  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134559" stop="134458"/>
                    <exon start="134370" stop="134255"/>
                    <exon start="133092" stop="132917"/>
                    <exon start="132477" stop="132287"/>
                    <exon start="132194" stop="132108"/>
                    <exon start="131767" stop="131610"/>
                    <exon start="131501" stop="131291"/>
                    <exon start="131187" stop="131032"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1194</number_coding_nucleotides>
                  <number_encoded_amino_acids>398</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVNDKFVNGKSNGGTVNGEKAMVTPVIRASLEKQGYKIIGTHSGVKLCRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWTWKMDDPIEIVNTAIDLHTKMIKQMKGVPGVKAERLSEGLSPRHCALSLVGEPIMYPEINSLVDELHRRRISTFLVTNAQFPDKIKLLKPITQLYVSVDAGTKDSLKAIDRPLFGDFWERFLDSLRALKEKEQRTVYRLTLVKGWNTEDVDAYSSLFSIGKPDFIEIKGVTYCGTSATSKLTMENVPWHSDVKEFSEALAKKSNGEYEVACEHVHSCCVLLAKVAKFKIDGQWFTWIDYEKFHDLVASGKPFTSKDYMTPTPSWAVYGAEEGGFDPEQLRFKKERHHRSSRQENGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="136783" PGL_stop="140379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136783" e_stop="136901"/>
            <exon e_start="137360" e_stop="137632"/>
            <exon e_start="138034" e_stop="138139"/>
            <exon e_start="138850" e_stop="138988"/>
            <exon e_start="139357" e_stop="139500"/>
            <exon e_start="140173" e_stop="140213"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="0.950"/>
          <exon-intron don_prob="0.997" acc_prob="0.883" e_score="0.978"/>
          <exon-intron don_prob="0.999" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.624" acc_prob="0.961" e_score="0.986"/>
          <exon-intron don_prob="0.986" acc_prob="0.000" e_score="0.993"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="136783" e_stop="136901" e_length="119"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="136902" i_stop="137359" i_length="458"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="137360" e_stop="137632" e_length="273"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.883">
            <gDNA_intron_boundary i_start="137633" i_stop="138033" i_length="401"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="138034" e_stop="138139" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.970">
            <gDNA_intron_boundary i_start="138140" i_stop="138849" i_length="710"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="138850" e_stop="138988" e_length="139"/>
          </exon>
          <intron i_serial="4" don_prob="0.624" acc_prob="0.961">
            <gDNA_intron_boundary i_start="138989" i_stop="139356" i_length="368"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="139357" e_stop="139500" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.000">
            <gDNA_intron_boundary i_start="139501" i_stop="140172" i_length="672"/>
          </intron>
          <exon e_serial="6" e_score="0.976">
            <gDNA_exon_boundary e_start="140173" e_stop="140213" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136783" stop="136901"/>
              <exon start="137360" stop="137632"/>
              <exon start="138034" stop="138139"/>
              <exon start="138850" stop="138988"/>
              <exon start="139357" stop="139500"/>
              <exon start="140173" stop="140213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAGCTTTGGCACTAAACCCATCAGCATTCTTCCCCGAAAAAAGTTCCTTCAAAAACCCTACCTGTAAAACCCATCTAACCCAGAAGGTAATTGCAAGCTCTCAACAAGGAGAACTCG : GTTTTTCTCTAATTCAATGGAGCTAGAGGATAGCATTTTAAACTTCTCTGATGAAGACGAGAGCTTTGAGGATGATGAAGATGTTAAAATGAATGATATTGAGGAAGGAGAACTAGTTGAGAAGATCTCCAAGACTGGATTAGAGGAAACTGGTGATGTATGTGCCAGCTCTGAAAATCCTCTTCCAGGTAAAAAAAATCGGAGACGGAGGAAGAACAAGGGAAAGAACAAAAGCAAGAGAGTTTCTTCAGGTCCAATCACAGACATTAACAG : ATTTGTTTTGGATGTCGGAAGACGCTTGAAAGAGAGGAAATCTTATCTTATATGGAATGCTGTTGGTTGTCTCGGCCTATCTGCTTTGAGTGATCTTGTTAAAGAG : ATGCCTCCTGGTGAAGCCTTTTTCACTCCTTTCAGTCTCATGGACCTTTCTTCCAAGATAGCTTCTGCCGGAACTACTTTGTGGTGTCTATTTGGATTGATTCCAATGTTTTTGCCTGTCTTTGTTGTTTTACCCCATG : GTGGATGCAATTCAGACTTGTGGCGGCCAGAAGACTGCTGATGGCAGGCGTTTCCGAACAGGTGGTGGAATATTGTGGAGCATCCTTAAAGTACGAGATCCAAATGCATACAAAGAGATAATGAAGAAAGGGAAGGAGTTTGAG : AAGCAGTTTAGGCAGGCTAATCTCAAGCAAGAACCCCTCCA</gDNA_template>
            <first_frame> *  S  F  G  T  K  P  I  S  I  L  P  R  K  K  F  L  Q  K  P  Y  L  *  N  P  S  N  P  E  G  N  C  K  L  S  T  R  R  T  R :   F  F  S  N  S  M  E  L  E  D  S  I  L  N  F  S  D  E  D  E  S  F  E  D  D  E  D  V  K  M  N  D  I  E  E  G  E  L  V  E  K  I  S  K  T  G  L  E  E  T  G  D  V  C  A  S  S  E  N  P  L  P  G  K  K  N  R  R  R  R  K  N  K  G  K  N  K  S  K  R  V  S  S  G  P  I  T  D  I  N  R :   F  V  L  D  V  G  R  R  L  K  E  R  K  S  Y  L  I  W  N  A  V  G  C  L  G  L  S  A  L  S  D  L  V  K  E  :  M  P  P  G  E  A  F  F  T  P  F  S  L  M  D  L  S  S  K  I  A  S  A  G  T  T  L  W  C  L  F  G  L  I  P  M  F  L  P  V  F  V  V  L  P  H   : G  G  C  N  S  D  L  W  R  P  E  D  C  *  W  Q  A  F  P  N  R  W  W  N  I  V  E  H  P  *  S  T  R  S  K  C  I  Q  R  D  N  E  E  R  E  G  V  *   : E  A  V  *  A  G  *  S  Q  A  R  T  P  P </first_frame>
            <second_frame>  E  A  L  A  L  N  P  S  A  F  F  P  E  K  S  S  F  K  N  P  T  C  K  T  H  L  T  Q  K  V  I  A  S  S  Q  Q  G  E  L   : G  F  S  L  I  Q  W  S  *  R  I  A  F  *  T  S  L  M  K  T  R  A  L  R  M  M  K  M  L  K  *  M  I  L  R  K  E  N  *  L  R  R  S  P  R  L  D  *  R  K  L  V  M  Y  V  P  A  L  K  I  L  F  Q  V  K  K  I  G  D  G  G  R  T  R  E  R  T  K  A  R  E  F  L  Q  V  Q  S  Q  T  L  T   : D  L  F  W  M  S  E  D  A  *  K  R  G  N  L  I  L  Y  G  M  L  L  V  V  S  A  Y  L  L  *  V  I  L  L  K  R :   C  L  L  V  K  P  F  S  L  L  S  V  S  W  T  F  L  P  R  *  L  L  P  E  L  L  C  G  V  Y  L  D  *  F  Q  C  F  C  L  S  L  L  F  Y  P  M  :  V  D  A  I  Q  T  C  G  G  Q  K  T  A  D  G  R  R  F  R  T  G  G  G  I  L  W  S  I  L  K  V  R  D  P  N  A  Y  K  E  I  M  K  K  G  K  E  F  E  :  K  Q  F  R  Q  A  N  L  K  Q  E  P  L   </second_frame>
            <third_frame>   K  L  W  H  *  T  H  Q  H  S  S  P  K  K  V  P  S  K  T  L  P  V  K  P  I  *  P  R  R  *  L  Q  A  L  N  K  E  N  S  :  V  F  L  *  F  N  G  A  R  G  *  H  F  K  L  L  *  *  R  R  E  L  *  G  *  *  R  C  *  N  E  *  Y  *  G  R  R  T  S  *  E  D  L  Q  D  W  I  R  G  N  W  *  C  M  C  Q  L  *  K  S  S  S  R  *  K  K  S  E  T  E  E  E  Q  G  K  E  Q  K  Q  E  S  F  F  R  S  N  H  R  H  *  Q  :  I  C  F  G  C  R  K  T  L  E  R  E  E  I  L  S  Y  M  E  C  C  W  L  S  R  P  I  C  F  E  *  S  C  *  R   : D  A  S  W  *  S  L  F  H  S  F  Q  S  H  G  P  F  F  Q  D  S  F  C  R  N  Y  F  V  V  S  I  W  I  D  S  N  V  F  A  C  L  C  C  F  T  P  W :   W  M  Q  F  R  L  V  A  A  R  R  L  L  M  A  G  V  S  E  Q  V  V  E  Y  C  G  A  S  L  K  Y  E  I  Q  M  H  T  K  R  *  *  R  K  G  R  S  L  R :   S  S  L  G  R  L  I  S  S  K  N  P  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136852" stop="136901"/>
                    <exon start="137360" stop="137632"/>
                    <exon start="138034" stop="138139"/>
                    <exon start="138850" stop="138988"/>
                    <exon start="139357" stop="139397"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPSNPEGNCKLSTRRTRFFSNSMELEDSILNFSDEDESFEDDEDVKMNDIEEGELVEKISKTGLEETGDVCASSENPLPGKKNRRRRKNKGKNKSKRVSSGPITDINRFVLDVGRRLKERKSYLIWNAVGCLGLSALSDLVKEMPPGEAFFTPFSLMDLSSKIASAGTTLWCLFGLIPMFLPVFVVLPHGGCNSDLWRPEDC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="136822" e_stop="136901"/>
            <exon e_start="137360" e_stop="137632"/>
            <exon e_start="138034" e_stop="138139"/>
            <exon e_start="139357" e_stop="139500"/>
            <exon e_start="140173" e_stop="140379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="136822" e_stop="136901" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="136902" i_stop="137359" i_length="458"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="137360" e_stop="137632" e_length="273"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.883">
            <gDNA_intron_boundary i_start="137633" i_stop="138033" i_length="401"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="138034" e_stop="138139" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="138140" i_stop="139356" i_length="1217"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="139357" e_stop="139500" e_length="144"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.000">
            <gDNA_intron_boundary i_start="139501" i_stop="140172" i_length="672"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="140173" e_stop="140379" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136822" stop="136901"/>
              <exon start="137360" stop="137632"/>
              <exon start="138034" stop="138139"/>
              <exon start="139357" stop="139500"/>
              <exon start="140173" stop="140379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329355" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAGTTCCTTCAAAAACCCTACCTGTAAAACCCATCTAACCCAGAAGGTAATTGCAAGCTCTCAACAAGGAGAACTCG : GTTTTTCTCTAATTCAATGGAGCTAGAGGATAGCATTTTAAACTTCTCTGATGAAGACGAGAGCTTTGAGGATGATGAAGATGTTAAAATGAATGATATTGAGGAAGGAGAACTAGTTGAGAAGATCTCCAAGACTGGATTAGAGGAAACTGGTGATGTATGTGCCAGCTCTGAAAATCCTCTTCCAGGTAAAAAAAATCGGAGACGGAGGAAGAACAAGGGAAAGAACAAAAGCAAGAGAGTTTCTTCAGGTCCAATCACAGACATTAACAG : ATTTGTTTTGGATGTCGGAAGACGCTTGAAAGAGAGGAAATCTTATCTTATATGGAATGCTGTTGGTTGTCTCGGCCTATCTGCTTTGAGTGATCTTGTTAAAGAG : GTGGATGCAATTCAGACTTGTGGCGGCCAGAAGACTGCTGATGGCAGGCGTTTCCGAACAGGTGGTGGAATATTGTGGAGCATCCTTAAAGTACGAGATCCAAATGCATACAAAGAGATAATGAAGAAAGGGAAGGAGTTTGAG : AAGCAGTTTAGGCAGGCTAATCTCAAGCAAGAACCCCTCCAAAACAAAGAAGCTTCTTTGGAGAGATCTAGTCAGACAATAGGAGACGAGATTACAGCCAGTTGTTCAGATGTTTTGCTGCAGCAAGAACCTGTTGAACAGTCTAATAGTGGAGCCAAACGTGCATCTGTTCATGATAGAATAAGGATGCCTGTCACGTATGATGAT</gDNA_template>
            <first_frame> K  K  F  L  Q  K  P  Y  L  *  N  P  S  N  P  E  G  N  C  K  L  S  T  R  R  T  R :   F  F  S  N  S  M  E  L  E  D  S  I  L  N  F  S  D  E  D  E  S  F  E  D  D  E  D  V  K  M  N  D  I  E  E  G  E  L  V  E  K  I  S  K  T  G  L  E  E  T  G  D  V  C  A  S  S  E  N  P  L  P  G  K  K  N  R  R  R  R  K  N  K  G  K  N  K  S  K  R  V  S  S  G  P  I  T  D  I  N  R :   F  V  L  D  V  G  R  R  L  K  E  R  K  S  Y  L  I  W  N  A  V  G  C  L  G  L  S  A  L  S  D  L  V  K  E  :  V  D  A  I  Q  T  C  G  G  Q  K  T  A  D  G  R  R  F  R  T  G  G  G  I  L  W  S  I  L  K  V  R  D  P  N  A  Y  K  E  I  M  K  K  G  K  E  F  E  :  K  Q  F  R  Q  A  N  L  K  Q  E  P  L  Q  N  K  E  A  S  L  E  R  S  S  Q  T  I  G  D  E  I  T  A  S  C  S  D  V  L  L  Q  Q  E  P  V  E  Q  S  N  S  G  A  K  R  A  S  V  H  D  R  I  R  M  P  V  T  Y  D  D </first_frame>
            <second_frame>  K  S  S  F  K  N  P  T  C  K  T  H  L  T  Q  K  V  I  A  S  S  Q  Q  G  E  L   : G  F  S  L  I  Q  W  S  *  R  I  A  F  *  T  S  L  M  K  T  R  A  L  R  M  M  K  M  L  K  *  M  I  L  R  K  E  N  *  L  R  R  S  P  R  L  D  *  R  K  L  V  M  Y  V  P  A  L  K  I  L  F  Q  V  K  K  I  G  D  G  G  R  T  R  E  R  T  K  A  R  E  F  L  Q  V  Q  S  Q  T  L  T   : D  L  F  W  M  S  E  D  A  *  K  R  G  N  L  I  L  Y  G  M  L  L  V  V  S  A  Y  L  L  *  V  I  L  L  K  R :   W  M  Q  F  R  L  V  A  A  R  R  L  L  M  A  G  V  S  E  Q  V  V  E  Y  C  G  A  S  L  K  Y  E  I  Q  M  H  T  K  R  *  *  R  K  G  R  S  L  R :   S  S  L  G  R  L  I  S  S  K  N  P  S  K  T  K  K  L  L  W  R  D  L  V  R  Q  *  E  T  R  L  Q  P  V  V  Q  M  F  C  C  S  K  N  L  L  N  S  L  I  V  E  P  N  V  H  L  F  M  I  E  *  G  C  L  S  R  M  M   </second_frame>
            <third_frame>   K  V  P  S  K  T  L  P  V  K  P  I  *  P  R  R  *  L  Q  A  L  N  K  E  N  S  :  V  F  L  *  F  N  G  A  R  G  *  H  F  K  L  L  *  *  R  R  E  L  *  G  *  *  R  C  *  N  E  *  Y  *  G  R  R  T  S  *  E  D  L  Q  D  W  I  R  G  N  W  *  C  M  C  Q  L  *  K  S  S  S  R  *  K  K  S  E  T  E  E  E  Q  G  K  E  Q  K  Q  E  S  F  F  R  S  N  H  R  H  *  Q  :  I  C  F  G  C  R  K  T  L  E  R  E  E  I  L  S  Y  M  E  C  C  W  L  S  R  P  I  C  F  E  *  S  C  *  R   : G  G  C  N  S  D  L  W  R  P  E  D  C  *  W  Q  A  F  P  N  R  W  W  N  I  V  E  H  P  *  S  T  R  S  K  C  I  Q  R  D  N  E  E  R  E  G  V  *   : E  A  V  *  A  G  *  S  Q  A  R  T  P  P  K  Q  R  S  F  F  G  E  I  *  S  D  N  R  R  R  D  Y  S  Q  L  F  R  C  F  A  A  A  R  T  C  *  T  V  *  *  W  S  Q  T  C  I  C  S  *  *  N  K  D  A  C  H  V  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136852" stop="136901"/>
                    <exon start="137360" stop="137632"/>
                    <exon start="138034" stop="138139"/>
                    <exon start="139357" stop="139500"/>
                    <exon start="140173" stop="140379"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPSNPEGNCKLSTRRTRFFSNSMELEDSILNFSDEDESFEDDEDVKMNDIEEGELVEKISKTGLEETGDVCASSENPLPGKKNRRRRKNKGKNKSKRVSSGPITDINRFVLDVGRRLKERKSYLIWNAVGCLGLSALSDLVKEVDAIQTCGGQKTADGRRFRTGGGILWSILKVRDPNAYKEIMKKGKEFEKQFRQANLKQEPLQNKEASLERSSQTIGDEITASCSDVLLQQEPVEQSNSGAKRASVHDRIRMPVTYDD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="143789" PGL_stop="142114"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143789" e_stop="143736"/>
            <exon e_start="143516" e_stop="143274"/>
            <exon e_start="143155" e_stop="142961"/>
            <exon e_start="142545" e_stop="142114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.996" e_score="0.944"/>
          <exon-intron don_prob="0.991" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.996" e_score="0.995"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="143789" e_stop="143736" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.996">
            <gDNA_intron_boundary i_start="143735" i_stop="143517" i_length="219"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="143516" e_stop="143274" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.919">
            <gDNA_intron_boundary i_start="143273" i_stop="143156" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="143155" e_stop="142961" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.996">
            <gDNA_intron_boundary i_start="142960" i_stop="142546" i_length="415"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="142545" e_stop="142114" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143789" stop="143736"/>
              <exon start="143516" stop="143274"/>
              <exon start="143155" stop="142961"/>
              <exon start="142545" stop="142114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324496" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGAAAAAAGTTCCACCTCTATGCAAAGCAAATGAGAACCCAGATGCATCCTG : GTATGTGCCGATTAAATCTTGCTTGCACACAATTCCTGAATCCATAGAACAAAGAGGAACCGAATGGCCTGAGGAGTGGCCTAAGAGACTTGAAACTTATCCCGAATGGATGAACAATAGAGAGAAATTGATCGCAGACAGTGAGCACTGGAAAGCTATTGTTGACCATTCTTATTTAGTTGGCTTGGGTATTGAATGGTCCAACATTCGGAATGTAATGGATATGAAAGCCATCAATGGAGG : ATTTGCAGCAGCTCTTGCACAGCAGAAGGTGTGGGTGATGAATGTTATTCCTGTACATGCACCAAACACCCTTCCCGTAGTCTTTGAAAGAGGACTTATTGGCGTGTACCACGATTGGTGTGAGGCTTTTGGTACTTATCCAAGATCATACGACCTTCTACATGCAGATCATCTCTTCTCAAGGCTTAAGAACAG : GTGCAAGCATCCCATTGTGATTGTGGTTGAGATGGACCGTATATTACGGCCTGGTGGCTGGGGAATCATACGTGACAAGGTCGAAATACTTGATCCATTAGAGAAAATATTGAGAAGCTTGCACTGGGAGATACGAATGACTTTTGCCAAAGATAAGGAAGGCATCCTTTGTGCTCAGAAGACAATGTGGAGACCTTGATGAATGCTTAGAAGCAAGTCATCTGATTATTTGGACTACAGATTCCAGTCATTTTCCTGCTGGTTATCTATACACAGTGCCATTCTTGCCAACAATTGTGTTCCCTGTTCACATATTGCAAAAGAAATTGTCGTGGATCCAGAATTTAGACGTTGTGAGTATTGAGTTCGGAAATGTATACAAAGATTTAATTCATTGTTGGATCATCTCTGAAAGGAAAGTATTTTCCAACA</gDNA_template>
            <first_frame> K  E  K  S  S  T  S  M  Q  S  K  *  E  P  R  C  I  L  :  V  C  A  D  *  I  L  L  A  H  N  S  *  I  H  R  T  K  R  N  R  M  A  *  G  V  A  *  E  T  *  N  L  S  R  M  D  E  Q  *  R  E  I  D  R  R  Q  *  A  L  E  S  Y  C  *  P  F  L  F  S  W  L  G  Y  *  M  V  Q  H  S  E  C  N  G  Y  E  S  H  Q  W  R  :  I  C  S  S  S  C  T  A  E  G  V  G  D  E  C  Y  S  C  T  C  T  K  H  P  S  R  S  L  *  K  R  T  Y  W  R  V  P  R  L  V  *  G  F  W  Y  L  S  K  I  I  R  P  S  T  C  R  S  S  L  L  K  A  *  E  Q  :  V  Q  A  S  H  C  D  C  G  *  D  G  P  Y  I  T  A  W  W  L  G  N  H  T  *  Q  G  R  N  T  *  S  I  R  E  N  I  E  K  L  A  L  G  D  T  N  D  F  C  Q  R  *  G  R  H  P  L  C  S  E  D  N  V  E  T  L  M  N  A  *  K  Q  V  I  *  L  F  G  L  Q  I  P  V  I  F  L  L  V  I  Y  T  Q  C  H  S  C  Q  Q  L  C  S  L  F  T  Y  C  K  R  N  C  R  G  S  R  I  *  T  L  *  V  L  S  S  E  M  Y  T  K  I  *  F  I  V  G  S  S  L  K  G  K  Y  F  P  T </first_frame>
            <second_frame>  R  K  K  V  P  P  L  C  K  A  N  E  N  P  D  A  S  W :   Y  V  P  I  K  S  C  L  H  T  I  P  E  S  I  E  Q  R  G  T  E  W  P  E  E  W  P  K  R  L  E  T  Y  P  E  W  M  N  N  R  E  K  L  I  A  D  S  E  H  W  K  A  I  V  D  H  S  Y  L  V  G  L  G  I  E  W  S  N  I  R  N  V  M  D  M  K  A  I  N  G  G :   F  A  A  A  L  A  Q  Q  K  V  W  V  M  N  V  I  P  V  H  A  P  N  T  L  P  V  V  F  E  R  G  L  I  G  V  Y  H  D  W  C  E  A  F  G  T  Y  P  R  S  Y  D  L  L  H  A  D  H  L  F  S  R  L  K  N  R :   C  K  H  P  I  V  I  V  V  E  M  D  R  I  L  R  P  G  G  W  G  I  I  R  D  K  V  E  I  L  D  P  L  E  K  I  L  R  S  L  H  W  E  I  R  M  T  F  A  K  D  K  E  G  I  L  C  A  Q  K  T  M  W  R  P  *  *  M  L  R  S  K  S  S  D  Y  L  D  Y  R  F  Q  S  F  S  C  W  L  S  I  H  S  A  I  L  A  N  N  C  V  P  C  S  H  I  A  K  E  I  V  V  D  P  E  F  R  R  C  E  Y  *  V  R  K  C  I  Q  R  F  N  S  L  L  D  H  L  *  K  E  S  I  F  Q   </second_frame>
            <third_frame>   G  K  K  F  H  L  Y  A  K  Q  M  R  T  Q  M  H  P   : G  M  C  R  L  N  L  A  C  T  Q  F  L  N  P  *  N  K  E  E  P  N  G  L  R  S  G  L  R  D  L  K  L  I  P  N  G  *  T  I  E  R  N  *  S  Q  T  V  S  T  G  K  L  L  L  T  I  L  I  *  L  A  W  V  L  N  G  P  T  F  G  M  *  W  I  *  K  P  S  M  E   : D  L  Q  Q  L  L  H  S  R  R  C  G  *  *  M  L  F  L  Y  M  H  Q  T  P  F  P  *  S  L  K  E  D  L  L  A  C  T  T  I  G  V  R  L  L  V  L  I  Q  D  H  T  T  F  Y  M  Q  I  I  S  S  Q  G  L  R  T   : G  A  S  I  P  L  *  L  W  L  R  W  T  V  Y  Y  G  L  V  A  G  E  S  Y  V  T  R  S  K  Y  L  I  H  *  R  K  Y  *  E  A  C  T  G  R  Y  E  *  L  L  P  K  I  R  K  A  S  F  V  L  R  R  Q  C  G  D  L  D  E  C  L  E  A  S  H  L  I  I  W  T  T  D  S  S  H  F  P  A  G  Y  L  Y  T  V  P  F  L  P  T  I  V  F  P  V  H  I  L  Q  K  K  L  S  W  I  Q  N  L  D  V  V  S  I  E  F  G  N  V  Y  K  D  L  I  H  C  W  I  I  S  E  R  K  V  F  S  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143788" stop="143736"/>
                    <exon start="143516" stop="143274"/>
                    <exon start="143155" stop="142961"/>
                    <exon start="142545" stop="142347"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKKVPPLCKANENPDASWYVPIKSCLHTIPESIEQRGTEWPEEWPKRLETYPEWMNNREKLIADSEHWKAIVDHSYLVGLGIEWSNIRNVMDMKAINGGFAAALAQQKVWVMNVIPVHAPNTLPVVFERGLIGVYHDWCEAFGTYPRSYDLLHADHLFSRLKNRCKHPIVIVVEMDRILRPGGWGIIRDKVEILDPLEKILRSLHWEIRMTFAKDKEGILCAQKTMWRP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="146977" PGL_stop="146154"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="146977" e_stop="146154"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="146977" e_stop="146154" e_length="824"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146977" stop="146154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329240" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATTCTCTCTTGAGCTGCCAAGATTCTTGTTTTGGGGTAAAAAAAGATTGTTGCTTTTGTTGTTTATATGGAATTCTGATTTCTGGGTATGTCTCAGGTTTTTGTTTGAGTTAGAAATGAGGAAGCACAACACAGCTTTAACAAGATTTGGGAGAAAGGTAAAAGGTTCATATCAATCTTATGGTCTTGGTGTTAAGTTAGCTGCAGTAGTAATTTTGGGTCTTTGTTTTGTATTCATTTGGTCTGTGTTTTCACCTTCTTCTTATTCAGTAGCCTATCAAAGGGACACTTTTGATGATATTAGAGAACCTATTTCATCTGCAAATAGGAAAAAGGTTACACCTTTAGTTCCTTCAACTAAGAAAGAACAACCCCATAATAAGAAACTGAAACATAGATCAAGTTCTGGTGAGAAAAAGAAGAGGGTTGATAGGTCTTCTTTGCCTTCAAAATCTGGTGGTTGGCATAAGAATGATAAAAGTGGAGTTGATAGGAAGAGAAAAGGTGAGGATCTGAAGTTACCCGAAAAGGTTGATGAGGTGAAGGAACAAGAATTGGAAGGATCTGAAACTGATGTGTTGGAGAAGGAGAATGAGGAAGACAAAATAGGAAATGATAAGCAAGAAGAAGAGAAAAAAGTAGTTGAAGTTAAAGAGAATGAGAAAGAAAAAACAGAAAATAATAGTAAACAAGAAGGAGAAGGAGTGGATGGTAAAGAGAATGAGAAAGAGGAAATAGAAAGTACTAAAGAAGAAGAAGGAGAAGGAGAAGGAGAAGGAACAGTAGATGGTAATGAAGGTAATGGTGAAATAGCTAATACTG</gDNA_template>
            <first_frame> S  I  L  S  *  A  A  K  I  L  V  L  G  *  K  K  I  V  A  F  V  V  Y  M  E  F  *  F  L  G  M  S  Q  V  F  V  *  V  R  N  E  E  A  Q  H  S  F  N  K  I  W  E  K  G  K  R  F  I  S  I  L  W  S  W  C  *  V  S  C  S  S  N  F  G  S  L  F  C  I  H  L  V  C  V  F  T  F  F  L  F  S  S  L  S  K  G  H  F  *  *  Y  *  R  T  Y  F  I  C  K  *  E  K  G  Y  T  F  S  S  F  N  *  E  R  T  T  P  *  *  E  T  E  T  *  I  K  F  W  *  E  K  E  E  G  *  *  V  F  F  A  F  K  I  W  W  L  A  *  E  *  *  K  W  S  *  *  E  E  K  R  *  G  S  E  V  T  R  K  G  *  *  G  E  G  T  R  I  G  R  I  *  N  *  C  V  G  E  G  E  *  G  R  Q  N  R  K  *  *  A  R  R  R  E  K  S  S  *  S  *  R  E  *  E  R  K  N  R  K  *  *  *  T  R  R  R  R  S  G  W  *  R  E  *  E  R  G  N  R  K  Y  *  R  R  R  R  R  R  R  R  R  R  N  S  R  W  *  *  R  *  W  *  N  S  *  Y   </first_frame>
            <second_frame>  Q  F  S  L  E  L  P  R  F  L  F  W  G  K  K  R  L  L  L  L  L  F  I  W  N  S  D  F  W  V  C  L  R  F  L  F  E  L  E  M  R  K  H  N  T  A  L  T  R  F  G  R  K  V  K  G  S  Y  Q  S  Y  G  L  G  V  K  L  A  A  V  V  I  L  G  L  C  F  V  F  I  W  S  V  F  S  P  S  S  Y  S  V  A  Y  Q  R  D  T  F  D  D  I  R  E  P  I  S  S  A  N  R  K  K  V  T  P  L  V  P  S  T  K  K  E  Q  P  H  N  K  K  L  K  H  R  S  S  S  G  E  K  K  K  R  V  D  R  S  S  L  P  S  K  S  G  G  W  H  K  N  D  K  S  G  V  D  R  K  R  K  G  E  D  L  K  L  P  E  K  V  D  E  V  K  E  Q  E  L  E  G  S  E  T  D  V  L  E  K  E  N  E  E  D  K  I  G  N  D  K  Q  E  E  E  K  K  V  V  E  V  K  E  N  E  K  E  K  T  E  N  N  S  K  Q  E  G  E  G  V  D  G  K  E  N  E  K  E  E  I  E  S  T  K  E  E  E  G  E  G  E  G  E  G  T  V  D  G  N  E  G  N  G  E  I  A  N  T  </second_frame>
            <third_frame>   N  S  L  L  S  C  Q  D  S  C  F  G  V  K  K  D  C  C  F  C  C  L  Y  G  I  L  I  S  G  Y  V  S  G  F  C  L  S  *  K  *  G  S  T  T  Q  L  *  Q  D  L  G  E  R  *  K  V  H  I  N  L  M  V  L  V  L  S  *  L  Q  *  *  F  W  V  F  V  L  Y  S  F  G  L  C  F  H  L  L  L  I  Q  *  P  I  K  G  T  L  L  M  I  L  E  N  L  F  H  L  Q  I  G  K  R  L  H  L  *  F  L  Q  L  R  K  N  N  P  I  I  R  N  *  N  I  D  Q  V  L  V  R  K  R  R  G  L  I  G  L  L  C  L  Q  N  L  V  V  G  I  R  M  I  K  V  E  L  I  G  R  E  K  V  R  I  *  S  Y  P  K  R  L  M  R  *  R  N  K  N  W  K  D  L  K  L  M  C  W  R  R  R  M  R  K  T  K  *  E  M  I  S  K  K  K  R  K  K  *  L  K  L  K  R  M  R  K  K  K  Q  K  I  I  V  N  K  K  E  K  E  W  M  V  K  R  M  R  K  R  K  *  K  V  L  K  K  K  K  E  K  E  K  E  K  E  Q  *  M  V  M  K  V  M  V  K  *  L  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0075G11.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146976" stop="146155"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFSLELPRFLFWGKKRLLLLLFIWNSDFWVCLRFLFELEMRKHNTALTRFGRKVKGSYQSYGLGVKLAAVVILGLCFVFIWSVFSPSSYSVAYQRDTFDDIREPISSANRKKVTPLVPSTKKEQPHNKKLKHRSSSGEKKKRVDRSSLPSKSGGWHKNDKSGVDRKRKGEDLKLPEKVDEVKEQELEGSETDVLEKENEEDKIGNDKQEEEKKVVEVKENEKEKTENNSKQEGEGVDGKENEKEEIESTKEEEGEGEGEGTVDGNEGNGEIANT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 51 chains have been computed
$ 
$ memory statistics:
$ 78088 bytes spliced alignments in total
$ 37 spliced alignments have been stored
$ 2110 bytes was the average size of a spliced alignment
$ 28288 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1571 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 59 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:44:28
-->
