<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:34:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337650" ref_strand="+" ref_description="SGN-E337650 [cTOE-11-N16]">
      <seq>tgcattgtgtcttcataatcctgtgaaccgtcatgccaaaagcctttggagaagagcacaggcatatgacatgcttggtttagctaaggagagcttattagatgctattctgtttataaatgagtgttcacaatcaaatgatcctgatctgtctttaaggcaaaacaaggttcctgattatgctgagcgtttggtaaaaaagcagatgcgtgcagcttggttatttagagaggctgctattaaacatggtggagttcaatgtgagggtgatgctggagacatgtgtggccaggaaactgatgattcagaatgggagacagcaagtgaaagtgaaattggaaatgaggagagagatgaaattggcgatgatatttgtggatgggaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="2927" stop="3915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3227" g_stop="3615" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E337650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3227" e_stop="3615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTGTGTCTTCATAATCCTGTGAACCGTCATGCCAAAAGCCTTTGGAGAAGAGCACAGGCATATGACATGCTTGGTTTAGCTAAGGAGAGCTTATTAGATGCTATTCTGTTTATAAATGAGTGTTCACAATCAAATGATCCTGATCTGTCTTTAAGGCAAAACAAGGTTCCTGATTATGCTGAGCGTTTGGTAAAAAAGCAGATGCGTGCAGCTTGGTTATTTAGAGAGGCTGCTATTAAACATGGTGGAGTTCAATGTGAGGGTGATGCTGGAGACATGTGTGGCCAGGAAACTGATGATTCAGAATGGGAGACAGCAAGTGAAAGTGAAATTGGAAATGAGGAGAGAGATGAAATTGGCGATGATATTTGTGGATGGGAAAATG</genome_strand>
        <mrna_strand>TGCATTGTGTCTTCATAATCCTGTGAACCGTCATGCCAAAAGCCTTTGGAGAAGAGCACAGGCATATGACATGCTTGGTTTAGCTAAGGAGAGCTTATTAGATGCTATTCTGTTTATAAATGAGTGTTCACAATCAAATGATCCTGATCTGTCTTTAAGGCAAAACAAGGTTCCTGATTATGCTGAGCGTTTGGTAAAAAAGCAGATGCGTGCAGCTTGGTTATTTAGAGAGGCTGCTATTAAACATGGTGGAGTTCAATGTGAGGGTGATGCTGGAGACATGTGTGGCCAGGAAACTGATGATTCAGAATGGGAGACAGCAAGTGAAAGTGAAATTGGAAATGAGGAGAGAGATGAAATTGGCGATGATATTTGTGGATGGGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707100" ref_strand="+" ref_description="SGN-E707100 [FA32AC06]">
      <seq>ctttgatgctgatcagagattaactcaagatctggagaagctaaccgctgacttgtctagtctggtaactggaatggtgaagccaactgttgacattctatggttcacatggagaatgaaaatgctaactggccagaggggagtcgctatattgtatgcttacatgttattaggtttgggtttcctgagatgtgttactcctgactttggtgaactggcaagtcgagaacaacagcttgaaggaactttcaggttcatgcatgaaaggttgcgaacacatgctgaatctgttgctttctttggaggtggtgctcgtgaaaaagagatggttgaagcaaggtttaaagaacttcttcaccactcttctttgcttcttaagaagaaatggttatttggcataatagatgagttcatcacgaagcagcttcctcacaatgttacttggggattgagtttgttgtatgctatggagcacaagggcgaccgggctttgacttcaactcaagatgtacctgaaggtgttagttcatcgccatcctctgaggatgtaatttctttctctgaagtggacatcattacaccaggacaaaaagtcttggctaggaagctaacatgtgatatagtgaaggggaaaagccttcttgtaactggccctaatggaagtggaaagagttcaatcttcagagtccttcgtggtttatggccagtcgtgagtggaaatctagttaaaccaggccaaccgcttaactcagaattaggcagtggcatcttctatgtaccccaacgaccatatacgtgcttaggaactctaanggatcaaattacatatcctctctcacatgaagtggctgagaaaagggtacaggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="35646" stop="42006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35946" g_stop="36047" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36048" i_stop="36126" i_length="79">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36127" g_stop="36276" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="252" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36277" i_stop="36352" i_length="76">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36353" g_stop="36425" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="325" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36426" i_stop="39639" i_length="3214">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39640" g_stop="39820" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="506" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39821" i_stop="41269" i_length="1449">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41270" g_stop="41413" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="650" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41414" i_stop="41487" i_length="74">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41488" g_stop="41706" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="869" r_length="219" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E707100" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35946" e_stop="36047"/>
          <exon e_start="36127" e_stop="36276"/>
          <exon e_start="36353" e_stop="36425"/>
          <exon e_start="39640" e_stop="39820"/>
          <exon e_start="41270" e_stop="41413"/>
          <exon e_start="41488" e_stop="41706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGATGCTGATCAGAGATTAACTCAAGATCTGGAGAAGCTAACCGCTGACTTGTCTAGTCTGGTAACTGGAATGGTGAAGCCAACTGTTGACATTCTATGGTAAGTTTCTTTTGTGGCTGTCAAGCTAATGTTTAAACAGTATGATTTCTGGTTTTATAGAGGTACTACTGAAATGCAGGTTCACATGGAGAATGAAAATGCTAACTGGCCAGAGGGGAGTCGCTATATTGTATGCTTACATGTTATTAGGTTTGGGTTTCCTGAGATGTGTTACTCCTGACTTTGGTGAACTGGCAAGTCGAGAACAACAGCTTGAAGGAACTTTCAGGTTACCTGATATTTTAGTTACTGCTTATCTTATTGTGTTTAGATAGGCTATGTTACACTTGAGTATCTGTTGTCAGGTTCATGCATGAAAGGTTGCGAACACATGCTGAATCTGTTGCTTTCTTTGGAGGTGGTGCTCGTGAAAAAGAGGTAGTAATATTTTTTTGCAACAATATTTTTTTCAGCAGTGGGACCGTTCAGAAATAAGATATATAGGAGCGTTTGTCTGATATTTGTGTATATGCATATACATTGAGGTGATCGTTTTCCCCTGCGACATGCTAGAGATTTGCTGGTATAGTAAATTTTGTTCCTGTTTATGCCTCCTATTTGGAAAAAAAGAAGAAGCGGGTAATAAGCTGGACTGTTTTAAGCTGTTTTCATCTCTTTGTATCTATTGCTACATATTTACATCAAGAGCTCACTGTACTTTAAGAAGTTAATTGTCGGCCCAAAAGTGGGGCTGAGATGTTACATTTAAGGATGACGTTTGACATGTCTGGATTTATGGGTAATACAAGAAGAATGCTTTTTCTATTCAATAGAATTTTTTTCTTTTTAATAGAGAAATTTGCCACAGGCTTTGAAGTGTACAAGACATGTATTGGCCTTGGCCTTTGGGTATCTATCCAGTACCTATCTTGGAGATTGTAGTAGTACGTTGTTTTTTTCTCTAGACTTACAAAGTCCAAAACAAAAGAACATGCCAAATCTAATCGACGTGACCTTCCAGACATCTTTGTTTTATCCAAGAAAAAGGTTTTTTCTTCTAAAAGTTTGGTTGATAATCTGTCCCTTTTCAAGTAAATCTAGTTGTCGTTTTATTGGCTAGTGAGGAGATGTGATCTCTGCATGCAATTCAAAATTTACTAATGCAATGTTTGGTTCTTACTTTTTGCCAGATGGAATATGGAATAAGAATGCGAGTACTTTTAGTAATTTAAGGATTTTAAAAAAACTTAAACTACAAAATGTCCTTCATTAACGTAAGCAAAATAAACATTTAAAAATTAAAGTACATTCAAATTATGGTACGTTCTTATCAAAAAAATTATGTATGGATTACTATTTCGTAGTATATCAAACTGCACATTTAACAGGGAGTAATCTCTGCATTACATTCCTTTATAACTGCCCGTGTTGGCAGTGGCGTAGCCACATCATCGGGAAAAAATACCGTATATACAAGTAAAATGATACACGAAATGATTAAGTAACATATTTTGGACAACCTTAACATAACAAGCTGTTATAGCCCAGTGGTTTCACTTCCTTAGCTTAGAATGGGGAAGTACTCGTGTGTTTGAATCTCACTAGTTCTACTTTTTTATAAGAGTTTTTGTTGTGCTATTTTTGGACACCCTTTGTGAAATTCTTGGCTCCGCCACTGCGAATTGGTGGGATGTAGCTGTACTTGATAGAATAGTCGAGATGTGCATGAATTCAGTCACCTCTGTTATGTCATAGAAAACGTGATTCTTATAAAATATTGAGTACCTATCTTGAAGCATGCATGGATATCTCAATTCCAGCCAATAATCTTCTCTACTTTTGCTTCTGCATAATTTAAGACTGTCTATTGGGATATTTGTATCGTCTGTTATCCCATTGTTTAACTACTACCTACTCTACATGTAAATTCATGGACAATATATAGCAGCTTAATGAACCTTGAGAAAAGATATGTTGACTTAATCATATGTATAAGCAAAATCTGCAGTTAATGGTCTTTGAGATGAATAACAATAGGGTAATAGCTTTACTGCCTCCAAATTTTGCATATGTAACAGCCTAAACCAGTCAATTTCCTTCATTACTTGGCCTCTATGTGTAAGCTGTATATCGAAAAAGGTTGTTTTTGTAGATAATCACATGTGTTTACTGGACTTTTCTTGTAATTGGCTGTGGAAAATGCATTTCCATTTCTTTGTTCATATATTTGTCATTCATGCTTATAATTATATTTCGTGGACTGAATATATTTATTTGTATTTTTTCTTGCTTTGCGCCTTTTCTCAATTAAAACTCACTCTTTATCTGTGCTTTGCACTTGAAGCCTTAATTGACCTTAACAGTGTTTTTCTTTTTTTTGCGTTCACTGGGTTGAATTAAGTGTAAGATCCTTCTTCTTCACTTATTGTTATGGTCAGTCTCATCACTTTTCTTGGTTTACCTAATATTGGCCCCCAATATTATATTTTCCAAGTTCTAGATGTCCAAATCTAGACGTACAGAGGGGGAGGGGGTGACATTGAGGCAATTAATGATTGTCCCCTCATATTGTTTTAAGTAATCCTCACCCTAGGAGTCAGCTTTTGGGATTGACTTTAAGCGTAAGATCTATTCTTTACACTAATCATTAGCCTTAATTTGTTAGCCATTTTTTATTTTTAAAATAAACAACATTTGAATCAAAATGGAGAAATTAAAGATATAGAGACACTGTTGTCAAAAGCACGCATAGGCCTTGAAGCGAGTCTCAAAACGTGTTGAGCACTTGGCCTCGCTTAATGTGTGCTCTAATGTTGTCATTAAAATTCTAAGACATACTTCTCTTCATCAATGAGCCTCTTTAAGGGGTGATAACTAAACAATTGATATTTCATTTTATCATTTTTTTTCTCACCTTCTTTGTTCATATATATGTCATTCATGTTTTTAATTATTTGTCTTGGACTAAACATATATATTTGTATTTGTTTCTCCCTCTTCACCCTTTTTCATTAGCCCACACTTCATTTGCGCTTAAAACCCCAACAGGCCTTAGACTTTTTTGTGCTTTTTTGCTTTTGATAAATGATCAGAGACAGACAAGGAAAGAAGAATATAAAATTGCAGCAAGAGAGATTAGGAGAGAAAGAACTATCCCGAGAAATAAGAAAAGACAGAGAGAGAGAGAGGAAAAGAAGGAAAGCTCCAAAAGAGTAGTACAATAGGCTTGATTACAGTAGTGAAGTAGGATTAATACAAGAATAATCATTGACGAAAGATGCTAAAGAGAACAAAGAAGCTTACCTGATGGGATGGAACTTATTTCTCTTTTTACCGTCTTTTAAAGTCAATACCAAATAAAAGACCTGCTTCTCACTTGTAATTCTTTTCACCCGCTGCCTGAAGCTTTGGTCTTCTATGGAGTTGCATTGCTTCACCCATGAGAAGCAACAACCTCTTGCTTTGCATCTCTCGATTGCTTTAAAGCAATGAAATGACCTCTTTTAATAATACATGTTGTTCTTGGAATATCTTTCTTTAGCTCATACTGGTAAGGATTAGTAGAGGATTCTTGATTTTGTTATGTCCTTTACTGTTTTCTTGTTTATCCAGTTACCTCTTGCACGATACTGATACATGTTATGCATGACAGATGGTTGAAGCAAGGTTTAAAGAACTTCTTCACCACTCTTCTTTGCTTCTTAAGAAGAAATGGTTATTTGGCATAATAGATGAGTTCATCACGAAGCAGCTTCCTCACAATGTTACTTGGGGATTGAGTTTGTTGTATGCTATGGAGCACAAGGGCGACCGGGCTTTGACTTCAACTCAAGGTGATTCCCAATTAACTATGAATTTGTGTATTTTTATGCTGTTAATATTTTTGTGAAAAATTACCTATTCTTTTTACTGTCCCTTTTTTTTTAGGTGAACTTGCTCATGCACTGCGATTTTTAGCATCTGTTGTGTCTCAAAGCTTTTTAGCTTTTGGTGACATTCTTGAGCTCCACAAAAAATTTGTTGAGCTTTCTGGTGGTATCAATAGAATTTTTGAGCTGGAAGAGTTTCTAGATGCTGCTCAATATGGTGGGTGTGATTTGACTTTTAATTTTCTCTTGTTTCTGTCACTTCCCTCTCTCAAATGCTCTTCCCTGGTTATAAAAATTTGTGCAACACTTAATGATTAAGCTCCGAGCATTATGCTGTAAACCTTTGAGTTGATAGGCCCGTTTGAGTCAATTGCAATAGTATTGTAGATGTCATGGTTTTGAGTGTGAAGTAGAGGCGAGCATGAACTTGGTAAAGAAATTGAAGATAGATAAATCCAATGGGAAGTTTTTTCTTTTGTTAAAAGCTTATTTGGATGGTTAATGCTAGTGAATATGCGGAAAATTCTTAGTTTTGGCTGATAAATTCTTGGGACGAAAGTGTTCATATTGAAGATGCCACAACTAGGTTATGCTAATGAATGACCAAGCCAATTTGTTCCGAGGCTTTTGATATAGTGGCGTACATAGTTGCTAGACTACGTAACATGGATTCCATGGGAACCATCTTTTATTAATAAATAGAGCTCTTTCTAGCCACACCAGAAATATGTATATCCAGTAAATAAGAATTGTTACCAATCATAATTATTTGTCTGAATATTTTACCATCTTTCTTTTCTTTTTCCTTTGAACAACATTCATGTTTCCCAGTTCTTCTATGACCTCTCTTTCTGTCAACGCCATCTAATTATCTTTTCTTCTTGATTCTTGAGAAAAAGATTATAACATCGCTGAGGATAATCGCTAGCATTGCCAGAAAAATTTGAGGGAACAAGTGTGCATCTGTAATTATTATATCTAGCACGCAAAGGAACTATGACTCAATTTCTAGGGTCAATTTTGATTTTGAACGGTTAGAACTTCACATTTACCAGAAATTGTTCGGAATTTCTGCTTATATATATGGGAAATTTGGTATAAAGTAGGTTGACATTTAGCTATAATACTGGCAACAGCCTCTCTACCTTCACATTACCTTCCCAGAGCCTACTTGTGGGATTACAATAGGTATGTTTGTTGTATTGGAATAGCAAAATCAAATAGCTGAAGCTAAATTTGTTTCCGACAAAGTCCCTGATATCTACCAGTGCTGAAAACTGCCTAAAACCATTCAGTTCTGGCATCACACATAGTGGTCTTTCCTTATCAAATTGGTTTTGGCTGTTTTGTTTAATACTAGTCTGCAGATGTTAGTATCATTGTTTGGAACTGATGTTTCTTGTATGCATGCAGATGTACCTGAAGGTGTTAGTTCATCGCCATCCTCTGAGGATGTAATTTCTTTCTCTGAAGTGGACATCATTACACCAGGACAAAAAGTCTTGGCTAGGAAGCTAACATGTGATATAGTGAAGGGGAAAAGCCTTCTTGTAACTGGTTAGTGGCCAGATCACCTTTACTTATACTTGAGTATATAGTGATATTACATGCTAACTACTTCCTTTGTGAAGGCCCTAATGGAAGTGGAAAGAGTTCAATCTTCAGAGTCCTTCGTGGTTTATGGCCAGTCGTGAGTGGAAATCTAGTTAAACCAGGCCAACCGCTTAACTCAGAATTAGGCAGTGGCATCTTCTATGTACCCCAACGACCATATACGTGCTTAGGAACTCTAAGGGATCAAATTACATATCCTCTCTCACATGAAGTGGCTGAGAAAAGGGTACAGGCTA</genome_strand>
        <mrna_strand>CTTTGATGCTGATCAGAGATTAACTCAAGATCTGGAGAAGCTAACCGCTGACTTGTCTAGTCTGGTAACTGGAATGGTGAAGCCAACTGTTGACATTCTATG...............................................................................GTTCACATGGAGAATGAAAATGCTAACTGGCCAGAGGGGAGTCGCTATATTGTATGCTTACATGTTATTAGGTTTGGGTTTCCTGAGATGTGTTACTCCTGACTTTGGTGAACTGGCAAGTCGAGAACAACAGCTTGAAGGAACTTTCAG............................................................................GTTCATGCATGAAAGGTTGCGAACACATGCTGAATCTGTTGCTTTCTTTGGAGGTGGTGCTCGTGAAAAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTGAAGCAAGGTTTAAAGAACTTCTTCACCACTCTTCTTTGCTTCTTAAGAAGAAATGGTTATTTGGCATAATAGATGAGTTCATCACGAAGCAGCTTCCTCACAATGTTACTTGGGGATTGAGTTTGTTGTATGCTATGGAGCACAAGGGCGACCGGGCTTTGACTTCAACTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACCTGAAGGTGTTAGTTCATCGCCATCCTCTGAGGATGTAATTTCTTTCTCTGAAGTGGACATCATTACACCAGGACAAAAAGTCTTGGCTAGGAAGCTAACATGTGATATAGTGAAGGGGAAAAGCCTTCTTGTAACTG..........................................................................GCCCTAATGGAAGTGGAAAGAGTTCAATCTTCAGAGTCCTTCGTGGTTTATGGCCAGTCGTGAGTGGAAATCTAGTTAAACCAGGCCAACCGCTTAACTCAGAATTAGGCAGTGGCATCTTCTATGTACCCCAACGACCATATACGTGCTTAGGAACTCTAANGGATCAAATTACATATCCTCTCTCACATGAAGTGGCTGAGAAAAGGGTACAGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540407" ref_strand="-" ref_description="SGN-E540407 [TUS-60-K16]">
      <seq>gagaacaacaacgattaggaatggcacgcttattttttcacaagccacggtttggaatccttgacgaatgtacaaatgctactagtgttgatgttgaagaacacctgtataggcttgctaaggatgctggcattactgttgttacatcctcacagcgccctgctttaatacctttccattctgtggaattacggttgattgatggtgaaggcaagtggcagctgctttcaattaagatggatgaggagggggaagacgaaccaaatgaatacacacaacaattgtgagtacgatgatgtattccaatgttgtgaaaacgttcatagagccaaaaataatgaatgaattatgaatgtaatagtttgcagttagattgagggtaggaaactatatagttagggtatacaaaaactattttaagttgtttcttgtaatatttcatatagttaactgtgtatagcgcctagttcccgtcgttgtaaaaggtttaggcataatctttccggtcagctctccgtgaataaaaatggcaggtagaaaaggaggctgacagattaatttacttatattatcttctacattttacaatgtattttgatgatatttttctgtttaaatataccaaaaatttaatggagtgtatatttttgccctctctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="43652" stop="45216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43952" g_stop="43974" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43975" i_stop="44078" i_length="104">
            <donor d_prob="0.960" d_score="0.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44079" g_stop="44131" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="76" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44132" i_stop="44232" i_length="101">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44233" g_stop="44311" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="155" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44312" i_stop="44406" i_length="95">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.715" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44407" g_stop="44909" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="658" r_length="503" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="659" polyA_stop="689"/>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E540407" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540407" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43952" e_stop="43974"/>
          <exon e_start="44079" e_stop="44131"/>
          <exon e_start="44233" e_stop="44311"/>
          <exon e_start="44407" e_stop="44909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACAACAACGATTAGGAATGGTGAGCTCAAAAAGTGCTGATTATTTTCTGACCCAAAAACTTTGTTTAGAAATATATTTCATATTTTGTTTCTTTGCTGCTAACTGATTTGGCATTTCTACAAGGCACGCTTATTTTTTCACAAGCCACGGTTTGGAATCCTTGACGAATGTACAAAGTAAGTAAACAAGCTCAGATCTCAGTGTTCTCCAATTAGCATATGGAAGCTTTTCTATGACCTCGTATACCTGACCTTGCTATTTCCTCTTCTATTTGCAGTGCTACTAGTGTTGATGTTGAAGAACACCTGTATAGGCTTGCTAAGGATGCTGGCATTACTGTTGTTACATCCTCACAGGTTTGCATCCATGTCTCATATTGTCATCGGCATTTCTTATGGCCATCATCAACCCATCTCTTATCCAACTTTTTTCTTGCTCTGTTTTTCCTCAGCGCCCTGCTTTAATACCTTTCCATTCTGTGGAATTACGGTTGATTGATGGTGAAGGCAAGTGGCAGCTGCGTTCAATTAAGATGGATGAGGAGGGGGAAGACGAACCAAATGAATACACACAACAATTGTGAGTACGATGATGTATTCCAATGTTGTGAAAACGTTCATAGAGCCAAAAATAATGAATGAATTATGAATGTAATAGTTTGCAGTTAGATTGAGGGTAGGAAACTATATAGTTAGGGTATACAAAAACTATTTTAAGTTGTTTCTTGTAATATTTCATATAGTTAACTGTGTATAGCGCCTAGTTCCCGTCGTTGTAAAAGGTTTAGGCATAATCTTTCCGGTCAGCTCTCCGTGAATAAAAATGGCAGGTAGAAAAGGAGGCTGACAGATTAATTTACTTATATTATCTTCTACATTTTACAATGTATTTTGATGATATTTTTCTGTTTAAATATACCAAAAATTTAATGGAGTGTATATTTTTGCCCTCTCT</genome_strand>
        <mrna_strand>GAGAACAACAACGATTAGGAATG........................................................................................................GCACGCTTATTTTTTCACAAGCCACGGTTTGGAATCCTTGACGAATGTACAAA.....................................................................................................TGCTACTAGTGTTGATGTTGAAGAACACCTGTATAGGCTTGCTAAGGATGCTGGCATTACTGTTGTTACATCCTCACAG...............................................................................................CGCCCTGCTTTAATACCTTTCCATTCTGTGGAATTACGGTTGATTGATGGTGAAGGCAAGTGGCAGCTGCTTTCAATTAAGATGGATGAGGAGGGGGAAGACGAACCAAATGAATACACACAACAATTGTGAGTACGATGATGTATTCCAATGTTGTGAAAACGTTCATAGAGCCAAAAATAATGAATGAATTATGAATGTAATAGTTTGCAGTTAGATTGAGGGTAGGAAACTATATAGTTAGGGTATACAAAAACTATTTTAAGTTGTTTCTTGTAATATTTCATATAGTTAACTGTGTATAGCGCCTAGTTCCCGTCGTTGTAAAAGGTTTAGGCATAATCTTTCCGGTCAGCTCTCCGTGAATAAAAATGGCAGGTAGAAAAGGAGGCTGACAGATTAATTTACTTATATTATCTTCTACATTTTACAATGTATTTTGATGATATTTTTCTGTTTAAATATACCAAAAATTTAATGGAGTGTATATTTTTGCCCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288286" ref_strand="-" ref_description="SGN-E288286 [cLES-16-J21]">
      <seq>aggcaagtggcagctgctttcaattaagatggatgaggagggggaagccgaaccaaatgaatacacccaccaattgtgagtacgatgatgtattccaatgttgtgaaaacgttcatagagccaaaaataatgaatcacttatgaatgtaatagtttgcagttagattgagggtaggaaactatatagttagggtatacaaaaactattttaagttgtttcttgtaatatttcatatagttaactgtgtatagcgcctagttcccgtcgttgtaaaaggtttaggcataatctttccggtcagctctccgtgaataaaaatggcaggtagaaaaggaggctgacagattaatttacttatattatcttctacattttacaatgtattttgatgatatttttctgtttaaatataccaaaaatttaatggagtgtatatttttgccctctctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="44160" stop="45216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44460" g_stop="44909" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="451" polyA_stop="480"/>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E288286" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288286" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44460" e_stop="44909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAAGTGGCAGCTGCGTTCAATTAAGATGGATGAGGAGGGGGAAGACGAACCAAATGAATACACACAACAATTGTGAGTACGATGATGTATTCCAATGTTGTGAAAACGTTCATAGAGCCAAAAATAATGAATGAATTATGAATGTAATAGTTTGCAGTTAGATTGAGGGTAGGAAACTATATAGTTAGGGTATACAAAAACTATTTTAAGTTGTTTCTTGTAATATTTCATATAGTTAACTGTGTATAGCGCCTAGTTCCCGTCGTTGTAAAAGGTTTAGGCATAATCTTTCCGGTCAGCTCTCCGTGAATAAAAATGGCAGGTAGAAAAGGAGGCTGACAGATTAATTTACTTATATTATCTTCTACATTTTACAATGTATTTTGATGATATTTTTCTGTTTAAATATACCAAAAATTTAATGGAGTGTATATTTTTGCCCTCTCT</genome_strand>
        <mrna_strand>AGGCAAGTGGCAGCTGCTTTCAATTAAGATGGATGAGGAGGGGGAAGCCGAACCAAATGAATACACCCACCAATTGTGAGTACGATGATGTATTCCAATGTTGTGAAAACGTTCATAGAGCCAAAAATAATGAATCACTTATGAATGTAATAGTTTGCAGTTAGATTGAGGGTAGGAAACTATATAGTTAGGGTATACAAAAACTATTTTAAGTTGTTTCTTGTAATATTTCATATAGTTAACTGTGTATAGCGCCTAGTTCCCGTCGTTGTAAAAGGTTTAGGCATAATCTTTCCGGTCAGCTCTCCGTGAATAAAAATGGCAGGTAGAAAAGGAGGCTGACAGATTAATTTACTTATATTATCTTCTACATTTTACAATGTATTTTGATGATATTTTTCTGTTTAAATATACCAAAAATTTAATGGAGTGTATATTTTTGCCCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338242" ref_strand="+" ref_description="SGN-E338242 [cTOE-13-M11]">
      <seq>taatattttctttcttttagaattttagtaagttcttttataacacgttatcagcacgagtctctagctaattgagagtgagttttagttttttctttaactcatgttttggttgatctcgatatgagaatcaaggtattatttgcataagatcaggtatgtattttctaaaatattttatgatttagaataaaatagtattcagtcactagcaattatcaggaaccgaagacatatactactattggttgaatatgacatgctatataaaacttattaaatggaagaaggtataaaattttaatagcatgagtttgaatgttattttgattgttttgaaagactcaaagggtgagtcgtgttgtacttcggtctattataccgttggtcaagggtaagacgattgattcaagtttcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="62875" stop="63861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63175" g_stop="63561" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="421" r_length="386" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E338242" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63175" e_stop="63561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTA-CTTTTTCTTTAACTCATGTTTTTGGTTGATCTCGTTATAAGAATCAAGGTATTATATGCATAAAATCAGGTATGTATTTTCTAGAATATTTTTATGATTTAGAATAAAATAGTATTCAGTCACTAACAATTATCAGGAATCGAAGACATATACTACTATTGGTTGAATATGACATGCTATACAAAATTTCTTAAATAGAAGAAGGTATAAAATTTTAATAGCATGAATTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGATGAGTCATGTTGTACTTCGATTTATTATACCGTTGGTTAAGGGTAAGACGATGAATTCAAGTTTCATCG</genome_strand>
        <mrna_strand>TTTTATAACACGTTATCAGCACGAGTCTCTAGCTAATTGAGAGTGAGTTTTAGTTTTTTCTTTAACTCATGTTTT-GGTTGATCTCGATATGAGAATCAAGGTATTATTTGCATAAGATCAGGTATGTATTTTCTAAAATA-TTTTATGATTTAGAATAAAATAGTATTCAGTCACTAGCAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATATAAAACTTATTAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGGTGAGTCGTGTTGTACTTCGGTCTATTATACCGTTGGTCAAGGGTAAGACGATTGATTCAAGTTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542836" ref_strand="+" ref_description="SGN-E542836 [TUS-64-F12](-)">
      <seq>aaaatgatgactaagaaaatcattatatttttgatgaaaatgtctgaaaattcatcatattgaatttgctccattccttgaaaagaatgtggtagcaacatgtgataactctgaaatccgcctgttgacttgctccattcaatcatatgaatgtggtagcagtgaatgattagtctgaaagatgacaaataattaatgatatgaataaaggcgtggaaggacagaattataatagtcatcattgtggtaatgataaaaggaataacaatatgagttcttcaaatagtccttcaaaatgtgaagacaatttttattatgaaaatggtatgaaaagtcattagacttgtgaatgttgtcaacccaataacttgacaagtttataaatcctctatcatgatataagaagataaagtgatggtacactttatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagtcatgacaatgtgcttataatgcaaatttataaagtacatatgaataattagtccaatctttgaagagaatgtgacttgtaatgagtatcgtgaatgctcgaccattctataagagaatgggtccagatgtgataaaatcattatgggttggatatatgtcacaactcacctctatagaaggtttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="63496" stop="64734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63796" g_stop="64434" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="676" r_length="647" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E542836" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63796" e_stop="64434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGAAAA-GTCTTGAAATTCGTTTTATTGAATTTGCTTCATTCCTTGAAAAGAATGTGGTAGCAACATGTAATAACTCTGATATCCGCCTGTTAACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATG-TTAGTCTGAAAGATGACAAATGATTAATGATATGAATAAGGGCGTGAAGGGACATAATTATAATAGTCATCATTGTGGTAATGATAAAAGG---AACATTATGAGTTCTTCAAATAGTCCTTCAAAATGTGAAGGCAATTTTTATTATCAAAATGGTATGAAAGGTCATTAGACTTGTGAATGTTGTCGACCCAATAATTTGACAAATTTATAAATCCTCTATCATG--AT-ACAAGATAAAGTGATGGTACACTTAATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTCCAATCCTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGATCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATAATTATGGGTTGGATACATGTCACTTCTCATCTCTACGGGAGATTTGAGAGGAAATAAA</genome_strand>
        <mrna_strand>TTTGATGAAAATGTCTGAAAATTCATCATATTGAATTTGCTCCATTCCTTGAAAAGAATGTGGTAGCAACATGTGATAACTCTGAAATCCGCCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTCTGAAAGATGACAAATAATTAATGATATGAATAAAGGCGTGGAAGGACAGAATTATAATAGTCATCATTGTGGTAATGATAAAAGGAATAACAATATGAGTTCTTCAAATAGTCCTTCAAAATGTGAAGACAATTTTTATTATGAAAATGGTATGAAAAGTCATTAGACTTGTGAATGTTGTCAACCCAATAACTTGACAAGTTTATAAATCCTCTATCATGATATAAGAAGATAAAGTGATGGTACACTTTATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATAAAGTACATATGAATAATTAGTCCAATCTTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAGGTTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273497" ref_strand="+" ref_description="SGN-E273497 [cLEN-3-J16]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaatttatatcattgagcgctacctcatatcaaagataccgtcgacggttatttgatatcgattccaacaagacataacttatcgagatctcttcaatttttttcattatttcaggtacctgaacctttttcaagattttatgaagtgttatgtcaatgtgctcctttatagcacttgcctcattatcatgaccatattgatcatttgctccttccttctttaaggaattttatatttggaatcaattggtctattacgctttcggcgtatcataaactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="66773" stop="65511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66473" g_stop="65811" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E273497" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66473" e_stop="65811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACATTCATTGTCTAGCTAGACATTAAAATTATTCATTTACATGCATTCAAGTTTT-CATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAATCGTATTTGATATCTTACAGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGA---T----------TATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTC-A--TTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAATTGTTATGTCAATGTGCTCTTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTCAAGGAATTTTATATTTGGAATTGATTGGTCTATTACGCTTCCGGCGTATCATAGACTCTG</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-A-T----TT-TTCA-TTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCAATTTTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCCTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTTAAGGAATTTTATATTTGGAATCAATTGGTCTATTACGCTTTCGGCGTATCATAAACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391540" ref_strand="+" ref_description="SGN-E391540 [TUS-16-I1]">
      <seq>acgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="65785" stop="67056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66079" g_stop="66756" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E391540" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66079" e_stop="66756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATAATCTTGAATTCAAATCTGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACTGTAAGATATCAAATACGATTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTTTAATGTCTAGCTAGACAATGAATGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAATATATTTGTCTAACAGTGCACATACACTGAAAATTTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGGC</genome_strand>
        <mrna_strand>ACGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205808" ref_strand="+" ref_description="SGN-E205808 [cLEC-20-M21]">
      <seq>cgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="65785" stop="66934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66080" g_stop="66634" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E205808" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66080" e_stop="66634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAATCTTGAATTCAAATCTGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACTGTAAGATATCAAATACGATTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTTTAATGTCTAGCTAGACAATGAATGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</genome_strand>
        <mrna_strand>CGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202657" ref_strand="+" ref_description="SGN-E202657 [cLEC-19-H1]">
      <seq>gatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttaaaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacgggttgcttcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgatttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="65785" stop="66837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66084" g_stop="66537" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E202657" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66084" e_stop="66537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTGAATTCAAATCTGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACTGTAAGATATCAAATACGATTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTTTAATGTCTAGCTAGACAATGAATGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</genome_strand>
        <mrna_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAAAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGGTTGCTTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGATTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273387" ref_strand="+" ref_description="SGN-E273387 [cLEN-3-J20]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="66773" stop="65778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66473" g_stop="66084" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E273387" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66473" e_stop="66084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACATTCATTGTCTAGCTAGACATTAAAATTATTCATTTACATGCATTCAAGTTTT-CATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAATCGTATTTGATATCTTACAGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATT</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-A-T----TT-TTCA-TTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAAAACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267707" ref_strand="+" ref_description="SGN-E267707 [cLEI-12-K2]">
      <seq>ttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="65828" stop="67010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66128" g_stop="66710" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E267707" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66128" e_stop="66710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACTGTAAGATATCAAATACGATTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAA-CTTGAATGCATGTAAATGAATAATTTTAATGTCTAGCTAGACAATGAATGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAATATATTTGTCTAACAGTGCACATACACTGAAAATTTTTGATGCAATTTTATGTGGA</genome_strand>
        <mrna_strand>TTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGT-AATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289962" ref_strand="+" ref_description="SGN-E289962 [cLET-9-B10]">
      <seq>ttgaaagaaacttatccaataaagcttcaagaattcttatatggattgaaatagtcaaggaagaaaaatggtacaaaagaatgaccctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgccttgacctacagattgataatttgacaaatgaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatatgaataaatcgcattcattgagtaccccaatgattatgagattacttgacataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatattattccagatatttgttttgcagtaaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="66186" stop="67194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66486" g_stop="66894" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E289962" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66486" e_stop="66894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAATATATTTGTCTAACAGTGCACATACACTGAAAATTTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGGCATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATTTACT</genome_strand>
        <mrna_strand>TTGAAAGAAACTTATCCAATAAAGCTTCAAGAATTCTTATATGGATTGAAATAGTCAAGGAAGAAAAATGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGCCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATATGAATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATTACTTGACATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTATTCCAGATATTTGTTTTGCAGTAAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208613" ref_strand="+" ref_description="SGN-E208613 [cLEC-39-E19]">
      <seq>aagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtcataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggcgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="66262" stop="67342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66562" g_stop="67042" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E208613" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66562" e_stop="67042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAATATATTTGTCTAACAGTGCACATACACTGAAAATTTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGGCATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCAGTTTCTCCCCGATAAAAGGACATTGAAATGGTGTTGAGCACATGATTGAATATCCTCGAAGGACCATAGTTATGTGTTTATTCTATCCCGAGGAATCCAAGACAAAATTGATTGATTACGCAGATGCAGAATATTTA</genome_strand>
        <mrna_strand>AAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTCATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGCGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746857" ref_strand="+" ref_description="SGN-E746857 [GI|47104425]">
      <seq>ttttgttttataagataaagcaaagacttcccattttcaaatttcagctaaaatggagagagcaacacctgtacggaagcctaacacctctgccgccgatctgctcacctggtctgaagttccgccggcgaacaactcagcttctgcctccggcaatgcatctcgctccggcgctcgttctcatcagccttctgatggaatcagtaaggttctgtttggaggtcaaattactgaagaggaagctgagagcttgaacaaacgtaaaccatgttcagggtacaaactgaaggagatgaatggcagcaaaatcttttctgctgatggtgaagatgatgcatctgaatcaggagctgttaatggtaacttcaacaacaggacatctgtccgcattgttcagcaagctgcaaatggaataagccagatatcattcagtactgaagaaaggatctctccaaagaaacctatcacacttacagaagtggcaaaacagagagagttgagcggaacactagaaagtgattcagatagcaatatgaagaagcagctttcagatgcaaagagcaaggaactcagtggaaatgacatatttggccctcccgcagaaattcctcctagatctttggctgctgcccgatccatagagtcaaaagaaagcaaagacatgggtgaacctgctccacgacttgtacgtacgtctgtcaaggtttctaatcctgctggtggtcaaagcaatattttgtttggtgatgaacctgttgtcaacacagtaaagaaaatacataaccagaagtttgcagagttgaccggcaatgacattttcaagggagatattcctcctggatctgcagaaaagccactgagcagagcaaagctgagagaaatgagtggaaatgatattttttctgatggaaaagttgaatccagagattattttggtggcgttcgtaaaccaccaggcggagaaagcagcatcgcgctggtttagataaatgtcatcagactgctgctatgtttgacctgtagtgttcctgcaacatttcacttctaatgtttcatgggttttagaattgagggttgtagatgatatgtgtttaaccatgttgtacggacaacttctaaactataatttacataaacttggaggatttgcctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="67984" stop="71760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68284" g_stop="68470" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68471" i_stop="68545" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68546" g_stop="68619" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="261" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68620" i_stop="70353" i_length="1734">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70354" g_stop="70489" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="397" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70490" i_stop="70612" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70613" g_stop="70927" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="712" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70928" i_stop="71014" i_length="87">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71015" g_stop="71469" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="1167" r_length="455" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E746857" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68284" e_stop="68470"/>
          <exon e_start="68546" e_stop="68619"/>
          <exon e_start="70354" e_stop="70489"/>
          <exon e_start="70613" e_stop="70927"/>
          <exon e_start="71015" e_stop="71469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTTTATAAGATAAAGCAAAGACTTCCCATTTTCAAATTTCAGCTAAAATGGAGAGAGCAACACCTGTACGGAAGCCTAACACCTCTGCCGCCGATCTGCTCACCTGGTCTGAAGTTCCGCCGGCGAACAACTCAGCTTCTGCCTCCGGCAATGCATCTCGCTCCGGCGCTCGTTCTCATCAGGTGAATTATATTGTGACTTGTGTTGTTTGCTTTTATGATTTGCTAGAGTTTAATTTATATGCTATTATATTGTAGCCTTCTGATGGAATCAGTAAGGTTCTGTTTGGAGGTCAAATTACTGAAGAGGAAGCTGAGAGCTTGAACAAACGGTATGTACTGATCTGAAAAGCGAAATGATTTTTTCATTTGTTTAATTTATCGTCACATTTTGCTTGGAATTTAATCTTTTTTTTTTATAAGTAGTGTGTTTTTCTAATATGTGATTTATCCTGATGCTTGTATTACAAAGTTCAGATCTTCCCCTGAGTTCTCCGAAATTTTCTATTTTGTTTCTGAAGCTTCTATAATTTCTTAGATCTAGTAATGCAATTTCTTTTTTGGTGTGTTTGGTAGAGAGGAAAATGTTTTCACTTGTTTGCTGGAGTTTGGTAAATACTGTCTAAAGAGCATTTATGTATAAAAGGAGGAAAGAAAAGATCTGAGCATATATACTATGACACTGGACCCTTGTCCCAACATAGACATGATCTAAACCCCACTCTGAACTGGACAACCAATCTCAGTCATGATCTGGGACCCGTTGTTGACTCGATAACTAACCCCGACCTAATTCAAATCGAGATTGGAGGCAGGATCCTGACCCCATCTGGGTCAAGGTTGCTCTTGACTTGGGATTCCAGGTTGGGGTGGGGTCTCGGGTATGGATCAAGAGTTGGGGTTGGATCCTGAGTGGGGTCAAGTGTTTGGTCTTAGGTTGAGGTCTTAAGTCTTTTTCGGGGTTGGGAGTCAAGTCTTGGGTTGAGGTCTTGAGTATAGGGAGTCGTGTCCTTGGTTGGGAGTTAGGTCTAGGTTGGAGACCGTTCTGAAAAATATTTTTCTAACTTTGTATAATTAGTCATTTTCCTATAATAGAAGGAAAGTGAATTCGTTTGGAAAACATTGACAAATTAAATTTTACACGCCCTTAACTTTCTTGTTATAGTCTGTTGCGTTTCCTTGTTGAGCTGCTCTGGGATTTGGATAGCACATCTAAAATCTATTGATGAGTATATCAATTAAAATGGTTTCACTAATAAGTGATGAGAGAAGCATTCTTTTCTATAGATCAATTTCATTTGATTCTGTTTAAGGTTTATAAAGAAACTGTGATTGACATCATTAAAGTGTTAAAATGGAAACATTTCTTAGTGAAAAGTGCACCTTAGACTTATTTTTGTTATAATCATATTGATTATCCTCTTCTTATTTTTTTATTGAGTTTCTTGAAGCCGGACTGTCATATTTATTATCACTCTCTTCCACATTCTAATTCCAAAACTAAAAATCAGACTTTTTTTCTGATATGTAAGAGTTACATGGCTGCTACTAATATTTTTGGTAGACTGGTAAAAATATGCACCTACTCTGCATTCTGCATATTAGATATCCCGATCTCCATGTCCTTTCTTTCGATTCTTTGCTTATCATGATTTAGTATTCAGAGACCTGTGGTGAGGTACTGTTGTGGAGTTCCGACCAATGGAAGTAATCCCATTAATTTAAGAAACTGAAAAGACATGCTATTTTCTGATATGGTCACCCGAAACATTGCAGCCATTCTAGAAAATTAGCTCTATGCTATATATATTCTTGCTTTTAGACGGGCGCAAATTTAGCTGATTTGAAATGTAGCATGCAAGTTAAGTGAAGCTTCTCTATCAAAAGACTCAGAAAGTTGAGAGGTTCCAATGTTTGGACATGTGGAATACATTTTTGGGGTTTACTTTTCATTGATATCGAGAGGTTCCAATGTATGGAAAAGAAAAGAAAGAGTCCAGTGACCTTAATGGTTTTGAAGTAAATGTTATCTGGTCCTTATTCTGCTTGAAACATGCTTTCTCCAGTAAACCATGTTCAGGGTACAAACTGAAGGAGATGAATGGCAGCAAAATCTTTTCTGCTGATGGTGAAGATGATGCATCTGAATCAGGAGCTGTTAATGGTAACTTCAACAACAGGACATCTGTCCGCATTGTTCAGGTACTATTTAAATCATTATACGGTAAAATTATGTTTTACAGGACTTGCTGTGTGAGCATGCTACAAAGTCAGGAAACTAGTAACTGGCAACTTCACCGTCTAATGATTTGTAATTCATTGCAGCAAGCTGCAAATGGAATAAGCCAGATATCATTCAGTACTGAAGAAAGGATCTCTCCAAAGAAACCTATCACACTTACAGAAGTGGCAAAACAGAGAGAGTTGAGCGGAACACTAGAAAGTGATTCAGATAGCAATATGAAGAAGCAGCTTTCAGATGCAAAGAGCAAGGAACTCAGTGGAAATGACATATTTGGCCCTCCCGCAGAAATTCCTCCTAGATCTTTGGCTGCTGCCCGATCCATAGAGTCAAAAGAAAGCAAAGACATGGGTGAACCTGCTCCACGACTTGTACGTACGTCTGTCAAGGTTTCTAATGTGAGTTGTGTACTAGACATGTTTTCTTATTCTCATTTCTGTCTACAGACTTGTTATGTGTTCTCATGTGGCTGTCCTACTTTGTAGCCTGCTGGTGGTCAAAGCAATATTTTGTTTGGTGATGAACCTGTTGTCAACACAGTAAAGAAAATACATAACCAGAAGTTTGCAGAGTTGACCGGCAATGACATTTTCAAGGGAGATATTCCTCCTGGATCTGCAGAAAAGCCACTGAGCAGAGCAAAGCTGAGAGAAATGAGTGGAAATGATATTTTTTCTGATGGAAAAGTTGAATCCAGAGATTATTTTGGTGGCGTTCGTAAACCACCAGGCGGAGAAAGCAGCATCGCGCTGGTTTAGATAAATGTCATCAGACTGCTGCTATGTTTGACCTGTAGTGTTCCTGCAACATTTCACTTCTAATGTTTCATGGGTTTTAGAATTGAGGGTTGTAGATGATATGTGTTTAACCATGTTGTACGGACAACTTCTAAACTATAATTTACATAAACTTGGAGGATTTGCCTAACATAGTGTTTTTA</genome_strand>
        <mrna_strand>TTTTGTTTTATAAGATAAAGCAAAGACTTCCCATTTTCAAATTTCAGCTAAAATGGAGAGAGCAACACCTGTACGGAAGCCTAACACCTCTGCCGCCGATCTGCTCACCTGGTCTGAAGTTCCGCCGGCGAACAACTCAGCTTCTGCCTCCGGCAATGCATCTCGCTCCGGCGCTCGTTCTCATCAG...........................................................................CCTTCTGATGGAATCAGTAAGGTTCTGTTTGGAGGTCAAATTACTGAAGAGGAAGCTGAGAGCTTGAACAAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACCATGTTCAGGGTACAAACTGAAGGAGATGAATGGCAGCAAAATCTTTTCTGCTGATGGTGAAGATGATGCATCTGAATCAGGAGCTGTTAATGGTAACTTCAACAACAGGACATCTGTCCGCATTGTTCAG...........................................................................................................................CAAGCTGCAAATGGAATAAGCCAGATATCATTCAGTACTGAAGAAAGGATCTCTCCAAAGAAACCTATCACACTTACAGAAGTGGCAAAACAGAGAGAGTTGAGCGGAACACTAGAAAGTGATTCAGATAGCAATATGAAGAAGCAGCTTTCAGATGCAAAGAGCAAGGAACTCAGTGGAAATGACATATTTGGCCCTCCCGCAGAAATTCCTCCTAGATCTTTGGCTGCTGCCCGATCCATAGAGTCAAAAGAAAGCAAAGACATGGGTGAACCTGCTCCACGACTTGTACGTACGTCTGTCAAGGTTTCTAAT.......................................................................................CCTGCTGGTGGTCAAAGCAATATTTTGTTTGGTGATGAACCTGTTGTCAACACAGTAAAGAAAATACATAACCAGAAGTTTGCAGAGTTGACCGGCAATGACATTTTCAAGGGAGATATTCCTCCTGGATCTGCAGAAAAGCCACTGAGCAGAGCAAAGCTGAGAGAAATGAGTGGAAATGATATTTTTTCTGATGGAAAAGTTGAATCCAGAGATTATTTTGGTGGCGTTCGTAAACCACCAGGCGGAGAAAGCAGCATCGCGCTGGTTTAGATAAATGTCATCAGACTGCTGCTATGTTTGACCTGTAGTGTTCCTGCAACATTTCACTTCTAATGTTTCATGGGTTTTAGAATTGAGGGTTGTAGATGATATGTGTTTAACCATGTTGTACGGACAACTTCTAAACTATAATTTACATAAACTTGGAGGATTTGCCTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304630" ref_strand="+" ref_description="SGN-E304630 [cLEX-11-A3]">
      <seq>tttgttttataagataaagcaaagacttcccattttcaaatttcagctaaaatggagagagcaacacctgtacggaagcctaacacctctgccgccgatctgctcacctggtctgaagttccgccggcgaacaactcagcttctgcctccggcaatgcatctcgctccggcgctcgttctcatcagccttctgatggaatcagtaaggttctgtttggaggtcaaattactgaagaggaagctgagagcttgaacaaacgtaaaccatgttcagggtacaaactgaaggagatgaatggcagcaaaatcttttctgctgatggtgaagatgatgcatctgaatcaggagctgttaatggtaacttcaacaacaggacatctgtccgcattgttcagcaagctgcaaatggaataagccagatatcattcagtactgaagaaaggatctctccaaagaaacctatcacacttacagaagtggcaaaacagagagagttgagcggaacactagaaagtgattcagatagcaatatgaagaagcagctttcagatgcaaagagcaaggaactcagtggaaatgacatatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="67985" stop="71105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68285" g_stop="68470" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68471" i_stop="68545" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68546" g_stop="68619" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="260" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68620" i_stop="70353" i_length="1734">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70354" g_stop="70489" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="396" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70490" i_stop="70612" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70613" g_stop="70805" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="589" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E304630" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68285" e_stop="68470"/>
          <exon e_start="68546" e_stop="68619"/>
          <exon e_start="70354" e_stop="70489"/>
          <exon e_start="70613" e_stop="70805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTTATAAGATAAAGCAAAGACTTCCCATTTTCAAATTTCAGCTAAAATGGAGAGAGCAACACCTGTACGGAAGCCTAACACCTCTGCCGCCGATCTGCTCACCTGGTCTGAAGTTCCGCCGGCGAACAACTCAGCTTCTGCCTCCGGCAATGCATCTCGCTCCGGCGCTCGTTCTCATCAGGTGAATTATATTGTGACTTGTGTTGTTTGCTTTTATGATTTGCTAGAGTTTAATTTATATGCTATTATATTGTAGCCTTCTGATGGAATCAGTAAGGTTCTGTTTGGAGGTCAAATTACTGAAGAGGAAGCTGAGAGCTTGAACAAACGGTATGTACTGATCTGAAAAGCGAAATGATTTTTTCATTTGTTTAATTTATCGTCACATTTTGCTTGGAATTTAATCTTTTTTTTTTATAAGTAGTGTGTTTTTCTAATATGTGATTTATCCTGATGCTTGTATTACAAAGTTCAGATCTTCCCCTGAGTTCTCCGAAATTTTCTATTTTGTTTCTGAAGCTTCTATAATTTCTTAGATCTAGTAATGCAATTTCTTTTTTGGTGTGTTTGGTAGAGAGGAAAATGTTTTCACTTGTTTGCTGGAGTTTGGTAAATACTGTCTAAAGAGCATTTATGTATAAAAGGAGGAAAGAAAAGATCTGAGCATATATACTATGACACTGGACCCTTGTCCCAACATAGACATGATCTAAACCCCACTCTGAACTGGACAACCAATCTCAGTCATGATCTGGGACCCGTTGTTGACTCGATAACTAACCCCGACCTAATTCAAATCGAGATTGGAGGCAGGATCCTGACCCCATCTGGGTCAAGGTTGCTCTTGACTTGGGATTCCAGGTTGGGGTGGGGTCTCGGGTATGGATCAAGAGTTGGGGTTGGATCCTGAGTGGGGTCAAGTGTTTGGTCTTAGGTTGAGGTCTTAAGTCTTTTTCGGGGTTGGGAGTCAAGTCTTGGGTTGAGGTCTTGAGTATAGGGAGTCGTGTCCTTGGTTGGGAGTTAGGTCTAGGTTGGAGACCGTTCTGAAAAATATTTTTCTAACTTTGTATAATTAGTCATTTTCCTATAATAGAAGGAAAGTGAATTCGTTTGGAAAACATTGACAAATTAAATTTTACACGCCCTTAACTTTCTTGTTATAGTCTGTTGCGTTTCCTTGTTGAGCTGCTCTGGGATTTGGATAGCACATCTAAAATCTATTGATGAGTATATCAATTAAAATGGTTTCACTAATAAGTGATGAGAGAAGCATTCTTTTCTATAGATCAATTTCATTTGATTCTGTTTAAGGTTTATAAAGAAACTGTGATTGACATCATTAAAGTGTTAAAATGGAAACATTTCTTAGTGAAAAGTGCACCTTAGACTTATTTTTGTTATAATCATATTGATTATCCTCTTCTTATTTTTTTATTGAGTTTCTTGAAGCCGGACTGTCATATTTATTATCACTCTCTTCCACATTCTAATTCCAAAACTAAAAATCAGACTTTTTTTCTGATATGTAAGAGTTACATGGCTGCTACTAATATTTTTGGTAGACTGGTAAAAATATGCACCTACTCTGCATTCTGCATATTAGATATCCCGATCTCCATGTCCTTTCTTTCGATTCTTTGCTTATCATGATTTAGTATTCAGAGACCTGTGGTGAGGTACTGTTGTGGAGTTCCGACCAATGGAAGTAATCCCATTAATTTAAGAAACTGAAAAGACATGCTATTTTCTGATATGGTCACCCGAAACATTGCAGCCATTCTAGAAAATTAGCTCTATGCTATATATATTCTTGCTTTTAGACGGGCGCAAATTTAGCTGATTTGAAATGTAGCATGCAAGTTAAGTGAAGCTTCTCTATCAAAAGACTCAGAAAGTTGAGAGGTTCCAATGTTTGGACATGTGGAATACATTTTTGGGGTTTACTTTTCATTGATATCGAGAGGTTCCAATGTATGGAAAAGAAAAGAAAGAGTCCAGTGACCTTAATGGTTTTGAAGTAAATGTTATCTGGTCCTTATTCTGCTTGAAACATGCTTTCTCCAGTAAACCATGTTCAGGGTACAAACTGAAGGAGATGAATGGCAGCAAAATCTTTTCTGCTGATGGTGAAGATGATGCATCTGAATCAGGAGCTGTTAATGGTAACTTCAACAACAGGACATCTGTCCGCATTGTTCAGGTACTATTTAAATCATTATACGGTAAAATTATGTTTTACAGGACTTGCTGTGTGAGCATGCTACAAAGTCAGGAAACTAGTAACTGGCAACTTCACCGTCTAATGATTTGTAATTCATTGCAGCAAGCTGCAAATGGAATAAGCCAGATATCATTCAGTACTGAAGAAAGGATCTCTCCAAAGAAACCTATCACACTTACAGAAGTGGCAAAACAGAGAGAGTTGAGCGGAACACTAGAAAGTGATTCAGATAGCAATATGAAGAAGCAGCTTTCAGATGCAAAGAGCAAGGAACTCAGTGGAAATGACATATTTG</genome_strand>
        <mrna_strand>TTTGTTTTATAAGATAAAGCAAAGACTTCCCATTTTCAAATTTCAGCTAAAATGGAGAGAGCAACACCTGTACGGAAGCCTAACACCTCTGCCGCCGATCTGCTCACCTGGTCTGAAGTTCCGCCGGCGAACAACTCAGCTTCTGCCTCCGGCAATGCATCTCGCTCCGGCGCTCGTTCTCATCAG...........................................................................CCTTCTGATGGAATCAGTAAGGTTCTGTTTGGAGGTCAAATTACTGAAGAGGAAGCTGAGAGCTTGAACAAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACCATGTTCAGGGTACAAACTGAAGGAGATGAATGGCAGCAAAATCTTTTCTGCTGATGGTGAAGATGATGCATCTGAATCAGGAGCTGTTAATGGTAACTTCAACAACAGGACATCTGTCCGCATTGTTCAG...........................................................................................................................CAAGCTGCAAATGGAATAAGCCAGATATCATTCAGTACTGAAGAAAGGATCTCTCCAAAGAAACCTATCACACTTACAGAAGTGGCAAAACAGAGAGAGTTGAGCGGAACACTAGAAAGTGATTCAGATAGCAATATGAAGAAGCAGCTTTCAGATGCAAAGAGCAAGGAACTCAGTGGAAATGACATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700628" ref_strand="+" ref_description="SGN-E700628 [FA13CG04]">
      <seq>cacatacttcccattttcaaatttcagctaaaatggagagagcaacacctgtacggaagcctaacacctctgccgccgatctgctcacctggtctgaagttccgccggcgaacaactcagcttctgcctccggcaatgcatctcgctccggcgctcgttctcatcagccttctgatggaatcagtaaggttctgtttggaggtcaaattactgaagaggaagctgagagcttgaacaaacgtaaaccatgttcagggtacaaactgaaggagatgaatggcagcaaaatcttttctgctgatggtgaagatgatgcatctgaatcaggagctgttaatggtaacttcaacaacaggacatctgtccgcattgttcagcaagctgcaaatggaataagccagatatcattcagtactgaagaaaggatctctccaaagaaacctatcacacttacagaagtggcaaaacagagagagttgagcggaacactagaaagtgattcagatagcaatatgaagaagcagctttcagatgcaaagagcaaggaactcagtggaaatgacatatttggccctcccgcagaaattcctcctagatctttggctgctgcccgatccatagagtcaaaagaaagcaaagacatgggtgaacctgctccacgacttgtacgtacgtctgtcaaggtttctaatcctgctggtggtcaaagcaatattttgtttggtgatgaacctgttgtcaacacagtaaagaaaatacataaccagaagtttgcagagttgaccggcaatgacattttcaagggagatattcctcctggatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="68004" stop="71448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68304" g_stop="68470" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68471" i_stop="68545" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68546" g_stop="68619" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="241" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68620" i_stop="70353" i_length="1734">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70354" g_stop="70489" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="377" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70490" i_stop="70612" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70613" g_stop="70927" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="692" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70928" i_stop="71014" i_length="87">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71015" g_stop="71148" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="826" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E700628" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68304" e_stop="68470"/>
          <exon e_start="68546" e_stop="68619"/>
          <exon e_start="70354" e_stop="70489"/>
          <exon e_start="70613" e_stop="70927"/>
          <exon e_start="71015" e_stop="71148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGACTTCCCATTTTCAAATTTCAGCTAAAATGGAGAGAGCAACACCTGTACGGAAGCCTAACACCTCTGCCGCCGATCTGCTCACCTGGTCTGAAGTTCCGCCGGCGAACAACTCAGCTTCTGCCTCCGGCAATGCATCTCGCTCCGGCGCTCGTTCTCATCAGGTGAATTATATTGTGACTTGTGTTGTTTGCTTTTATGATTTGCTAGAGTTTAATTTATATGCTATTATATTGTAGCCTTCTGATGGAATCAGTAAGGTTCTGTTTGGAGGTCAAATTACTGAAGAGGAAGCTGAGAGCTTGAACAAACGGTATGTACTGATCTGAAAAGCGAAATGATTTTTTCATTTGTTTAATTTATCGTCACATTTTGCTTGGAATTTAATCTTTTTTTTTTATAAGTAGTGTGTTTTTCTAATATGTGATTTATCCTGATGCTTGTATTACAAAGTTCAGATCTTCCCCTGAGTTCTCCGAAATTTTCTATTTTGTTTCTGAAGCTTCTATAATTTCTTAGATCTAGTAATGCAATTTCTTTTTTGGTGTGTTTGGTAGAGAGGAAAATGTTTTCACTTGTTTGCTGGAGTTTGGTAAATACTGTCTAAAGAGCATTTATGTATAAAAGGAGGAAAGAAAAGATCTGAGCATATATACTATGACACTGGACCCTTGTCCCAACATAGACATGATCTAAACCCCACTCTGAACTGGACAACCAATCTCAGTCATGATCTGGGACCCGTTGTTGACTCGATAACTAACCCCGACCTAATTCAAATCGAGATTGGAGGCAGGATCCTGACCCCATCTGGGTCAAGGTTGCTCTTGACTTGGGATTCCAGGTTGGGGTGGGGTCTCGGGTATGGATCAAGAGTTGGGGTTGGATCCTGAGTGGGGTCAAGTGTTTGGTCTTAGGTTGAGGTCTTAAGTCTTTTTCGGGGTTGGGAGTCAAGTCTTGGGTTGAGGTCTTGAGTATAGGGAGTCGTGTCCTTGGTTGGGAGTTAGGTCTAGGTTGGAGACCGTTCTGAAAAATATTTTTCTAACTTTGTATAATTAGTCATTTTCCTATAATAGAAGGAAAGTGAATTCGTTTGGAAAACATTGACAAATTAAATTTTACACGCCCTTAACTTTCTTGTTATAGTCTGTTGCGTTTCCTTGTTGAGCTGCTCTGGGATTTGGATAGCACATCTAAAATCTATTGATGAGTATATCAATTAAAATGGTTTCACTAATAAGTGATGAGAGAAGCATTCTTTTCTATAGATCAATTTCATTTGATTCTGTTTAAGGTTTATAAAGAAACTGTGATTGACATCATTAAAGTGTTAAAATGGAAACATTTCTTAGTGAAAAGTGCACCTTAGACTTATTTTTGTTATAATCATATTGATTATCCTCTTCTTATTTTTTTATTGAGTTTCTTGAAGCCGGACTGTCATATTTATTATCACTCTCTTCCACATTCTAATTCCAAAACTAAAAATCAGACTTTTTTTCTGATATGTAAGAGTTACATGGCTGCTACTAATATTTTTGGTAGACTGGTAAAAATATGCACCTACTCTGCATTCTGCATATTAGATATCCCGATCTCCATGTCCTTTCTTTCGATTCTTTGCTTATCATGATTTAGTATTCAGAGACCTGTGGTGAGGTACTGTTGTGGAGTTCCGACCAATGGAAGTAATCCCATTAATTTAAGAAACTGAAAAGACATGCTATTTTCTGATATGGTCACCCGAAACATTGCAGCCATTCTAGAAAATTAGCTCTATGCTATATATATTCTTGCTTTTAGACGGGCGCAAATTTAGCTGATTTGAAATGTAGCATGCAAGTTAAGTGAAGCTTCTCTATCAAAAGACTCAGAAAGTTGAGAGGTTCCAATGTTTGGACATGTGGAATACATTTTTGGGGTTTACTTTTCATTGATATCGAGAGGTTCCAATGTATGGAAAAGAAAAGAAAGAGTCCAGTGACCTTAATGGTTTTGAAGTAAATGTTATCTGGTCCTTATTCTGCTTGAAACATGCTTTCTCCAGTAAACCATGTTCAGGGTACAAACTGAAGGAGATGAATGGCAGCAAAATCTTTTCTGCTGATGGTGAAGATGATGCATCTGAATCAGGAGCTGTTAATGGTAACTTCAACAACAGGACATCTGTCCGCATTGTTCAGGTACTATTTAAATCATTATACGGTAAAATTATGTTTTACAGGACTTGCTGTGTGAGCATGCTACAAAGTCAGGAAACTAGTAACTGGCAACTTCACCGTCTAATGATTTGTAATTCATTGCAGCAAGCTGCAAATGGAATAAGCCAGATATCATTCAGTACTGAAGAAAGGATCTCTCCAAAGAAACCTATCACACTTACAGAAGTGGCAAAACAGAGAGAGTTGAGCGGAACACTAGAAAGTGATTCAGATAGCAATATGAAGAAGCAGCTTTCAGATGCAAAGAGCAAGGAACTCAGTGGAAATGACATATTTGGCCCTCCCGCAGAAATTCCTCCTAGATCTTTGGCTGCTGCCCGATCCATAGAGTCAAAAGAAAGCAAAGACATGGGTGAACCTGCTCCACGACTTGTACGTACGTCTGTCAAGGTTTCTAATGTGAGTTGTGTACTAGACATGTTTTCTTATTCTCATTTCTGTCTACAGACTTGTTATGTGTTCTCATGTGGCTGTCCTACTTTGTAGCCTGCTGGTGGTCAAAGCAATATTTTGTTTGGTGATGAACCTGTTGTCAACACAGTAAAGAAAATACATAACCAGAAGTTTGCAGAGTTGACCGGCAATGACATTTTCAAGGGAGATATTCCTCCTGGATCTGC</genome_strand>
        <mrna_strand>CACATACTTCCCATTTTCAAATTTCAGCTAAAATGGAGAGAGCAACACCTGTACGGAAGCCTAACACCTCTGCCGCCGATCTGCTCACCTGGTCTGAAGTTCCGCCGGCGAACAACTCAGCTTCTGCCTCCGGCAATGCATCTCGCTCCGGCGCTCGTTCTCATCAG...........................................................................CCTTCTGATGGAATCAGTAAGGTTCTGTTTGGAGGTCAAATTACTGAAGAGGAAGCTGAGAGCTTGAACAAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACCATGTTCAGGGTACAAACTGAAGGAGATGAATGGCAGCAAAATCTTTTCTGCTGATGGTGAAGATGATGCATCTGAATCAGGAGCTGTTAATGGTAACTTCAACAACAGGACATCTGTCCGCATTGTTCAG...........................................................................................................................CAAGCTGCAAATGGAATAAGCCAGATATCATTCAGTACTGAAGAAAGGATCTCTCCAAAGAAACCTATCACACTTACAGAAGTGGCAAAACAGAGAGAGTTGAGCGGAACACTAGAAAGTGATTCAGATAGCAATATGAAGAAGCAGCTTTCAGATGCAAAGAGCAAGGAACTCAGTGGAAATGACATATTTGGCCCTCCCGCAGAAATTCCTCCTAGATCTTTGGCTGCTGCCCGATCCATAGAGTCAAAAGAAAGCAAAGACATGGGTGAACCTGCTCCACGACTTGTACGTACGTCTGTCAAGGTTTCTAAT.......................................................................................CCTGCTGGTGGTCAAAGCAATATTTTGTTTGGTGATGAACCTGTTGTCAACACAGTAAAGAAAATACATAACCAGAAGTTTGCAGAGTTGACCGGCAATGACATTTTCAAGGGAGATATTCCTCCTGGATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689959" ref_strand="+" ref_description="SGN-E689959 [LH_Ea02E05]">
      <seq>cggagagcaacacctgtacggaagcctaacacctctgccgccgatctgctcacctggtctgaagttccgccggcgaacaactcagcttctgcctccggcaatgcatctcgctccggcgctcgttctcatcagccttctgatggaatcagtaaggttctgtttggaggtcaaattactgaagaggaagctgagagcttgaacaaacggaaaccatgttcagggtacaaactgaaggagatgaatggcagcaaaatcttttctgctgatggcgaagatgatgcatctgaatcaggagctgttaatggtaacttcaacaacaggacatctgtccgcattgttcagcaagctgcaaatggaataagccagatatcattcagtactgaagaaaggatctctccaaagaaacctatcacacttacagaagtggcaaaacagagagagttgagtggaacactagaaagtgattcagatagcaacatgaagaagcagctttcagatgcaaagagcaaggaactcagtggaaatgatatatttggccctcccgcagaaattcctcctagatctttggctgctgcccgatccatagagtcaaaagaaagcaaagacatgggtgaacctgctccacgacttgtacgtacgtctgtcaaggtttctaatcctgctggtggtcaaagcaatattttgtttggtgatgaacctgttgtcaacacagtaaagaaaatacataaccagaagtttgcagagttgaccggcaacgacattttcaagggagatattcctcctggatctgcagaaaagccactgagcagagcaaagctgagagaaatgagtggaaatgatattttttctgatggaaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="68041" stop="71519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68339" g_stop="68470" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68471" i_stop="68545" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68546" g_stop="68619" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="206" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68620" i_stop="70353" i_length="1734">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70354" g_stop="70489" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="342" r_length="136" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70490" i_stop="70612" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70613" g_stop="70927" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="657" r_length="315" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70928" i_stop="71014" i_length="87">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71015" g_stop="71219" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="862" r_length="205" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E689959" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68339" e_stop="68470"/>
          <exon e_start="68546" e_stop="68619"/>
          <exon e_start="70354" e_stop="70489"/>
          <exon e_start="70613" e_stop="70927"/>
          <exon e_start="71015" e_stop="71219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGCAACACCTGTACGGAAGCCTAACACCTCTGCCGCCGATCTGCTCACCTGGTCTGAAGTTCCGCCGGCGAACAACTCAGCTTCTGCCTCCGGCAATGCATCTCGCTCCGGCGCTCGTTCTCATCAGGTGAATTATATTGTGACTTGTGTTGTTTGCTTTTATGATTTGCTAGAGTTTAATTTATATGCTATTATATTGTAGCCTTCTGATGGAATCAGTAAGGTTCTGTTTGGAGGTCAAATTACTGAAGAGGAAGCTGAGAGCTTGAACAAACGGTATGTACTGATCTGAAAAGCGAAATGATTTTTTCATTTGTTTAATTTATCGTCACATTTTGCTTGGAATTTAATCTTTTTTTTTTATAAGTAGTGTGTTTTTCTAATATGTGATTTATCCTGATGCTTGTATTACAAAGTTCAGATCTTCCCCTGAGTTCTCCGAAATTTTCTATTTTGTTTCTGAAGCTTCTATAATTTCTTAGATCTAGTAATGCAATTTCTTTTTTGGTGTGTTTGGTAGAGAGGAAAATGTTTTCACTTGTTTGCTGGAGTTTGGTAAATACTGTCTAAAGAGCATTTATGTATAAAAGGAGGAAAGAAAAGATCTGAGCATATATACTATGACACTGGACCCTTGTCCCAACATAGACATGATCTAAACCCCACTCTGAACTGGACAACCAATCTCAGTCATGATCTGGGACCCGTTGTTGACTCGATAACTAACCCCGACCTAATTCAAATCGAGATTGGAGGCAGGATCCTGACCCCATCTGGGTCAAGGTTGCTCTTGACTTGGGATTCCAGGTTGGGGTGGGGTCTCGGGTATGGATCAAGAGTTGGGGTTGGATCCTGAGTGGGGTCAAGTGTTTGGTCTTAGGTTGAGGTCTTAAGTCTTTTTCGGGGTTGGGAGTCAAGTCTTGGGTTGAGGTCTTGAGTATAGGGAGTCGTGTCCTTGGTTGGGAGTTAGGTCTAGGTTGGAGACCGTTCTGAAAAATATTTTTCTAACTTTGTATAATTAGTCATTTTCCTATAATAGAAGGAAAGTGAATTCGTTTGGAAAACATTGACAAATTAAATTTTACACGCCCTTAACTTTCTTGTTATAGTCTGTTGCGTTTCCTTGTTGAGCTGCTCTGGGATTTGGATAGCACATCTAAAATCTATTGATGAGTATATCAATTAAAATGGTTTCACTAATAAGTGATGAGAGAAGCATTCTTTTCTATAGATCAATTTCATTTGATTCTGTTTAAGGTTTATAAAGAAACTGTGATTGACATCATTAAAGTGTTAAAATGGAAACATTTCTTAGTGAAAAGTGCACCTTAGACTTATTTTTGTTATAATCATATTGATTATCCTCTTCTTATTTTTTTATTGAGTTTCTTGAAGCCGGACTGTCATATTTATTATCACTCTCTTCCACATTCTAATTCCAAAACTAAAAATCAGACTTTTTTTCTGATATGTAAGAGTTACATGGCTGCTACTAATATTTTTGGTAGACTGGTAAAAATATGCACCTACTCTGCATTCTGCATATTAGATATCCCGATCTCCATGTCCTTTCTTTCGATTCTTTGCTTATCATGATTTAGTATTCAGAGACCTGTGGTGAGGTACTGTTGTGGAGTTCCGACCAATGGAAGTAATCCCATTAATTTAAGAAACTGAAAAGACATGCTATTTTCTGATATGGTCACCCGAAACATTGCAGCCATTCTAGAAAATTAGCTCTATGCTATATATATTCTTGCTTTTAGACGGGCGCAAATTTAGCTGATTTGAAATGTAGCATGCAAGTTAAGTGAAGCTTCTCTATCAAAAGACTCAGAAAGTTGAGAGGTTCCAATGTTTGGACATGTGGAATACATTTTTGGGGTTTACTTTTCATTGATATCGAGAGGTTCCAATGTATGGAAAAGAAAAGAAAGAGTCCAGTGACCTTAATGGTTTTGAAGTAAATGTTATCTGGTCCTTATTCTGCTTGAAACATGCTTTCTCCAGTAAACCATGTTCAGGGTACAAACTGAAGGAGATGAATGGCAGCAAAATCTTTTCTGCTGATGGTGAAGATGATGCATCTGAATCAGGAGCTGTTAATGGTAACTTCAACAACAGGACATCTGTCCGCATTGTTCAGGTACTATTTAAATCATTATACGGTAAAATTATGTTTTACAGGACTTGCTGTGTGAGCATGCTACAAAGTCAGGAAACTAGTAACTGGCAACTTCACCGTCTAATGATTTGTAATTCATTGCAGCAAGCTGCAAATGGAATAAGCCAGATATCATTCAGTACTGAAGAAAGGATCTCTCCAAAGAAACCTATCACACTTACAGAAGTGGCAAAACAGAGAGAGTTGAGCGGAACACTAGAAAGTGATTCAGATAGCAATATGAAGAAGCAGCTTTCAGATGCAAAGAGCAAGGAACTCAGTGGAAATGACATATTTGGCCCTCCCGCAGAAATTCCTCCTAGATCTTTGGCTGCTGCCCGATCCATAGAGTCAAAAGAAAGCAAAGACATGGGTGAACCTGCTCCACGACTTGTACGTACGTCTGTCAAGGTTTCTAATGTGAGTTGTGTACTAGACATGTTTTCTTATTCTCATTTCTGTCTACAGACTTGTTATGTGTTCTCATGTGGCTGTCCTACTTTGTAGCCTGCTGGTGGTCAAAGCAATATTTTGTTTGGTGATGAACCTGTTGTCAACACAGTAAAGAAAATACATAACCAGAAGTTTGCAGAGTTGACCGGCAATGACATTTTCAAGGGAGATATTCCTCCTGGATCTGCAGAAAAGCCACTGAGCAGAGCAAAGCTGAGAGAAATGAGTGGAAATGATATTTTTTCTGATGGAAAAGTTG</genome_strand>
        <mrna_strand>CGGAGAGCAACACCTGTACGGAAGCCTAACACCTCTGCCGCCGATCTGCTCACCTGGTCTGAAGTTCCGCCGGCGAACAACTCAGCTTCTGCCTCCGGCAATGCATCTCGCTCCGGCGCTCGTTCTCATCAG...........................................................................CCTTCTGATGGAATCAGTAAGGTTCTGTTTGGAGGTCAAATTACTGAAGAGGAAGCTGAGAGCTTGAACAAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACCATGTTCAGGGTACAAACTGAAGGAGATGAATGGCAGCAAAATCTTTTCTGCTGATGGCGAAGATGATGCATCTGAATCAGGAGCTGTTAATGGTAACTTCAACAACAGGACATCTGTCCGCATTGTTCAG...........................................................................................................................CAAGCTGCAAATGGAATAAGCCAGATATCATTCAGTACTGAAGAAAGGATCTCTCCAAAGAAACCTATCACACTTACAGAAGTGGCAAAACAGAGAGAGTTGAGTGGAACACTAGAAAGTGATTCAGATAGCAACATGAAGAAGCAGCTTTCAGATGCAAAGAGCAAGGAACTCAGTGGAAATGATATATTTGGCCCTCCCGCAGAAATTCCTCCTAGATCTTTGGCTGCTGCCCGATCCATAGAGTCAAAAGAAAGCAAAGACATGGGTGAACCTGCTCCACGACTTGTACGTACGTCTGTCAAGGTTTCTAAT.......................................................................................CCTGCTGGTGGTCAAAGCAATATTTTGTTTGGTGATGAACCTGTTGTCAACACAGTAAAGAAAATACATAACCAGAAGTTTGCAGAGTTGACCGGCAACGACATTTTCAAGGGAGATATTCCTCCTGGATCTGCAGAAAAGCCACTGAGCAGAGCAAAGCTGAGAGAAATGAGTGGAAATGATATTTTTTCTGATGGAAAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324699" ref_strand="+" ref_description="SGN-E324699 [cTOC-8-E12]">
      <seq>gcaacacctgtacggaagcctaacacctctgccgccgatctgctcacctggtctgaagttccgccggcgaacaactcagcttctgcctccggcaatgcatctcgctccggcgctcgttctcatcagccttctgatggaatcagtaaggttctgtttggaggtcaaattactgaagaggaagctgagagcttgaacaaacgtaaaccatgttcagggtacaaactgaaggagatgaatggcagcaaaatcttttctgctgatggtgaagatgatgcatctgaatcaggagctgttaatggtaacttcaacaacaggacatctgtccgcattgttcagcaagctgcaaatggaataagccagatatcattcagtactgaagaaaggatctctccaaagaaacctatcacacttacagaagtggcaaaacagagagagttgagcggaacactagaaagtgattcagatagcaatatgaagaagcagctttcagatgcaaagagcaaggaactcagtggaaatgacatatttggccctcccgcagaaattcctcctagatctttggctgctgcccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="68045" stop="71150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68345" g_stop="68470" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68471" i_stop="68545" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68546" g_stop="68619" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="200" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68620" i_stop="70353" i_length="1734">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70354" g_stop="70489" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="336" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70490" i_stop="70612" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70613" g_stop="70850" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="574" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E324699" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68345" e_stop="68470"/>
          <exon e_start="68546" e_stop="68619"/>
          <exon e_start="70354" e_stop="70489"/>
          <exon e_start="70613" e_stop="70850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACACCTGTACGGAAGCCTAACACCTCTGCCGCCGATCTGCTCACCTGGTCTGAAGTTCCGCCGGCGAACAACTCAGCTTCTGCCTCCGGCAATGCATCTCGCTCCGGCGCTCGTTCTCATCAGGTGAATTATATTGTGACTTGTGTTGTTTGCTTTTATGATTTGCTAGAGTTTAATTTATATGCTATTATATTGTAGCCTTCTGATGGAATCAGTAAGGTTCTGTTTGGAGGTCAAATTACTGAAGAGGAAGCTGAGAGCTTGAACAAACGGTATGTACTGATCTGAAAAGCGAAATGATTTTTTCATTTGTTTAATTTATCGTCACATTTTGCTTGGAATTTAATCTTTTTTTTTTATAAGTAGTGTGTTTTTCTAATATGTGATTTATCCTGATGCTTGTATTACAAAGTTCAGATCTTCCCCTGAGTTCTCCGAAATTTTCTATTTTGTTTCTGAAGCTTCTATAATTTCTTAGATCTAGTAATGCAATTTCTTTTTTGGTGTGTTTGGTAGAGAGGAAAATGTTTTCACTTGTTTGCTGGAGTTTGGTAAATACTGTCTAAAGAGCATTTATGTATAAAAGGAGGAAAGAAAAGATCTGAGCATATATACTATGACACTGGACCCTTGTCCCAACATAGACATGATCTAAACCCCACTCTGAACTGGACAACCAATCTCAGTCATGATCTGGGACCCGTTGTTGACTCGATAACTAACCCCGACCTAATTCAAATCGAGATTGGAGGCAGGATCCTGACCCCATCTGGGTCAAGGTTGCTCTTGACTTGGGATTCCAGGTTGGGGTGGGGTCTCGGGTATGGATCAAGAGTTGGGGTTGGATCCTGAGTGGGGTCAAGTGTTTGGTCTTAGGTTGAGGTCTTAAGTCTTTTTCGGGGTTGGGAGTCAAGTCTTGGGTTGAGGTCTTGAGTATAGGGAGTCGTGTCCTTGGTTGGGAGTTAGGTCTAGGTTGGAGACCGTTCTGAAAAATATTTTTCTAACTTTGTATAATTAGTCATTTTCCTATAATAGAAGGAAAGTGAATTCGTTTGGAAAACATTGACAAATTAAATTTTACACGCCCTTAACTTTCTTGTTATAGTCTGTTGCGTTTCCTTGTTGAGCTGCTCTGGGATTTGGATAGCACATCTAAAATCTATTGATGAGTATATCAATTAAAATGGTTTCACTAATAAGTGATGAGAGAAGCATTCTTTTCTATAGATCAATTTCATTTGATTCTGTTTAAGGTTTATAAAGAAACTGTGATTGACATCATTAAAGTGTTAAAATGGAAACATTTCTTAGTGAAAAGTGCACCTTAGACTTATTTTTGTTATAATCATATTGATTATCCTCTTCTTATTTTTTTATTGAGTTTCTTGAAGCCGGACTGTCATATTTATTATCACTCTCTTCCACATTCTAATTCCAAAACTAAAAATCAGACTTTTTTTCTGATATGTAAGAGTTACATGGCTGCTACTAATATTTTTGGTAGACTGGTAAAAATATGCACCTACTCTGCATTCTGCATATTAGATATCCCGATCTCCATGTCCTTTCTTTCGATTCTTTGCTTATCATGATTTAGTATTCAGAGACCTGTGGTGAGGTACTGTTGTGGAGTTCCGACCAATGGAAGTAATCCCATTAATTTAAGAAACTGAAAAGACATGCTATTTTCTGATATGGTCACCCGAAACATTGCAGCCATTCTAGAAAATTAGCTCTATGCTATATATATTCTTGCTTTTAGACGGGCGCAAATTTAGCTGATTTGAAATGTAGCATGCAAGTTAAGTGAAGCTTCTCTATCAAAAGACTCAGAAAGTTGAGAGGTTCCAATGTTTGGACATGTGGAATACATTTTTGGGGTTTACTTTTCATTGATATCGAGAGGTTCCAATGTATGGAAAAGAAAAGAAAGAGTCCAGTGACCTTAATGGTTTTGAAGTAAATGTTATCTGGTCCTTATTCTGCTTGAAACATGCTTTCTCCAGTAAACCATGTTCAGGGTACAAACTGAAGGAGATGAATGGCAGCAAAATCTTTTCTGCTGATGGTGAAGATGATGCATCTGAATCAGGAGCTGTTAATGGTAACTTCAACAACAGGACATCTGTCCGCATTGTTCAGGTACTATTTAAATCATTATACGGTAAAATTATGTTTTACAGGACTTGCTGTGTGAGCATGCTACAAAGTCAGGAAACTAGTAACTGGCAACTTCACCGTCTAATGATTTGTAATTCATTGCAGCAAGCTGCAAATGGAATAAGCCAGATATCATTCAGTACTGAAGAAAGGATCTCTCCAAAGAAACCTATCACACTTACAGAAGTGGCAAAACAGAGAGAGTTGAGCGGAACACTAGAAAGTGATTCAGATAGCAATATGAAGAAGCAGCTTTCAGATGCAAAGAGCAAGGAACTCAGTGGAAATGACATATTTGGCCCTCCCGCAGAAATTCCTCCTAGATCTTTGGCTGCTGCCCGAT</genome_strand>
        <mrna_strand>GCAACACCTGTACGGAAGCCTAACACCTCTGCCGCCGATCTGCTCACCTGGTCTGAAGTTCCGCCGGCGAACAACTCAGCTTCTGCCTCCGGCAATGCATCTCGCTCCGGCGCTCGTTCTCATCAG...........................................................................CCTTCTGATGGAATCAGTAAGGTTCTGTTTGGAGGTCAAATTACTGAAGAGGAAGCTGAGAGCTTGAACAAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACCATGTTCAGGGTACAAACTGAAGGAGATGAATGGCAGCAAAATCTTTTCTGCTGATGGTGAAGATGATGCATCTGAATCAGGAGCTGTTAATGGTAACTTCAACAACAGGACATCTGTCCGCATTGTTCAG...........................................................................................................................CAAGCTGCAAATGGAATAAGCCAGATATCATTCAGTACTGAAGAAAGGATCTCTCCAAAGAAACCTATCACACTTACAGAAGTGGCAAAACAGAGAGAGTTGAGCGGAACACTAGAAAGTGATTCAGATAGCAATATGAAGAAGCAGCTTTCAGATGCAAAGAGCAAGGAACTCAGTGGAAATGACATATTTGGCCCTCCCGCAGAAATTCCTCCTAGATCTTTGGCTGCTGCCCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338305" ref_strand="+" ref_description="SGN-E338305 [cTOE-13-H7]">
      <seq>gcagcaaaatcttttctgctgatggtgaagatgatgcatctgaatcaggagctgttaatggtaacttcaacaacaggacatctgtccgcattgttcagcaagctgcaaatggaataagccagatatcattcagtactgaagaaaggatctctccaaagaaacctatcacacttacagaagtggcaaaacagagagagttgagcggaacactagaaagtgattcagatagcaatatgaagaagcagctttcagatgcaaagagcaaggaactcagtggaaatgacatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="70092" stop="71103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70392" g_stop="70489" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70490" i_stop="70612" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70613" g_stop="70803" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="289" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E338305" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70392" e_stop="70489"/>
          <exon e_start="70613" e_stop="70803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCAAAATCTTTTCTGCTGATGGTGAAGATGATGCATCTGAATCAGGAGCTGTTAATGGTAACTTCAACAACAGGACATCTGTCCGCATTGTTCAGGTACTATTTAAATCATTATACGGTAAAATTATGTTTTACAGGACTTGCTGTGTGAGCATGCTACAAAGTCAGGAAACTAGTAACTGGCAACTTCACCGTCTAATGATTTGTAATTCATTGCAGCAAGCTGCAAATGGAATAAGCCAGATATCATTCAGTACTGAAGAAAGGATCTCTCCAAAGAAACCTATCACACTTACAGAAGTGGCAAAACAGAGAGAGTTGAGCGGAACACTAGAAAGTGATTCAGATAGCAATATGAAGAAGCAGCTTTCAGATGCAAAGAGCAAGGAACTCAGTGGAAATGACATATT</genome_strand>
        <mrna_strand>GCAGCAAAATCTTTTCTGCTGATGGTGAAGATGATGCATCTGAATCAGGAGCTGTTAATGGTAACTTCAACAACAGGACATCTGTCCGCATTGTTCAG...........................................................................................................................CAAGCTGCAAATGGAATAAGCCAGATATCATTCAGTACTGAAGAAAGGATCTCTCCAAAGAAACCTATCACACTTACAGAAGTGGCAAAACAGAGAGAGTTGAGCGGAACACTAGAAAGTGATTCAGATAGCAATATGAAGAAGCAGCTTTCAGATGCAAAGAGCAAGGAACTCAGTGGAAATGACATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693799" ref_strand="+" ref_description="SGN-E693799 [LH_Ea02E05](-)">
      <seq>gatggcgaagatgatgcatctgaatcaggagctgttaatggtaacttcaacaacaggacatctgtccgcattgttcagcaagctgcaaatggaataagccagatatcattcagtactgaagaaaggatctctccaaagaaacctatcacacttacagaagtggcaaaacagagagagttgagtggaacactagaaagtgattcagatagcaacatgaagaagcagctttcagatgcaaagagcaaggaactcagtggaaatgatatatttggccctcccgcagaaattcctcctagatctttggctgctgcccgatccatagagtcaaaagaaagcaaagacatgggtgaacctgctccacgacttgtacgtacgtctgtcaaggtttctaatcctgctggtggtcaaagcaatattttgtttggtgatgaacctgttgtcaacacagtaaagaaaatacataaccagaagtttgcagagttgaccggcaacgacattttcaagggagatattcctcctggatctgcagaaaagccactgagcagagcaaagctgagagaaatgagtggaaatgatattttttctgatggaaaagttgaatccagagattattttggtggcgttcgtaaaccaccaggcggagaaagcagcatcgcgctggtttagataaatgccatcagactgctgctatgtttgacctgtagtgttcctgcaacatttcacttctaatgtttcatgggttttagaattgagggttgtagatgatatgtgtttaaccatgttgtacggacaacttctaaactacaatttacatcaactggaggaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="70112" stop="71747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70412" g_stop="70489" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70490" i_stop="70612" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70613" g_stop="70927" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="393" r_length="315" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70928" i_stop="71014" i_length="87">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71015" g_stop="71446" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="824" r_length="431" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="825" polyA_stop="842"/>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E693799" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70412" e_stop="70489"/>
          <exon e_start="70613" e_stop="70927"/>
          <exon e_start="71015" e_stop="71446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTGAAGATGATGCATCTGAATCAGGAGCTGTTAATGGTAACTTCAACAACAGGACATCTGTCCGCATTGTTCAGGTACTATTTAAATCATTATACGGTAAAATTATGTTTTACAGGACTTGCTGTGTGAGCATGCTACAAAGTCAGGAAACTAGTAACTGGCAACTTCACCGTCTAATGATTTGTAATTCATTGCAGCAAGCTGCAAATGGAATAAGCCAGATATCATTCAGTACTGAAGAAAGGATCTCTCCAAAGAAACCTATCACACTTACAGAAGTGGCAAAACAGAGAGAGTTGAGCGGAACACTAGAAAGTGATTCAGATAGCAATATGAAGAAGCAGCTTTCAGATGCAAAGAGCAAGGAACTCAGTGGAAATGACATATTTGGCCCTCCCGCAGAAATTCCTCCTAGATCTTTGGCTGCTGCCCGATCCATAGAGTCAAAAGAAAGCAAAGACATGGGTGAACCTGCTCCACGACTTGTACGTACGTCTGTCAAGGTTTCTAATGTGAGTTGTGTACTAGACATGTTTTCTTATTCTCATTTCTGTCTACAGACTTGTTATGTGTTCTCATGTGGCTGTCCTACTTTGTAGCCTGCTGGTGGTCAAAGCAATATTTTGTTTGGTGATGAACCTGTTGTCAACACAGTAAAGAAAATACATAACCAGAAGTTTGCAGAGTTGACCGGCAATGACATTTTCAAGGGAGATATTCCTCCTGGATCTGCAGAAAAGCCACTGAGCAGAGCAAAGCTGAGAGAAATGAGTGGAAATGATATTTTTTCTGATGGAAAAGTTGAATCCAGAGATTATTTTGGTGGCGTTCGTAAACCACCAGGCGGAGAAAGCAGCATCGCGCTGGTTTAGATAAATGTCATCAGACTGCTGCTATGTTTGACCTGTAGTGTTCCTGCAACATTTCACTTCTAATGTTTCATGGGTTTTAGAATTGAGGGTTGTAGATGATATGTGTTTAACCATGTTGTACGGACAACTTCTAAACTATAATTTACATAAACTTGGAGG</genome_strand>
        <mrna_strand>GATGGCGAAGATGATGCATCTGAATCAGGAGCTGTTAATGGTAACTTCAACAACAGGACATCTGTCCGCATTGTTCAG...........................................................................................................................CAAGCTGCAAATGGAATAAGCCAGATATCATTCAGTACTGAAGAAAGGATCTCTCCAAAGAAACCTATCACACTTACAGAAGTGGCAAAACAGAGAGAGTTGAGTGGAACACTAGAAAGTGATTCAGATAGCAACATGAAGAAGCAGCTTTCAGATGCAAAGAGCAAGGAACTCAGTGGAAATGATATATTTGGCCCTCCCGCAGAAATTCCTCCTAGATCTTTGGCTGCTGCCCGATCCATAGAGTCAAAAGAAAGCAAAGACATGGGTGAACCTGCTCCACGACTTGTACGTACGTCTGTCAAGGTTTCTAAT.......................................................................................CCTGCTGGTGGTCAAAGCAATATTTTGTTTGGTGATGAACCTGTTGTCAACACAGTAAAGAAAATACATAACCAGAAGTTTGCAGAGTTGACCGGCAACGACATTTTCAAGGGAGATATTCCTCCTGGATCTGCAGAAAAGCCACTGAGCAGAGCAAAGCTGAGAGAAATGAGTGGAAATGATATTTTTTCTGATGGAAAAGTTGAATCCAGAGATTATTTTGGTGGCGTTCGTAAACCACCAGGCGGAGAAAGCAGCATCGCGCTGGTTTAGATAAATGCCATCAGACTGCTGCTATGTTTGACCTGTAGTGTTCCTGCAACATTTCACTTCTAATGTTTCATGGGTTTTAGAATTGAGGGTTGTAGATGATATGTGTTTAACCATGTTGTACGGACAACTTCTAAACTACAATTTACATCAAC-TGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540879" ref_strand="+" ref_description="SGN-E540879 [TUS-61-G3]">
      <seq>tcctgctggtggtcaaagcaatattttgtttggtgatgaacctgttgtcaacacagtaaagaaaatacataaccagaagtttgcagagttgaccggcaatgacattttcaagggagatattcctcctggatctgcagaaaagccactgagcagagcaaagctgagagaaatgagtggaaatgatattttttctgatggaaaagttgaatccagagattattttggtggcgttcgtaaaccaccaggcggagaaagcagcatcgcgctggtttagataaatgtcatcagactgctgctatgtttgacctgtagtgttcctgcaacatttcacttctaatgtttcatgggttttagaattgagggttgtagatgatatgtgtttaaccatgttgtacggacaacttctaaactataatttacataaacttggaggatttgcctaanaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="70715" stop="71760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70927" g_stop="70927" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70928" i_stop="71014" i_length="87">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71015" g_stop="71472" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="459" r_length="458" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E540879" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70927" e_stop="70927"/>
          <exon e_start="71015" e_stop="71472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAGTTGTGTACTAGACATGTTTTCTTATTCTCATTTCTGTCTACAGACTTGTTATGTGTTCTCATGTGGCTGTCCTACTTTGTAGCCTGCTGGTGGTCAAAGCAATATTTTGTTTGGTGATGAACCTGTTGTCAACACAGTAAAGAAAATACATAACCAGAAGTTTGCAGAGTTGACCGGCAATGACATTTTCAAGGGAGATATTCCTCCTGGATCTGCAGAAAAGCCACTGAGCAGAGCAAAGCTGAGAGAAATGAGTGGAAATGATATTTTTTCTGATGGAAAAGTTGAATCCAGAGATTATTTTGGTGGCGTTCGTAAACCACCAGGCGGAGAAAGCAGCATCGCGCTGGTTTAGATAAATGTCATCAGACTGCTGCTATGTTTGACCTGTAGTGTTCCTGCAACATTTCACTTCTAATGTTTCATGGGTTTTAGAATTGAGGGTTGTAGATGATATGTGTTTAACCATGTTGTACGGACAACTTCTAAACTATAATTTACATAAACTTGGAGGATTTGCCTAACATAGTGTTTTTAAGA</genome_strand>
        <mrna_strand>T.......................................................................................CCTGCTGGTGGTCAAAGCAATATTTTGTTTGGTGATGAACCTGTTGTCAACACAGTAAAGAAAATACATAACCAGAAGTTTGCAGAGTTGACCGGCAATGACATTTTCAAGGGAGATATTCCTCCTGGATCTGCAGAAAAGCCACTGAGCAGAGCAAAGCTGAGAGAAATGAGTGGAAATGATATTTTTTCTGATGGAAAAGTTGAATCCAGAGATTATTTTGGTGGCGTTCGTAAACCACCAGGCGGAGAAAGCAGCATCGCGCTGGTTTAGATAAATGTCATCAGACTGCTGCTATGTTTGACCTGTAGTGTTCCTGCAACATTTCACTTCTAATGTTTCATGGGTTTTAGAATTGAGGGTTGTAGATGATATGTGTTTAACCATGTTGTACGGACAACTTCTAAACTATAATTTACATAAACTTGGAGGATTTGCCTAANAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548457" ref_strand="+" ref_description="SGN-E548457 [TUS-61-G3](-)">
      <seq>tcctgctggtggtcaaagcaatattttgtttggtgatgaacctgttgtcaacacagtaaagaaaatacataaccagaagtttgcagagttgaccggcaatgacattttcaagggagatattcctcctggatctgcagaaaagccactgagcagagcaaagctgagagaaatgagtggaaatgatattttttctgatggaaaagttgaatccagagattattttggtggcgttcgtaaaccaccaggcggagaaagcagcatcgcgctggtttagataaatgtcatcagactgctgctatgtttgacctgtagtgttcctgcaacatttcacttctaatgtttcatgggttttagaattgagggttgtagatgatatgtgtttaaccatgttgtacggacaacttctaaactataatttacataaacttggaggatttgcctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="70715" stop="71760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70927" g_stop="70927" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70928" i_stop="71014" i_length="87">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71015" g_stop="71460" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="447" r_length="446" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="463"/>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E548457" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70927" e_stop="70927"/>
          <exon e_start="71015" e_stop="71460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAGTTGTGTACTAGACATGTTTTCTTATTCTCATTTCTGTCTACAGACTTGTTATGTGTTCTCATGTGGCTGTCCTACTTTGTAGCCTGCTGGTGGTCAAAGCAATATTTTGTTTGGTGATGAACCTGTTGTCAACACAGTAAAGAAAATACATAACCAGAAGTTTGCAGAGTTGACCGGCAATGACATTTTCAAGGGAGATATTCCTCCTGGATCTGCAGAAAAGCCACTGAGCAGAGCAAAGCTGAGAGAAATGAGTGGAAATGATATTTTTTCTGATGGAAAAGTTGAATCCAGAGATTATTTTGGTGGCGTTCGTAAACCACCAGGCGGAGAAAGCAGCATCGCGCTGGTTTAGATAAATGTCATCAGACTGCTGCTATGTTTGACCTGTAGTGTTCCTGCAACATTTCACTTCTAATGTTTCATGGGTTTTAGAATTGAGGGTTGTAGATGATATGTGTTTAACCATGTTGTACGGACAACTTCTAAACTATAATTTACATAAACTTGGAGGATTTGCCTAACATA</genome_strand>
        <mrna_strand>T.......................................................................................CCTGCTGGTGGTCAAAGCAATATTTTGTTTGGTGATGAACCTGTTGTCAACACAGTAAAGAAAATACATAACCAGAAGTTTGCAGAGTTGACCGGCAATGACATTTTCAAGGGAGATATTCCTCCTGGATCTGCAGAAAAGCCACTGAGCAGAGCAAAGCTGAGAGAAATGAGTGGAAATGATATTTTTTCTGATGGAAAAGTTGAATCCAGAGATTATTTTGGTGGCGTTCGTAAACCACCAGGCGGAGAAAGCAGCATCGCGCTGGTTTAGATAAATGTCATCAGACTGCTGCTATGTTTGACCTGTAGTGTTCCTGCAACATTTCACTTCTAATGTTTCATGGGTTTTAGAATTGAGGGTTGTAGATGATATGTGTTTAACCATGTTGTACGGACAACTTCTAAACTATAATTTACATAAACTTGGAGGATTTGCCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290651" ref_strand="+" ref_description="SGN-E290651 [cLET-10-C21]">
      <seq>cctgctggtggtcaaagcaatattttgtttggtgatgaacctgttgtcaacacagtaaagaaaatacataaccagaagtttgcagagttgaccggcaatgacattttcaagggagatattcctcctggatctgcagaaaagccactgagcagagcaaagctgagagaaatgagtggaaatgatattttttctgatggaaaagttgaatccagagattattttggtggcgttcgtaaaccaccaggcggagaaagcagcatcgcgctggtttagataaatgtcatcagactgctgctatgtttgacctgtagtgttcctgcaacatttcacttctaatgtttcatgggttttagaattgagggttgtagatgatatgtgtttaaccatgttgtacggacaacttctaaactataatttacataaacttggaggatttgcctcagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="70715" stop="71760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71015" g_stop="71463" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E290651" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71015" e_stop="71463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGCTGGTGGTCAAAGCAATATTTTGTTTGGTGATGAACCTGTTGTCAACACAGTAAAGAAAATACATAACCAGAAGTTTGCAGAGTTGACCGGCAATGACATTTTCAAGGGAGATATTCCTCCTGGATCTGCAGAAAAGCCACTGAGCAGAGCAAAGCTGAGAGAAATGAGTGGAAATGATATTTTTTCTGATGGAAAAGTTGAATCCAGAGATTATTTTGGTGGCGTTCGTAAACCACCAGGCGGAGAAAGCAGCATCGCGCTGGTTTAGATAAATGTCATCAGACTGCTGCTATGTTTGACCTGTAGTGTTCCTGCAACATTTCACTTCTAATGTTTCATGGGTTTTAGAATTGAGGGTTGTAGATGATATGTGTTTAACCATGTTGTACGGACAACTTCTAAACTATAATTTACATAAACTTGGAGGATTTGCCTAACATAGTG</genome_strand>
        <mrna_strand>CCTGCTGGTGGTCAAAGCAATATTTTGTTTGGTGATGAACCTGTTGTCAACACAGTAAAGAAAATACATAACCAGAAGTTTGCAGAGTTGACCGGCAATGACATTTTCAAGGGAGATATTCCTCCTGGATCTGCAGAAAAGCCACTGAGCAGAGCAAAGCTGAGAGAAATGAGTGGAAATGATATTTTTTCTGATGGAAAAGTTGAATCCAGAGATTATTTTGGTGGCGTTCGTAAACCACCAGGCGGAGAAAGCAGCATCGCGCTGGTTTAGATAAATGTCATCAGACTGCTGCTATGTTTGACCTGTAGTGTTCCTGCAACATTTCACTTCTAATGTTTCATGGGTTTTAGAATTGAGGGTTGTAGATGATATGTGTTTAACCATGTTGTACGGACAACTTCTAAACTATAATTTACATAAACTTGGAGGATTTGCCTCAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344353" ref_strand="+" ref_description="SGN-E344353 [cTOF-16-D2]">
      <seq>agcatcgcgctggtttagataaatgtcatcagactgctgctatgtttgacctgtagtgttcctgcaacatttcacttctaatgtttcatgggttttagaattgagggttgtagatgatatgtgtttaaccatgttgtacggacaacttctaaactataatttacataaacttggaggatttgcctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="70970" stop="71760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71270" g_stop="71467" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E344353" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71270" e_stop="71467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCGCGCTGGTTTAGATAAATGTCATCAGACTGCTGCTATGTTTGACCTGTAGTGTTCCTGCAACATTTCACTTCTAATGTTTCATGGGTTTTAGAATTGAGGGTTGTAGATGATATGTGTTTAACCATGTTGTACGGACAACTTCTAAACTATAATTTACATAAACTTGGAGGATTTGCCTAACATAGTGTTTT</genome_strand>
        <mrna_strand>AGCATCGCGCTGGTTTAGATAAATGTCATCAGACTGCTGCTATGTTTGACCTGTAGTGTTCCTGCAACATTTCACTTCTAATGTTTCATGGGTTTTAGAATTGAGGGTTGTAGATGATATGTGTTTAACCATGTTGTACGGACAACTTCTAAACTATAATTTACATAAACTTGGAGGATTTGCCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311278" ref_strand="+" ref_description="SGN-E311278 [cLEZ-16-F16]">
      <seq>gagaaagttcttcgattggctatcaagaagctgggtacagacgaatgggatcttactagagttgttgccactcgggctgaagttgacatggagcgtatcaaagaagagtaccataggaggaacagtgttacattggaccgtgcaattgctggagacacttcaggagactatgaaaaaatgcttctggctctgattgggcacggagatgcttgaattacatgtgctgaaaccttaagataataaaaaaaactctacttattttctgaagtttgaatttgcttttatgatgtatggtgtgtactctcagagtttggttctgtgtttatatgaactaaaaacactcgggagttgagttgtgttttgttttcgccttcacttttcatttcggacttctactggttttgcctgctaaataagcatagcttcaactttggcttggaaaaaaaaaaaaaaaagaaaaaaagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="72375" stop="47414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72075" g_stop="71638" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71637" i_stop="71522" i_length="116">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.523" a_score="0.44"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71521" g_stop="71481" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="479" r_length="41" r_score="0.439"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E311278" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72075" e_stop="71638"/>
          <exon e_start="71521" e_stop="71481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTCATTTCGGACTTCTACTGGTTTTGCCTGCTAAATAAGCATAGCTTCAACTTTGGCTTGAACGGATCTTGTTTCTTTATAACTCAGAAATAGATTATGTATCTTGGTTCGTATCTCATTTAGTACCTCCTAATTGGATTGTGACGCGTTGCCGTATCATTTATCCACCTAAACAGGACCATTTTCGCCCATATACCACACTAGTACAAACATAAAA</genome_strand>
        <mrna_strand>GAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTCATTTCGGACTTCTACTGGTTTTGCCTGCTAAATAAGCATAGCTTCAACTTTGGCTTG....................................................................................................................GAAAAAAAAAAAAAAAAGAAAAAAAGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747606" ref_strand="+" ref_description="SGN-E747606 [GI|3378203]">
      <seq>atgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgccagacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattggggtatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctccatacaagaaatcacttgaagaagatgttgcttatcatacagtgggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaagggaagcaaatatctgcatgagaagatctctgacaaggcttaccatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactaccatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactcagagcagcaatagaatgcttgaaacccagagaacactttgagaaagttcttcgattggctatcaagaagctgggtacagacgaatgggatcttactagagttgttgccactcgggctgaagttgacatggagcgtatcaaagaagagtaccataggaggaacagtgttacattggaccgtgcaattgctggagacacttcaggagactatgaaaaaatgcttctggctctgattgggcacggagatgcttgaattacatgtgctgaaaccttaagataataaaaaactctacttattttctgaactttcatttgcttttatgatctatggtgtgtactctcagagtttggttctgtgtttatatgaactaaaaacactcgggagttgagttgtgttttgttttcgccttcacttttcatttcggacttctactggttttgcctgctaaataagcatagcttcaactttggcttgaacggatcttgtttctttataactcagaaatagattatgtatcttggttcgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75438" stop="71285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75138" g_stop="75063" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="222" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="441" r_length="219" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72248" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="654" r_length="213" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72159" g_stop="71586" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="1222" r_length="568" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1223" polyA_stop="1242"/>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E747606" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>1228</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75138" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72248"/>
          <exon e_start="72159" e_stop="71586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAA-GGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTCATTTCGGACTTCTACTGGTTTTGCCTGCTAAATAAGCATAGCTTCAACTTTGGCTTGAACGGATCTTGTTTCTTTATAACTCAGAAATAGATTATGTATCTTGGTTCGT</genome_strand>
        <mrna_strand>ATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCCAGACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGGTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCCATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAGTGGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGGAAGCAAATAT-CTGCATGAGAAGATCTCTGACAAGGCTTACCATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACCATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTG-AAA-CCCAGAG-AACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAAT--AAAAAACTCTACTTATTTTCTGAACTTT-CATTTGCTTTTATGATCTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTCATTTCGGACTTCTACTGGTTTTGCCTGCTAAATAAGCATAGCTTCAACTTTGGCTTGAACGGATCTTGTTTCTTTATAACTCAGAAATAGATTATGTATCTTGGTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746892" ref_strand="+" ref_description="SGN-E746892 [GI|47104390]">
      <seq>gcataaaagttatgttacgttacaaaaataataaaatcgtgtatcccaatgacttttgcgatggcaaaaaatgtctgaatccactttttatgttcccacgtatattcttgagattgtacatatactatagttttgactcataaataattcaagaacacacagcacattctcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactcagagcagcaatagaatgcttgaaaaccccagagaaacactttgagaaagttcttcgattggctatcaagaagctgggtacagacgaatgggatcttactagagttgttgccactcgggctgaagttgacatggagcgtatcaaagaagagtaccataggaggaacagtgttacattggaccgtgcaattgctggagacacttcaggagactatgaaaaaatgcttctggctctgattgggcacggagatgcttgaattacatgtgctgaaaccttaagataataaaaaaaactctacttattttctgaagtttgaatttgcttttatgatgtatggtgtgtactctcagagtttggttctgtgtttatatgaactaaaaacactcgggagttgagttgtgttttgttttcgccttcacttttcatttcggacttctactggttttgcctgctaaataagcatagcttcaactttggcttgaacggatcttgtttctttataactcagaaatagattatgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75624" stop="71297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75325" g_stop="75063" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="409" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="628" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72248" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="841" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72159" g_stop="71598" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="842" r_stop="1403" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1404" polyA_stop="1420"/>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E746892" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1403</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75325" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72248"/>
          <exon e_start="72159" e_stop="71598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATAAAAGTTATGTTACGTTACAAAAATAATAAAATCGTGTATCCCAATGACTTTTGCGATGGCAAAAAATGTCTGAATCCACTTTTTATGTTCCCACGTATATTCTTGAGATTGTACATATACTATAGTTTTGACTCATAAATAATTCAAGAACACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTCATTTCGGACTTCTACTGGTTTTGCCTGCTAAATAAGCATAGCTTCAACTTTGGCTTGAACGGATCTTGTTTCTTTATAACTCAGAAATAGATTATGT</genome_strand>
        <mrna_strand>GCATAAAAGTTATGTTACGTTACAAAAATAATAAAATCGTGTATCCCAATGACTTTTGCGATGGCAAAAAATGTCTGAATCCACTTTTTATGTTCCCACGTATATTCTTGAGATTGTACATATACTATAGTTTTGACTCATAAATAATTCAAGAACACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTCATTTCGGACTTCTACTGGTTTTGCCTGCTAAATAAGCATAGCTTCAACTTTGGCTTGAACGGATCTTGTTTCTTTATAACTCAGAAATAGATTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543098" ref_strand="+" ref_description="SGN-E543098 [TUS-64-L21](-)">
      <seq>gtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactcagagcagcaatagaatgcttgaaaaccccagagaaacactttgagaaagttcttcgattggctatcaagaagctgggtacagacgaatgggatcttactagagttgttgccactcgggctgaagttgacatggagcgtatcaaagaagagtaccataggaggaacagtgttacattggaccgtgcaattgctggagacacttcaggagactatgaaaaaatgcttctggctctgattgggcacggagatgcttgaattacatgtgctgaaaccttaagataataaaaaaaactctacttattttctgaagtttgaatttgcttttatgatgtatggtgtgtactctcagagtttggttctgtgtttatatgaactaaaaacactcgggagttgagttgtgttttgttttcgccttcacttttcatttcggacttctactggttttgcctgctaaataagcatagcttcaactttggcttgaacggatcttgtttctttataactcagaaatagattatgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="72766" stop="71297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72466" g_stop="72248" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72159" g_stop="71598" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="780" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="781" polyA_stop="792"/>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E543098" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72466" e_stop="72248"/>
          <exon e_start="72159" e_stop="71598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTCATTTCGGACTTCTACTGGTTTTGCCTGCTAAATAAGCATAGCTTCAACTTTGGCTTGAACGGATCTTGTTTCTTTATAACTCAGAAATAGATTATGT</genome_strand>
        <mrna_strand>GTA-AGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTCATTTCGGACTTCTACTGGTTTTGCCTGCTAAATAAGCATAGCTTCAACTTTGGCTTGAACGGATCTTGTTTCTTTATAACTCAGAAATAGATTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357915" ref_strand="+" ref_description="SGN-E357915 [cTOS-24-P9]">
      <seq>ttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactcagagcagcaatagaatgcttgaaaaccccagagaaacactttgagaaagttcttcgattggctatcaagaagctgggtacagacgaatgggatcttactagagttgttgccactcgggctgaagttgacatggagcgtatcaaagaagagtaccataggaggaacagtgttacattggaccgtgcaattgctggagacacttcaggagactatgaaaaaatgcttctggctctgattgggcacggagatgcttgaattacatgtgctgaaaccttaagataataaaaaaaactctacttattttctgaagtttgaatttgcttttatgatgtatggtgtgtactctcagagtttggttctgtgtttatatgaactaaaaacactcgggagttgagttgtggtttgttttcgccttcacttttcatttcggacttctactggttttgcctgctaataagcatagcttcaactttggcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="72747" stop="71337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72447" g_stop="72248" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72159" g_stop="71637" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="722" r_length="522" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E357915" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72447" e_stop="72248"/>
          <exon e_start="72159" e_stop="71637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTCATTTCGGACTTCTACTGGTTTTGCCTGCTAAATAAGCATAGCTTCAACTTTGGCTTGA</genome_strand>
        <mrna_strand>TTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGGTTTGTTTTCGCCTTCACTTTTCATTTCGGACTTCTACTGGTTTTGCCTGCT-AATAAGCATAGCTTCAACTTTGGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309089" ref_strand="+" ref_description="SGN-E309089 [cLEZ-1-O1](-)">
      <seq>cttgaattacatgtgctgaaaccttaacataataaaaaaaactttacttattttctgaagtttgaatttgcttttatgatgtatggtgtgtactctcagagtttggttctgtgtttatatgaactaaaaacactcgggagttgagttgtgttttgttttcgccttcacttttcatttcggacttctactggttttgcctgctaaataagcatagcttcaactttggctttgaaaaaaaaaaaaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="72167" stop="71336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71867" g_stop="71639" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="232" polyA_stop="251"/>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E309089" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71867" e_stop="71639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTCATTTCGGACTTCTACTGGTTTTGCCTGCTAAATAAGCATAGCTTCAACTTTGGCTT</genome_strand>
        <mrna_strand>CTTGAATTACATGTGCTGAAACCTTAACATAATAAAAAAAACTTTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTCATTTCGGACTTCTACTGGTTTTGCCTGCTAAATAAGCATAGCTTCAACTTTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702133" ref_strand="+" ref_description="SGN-E702133 [FA17DE12]">
      <seq>attctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactcagagcagcaatagaatgcttgaaaaccccagagaaacactttgagaaagttcttcgattggctatcaagaagctgggtacagacgaatgggatcttactagagttgttgccactcgggctgaagttgacatggagcgtatcaaagaagagtaccataggaggaacagtgttacattggaccgtgcaattgctggagacacttcaggagactatgaaaaaatgcttctggctctgattgggcacggagatgcttgaattacatgtgctgaaaccttaagataataaaaaaaactctacttattttctgaaagttgaatttgcttttatgatgtatggtgtgtactctcagagtttggntctgtgtttatatgaactaaaacactcgggagttgagttgtgttttgttttcgccctcccttttcatttcggacttctactggttttgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="73771" stop="71368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73683" g_stop="73658" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="245" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72460" g_stop="72248" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="458" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72159" g_stop="71668" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="949" r_length="491" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E702133" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>950</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73683" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72248"/>
          <exon e_start="72159" e_stop="71668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTCATTTCGGACTTCTACTGGTTTTGCCTG</genome_strand>
        <mrna_strand>ATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAAGTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGNTCTGTGTTTATATGAACT-AAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCCTCCCTTTTCATTTCGGACTTCTACTGGTTTTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277083" ref_strand="+" ref_description="SGN-E277083 [cLEN-22-F4]">
      <seq>atatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactcagagcagcaatagaatgcttgaaaaccccagagaaacactttgagaaagttcttcgattggctatcaagaagctgggtacagacgaatgggatcttactagagttgttgccactcgggctgaagttgacatggagcgtatcaaagaagagtaccataggaggaacagtgttacattggaccgtgcaattgctggagacacttcaggagactatgaaaaaatgcttctggctctgattgggcacggagatgcttgaattacatgtgctgaaaccttaagataataaaaaaaactctacttattttctgaagtttgaatttgcttttatgatgtatggtgtgtactctcagagtttggttctgtgtttatatgaactaaaaacactcgggagttgagttgtgttttgttttcgccttcacttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="72684" stop="71394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72384" g_stop="72248" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72159" g_stop="71695" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="602" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="603" polyA_stop="612"/>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E277083" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72384" e_stop="72248"/>
          <exon e_start="72159" e_stop="71695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTC</genome_strand>
        <mrna_strand>ATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238753" ref_strand="+" ref_description="SGN-E238753 [cLEL-9-K8](-)">
      <seq>gtacctgaaactactcagagcagcaatagaatgcttgaaaaccccagaaaacactttgagaaagttcttcgattggctatcaagaagctgggtacagacgaatgggatcttactagagttgttgccactcgggctgaagttgacatggagcgtatcaaagaagagtaccataggaggaacagtgttacattggaccgtgcaattgctggagacacttcaggagactatgaaaaaatgcttctggctctgattgggcacggagatgcttgaattacatgtgctgaaaccttaagataataaaaaaaactctacttattttctgaagtttgaatttgcttttatgatgtatggtgtgtactctcagagtttggttctgtgtttatatgaactaaaaacactcgggagttgagttgtgttttgttttcgccttcccttttccaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="72433" stop="71395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72133" g_stop="71695" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="464"/>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E238753" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72133" e_stop="71695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTC</genome_strand>
        <mrna_strand>GTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGA-AAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCCCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238977" ref_strand="+" ref_description="SGN-E238977 [cLEL-9-K8](-)">
      <seq>aaagttcttcgattggctatcaagaagctgggtacagacgaatgggatcttactagagttgttgccactcgggctgaagttgacatggagcgtatcaaagaagagtaccataggaggaacagtgttacattggaccgtgcaattgctggagacacttcaggagactatgaaaaaatgcttctggctctgattgggcacggagatgcttgaattacatgtgctgaaaccttaagataataaaaaaaactctacttattttctgaagtttgaatttgcttttatgatgtatggtgtgtactctcagagtttggttctgtgtttatatgaactaaaaacactcgggagttgagttgtgttttgttttcgccttcccttttccaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="72372" stop="71395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72072" g_stop="71695" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="404"/>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E238977" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72072" e_stop="71695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTC</genome_strand>
        <mrna_strand>AAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCCCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353616" ref_strand="+" ref_description="SGN-E353616 [cTOS-10-C17]">
      <seq>tgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactcagagcagcaatagaatgcttgaaaaccccagagaaacactttgagaaagttcttcgattggctatcaagaagctgggtacagacgaatgggatcttactagagttgttgccactcgggctgaagttgacatggagcgtatcaaagaagagtaccataggaggaacagtgttacattggaccgtgcaattgctggagacacttcaggagactatgaaaaaatgcttctggctctgattgggcacggagatgcttgaattacatgtgctgaaaccttaagataataaaaaaaactctacttattttctgaagtttgaatttgcttttatgatgtatggtgtgtactctcagagtttggttctgtgtttatatgaactaaaaacactcgggagttgagttgtgtttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="72714" stop="71415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72414" g_stop="72248" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72159" g_stop="71714" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="613" r_length="446" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E353616" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72414" e_stop="72248"/>
          <exon e_start="72159" e_stop="71714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTT</genome_strand>
        <mrna_strand>TGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353633" ref_strand="+" ref_description="SGN-E353633 [cTOS-10-C6]">
      <seq>aagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactcagagcagcaatagaatgcttgaaaaccccagagaaacactttgagaaagttcttcgattggctatcaagaagctgggtacagacgaatgggatcttactagagttgttgccactcgggctgaagttgacatggagcgtatcaaagaagagtaccataggaggaacagtgttacattggaccgtgcaattgctggagacacttcaggagactatgaaaaaatgcttctggctctgattgggcacggagatgcttgaattacatgtgctgaaaccttaagataataaaaaaaactctacttattttctgaagtttgaatttgcttttatgatgtatggtgtgtactctcagagtttggttctgtgtttatatgaactaaaaacactcgggagttgagttgtgtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="72698" stop="71415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72398" g_stop="72248" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72159" g_stop="71714" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="597" r_length="446" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="598" polyA_stop="607"/>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E353633" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72398" e_stop="72248"/>
          <exon e_start="72159" e_stop="71714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTT</genome_strand>
        <mrna_strand>AAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356531" ref_strand="+" ref_description="SGN-E356531 [cTOS-21-M19]">
      <seq>ttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactcagagcagcaatagaatgcttgaaaaccccagagaaacactttgagaaagttcttcgattggctatcaagaagctgggtacagacgaatgggatcttactagagttgttgccactcgggctgaagttgacatggagcgtatcaaagaagagtaccataggaggaacagtgttacattggaccgtgcaattgctggagacacttcaggagactatgaaaaaatgcttctggctctgattgggcacggagatgcttgaattacatgtgctgaaaccttaagataataaaaaaaactctacttattttctgaagtttgaatttgcttttatgatgtatggtgtgtactctcagagtttggttctgtgtttatatgaactaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="72747" stop="71439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72447" g_stop="72248" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72159" g_stop="71739" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="621" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E356531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72447" e_stop="72248"/>
          <exon e_start="72159" e_stop="71739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAA</genome_strand>
        <mrna_strand>TTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703669" ref_strand="+" ref_description="SGN-E703669 [FA22AE11]">
      <seq>ggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactcagagcagcaatagaatgcttgaaaaccccagagaaacactttgagaaagttcttcgattggctatcaagaagctgggtacagacgaatgggatcttactagagttgttgccactcgggctgaagttgacatggagcgtatcaaagaagagtaccataggaggaacagtgttacattggaccgtgcaattgctggagacacttcaggagactatgaaaaaatgcttctggctctgattgggcacggagatgcttgaattacatgtgctgaaaccttaagataataaaaaaactctacttattttctgaagtttgaatttgcttttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="74087" stop="71490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73787" g_stop="73658" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="349" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72460" g_stop="72248" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="562" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72159" g_stop="71790" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="931" r_length="369" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E703669" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>932</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73787" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72248"/>
          <exon e_start="72159" e_stop="71790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATG</genome_strand>
        <mrna_strand>GGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAAT-AAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699330" ref_strand="+" ref_description="SGN-E699330 [FA09CG01]">
      <seq>ccgtgtgtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactcagagcagcaatagaatgcttgaaaacccccacagaaacactttgagaaagttcttcgattggctatcaagaagctgggtacagaccaatgggatcttactacagttgttgccactcgggctgaacttgacatggagcgtatcaaagaagagtaccataggaggaacagcgttacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="73748" stop="71642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73744" g_stop="73744" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73743" i_stop="73449" i_length="295">
            <donor d_prob="0.714" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="219" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72460" g_stop="72248" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="432" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72159" g_stop="71942" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="651" r_length="219" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E699330" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73744" e_stop="73744"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72248"/>
          <exon e_start="72159" e_stop="71942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAA-CCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATT</genome_strand>
        <mrna_strand>C.......................................................................................................................................................................................................................................................................................................CGTGT-GTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCCACAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACCAATGGGATCTTACTACAGTTGTTGCCACTCGGGCTGAACTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGCGTTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553596" ref_strand="+" ref_description="SGN-E553596 [cTSC-1-J5]">
      <seq>aaataattcaagaacacacagcacattctcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactcagagcagcaatagaatgcttgaaaaccccagagaaacactttgagaaagttcttcgattggctatcaagaagctgggtacagacgaatgggatcttactagagttgttgccactcgggctgaagttgacatggagcgtatcaaagaagagtaccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75484" stop="71661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75184" g_stop="75063" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="268" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="487" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72248" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="700" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72159" g_stop="71961" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="899" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E553596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75184" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72248"/>
          <exon e_start="72159" e_stop="71961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATTCAAGAACACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATA</genome_strand>
        <mrna_strand>AAATAATTCAAGAACACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704215" ref_strand="+" ref_description="SGN-E704215 [FA23CF11]">
      <seq>ctcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataattgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactcagagcagcaatagaatgcttgaaaaccccagagaaacactttgagaaagttcttcgattggctatcaagaagctgggtacagacgaatgggatcttactagagttgttgccactcgggctgaagttgacatggagcgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75457" stop="71678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75157" g_stop="75063" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="241" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="460" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72248" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="672" r_length="212" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72159" g_stop="71978" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="854" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E704215" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75157" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72248"/>
          <exon e_start="72159" e_stop="71978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTAT</genome_strand>
        <mrna_strand>CTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAATTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGT-AAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710615" ref_strand="+" ref_description="SGN-E710615 [FA55DH06]">
      <seq>aaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactcagagcagcaatagaatgcttgaaaaccccagagaaacactttgagaaagttcttcgattggctatcaagaagctgggtacagacgaatgggatcttactagagttgttgccactcgggctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75442" stop="71694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75142" g_stop="75063" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="226" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="445" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72248" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="658" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72159" g_stop="71994" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="824" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E710615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75142" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72248"/>
          <exon e_start="72159" e_stop="71994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAG</genome_strand>
        <mrna_strand>AAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553891" ref_strand="+" ref_description="SGN-E553891 [cTSC-2-I7]">
      <seq>cacattctcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactcagagcagcaatagaatgcttgaaaaccccagagaaacactttgagaaagtcttcgattggctatcaagaagctgggtacagacgaatgggatcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75463" stop="71719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75163" g_stop="75063" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="247" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="466" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72248" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="679" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72159" g_stop="72019" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="819" r_length="140" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E553891" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75163" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72248"/>
          <exon e_start="72159" e_stop="72019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACT</genome_strand>
        <mrna_strand>CACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAG-TCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720077" ref_strand="+" ref_description="SGN-E720077 [FC09DA08]">
      <seq>aatcggccgaattgaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactcagagcagcaatagaatgcttgaaaaccccagagaaacactttgagaaagttcttcgattggctatcaagaagctgggtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75466" stop="71738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75169" g_stop="75063" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="252" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="471" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72248" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="684" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72159" g_stop="72038" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="806" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E720077" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75169" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72248"/>
          <exon e_start="72159" e_stop="72038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTAC</genome_strand>
        <mrna_strand>AATCGGCCGAAT-TGAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720914" ref_strand="+" ref_description="SGN-E720914 [FC12AH12]">
      <seq>aatcggccgaattcccatggggatccgatctgtagaaacacagcacattctcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactcagagcagcaatagaatgcttgaaaacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75479" stop="71789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75172" g_stop="75063" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="144" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="290" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="509" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72248" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="722" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72159" g_stop="72089" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="793" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E720914" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75172" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72248"/>
          <exon e_start="72159" e_stop="72089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCC</genome_strand>
        <mrna_strand>AA-ACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718320" ref_strand="+" ref_description="SGN-E718320 [FC04BC10]">
      <seq>gggcgattggcggccaatcggccgaattgaagaacacacagcacattctcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactcagagcagcaatagaatgcttgaaaacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75480" stop="71789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75172" g_stop="75063" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="142" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="288" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="507" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72248" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="720" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72159" g_stop="72089" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="791" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E718320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75172" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72248"/>
          <exon e_start="72159" e_stop="72089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCC</genome_strand>
        <mrna_strand>AACACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335553" ref_strand="+" ref_description="SGN-E335553 [cTOE-2-J23]">
      <seq>tcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgangaagatctctgacaaggcttacaatgaccgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgaccgatgagtacctgaaactactcagagcagcaatagaatgcttgaaaacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75456" stop="71789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75156" g_stop="75063" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="240" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="459" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72248" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="674" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72159" g_stop="72089" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="746" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E335553" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75156" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72248"/>
          <exon e_start="72159" e_stop="72089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGA-GAAGATCTCTGACAAGGCTTACAATGA-CGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGA-CGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCC</genome_strand>
        <mrna_strand>TCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGANGAAGATCTCTGACAAGGCTTACAATGACCGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACCGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724943" ref_strand="+" ref_description="SGN-E724943 [FC25CE02]">
      <seq>gctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgatgatgacgatgagtacctgaaactactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75390" stop="71818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75090" g_stop="75063" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="174" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="393" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72248" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="606" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72159" g_stop="72118" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="648" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E724943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75090" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72248"/>
          <exon e_start="72159" e_stop="72118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTC</genome_strand>
        <mrna_strand>GCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E556478" ref_strand="+" ref_description="SGN-E556478 [cTSD-3-J4]">
      <seq>acagcacattctcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagctgagtgctacgttcaaccactacaatgatcaccatggccatgaaatcatcaaggatctggaagctgaagatgacgatgagtacctgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75467" stop="71823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75167" g_stop="75063" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="251" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="470" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72248" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="683" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72159" g_stop="72123" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="720" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E556478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75167" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72248"/>
          <exon e_start="72159" e_stop="72123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAGGTAAAACTCAAACATTAGAAAGACTTGAAATTATGTTAGTTACCATTGTTTAAAAGGGATCTATTCATTGTACTGTGTGATGATGCAGGATCTGGAAGCTGATGATGACGATGAGTACCTGAAAC</genome_strand>
        <mrna_strand>ACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG........................................................................................GATCTGGAAGCTGAAGATGACGATGAGTACCTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543099" ref_strand="+" ref_description="SGN-E543099 [TUS-64-L21]">
      <seq>cataaaagttatgttacgttacaaaaataataaaatcgtgtatcccaatgacttttgcgatggcaaaaaatgtctgaatccactttttatgttcccacgtatattcttgagattgtacatatactatagttttgactcataaataattcaagaacacacagcacattctcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacnaggcttacaatgacgaggagatcatccgaatcatttctactaggagtaaagcacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75624" stop="72001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75324" g_stop="75063" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="408" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="627" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72301" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="787" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E543099" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75324" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAAAGTTATGTTACGTTACAAAAATAATAAAATCGTGTATCCCAATGACTTTTGCGATGGCAAAAAATGTCTGAATCCACTTTTTATGTTCCCACGTATATTCTTGAGATTGTACATATACTATAGTTTTGACTCATAAATAATTCAAGAACACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGC</genome_strand>
        <mrna_strand>CATAAAAGTTATGTTACGTTACAAAAATAATAAAATCGTGTATCCCAATGACTTTTGCGATGGCAAAAAATGTCTGAATCCACTTTTTATGTTCCCACGTATATTCTTGAGATTGTACATATACTATAGTTTTGACTCATAAATAATTCAAGAACACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACNAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309088" ref_strand="+" ref_description="SGN-E309088 [cLEZ-1-O1]">
      <seq>taattcaagaacacacagcacattctcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75481" stop="72016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75181" g_stop="75063" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="265" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="484" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72316" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="629" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E309088" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75181" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCAAGAACACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTA</genome_strand>
        <mrna_strand>TAATTCAAGAACACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306201" ref_strand="+" ref_description="SGN-E306201 [cLEY-13-F23]">
      <seq>ttctcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75459" stop="72018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75159" g_stop="75063" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="243" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="462" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72318" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="605" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E306201" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75159" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTAC</genome_strand>
        <mrna_strand>TTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330285" ref_strand="+" ref_description="SGN-E330285 [cTOD-4-H23]">
      <seq>tcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75456" stop="72018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75156" g_stop="75063" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="240" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="459" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72318" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="602" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E330285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75156" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTAC</genome_strand>
        <mrna_strand>TCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202737" ref_strand="+" ref_description="SGN-E202737 [cLEB-1-C12]">
      <seq>gcacgagagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgaagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatttctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75426" stop="72018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75131" g_stop="75063" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="215" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="434" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72318" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="578" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E202737" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75131" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATG-AGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTAC</genome_strand>
        <mrna_strand>GCACGAGAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310310" ref_strand="+" ref_description="SGN-E310310 [cTOA-1-C21]">
      <seq>atgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaagcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75438" stop="72023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75138" g_stop="75063" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="222" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="441" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72323" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="579" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E310310" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75138" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATT</genome_strand>
        <mrna_strand>ATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAAGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272383" ref_strand="+" ref_description="SGN-E272383 [cLEM-19-C8]">
      <seq>aggatcttctcaaggactttgattctgaactgacaagtgatttggggggtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccacgtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttctggttcctcttataactgcattcacatatgaaggagatgaggtgaacatgacattatcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="73794" stop="72023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73704" g_stop="73658" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="0.91"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="266" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72460" g_stop="72323" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="404" r_length="138" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E272383" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73704" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATT</genome_strand>
        <mrna_strand>AGGATCTTCTCAAGGACTTTGATTCTGAACTGACAAGTGATTTGGGG.................................................................................................................................................................................................................GGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCACGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGTTCCTCTTATAACTGCATTCACATATGAAGGAGATGAGGTGAACATGACATTATCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310028" ref_strand="+" ref_description="SGN-E310028 [cLEZ-8-C13]">
      <seq>cacattctcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagatcatccgaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75463" stop="72025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75163" g_stop="75063" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="247" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="466" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72325" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="602" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E310028" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75163" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCA</genome_strand>
        <mrna_strand>CACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245809" ref_strand="+" ref_description="SGN-E245809 [cLEF-48-G14]">
      <seq>agaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttacaatgacgaggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75453" stop="72036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75153" g_stop="75063" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="237" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="456" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72336" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="581" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E245809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75153" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGAT</genome_strand>
        <mrna_strand>AGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231374" ref_strand="+" ref_description="SGN-E231374 [cLED-10-H5]">
      <seq>tccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagcaagaaaggaagcaaatatactgcatgagaagatctctgacaaggcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75421" stop="72050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75121" g_stop="75063" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="205" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="424" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72350" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="535" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E231374" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75121" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTAC</genome_strand>
        <mrna_strand>TCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304596" ref_strand="+" ref_description="SGN-E304596 [cLEX-11-B10]">
      <seq>aagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacattagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75454" stop="72099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75154" g_stop="75063" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="238" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="457" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72399" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="519" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E304596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75154" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGC</genome_strand>
        <mrna_strand>AAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330376" ref_strand="+" ref_description="SGN-E330376 [cTOD-4-I3]">
      <seq>acattctcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaagtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75462" stop="72102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75162" g_stop="75063" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="246" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="465" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72402" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="524" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E330376" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75162" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATT</genome_strand>
        <mrna_strand>ACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAAGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341290" ref_strand="+" ref_description="SGN-E341290 [cTOE-22-J1]">
      <seq>ttctcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75459" stop="72103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75159" g_stop="75063" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="243" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="462" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72403" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="520" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E341290" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75159" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACAT</genome_strand>
        <mrna_strand>TTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276455" ref_strand="+" ref_description="SGN-E276455 [cLEN-17-P21]">
      <seq>gaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatgaggtgaacatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75452" stop="72104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75152" g_stop="75063" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="236" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="455" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72404" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="512" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E276455" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75152" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACA</genome_strand>
        <mrna_strand>GAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310247" ref_strand="+" ref_description="SGN-E310247 [cTOA-1-I13]">
      <seq>cacattctcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcattcagatatgaaggagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75463" stop="72118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75163" g_stop="75063" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="247" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="466" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72418" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="509" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E310247" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75163" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATG</genome_strand>
        <mrna_strand>CACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303315" ref_strand="+" ref_description="SGN-E303315 [cLEX-2-I15]">
      <seq>ataaaagttatgttacgttacaaaaataataaaatcgtgtatcccaatgacttttgcgatggcaaaaaatgtctgaatccactttttatgttcccacgtatattcttgagattgtacatatactatagttttgactcataaataattcaagaacacacagcacattctcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75623" stop="72135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75323" g_stop="75063" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="407" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="626" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72435" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="652" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E303315" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75323" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAGTTATGTTACGTTACAAAAATAATAAAATCGTGTATCCCAATGACTTTTGCGATGGCAAAAAATGTCTGAATCCACTTTTTATGTTCCCACGTATATTCTTGAGATTGTACATATACTATAGTTTTGACTCATAAATAATTCAAGAACACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTGCATT</genome_strand>
        <mrna_strand>ATAAAAGTTATGTTACGTTACAAAAATAATAAAATCGTGTATCCCAATGACTTTTGCGATGGCAAAAAATGTCTGAATCCACTTTTTATGTTCCCACGTATATTCTTGAGATTGTACATATACTATAGTTTTGACTCATAAATAATTCAAGAACACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709357" ref_strand="+" ref_description="SGN-E709357 [FA51CE09]">
      <seq>ttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcaccgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggtcatccatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcacgcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75410" stop="72139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75110" g_stop="75063" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="194" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="414" r_length="220" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72439" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="436" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E709357" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75110" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTAT-CATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAACTG</genome_strand>
        <mrna_strand>TTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAC.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTCATCCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCACGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708984" ref_strand="+" ref_description="SGN-E708984 [FA42BD04]">
      <seq>cccttattctcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggcgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaacatgttgcttatcatacaagtggggatttccgtaagcttttggttcctcttataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75460" stop="72142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75165" g_stop="75063" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="249" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="468" r_length="219" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.613" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72460" g_stop="72442" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="487" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E708984" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75165" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
          <exon e_start="72460" e_stop="72442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAGGTACTTCGCATATAAGATCTACTGTGCCACATTTAATTCATTGTTATTCTAGTGCCAGTCAACTTTGTCATTAGATCAGCTGTAGAGAAAAACCTATAGTCAGCCGAAGTTTGCTAAAGAATCTGCCACTTTGTTGTTTTCTATAAATCTATAGACGATTCTGAAATTACTAGCCGAGAATTTGGATGAAATGAAGCTCCACCATGAGTCTAGGTATCGGCAATTCTTGGGGCTTTTTTATTTTCATTGAAGCGATTATTTGACTGTTTAGTGATTCGAGAACCAGAAGATCATTTTGCCTAGTAAAGCTCATCAACTCTTCTTTTTGCTCGTTGTGACTTCTTAAGGATGATTCTTTCTACCATGTAAGCTGTTGCACTTGCGCCTATTTGCCACCTTTGGGGTGTTTAAGATGAATGATAAACGGTGACAAGTGATGGATAGTCTCCGGTTACGACCATCCACCTCCAGCCATAACGTTGGGGGTTAACCTCACCAAGGGAGCGAAGTGGAGAAGGATCACCGTTGTTGTGCTCTTGAGCCAGGGGAAACTGAGGTTACGGTTTACTGTGTCCAAAAAATAAAATAAAAGGTTTAAGGATGATAGTGTCTGAGATAACAGTGTAAATAGTTAGATAAGCACCTTAAAGTTAGATTTTTGTGTTGTCTGTCTTTGTCTCCAGTGAATACTGAGAATACATGCAACAAATAAATCTTGCAATCACCGTCGTTAAGCTGGTCATATTGTATTAAACTAATTCCCGAACAGCTTTTGGTTCCTCTTATAA</genome_strand>
        <mrna_strand>CCCTTATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGCGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAACATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGTTCCTCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324520" ref_strand="+" ref_description="SGN-E324520 [cTOC-9-C4]">
      <seq>gtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtggggatttccgtaagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75431" stop="72928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75131" g_stop="75063" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="215" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73230" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="434" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E324520" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75131" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG</genome_strand>
        <mrna_strand>GTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710704" ref_strand="+" ref_description="SGN-E710704 [FA56BC03]">
      <seq>ccctttttcgagtcttaaagttccagcatcagttccagatcctcatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctccggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgcctgactgctagcaattgggctatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctccatacaagaaatcccttgaagaagatgttgccttatcacaccagtggggatttccgcaagcttctggttcctctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75437" stop="72925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75142" g_stop="75063" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="226" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73235" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="441" r_length="215" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E710704" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75142" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTG-CTTATCATACAAGTGGGGATTTCC</genome_strand>
        <mrna_strand>CCCTTTTTCGAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTCATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCCGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGCCTGACTGCTAGCAATTGGGCTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCCATACAAGAAATCCCTTGAAGAAGATGTTGCCTTATCACACCAGTGGGGATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245265" ref_strand="+" ref_description="SGN-E245265 [cLEF-44-N23]">
      <seq>atccactttttatgttcccacgtatattcttgagattgtacatatactatagttttgactcataaataattcaagaacacacagcacattctcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgcttatcatacaagtgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75547" stop="72940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75247" g_stop="75063" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="331" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73240" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="540" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E245265" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75247" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCACTTTTTATGTTCCCACGTATATTCTTGAGATTGTACATATACTATAGTTTTGACTCATAAATAATTCAAGAACACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGA</genome_strand>
        <mrna_strand>ATCCACTTTTTATGTTCCCACGTATATTCTTGAGATTGTACATATACTATAGTTTTGACTCATAAATAATTCAAGAACACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335608" ref_strand="+" ref_description="SGN-E335608 [cTOE-8-A12]">
      <seq>tcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcacttgaagaagatgttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75430" stop="72956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75130" g_stop="75063" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="214" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73256" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="407" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E335608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75130" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTT</genome_strand>
        <mrna_strand>TCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338047" ref_strand="+" ref_description="SGN-E338047 [cTOE-14-F22]">
      <seq>attctcaagaaagggaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggcaggcctaccatgctcgatacaagaaatcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75460" stop="72972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75160" g_stop="75063" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="244" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73272" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="421" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E338047" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75160" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTT</genome_strand>
        <mrna_strand>ATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281308" ref_strand="-" ref_description="SGN-E281308 [cLEL-1-H13](-)">
      <seq>gcacgagagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttttaaggcgaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75426" stop="73004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75131" g_stop="75063" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="215" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73304" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="360" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E281308" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281308" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75131" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGC</genome_strand>
        <mrna_strand>GCACGAGAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337494" ref_strand="+" ref_description="SGN-E337494 [cTOE-11-P19]">
      <seq>aaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75443" stop="73014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75143" g_stop="75063" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="227" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73314" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="362" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E337494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75143" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTT</genome_strand>
        <mrna_strand>AAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305656" ref_strand="+" ref_description="SGN-E305656 [cLEX-14-D8]">
      <seq>gaaaaaaaatgtctagtcttaaagttccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75446" stop="73015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75146" g_stop="75063" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="230" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73315" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="364" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E305656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75146" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTT</genome_strand>
        <mrna_strand>GAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309538" ref_strand="+" ref_description="SGN-E309538 [cTOA-3-I1]">
      <seq>agtcttaatgttccagcatcagttgcggatccttatggagaggctgttcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttcagcgtgtggtgcttctctggactttgagtcctgctgagcgcgacgcctacttggttaatgaggctaccaaacgtctgactgctagcaattgggttatcatggaaattgcttgtaccaggtcttctgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75432" stop="73020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75132" g_stop="75063" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="216" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73448" g_stop="73320" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="345" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E309538" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75132" e_stop="75063"/>
          <exon e_start="73803" e_stop="73658"/>
          <exon e_start="73448" e_stop="73320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAGGTTAATTAATCTCAATTTTCCATTCTTGTTCCAAATTGTGTTGGAGTACACCCCGTTTAATCAATCATTGTGGTGTATTGAATGTTTTTCTTTTTGTTCATTTATACTTTCTTAGATTTGTCTAGTCCATATCTACATTATTAATCACAGGTAACATTAGCCAAGGATTGCTTTGACTAATATATAATTTGATTCACATGATATTGCAGCGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGAT</genome_strand>
        <mrna_strand>AGTCTTAATGTTCCAGCATCAGTTGCGGATCCTTATGGAGAGGCTGTTCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG.................................................................................................................................................................................................................CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239993" ref_strand="+" ref_description="SGN-E239993 [cLED-29-B18]">
      <seq>aagggaaaaaaaacgtctagtcttaaagatccagcatcagttccagatccttatgaagatgctgagcaactcaaaaaagcttttaaaggatggggcacaaatgaggaacttattattcagattctggctcataggaatgcagcacaacgcaagttaatccgagattcttatgctgctgcttatggagaggatcttctcaaggacttggattctgaactgacaagtgattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="75450" stop="73359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75150" g_stop="75063" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.568" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73803" g_stop="73659" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="233" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E239993" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75150" e_stop="75063"/>
          <exon e_start="73803" e_stop="73659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAGGTTTCACTTTTTTTTTCTTCCAGATCCCCTTTGGTTGGATTTTGTATGCCTGATTTTAGTGCAAGATTTCTTTTCTATATTTGCATTTGCTATTTTTCTTGAATGATCAGTTGATTTTTACTTTTCCTTACTGTTTTTTCCTAGTTTAGTTTAGTTTTAGTTCTTGATGGGGTTCTTGTGATCTGAATGATCTATTCAAAATTGTTTCGAAATGTAACATAGACCATCTGCTGACTCTAAATCTTGAATCTGTCTCGGTTAGGTAAAATGCTGTGTGATTTTTTATTTAATTCATTGTTGGAGGAAATTAGTGATCTTTGACTGTAGGCATATGTAGAAGACATTTTTCTTTATGATTCTGTGTAGTCATTTCCCAAACGTATGATTGGTCTAGATTATTAATTTGTTGACAAAAATGATTAACTCCAATTCTCCGTGGTGGTTAGGCTGATTATGATGTATGGGGCGAGTGGAGTGTTGGTTAGTTAAGAATTCTAATGTCAAAAGATATGAGGTGGCGAAAATGAGGACGCTGAGGTGGATGTGGATATGTAGGAGAGATAAAGATTAAGAATGAAGATATCCAACATAACGTGGGAGTGGCTTCCGTGATGGACAAGATGAGGGAAGTGAGACTGAGATGGTTTAGACATGATATGTGAAGAGGAGGTGCACAGCGATCTAGGGAGAAATGTTAGAGGTTGGCCGTAGTGAGTTTTAGGAGACGTAGAGGGAAACCAAAAAAGTGTTGGGAGGGGTGATTAGACAAAACATGACGCAACTTCAGCTTTCCGATGATATGATTCTAGATTGAAGGTTATGGAGGTCACGGATTAGGGTAGAAGGTTAGTAAATAGTTGAATGTTGTCTCGTTTCCAAGGGGATAGCTTGGTGGTAGTTTTGTTTCATTGTACCTATTTCCCCAGTAATACAAGTAGTAGTAGCATTTTCTCATAGTTGTCTGTCTTGCAATTTTTGTTGCTCGTTATTTACTGTGCTTCTGTTATCACATTAGTTGGTTATTGTTATTGCTCTTGTTTTTTGAATGCTCTAGGTTATGCTTTCCCTTTAATTTTCAATGTCCTGTTACTCTGTTGTGTGTTTTGGGAACAGCCTATCTACCTCCACGAGGTAGGGTTTAGGTTCCTCCCCAGACCCCGACTATGGGACTACATCGAGTTTGCTGTTGTTGTTTGGGCTTGCAAAGCAGGAAGCTGAATTTTGTTTTCCACAGAAGACTCATGGTTAAACGTTTGCAGGATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCA</genome_strand>
        <mrna_strand>AAGGGAAAAAAAACGTCTAGTCTTAAAGATCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304534" ref_strand="+" ref_description="SGN-E304534 [cLEX-11-G22]">
      <seq>ctttctcctaatattccacccactttccttttcctttttaggtatattctcaactctttttcaccattaatggcgttttagagcattacaaaccccacaaaagtagtggaatttgttgttgtcataaaggagaatactacttatagctttttagaagtaatgggtagtgaaaatcaacagcaatttgaagagaatcttcttcataatcataatcatcaggagcagcagcagcagcagaggaagaaccgttctttaaagagtaaagctgcgcactttgtatcggatgttgctactgttattcttaaccccatatctgataaacccttaaagcccagaccaccacctttgcctgaagatggatctgattctgacggaagtaagcatgagtcaaatgcagagggagatgccactgatttagttgacggtcctgatacatcttctttctcagcgttcctatattcactgttgtcgaccacaagatccgagagtaagcctaacactattggaaaatatgataagcaagatgatcgtgatgagtcaatacctgaacttacaatgagggaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="78777" stop="80520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79077" g_stop="79427" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79428" i_stop="80004" i_length="577">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80005" g_stop="80220" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="567" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E304534" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79077" e_stop="79427"/>
          <exon e_start="80005" e_stop="80220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCCTAATATTCCACCCACTTTCCTTTTCCTTTTTAGGTATATTCTCAACTCTTTTTCACCATTAATGGCGTTTTAGAGCATCACAAACCCCAAAAAAGTAGTGGAATTTGTTGTTGTCATAAAGGAGAATACTACTTATAGCTTTTTAGAAGTAATGGGTAGTGAAAATCAACAGCAATTTGAAGAGAATCTTCTTCATAATCATAATCATCAGGAGCAGCAGCAGCAGCAGAGGAAGAACCGTTCTTTAAGGAGTAAAGCTGCGCACTTTGTATCGGATGTTGCTACTGTTATTCTTAACCCCATATCTGATAAACCCTTAAAGCCCAGACCACCACCTTTGCCTGTAAGTTTTGGGGGTTCTTGATAATTGAAATGATATATGTATATGTTTTGTATTCTAAATGAAATTTTGATCTTGTTGGGGTTTGTAGTATGATCTTTTGATGATAATTTCAGCTCTTGAACACCCAATTTGGAATTGATCAGAAATGAGGGTTTAGGTTGACTATTATAGTGTAGCCTATGAGCATATAATCTGTGATCTTTAGCTGAACTTGGTAAGTTGTCAATTTTTGTCTAACCTAGTTTCTAGCTAGGCCTCCCAACTTTGTATGTTTTTGTTGATTTTCGAGGGAGTCAAGTCATGTCAAATCCTAGCTTGCTTGTCTCCCTTGATTTTTCCACAATAAGGTAATTGTTGGGTCGTCTAGTCTTGGAGGAAGAACAAGATATGAATAGGATTGCAGCATCATAATCACTTCTTAGTATTCACTGCCCTTTTTACTGAAGATGCAGTGTGGATAACATCCTTTAATATTGGGGCATTTGATATACATTATACTCTGAAAGCAAAGCAGAAGAGAGGTTCTGTTATATTCCCTACAGATTGTATGTTAATAGTTTTTCTTATATTTCTTTAGGAAGATGGATCTGATTCTGACGGAAGTAAGCATGAGTCAAATGCAGAGGGAGATGCCACTGATTTAGTTGACGGTCCTGATACATCTTCTTTCTCAGCGTTCCTATATTCACTGTTGTCGACCACAGGATCCGAGAGTAAGCCTAACACTATTGGAAAATATGATAAGCAAGATGATCGTGATGAGTCAATACCTGAACTTACAATGAGGGAACCT</genome_strand>
        <mrna_strand>CTTTCTCCTAATATTCCACCCACTTTCCTTTTCCTTTTTAGGTATATTCTCAACTCTTTTTCACCATTAATGGCGTTTTAGAGCATTACAAACCCCACAAAAGTAGTGGAATTTGTTGTTGTCATAAAGGAGAATACTACTTATAGCTTTTTAGAAGTAATGGGTAGTGAAAATCAACAGCAATTTGAAGAGAATCTTCTTCATAATCATAATCATCAGGAGCAGCAGCAGCAGCAGAGGAAGAACCGTTCTTTAAAGAGTAAAGCTGCGCACTTTGTATCGGATGTTGCTACTGTTATTCTTAACCCCATATCTGATAAACCCTTAAAGCCCAGACCACCACCTTTGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGGATCTGATTCTGACGGAAGTAAGCATGAGTCAAATGCAGAGGGAGATGCCACTGATTTAGTTGACGGTCCTGATACATCTTCTTTCTCAGCGTTCCTATATTCACTGTTGTCGACCACAAGATCCGAGAGTAAGCCTAACACTATTGGAAAATATGATAAGCAAGATGATCGTGATGAGTCAATACCTGAACTTACAATGAGGGAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330393" ref_strand="+" ref_description="SGN-E330393 [cTOD-4-M21]">
      <seq>acccactttccttttcctttttaggtatattctcaactctttttcaccattaatggcgttttagagcatcacaaaccccaaaaaagtagtggaatttgttgttgtcataaaggagaatactacttatagctttttagaagtaatgggtagtgaaaatcaacagcaatttgaagagaatcttcttcataatcataatcatcaagagcagcagcagcagcagaggaagaaccgttctttaaggagtaaagctgcgcactttgtatcggatgttgctactgttattcttaaccccatatctgataaacccttaaagcccagaccaccacctttgcctgaagatggatctgattctgacggaagtaagcatgagtcaaatgcagagggagatgccactgatttagttgacggtcctgatacatcttctttctcagcgttcctatattcactgttgtcgaccacaggatccgagagtaagcctaacactattggaaaatatgataagcaagatgatcgtgatgagtcaatacctgaacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="78794" stop="80507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79094" g_stop="79427" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79428" i_stop="80004" i_length="577">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80005" g_stop="80207" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="537" r_length="203" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E330393" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79094" e_stop="79427"/>
          <exon e_start="80005" e_stop="80207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCACTTTCCTTTTCCTTTTTAGGTATATTCTCAACTCTTTTTCACCATTAATGGCGTTTTAGAGCATCACAAACCCCAAAAAAGTAGTGGAATTTGTTGTTGTCATAAAGGAGAATACTACTTATAGCTTTTTAGAAGTAATGGGTAGTGAAAATCAACAGCAATTTGAAGAGAATCTTCTTCATAATCATAATCATCAGGAGCAGCAGCAGCAGCAGAGGAAGAACCGTTCTTTAAGGAGTAAAGCTGCGCACTTTGTATCGGATGTTGCTACTGTTATTCTTAACCCCATATCTGATAAACCCTTAAAGCCCAGACCACCACCTTTGCCTGTAAGTTTTGGGGGTTCTTGATAATTGAAATGATATATGTATATGTTTTGTATTCTAAATGAAATTTTGATCTTGTTGGGGTTTGTAGTATGATCTTTTGATGATAATTTCAGCTCTTGAACACCCAATTTGGAATTGATCAGAAATGAGGGTTTAGGTTGACTATTATAGTGTAGCCTATGAGCATATAATCTGTGATCTTTAGCTGAACTTGGTAAGTTGTCAATTTTTGTCTAACCTAGTTTCTAGCTAGGCCTCCCAACTTTGTATGTTTTTGTTGATTTTCGAGGGAGTCAAGTCATGTCAAATCCTAGCTTGCTTGTCTCCCTTGATTTTTCCACAATAAGGTAATTGTTGGGTCGTCTAGTCTTGGAGGAAGAACAAGATATGAATAGGATTGCAGCATCATAATCACTTCTTAGTATTCACTGCCCTTTTTACTGAAGATGCAGTGTGGATAACATCCTTTAATATTGGGGCATTTGATATACATTATACTCTGAAAGCAAAGCAGAAGAGAGGTTCTGTTATATTCCCTACAGATTGTATGTTAATAGTTTTTCTTATATTTCTTTAGGAAGATGGATCTGATTCTGACGGAAGTAAGCATGAGTCAAATGCAGAGGGAGATGCCACTGATTTAGTTGACGGTCCTGATACATCTTCTTTCTCAGCGTTCCTATATTCACTGTTGTCGACCACAGGATCCGAGAGTAAGCCTAACACTATTGGAAAATATGATAAGCAAGATGATCGTGATGAGTCAATACCTGAACTTAC</genome_strand>
        <mrna_strand>ACCCACTTTCCTTTTCCTTTTTAGGTATATTCTCAACTCTTTTTCACCATTAATGGCGTTTTAGAGCATCACAAACCCCAAAAAAGTAGTGGAATTTGTTGTTGTCATAAAGGAGAATACTACTTATAGCTTTTTAGAAGTAATGGGTAGTGAAAATCAACAGCAATTTGAAGAGAATCTTCTTCATAATCATAATCATCAAGAGCAGCAGCAGCAGCAGAGGAAGAACCGTTCTTTAAGGAGTAAAGCTGCGCACTTTGTATCGGATGTTGCTACTGTTATTCTTAACCCCATATCTGATAAACCCTTAAAGCCCAGACCACCACCTTTGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGGATCTGATTCTGACGGAAGTAAGCATGAGTCAAATGCAGAGGGAGATGCCACTGATTTAGTTGACGGTCCTGATACATCTTCTTTCTCAGCGTTCCTATATTCACTGTTGTCGACCACAGGATCCGAGAGTAAGCCTAACACTATTGGAAAATATGATAAGCAAGATGATCGTGATGAGTCAATACCTGAACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214805" ref_strand="+" ref_description="SGN-E214805 [cLEC-79-B8]">
      <seq>ttccttttcctttttaggtatattctcaactctttttcaccattaatggcgttttagagcatcacaaaccccaaaaaagtagtggaatttgttgttgtcataaaggagaatactacttatagctttttagaagtaatgggtagtgaaaatcaacagcaatttgaagagaatcttcttcataatcataatcatcaggagcagcagcagcagcagaggaagaaccgttctttaaggagtaaagctgcgcactttgtatcggatgttgctactgttattcttaaccccatatctgataaacccttaaagcccagaccaccacctttgcctgaagatggatctgattctgacggaagtaagcatgagtcaaatgcagagggagatgccactgatttagttgacggtcctgatacatcttctttctcagcgttcctatattcactgttgtcgaccacaggatccgagagtaagcctaacactattggaaaatatgataagcaagatgatcgtgatgagtcaatacctgaacttacaatgagggaacctagcagaagaaaaggtatactttccaggggtaaacattccctcggcagagctcttcaccaagttgctagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="78801" stop="80590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79101" g_stop="79427" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79428" i_stop="80004" i_length="577">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80005" g_stop="80290" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="613" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E214805" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79101" e_stop="79427"/>
          <exon e_start="80005" e_stop="80290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTTTCCTTTTTAGGTATATTCTCAACTCTTTTTCACCATTAATGGCGTTTTAGAGCATCACAAACCCCAAAAAAGTAGTGGAATTTGTTGTTGTCATAAAGGAGAATACTACTTATAGCTTTTTAGAAGTAATGGGTAGTGAAAATCAACAGCAATTTGAAGAGAATCTTCTTCATAATCATAATCATCAGGAGCAGCAGCAGCAGCAGAGGAAGAACCGTTCTTTAAGGAGTAAAGCTGCGCACTTTGTATCGGATGTTGCTACTGTTATTCTTAACCCCATATCTGATAAACCCTTAAAGCCCAGACCACCACCTTTGCCTGTAAGTTTTGGGGGTTCTTGATAATTGAAATGATATATGTATATGTTTTGTATTCTAAATGAAATTTTGATCTTGTTGGGGTTTGTAGTATGATCTTTTGATGATAATTTCAGCTCTTGAACACCCAATTTGGAATTGATCAGAAATGAGGGTTTAGGTTGACTATTATAGTGTAGCCTATGAGCATATAATCTGTGATCTTTAGCTGAACTTGGTAAGTTGTCAATTTTTGTCTAACCTAGTTTCTAGCTAGGCCTCCCAACTTTGTATGTTTTTGTTGATTTTCGAGGGAGTCAAGTCATGTCAAATCCTAGCTTGCTTGTCTCCCTTGATTTTTCCACAATAAGGTAATTGTTGGGTCGTCTAGTCTTGGAGGAAGAACAAGATATGAATAGGATTGCAGCATCATAATCACTTCTTAGTATTCACTGCCCTTTTTACTGAAGATGCAGTGTGGATAACATCCTTTAATATTGGGGCATTTGATATACATTATACTCTGAAAGCAAAGCAGAAGAGAGGTTCTGTTATATTCCCTACAGATTGTATGTTAATAGTTTTTCTTATATTTCTTTAGGAAGATGGATCTGATTCTGACGGAAGTAAGCATGAGTCAAATGCAGAGGGAGATGCCACTGATTTAGTTGACGGTCCTGATACATCTTCTTTCTCAGCGTTCCTATATTCACTGTTGTCGACCACAGGATCCGAGAGTAAGCCTAACACTATTGGAAAATATGATAAGCAAGATGATCGTGATGAGTCAATACCTGAACTTACAATGAGGGAACCTAGCAGAAGAAAAGGTATACTTTCCAGGGGTAAACATTCCCTCGGCAGAGCTCTTCACCAAGTTGCTAGAC</genome_strand>
        <mrna_strand>TTCCTTTTCCTTTTTAGGTATATTCTCAACTCTTTTTCACCATTAATGGCGTTTTAGAGCATCACAAACCCCAAAAAAGTAGTGGAATTTGTTGTTGTCATAAAGGAGAATACTACTTATAGCTTTTTAGAAGTAATGGGTAGTGAAAATCAACAGCAATTTGAAGAGAATCTTCTTCATAATCATAATCATCAGGAGCAGCAGCAGCAGCAGAGGAAGAACCGTTCTTTAAGGAGTAAAGCTGCGCACTTTGTATCGGATGTTGCTACTGTTATTCTTAACCCCATATCTGATAAACCCTTAAAGCCCAGACCACCACCTTTGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGGATCTGATTCTGACGGAAGTAAGCATGAGTCAAATGCAGAGGGAGATGCCACTGATTTAGTTGACGGTCCTGATACATCTTCTTTCTCAGCGTTCCTATATTCACTGTTGTCGACCACAGGATCCGAGAGTAAGCCTAACACTATTGGAAAATATGATAAGCAAGATGATCGTGATGAGTCAATACCTGAACTTACAATGAGGGAACCTAGCAGAAGAAAAGGTATACTTTCCAGGGGTAAACATTCCCTCGGCAGAGCTCTTCACCAAGTTGCTAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542439" ref_strand="+" ref_description="SGN-E542439 [TUS-63-L23]">
      <seq>tgttgtcataaaggagaatactacttatagctttttagaagtaatgggtagtgaaaatcaacagcaatttgaagagaatcttcttcataatcataatcatcaggagcagcagcagcagcagaggaagaaccgttctttaaggagtaaagctgcgcactttgtatcggatgttgctactgttattcttaaccccatatctgataaacccttaaagcccagaccaccacctttgcctgaagatggatctgattctgacggaagtaagcatgagtcaaatgcagagctcttcaccaagttgctagactaggcggctttaggaatcagggttcggcaaagggcagctctgatatggtgtttgatgatggaagtaattctaaagtttccggagataatcaaatacctttggaagatatgaataagaaacctcttctgaacaatcttccgggaacttctgagccttcagttctcctcactgagaaggcacgaatttctctttatgctgcactgcctgtgcttgtgcaggacaggaagtgggtcttgttatacagtacatggaagaatggaatatcactctcgactttatacaggagaagcctactctggcctggcatcagtctgctggttgtgggggaccataatggtgctgtgtttggtgggctagttgatgcacctttaaagccaacaacaaagagaagatatcagggtacaaacaattcatttgttttctcaaatgtatctggccaacctgtcatatttcgtcccacaggtgtcaatcgctattttactgtctgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="78893" stop="82838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79193" g_stop="79427" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79428" i_stop="80004" i_length="577">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80005" g_stop="80052" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="283" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80053" i_stop="80269" i_length="217">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80270" g_stop="80534" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="548" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80535" i_stop="80648" i_length="114">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80649" g_stop="80721" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="621" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80722" i_stop="81719" i_length="998">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81720" g_stop="81800" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="702" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81801" i_stop="81886" i_length="86">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81887" g_stop="81950" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="766" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="81951" i_stop="82510" i_length="560">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.457" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82511" g_stop="82538" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="794" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E542439" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79193" e_stop="79427"/>
          <exon e_start="80005" e_stop="80052"/>
          <exon e_start="80270" e_stop="80534"/>
          <exon e_start="80649" e_stop="80721"/>
          <exon e_start="81720" e_stop="81800"/>
          <exon e_start="81887" e_stop="81950"/>
          <exon e_start="82511" e_stop="82538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTCATAAAGGAGAATACTACTTATAGCTTTTTAGAAGTAATGGGTAGTGAAAATCAACAGCAATTTGAAGAGAATCTTCTTCATAATCATAATCATCAGGAGCAGCAGCAGCAGCAGAGGAAGAACCGTTCTTTAAGGAGTAAAGCTGCGCACTTTGTATCGGATGTTGCTACTGTTATTCTTAACCCCATATCTGATAAACCCTTAAAGCCCAGACCACCACCTTTGCCTGTAAGTTTTGGGGGTTCTTGATAATTGAAATGATATATGTATATGTTTTGTATTCTAAATGAAATTTTGATCTTGTTGGGGTTTGTAGTATGATCTTTTGATGATAATTTCAGCTCTTGAACACCCAATTTGGAATTGATCAGAAATGAGGGTTTAGGTTGACTATTATAGTGTAGCCTATGAGCATATAATCTGTGATCTTTAGCTGAACTTGGTAAGTTGTCAATTTTTGTCTAACCTAGTTTCTAGCTAGGCCTCCCAACTTTGTATGTTTTTGTTGATTTTCGAGGGAGTCAAGTCATGTCAAATCCTAGCTTGCTTGTCTCCCTTGATTTTTCCACAATAAGGTAATTGTTGGGTCGTCTAGTCTTGGAGGAAGAACAAGATATGAATAGGATTGCAGCATCATAATCACTTCTTAGTATTCACTGCCCTTTTTACTGAAGATGCAGTGTGGATAACATCCTTTAATATTGGGGCATTTGATATACATTATACTCTGAAAGCAAAGCAGAAGAGAGGTTCTGTTATATTCCCTACAGATTGTATGTTAATAGTTTTTCTTATATTTCTTTAGGAAGATGGATCTGATTCTGACGGAAGTAAGCATGAGTCAAATGCAGAGGGAGATGCCACTGATTTAGTTGACGGTCCTGATACATCTTCTTTCTCAGCGTTCCTATATTCACTGTTGTCGACCACAGGATCCGAGAGTAAGCCTAACACTATTGGAAAATATGATAAGCAAGATGATCGTGATGAGTCAATACCTGAACTTACAATGAGGGAACCTAGCAGAAGAAAAGGTATACTTTCCAGGGGTAAACATTCCCTCGGCAGAGCTCTTCACCAAGTTGCTAGACTAGGCGGCTTTAGGAATCAGGGTTCGGCAAAGGGCAGCTCTGATATGGTGTTTGATGATGGAAGTAATTCTAAAGTTTCCGGAGATAATCAAATACCTTTGGAAGATATGAATAAGAAACCTCTTCTGAACAATCTTCCGGGAACTTCTGAGCCTTCAGTTCTCCTCACTGAGAAGGCACGAATTTCTCTTTATGCTGCACTGCCTGTGCTTGTGCAGGACAGGAAGTGGGTCTTGTTATACAGGCAGGGATCCTGAGTTGTATTAAATTTGAATGCTCTCTGAGCAGCTCTATGCTTATTTTCTCTCCTATTTCCAATTTTATAGTGGATTCTAACTTCTCAATTCTATTTTGCCAGTACATGGAAGAATGGAATATCACTCTCGACTTTATACAGGAGAAGCCTACTCTGGCCTGGCATCAGTCTGCTGGTAATTAACTGAAGACTTGTAAAGAGATATGCATTGCTCATTAAGAATTATGTAACAGGAGTTCCACATTGAAGAGCTGTTTTAATTTACATTTTGAACAATTCTTTGATTGCTTATGGTCTAGATGAATAAGAACTATTATTTTGTTTTCTGTATGTGTGTGTATATCACTTCCTGAAGTAACCACCAGATAATCTCCTTCACTTTTATCAGTATCTGTTGAACTTAAAAAAGAGTAGAATCCCTGTGCTTTCTTGTATGTGGAATAAGATCCAGCTGTTTTAATATATGTTCAAATACTCCAGAGTTTTGCTATCTTTTGATGCCCTAACTTATTAGTGTTGCTGTTGCAGTCCAAATCATATTTTCAGAAACCGAGTATAGGTCAGCTATATAATATACCTCTTACTAAAAAGACAATTTGTCATCGTTTCATAACAGATCTAACCAATGCTTCTCTTGGATGATAAACTCATTGTATAGTAATTTGTTCCTTCTGATATTTCTGGAACTAAGTTTTCTGGGTTTGGTATTTCCTTTCTGCCCTTGTTTTTGATATGCGTTTTTTGAACCGAGTGTCTATGGAAACAGCCTTTCTATCTTCACAAGGTAGGGGCAAGGCTGCATACAATGTACCCACCACCCTCCCCACACTAGGTATGTTGTTGTCGTAAGATTCCTGGCTTCGTTATGATTTGAGAAAGTAAATGATAGATCTTGAGATGGAAATGCCTCTGAAATTTGATGCGAGGCATTGATAAAGTCAAAGTATTGTCACTTTCGATTTTGATTTCTTGCTGGTTGCTCTTTTTGTATGAGTCCAAGTGCTCTATCTCTATGCATTATTGAAGTTAAAAGCATTGGTGTCGGTGTCTGGTGTCTTTTGATTTTCTATCAATGTGAGTGGTGGACAGTCATTAAGACTTAGAGACTTACAGATTATTTGATCTGGCATAAGACTCTAGTTTTGTTTCTCTCATATTGTCCAAATCTTATAGGTTGTGGGGGACCATAATGGTGCTGTGTTTGGTGGGCTAGTTGATGCACCTTTAAAGCCAACAACAAAGAGAAGATATCAGGTAATTCTGAGCAGAATACTTAAAACATGTCACCTCTGCCTTTGAGTTTCCATTTGTCATCTTGATTTGATTTTGGTATTTAACAGGGTACAAACAATTCATTTGTTTTCTCAAATGTATCTGGCCAACCTGTCATATTTCGTCCCACAGGTATCTCTCTTTTCCTTGTACTTGAACCAGACATTTAAAGTTTGTAGAACAAATTTCCGTTCTTTGTTTTGTCTGCTGTCGCTAACAAATTTATTTTTTAATACATGGGGACGGGAGTGGTCTGGTTCAGCATGTCCATATCCTCTTCTATTTGTGGTATTGATGGTCAGGAAGAGAATTAAAACAGTGGTCCTCTTATGGGAAATCTTGGGTTCGAAACATTTTTAATACGTTGTTTACCTGATTTACTGTCATCTTACGATGATGAAAATTTTAGCTGGTGATAGTAGTATAACCATACAAACTTTGAAAAATAGATTTCGTGGTGGATACCAAAGATATAATGATCAAGAATTTATTGTTTTCCAGAAATTAGTCATTTATTCTCTCTGAAATCACTATTATCCCATTTCCAGCATGATTGTTGACTGTTTCTGCTTCTGACTTTGATTTTTCGGTTCCTTTTGCCTTTTATGATAATGTTTGTCCATAAGCCTTGGAACTGTTTGGAACTCAAATCAATTACTTGTGACATGACATTGACGCTGTCGCCTATGTAGGTGTCAATCGCTATTTTACTGTCTGTTC</genome_strand>
        <mrna_strand>TGTTGTCATAAAGGAGAATACTACTTATAGCTTTTTAGAAGTAATGGGTAGTGAAAATCAACAGCAATTTGAAGAGAATCTTCTTCATAATCATAATCATCAGGAGCAGCAGCAGCAGCAGAGGAAGAACCGTTCTTTAAGGAGTAAAGCTGCGCACTTTGTATCGGATGTTGCTACTGTTATTCTTAACCCCATATCTGATAAACCCTTAAAGCCCAGACCACCACCTTTGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGGATCTGATTCTGACGGAAGTAAGCATGAGTCAAATGCAGAG.........................................................................................................................................................................................................................CTCTTCACCAAGTTGCTAGACTAGGCGGCTTTAGGAATCAGGGTTCGGCAAAGGGCAGCTCTGATATGGTGTTTGATGATGGAAGTAATTCTAAAGTTTCCGGAGATAATCAAATACCTTTGGAAGATATGAATAAGAAACCTCTTCTGAACAATCTTCCGGGAACTTCTGAGCCTTCAGTTCTCCTCACTGAGAAGGCACGAATTTCTCTTTATGCTGCACTGCCTGTGCTTGTGCAGGACAGGAAGTGGGTCTTGTTATACAG..................................................................................................................TACATGGAAGAATGGAATATCACTCTCGACTTTATACAGGAGAAGCCTACTCTGGCCTGGCATCAGTCTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGGGGACCATAATGGTGCTGTGTTTGGTGGGCTAGTTGATGCACCTTTAAAGCCAACAACAAAGAGAAGATATCAG......................................................................................GGTACAAACAATTCATTTGTTTTCTCAAATGTATCTGGCCAACCTGTCATATTTCGTCCCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAATCGCTATTTTACTGTCTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302172" ref_strand="+" ref_description="SGN-E302172 [cLEW-19-J18]">
      <seq>gttgtcataaaggagaatactacttatagctttttagaagtaatgggtagtgaaaatcaacagcaatttgaagagaatcttcttcataatcataatcatcaggagcagcagcagcagcagaggaagaaccgttctttaaggagtaaagctgcgcactttgtatcggatgttgctactgttattcttaaccccatatctgataaacccttaaagcccagaccaccacctttgcctgaagatggatctgattctgacggaagtaagcatgagtcaaatgcagagctcttcaccaagttgctagactaggcggctttaggaatcagggttcggcaaagggcagctctgatatggtgtttgatgatggaagtaattctaaagtttccggagataatcaaatacctttggaagatatgaataagaaacctcttctgaacaatcttccgggaacttctgagccttcagttctcctcactgagaaggcacgaatttctctttatgctgcactgcctgtgcttgtgcaagacaggaagtgggtcttgttatacagtacatggaagaatggaatatcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="78894" stop="80973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79194" g_stop="79427" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79428" i_stop="80004" i_length="577">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80005" g_stop="80052" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="282" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80053" i_stop="80269" i_length="217">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80270" g_stop="80534" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="547" r_length="265" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80535" i_stop="80648" i_length="114">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80649" g_stop="80673" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="572" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E302172" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79194" e_stop="79427"/>
          <exon e_start="80005" e_stop="80052"/>
          <exon e_start="80270" e_stop="80534"/>
          <exon e_start="80649" e_stop="80673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTCATAAAGGAGAATACTACTTATAGCTTTTTAGAAGTAATGGGTAGTGAAAATCAACAGCAATTTGAAGAGAATCTTCTTCATAATCATAATCATCAGGAGCAGCAGCAGCAGCAGAGGAAGAACCGTTCTTTAAGGAGTAAAGCTGCGCACTTTGTATCGGATGTTGCTACTGTTATTCTTAACCCCATATCTGATAAACCCTTAAAGCCCAGACCACCACCTTTGCCTGTAAGTTTTGGGGGTTCTTGATAATTGAAATGATATATGTATATGTTTTGTATTCTAAATGAAATTTTGATCTTGTTGGGGTTTGTAGTATGATCTTTTGATGATAATTTCAGCTCTTGAACACCCAATTTGGAATTGATCAGAAATGAGGGTTTAGGTTGACTATTATAGTGTAGCCTATGAGCATATAATCTGTGATCTTTAGCTGAACTTGGTAAGTTGTCAATTTTTGTCTAACCTAGTTTCTAGCTAGGCCTCCCAACTTTGTATGTTTTTGTTGATTTTCGAGGGAGTCAAGTCATGTCAAATCCTAGCTTGCTTGTCTCCCTTGATTTTTCCACAATAAGGTAATTGTTGGGTCGTCTAGTCTTGGAGGAAGAACAAGATATGAATAGGATTGCAGCATCATAATCACTTCTTAGTATTCACTGCCCTTTTTACTGAAGATGCAGTGTGGATAACATCCTTTAATATTGGGGCATTTGATATACATTATACTCTGAAAGCAAAGCAGAAGAGAGGTTCTGTTATATTCCCTACAGATTGTATGTTAATAGTTTTTCTTATATTTCTTTAGGAAGATGGATCTGATTCTGACGGAAGTAAGCATGAGTCAAATGCAGAGGGAGATGCCACTGATTTAGTTGACGGTCCTGATACATCTTCTTTCTCAGCGTTCCTATATTCACTGTTGTCGACCACAGGATCCGAGAGTAAGCCTAACACTATTGGAAAATATGATAAGCAAGATGATCGTGATGAGTCAATACCTGAACTTACAATGAGGGAACCTAGCAGAAGAAAAGGTATACTTTCCAGGGGTAAACATTCCCTCGGCAGAGCTCTTCACCAAGTTGCTAGACTAGGCGGCTTTAGGAATCAGGGTTCGGCAAAGGGCAGCTCTGATATGGTGTTTGATGATGGAAGTAATTCTAAAGTTTCCGGAGATAATCAAATACCTTTGGAAGATATGAATAAGAAACCTCTTCTGAACAATCTTCCGGGAACTTCTGAGCCTTCAGTTCTCCTCACTGAGAAGGCACGAATTTCTCTTTATGCTGCACTGCCTGTGCTTGTGCAGGACAGGAAGTGGGTCTTGTTATACAGGCAGGGATCCTGAGTTGTATTAAATTTGAATGCTCTCTGAGCAGCTCTATGCTTATTTTCTCTCCTATTTCCAATTTTATAGTGGATTCTAACTTCTCAATTCTATTTTGCCAGTACATGGAAGAATGGAATATCACTC</genome_strand>
        <mrna_strand>GTTGTCATAAAGGAGAATACTACTTATAGCTTTTTAGAAGTAATGGGTAGTGAAAATCAACAGCAATTTGAAGAGAATCTTCTTCATAATCATAATCATCAGGAGCAGCAGCAGCAGCAGAGGAAGAACCGTTCTTTAAGGAGTAAAGCTGCGCACTTTGTATCGGATGTTGCTACTGTTATTCTTAACCCCATATCTGATAAACCCTTAAAGCCCAGACCACCACCTTTGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGGATCTGATTCTGACGGAAGTAAGCATGAGTCAAATGCAGAG.........................................................................................................................................................................................................................CTCTTCACCAAGTTGCTAGACTAGGCGGCTTTAGGAATCAGGGTTCGGCAAAGGGCAGCTCTGATATGGTGTTTGATGATGGAAGTAATTCTAAAGTTTCCGGAGATAATCAAATACCTTTGGAAGATATGAATAAGAAACCTCTTCTGAACAATCTTCCGGGAACTTCTGAGCCTTCAGTTCTCCTCACTGAGAAGGCACGAATTTCTCTTTATGCTGCACTGCCTGTGCTTGTGCAAGACAGGAAGTGGGTCTTGTTATACAG..................................................................................................................TACATGGAAGAATGGAATATCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542436" ref_strand="+" ref_description="SGN-E542436 [TUS-63-L23](-)">
      <seq>gctgcactgcctgtgcttgtgcaggacaggaagtgggtcttgttatacagtacatggaagaatggaatatcactctcgactttatacaggagaagcctactctggcctggcatcagtctgctggttgtgggggaccataatggtgctgtgtttggtgggctagttgatgcacctttaaagccaacaacaaagagaagatatcagggtacaaacaattcatttgttttctcaaatgtatctggccaacctgtcatatttcgtcccacaggtgtcaatcgctattttactgtctgttccacggagtatttagctttgggaggcggtggccattttgctctctacttagacggggatctgctaacaggttcaagtgcaacatcagaaacttatggaaattcttgtttggcacatactgaagactttgaagttaaggaagttgagttatggggctttgtatatgcttccaagtatgaagagatggtttcgattttgcgaacagagacacctggaatttgccgctggtaaacacagtgttaaagatgcttgctttccagtctaaatgattgtttctgtttggtgcccatggttgcggacagcaccacatggaatgcaggataggttttgtacatatgttttcacatgttcagcaacaattttacacttgtataggtgtgtttctttacatgtacagtgaaccattttgataaaattctctttgcttcggtaaatgagaatgaacgtgagagctaaatgaaaatattcattaaactttctccagaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="80185" stop="83953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80485" g_stop="80534" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80535" i_stop="80648" i_length="114">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80649" g_stop="80721" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="123" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80722" i_stop="81719" i_length="998">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81720" g_stop="81800" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="204" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81801" i_stop="81886" i_length="86">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81887" g_stop="81950" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="268" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81951" i_stop="82510" i_length="560">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.457" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82511" g_stop="82598" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="356" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82599" i_stop="83002" i_length="404">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.392" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83003" g_stop="83087" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="441" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="83088" i_stop="83312" i_length="225">
            <donor d_prob="0.770" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83313" g_stop="83653" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="781" r_length="340" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="782" polyA_stop="795"/>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E542436" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80485" e_stop="80534"/>
          <exon e_start="80649" e_stop="80721"/>
          <exon e_start="81720" e_stop="81800"/>
          <exon e_start="81887" e_stop="81950"/>
          <exon e_start="82511" e_stop="82598"/>
          <exon e_start="83003" e_stop="83087"/>
          <exon e_start="83313" e_stop="83653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCACTGCCTGTGCTTGTGCAGGACAGGAAGTGGGTCTTGTTATACAGGCAGGGATCCTGAGTTGTATTAAATTTGAATGCTCTCTGAGCAGCTCTATGCTTATTTTCTCTCCTATTTCCAATTTTATAGTGGATTCTAACTTCTCAATTCTATTTTGCCAGTACATGGAAGAATGGAATATCACTCTCGACTTTATACAGGAGAAGCCTACTCTGGCCTGGCATCAGTCTGCTGGTAATTAACTGAAGACTTGTAAAGAGATATGCATTGCTCATTAAGAATTATGTAACAGGAGTTCCACATTGAAGAGCTGTTTTAATTTACATTTTGAACAATTCTTTGATTGCTTATGGTCTAGATGAATAAGAACTATTATTTTGTTTTCTGTATGTGTGTGTATATCACTTCCTGAAGTAACCACCAGATAATCTCCTTCACTTTTATCAGTATCTGTTGAACTTAAAAAAGAGTAGAATCCCTGTGCTTTCTTGTATGTGGAATAAGATCCAGCTGTTTTAATATATGTTCAAATACTCCAGAGTTTTGCTATCTTTTGATGCCCTAACTTATTAGTGTTGCTGTTGCAGTCCAAATCATATTTTCAGAAACCGAGTATAGGTCAGCTATATAATATACCTCTTACTAAAAAGACAATTTGTCATCGTTTCATAACAGATCTAACCAATGCTTCTCTTGGATGATAAACTCATTGTATAGTAATTTGTTCCTTCTGATATTTCTGGAACTAAGTTTTCTGGGTTTGGTATTTCCTTTCTGCCCTTGTTTTTGATATGCGTTTTTTGAACCGAGTGTCTATGGAAACAGCCTTTCTATCTTCACAAGGTAGGGGCAAGGCTGCATACAATGTACCCACCACCCTCCCCACACTAGGTATGTTGTTGTCGTAAGATTCCTGGCTTCGTTATGATTTGAGAAAGTAAATGATAGATCTTGAGATGGAAATGCCTCTGAAATTTGATGCGAGGCATTGATAAAGTCAAAGTATTGTCACTTTCGATTTTGATTTCTTGCTGGTTGCTCTTTTTGTATGAGTCCAAGTGCTCTATCTCTATGCATTATTGAAGTTAAAAGCATTGGTGTCGGTGTCTGGTGTCTTTTGATTTTCTATCAATGTGAGTGGTGGACAGTCATTAAGACTTAGAGACTTACAGATTATTTGATCTGGCATAAGACTCTAGTTTTGTTTCTCTCATATTGTCCAAATCTTATAGGTTGTGGGGGACCATAATGGTGCTGTGTTTGGTGGGCTAGTTGATGCACCTTTAAAGCCAACAACAAAGAGAAGATATCAGGTAATTCTGAGCAGAATACTTAAAACATGTCACCTCTGCCTTTGAGTTTCCATTTGTCATCTTGATTTGATTTTGGTATTTAACAGGGTACAAACAATTCATTTGTTTTCTCAAATGTATCTGGCCAACCTGTCATATTTCGTCCCACAGGTATCTCTCTTTTCCTTGTACTTGAACCAGACATTTAAAGTTTGTAGAACAAATTTCCGTTCTTTGTTTTGTCTGCTGTCGCTAACAAATTTATTTTTTAATACATGGGGACGGGAGTGGTCTGGTTCAGCATGTCCATATCCTCTTCTATTTGTGGTATTGATGGTCAGGAAGAGAATTAAAACAGTGGTCCTCTTATGGGAAATCTTGGGTTCGAAACATTTTTAATACGTTGTTTACCTGATTTACTGTCATCTTACGATGATGAAAATTTTAGCTGGTGATAGTAGTATAACCATACAAACTTTGAAAAATAGATTTCGTGGTGGATACCAAAGATATAATGATCAAGAATTTATTGTTTTCCAGAAATTAGTCATTTATTCTCTCTGAAATCACTATTATCCCATTTCCAGCATGATTGTTGACTGTTTCTGCTTCTGACTTTGATTTTTCGGTTCCTTTTGCCTTTTATGATAATGTTTGTCCATAAGCCTTGGAACTGTTTGGAACTCAAATCAATTACTTGTGACATGACATTGACGCTGTCGCCTATGTAGGTGTCAATCGCTATTTTACTGTCTGTTCCACGGAGTATTTAGCTTTGGGAGGCGGTGGCCATTTTGCTCTCTACTTAGACGGGGATCTGTAAGATTTCTTTCCCCTTCATTATGATCCTTTTGTCATTGCTTTATATGTGTATGCTTTTTGACTGCTTCCTTCCTAGTATCATAATGTCCTCCAATAAAAGGAGAAATAAGAGGAAAATCAAATGCCACACACCGCCTTGGGAGTTACCTTTTTCCTGTCCCATTTTTGGTTGCCATGACAGGATTTTAAAAAAATCTTCTTAATCTCAAGTTCACAGCTATCATCATCGTCATCATGAATATCACCTTTTAATATATTTTCTGTAGAATCAGATCTTATGATTCCAATTTATTGCCTCTATTGCCCATAGATTAAAAAACAAGGGGAAATCAAATTCTATTGAGTATGTTAAAGATATCTTTGACTCGGATAAATTAGCTCAACAAACTTCACTTTTCCAGGCTAACAGGTTCAAGTGCAACATCAGAAACTTATGGAAATTCTTGTTTGGCACATACTGAAGACTTTGAAGTTAAGGAAGTTGAGGTAGTCTCGTAACTGCATCTCTGTATGTGTTCGCACGCATGCACATTTTGTGTTCTGCCTTGTCTGTCTCTTCACTATCTCTATATGTTATAGTTACATGTGTGTATCTGTCAGGGCAGTTTGTTTGAAATTAGCTCTATGAAATTTACCTTTCAAGAGTACAATATGCATTTAACATGAGAAATTAATTTTTAATGTGATATCCATTTATCATATCATATGCAGTTATGGGGCTTTGTATATGCTTCCAAGTATGAAGAGATGGTTTCGATTTTGCGAACAGAGACACCTGGAATTTGCCGCTGGTAAACACAGTGTTAAAGATGCTTGCTTTCCAGTCTAAATGATTGTTTCTGTTTGGTGCCCATGGTTGCGGACAGCACCACATGGAATGCAGGATAGGTTTTGTACATATGTTTTCACATGTTCAGCAACAATTTTACACTTGTATAGGTGTGTTTCTTTACATGTACAGTGAACCATTTTGATAAAATTCTCTTTGCTTCGGTAAATGAGAATGAACGTGAGAGCTAAATGAAAATATTCATTAAACTGTTCTCCAGAAA</genome_strand>
        <mrna_strand>GCTGCACTGCCTGTGCTTGTGCAGGACAGGAAGTGGGTCTTGTTATACAG..................................................................................................................TACATGGAAGAATGGAATATCACTCTCGACTTTATACAGGAGAAGCCTACTCTGGCCTGGCATCAGTCTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGGGGACCATAATGGTGCTGTGTTTGGTGGGCTAGTTGATGCACCTTTAAAGCCAACAACAAAGAGAAGATATCAG......................................................................................GGTACAAACAATTCATTTGTTTTCTCAAATGTATCTGGCCAACCTGTCATATTTCGTCCCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAATCGCTATTTTACTGTCTGTTCCACGGAGTATTTAGCTTTGGGAGGCGGTGGCCATTTTGCTCTCTACTTAGACGGGGATCT....................................................................................................................................................................................................................................................................................................................................................................................................................GCTAACAGGTTCAAGTGCAACATCAGAAACTTATGGAAATTCTTGTTTGGCACATACTGAAGACTTTGAAGTTAAGGAAGTTGAG.................................................................................................................................................................................................................................TTATGGGGCTTTGTATATGCTTCCAAGTATGAAGAGATGGTTTCGATTTTGCGAACAGAGACACCTGGAATTTGCCGCTGGTAAACACAGTGTTAAAGATGCTTGCTTTCCAGTCTAAATGATTGTTTCTGTTTGGTGCCCATGGTTGCGGACAGCACCACATGGAATGCAGGATAGGTTTTGTACATATGTTTTCACATGTTCAGCAACAATTTTACACTTGTATAGGTGTGTTTCTTTACATGTACAGTGAACCATTTTGATAAAATTCTCTTTGCTTCGGTAAATGAGAATGAACGTGAGAGCTAAATGAAAATATTCATTAAACT-TTCTCCAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="95846" stop="95037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95546" g_stop="95328" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95546" e_stop="95328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCACACCAGATTTCAGGGTGAGCTAAAGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGATGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAA</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAGTACATGTTCTTGTGATGATGACTGCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="99446" stop="100704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99746" g_stop="100404" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99746" e_stop="100404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATCGTTACCTTATTTAGTTGTCTGTAATCTATGCACATCCTAAAACTTCCACCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGCAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCTATTGTATAAGGGGGTATAGAAATGGGGCCAATACCCGGTTCAAGATCAATGTAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCATGGACTACCGAAACTGACTCAATTGACGGTACTTGGGTAGTGTCATCCCTGAGGTGTGCCAAGAAAGCTAAACAACCCTTACTAACCATTCTCTTAGCACGAAGAAAGGAGATGATACGAACCGGGTTGGAAGTGTAGTTACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="101538" stop="99534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101238" g_stop="101065" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101064" i_stop="100326" i_length="739">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100325" g_stop="99798" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101238" e_stop="101065"/>
          <exon e_start="100325" e_stop="99798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAAGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGAACTTTCCAGATATGCCACTCAGCTTTGTTTCAGTCCATAAGAGCGGATTTGCCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTTTAGCCTTATAGGTAGCGACTACGGCAAAATCCTTTCAAGAAGTGGTGGACTTCGTGATAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCATGGCATCGACATCAAAAAGTTTTCGAAGGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCAGGAGGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTTAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTAAATCCAGAGAGTGTTATGGATGTGGGGAGACTGGACACATTAAGAGGTATTGTCCAAAACAGAGTTACAGACCTCCAATAGTTAGAGGTAGAGGTGGTCATAGAAGAGGTCGTTATCCTGGAGAACGTGGTGGCCGAGGTAATGATGGTCACCAAACCAACCGGGGTGGCGGGCAAACTGGCTGCGGTGCAGCATGGTTGGGGTAACGGGCAAACAGGTGATAGGGCCCATTGTTACGCCTTCCCTGGGCGGTCTGAAGCGGAGACATCTGATGTTGTTATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTGGTCTGGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTAACTACACTTCCAACCCGGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGACACTACCCAAGTACCGTCAATTGAGTCAGTTTCGGTAGTCCATGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTACATTGATCTTGAACCGGGTATTGGCCCCATTTCTATACCCCCTTATACAATAGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTGCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGGTGGAAGTTTTAGGATGTGCATAGATTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGA-TTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="99518" stop="100876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99815" g_stop="100576" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99815" e_stop="100576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACTTCCACCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGCAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCTATTGTATAAGGGGGTATAGAAATGGGGCCAATACCCGGTTCAAGATCAATGTAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCATGGACTACCGAAACTGACTCAATTGACGGTACTTGGGTAGTGTCATCCCTGAGGTGTGCCAAGAAAGCTAAACAACCCTTACTAACCATTCTCTTAGCACGAAGAAAGGAGATGATACGAACCGGGTTGGAAGTGTAGTTACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATAACAACATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="99518" stop="100775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99815" g_stop="100475" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99815" e_stop="100475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACTTCCACCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGCAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCTATTGTATAAGGGGGTATAGAAATGGGGCCAATACCCGGTTCAAGATCAATGTAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCATGGACTACCGAAACTGACTCAATTGACGGTACTTGGGTAGTGTCATCCCTGAGGTGTGCCAAGAAAGCTAAACAACCCTTACTAACCATTCTCTTAGCACGAAGAAAGGAGATGATACGAACCGGGTTGGAAGTGTAGTTACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="100818" stop="99558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100518" g_stop="99858" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100518" e_stop="99858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTGGTCTGGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTAACTACACTTCCAACCCGGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGACACTACCCAAGTACCGTCAATTGAGTCAGTTTCGGTAGTCCATGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTACATTGATCTTGAACCGGGTATTGGCCCCATTTCTATACCCCCTTATACAATAGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTGCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="99918" stop="100848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100218" g_stop="100548" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100218" e_stop="100548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="102165" stop="101012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101865" g_stop="101312" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101865" e_stop="101312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGAAAGGGAAAATGAGCAAGTACAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGCTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGACTACTGTGGCTCCCTGCATGGATGCCTCATTGTAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCATACGATTTTCTGGTTGAGTTTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCGCATGTGGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="102524" stop="101639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102224" g_stop="101939" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102224" e_stop="101939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTTGTGTTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACCGCGCCAACATCAACATCAGCAAGACAAGATGCATCTGAGCCAGCCACTGAGACTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="106402" stop="107430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106711" g_stop="107130" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="450" r_length="421" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106711" e_stop="107130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATACACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTTACTGCAATTGTATAATTCACAATTGTATAATTCTTTGACCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATAGATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACATAA-TTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTCTGGGAGAGAGGCG-CTGGCAAATTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACCCTAACTATTCCATTTATTTTAGGTTGTTAG</genome_strand>
        <mrna_strand>TGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTTA-GTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="106402" stop="107278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106711" g_stop="107004" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="325" r_length="295" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106711" e_stop="107004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATACACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTTACTGCAATTGTATAATTCACAATTGTATAATTCTTTGACCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATAGATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACATAA-TTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="+" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="106402" stop="107278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106711" g_stop="106988" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="308" r_length="278" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106711" e_stop="106988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATACACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTTACTGCAATTGTATAATTCACAATTGTATAATTCTTTGACCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATAGATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACATAATTATACACTTCTGT</genome_strand>
        <mrna_strand>TGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746166" ref_strand="+" ref_description="SGN-E746166 [GI|47104888]">
      <seq>ggtaaccagtaaccgcaatcactttttcttcatttcagaagaagcgagaaaaaaaaattgcggacaatgtgtggaatacttgcaattttcggttgcactgataattctcatgccaagcgttcaagagtaatcgaactatcaagaaggttgcgccatagaggacctgactggagtggactgcatagccatgaggactgttaccttgctcatcaacgattggcaatagtagacccaacttcaggagatcaaccgttgtataatgaggacaagaccattgttgttgcggtaaatggagagatctacaaccataaggaattacgggagaaactgaagtcccatcagtttcgaactgaaagtgattgtgaagttattgcccatctttatgaagaatatggagaaaacttcgttgacatgttggatgggatgttctcttttgttcttcttgatacccgggataaaagtttcatcgctgctcgggatgccattggcattacacccctttatatggggtggggtcttgatggatccatatggttttcctcggagatgaaagccttaagtgatgattgtgaacgatttgttagcttccttcccggtcatatttattcaagcaaaaatggaggacttagaagatggtacaacccaccatggttttcggaaaccattccttctactccatatgatccccttgtcttacggaaggcttttgagaaggctgtagttaagagactcatgacggatgtaccatttggtgtgcttctctctggcggactggattcttcacttgttgctgcagtggctagccgctatttggctgatacagatgccggtcgacaatggggatcccagttgcatacgttttgcgtaggcttgaagggttctcctgatctgaaagctgccagagaggtggcagactacattggaactcgtcaccatgagtttcactttacagtgcaggaaggaattgatgccttagaggaagtcatatatcatgttgaaacatatgatgtgaccactatcagagccagtacaccaatgtttctcatgtctcggaagataaagtcattgggtgtgaaaatggttttatcaggtgaaggttctgatgaaatttttggtggttatttatatttccacaaggcacccaacaaagaggagtttcaccaagaaacttgtagaaagattaaagcacttcatctttatgattgcttgagggccaataaatctacttcagcttggggtgttgaagctcgtgtacctttcttggataaagaattcatcaatattgcaatgaacattgatccggaatggaaaatgatccgacctgacctcggaagaatagaaaagtgggttgtacgtaatgcttttgacgatgatcagaatccttatctgccaaagcatattttgtataggcagaaggaacagttcagtgatggagttggctacagttggattgatggcttgaaggatcacgcaaacagtcaagtttctgattctatgttagcgaatgcaagttttgtttaccctcataacacacccacaaccaaggaagggtactactatagaactattttcgagcgatatttccccaaggctgctgcaagagaaactgttcctggtggtccaagtgtggcctgcagcactgcaaaagcagtagaatgggatgccgcttggtccaagaatctagatccatccggtcgagctgctctcggtgttcatgaagctgcttatgaggttaaagaactatgaagttgataaagctgtagtagctgtttgattgtatatcttcattcaaaaacctgacttgttccacatttgacttcttttacgagtttgaattctttgcttctggttttacaattaccaaagtttattctacttgagaagaaatatgacgaatatgtgttatccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="129372" stop="109204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129073" g_stop="128928" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128927" i_stop="123025" i_length="5903">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123024" g_stop="122886" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="285" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122885" i_stop="121888" i_length="998">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121887" g_stop="121792" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="381" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121791" i_stop="121604" i_length="188">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121603" g_stop="121462" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="523" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121461" i_stop="115152" i_length="6310">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115151" g_stop="115056" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="619" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="115055" i_stop="114081" i_length="975">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114080" g_stop="113986" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="714" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="113985" i_stop="113040" i_length="946">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="113039" g_stop="112878" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="876" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="112877" i_stop="112072" i_length="806">
            <donor d_prob="0.639" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="112071" g_stop="111991" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="877" r_stop="957" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="111990" i_stop="111893" i_length="98">
            <donor d_prob="0.436" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="111892" g_stop="111671" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="958" r_stop="1179" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="111670" i_stop="111555" i_length="116">
            <donor d_prob="0.467" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="111554" g_stop="111420" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1180" r_stop="1314" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="111419" i_stop="110682" i_length="738">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="110681" g_stop="110601" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1315" r_stop="1395" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="110600" i_stop="110295" i_length="306">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="110294" g_stop="110208" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1396" r_stop="1482" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="110207" i_stop="110113" i_length="95">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="110112" g_stop="110005" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1483" r_stop="1590" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="110004" i_stop="109837" i_length="168">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="109836" g_stop="109504" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1591" r_stop="1923" r_length="333" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E746166" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1923</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129073" e_stop="128928"/>
          <exon e_start="123024" e_stop="122886"/>
          <exon e_start="121887" e_stop="121792"/>
          <exon e_start="121603" e_stop="121462"/>
          <exon e_start="115151" e_stop="115056"/>
          <exon e_start="114080" e_stop="113986"/>
          <exon e_start="113039" e_stop="112878"/>
          <exon e_start="112071" e_stop="111991"/>
          <exon e_start="111892" e_stop="111671"/>
          <exon e_start="111554" e_stop="111420"/>
          <exon e_start="110681" e_stop="110601"/>
          <exon e_start="110294" e_stop="110208"/>
          <exon e_start="110112" e_stop="110005"/>
          <exon e_start="109836" e_stop="109504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAACCAGTAACCGCAATCACTTTTTCTTCATTTCAGAAGAAGCGAGAAAAAAAAATTGCGGACAATGTGTGGAATACTTGCAATTTTCGGTTGCACTGATAATTCTCATGCCAAGCGTTCAAGAGTAATCGAACTATCAAGAAGGTTTATCCTTTTCTGTTATTCGATTTTTGTTATTTGATTCCCACATTGTATGTAAGTGTTTTTAGATTTGCTATTCGTTGATTTGTTCTTAGATTTGATTTTGTTATGTTTGTAACTAATTACACACAAATGTATGGTAATGAATCTGATTATCTTTGAAAATGGAAGTTGCACACTAATGCCTGGAAAAACAGCTAACTATTGATGTAGATGTTGTGCAAGACATATCCGCTGCTCCTACTTAGTTAACTGCTGGAAGAAAATTTTTTGGTGTTTTTTTTTGGATAAGGTAAATGTACAATATGGGGTTTGAACCCCATCTTGGGGTGGTAGGATATGTTTTTACTACTACTACATTATTGATGCTTGTTGTTAAAAGTTTGGTGTTTTTCAAGCACGAGAGAGATTTGAAAAGCTAAAGTACAATATAATGTAGTAATTATTTTGTGAAAGAATTTTTGGTCCTATAAAAAGCGGAATTTGTGCTTGTGGAAATTATTGAGTAATCGGAATTAACTTTTTTAGCACTTCCTGCTTTTCTGGATGTTTTTCAATACTTGAGAACTGCTAACATGTCAATTAGCAAAGGGGAAATGAACCATCTTTTCCATGTGTCTGGATTAAACATCTTATTAATAGCTATTGGAAACTTCATACTTAAAAAGAAGTGAACTTGGAGGAGCAGGGGTATAGAGGGACTTCACCATTCTTTATCTTATGCATGTCATATAATTTTTTTAAAATCTCACAAGGTACATTGTTCCAATCATGAAGAAAATTCATGTAAAGATACCATCTTAGTGGCCGAAAATTTAATACTAATGTGAAATCAGTGGTATAATTGATGCTGACTTTGCATAGTATAGGTACTCCTTTTGAGTACGATATGAGATGGGTAGACACACCATCTAACTTCATCATACTTTTTGAAGCTGTGAATTCATTGGATCTCCTTATGTGGTTCTTCTCTTGAAACACGGAGTAAAATTTTTCATTATGTTGTTGTAGCTTGATATATCTTATGATAATGTATGATGCAACAAGTGAGAGTGATTGCGGTACGAGGCCTGACTAATGGTTGTCATATCCTGCGCATCCTATGTGTGATTTAAATGCTCTACTTGTTTAAAAATTTCTAGGCTAACTTAATTAACAATTTACATTTTAAATTTACATTGTATGGGGTAAAGTGCTCTCTAGTTAAGAATGCTTATGTTCAACAGATGAATGTAGAAGAGATGAGGATGCTCAGATGAATGTGTGGGCATACGAGGAGAGATGTGATTAGGAACGATGTTATGCGAGGCAAGGTGGGAGTGGCCTCCATGGTGGACAAGATGAGAGAAGTAATATTGAGATAGTCGGGGCATGTAAAGAGGACGTGCGCTGATGTGCCAATTAGGTGTGAGAGGTTGGCTGCACCAGGAGTTAAGGAGAGGTAGGCTGAAAAAGATCTAGAAGGAGGTGATAAGACAAAACGTGGCACAACTTCAGCTTATTGAGGACATAGCCCTAGATAGGAAGTATGGACGTCGAGGATTAGGATAAAAGATTGGTAAATGGTAAGTAGTTGACAGTTGTTGCACTTTAGGTGGGAGAGGTAGGGGCTAGCCTCATCTCCTCCTCCTTAGTAGCAGTATTATTTAGTAATCGCATAGTGCTGCTAAATCAATTGGATTCTGTTGCATTTTGGTCCTTAACTACATCATCTGGAATACTCTTGATGGCACAAGATTTTTGCCAATTGTAGCCTATTTCTTTTTCTTTTTCTTTCTACTGTGGCTGGGTGCAGAAGGTTGTTCTTTGTTTTCGAGAAAAGTGGTTAATGTATTACCGATATAGCACCAAGAAGGTACTGCTGAAAGTATTTGCAACAAATTAAAATAACACCCCTTTAAGGATTTATCACAGCTTCATTATTATTTACAACAAAAATAAAACAAAAGTAAACAATTCGTTTTGATATTTTGAATAGAGTTTCCTTTGTCTTTAAAACATATTGCGTTTCTCACCCCCTAATTGTTTAACATATATATACTGGAATATTACCTGCTTATAATTGTTTTACTTGAGCCGAGGGGCTCTCAGAAACAACAACCTCTCTGCCTTCACAAGGTAAAGGTAATCTTCGTACACACCACCTTCCCTAGACCCCTTTTATAGGATTTCACTGTGTGTTTTTGCAATTGGTTATGTATTCTGGAATAGTTAGTCACCATTTCACTGACCGGAATTCCCTCCTCTAATGTTCCAGCAATTCAATAACCCACTTGTGTGCTTGGTATAATCCACTTGCACCCAACCATATTGAGAAATAACTGCCATAATACGGAAATGGAAAAAATTGGTGATTGATACTTCTCAGACATGTTCCACTTAGTAGCATTAGAGCACAACTGGATCTTCTTCTTTGATGGGTTTCGTGTGTTAAGAAAACCTCTCGAACTCTTGGGAACAAAAACACCTATATAATCAGGGAGTCAACCACAAGCAAAAGGATGGTCGCTAAGCCATATTGAGGGAGCTAATGAAATCCAAGAAGGGTGATATATCATTTACAGGGGATAAGTTGCTCCAATGGAAGAGACTAATAAGGCAAAAGGATTTCAAACTGCTAATAGGAGTTGAGATACCATCAAAACATCTGAGATTCCTTTCTTTCAAATACACCAAAAAAACATGATGGAATCATCTGCCAGGTCTTCTTGATGGGGCTATCAACTTCTCTAAGACTCCAACTTCCAACTACTTCTTTGACACTTAAAAGATTAAAGTCCTTCCAATGCTAAACCAGGAACTAGGTGGACCCTAAACCATCTATGATTGAATCAGTCTCATTGGAGTAGACATTTGTACACCAAAAACAGAACAACAAAATACATTTAAGCTTGACTTCCTGCAGGTTGTTGTCCCTATTTTAAAACATCAATCATTTCTCTCTCTCCATATAGTCCACCATATACAAGCAGGTATCATCCTCCATCTTTCTCTGTTTGTAGCCCCAACTCCAACCTCCTCCCAACTGAAAAGAGTCTCATCAACCTTACTAGGCATAGTCCAGGAAATGCCTCTGAGATTAAGGAAAATCTGGCACAGTTGATCAGTGAAATTGCAGTGTAGAAAGAGGTGTTTCACTGTCTCTGTATCCTTACAACAGAAGGAGCATCTGTTGCATAGAGATATACCTCTCTTGGCCACATTGTTCAATGTCAGAACTGCTTCATTGGCTAGCAGCCAGGTGAAGCATGCCATTATTTGTGGCACTTTGACTCTCCAAATTTGCTTCCAAGGCCATTTGAAGTCTTATAAGGAGCGTTGTTTTTCCAGATGTGTTGCCAGGATCACAGATTACCTTATTGTCCATCATAACTTGAAAGAGAATAGGAAGAGTTAACAGTGATGCTGGCCTTACTATGTAATTTCCATATCAGCTTCTTGACCATTGCCTAGCCCGTGAAAAGTCTCAAGAACCCAAAAATTTTGCAAGTCTCCCCATTCTCAATCATTCAAATATCTTCTGAAATTAAAGTTCCAACCATCAGGTTCTCCGATAGCACCCGAGCTTGAATCAGGCATCAAATGAGTTTGAAGAAATGTGGATATAGATCTTCAAAAGGAGCATGACCTATCCACTCGTTTACCCAAAAAACAATTTGCTTTCATTCCCCATTTAAACCCAATGTTGCTCACAAAGGGCTCTAATATTCTTCCATAAACCCACCCCATGAGTGGAAGTCACTGGTTTAGTAGTCCAACAGCTTCTACTTTATACTGTTCACTGATGACAGCCTTCCAAAGTGACTGCTCTTGTAAAGAGAATCTCCATAATGGCATAATCATTTGATTATCATTAATGCCTCAAGTTTGTAATGCCAAGATACCTTCCTTCTTGCTATATGTTAAAGTACTCCACTTGACCAAGTGAAAAAATCTTTTTTTACTGTTTCTCTGTCAATGGAAATCTCTTTTAACATATTACATATCCAATACTTCTCCACTTTAACATATATTGGGAATAAGGATATAACATACGTGGGGAGTGACCTAGTACACTGTTAGGCGATACTAATTACCCTAAATGTATTGACTTTTCCATCTTCCAACCTCTTCTGACTTTTTACAAGTACCCCTTGTCAAATCTTGGAAGATATATGATTAGCTTCCGAGTTCAAATAAGTAGAAGGAAGAGTTTCCACATCACAACCCAAAACATCAACATTTGTCACTTGACTGAAAATAGCAAGGCCTCCTCTGATTGATTGATATGCAGTCCAAACACTGAATCACAAAAAGTGAGTACCAATGGTGGTGTTCAAGCATTCTATTGAAGAATCATACATCACAAGAGTATCATGATCTTATAGAAAACAGATCAGGGCCAAATACACCCATGTACTATCAAAAATAGTTTAAATATACCCCTCGTTTGAGTTTCGGTGCAAATATACCCCGCCCGTTATATTTACGGTCCAAATATGTCCCTCCCGTTATACTTACAGTCCAAATATACCACTCCTGTTATACTTAAGATCCAAATATACCCCTCACATTAAACTTTTACAGTGATTTACCCTTATTTTTAAGGGATGAGCACGTGGCGAGCTTAGAAACAAATAACACATCCCCAATTTTAAATACCTGGTTCACTTTACGAAACTATGGGTTTAACCATCCCGACCCATTCACTTTCCAGCAATTGAACCTGTCCAAAGAGTCTACTACTTACTGTTCAGAAATGCTATGTGGAAATCGCCAGGCAGGTTAATGATAAACTTGCGAAAATAGATCTTTATTTTCTGAAGCTTGCAGATGCCATGATCACTTGGCTTGGGATGAGATTAGTCCTGCTACTAAAGACTCTGCCTAAGTTCCCAATGCTACTTCAAACAAAATATCTCATAGTTATTTGTGCCTTATGTGTATTTGCAGTATTTTTTACCTTTGGGTTTATATGATTCTGTCATCTGTGTACTTTTACATATTTTTTTTCAACTTTGAGTTGTCTTCTTTTCATCTGACCCCACGTTATACCTAGAGATCTCCCAAAAGTCTTTAGTTTCTGTTTTCCTGAGCCTAAAATTATCCTTTTTCCCATAGTTGCGTCTGTACTGTTTTGCAGTGTTGGCCATTTTCATTGCAGTATTAATGTTTTGTTTGCTGTGCAATTTCTAGTTTCTTCTGAACAGCTATTTTCTTGCTTCTGTTTTCATCATCATCAGTCGCCACTTCTCCATTTGATTCTTCATCTAAAAAGCATTGTACCCCTCTTCTTATTCCCCTCTATTTAATATCAGTTGCTATTATCTTGTTTGATAAGTCATGCACCCAGTTGATGCTGCCTATTTAGTTTCTTTTCCCGGGGACATCTTTTCCTTCCTGTAAACCACAATTTCTTTCCTGAAGAAATTTTTAGAATTGGTTCTGGCTAATTCTGTTCTGTCCAAGAAAAGAAGGGGAAATCTCCCAGCATTCAGTTTTTGGCCTTACCAGCTTCTTTTCCAACTTACTGGCCACATGTTCTTTCCCTTTTAAGAATTGCTGACCATTATCTCCTATTATCTCTGTGGTTTTCCGTTAAAAGTAACTGCTTGTCAGGACATGCTTCGTGCACAGAGCTGTTGCCTTTTGGGTGGGGACATGCTTTGTGCCCGTGGTGCTAATACTGTCCCACAGCGTCTTTAGTATCACATTTTCAACTCCCAATTCTAATTCTATAAGTTGCCTATCTTTGCCTCTTTTAATTGATCTTGTGTTGGGCTCTGAATCTAATTCTCTGGGCTTTGCTTTAGATTATGATAAGCAGTAATCATTATTACTACTGTCTCATATTCTACGTAGCAGTAGACATGATTCTTATTACATGAAATCTTCCTAATTTTTCTTTTATATGATGTTAATTGTAGGTTGCGCCATAGAGGACCTGACTGGAGTGGACTGCATAGCCATGAGGACTGTTACCTTGCTCATCAACGATTGGCAATAGTAGACCCAACTTCAGGAGATCAACCGTTGTATAATGAGGACAAGACCATTGTTGTTGCGGTAGGAAAATATTTACTATATACTTATATACTTCAATACCACAACAGTAAATGGTCTGTGGACAGTTTGTCTTTTGATTTTCTATAGTACAAGCTTTTCTTGTAGGGTAAAGTTTCTCTACTTTACAGTGAACACAGGAACTTAGAAATAAAGGATTTGTGAAGAAACTTTTGGTTCTTCACTTTAGCGGATTATGTGGTGCACAATGGCAGTCAATTAAACATCAGTTAAGAACAATTCTAGGAGCTTTGAACTCAAAGAACTGAGAGACTAATTCAGGGCTTGGAGCCGAGATATATTAGAAGAAGGAGAAATGTATTATCTCAACTGTAATCCTTTACATGGTATATATGGATATATTCCATAACTAAAATCAACTGCTACTTACAATTCCCAACTGAATGTTATAACAGAATTGTAACTAACTAATGAACCCCAACTTACTATTGGACATCGTCCACTAATTATCTTGTCAGATTTGTAGACTTGCATCAATATGTGATAAGTAACCAGGCGATTGACTAGATGAACATAGAGAGTCTACCGTTATTTGTATTTACTCTCAGTTTATTGAAAGATCTGTGGGTCACATAGTAGTACAACTTTTCTACGCAACGTAAGTCAAATGTTGATGGTTTGATCTTTGTAGATCCAATGATATCATTTGGGTTTGGATAAAGGAATGATATATATGATTTCATTTTTTGGGTTGAAATTCAAAAGATAAATGTGTAGCCAAAAAAACTTACAGAACATACAATTCTGTCATTTGTTGTGACCATATGATAAAGTGCAATGGTGGTATGAGTATTACTATGACACTGATGCGTTCTTTTTATTTTTGATGTTCTAGATAAGCTTCTCTTGTCAAATAGCTAAAAGCTATTATTCACACATTTCAGGAGCCTTCTTTGCTGGGCTACTGTGACCTTCTCCCATAGCTTGATTTTGATAAATGTTTCTTCCATAAGATTGATATCTGCTCCTTTCGGTTTTAGGTAAATGGAGAGATCTACAACCATAAGGAATTACGGGAGAAACTGAAGTCCCATCAGTTTCGAACTGAAAGTGATTGTGAAGTTATTGCCCATCTTGTAAGTACTTCAAGAATGTATTTAGTGGAATGTACTGACTTCTCAGTTTTTGCTGGTAGAACGATTTCAAAACACCAGCACTCAAAGTTTTCATCAATAGAGAAAAAATGAATTCTAGTAAGAAAATAAGGTTTCCTGCCATAATTTCTTTCTTATTGTGTATGTACTGTGGGATATACCTCTGGCAGTATGAAGAATATGGAGAAAACTTCGTTGACATGTTGGATGGGATGTTCTCTTTTGTTCTTCTTGATACCCGGGATAAAAGTTTCATCGCTGCTCGGGATGCCATTGGCATTACACCCCTTTATATGGGGTGGGGTCTTGATGGTATGTTGCTTTTTAGTATAATTATTTTTTGGCATATTACCCTTATGATAAACGTTATGTGAACTCCCTTTGTTGTTTACTTGTGATTTTACCTGCTATAATTCTGATAGATACTGTCTCACAAGCAAATGATGTATAATAGGACCCTATCATATATGTAGTTCAGTAGTTCTTGGTGATCAACACCGTAACAAGAACATCTAAATTTGCTAGTATAACTCAAGCTTCAGCTAGTCTATTACTCCAGCGAACAACACATACATCATTCACAGTAACATTTACTTAAGCCTAGCTATACAATGATGTGAGGTACGACTAATAAAATCCGCCCATCATTTATAAGAGAAATGGCTAGCTAGATATTGTTTGTTTTTGAAGTCTTATAAGAAGACAACAGTGTTGCCGGCTTAATTACTTGATGGGAAATTTTAGTGACATAAATCTGGTTTAGGGACATGTTTGATTTGGAGAAACATAGAAGAGAAAAATTGATTAAGATATGTCAATTCAAAGGGATCAATAGGTGTGGTATTCGATTTAGAAACTATAGGCTAAGAAGTTTTTTTTGGCTGAAGTTTTTGAGCTTGGGAGACACCTTATTCCTTTTCCAATTGTCACATAGCTGAAAACAGATTGTATTCTTTAAGGGCAGTGCTATAGATGAAAAAGGGCTGCCTACTCATTGATTGTTGCACATTCAGGACGGGTTATCTAAAGCTGAGGGGTAAGAAAAGGATTTGAGTGGTGAGTACGATAGGTTTCTTGGCCATCCATGTTGCCATGGACTTGTTTCTTGAATTGTGATATTTGTAGTGGATTCTTGAACGTGATTTTCAACTTGATCCAACGTGCTAATAGTGCACAAGCCTCTCTCAGCATCAACACTTCTCGTCTACACCATAGCATGCCAGCCTTGGGTATAGCACAATGGTGTTGATCTTGGCTTTGTCATCCCTCGTCTTTCCAGGGTAGAGATAGTTCTCCAAGTGTCAAAAAAGTTCTCTACTTTGTGCATCACAAGCCCTTTTGAACATTGGTGGCTTGGGAGCCTCGATCTTAGTCCCACTCTTCACTATAGCGTATTTGGCTGTCCCAGTCGCCAACACGATCTGCTCTTCGAGTGCCTCCATCTTTGCCTTCATGGCATTGATCCATGAGTTTGCACTCTAAGGTAGCAAAGGTCTGCATCATCTTGGTCTTTATACGCCCATCCAAGTCATCTCGAATCCTCTCGATGTTTTCAAGAGTATGCCCTACCTACAATGTTTGTTTTGATTGTTACTTAAAACGTATTGTACTATATTGCTAAATTTCGTTGTTATGTAACAATGAGAACCCCTATTTAATGGAACAACCGATTTGATGTGTTCCCATTGTTACTTAATTTCTTTGTTCAATTATATCTTAACATAATATTTCAAAATACTATTTTACCTTTTACCTTAATTATTTAAATCTAGTAAAACCGCCTACCCTAGAATAATTAAGGATTTAAGTAAATTTATAAATTACAATACAGTGCGATACAATCAAACTAAACAATTAAAATGTTACTAAACAAAAAAAAACAATACAATCTAGCCAAACATTGTATCTACCATACAATACAGTACAATAGAGTACGATACAATACAATACATTATTAAACAATGGGTAACACTGATCTAAACAAAGTGTTAGAGTGTCTTCTATCTTCCCTAAGCATTGGCCAAATATCTCAACTGCGTCTATCCCTGCATTAACCTTTGTAACCCACTCCTTATTGAGCGTGGCCTCCTTGGATAGGACCTCCACATCATCCCGCTCACCAGTTCTTGGGATGTAAGCCCTTTATTCAACTCTACCTCGAGTGGCACCTCTTGGTTTATGTTGGCAACATTCCTCCTTTTGTTATTACCTTTCGTGTCATCGGAATCTTGGGTGACATTGCATGGGGTTGGGTGTTAGCAACATTGATTTTTTCGTTGTTCGCCATTCCCTTAGTTGGAACCTAGCTTTGATTCTACACTGTCACGTCCTTAGTCTTCAACTAAGCACACATGCGACACTTGACAACTTGCTCACAATGTTGCTATGCCAAGTCAGTCTAAGAAGCTAGGAATAGCTAAGAGAGTGGTAGAGAGAACACAAGAGAATTGCAAGTGGGAATTGTATTGTAGGAAACTTGATTGATTTTTGCTTGATGATTTTACTAATGAAATATCCCTCTATTTATACTACTCATTTAGGGCTTATATGCAATTAATAATTACCACACAAGTCCTTTCATAGTTACAAGTATGTCACCTTCACTAGAACTTTCTACATGCCTAGAATATTCTAAGGCCTTTCTAGAATTCTTCCTTGATATTCCATAAGAATCTTGAGCCTTTCCAAGAGACTCCCCATGGTTCTAGAATCTTCTCACAAATGCTAGCATCTTTCTTATGTAAGATACCACATGGCAAAAAAGTTGTGCCAAGGTGTGCTTGTATGGTAGGTAATCACATTTAACTGTAATAACAGACACAAATGTACCATATTTATTGTACTTCAAGAAGAGCAATAAATGAGGGTAGTTAAATTTCTGCATCTCCAAATTTTGAAAGATTTCCTTTTGAATTCTGATGCTTCTTTGAGTCTTCTGCAGAGCTACACTAGAGAAACTCTACTCATTTTATTCTTGTCATGTATAACCTCACACGCTCCGCCCATTCAAACCAAGAATCTGAGGCTAGGTTAGTATCAGTCAAGTCATAGGACTTTCCCCTAATCTGAAAAAGATTTTGTTCTCCATCCTTTCCACAGGGAGAGAGAGAGAATTTTTTTTTGAGAAAGGTAACTTGTATTATAAACAAAAGAATACACAAGGATTCAACAATGTTAGAGGGATTTTGAGCTTGTTTGAGTGGCTATCAGAAATAGAAAGGCTCAAAGGATGATCTTAGATGCTTCTATAAAAACGAACAAGTTTGAAGAAGAAAGACTGCAATGGTTTCGAGGAGAGAGTCGTTTTCAGAGATTTTGGGCGATGTTGGGAGGGTTTTGAGGAAAGAAAAAATGAACGGGTCATGTTGGAAAAAGGTTTTGGACGTCGGGTGAAAAGGTCGGAGGAGAGAGAATGACGAAAAAGAGAAGATTAGTGCTTACCTTGAAGCTCATTCCTGGGCTTATCTTTTAATTTTCAAAGTAAAAAAGAGAAATAAATTCTAGTTGTTTCAAGTGTAAAAACTGTTAAGAATATAATTATGTAAATGATACTATGCTCTCTCTTACAACTTAAACATTTAGATGAGATGATCACTCTTCAACTGTTCAACATGGTATCAAAGCAAGCAGAAGTCCTGGGTTTGATTCTCACTGCCACTCGTTGTCTCGTTTGGACAATGAAAAGAATCAGGTCTTCACATGATTGTTGAGAATATAATTAGCTTCATATAAGTGTGCTCTTTCTAATAGCTTAAGTTTTTAGATGAAATGAAACTATTTTTAATAATGGTTACATTTCAAAGTTAGAGCTGGTAAAGGAAAACATAATACGTTTTCTAGGATATCAAAATATGAAATCCCCTACAACAAAACTTATAGGCATTCTATGATATCAGTATGGAGTCACTATCATTTACAGGACTTCATTTACACCAAAAAAGAAAAAGCTAAATTTTCATTTATCTGGATAGAGTTCCTTTTGTCCTCAAAACACATGAAGTTCCTTTCCTTCCAGACTGTCCACCATATGCATGCTGGAATCATTTCTTTTGACTAACACCACCAACTACTCCACCCCAAGAATCTCAAAAGGTCAACTGATACCTTTGGCATAATCCAATTCATCTTAACAATACTCAGGAACACGTGCCATAATTGAGAAGTAATAACACTGTACTGTAGGAATAAATGTGTATTATCTTCAGCCTCCCTTTCACATAGACAGCACCTGGAACTCAGCCGGTAACCCCTCCTTAAATTTTCATGAGTCAAACGGACTTGTCTGGCCTCTAGCCATACAAAACATAGCACCTTAGAAGGTGCATTCATCTTACAGATCTGTTTCTAGGGTCATCTTCTGTCATCCTGTCTATTGCCCATCAGAATCTTGTAGGCTGATTTAACTGTTAACATCCTCACACTTGACCCTTTCCATACCAAGGAATCTTCATAATCTGTGAAGCCTTGCACCTGATACAGTTGACTTTAATGATTCAGCAACTCTATCCACTTCTTAACCATTTAGTAATCTTCTAAAACTCAAATTCCAGCTTTGATGCCCATTACAGATGAAATGATCACACTCTTCAACACCATCAAATGCACAAGAGCTGAAAAACAATTGCTTGTATATGATGGTTTTATGGTGCAAATTTCATGATGTACACGACATTCACAGAATGAGAGATTTCATTGCACTCTGCAGAAGGACCTAGAGACCACGATAATCCCCTTCTTTTGTTTTTGTGTAGGGATATCTCATTTTTGTACAGTCCAATCACCTTCTTGGTGTTTGGATTTACTCCATTTGTATATCTTTAGCTTACCGATAAAAGAAATAATAGAAAAGAGGCTGGAAAGTTCTTCTTCTGACATGCCAAGGGTTCTCAACCATTTTACAGTTAGCGAGACAAGTGAAAATAATGAAAAATACAAATCAAAAGGGTTATCTAGTTGACAACATGAGAACCCCATCAGTTTTTTTAGCTCAAAAGATTTTCCATTCTTGCTGATAAAGGTAGAAGAACAATCTCCTACTCAATCAAAGGAGGTTCTCTCAATAGAGTTAGAGGTATCAACAGAACCAAACAGGAGCTGGTATATATGGATCAGGTTTTGATGAAGGGAGAGCTGTGTTTGGGGAACACCAGGAGCTCAAGTACTTCTGCTTAGTTCATAGACATTTTATGTGATGGATATGACGGAAATATATTTGAGTGACAAGAATAGACCAGGACTAGAGGGATAGCATAACAGGTTTGGGAAGGCAAGGCTTGGAAACAAAGGGATAAAGGTGTTGGAATAGAAGGTTTTGATATCATTTTTAGCTTATGAGCAAATTATGGGGTAGTAGTGGAGTCAGAGGGGAAAGAGATCTACCAATAGCACATCCTGTATATGCAGTTAGAAACACTACCTAGAAATGCTGGAGGGACTACTACACGATCATGATAAGCATGTAAGGGTGTGTGGCAGTTCCAATTGGATTGTGGATTCATGGGCTATGCTGGAATGAAACTTTCTTGCCTAGCTTCGACATCAGCTTAACTGAGCACCTTAGGAAGACAGAAACGTAGGACAGATTTAATAGTGATGATATTTTCTGCTTACAAATGTTGTTGATAAGGGAAAACCATAAATTGCACAGAAATAACTCTCGTAAACCTGAATGCTTTTAAAAATACTTTACAATGTATATGACTATATGTGGTACATCTATCTGGTGAGAGACACTAGTACATTCCATCTATATATGTGCTCAGCCCATGTATGCATTGGACTACAATTTGTATTTATATGGATTGCAAAAGCCCAGCTGGTTCTGAGCCGCTTCTGAATGCCTTAAGTAGAAAACAAAATGTTTTTTTAGTGTTACGTATTTCACTTCAAAGGAAAAGGAGAAACATTTGGTAGAATGTAGCTCTTTGATTTGGAACCTTACACATTGAAGTTGACAGCCATGTTTGCTTCAATTCGATTTGTTCAGTAGTCAGTTAAAACAACTGTTTATGTGCATTGACTTTTTTTTTGTTCCCCATCCGGTGTCCGGTACCCACATTGAAGCCGGACTAAATCCGGATTCGGGCTGGGAAGTCCCACATTGGGGAGAAACATTAGGTAGAATGTAGCTCTTTGACTTGGAACTTTACACATTGAAGTTGACAGCCATGTTTGTTTCAATTCGAGTTGTTTTAAGTAGTCAGTCAAACAATTGTTTATGTAAATTCACTTTTTTTTTGTTTCCCATCCGGTGTATGGTATCCACTTTGGAGCCCGACTAAATCCGGATTCGGATCGGGAAGTCCCACATTGTGGAGTAAAACACTCCCTAACAAAGGCGACTCCGTACCTAAGGGGACTCGAACCTGAGACCTCTTGGTTAAGTATGAAGGAGTACTTACCACTCCACCACAACCCTTGTTAGTGTTTATGTACATTCACATTATTTCCCATGTCCATAATTTTATCTTTCCACAATTTGCTTTCAGCTCTTTCTGCATATAGAGAAAATAACAAAAGTTTCCATTGGATCATGTATATAGACTGCACATGTTCAAATTTTAAACAACTTTGCATATGCATATGCAATCAATGACTTGAAATAACTATTACTTTTATGCAGGATCCATATGGTTTTCCTCGGAGATGAAAGCCTTAAGTGATGATTGTGAACGATTTGTTAGCTTCCTTCCCGGTCATATTTATTCAAGCAAAAATGGTATGCTCATCTCTGAGCCTGTATTTCATTCATCTTGACCTATTTATTTCATTTTTTGGATCCCGTTGAAAACAGTCTTAAATCTCATAATGCTGGTGTAATTATTTATCTATTGATCAACCAAAAGAGTGAGATCTACATGTTATTGTTGCGCAAAATTGCTTCTAGGTGATTTCCTCCCATCTATCCAAGCCTTGGTGTAGAGAGTACCATGTACCCGTGTTGTTAGGAGGTAGCAAGTACCCTGTGAAAAGTAGTCGAGGTGCACACAAAGCCTGGTTATCACAATTATAAAAAAATAAAAGAATTGCTTTTAGGAATGCAGCTTCAATCTTGAGGAGTCTTTTGGGATGCTGGATGTACTTTTAGTAATATTAATTGACATGAATCCTTTTGTTTTGTACTTGTGTACTAGCCAAGCAGATTTATTTTACTTTCGAAACCCCTCTATGGATTAAAAGAAAATGGCAAGTGTAATATAATGTTACTAATGGTCCCTTTTTATGTGTTTGCAGTGTTTACGTTAAAATAAGAACCTCAATAAGTAGGAGCTATTGGGTTCTTAAACTAGAGGAGCCCGTAGATAAAAGCCAAATAAAGTAGTATTTCTATGACTTCTTTATTTTGTACAGTGTAGAAGTTTGAGAATATTCTGTTACTAATATTATACATACACTAATCCTTGAAGAATTGCAACCGTTTCAACTTTCATCATATTTACTCTACCAGTATTGATATAATATTCTGGCCATATTAACATCTTAAACTCTATGTCCGATCCATACCGTCATGTAAAATGAAAAGAAGTCGTATATAATGAAATGATGGGAGTACTCACCAATTTTAGTTTTGCATGGATAAAAAGTGAACCACGGTTTTTGGTGTGAAGGAAATATTCAAAATCATCATTGTTATCAAAGTCATCCTTTGCTTTCAAGAACTATTCATTCTATCTCTTAAATAAATTATGTGCAGGAGGACTTAGAAGATGGTACAACCCACCATGGTTTTCGGAAACCATTCCTTCTACTCCATATGATCCCCTTGTCTTACGGAAGGCTTTTGAGAAGGTCAGTTTTTTCTAGATGTTGCATAAAAAATTGTGGCTCAACCATGACATACTCCCCGGACATGTATTTGACATAGCCCTCTAAACTTTAAAAGTAAGCACCTTTCACTTTGTTCTATTTTGAACGTTGTCTTGGACTCTTTCAGGACACATATTCCCTTGACTGATTGGAGAGAAGATATCCTTGATGTAGCTGTCATTTTGATTGTCCTCTTGTTTGTAGTACTTCTCCCTACTAAATAAAGCCTGTGTTTGTCCAAAGAAAATGATAAAATATCAAAGCAACTTGTTGATGGATGTGAACTGTGGAGTGTGCATGATTTTTGGTCTCAGTCATTATCATATCCTTCGACCTTCAAATGCAAATTTTACAACTTTGCATAAAATGTGTCAATAGCTTTTCCTGGGATTTTCCCTTTTTATGTACCCAGTCTCCACTATCTGTCTGTTACTACTGATTTAGTGCATGAAATGCTATTCTTTCTAATCGTAATTTGTAGCTTTCATTAGTAAATAGCAAAAAGAGAATGCTAGGAGCAGTTAAAATAAAAAATAGAAAGCCATTACAAGCTGCGTAATGTGCTTAACAAAATCAGCCAAGATATCATTTACAGCTATTATGGCCATGTTGCACCAAAATCTAAGCTAAGATATACAGCGACCTTTAATTTTTGGTGAGGATTCTTCTTTGTTTCCAAAATATTTCTTGTTTCTTTCCAGCCAAATCCACTAAAAGGTTGTTGGAACTGTTTCAGAGATGGTATGAAGCCTTGTGAATATCCTTTCTGTGCTAACCTTGAAGGAACTGTAGAGTAATTTTTAGCCCACTTAGGCCCAGATACTGAAAAAGAAATCCCATTGTTGAGAGATGAACTTTACAATGCAGAAACACGTGGTTGATGCCCACATTAAATGCTAATCTTATTCTGCACATTTACTTTATGCAGGCTGTAGTTAAGAGACTCATGACGGATGTACCATTTGGTGTGCTTCTCTCTGGCGGACTGGATTCTTCACTTGTTGCTGCAGTGGCTAGCCGCTATTTGGCTGATACAGATGCCGGTCGACAATGGGGATCCCAGTTGCATACGTTTTGCGTAGGCTTGAAGGTGATGATGCTTCCTTAGTGAACATGCTCTGTTTTAGAAATTGTCAACTGAATTATCACATAGAGGTTCTGGACCATGATCACTGTCCCTTTTACATGTTTCATACATAGGATTTGCGAAGTAGTAGCAAAATGGAAATTTTCTATATAAGATACCAATTACCTTCTCAGGAATGAATCTTACCATTAGGATTTGTCGATTTCCTTTTGATATCGTGGTTAATTCTGATATGACCTTACTCAATCCTGCCTTTTATTTTCTTCTTTTAGTTTATATCTCTTGTTGCAGTTATATCTCTCTTTTTTTCATGTCTTGCTTACTTTTGGAGAACTGAAATTTAACTCCAGTTGCAAGGTTTGGTACTATTAACTTGCTTATTTCTTTCATCATTGGTCCTGAAAATGTGCTACTATCTTGTATATGCGGGATCTTGGAATCTTCCCAGTGTGAGTAACTTCAAATGATAATCAGAACTGATCACAGTCATTTCTCTTAACTAAATATACATCTGTTCGAAATTTCTTGTTGCTGCACTTTGATTACCTGTGCTAAACGCTTTCAACACTTCTCATGAGGCCAAATTTGGCAGTAAGTGTACGTAAAACCGTTTAGTGTACCTTATTCAGTAGGTCTGTTATTGTCCATAATCACACACAAGATTCAGAGTGTTTTTAGGAAGCCTATTGGTGTGATTGGTGGATTTCTGAGATGAGTACTTTATCCATCTTTGTAGTGCATTGTTTCTTTTCTTTTGTTTATAATTTGCTGTGTCATTGTAATTTAGGTTGACTTTTCTTTGACTTTAGGGTTCTCCTGATCTGAAAGCTGCCAGAGAGGTGGCAGACTACATTGGAACTCGTCACCATGAGTTTCACTTTACAGTGCAGGTAGCTTTTCCTAATGACGTACCAAAGCTGATTTCCTTTTCCGGAGCATAACCACTTAAGTCAAATTAACTATATACTTGTTTGCATTGCTATGTCAGGAAGGAATTGATGCCTTAGAGGAAGTCATATATCATGTTGAAACATATGATGTGACCACTATCAGAGCCAGTACACCAATGTTTCTCATGTCTCGGAAGATAAAGTCATTGGGTGTGAAAATGGTTTTATCAGGTGAAGGTTCTGATGAAATTTTTGGTGGTTATTTATATTTCCACAAGGCACCCAACAAAGAGGAGTTTCACCAAGAAACTTGTAGAAAGGTGGATCACATTATCAATTTTGCATTCATTCAGGCTTTATTGGAAGTAACTGCATTTCTATTAGAATTATCTTTGAACTATTTCTAGCTCTGATGGATGCTTTGATGTTAATCCAGATTAAAGCACTTCATCTTTATGATTGCTTGAGGGCCAATAAATCTACTTCAGCTTGGGGTGTTGAAGCTCGTGTACCTTTCTTGGATAAAGAATTCATCAATATTGCAATGAACATTGATCCGGAATGGAAAATGGTAATTGCTTCCCCTCTTAAATCTCTAACCCACCTTCACCCAACCATTAAATCTAGATTAACAAAGACCAAGAAAGAAAGATAAATCCTGTTCTTCCTTCAAGGAACAATAAAATGACATCTTACATAAAAAAATGTCAAAAGATTACTGCAAGTTATGTAGAAAAACAGTCTTCAACGTCGTGGTAGACCAGGGTTCAAATCTCAAGAAAAAAAATGTTATGTAATTTTTCTCATATGTTTAAGCCTTGATGCAGAGTTACCTAGTAAATGAGCTACTGAGAAGTTGCAAGTACTTGGTGGATTAGTTGAGGTGCACACAAGTTGACTGAACCATTCTTCATAGAGACAAGTTCAATCTTGTTTTATCATGAGTTTATGTTGTGTTGACTTTCCTGTGTTTATAAATAGATGAGCACATTTCTGGAGCATGATTTAATTTATTTCGCTCTTTGAGGTTTCTGAAGTTATTTCTAAACTCAAGCTTGCTGCGACTTATGTTAGGTCTAGAGAATTCTGCCAGGCAACAAATGGAATGTACATTCAAGTATTTATCTCCTTATTAGAAGTCCAGTGTTACTTGAACGGATCTGATGTATGGGATACAATATAGCTTCATACACATAACCTCATTATAATGTTGCTGATTTCATCTTTACATCTAGTATGATCCTACAATTTAATATATCTCTGTACAGTGACTATTATATACTGAAAATTCTTTCTTGAAACATTACAGATCCGACCTGACCTCGGAAGAATAGAAAAGTGGGTTGTACGTAATGCTTTTGACGATGATCAGAATCCTTATCTGCCAAAGGTTTGTTAGTTTTCTTCTATAAGATCCAAATTCAAAATTTTTTATTCATTTGCATAATAAATAGGCAAGCAGACTCCTTGTTAAAACAAAAAATAAAGAAGCAAGCAAAACCCAAATACGTTGTGTAATTGTGCACAGATGTGTATTGTATGTGTCACATACAAGGGTATCATATGTTCAAAAATCCCAACTTACTCATGCATGTGTAAGACCTATATATATATATATATATCAGTTCAAAGCCATAAATGACAATAAAAAGACATTATGATCAAGTTGTTGAGTCTCCTCTGTTTTCTTTTTTAGCATATTTTGTATAGGCAGAAGGAACAGTTCAGTGATGGAGTTGGCTACAGTTGGATTGATGGCTTGAAGGATCACGCAAACAGTCAAGTGAGCTTTTTTGTTCCTTTTCTCTTCGCTCTTTTTCCAATCCTTCTTCCTTCCTTTTGTGGTAATGCTGAACACATATTGTACATTTGGTCCAGGTTTCTGATTCTATGTTAGCGAATGCAAGTTTTGTTTACCCTCATAACACACCCACAACCAAGGAAGGGTACTACTATAGAACTATTTTCGAGCGATATTTCCCCAAGGTGGGTCTTTCATGTCTCTTTTCTTTATTATTCATGTACAGTTTATGATACTTTCTCCCAAATAATATTTTCTTTTCAATATTACTTGAGCCATTAACAAGATTGCTTCTATCTTGGTATTTGTTGATTAAGGGGTAATATCATAATTTTAATTGTTCTTTGGAGCAGGCTGCTGCAAGAGAAACTGTTCCTGGTGGTCCAAGTGTGGCCTGCAGCACTGCAAAAGCAGTAGAATGGGATGCCGCTTGGTCCAAGAATCTAGATCCATCCGGTCGAGCTGCTCTCGGTGTTCATGAAGCTGCTTATGAGGTTAAAGAACTATGAAGTTGATAAAGCTGTAGTAGCTGTTTGATTGTATATCTTCATTCAAAAACCTGACTTGTTCCACATTTGACTTCTTTTACGAGTTTGAATTCTTTGCTTCTGGTTTTACAATTACCAAAGTTTATTCTACTTGAGAAGAAATATGACGAATATGTGTTATTCATGACATGAAAGCAA</genome_strand>
        <mrna_strand>GGTAACCAGTAACCGCAATCACTTTTTCTTCATTTCAGAAGAAGCGAGAAAAAAAAATTGCGGACAATGTGTGGAATACTTGCAATTTTCGGTTGCACTGATAATTCTCATGCCAAGCGTTCAAGAGTAATCGAACTATCAAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCGCCATAGAGGACCTGACTGGAGTGGACTGCATAGCCATGAGGACTGTTACCTTGCTCATCAACGATTGGCAATAGTAGACCCAACTTCAGGAGATCAACCGTTGTATAATGAGGACAAGACCATTGTTGTTGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGGAGAGATCTACAACCATAAGGAATTACGGGAGAAACTGAAGTCCCATCAGTTTCGAACTGAAAGTGATTGTGAAGTTATTGCCCATCTT............................................................................................................................................................................................TATGAAGAATATGGAGAAAACTTCGTTGACATGTTGGATGGGATGTTCTCTTTTGTTCTTCTTGATACCCGGGATAAAAGTTTCATCGCTGCTCGGGATGCCATTGGCATTACACCCCTTTATATGGGGTGGGGTCTTGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCATATGGTTTTCCTCGGAGATGAAAGCCTTAAGTGATGATTGTGAACGATTTGTTAGCTTCCTTCCCGGTCATATTTATTCAAGCAAAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACTTAGAAGATGGTACAACCCACCATGGTTTTCGGAAACCATTCCTTCTACTCCATATGATCCCCTTGTCTTACGGAAGGCTTTTGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTAGTTAAGAGACTCATGACGGATGTACCATTTGGTGTGCTTCTCTCTGGCGGACTGGATTCTTCACTTGTTGCTGCAGTGGCTAGCCGCTATTTGGCTGATACAGATGCCGGTCGACAATGGGGATCCCAGTTGCATACGTTTTGCGTAGGCTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTCCTGATCTGAAAGCTGCCAGAGAGGTGGCAGACTACATTGGAACTCGTCACCATGAGTTTCACTTTACAGTGCAG..................................................................................................GAAGGAATTGATGCCTTAGAGGAAGTCATATATCATGTTGAAACATATGATGTGACCACTATCAGAGCCAGTACACCAATGTTTCTCATGTCTCGGAAGATAAAGTCATTGGGTGTGAAAATGGTTTTATCAGGTGAAGGTTCTGATGAAATTTTTGGTGGTTATTTATATTTCCACAAGGCACCCAACAAAGAGGAGTTTCACCAAGAAACTTGTAGAAAG....................................................................................................................ATTAAAGCACTTCATCTTTATGATTGCTTGAGGGCCAATAAATCTACTTCAGCTTGGGGTGTTGAAGCTCGTGTACCTTTCTTGGATAAAGAATTCATCAATATTGCAATGAACATTGATCCGGAATGGAAAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGACCTGACCTCGGAAGAATAGAAAAGTGGGTTGTACGTAATGCTTTTGACGATGATCAGAATCCTTATCTGCCAAAG..................................................................................................................................................................................................................................................................................................................CATATTTTGTATAGGCAGAAGGAACAGTTCAGTGATGGAGTTGGCTACAGTTGGATTGATGGCTTGAAGGATCACGCAAACAGTCAA...............................................................................................GTTTCTGATTCTATGTTAGCGAATGCAAGTTTTGTTTACCCTCATAACACACCCACAACCAAGGAAGGGTACTACTATAGAACTATTTTCGAGCGATATTTCCCCAAG........................................................................................................................................................................GCTGCTGCAAGAGAAACTGTTCCTGGTGGTCCAAGTGTGGCCTGCAGCACTGCAAAAGCAGTAGAATGGGATGCCGCTTGGTCCAAGAATCTAGATCCATCCGGTCGAGCTGCTCTCGGTGTTCATGAAGCTGCTTATGAGGTTAAAGAACTATGAAGTTGATAAAGCTGTAGTAGCTGTTTGATTGTATATCTTCATTCAAAAACCTGACTTGTTCCACATTTGACTTCTTTTACGAGTTTGAATTCTTTGCTTCTGGTTTTACAATTACCAAAGTTTATTCTACTTGAGAAGAAATATGACGAATATGTGTTATCCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238902" ref_strand="+" ref_description="SGN-E238902 [cLEL-9-N22](-)">
      <seq>aaggaagggtactactatagaactattttcgagcgatatttccccaaggctgctgcaagagaaactgttcctggtggtccaagtgtggcctgcagcactgcaaaagcagtagaatgggatgccgcttggtccaagaatctagatccatccggtcgagctgctctcggtgttcatgaagctgcttatgaggttaaagaactatgaagttgataaagctgtagtagctgtttgattgtatatcttcattcaaaaacctgacttgttccacatttgacttcttttacgagtttgaattctttgcttctggttttacaattaccaaagtttattctacttgagaagaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="110352" stop="109229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110052" g_stop="110005" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110004" i_stop="109837" i_length="168">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109836" g_stop="109541" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="344" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="345" polyA_stop="364"/>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E238902" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110052" e_stop="110005"/>
          <exon e_start="109836" e_stop="109541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAGGGTACTACTATAGAACTATTTTCGAGCGATATTTCCCCAAGGTGGGTCTTTCATGTCTCTTTTCTTTATTATTCATGTACAGTTTATGATACTTTCTCCCAAATAATATTTTCTTTTCAATATTACTTGAGCCATTAACAAGATTGCTTCTATCTTGGTATTTGTTGATTAAGGGGTAATATCATAATTTTAATTGTTCTTTGGAGCAGGCTGCTGCAAGAGAAACTGTTCCTGGTGGTCCAAGTGTGGCCTGCAGCACTGCAAAAGCAGTAGAATGGGATGCCGCTTGGTCCAAGAATCTAGATCCATCCGGTCGAGCTGCTCTCGGTGTTCATGAAGCTGCTTATGAGGTTAAAGAACTATGAAGTTGATAAAGCTGTAGTAGCTGTTTGATTGTATATCTTCATTCAAAAACCTGACTTGTTCCACATTTGACTTCTTTTACGAGTTTGAATTCTTTGCTTCTGGTTTTACAATTACCAAAGTTTATTCTACTTGAGAAGAA</genome_strand>
        <mrna_strand>AAGGAAGGGTACTACTATAGAACTATTTTCGAGCGATATTTCCCCAAG........................................................................................................................................................................GCTGCTGCAAGAGAAACTGTTCCTGGTGGTCCAAGTGTGGCCTGCAGCACTGCAAAAGCAGTAGAATGGGATGCCGCTTGGTCCAAGAATCTAGATCCATCCGGTCGAGCTGCTCTCGGTGTTCATGAAGCTGCTTATGAGGTTAAAGAACTATGAAGTTGATAAAGCTGTAGTAGCTGTTTGATTGTATATCTTCATTCAAAAACCTGACTTGTTCCACATTTGACTTCTTTTACGAGTTTGAATTCTTTGCTTCTGGTTTTACAATTACCAAAGTTTATTCTACTTGAGAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238813" ref_strand="+" ref_description="SGN-E238813 [cLEL-9-N22](-)">
      <seq>gttcctggtggtccaagtgtggcctgcagcactgcaaaagcagtagaatgggatgccgcttggtccaagaatctagatccatccggtcgagctgctctcggtgttcatgaagctgcttatgaggttaaagaactatgaagttgataaagctgtagtagctgtttgattgtatatcttcattcaaaaacctgacttgttccacatttgacttcttttacgagtttgaattctttgcttctggttttacaattaccaaagtttattctacttgagaaccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="110118" stop="109229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109818" g_stop="109544" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="278" polyA_stop="298"/>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E238813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109818" e_stop="109544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTGGTGGTCCAAGTGTGGCCTGCAGCACTGCAAAAGCAGTAGAATGGGATGCCGCTTGGTCCAAGAATCTAGATCCATCCGGTCGAGCTGCTCTCGGTGTTCATGAAGCTGCTTATGAGGTTAAAGAACTATGAAGTTGATAAAGCTGTAGTAGCTGTTTGATTGTATATCTTCATTCAAAAACCTGACTTGTTCCACATTTGACTTCTTTTACGAGTTTGAATTCTTTGCTTCTGGTTTTACAATTACCAAAGTTTATTCTACTTGAGAA</genome_strand>
        <mrna_strand>GTTCCTGGTGGTCCAAGTGTGGCCTGCAGCACTGCAAAAGCAGTAGAATGGGATGCCGCTTGGTCCAAGAATCTAGATCCATCCGGTCGAGCTGCTCTCGGTGTTCATGAAGCTGCTTATGAGGTTAAAGAACTATGAAGTTGATAAAGCTGTAGTAGCTGTTTGATTGTATATCTTCATTCAAAAACCTGACTTGTTCCACATTTGACTTCTTTTACGAGTTTGAATTCTTTGCTTCTGGTTTTACAATTACCAAAGTTTATTCTACTTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703802" ref_strand="+" ref_description="SGN-E703802 [FA22CA08]">
      <seq>gagggatcccagttgcatacgttttgcgtaggcttgaagggttctcctgatctgaaagctgccagagaggtggcagactacattggaactcgtcaccatgagtttcactttacagtgcaggaaggaattgatgccttagaggaagtcatatatcatgttgaaacatatgatgtgaccactatcagagccagtacaccaatgtttctcatgtctcggaagataaagtcattgggtgtgaaaatggttttatcaggtgaaggttctgatgaaatttttggtggttatttatatttccacaaggcacccaacaaagaggagtttcaccaagaaacttgtagaaagattaaagcacttcatctttatgattgcttgagggccaataaatctacttcagcttggggtgttgaagctcgtgtacctttcttggataaagaattcatcaatattgcaatgaacattgatccggaatggaaaatgatccgacctgacctcggaagaatagaaaagtgggttgtacgtaatgcttttgacgatgatcagaatccttatctgccaaagcatattttgtataggcagaaggaacagttcagtgatggagttggctacagttggattgatggcttgaaggatcacgcaaacagtcaagtttctgattctatgttagcgaatgcaagttttgtttaccctcataacacacccacaaccaaggaagggtactactatagaactattttcgagcgatatttccccaaggctgctgcaagagaaactgttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="113214" stop="109513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112916" g_stop="112878" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112877" i_stop="112072" i_length="806">
            <donor d_prob="0.639" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112071" g_stop="111991" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="120" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111990" i_stop="111893" i_length="98">
            <donor d_prob="0.436" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111892" g_stop="111671" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="342" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111670" i_stop="111555" i_length="116">
            <donor d_prob="0.467" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111554" g_stop="111420" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="477" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111419" i_stop="110682" i_length="738">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110681" g_stop="110601" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="558" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110600" i_stop="110295" i_length="306">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="110294" g_stop="110208" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="645" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="110207" i_stop="110113" i_length="95">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="110112" g_stop="110005" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="753" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="110004" i_stop="109837" i_length="168">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="109836" g_stop="109813" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="777" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E703802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112916" e_stop="112878"/>
          <exon e_start="112071" e_stop="111991"/>
          <exon e_start="111892" e_stop="111671"/>
          <exon e_start="111554" e_stop="111420"/>
          <exon e_start="110681" e_stop="110601"/>
          <exon e_start="110294" e_stop="110208"/>
          <exon e_start="110112" e_stop="110005"/>
          <exon e_start="109836" e_stop="109813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGATCCCAGTTGCATACGTTTTGCGTAGGCTTGAAGGTGATGATGCTTCCTTAGTGAACATGCTCTGTTTTAGAAATTGTCAACTGAATTATCACATAGAGGTTCTGGACCATGATCACTGTCCCTTTTACATGTTTCATACATAGGATTTGCGAAGTAGTAGCAAAATGGAAATTTTCTATATAAGATACCAATTACCTTCTCAGGAATGAATCTTACCATTAGGATTTGTCGATTTCCTTTTGATATCGTGGTTAATTCTGATATGACCTTACTCAATCCTGCCTTTTATTTTCTTCTTTTAGTTTATATCTCTTGTTGCAGTTATATCTCTCTTTTTTTCATGTCTTGCTTACTTTTGGAGAACTGAAATTTAACTCCAGTTGCAAGGTTTGGTACTATTAACTTGCTTATTTCTTTCATCATTGGTCCTGAAAATGTGCTACTATCTTGTATATGCGGGATCTTGGAATCTTCCCAGTGTGAGTAACTTCAAATGATAATCAGAACTGATCACAGTCATTTCTCTTAACTAAATATACATCTGTTCGAAATTTCTTGTTGCTGCACTTTGATTACCTGTGCTAAACGCTTTCAACACTTCTCATGAGGCCAAATTTGGCAGTAAGTGTACGTAAAACCGTTTAGTGTACCTTATTCAGTAGGTCTGTTATTGTCCATAATCACACACAAGATTCAGAGTGTTTTTAGGAAGCCTATTGGTGTGATTGGTGGATTTCTGAGATGAGTACTTTATCCATCTTTGTAGTGCATTGTTTCTTTTCTTTTGTTTATAATTTGCTGTGTCATTGTAATTTAGGTTGACTTTTCTTTGACTTTAGGGTTCTCCTGATCTGAAAGCTGCCAGAGAGGTGGCAGACTACATTGGAACTCGTCACCATGAGTTTCACTTTACAGTGCAGGTAGCTTTTCCTAATGACGTACCAAAGCTGATTTCCTTTTCCGGAGCATAACCACTTAAGTCAAATTAACTATATACTTGTTTGCATTGCTATGTCAGGAAGGAATTGATGCCTTAGAGGAAGTCATATATCATGTTGAAACATATGATGTGACCACTATCAGAGCCAGTACACCAATGTTTCTCATGTCTCGGAAGATAAAGTCATTGGGTGTGAAAATGGTTTTATCAGGTGAAGGTTCTGATGAAATTTTTGGTGGTTATTTATATTTCCACAAGGCACCCAACAAAGAGGAGTTTCACCAAGAAACTTGTAGAAAGGTGGATCACATTATCAATTTTGCATTCATTCAGGCTTTATTGGAAGTAACTGCATTTCTATTAGAATTATCTTTGAACTATTTCTAGCTCTGATGGATGCTTTGATGTTAATCCAGATTAAAGCACTTCATCTTTATGATTGCTTGAGGGCCAATAAATCTACTTCAGCTTGGGGTGTTGAAGCTCGTGTACCTTTCTTGGATAAAGAATTCATCAATATTGCAATGAACATTGATCCGGAATGGAAAATGGTAATTGCTTCCCCTCTTAAATCTCTAACCCACCTTCACCCAACCATTAAATCTAGATTAACAAAGACCAAGAAAGAAAGATAAATCCTGTTCTTCCTTCAAGGAACAATAAAATGACATCTTACATAAAAAAATGTCAAAAGATTACTGCAAGTTATGTAGAAAAACAGTCTTCAACGTCGTGGTAGACCAGGGTTCAAATCTCAAGAAAAAAAATGTTATGTAATTTTTCTCATATGTTTAAGCCTTGATGCAGAGTTACCTAGTAAATGAGCTACTGAGAAGTTGCAAGTACTTGGTGGATTAGTTGAGGTGCACACAAGTTGACTGAACCATTCTTCATAGAGACAAGTTCAATCTTGTTTTATCATGAGTTTATGTTGTGTTGACTTTCCTGTGTTTATAAATAGATGAGCACATTTCTGGAGCATGATTTAATTTATTTCGCTCTTTGAGGTTTCTGAAGTTATTTCTAAACTCAAGCTTGCTGCGACTTATGTTAGGTCTAGAGAATTCTGCCAGGCAACAAATGGAATGTACATTCAAGTATTTATCTCCTTATTAGAAGTCCAGTGTTACTTGAACGGATCTGATGTATGGGATACAATATAGCTTCATACACATAACCTCATTATAATGTTGCTGATTTCATCTTTACATCTAGTATGATCCTACAATTTAATATATCTCTGTACAGTGACTATTATATACTGAAAATTCTTTCTTGAAACATTACAGATCCGACCTGACCTCGGAAGAATAGAAAAGTGGGTTGTACGTAATGCTTTTGACGATGATCAGAATCCTTATCTGCCAAAGGTTTGTTAGTTTTCTTCTATAAGATCCAAATTCAAAATTTTTTATTCATTTGCATAATAAATAGGCAAGCAGACTCCTTGTTAAAACAAAAAATAAAGAAGCAAGCAAAACCCAAATACGTTGTGTAATTGTGCACAGATGTGTATTGTATGTGTCACATACAAGGGTATCATATGTTCAAAAATCCCAACTTACTCATGCATGTGTAAGACCTATATATATATATATATATCAGTTCAAAGCCATAAATGACAATAAAAAGACATTATGATCAAGTTGTTGAGTCTCCTCTGTTTTCTTTTTTAGCATATTTTGTATAGGCAGAAGGAACAGTTCAGTGATGGAGTTGGCTACAGTTGGATTGATGGCTTGAAGGATCACGCAAACAGTCAAGTGAGCTTTTTTGTTCCTTTTCTCTTCGCTCTTTTTCCAATCCTTCTTCCTTCCTTTTGTGGTAATGCTGAACACATATTGTACATTTGGTCCAGGTTTCTGATTCTATGTTAGCGAATGCAAGTTTTGTTTACCCTCATAACACACCCACAACCAAGGAAGGGTACTACTATAGAACTATTTTCGAGCGATATTTCCCCAAGGTGGGTCTTTCATGTCTCTTTTCTTTATTATTCATGTACAGTTTATGATACTTTCTCCCAAATAATATTTTCTTTTCAATATTACTTGAGCCATTAACAAGATTGCTTCTATCTTGGTATTTGTTGATTAAGGGGTAATATCATAATTTTAATTGTTCTTTGGAGCAGGCTGCTGCAAGAGAAACTGTTCCT</genome_strand>
        <mrna_strand>GAGGGATCCCAGTTGCATACGTTTTGCGTAGGCTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCTCCTGATCTGAAAGCTGCCAGAGAGGTGGCAGACTACATTGGAACTCGTCACCATGAGTTTCACTTTACAGTGCAG..................................................................................................GAAGGAATTGATGCCTTAGAGGAAGTCATATATCATGTTGAAACATATGATGTGACCACTATCAGAGCCAGTACACCAATGTTTCTCATGTCTCGGAAGATAAAGTCATTGGGTGTGAAAATGGTTTTATCAGGTGAAGGTTCTGATGAAATTTTTGGTGGTTATTTATATTTCCACAAGGCACCCAACAAAGAGGAGTTTCACCAAGAAACTTGTAGAAAG....................................................................................................................ATTAAAGCACTTCATCTTTATGATTGCTTGAGGGCCAATAAATCTACTTCAGCTTGGGGTGTTGAAGCTCGTGTACCTTTCTTGGATAAAGAATTCATCAATATTGCAATGAACATTGATCCGGAATGGAAAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGACCTGACCTCGGAAGAATAGAAAAGTGGGTTGTACGTAATGCTTTTGACGATGATCAGAATCCTTATCTGCCAAAG..................................................................................................................................................................................................................................................................................................................CATATTTTGTATAGGCAGAAGGAACAGTTCAGTGATGGAGTTGGCTACAGTTGGATTGATGGCTTGAAGGATCACGCAAACAGTCAA...............................................................................................GTTTCTGATTCTATGTTAGCGAATGCAAGTTTTGTTTACCCTCATAACACACCCACAACCAAGGAAGGGTACTACTATAGAACTATTTTCGAGCGATATTTCCCCAAG........................................................................................................................................................................GCTGCTGCAAGAGAAACTGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238326" ref_strand="+" ref_description="SGN-E238326 [cLED-17-O13]">
      <seq>tacaccaatgtttctcatgtctcggaagataaagtcattgggtgtgaaaatggttttatcaggtgaaggttctgatgaaatttttggtggttatttatatttccacaaggcacccaacaaagaggagtttcaccaagaaacttgtagaaagattaaagcacttcatctttatgattgcttgagggccaataaatctacttcagcttggggtgttgaagctcgtgtacctttcttggataaagaattcatcaatattgcaatgaacattgatccggaatggaaaatgatccgacctgacctcggaagaatagaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0077O05-8lNNe/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0077O05.2" temp_strand="-" temp_description="C04HBa0077O05.2  CU457751.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0077O05 sequenced_by:sanger upload_account_name:uk">
        <position start="112121" stop="110351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111821" g_stop="111671" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111670" i_stop="111555" i_length="116">
            <donor d_prob="0.467" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111554" g_stop="111420" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="286" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111419" i_stop="110682" i_length="738">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110681" g_stop="110651" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="317" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0077O05.2" gen_strand="-" ref_id="SGN-E238326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0077O05.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111821" e_stop="111671"/>
          <exon e_start="111554" e_stop="111420"/>
          <exon e_start="110681" e_stop="110651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCAATGTTTCTCATGTCTCGGAAGATAAAGTCATTGGGTGTGAAAATGGTTTTATCAGGTGAAGGTTCTGATGAAATTTTTGGTGGTTATTTATATTTCCACAAGGCACCCAACAAAGAGGAGTTTCACCAAGAAACTTGTAGAAAGGTGGATCACATTATCAATTTTGCATTCATTCAGGCTTTATTGGAAGTAACTGCATTTCTATTAGAATTATCTTTGAACTATTTCTAGCTCTGATGGATGCTTTGATGTTAATCCAGATTAAAGCACTTCATCTTTATGATTGCTTGAGGGCCAATAAATCTACTTCAGCTTGGGGTGTTGAAGCTCGTGTACCTTTCTTGGATAAAGAATTCATCAATATTGCAATGAACATTGATCCGGAATGGAAAATGGTAATTGCTTCCCCTCTTAAATCTCTAACCCACCTTCACCCAACCATTAAATCTAGATTAACAAAGACCAAGAAAGAAAGATAAATCCTGTTCTTCCTTCAAGGAACAATAAAATGACATCTTACATAAAAAAATGTCAAAAGATTACTGCAAGTTATGTAGAAAAACAGTCTTCAACGTCGTGGTAGACCAGGGTTCAAATCTCAAGAAAAAAAATGTTATGTAATTTTTCTCATATGTTTAAGCCTTGATGCAGAGTTACCTAGTAAATGAGCTACTGAGAAGTTGCAAGTACTTGGTGGATTAGTTGAGGTGCACACAAGTTGACTGAACCATTCTTCATAGAGACAAGTTCAATCTTGTTTTATCATGAGTTTATGTTGTGTTGACTTTCCTGTGTTTATAAATAGATGAGCACATTTCTGGAGCATGATTTAATTTATTTCGCTCTTTGAGGTTTCTGAAGTTATTTCTAAACTCAAGCTTGCTGCGACTTATGTTAGGTCTAGAGAATTCTGCCAGGCAACAAATGGAATGTACATTCAAGTATTTATCTCCTTATTAGAAGTCCAGTGTTACTTGAACGGATCTGATGTATGGGATACAATATAGCTTCATACACATAACCTCATTATAATGTTGCTGATTTCATCTTTACATCTAGTATGATCCTACAATTTAATATATCTCTGTACAGTGACTATTATATACTGAAAATTCTTTCTTGAAACATTACAGATCCGACCTGACCTCGGAAGAATAGAAAAGT</genome_strand>
        <mrna_strand>TACACCAATGTTTCTCATGTCTCGGAAGATAAAGTCATTGGGTGTGAAAATGGTTTTATCAGGTGAAGGTTCTGATGAAATTTTTGGTGGTTATTTATATTTCCACAAGGCACCCAACAAAGAGGAGTTTCACCAAGAAACTTGTAGAAAG....................................................................................................................ATTAAAGCACTTCATCTTTATGATTGCTTGAGGGCCAATAAATCTACTTCAGCTTGGGGTGTTGAAGCTCGTGTACCTTTCTTGGATAAAGAATTCATCAATATTGCAATGAACATTGATCCGGAATGGAAAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGACCTGACCTCGGAAGAATAGAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>101</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3227" PGL_stop="3615"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3227" e_stop="3615"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3227" e_stop="3615" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3227" stop="3615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337650" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCATTGTGTCTTCATAATCCTGTGAACCGTCATGCCAAAAGCCTTTGGAGAAGAGCACAGGCATATGACATGCTTGGTTTAGCTAAGGAGAGCTTATTAGATGCTATTCTGTTTATAAATGAGTGTTCACAATCAAATGATCCTGATCTGTCTTTAAGGCAAAACAAGGTTCCTGATTATGCTGAGCGTTTGGTAAAAAAGCAGATGCGTGCAGCTTGGTTATTTAGAGAGGCTGCTATTAAACATGGTGGAGTTCAATGTGAGGGTGATGCTGGAGACATGTGTGGCCAGGAAACTGATGATTCAGAATGGGAGACAGCAAGTGAAAGTGAAATTGGAAATGAGGAGAGAGATGAAATTGGCGATGATATTTGTGGATGGGAAAATG</gDNA_template>
            <first_frame> C  I  V  S  S  *  S  C  E  P  S  C  Q  K  P  L  E  K  S  T  G  I  *  H  A  W  F  S  *  G  E  L  I  R  C  Y  S  V  Y  K  *  V  F  T  I  K  *  S  *  S  V  F  K  A  K  Q  G  S  *  L  C  *  A  F  G  K  K  A  D  A  C  S  L  V  I  *  R  G  C  Y  *  T  W  W  S  S  M  *  G  *  C  W  R  H  V  W  P  G  N  *  *  F  R  M  G  D  S  K  *  K  *  N  W  K  *  G  E  R  *  N  W  R  *  Y  L  W  M  G  K   </first_frame>
            <second_frame>  A  L  C  L  H  N  P  V  N  R  H  A  K  S  L  W  R  R  A  Q  A  Y  D  M  L  G  L  A  K  E  S  L  L  D  A  I  L  F  I  N  E  C  S  Q  S  N  D  P  D  L  S  L  R  Q  N  K  V  P  D  Y  A  E  R  L  V  K  K  Q  M  R  A  A  W  L  F  R  E  A  A  I  K  H  G  G  V  Q  C  E  G  D  A  G  D  M  C  G  Q  E  T  D  D  S  E  W  E  T  A  S  E  S  E  I  G  N  E  E  R  D  E  I  G  D  D  I  C  G  W  E  N  </second_frame>
            <third_frame>   H  C  V  F  I  I  L  *  T  V  M  P  K  A  F  G  E  E  H  R  H  M  T  C  L  V  *  L  R  R  A  Y  *  M  L  F  C  L  *  M  S  V  H  N  Q  M  I  L  I  C  L  *  G  K  T  R  F  L  I  M  L  S  V  W  *  K  S  R  C  V  Q  L  G  Y  L  E  R  L  L  L  N  M  V  E  F  N  V  R  V  M  L  E  T  C  V  A  R  K  L  M  I  Q  N  G  R  Q  Q  V  K  V  K  L  E  M  R  R  E  M  K  L  A  M  I  F  V  D  G  K  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0077O05.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3228" stop="3614"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALCLHNPVNRHAKSLWRRAQAYDMLGLAKESLLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRAAWLFREAAIKHGGVQCEGDAGDMCGQETDDSEWETASESEIGNEERDEIGDDICGWEN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="35946" PGL_stop="41706"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35946" e_stop="36047"/>
            <exon e_start="36127" e_stop="36276"/>
            <exon e_start="36353" e_stop="36425"/>
            <exon e_start="39640" e_stop="39820"/>
            <exon e_start="41270" e_stop="41413"/>
            <exon e_start="41488" e_stop="41706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.993" e_score="0.990"/>
          <exon-intron don_prob="0.967" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="35946" e_stop="36047" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36048" i_stop="36126" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36127" e_stop="36276" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.978">
            <gDNA_intron_boundary i_start="36277" i_stop="36352" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36353" e_stop="36425" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.968">
            <gDNA_intron_boundary i_start="36426" i_stop="39639" i_length="3214"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39640" e_stop="39820" e_length="181"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="39821" i_stop="41269" i_length="1449"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41270" e_stop="41413" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.902" acc_prob="0.980">
            <gDNA_intron_boundary i_start="41414" i_stop="41487" i_length="74"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="41488" e_stop="41706" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35946" stop="36047"/>
              <exon start="36127" stop="36276"/>
              <exon start="36353" stop="36425"/>
              <exon start="39640" stop="39820"/>
              <exon start="41270" stop="41413"/>
              <exon start="41488" stop="41706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707100" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGGATGCTGATCAGAGATTAACTCAAGATCTGGAGAAGCTAACCGCTGACTTGTCTAGTCTGGTAACTGGAATGGTGAAGCCAACTGTTGACATTCTATG : GTTCACATGGAGAATGAAAATGCTAACTGGCCAGAGGGGAGTCGCTATATTGTATGCTTACATGTTATTAGGTTTGGGTTTCCTGAGATGTGTTACTCCTGACTTTGGTGAACTGGCAAGTCGAGAACAACAGCTTGAAGGAACTTTCAG : GTTCATGCATGAAAGGTTGCGAACACATGCTGAATCTGTTGCTTTCTTTGGAGGTGGTGCTCGTGAAAAAGAG : ATGGTTGAAGCAAGGTTTAAAGAACTTCTTCACCACTCTTCTTTGCTTCTTAAGAAGAAATGGTTATTTGGCATAATAGATGAGTTCATCACGAAGCAGCTTCCTCACAATGTTACTTGGGGATTGAGTTTGTTGTATGCTATGGAGCACAAGGGCGACCGGGCTTTGACTTCAACTCAAG : ATGTACCTGAAGGTGTTAGTTCATCGCCATCCTCTGAGGATGTAATTTCTTTCTCTGAAGTGGACATCATTACACCAGGACAAAAAGTCTTGGCTAGGAAGCTAACATGTGATATAGTGAAGGGGAAAAGCCTTCTTGTAACTG : GCCCTAATGGAAGTGGAAAGAGTTCAATCTTCAGAGTCCTTCGTGGTTTATGGCCAGTCGTGAGTGGAAATCTAGTTAAACCAGGCCAACCGCTTAACTCAGAATTAGGCAGTGGCATCTTCTATGTACCCCAACGACCATATACGTGCTTAGGAACTCTAAGGGATCAAATTACATATCCTCTCTCACATGAAGTGGCTGAGAAAAGGGTACAGGCTA</gDNA_template>
            <first_frame> L  G  C  *  S  E  I  N  S  R  S  G  E  A  N  R  *  L  V  *  S  G  N  W  N  G  E  A  N  C  *  H  S  M  :  V  H  M  E  N  E  N  A  N  W  P  E  G  S  R  Y  I  V  C  L  H  V  I  R  F  G  F  P  E  M  C  Y  S  *  L  W  *  T  G  K  S  R  T  T  A  *  R  N  F  Q  :  V  H  A  *  K  V  A  N  T  C  *  I  C  C  F  L  W  R  W  C  S  *  K  R   : D  G  *  S  K  V  *  R  T  S  S  P  L  F  F  A  S  *  E  E  M  V  I  W  H  N  R  *  V  H  H  E  A  A  S  S  Q  C  Y  L  G  I  E  F  V  V  C  Y  G  A  Q  G  R  P  G  F  D  F  N  S  R :   C  T  *  R  C  *  F  I  A  I  L  *  G  C  N  F  F  L  *  S  G  H  H  Y  T  R  T  K  S  L  G  *  E  A  N  M  *  Y  S  E  G  E  K  P  S  C  N  W :   P  *  W  K  W  K  E  F  N  L  Q  S  P  S  W  F  M  A  S  R  E  W  K  S  S  *  T  R  P  T  A  *  L  R  I  R  Q  W  H  L  L  C  T  P  T  T  I  Y  V  L  R  N  S  K  G  S  N  Y  I  S  S  L  T  *  S  G  *  E  K  G  T  G   </first_frame>
            <second_frame>  L  D  A  D  Q  R  L  T  Q  D  L  E  K  L  T  A  D  L  S  S  L  V  T  G  M  V  K  P  T  V  D  I  L  W :   F  T  W  R  M  K  M  L  T  G  Q  R  G  V  A  I  L  Y  A  Y  M  L  L  G  L  G  F  L  R  C  V  T  P  D  F  G  E  L  A  S  R  E  Q  Q  L  E  G  T  F  R :   F  M  H  E  R  L  R  T  H  A  E  S  V  A  F  F  G  G  G  A  R  E  K  E  :  M  V  E  A  R  F  K  E  L  L  H  H  S  S  L  L  L  K  K  K  W  L  F  G  I  I  D  E  F  I  T  K  Q  L  P  H  N  V  T  W  G  L  S  L  L  Y  A  M  E  H  K  G  D  R  A  L  T  S  T  Q   : D  V  P  E  G  V  S  S  S  P  S  S  E  D  V  I  S  F  S  E  V  D  I  I  T  P  G  Q  K  V  L  A  R  K  L  T  C  D  I  V  K  G  K  S  L  L  V  T   : G  P  N  G  S  G  K  S  S  I  F  R  V  L  R  G  L  W  P  V  V  S  G  N  L  V  K  P  G  Q  P  L  N  S  E  L  G  S  G  I  F  Y  V  P  Q  R  P  Y  T  C  L  G  T  L  R  D  Q  I  T  Y  P  L  S  H  E  V  A  E  K  R  V  Q  A  </second_frame>
            <third_frame>   W  M  L  I  R  D  *  L  K  I  W  R  S  *  P  L  T  C  L  V  W  *  L  E  W  *  S  Q  L  L  T  F  Y   : G  S  H  G  E  *  K  C  *  L  A  R  G  E  S  L  Y  C  M  L  T  C  Y  *  V  W  V  S  *  D  V  L  L  L  T  L  V  N  W  Q  V  E  N  N  S  L  K  E  L  S   : G  S  C  M  K  G  C  E  H  M  L  N  L  L  L  S  L  E  V  V  L  V  K  K  R :   W  L  K  Q  G  L  K  N  F  F  T  T  L  L  C  F  L  R  R  N  G  Y  L  A  *  *  M  S  S  S  R  S  S  F  L  T  M  L  L  G  D  *  V  C  C  M  L  W  S  T  R  A  T  G  L  *  L  Q  L  K  :  M  Y  L  K  V  L  V  H  R  H  P  L  R  M  *  F  L  S  L  K  W  T  S  L  H  Q  D  K  K  S  W  L  G  S  *  H  V  I  *  *  R  G  K  A  F  L  *  L  :  A  L  M  E  V  E  R  V  Q  S  S  E  S  F  V  V  Y  G  Q  S  *  V  E  I  *  L  N  Q  A  N  R  L  T  Q  N  *  A  V  A  S  S  M  Y  P  N  D  H  I  R  A  *  E  L  *  G  I  K  L  H  I  L  S  H  M  K  W  L  R  K  G  Y  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0077O05.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35947" stop="36047"/>
                    <exon start="36127" stop="36276"/>
                    <exon start="36353" stop="36425"/>
                    <exon start="39640" stop="39820"/>
                    <exon start="41270" stop="41413"/>
                    <exon start="41488" stop="41705"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDADQRLTQDLEKLTADLSSLVTGMVKPTVDILWFTWRMKMLTGQRGVAILYAYMLLGLGFLRCVTPDFGELASREQQLEGTFRFMHERLRTHAESVAFFGGGAREKEMVEARFKELLHHSSLLLKKKWLFGIIDEFITKQLPHNVTWGLSLLYAMEHKGDRALTSTQDVPEGVSSSPSSEDVISFSEVDIITPGQKVLARKLTCDIVKGKSLLVTGPNGSGKSSIFRVLRGLWPVVSGNLVKPGQPLNSELGSGIFYVPQRPYTCLGTLRDQITYPLSHEVAEKRVQA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="43952" PGL_stop="44909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43952" e_stop="43974"/>
            <exon e_start="44079" e_stop="44131"/>
            <exon e_start="44233" e_stop="44311"/>
            <exon e_start="44407" e_stop="44909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.827" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.715" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43952" e_stop="43974" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.827">
            <gDNA_intron_boundary i_start="43975" i_stop="44078" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44079" e_stop="44131" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="44132" i_stop="44232" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44233" e_stop="44311" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.715">
            <gDNA_intron_boundary i_start="44312" i_stop="44406" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="44407" e_stop="44909" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43952" stop="43974"/>
              <exon start="44079" stop="44131"/>
              <exon start="44233" stop="44311"/>
              <exon start="44407" stop="44909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540407" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44460" stop="44909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288286" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAACAACAACGATTAGGAATG : GCACGCTTATTTTTTCACAAGCCACGGTTTGGAATCCTTGACGAATGTACAAA : TGCTACTAGTGTTGATGTTGAAGAACACCTGTATAGGCTTGCTAAGGATGCTGGCATTACTGTTGTTACATCCTCACAG : CGCCCTGCTTTAATACCTTTCCATTCTGTGGAATTACGGTTGATTGATGGTGAAGGCAAGTGGCAGCTGCGTTCAATTAAGATGGATGAGGAGGGGGAAGACGAACCAAATGAATACACACAACAATTGTGAGTACGATGATGTATTCCAATGTTGTGAAAACGTTCATAGAGCCAAAAATAATGAATGAATTATGAATGTAATAGTTTGCAGTTAGATTGAGGGTAGGAAACTATATAGTTAGGGTATACAAAAACTATTTTAAGTTGTTTCTTGTAATATTTCATATAGTTAACTGTGTATAGCGCCTAGTTCCCGTCGTTGTAAAAGGTTTAGGCATAATCTTTCCGGTCAGCTCTCCGTGAATAAAAATGGCAGGTAGAAAAGGAGGCTGACAGATTAATTTACTTATATTATCTTCTACATTTTACAATGTATTTTGATGATATTTTTCTGTTTAAATATACCAAAAATTTAATGGAGTGTATATTTTTGCCCTCTCT</gDNA_template>
            <first_frame> E  N  N  N  D  *  E  W :   H  A  Y  F  F  T  S  H  G  L  E  S  L  T  N  V  Q   : M  L  L  V  L  M  L  K  N  T  C  I  G  L  L  R  M  L  A  L  L  L  L  H  P  H  S :   A  L  L  *  Y  L  S  I  L  W  N  Y  G  *  L  M  V  K  A  S  G  S  C  V  Q  L  R  W  M  R  R  G  K  T  N  Q  M  N  T  H  N  N  C  E  Y  D  D  V  F  Q  C  C  E  N  V  H  R  A  K  N  N  E  *  I  M  N  V  I  V  C  S  *  I  E  G  R  K  L  Y  S  *  G  I  Q  K  L  F  *  V  V  S  C  N  I  S  Y  S  *  L  C  I  A  P  S  S  R  R  C  K  R  F  R  H  N  L  S  G  Q  L  S  V  N  K  N  G  R  *  K  R  R  L  T  D  *  F  T  Y  I  I  F  Y  I  L  Q  C  I  L  M  I  F  F  C  L  N  I  P  K  I  *  W  S  V  Y  F  C  P  L  </first_frame>
            <second_frame>  R  T  T  T  I  R  N   : G  T  L  I  F  S  Q  A  T  V  W  N  P  *  R  M  Y  K  :  C  Y  *  C  *  C  *  R  T  P  V  *  A  C  *  G  C  W  H  Y  C  C  Y  I  L  T   : A  P  C  F  N  T  F  P  F  C  G  I  T  V  D  *  W  *  R  Q  V  A  A  A  F  N  *  D  G  *  G  G  G  R  R  T  K  *  I  H  T  T  I  V  S  T  M  M  Y  S  N  V  V  K  T  F  I  E  P  K  I  M  N  E  L  *  M  *  *  F  A  V  R  L  R  V  G  N  Y  I  V  R  V  Y  K  N  Y  F  K  L  F  L  V  I  F  H  I  V  N  C  V  *  R  L  V  P  V  V  V  K  G  L  G  I  I  F  P  V  S  S  P  *  I  K  M  A  G  R  K  G  G  *  Q  I  N  L  L  I  L  S  S  T  F  Y  N  V  F  *  *  Y  F  S  V  *  I  Y  Q  K  F  N  G  V  Y  I  F  A  L  S </second_frame>
            <third_frame>   E  Q  Q  R  L  G  M  :  A  R  L  F  F  H  K  P  R  F  G  I  L  D  E  C  T  N :   A  T  S  V  D  V  E  E  H  L  Y  R  L  A  K  D  A  G  I  T  V  V  T  S  S  Q  :  R  P  A  L  I  P  F  H  S  V  E  L  R  L  I  D  G  E  G  K  W  Q  L  R  S  I  K  M  D  E  E  G  E  D  E  P  N  E  Y  T  Q  Q  L  *  V  R  *  C  I  P  M  L  *  K  R  S  *  S  Q  K  *  *  M  N  Y  E  C  N  S  L  Q  L  D  *  G  *  E  T  I  *  L  G  Y  T  K  T  I  L  S  C  F  L  *  Y  F  I  *  L  T  V  Y  S  A  *  F  P  S  L  *  K  V  *  A  *  S  F  R  S  A  L  R  E  *  K  W  Q  V  E  K  E  A  D  R  L  I  Y  L  Y  Y  L  L  H  F  T  M  Y  F  D  D  I  F  L  F  K  Y  T  K  N  L  M  E  C  I  F  L  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0077O05.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43954" stop="43974"/>
                    <exon start="44079" stop="44131"/>
                    <exon start="44233" stop="44311"/>
                    <exon start="44407" stop="44538"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQQRLGMARLFFHKPRFGILDECTNATSVDVEEHLYRLAKDAGITVVTSSQRPALIPFHSVELRLIDGEGKWQLRSIKMDEEGEDEPNEYTQQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="63175" PGL_stop="63561"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63175" e_stop="63561"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="63175" e_stop="63561" e_length="387"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63175" stop="63561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTACTTTTTCTTTAACTCATGTTTTTGGTTGATCTCGTTATAAGAATCAAGGTATTATATGCATAAAATCAGGTATGTATTTTCTAGAATATTTTTATGATTTAGAATAAAATAGTATTCAGTCACTAACAATTATCAGGAATCGAAGACATATACTACTATTGGTTGAATATGACATGCTATACAAAATTTCTTAAATAGAAGAAGGTATAAAATTTTAATAGCATGAATTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGATGAGTCATGTTGTACTTCGATTTATTATACCGTTGGTTAAGGGTAAGACGATGAATTCAAGTTTCATCG</gDNA_template>
            <first_frame> F  Y  N  T  L  S  A  R  V  S  S  Q  L  R  L  S  F  T  F  S  L  T  H  V  F  G  *  S  R  Y  K  N  Q  G  I  I  C  I  K  S  G  M  Y  F  L  E  Y  F  Y  D  L  E  *  N  S  I  Q  S  L  T  I  I  R  N  R  R  H  I  L  L  L  V  E  Y  D  M  L  Y  K  I  S  *  I  E  E  G  I  K  F  *  *  H  E  F  E  C  Y  F  D  C  F  E  R  L  K  G  *  V  M  L  Y  F  D  L  L  Y  R  W  L  R  V  R  R  *  I  Q  V  S  S </first_frame>
            <second_frame>  F  I  T  R  Y  Q  H  E  S  L  A  N  *  D  *  V  L  L  F  L  *  L  M  F  L  V  D  L  V  I  R  I  K  V  L  Y  A  *  N  Q  V  C  I  F  *  N  I  F  M  I  *  N  K  I  V  F  S  H  *  Q  L  S  G  I  E  D  I  Y  Y  Y  W  L  N  M  T  C  Y  T  K  F  L  K  *  K  K  V  *  N  F  N  S  M  N  L  N  V  I  L  I  V  L  K  D  S  K  D  E  S  C  C  T  S  I  Y  Y  T  V  G  *  G  *  D  D  E  F  K  F  H   </second_frame>
            <third_frame>   L  *  H  V  I  S  T  S  L  *  P  I  K  I  E  F  Y  F  F  F  N  S  C  F  W  L  I  S  L  *  E  S  R  Y  Y  M  H  K  I  R  Y  V  F  S  R  I  F  L  *  F  R  I  K  *  Y  S  V  T  N  N  Y  Q  E  S  K  T  Y  T  T  I  G  *  I  *  H  A  I  Q  N  F  L  N  R  R  R  Y  K  I  L  I  A  *  I  *  M  L  F  *  L  F  *  K  T  Q  R  M  S  H  V  V  L  R  F  I  I  P  L  V  K  G  K  T  M  N  S  S  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0077O05.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="63796" PGL_stop="64434"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63796" e_stop="64434"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="63796" e_stop="64434" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63796" stop="64434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542836" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATGAAAAGTCTTGAAATTCGTTTTATTGAATTTGCTTCATTCCTTGAAAAGAATGTGGTAGCAACATGTAATAACTCTGATATCCGCCTGTTAACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGTTAGTCTGAAAGATGACAAATGATTAATGATATGAATAAGGGCGTGAAGGGACATAATTATAATAGTCATCATTGTGGTAATGATAAAAGGAACATTATGAGTTCTTCAAATAGTCCTTCAAAATGTGAAGGCAATTTTTATTATCAAAATGGTATGAAAGGTCATTAGACTTGTGAATGTTGTCGACCCAATAATTTGACAAATTTATAAATCCTCTATCATGATACAAGATAAAGTGATGGTACACTTAATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTCCAATCCTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGATCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATAATTATGGGTTGGATACATGTCACTTCTCATCTCTACGGGAGATTTGAGAGGAAATAAA</gDNA_template>
            <first_frame> F  D  E  K  S  *  N  S  F  Y  *  I  C  F  I  P  *  K  E  C  G  S  N  M  *  *  L  *  Y  P  P  V  N  L  L  H  S  I  I  *  M  W  *  Q  *  M  L  V  *  K  M  T  N  D  *  *  Y  E  *  G  R  E  G  T  *  L  *  *  S  S  L  W  *  *  *  K  E  H  Y  E  F  F  K  *  S  F  K  M  *  R  Q  F  L  L  S  K  W  Y  E  R  S  L  D  L  *  M  L  S  T  Q  *  F  D  K  F  I  N  P  L  S  *  Y  K  I  K  *  W  Y  T  *  S  F  K  V  M  L  R  C  V  M  E  I  *  *  I  L  K  S  *  Q  C  A  Y  N  A  N  L  *  S  T  Y  K  *  L  V  Q  S  L  K  R  M  *  L  V  M  S  I  V  N  A  R  S  F  Y  K  R  M  G  P  D  V  I  K  *  L  W  V  G  Y  M  S  L  L  I  S  T  G  D  L  R  G  N  K </first_frame>
            <second_frame>  L  M  K  S  L  E  I  R  F  I  E  F  A  S  F  L  E  K  N  V  V  A  T  C  N  N  S  D  I  R  L  L  T  C  S  I  Q  S  Y  E  C  G  S  S  E  C  *  S  E  R  *  Q  M  I  N  D  M  N  K  G  V  K  G  H  N  Y  N  S  H  H  C  G  N  D  K  R  N  I  M  S  S  S  N  S  P  S  K  C  E  G  N  F  Y  Y  Q  N  G  M  K  G  H  *  T  C  E  C  C  R  P  N  N  L  T  N  L  *  I  L  Y  H  D  T  R  *  S  D  G  T  L  N  L  S  K  *  C  *  G  V  S  W  K  Y  D  E  F  *  S  H  D  N  V  L  I  M  Q  I  Y  E  V  H  I  N  N  *  S  N  P  *  R  E  C  D  L  *  *  V  S  *  M  L  D  H  S  I  R  E  W  V  Q  M  *  *  N  N  Y  G  L  D  T  C  H  F  S  S  L  R  E  I  *  E  E  I   </second_frame>
            <third_frame>   *  *  K  V  L  K  F  V  L  L  N  L  L  H  S  L  K  R  M  W  *  Q  H  V  I  T  L  I  S  A  C  *  L  A  P  F  N  H  M  N  V  V  A  V  N  V  S  L  K  D  D  K  *  L  M  I  *  I  R  A  *  R  D  I  I  I  I  V  I  I  V  V  M  I  K  G  T  L  *  V  L  Q  I  V  L  Q  N  V  K  A  I  F  I  I  K  M  V  *  K  V  I  R  L  V  N  V  V  D  P  I  I  *  Q  I  Y  K  S  S  I  M  I  Q  D  K  V  M  V  H  L  I  F  Q  S  D  V  E  V  C  H  G  N  M  M  N  F  K  V  M  T  M  C  L  *  C  K  F  M  K  Y  I  *  I  I  S  P  I  L  E  E  N  V  T  C  N  E  Y  R  E  C  S  I  I  L  *  E  N  G  S  R  C  D  K  I  I  M  G  W  I  H  V  T  S  H  L  Y  G  R  F  E  R  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0077O05.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="66473" PGL_stop="65811"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66473" e_stop="65811"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="66473" e_stop="65811" e_length="663"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66473" stop="65811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66473" stop="66084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACATTCATTGTCTAGCTAGACATTAAAATTATTCATTTACATGCATTCAAGTTTTCATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCACTAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAATCGTATTTGATATCTTACAGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCCAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCATTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAATTGTTATGTCAATGTGCTCTTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTCAAGGAATTTTATATTTGGAATTGATTGGTCTATTACGCTTCCGGCGTATCATAGACTCTG</gDNA_template>
            <first_frame> F  R  H  L  D  C  F  K  D  F  H  I  T  F  I  V  *  L  D  I  K  I  I  H  L  H  A  F  K  F  S  Y  V  A  R  S  K  Q  T  S  F  H  P  P  K  E  K  T  S  P  L  M  S  G  F  L  R  *  T  F  M  P  Q  G  T  N  R  I  *  Y  L  T  V  I  L  S  H  N  N  L  F  V  P  H  *  H  Y  T  L  I  Y  G  L  P  V  Q  N  V  T  F  L  S  E  T  K  Y  T  *  I  V  H  F  T  W  P  T  I  Y  L  F  T  L  Y  D  R  F  E  F  K  I  I  S  L  S  A  T  S  Y  Q  R  Y  R  R  R  L  F  D  I  D  S  N  K  T  *  L  I  E  I  S  S  F  F  I  I  S  G  T  *  T  F  F  K  I  L  *  I  V  M  S  M  C  S  F  I  A  L  A  S  L  S  *  P  Y  *  S  F  A  P  S  F  F  K  E  F  Y  I  W  N  *  L  V  Y  Y  A  S  G  V  S  *  T  L </first_frame>
            <second_frame>  S  D  T  S  I  V  S  R  I  F  I  *  H  S  L  S  S  *  T  L  K  L  F  I  Y  M  H  S  S  F  H  M  L  P  D  Q  N  K  P  H  F  I  H  Q  R  R  K  H  L  H  *  C  Q  D  F  C  D  K  P  L  C  P  K  A  Q  I  V  F  D  I  L  Q  L  Y  Y  R  I  I  I  Y  L  Y  P  T  D  I  I  P  *  F  M  D  Y  Q  S  K  M  S  L  F  *  V  K  Q  N  I  L  E  L  C  I  L  L  G  Q  P  F  I  C  S  H  Y  M  T  D  L  N  S  R  L  Y  H  *  A  L  P  H  I  K  D  T  V  D  G  Y  L  I  S  I  P  T  R  H  N  L  S  R  S  L  H  F  S  L  F  Q  V  P  E  P  F  S  R  F  Y  E  L  L  C  Q  C  A  L  L  *  H  L  P  H  Y  H  D  H  I  D  H  L  L  L  P  S  S  R  N  F  I  F  G  I  D  W  S  I  T  L  P  A  Y  H  R  L   </second_frame>
            <third_frame>   Q  T  P  R  L  F  Q  G  F  S  Y  N  I  H  C  L  A  R  H  *  N  Y  S  F  T  C  I  Q  V  F  I  C  C  Q  I  K  T  N  L  I  S  S  T  K  G  E  N  I  S  T  N  V  R  I  F  A  I  N  L  Y  A  P  R  H  K  S  Y  L  I  S  Y  S  Y  T  I  A  *  *  F  I  C  T  P  L  T  L  Y  L  D  L  W  T  T  S  P  K  C  H  F  S  K  *  N  K  I  Y  L  N  C  A  F  Y  L  A  N  H  L  S  V  H  T  I  *  Q  I  *  I  Q  D  Y  I  I  E  R  Y  L  I  S  K  I  P  S  T  V  I  *  Y  R  F  Q  Q  D  I  T  Y  R  D  L  F  I  F  H  Y  F  R  Y  L  N  L  F  Q  D  F  M  N  C  Y  V  N  V  L  F  Y  S  T  C  L  I  I  M  T  I  L  I  I  C  S  F  L  L  Q  G  I  L  Y  L  E  L  I  G  L  L  R  F  R  R  I  I  D  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0077O05.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66033" stop="65812"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRFQQDITYRDLFIFHYFRYLNLFQDFMNCYVNVLFYSTCLIIMTILIICSFLLQGILYLELIGLLRFRRIIDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="66079" PGL_stop="67042"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66079" e_stop="67042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="66079" e_stop="67042" e_length="964"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66079" stop="66756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66080" stop="66634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66084" stop="66537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66128" stop="66710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66486" stop="66894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66562" stop="67042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATATAATCTTGAATTCAAATCTGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACTGTAAGATATCAAATACGATTTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCTCCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAACTTGAATGCATGTAAATGAATAATTTTAATGTCTAGCTAGACAATGAATGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAATATATTTGTCTAACAGTGCACATACACTGAAAATTTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGGCATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAAGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCAGTTTCTCCCCGATAAAAGGACATTGAAATGGTGTTGAGCACATGATTGAATATCCTCGAAGGACCATAGTTATGTGTTTATTCTATCCCGAGGAATCCAAGACAAAATTGATTGATTACGCAGATGCAGAATATTTA</gDNA_template>
            <first_frame> D  I  I  L  N  S  N  L  S  Y  S  V  N  R  *  M  V  G  Q  V  K  C  T  I  Q  V  Y  F  V  S  L  R  K  V  T  F  W  T  G  S  P  *  I  K  V  *  C  Q  W  G  T  N  K  L  L  C  D  S  I  T  V  R  Y  Q  I  R  F  V  P  W  G  I  K  V  Y  R  K  N  P  D  I  S  G  D  V  F  S  F  G  G  *  N  E  V  C  F  D  L  A  T  Y  E  N  L  N  A  C  K  *  I  I  L  M  S  S  *  T  M  N  V  I  *  K  S  L  K  Q  S  R  C  L  K  H  I  R  V  *  K  K  L  F  Q  *  S  F  K  N  P  Y  M  D  *  N  S  Q  G  R  K  R  V  Q  K  N  D  P  N  C  P  C  I  F  M  K  R  S  W  *  D  K  I  L  S  *  P  T  D  C  *  F  D  K  *  Y  I  C  L  T  V  H  I  H  *  K  F  L  M  Q  F  Y  V  D  I  S  H  S  L  S  T  P  M  I  M  R  S  L  G  I  N  D  D  S  V  *  S  Q  K  K  D  E  E  F  L  G  D  E  T  L  S  W  C  N  Q  G  T  S  A  S  Y  *  Q  Y  L  T  R  Y  L  F  C  S  K  F  T  G  K  I  Q  F  L  P  D  K  R  T  L  K  W  C  *  A  H  D  *  I  S  S  K  D  H  S  Y  V  F  I  L  S  R  G  I  Q  D  K  I  D  *  L  R  R  C  R  I  F  </first_frame>
            <second_frame>  I  *  S  *  I  Q  I  C  H  I  V  *  T  D  K  W  L  A  K  *  N  A  Q  F  K  Y  I  L  F  H  L  E  K  *  H  F  G  L  V  V  H  K  S  R  Y  N  V  S  G  V  Q  I  N  Y  Y  A  I  V  *  L  *  D  I  K  Y  D  L  C  L  G  A  *  R  F  I  A  K  I  L  T  L  V  E  M  F  S  P  L  V  D  E  M  R  F  V  L  I  W  Q  H  M  K  T  *  M  H  V  N  E  *  F  *  C  L  A  R  Q  *  M  L  Y  E  N  P  *  N  N  R  G  V  *  S  I  *  E  F  E  R  N  F  S  N  K  A  S  R  I  L  I  W  I  E  I  V  K  E  E  K  G  Y  K  R  M  I  L  I  V  L  V  F  L  *  K  G  L  G  K  T  K  F  C  L  D  L  Q  I  V  N  L  T  N  N  I  F  V  *  Q  C  T  Y  T  E  N  F  *  C  N  F  M  W  I  Y  R  I  H  *  V  P  Q  *  L  *  D  H  L  A  *  M  M  I  Q  F  D  L  K  R  R  M  K  S  F  L  V  M  K  L  Y  L  G  A  I  R  A  L  V  H  L  T  N  N  I  *  P  D  I  C  F  A  V  N  L  L  A  R  F  S  F  S  P  I  K  G  H  *  N  G  V  E  H  M  I  E  Y  P  R  R  T  I  V  M  C  L  F  Y  P  E  E  S  K  T  K  L  I  D  Y  A  D  A  E  Y  L </second_frame>
            <third_frame>   Y  N  L  E  F  K  S  V  I  *  C  E  Q  I  N  G  W  P  S  K  M  H  N  S  S  I  F  C  F  T  *  K  S  D  I  L  D  W  *  S  I  N  Q  G  I  M  S  V  G  Y  K  *  I  I  M  R  *  Y  N  C  K  I  S  N  T  I  C  A  L  G  H  K  G  L  S  Q  K  S  *  H  *  W  R  C  F  L  L  W  W  M  K  *  G  L  F  *  S  G  N  I  *  K  L  E  C  M  *  M  N  N  F  N  V  *  L  D  N  E  C  Y  M  K  I  L  E  T  I  E  V  S  E  A  Y  K  S  L  K  E  T  F  P  I  K  L  Q  E  S  L  Y  G  L  K  *  S  R  K  K  K  G  T  K  E  *  S  *  L  S  L  Y  F  Y  E  K  V  L  V  R  Q  N  F  V  L  T  Y  R  L  L  I  *  Q  I  I  Y  L  S  N  S  A  H  T  L  K  I  F  D  A  I  L  C  G  Y  I  A  F  I  E  Y  P  N  D  Y  E  I  T  W  H  K  *  *  F  S  L  I  S  K  E  G  *  R  V  S  W  *  *  N  S  I  L  V  Q  S  G  H  *  C  I  L  L  T  I  F  D  Q  I  F  V  L  Q  *  I  Y  W  Q  D  S  V  S  P  R  *  K  D  I  E  M  V  L  S  T  *  L  N  I  L  E  G  P  *  L  C  V  Y  S  I  P  R  N  P  R  Q  N  *  L  I  T  Q  M  Q  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0077O05.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="68284" PGL_stop="71472"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68284" e_stop="68470"/>
            <exon e_start="68546" e_stop="68619"/>
            <exon e_start="70354" e_stop="70489"/>
            <exon e_start="70613" e_stop="70927"/>
            <exon e_start="71015" e_stop="71472"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68284" e_stop="68470" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="68471" i_stop="68545" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68546" e_stop="68619" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.903">
            <gDNA_intron_boundary i_start="68620" i_stop="70353" i_length="1734"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70354" e_stop="70489" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="70490" i_stop="70612" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70613" e_stop="70927" e_length="315"/>
          </exon>
          <intron i_serial="4" don_prob="0.966" acc_prob="0.997">
            <gDNA_intron_boundary i_start="70928" i_stop="71014" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="71015" e_stop="71472" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68284" stop="68470"/>
              <exon start="68546" stop="68619"/>
              <exon start="70354" stop="70489"/>
              <exon start="70613" stop="70927"/>
              <exon start="71015" stop="71469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68285" stop="68470"/>
              <exon start="68546" stop="68619"/>
              <exon start="70354" stop="70489"/>
              <exon start="70613" stop="70805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68304" stop="68470"/>
              <exon start="68546" stop="68619"/>
              <exon start="70354" stop="70489"/>
              <exon start="70613" stop="70927"/>
              <exon start="71015" stop="71148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68339" stop="68470"/>
              <exon start="68546" stop="68619"/>
              <exon start="70354" stop="70489"/>
              <exon start="70613" stop="70927"/>
              <exon start="71015" stop="71219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68345" stop="68470"/>
              <exon start="68546" stop="68619"/>
              <exon start="70354" stop="70489"/>
              <exon start="70613" stop="70850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70392" stop="70489"/>
              <exon start="70613" stop="70803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70412" stop="70489"/>
              <exon start="70613" stop="70927"/>
              <exon start="71015" stop="71446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70927" stop="70927"/>
              <exon start="71015" stop="71472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70927" stop="70927"/>
              <exon start="71015" stop="71460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71015" stop="71463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71270" stop="71467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344353" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGTTTTATAAGATAAAGCAAAGACTTCCCATTTTCAAATTTCAGCTAAAATGGAGAGAGCAACACCTGTACGGAAGCCTAACACCTCTGCCGCCGATCTGCTCACCTGGTCTGAAGTTCCGCCGGCGAACAACTCAGCTTCTGCCTCCGGCAATGCATCTCGCTCCGGCGCTCGTTCTCATCAG : CCTTCTGATGGAATCAGTAAGGTTCTGTTTGGAGGTCAAATTACTGAAGAGGAAGCTGAGAGCTTGAACAAACG : TAAACCATGTTCAGGGTACAAACTGAAGGAGATGAATGGCAGCAAAATCTTTTCTGCTGATGGTGAAGATGATGCATCTGAATCAGGAGCTGTTAATGGTAACTTCAACAACAGGACATCTGTCCGCATTGTTCAG : CAAGCTGCAAATGGAATAAGCCAGATATCATTCAGTACTGAAGAAAGGATCTCTCCAAAGAAACCTATCACACTTACAGAAGTGGCAAAACAGAGAGAGTTGAGCGGAACACTAGAAAGTGATTCAGATAGCAATATGAAGAAGCAGCTTTCAGATGCAAAGAGCAAGGAACTCAGTGGAAATGACATATTTGGCCCTCCCGCAGAAATTCCTCCTAGATCTTTGGCTGCTGCCCGATCCATAGAGTCAAAAGAAAGCAAAGACATGGGTGAACCTGCTCCACGACTTGTACGTACGTCTGTCAAGGTTTCTAAT : CCTGCTGGTGGTCAAAGCAATATTTTGTTTGGTGATGAACCTGTTGTCAACACAGTAAAGAAAATACATAACCAGAAGTTTGCAGAGTTGACCGGCAATGACATTTTCAAGGGAGATATTCCTCCTGGATCTGCAGAAAAGCCACTGAGCAGAGCAAAGCTGAGAGAAATGAGTGGAAATGATATTTTTTCTGATGGAAAAGTTGAATCCAGAGATTATTTTGGTGGCGTTCGTAAACCACCAGGCGGAGAAAGCAGCATCGCGCTGGTTTAGATAAATGTCATCAGACTGCTGCTATGTTTGACCTGTAGTGTTCCTGCAACATTTCACTTCTAATGTTTCATGGGTTTTAGAATTGAGGGTTGTAGATGATATGTGTTTAACCATGTTGTACGGACAACTTCTAAACTATAATTTACATAAACTTGGAGGATTTGCCTAACATAGTGTTTTTAAGA</gDNA_template>
            <first_frame> F  C  F  I  R  *  S  K  D  F  P  F  S  N  F  S  *  N  G  E  S  N  T  C  T  E  A  *  H  L  C  R  R  S  A  H  L  V  *  S  S  A  G  E  Q  L  S  F  C  L  R  Q  C  I  S  L  R  R  S  F  S  S   : A  F  *  W  N  Q  *  G  S  V  W  R  S  N  Y  *  R  G  S  *  E  L  E  Q  T  :  *  T  M  F  R  V  Q  T  E  G  D  E  W  Q  Q  N  L  F  C  *  W  *  R  *  C  I  *  I  R  S  C  *  W  *  L  Q  Q  Q  D  I  C  P  H  C  S   : A  S  C  K  W  N  K  P  D  I  I  Q  Y  *  R  K  D  L  S  K  E  T  Y  H  T  Y  R  S  G  K  T  E  R  V  E  R  N  T  R  K  *  F  R  *  Q  Y  E  E  A  A  F  R  C  K  E  Q  G  T  Q  W  K  *  H  I  W  P  S  R  R  N  S  S  *  I  F  G  C  C  P  I  H  R  V  K  R  K  Q  R  H  G  *  T  C  S  T  T  C  T  Y  V  C  Q  G  F  *   : S  C  W  W  S  K  Q  Y  F  V  W  *  *  T  C  C  Q  H  S  K  E  N  T  *  P  E  V  C  R  V  D  R  Q  *  H  F  Q  G  R  Y  S  S  W  I  C  R  K  A  T  E  Q  S  K  A  E  R  N  E  W  K  *  Y  F  F  *  W  K  S  *  I  Q  R  L  F  W  W  R  S  *  T  T  R  R  R  K  Q  H  R  A  G  L  D  K  C  H  Q  T  A  A  M  F  D  L  *  C  S  C  N  I  S  L  L  M  F  H  G  F  *  N  *  G  L  *  M  I  C  V  *  P  C  C  T  D  N  F  *  T  I  I  Y  I  N  L  E  D  L  P  N  I  V  F  L  R </first_frame>
            <second_frame>  F  V  L  *  D  K  A  K  T  S  H  F  Q  I  S  A  K  M  E  R  A  T  P  V  R  K  P  N  T  S  A  A  D  L  L  T  W  S  E  V  P  P  A  N  N  S  A  S  A  S  G  N  A  S  R  S  G  A  R  S  H  Q  :  P  S  D  G  I  S  K  V  L  F  G  G  Q  I  T  E  E  E  A  E  S  L  N  K  R :   K  P  C  S  G  Y  K  L  K  E  M  N  G  S  K  I  F  S  A  D  G  E  D  D  A  S  E  S  G  A  V  N  G  N  F  N  N  R  T  S  V  R  I  V  Q  :  Q  A  A  N  G  I  S  Q  I  S  F  S  T  E  E  R  I  S  P  K  K  P  I  T  L  T  E  V  A  K  Q  R  E  L  S  G  T  L  E  S  D  S  D  S  N  M  K  K  Q  L  S  D  A  K  S  K  E  L  S  G  N  D  I  F  G  P  P  A  E  I  P  P  R  S  L  A  A  A  R  S  I  E  S  K  E  S  K  D  M  G  E  P  A  P  R  L  V  R  T  S  V  K  V  S  N  :  P  A  G  G  Q  S  N  I  L  F  G  D  E  P  V  V  N  T  V  K  K  I  H  N  Q  K  F  A  E  L  T  G  N  D  I  F  K  G  D  I  P  P  G  S  A  E  K  P  L  S  R  A  K  L  R  E  M  S  G  N  D  I  F  S  D  G  K  V  E  S  R  D  Y  F  G  G  V  R  K  P  P  G  G  E  S  S  I  A  L  V  *  I  N  V  I  R  L  L  L  C  L  T  C  S  V  P  A  T  F  H  F  *  C  F  M  G  F  R  I  E  G  C  R  *  Y  V  F  N  H  V  V  R  T  T  S  K  L  *  F  T  *  T  W  R  I  C  L  T  *  C  F  *   </second_frame>
            <third_frame>   L  F  Y  K  I  K  Q  R  L  P  I  F  K  F  Q  L  K  W  R  E  Q  H  L  Y  G  S  L  T  P  L  P  P  I  C  S  P  G  L  K  F  R  R  R  T  T  Q  L  L  P  P  A  M  H  L  A  P  A  L  V  L  I  S :   L  L  M  E  S  V  R  F  C  L  E  V  K  L  L  K  R  K  L  R  A  *  T  N   : V  N  H  V  Q  G  T  N  *  R  R  *  M  A  A  K  S  F  L  L  M  V  K  M  M  H  L  N  Q  E  L  L  M  V  T  S  T  T  G  H  L  S  A  L  F  S :   K  L  Q  M  E  *  A  R  Y  H  S  V  L  K  K  G  S  L  Q  R  N  L  S  H  L  Q  K  W  Q  N  R  E  S  *  A  E  H  *  K  V  I  Q  I  A  I  *  R  S  S  F  Q  M  Q  R  A  R  N  S  V  E  M  T  Y  L  A  L  P  Q  K  F  L  L  D  L  W  L  L  P  D  P  *  S  Q  K  K  A  K  T  W  V  N  L  L  H  D  L  Y  V  R  L  S  R  F  L  I :   L  L  V  V  K  A  I  F  C  L  V  M  N  L  L  S  T  Q  *  R  K  Y  I  T  R  S  L  Q  S  *  P  A  M  T  F  S  R  E  I  F  L  L  D  L  Q  K  S  H  *  A  E  Q  S  *  E  K  *  V  E  M  I  F  F  L  M  E  K  L  N  P  E  I  I  L  V  A  F  V  N  H  Q  A  E  K  A  A  S  R  W  F  R  *  M  S  S  D  C  C  Y  V  *  P  V  V  F  L  Q  H  F  T  S  N  V  S  W  V  L  E  L  R  V  V  D  D  M  C  L  T  M  L  Y  G  Q  L  L  N  Y  N  L  H  K  L  G  G  F  A  *  H  S  V  F  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0077O05.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68297" stop="68470"/>
                    <exon start="68546" stop="68619"/>
                    <exon start="70354" stop="70489"/>
                    <exon start="70613" stop="70927"/>
                    <exon start="71015" stop="71287"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKAKTSHFQISAKMERATPVRKPNTSAADLLTWSEVPPANNSASASGNASRSGARSHQPSDGISKVLFGGQITEEEAESLNKRKPCSGYKLKEMNGSKIFSADGEDDASESGAVNGNFNNRTSVRIVQQAANGISQISFSTEERISPKKPITLTEVAKQRELSGTLESDSDSNMKKQLSDAKSKELSGNDIFGPPAEIPPRSLAAARSIESKESKDMGEPAPRLVRTSVKVSNPAGGQSNILFGDEPVVNTVKKIHNQKFAELTGNDIFKGDIPPGSAEKPLSRAKLREMSGNDIFSDGKVESRDYFGGVRKPPGGESSIALV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="75325" PGL_stop="71481"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75325" e_stop="75063"/>
            <exon e_start="73803" e_stop="73658"/>
            <exon e_start="73448" e_stop="73230"/>
            <exon e_start="72460" e_stop="72248"/>
            <exon e_start="72159" e_stop="71586"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.568" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.613" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75325" e_stop="75063" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.568">
            <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73803" e_stop="73658" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73448" e_stop="73230" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.613">
            <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72460" e_stop="72248" e_length="213"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72159" e_stop="71586" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75325" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="71598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75324" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75323" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75247" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75184" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="71961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75181" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75172" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="72089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75172" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="72089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75169" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="72038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75167" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="72123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75165" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75163" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="72019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75163" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75163" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75162" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75160" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75159" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75159" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75157" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="71978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75156" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="72089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75156" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75154" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75153" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75152" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75150" stop="75063"/>
              <exon start="73803" stop="73659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75146" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75143" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75142" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="71994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75142" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75138" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="71586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75138" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75132" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75131" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75131" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75131" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281308" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75130" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75121" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75110" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75090" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="72118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73787" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="71790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73704" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73683" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="71668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72447" stop="72248"/>
              <exon start="72159" stop="71637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72447" stop="72248"/>
              <exon start="72159" stop="71739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72414" stop="72248"/>
              <exon start="72159" stop="71714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72398" stop="72248"/>
              <exon start="72159" stop="71714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72384" stop="72248"/>
              <exon start="72159" stop="71695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72133" stop="71695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72072" stop="71695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71867" stop="71639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309089" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATAAAAGTTATGTTACGTTACAAAAATAATAAAATCGTGTATCCCAATGACTTTTGCGATGGCAAAAAATGTCTGAATCCACTTTTTATGTTCCCACGTATATTCTTGAGATTGTACATATACTATAGTTTTGACTCATAAATAATTCAAGAACACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG : GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG : CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG : CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG : GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTCATTTCGGACTTCTACTGGTTTTGCCTGCTAAATAAGCATAGCTTCAACTTTGGCTTGAACGGATCTTGTTTCTTTATAACTCAGAAATAGATTATGTATCTTGGTTCGT</gDNA_template>
            <first_frame> S  *  K  L  C  Y  V  T  K  I  I  K  S  C  I  P  M  T  F  A  M  A  K  N  V  *  I  H  F  L  C  S  H  V  Y  S  *  D  C  T  Y  T  I  V  L  T  H  K  *  F  K  N  T  Q  H  I  L  K  K  G  K  K  N  V  *  S  *  S  S  S  I  S  S  R  S  L  *  R  C  *  A  T  Q  K  S  F  *  R :   M  G  H  K  *  G  T  Y  Y  S  D  S  G  S  *  E  C  S  T  T  Q  V  N  P  R  F  L  C  C  C  L  W  R  G  S  S  Q  G  L  G  F  *  T  D  K  *  F  S   : A  C  G  A  S  L  D  F  E  S  C  *  A  R  R  L  L  G  *  *  G  Y  Q  T  S  D  C  *  Q  L  G  Y  H  G  N  C  L  Y  Q  V  F  *  *  S  F  *  G  E  A  G  L  P  C  S  I  Q  E  I  T  *  R  R  C  C  L  S  Y  K  W  G  F  P  *   : A  F  G  S  S  Y  N  C  I  Q  I  *  R  R  *  G  E  H  D  I  S  K  K  G  S  K  Y  T  A  *  E  D  L  *  Q  G  L  Q  *  R  G  D  H  P  N  H  F  Y  *  E  *  S  T  A  E  C  Y  V  Q  P  L  Q  *  S  P  W  P  *  N  H  Q   : G  S  G  S  *  *  *  R  *  V  P  E  T  T  Q  S  S  N  R  M  L  E  N  P  R  E  T  L  *  E  S  S  S  I  G  Y  Q  E  A  G  Y  R  R  M  G  S  Y  *  S  C  C  H  S  G  *  S  *  H  G  A  Y  Q  R  R  V  P  *  E  E  Q  C  Y  I  G  P  C  N  C  W  R  H  F  R  R  L  *  K  N  A  S  G  S  D  W  A  R  R  C  L  N  Y  M  C  *  N  L  K  I  I  K  K  T  L  L  I  F  *  S  L  N  L  L  L  *  C  M  V  C  T  L  R  V  W  F  C  V  Y  M  N  *  K  H  S  G  V  E  L  C  F  V  F  A  F  T  F  H  F  G  L  L  L  V  L  P  A  K  *  A  *  L  Q  L  W  L  E  R  I  L  F  L  Y  N  S  E  I  D  Y  V  S  W  F   </first_frame>
            <second_frame>  H  K  S  Y  V  T  L  Q  K  *  *  N  R  V  S  Q  *  L  L  R  W  Q  K  M  S  E  S  T  F  Y  V  P  T  Y  I  L  E  I  V  H  I  L  *  F  *  L  I  N  N  S  R  T  H  S  T  F  S  R  K  G  K  K  M  S  S  L  K  V  P  A  S  V  P  D  P  Y  E  D  A  E  Q  L  K  K  A  F  K   : G  W  G  T  N  E  E  L  I  I  Q  I  L  A  H  R  N  A  A  Q  R  K  L  I  R  D  S  Y  A  A  A  Y  G  E  D  L  L  K  D  L  D  S  E  L  T  S  D  F  Q  :  R  V  V  L  L  W  T  L  S  P  A  E  R  D  A  Y  L  V  N  E  A  T  K  R  L  T  A  S  N  W  V  I  M  E  I  A  C  T  R  S  S  D  D  L  F  K  A  R  Q  A  Y  H  A  R  Y  K  K  S  L  E  E  D  V  A  Y  H  T  S  G  D  F  R  K  :  L  L  V  P  L  I  T  A  F  R  Y  E  G  D  E  V  N  M  T  L  A  R  K  E  A  N  I  L  H  E  K  I  S  D  K  A  Y  N  D  E  E  I  I  R  I  I  S  T  R  S  K  A  Q  L  S  A  T  F  N  H  Y  N  D  H  H  G  H  E  I  I  K  :  D  L  E  A  D  D  D  D  E  Y  L  K  L  L  R  A  A  I  E  C  L  K  T  P  E  K  H  F  E  K  V  L  R  L  A  I  K  K  L  G  T  D  E  W  D  L  T  R  V  V  A  T  R  A  E  V  D  M  E  R  I  K  E  E  Y  H  R  R  N  S  V  T  L  D  R  A  I  A  G  D  T  S  G  D  Y  E  K  M  L  L  A  L  I  G  H  G  D  A  *  I  T  C  A  E  T  L  R  *  *  K  K  L  Y  L  F  S  E  V  *  I  C  F  Y  D  V  W  C  V  L  S  E  F  G  S  V  F  I  *  T  K  N  T  R  E  L  S  C  V  L  F  S  P  S  L  F  I  S  D  F  Y  W  F  C  L  L  N  K  H  S  F  N  F  G  L  N  G  S  C  F  F  I  T  Q  K  *  I  M  Y  L  G  S  </second_frame>
            <third_frame>   I  K  V  M  L  R  Y  K  N  N  K  I  V  Y  P  N  D  F  C  D  G  K  K  C  L  N  P  L  F  M  F  P  R  I  F  L  R  L  Y  I  Y  Y  S  F  D  S  *  I  I  Q  E  H  T  A  H  S  Q  E  R  E  K  K  C  L  V  L  K  F  Q  H  Q  F  Q  I  L  M  K  M  L  S  N  S  K  K  L  L  K  :  D  G  A  Q  M  R  N  L  L  F  R  F  W  L  I  G  M  Q  H  N  A  S  *  S  E  I  L  M  L  L  L  M  E  R  I  F  S  R  T  W  I  L  N  *  Q  V  I  F  S :   V  W  C  F  S  G  L  *  V  L  L  S  A  T  P  T  W  L  M  R  L  P  N  V  *  L  L  A  I  G  L  S  W  K  L  L  V  P  G  L  L  M  I  F  L  R  R  G  R  P  T  M  L  D  T  R  N  H  L  K  K  M  L  L  I  I  Q  V  G  I  S  V  S :   F  W  F  L  L  *  L  H  S  D  M  K  E  M  R  *  T  *  H  *  Q  E  R  K  Q  I  Y  C  M  R  R  S  L  T  R  L  T  M  T  R  R  S  S  E  S  F  L  L  G  V  K  H  S  *  V  L  R  S  T  T  T  M  I  T  M  A  M  K  S  S  R :   I  W  K  L  M  M  T  M  S  T  *  N  Y  S  E  Q  Q  *  N  A  *  K  P  Q  R  N  T  L  R  K  F  F  D  W  L  S  R  S  W  V  Q  T  N  G  I  L  L  E  L  L  P  L  G  L  K  L  T  W  S  V  S  K  K  S  T  I  G  G  T  V  L  H  W  T  V  Q  L  L  E  T  L  Q  E  T  M  K  K  C  F  W  L  *  L  G  T  E  M  L  E  L  H  V  L  K  P  *  D  N  K  K  N  S  T  Y  F  L  K  F  E  F  A  F  M  M  Y  G  V  Y  S  Q  S  L  V  L  C  L  Y  E  L  K  T  L  G  S  *  V  V  F  C  F  R  L  H  F  S  F  R  T  S  T  G  F  A  C  *  I  S  I  A  S  T  L  A  *  T  D  L  V  S  L  *  L  R  N  R  L  C  I  L  V  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0077O05.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75189" stop="75063"/>
                    <exon start="73803" stop="73658"/>
                    <exon start="73448" stop="73230"/>
                    <exon start="72460" stop="72248"/>
                    <exon start="72159" stop="71863"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LINNSRTHSTFSRKGKKMSSLKVPASVPDPYEDAEQLKKAFKGWGTNEELIIQILAHRNAAQRKLIRDSYAAAYGEDLLKDLDSELTSDFQRVVLLWTLSPAERDAYLVNEATKRLTASNWVIMEIACTRSSDDLFKARQAYHARYKKSLEEDVAYHTSGDFRKLLVPLITAFRYEGDEVNMTLARKEANILHEKISDKAYNDEEIIRIISTRSKAQLSATFNHYNDHHGHEIIKDLEADDDDEYLKLLRAAIECLKTPEKHFEKVLRLAIKKLGTDEWDLTRVVATRAEVDMERIKEEYHRRNSVTLDRAIAGDTSGDYEKMLLALIGHGDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75324" e_stop="75063"/>
            <exon e_start="73803" e_stop="73658"/>
            <exon e_start="73448" e_stop="73230"/>
            <exon e_start="72460" e_stop="72248"/>
            <exon e_start="72159" e_stop="71638"/>
            <exon e_start="71521" e_stop="71481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.568" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.613" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.523" e_score="1.000"/>
          <exon-only e_score="0.439"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75324" e_stop="75063" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.568">
            <gDNA_intron_boundary i_start="75062" i_stop="73804" i_length="1259"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73803" e_stop="73658" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="73657" i_stop="73449" i_length="209"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73448" e_stop="73230" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.613">
            <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72460" e_stop="72248" e_length="213"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72159" e_stop="71638" e_length="522"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.523">
            <gDNA_intron_boundary i_start="71637" i_stop="71522" i_length="116"/>
          </intron>
          <exon e_serial="6" e_score="0.439">
            <gDNA_exon_boundary e_start="71521" e_stop="71481" e_length="41"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75324" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75323" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75247" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75184" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="71961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75181" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75172" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="72089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75172" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="72089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75169" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="72038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75167" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="72123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75165" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75163" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="72019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75163" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75163" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75162" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75160" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75159" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75159" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75157" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="71978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75156" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="72089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75156" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75154" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75153" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75152" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75150" stop="75063"/>
              <exon start="73803" stop="73659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75146" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75143" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75142" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="71994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75142" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75138" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75132" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75131" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75131" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75131" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281308" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75130" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75121" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75110" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75090" stop="75063"/>
              <exon start="73803" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="72118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73787" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="71790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73704" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73683" stop="73658"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="71668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72447" stop="72248"/>
              <exon start="72159" stop="71739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72414" stop="72248"/>
              <exon start="72159" stop="71714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72398" stop="72248"/>
              <exon start="72159" stop="71714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72384" stop="72248"/>
              <exon start="72159" stop="71695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72133" stop="71695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72075" stop="71638"/>
              <exon start="71521" stop="71481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72072" stop="71695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71867" stop="71639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309089" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATAAAAGTTATGTTACGTTACAAAAATAATAAAATCGTGTATCCCAATGACTTTTGCGATGGCAAAAAATGTCTGAATCCACTTTTTATGTTCCCACGTATATTCTTGAGATTGTACATATACTATAGTTTTGACTCATAAATAATTCAAGAACACACAGCACATTCTCAAGAAAGGGAAAAAAAATGTCTAGTCTTAAAGTTCCAGCATCAGTTCCAGATCCTTATGAAGATGCTGAGCAACTCAAAAAAGCTTTTAAAG : GATGGGGCACAAATGAGGAACTTATTATTCAGATTCTGGCTCATAGGAATGCAGCACAACGCAAGTTAATCCGAGATTCTTATGCTGCTGCTTATGGAGAGGATCTTCTCAAGGACTTGGATTCTGAACTGACAAGTGATTTTCAG : CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG : CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG : GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTCATTTCGGACTTCTACTGGTTTTGCCTGCTAAATAAGCATAGCTTCAACTTTGGCTTG : GACCATTTTCGCCCATATACCACACTAGTACAAACATAAAA</gDNA_template>
            <first_frame> H  K  S  Y  V  T  L  Q  K  *  *  N  R  V  S  Q  *  L  L  R  W  Q  K  M  S  E  S  T  F  Y  V  P  T  Y  I  L  E  I  V  H  I  L  *  F  *  L  I  N  N  S  R  T  H  S  T  F  S  R  K  G  K  K  M  S  S  L  K  V  P  A  S  V  P  D  P  Y  E  D  A  E  Q  L  K  K  A  F  K   : G  W  G  T  N  E  E  L  I  I  Q  I  L  A  H  R  N  A  A  Q  R  K  L  I  R  D  S  Y  A  A  A  Y  G  E  D  L  L  K  D  L  D  S  E  L  T  S  D  F  Q  :  R  V  V  L  L  W  T  L  S  P  A  E  R  D  A  Y  L  V  N  E  A  T  K  R  L  T  A  S  N  W  V  I  M  E  I  A  C  T  R  S  S  D  D  L  F  K  A  R  Q  A  Y  H  A  R  Y  K  K  S  L  E  E  D  V  A  Y  H  T  S  G  D  F  R  K  :  L  L  V  P  L  I  T  A  F  R  Y  E  G  D  E  V  N  M  T  L  A  R  K  E  A  N  I  L  H  E  K  I  S  D  K  A  Y  N  D  E  E  I  I  R  I  I  S  T  R  S  K  A  Q  L  S  A  T  F  N  H  Y  N  D  H  H  G  H  E  I  I  K  :  D  L  E  A  D  D  D  D  E  Y  L  K  L  L  R  A  A  I  E  C  L  K  T  P  E  K  H  F  E  K  V  L  R  L  A  I  K  K  L  G  T  D  E  W  D  L  T  R  V  V  A  T  R  A  E  V  D  M  E  R  I  K  E  E  Y  H  R  R  N  S  V  T  L  D  R  A  I  A  G  D  T  S  G  D  Y  E  K  M  L  L  A  L  I  G  H  G  D  A  *  I  T  C  A  E  T  L  R  *  *  K  K  L  Y  L  F  S  E  V  *  I  C  F  Y  D  V  W  C  V  L  S  E  F  G  S  V  F  I  *  T  K  N  T  R  E  L  S  C  V  L  F  S  P  S  L  F  I  S  D  F  Y  W  F  C  L  L  N  K  H  S  F  N  F  G  L  :  D  H  F  R  P  Y  T  T  L  V  Q  T  *   </first_frame>
            <second_frame>  I  K  V  M  L  R  Y  K  N  N  K  I  V  Y  P  N  D  F  C  D  G  K  K  C  L  N  P  L  F  M  F  P  R  I  F  L  R  L  Y  I  Y  Y  S  F  D  S  *  I  I  Q  E  H  T  A  H  S  Q  E  R  E  K  K  C  L  V  L  K  F  Q  H  Q  F  Q  I  L  M  K  M  L  S  N  S  K  K  L  L  K  :  D  G  A  Q  M  R  N  L  L  F  R  F  W  L  I  G  M  Q  H  N  A  S  *  S  E  I  L  M  L  L  L  M  E  R  I  F  S  R  T  W  I  L  N  *  Q  V  I  F  S :   V  W  C  F  S  G  L  *  V  L  L  S  A  T  P  T  W  L  M  R  L  P  N  V  *  L  L  A  I  G  L  S  W  K  L  L  V  P  G  L  L  M  I  F  L  R  R  G  R  P  T  M  L  D  T  R  N  H  L  K  K  M  L  L  I  I  Q  V  G  I  S  V  S :   F  W  F  L  L  *  L  H  S  D  M  K  E  M  R  *  T  *  H  *  Q  E  R  K  Q  I  Y  C  M  R  R  S  L  T  R  L  T  M  T  R  R  S  S  E  S  F  L  L  G  V  K  H  S  *  V  L  R  S  T  T  T  M  I  T  M  A  M  K  S  S  R :   I  W  K  L  M  M  T  M  S  T  *  N  Y  S  E  Q  Q  *  N  A  *  K  P  Q  R  N  T  L  R  K  F  F  D  W  L  S  R  S  W  V  Q  T  N  G  I  L  L  E  L  L  P  L  G  L  K  L  T  W  S  V  S  K  K  S  T  I  G  G  T  V  L  H  W  T  V  Q  L  L  E  T  L  Q  E  T  M  K  K  C  F  W  L  *  L  G  T  E  M  L  E  L  H  V  L  K  P  *  D  N  K  K  N  S  T  Y  F  L  K  F  E  F  A  F  M  M  Y  G  V  Y  S  Q  S  L  V  L  C  L  Y  E  L  K  T  L  G  S  *  V  V  F  C  F  R  L  H  F  S  F  R  T  S  T  G  F  A  C  *  I  S  I  A  S  T  L  A  W :   T  I  F  A  H  I  P  H  *  Y  K  H  K  </second_frame>
            <third_frame>   *  K  L  C  Y  V  T  K  I  I  K  S  C  I  P  M  T  F  A  M  A  K  N  V  *  I  H  F  L  C  S  H  V  Y  S  *  D  C  T  Y  T  I  V  L  T  H  K  *  F  K  N  T  Q  H  I  L  K  K  G  K  K  N  V  *  S  *  S  S  S  I  S  S  R  S  L  *  R  C  *  A  T  Q  K  S  F  *  R :   M  G  H  K  *  G  T  Y  Y  S  D  S  G  S  *  E  C  S  T  T  Q  V  N  P  R  F  L  C  C  C  L  W  R  G  S  S  Q  G  L  G  F  *  T  D  K  *  F  S   : A  C  G  A  S  L  D  F  E  S  C  *  A  R  R  L  L  G  *  *  G  Y  Q  T  S  D  C  *  Q  L  G  Y  H  G  N  C  L  Y  Q  V  F  *  *  S  F  *  G  E  A  G  L  P  C  S  I  Q  E  I  T  *  R  R  C  C  L  S  Y  K  W  G  F  P  *   : A  F  G  S  S  Y  N  C  I  Q  I  *  R  R  *  G  E  H  D  I  S  K  K  G  S  K  Y  T  A  *  E  D  L  *  Q  G  L  Q  *  R  G  D  H  P  N  H  F  Y  *  E  *  S  T  A  E  C  Y  V  Q  P  L  Q  *  S  P  W  P  *  N  H  Q   : G  S  G  S  *  *  *  R  *  V  P  E  T  T  Q  S  S  N  R  M  L  E  N  P  R  E  T  L  *  E  S  S  S  I  G  Y  Q  E  A  G  Y  R  R  M  G  S  Y  *  S  C  C  H  S  G  *  S  *  H  G  A  Y  Q  R  R  V  P  *  E  E  Q  C  Y  I  G  P  C  N  C  W  R  H  F  R  R  L  *  K  N  A  S  G  S  D  W  A  R  R  C  L  N  Y  M  C  *  N  L  K  I  I  K  K  T  L  L  I  F  *  S  L  N  L  L  L  *  C  M  V  C  T  L  R  V  W  F  C  V  Y  M  N  *  K  H  S  G  V  E  L  C  F  V  F  A  F  T  F  H  F  G  L  L  L  V  L  P  A  K  *  A  *  L  Q  L  W  L   : G  P  F  S  P  I  Y  H  T  S  T  N  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0077O05.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75189" stop="75063"/>
                    <exon start="73803" stop="73658"/>
                    <exon start="73448" stop="73230"/>
                    <exon start="72460" stop="72248"/>
                    <exon start="72159" stop="71863"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LINNSRTHSTFSRKGKKMSSLKVPASVPDPYEDAEQLKKAFKGWGTNEELIIQILAHRNAAQRKLIRDSYAAAYGEDLLKDLDSELTSDFQRVVLLWTLSPAERDAYLVNEATKRLTASNWVIMEIACTRSSDDLFKARQAYHARYKKSLEEDVAYHTSGDFRKLLVPLITAFRYEGDEVNMTLARKEANILHEKISDKAYNDEEIIRIISTRSKAQLSATFNHYNDHHGHEIIKDLEADDDDEYLKLLRAAIECLKTPEKHFEKVLRLAIKKLGTDEWDLTRVVATRAEVDMERIKEEYHRRNSVTLDRAIAGDTSGDYEKMLLALIGHGDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="72466" e_stop="72248"/>
            <exon e_start="72159" e_stop="71598"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72466" e_stop="72248" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72159" e_stop="71598" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72466" stop="72248"/>
              <exon start="72159" stop="71598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72447" stop="72248"/>
              <exon start="72159" stop="71637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72447" stop="72248"/>
              <exon start="72159" stop="71739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72414" stop="72248"/>
              <exon start="72159" stop="71714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72398" stop="72248"/>
              <exon start="72159" stop="71714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72384" stop="72248"/>
              <exon start="72159" stop="71695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72133" stop="71695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72072" stop="71695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71867" stop="71639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309089" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACAGCTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG : GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTCATTTCGGACTTCTACTGGTTTTGCCTGCTAAATAAGCATAGCTTCAACTTTGGCTTGAACGGATCTTGTTTCTTTATAACTCAGAAATAGATTATGT</gDNA_template>
            <first_frame> E  Q  L  L  V  P  L  I  T  A  F  R  Y  E  G  D  E  V  N  M  T  L  A  R  K  E  A  N  I  L  H  E  K  I  S  D  K  A  Y  N  D  E  E  I  I  R  I  I  S  T  R  S  K  A  Q  L  S  A  T  F  N  H  Y  N  D  H  H  G  H  E  I  I  K  :  D  L  E  A  D  D  D  D  E  Y  L  K  L  L  R  A  A  I  E  C  L  K  T  P  E  K  H  F  E  K  V  L  R  L  A  I  K  K  L  G  T  D  E  W  D  L  T  R  V  V  A  T  R  A  E  V  D  M  E  R  I  K  E  E  Y  H  R  R  N  S  V  T  L  D  R  A  I  A  G  D  T  S  G  D  Y  E  K  M  L  L  A  L  I  G  H  G  D  A  *  I  T  C  A  E  T  L  R  *  *  K  K  L  Y  L  F  S  E  V  *  I  C  F  Y  D  V  W  C  V  L  S  E  F  G  S  V  F  I  *  T  K  N  T  R  E  L  S  C  V  L  F  S  P  S  L  F  I  S  D  F  Y  W  F  C  L  L  N  K  H  S  F  N  F  G  L  N  G  S  C  F  F  I  T  Q  K  *  I  M  </first_frame>
            <second_frame>  N  S  F  W  F  L  L  *  L  H  S  D  M  K  E  M  R  *  T  *  H  *  Q  E  R  K  Q  I  Y  C  M  R  R  S  L  T  R  L  T  M  T  R  R  S  S  E  S  F  L  L  G  V  K  H  S  *  V  L  R  S  T  T  T  M  I  T  M  A  M  K  S  S  R :   I  W  K  L  M  M  T  M  S  T  *  N  Y  S  E  Q  Q  *  N  A  *  K  P  Q  R  N  T  L  R  K  F  F  D  W  L  S  R  S  W  V  Q  T  N  G  I  L  L  E  L  L  P  L  G  L  K  L  T  W  S  V  S  K  K  S  T  I  G  G  T  V  L  H  W  T  V  Q  L  L  E  T  L  Q  E  T  M  K  K  C  F  W  L  *  L  G  T  E  M  L  E  L  H  V  L  K  P  *  D  N  K  K  N  S  T  Y  F  L  K  F  E  F  A  F  M  M  Y  G  V  Y  S  Q  S  L  V  L  C  L  Y  E  L  K  T  L  G  S  *  V  V  F  C  F  R  L  H  F  S  F  R  T  S  T  G  F  A  C  *  I  S  I  A  S  T  L  A  *  T  D  L  V  S  L  *  L  R  N  R  L  C </second_frame>
            <third_frame>   T  A  F  G  S  S  Y  N  C  I  Q  I  *  R  R  *  G  E  H  D  I  S  K  K  G  S  K  Y  T  A  *  E  D  L  *  Q  G  L  Q  *  R  G  D  H  P  N  H  F  Y  *  E  *  S  T  A  E  C  Y  V  Q  P  L  Q  *  S  P  W  P  *  N  H  Q   : G  S  G  S  *  *  *  R  *  V  P  E  T  T  Q  S  S  N  R  M  L  E  N  P  R  E  T  L  *  E  S  S  S  I  G  Y  Q  E  A  G  Y  R  R  M  G  S  Y  *  S  C  C  H  S  G  *  S  *  H  G  A  Y  Q  R  R  V  P  *  E  E  Q  C  Y  I  G  P  C  N  C  W  R  H  F  R  R  L  *  K  N  A  S  G  S  D  W  A  R  R  C  L  N  Y  M  C  *  N  L  K  I  I  K  K  T  L  L  I  F  *  S  L  N  L  L  L  *  C  M  V  C  T  L  R  V  W  F  C  V  Y  M  N  *  K  H  S  G  V  E  L  C  F  V  F  A  F  T  F  H  F  G  L  L  L  V  L  P  A  K  *  A  *  L  Q  L  W  L  E  R  I  L  F  L  Y  N  S  E  I  D  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0077O05.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72466" stop="72248"/>
                    <exon start="72159" stop="71863"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQLLVPLITAFRYEGDEVNMTLARKEANILHEKISDKAYNDEEIIRIISTRSKAQLSATFNHYNDHHGHEIIKDLEADDDDEYLKLLRAAIECLKTPEKHFEKVLRLAIKKLGTDEWDLTRVVATRAEVDMERIKEEYHRRNSVTLDRAIAGDTSGDYEKMLLALIGHGDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="73744" e_stop="73744"/>
            <exon e_start="73448" e_stop="73230"/>
            <exon e_start="72460" e_stop="72248"/>
            <exon e_start="72159" e_stop="71637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.714" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.613" e_score="0.995"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73744" e_stop="73744" e_length="1"/>
          </exon>
          <intron i_serial="1" don_prob="0.714" acc_prob="0.985">
            <gDNA_intron_boundary i_start="73743" i_stop="73449" i_length="295"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="73448" e_stop="73230" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.613">
            <gDNA_intron_boundary i_start="73229" i_stop="72461" i_length="769"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72460" e_stop="72248" e_length="213"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72247" i_stop="72160" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="72159" e_stop="71637" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73744" stop="73744"/>
              <exon start="73448" stop="73230"/>
              <exon start="72460" stop="72248"/>
              <exon start="72159" stop="71942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72447" stop="72248"/>
              <exon start="72159" stop="71637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72447" stop="72248"/>
              <exon start="72159" stop="71739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72414" stop="72248"/>
              <exon start="72159" stop="71714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72398" stop="72248"/>
              <exon start="72159" stop="71714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72384" stop="72248"/>
              <exon start="72159" stop="71695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72133" stop="71695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72072" stop="71695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71867" stop="71639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309089" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>C : CGTGTGGTGCTTCTCTGGACTTTGAGTCCTGCTGAGCGCGACGCCTACTTGGTTAATGAGGCTACCAAACGTCTGACTGCTAGCAATTGGGTTATCATGGAAATTGCTTGTACCAGGTCTTCTGATGATCTTTTTAAGGCGAGGCAGGCCTACCATGCTCGATACAAGAAATCACTTGAAGAAGATGTTGCTTATCATACAAGTGGGGATTTCCGTAAG : CTTTTGGTTCCTCTTATAACTGCATTCAGATATGAAGGAGATGAGGTGAACATGACATTAGCAAGAAAGGAAGCAAATATACTGCATGAGAAGATCTCTGACAAGGCTTACAATGACGAGGAGATCATCCGAATCATTTCTACTAGGAGTAAAGCACAGCTGAGTGCTACGTTCAACCACTACAATGATCACCATGGCCATGAAATCATCAAG : GATCTGGAAGCTGATGATGACGATGAGTACCTGAAACTACTCAGAGCAGCAATAGAATGCTTGAAAACCCCAGAGAAACACTTTGAGAAAGTTCTTCGATTGGCTATCAAGAAGCTGGGTACAGACGAATGGGATCTTACTAGAGTTGTTGCCACTCGGGCTGAAGTTGACATGGAGCGTATCAAAGAAGAGTACCATAGGAGGAACAGTGTTACATTGGACCGTGCAATTGCTGGAGACACTTCAGGAGACTATGAAAAAATGCTTCTGGCTCTGATTGGGCACGGAGATGCTTGAATTACATGTGCTGAAACCTTAAGATAATAAAAAAAACTCTACTTATTTTCTGAAGTTTGAATTTGCTTTTATGATGTATGGTGTGTACTCTCAGAGTTTGGTTCTGTGTTTATATGAACTAAAAACACTCGGGAGTTGAGTTGTGTTTTGTTTTCGCCTTCACTTTTCATTTCGGACTTCTACTGGTTTTGCCTGCTAAATAAGCATAGCTTCAACTTTGGCTTGA</gDNA_template>
            <first_frame>  : P  C  G  A  S  L  D  F  E  S  C  *  A  R  R  L  L  G  *  *  G  Y  Q  T  S  D  C  *  Q  L  G  Y  H  G  N  C  L  Y  Q  V  F  *  *  S  F  *  G  E  A  G  L  P  C  S  I  Q  E  I  T  *  R  R  C  C  L  S  Y  K  W  G  F  P  *   : A  F  G  S  S  Y  N  C  I  Q  I  *  R  R  *  G  E  H  D  I  S  K  K  G  S  K  Y  T  A  *  E  D  L  *  Q  G  L  Q  *  R  G  D  H  P  N  H  F  Y  *  E  *  S  T  A  E  C  Y  V  Q  P  L  Q  *  S  P  W  P  *  N  H  Q   : G  S  G  S  *  *  *  R  *  V  P  E  T  T  Q  S  S  N  R  M  L  E  N  P  R  E  T  L  *  E  S  S  S  I  G  Y  Q  E  A  G  Y  R  R  M  G  S  Y  *  S  C  C  H  S  G  *  S  *  H  G  A  Y  Q  R  R  V  P  *  E  E  Q  C  Y  I  G  P  C  N  C  W  R  H  F  R  R  L  *  K  N  A  S  G  S  D  W  A  R  R  C  L  N  Y  M  C  *  N  L  K  I  I  K  K  T  L  L  I  F  *  S  L  N  L  L  L  *  C  M  V  C  T  L  R  V  W  F  C  V  Y  M  N  *  K  H  S  G  V  E  L  C  F  V  F  A  F  T  F  H  F  G  L  L  L  V  L  P  A  K  *  A  *  L  Q  L  W  L   </first_frame>
            <second_frame>  :  R  V  V  L  L  W  T  L  S  P  A  E  R  D  A  Y  L  V  N  E  A  T  K  R  L  T  A  S  N  W  V  I  M  E  I  A  C  T  R  S  S  D  D  L  F  K  A  R  Q  A  Y  H  A  R  Y  K  K  S  L  E  E  D  V  A  Y  H  T  S  G  D  F  R  K  :  L  L  V  P  L  I  T  A  F  R  Y  E  G  D  E  V  N  M  T  L  A  R  K  E  A  N  I  L  H  E  K  I  S  D  K  A  Y  N  D  E  E  I  I  R  I  I  S  T  R  S  K  A  Q  L  S  A  T  F  N  H  Y  N  D  H  H  G  H  E  I  I  K  :  D  L  E  A  D  D  D  D  E  Y  L  K  L  L  R  A  A  I  E  C  L  K  T  P  E  K  H  F  E  K  V  L  R  L  A  I  K  K  L  G  T  D  E  W  D  L  T  R  V  V  A  T  R  A  E  V  D  M  E  R  I  K  E  E  Y  H  R  R  N  S  V  T  L  D  R  A  I  A  G  D  T  S  G  D  Y  E  K  M  L  L  A  L  I  G  H  G  D  A  *  I  T  C  A  E  T  L  R  *  *  K  K  L  Y  L  F  S  E  V  *  I  C  F  Y  D  V  W  C  V  L  S  E  F  G  S  V  F  I  *  T  K  N  T  R  E  L  S  C  V  L  F  S  P  S  L  F  I  S  D  F  Y  W  F  C  L  L  N  K  H  S  F  N  F  G  L  </second_frame>
            <third_frame>  :   V  W  C  F  S  G  L  *  V  L  L  S  A  T  P  T  W  L  M  R  L  P  N  V  *  L  L  A  I  G  L  S  W  K  L  L  V  P  G  L  L  M  I  F  L  R  R  G  R  P  T  M  L  D  T  R  N  H  L  K  K  M  L  L  I  I  Q  V  G  I  S  V  S :   F  W  F  L  L  *  L  H  S  D  M  K  E  M  R  *  T  *  H  *  Q  E  R  K  Q  I  Y  C  M  R  R  S  L  T  R  L  T  M  T  R  R  S  S  E  S  F  L  L  G  V  K  H  S  *  V  L  R  S  T  T  T  M  I  T  M  A  M  K  S  S  R :   I  W  K  L  M  M  T  M  S  T  *  N  Y  S  E  Q  Q  *  N  A  *  K  P  Q  R  N  T  L  R  K  F  F  D  W  L  S  R  S  W  V  Q  T  N  G  I  L  L  E  L  L  P  L  G  L  K  L  T  W  S  V  S  K  K  S  T  I  G  G  T  V  L  H  W  T  V  Q  L  L  E  T  L  Q  E  T  M  K  K  C  F  W  L  *  L  G  T  E  M  L  E  L  H  V  L  K  P  *  D  N  K  K  N  S  T  Y  F  L  K  F  E  F  A  F  M  M  Y  G  V  Y  S  Q  S  L  V  L  C  L  Y  E  L  K  T  L  G  S  *  V  V  F  C  F  R  L  H  F  S  F  R  T  S  T  G  F  A  C  *  I  S  I  A  S  T  L  A  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0077O05.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73448" stop="73230"/>
                    <exon start="72460" stop="72248"/>
                    <exon start="72159" stop="71863"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVVLLWTLSPAERDAYLVNEATKRLTASNWVIMEIACTRSSDDLFKARQAYHARYKKSLEEDVAYHTSGDFRKLLVPLITAFRYEGDEVNMTLARKEANILHEKISDKAYNDEEIIRIISTRSKAQLSATFNHYNDHHGHEIIKDLEADDDDEYLKLLRAAIECLKTPEKHFEKVLRLAIKKLGTDEWDLTRVVATRAEVDMERIKEEYHRRNSVTLDRAIAGDTSGDYEKMLLALIGHGDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="79077" PGL_stop="83653"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79077" e_stop="79427"/>
            <exon e_start="80005" e_stop="80290"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79077" e_stop="79427" e_length="351"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="79428" i_stop="80004" i_length="577"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80005" e_stop="80290" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79077" stop="79427"/>
              <exon start="80005" stop="80220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79094" stop="79427"/>
              <exon start="80005" stop="80207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79101" stop="79427"/>
              <exon start="80005" stop="80290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTCTCCTAATATTCCACCCACTTTCCTTTTCCTTTTTAGGTATATTCTCAACTCTTTTTCACCATTAATGGCGTTTTAGAGCATCACAAACCCCAAAAAAGTAGTGGAATTTGTTGTTGTCATAAAGGAGAATACTACTTATAGCTTTTTAGAAGTAATGGGTAGTGAAAATCAACAGCAATTTGAAGAGAATCTTCTTCATAATCATAATCATCAGGAGCAGCAGCAGCAGCAGAGGAAGAACCGTTCTTTAAGGAGTAAAGCTGCGCACTTTGTATCGGATGTTGCTACTGTTATTCTTAACCCCATATCTGATAAACCCTTAAAGCCCAGACCACCACCTTTGCCT : GAAGATGGATCTGATTCTGACGGAAGTAAGCATGAGTCAAATGCAGAGGGAGATGCCACTGATTTAGTTGACGGTCCTGATACATCTTCTTTCTCAGCGTTCCTATATTCACTGTTGTCGACCACAGGATCCGAGAGTAAGCCTAACACTATTGGAAAATATGATAAGCAAGATGATCGTGATGAGTCAATACCTGAACTTACAATGAGGGAACCTAGCAGAAGAAAAGGTATACTTTCCAGGGGTAAACATTCCCTCGGCAGAGCTCTTCACCAAGTTGCTAGAC</gDNA_template>
            <first_frame> L  S  P  N  I  P  P  T  F  L  F  L  F  R  Y  I  L  N  S  F  S  P  L  M  A  F  *  S  I  T  N  P  K  K  V  V  E  F  V  V  V  I  K  E  N  T  T  Y  S  F  L  E  V  M  G  S  E  N  Q  Q  Q  F  E  E  N  L  L  H  N  H  N  H  Q  E  Q  Q  Q  Q  Q  R  K  N  R  S  L  R  S  K  A  A  H  F  V  S  D  V  A  T  V  I  L  N  P  I  S  D  K  P  L  K  P  R  P  P  P  L  P  :  E  D  G  S  D  S  D  G  S  K  H  E  S  N  A  E  G  D  A  T  D  L  V  D  G  P  D  T  S  S  F  S  A  F  L  Y  S  L  L  S  T  T  G  S  E  S  K  P  N  T  I  G  K  Y  D  K  Q  D  D  R  D  E  S  I  P  E  L  T  M  R  E  P  S  R  R  K  G  I  L  S  R  G  K  H  S  L  G  R  A  L  H  Q  V  A  R  </first_frame>
            <second_frame>  F  L  L  I  F  H  P  L  S  F  S  F  L  G  I  F  S  T  L  F  H  H  *  W  R  F  R  A  S  Q  T  P  K  K  *  W  N  L  L  L  S  *  R  R  I  L  L  I  A  F  *  K  *  W  V  V  K  I  N  S  N  L  K  R  I  F  F  I  I  I  I  I  R  S  S  S  S  S  R  G  R  T  V  L  *  G  V  K  L  R  T  L  Y  R  M  L  L  L  L  F  L  T  P  Y  L  I  N  P  *  S  P  D  H  H  L  C  L :   K  M  D  L  I  L  T  E  V  S  M  S  Q  M  Q  R  E  M  P  L  I  *  L  T  V  L  I  H  L  L  S  Q  R  S  Y  I  H  C  C  R  P  Q  D  P  R  V  S  L  T  L  L  E  N  M  I  S  K  M  I  V  M  S  Q  Y  L  N  L  Q  *  G  N  L  A  E  E  K  V  Y  F  P  G  V  N  I  P  S  A  E  L  F  T  K  L  L  D </second_frame>
            <third_frame>   F  S  *  Y  S  T  H  F  P  F  P  F  *  V  Y  S  Q  L  F  F  T  I  N  G  V  L  E  H  H  K  P  Q  K  S  S  G  I  C  C  C  H  K  G  E  Y  Y  L  *  L  F  R  S  N  G  *  *  K  S  T  A  I  *  R  E  S  S  S  *  S  *  S  S  G  A  A  A  A  A  E  E  E  P  F  F  K  E  *  S  C  A  L  C  I  G  C  C  Y  C  Y  S  *  P  H  I  *  *  T  L  K  A  Q  T  T  T  F  A   : *  R  W  I  *  F  *  R  K  *  A  *  V  K  C  R  G  R  C  H  *  F  S  *  R  S  *  Y  I  F  F  L  S  V  P  I  F  T  V  V  D  H  R  I  R  E  *  A  *  H  Y  W  K  I  *  *  A  R  *  S  *  *  V  N  T  *  T  Y  N  E  G  T  *  Q  K  K  R  Y  T  F  Q  G  *  T  F  P  R  Q  S  S  S  P  S  C  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0077O05.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79158" stop="79427"/>
                    <exon start="80005" stop="80289"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITNPKKVVEFVVVIKENTTYSFLEVMGSENQQQFEENLLHNHNHQEQQQQQRKNRSLRSKAAHFVSDVATVILNPISDKPLKPRPPPLPEDGSDSDGSKHESNAEGDATDLVDGPDTSSFSAFLYSLLSTTGSESKPNTIGKYDKQDDRDESIPELTMREPSRRKGILSRGKHSLGRALHQVAR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79193" e_stop="79427"/>
            <exon e_start="80005" e_stop="80052"/>
            <exon e_start="80270" e_stop="80534"/>
            <exon e_start="80649" e_stop="80721"/>
            <exon e_start="81720" e_stop="81800"/>
            <exon e_start="81887" e_stop="81950"/>
            <exon e_start="82511" e_stop="82598"/>
            <exon e_start="83003" e_stop="83087"/>
            <exon e_start="83313" e_stop="83653"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.457" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.392" e_score="1.000"/>
          <exon-intron don_prob="0.770" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79193" e_stop="79427" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="79428" i_stop="80004" i_length="577"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80005" e_stop="80052" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="80053" i_stop="80269" i_length="217"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80270" e_stop="80534" e_length="265"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.978">
            <gDNA_intron_boundary i_start="80535" i_stop="80648" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80649" e_stop="80721" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="80722" i_stop="81719" i_length="998"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="81720" e_stop="81800" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.843" acc_prob="0.990">
            <gDNA_intron_boundary i_start="81801" i_stop="81886" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="81887" e_stop="81950" e_length="64"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.457">
            <gDNA_intron_boundary i_start="81951" i_stop="82510" i_length="560"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82511" e_stop="82598" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.392">
            <gDNA_intron_boundary i_start="82599" i_stop="83002" i_length="404"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="83003" e_stop="83087" e_length="85"/>
          </exon>
          <intron i_serial="8" don_prob="0.770" acc_prob="0.890">
            <gDNA_intron_boundary i_start="83088" i_stop="83312" i_length="225"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="83313" e_stop="83653" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79193" stop="79427"/>
              <exon start="80005" stop="80052"/>
              <exon start="80270" stop="80534"/>
              <exon start="80649" stop="80721"/>
              <exon start="81720" stop="81800"/>
              <exon start="81887" stop="81950"/>
              <exon start="82511" stop="82538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79194" stop="79427"/>
              <exon start="80005" stop="80052"/>
              <exon start="80270" stop="80534"/>
              <exon start="80649" stop="80673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80485" stop="80534"/>
              <exon start="80649" stop="80721"/>
              <exon start="81720" stop="81800"/>
              <exon start="81887" stop="81950"/>
              <exon start="82511" stop="82598"/>
              <exon start="83003" stop="83087"/>
              <exon start="83313" stop="83653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542436" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTGTCATAAAGGAGAATACTACTTATAGCTTTTTAGAAGTAATGGGTAGTGAAAATCAACAGCAATTTGAAGAGAATCTTCTTCATAATCATAATCATCAGGAGCAGCAGCAGCAGCAGAGGAAGAACCGTTCTTTAAGGAGTAAAGCTGCGCACTTTGTATCGGATGTTGCTACTGTTATTCTTAACCCCATATCTGATAAACCCTTAAAGCCCAGACCACCACCTTTGCCT : GAAGATGGATCTGATTCTGACGGAAGTAAGCATGAGTCAAATGCAGAG : CTCTTCACCAAGTTGCTAGACTAGGCGGCTTTAGGAATCAGGGTTCGGCAAAGGGCAGCTCTGATATGGTGTTTGATGATGGAAGTAATTCTAAAGTTTCCGGAGATAATCAAATACCTTTGGAAGATATGAATAAGAAACCTCTTCTGAACAATCTTCCGGGAACTTCTGAGCCTTCAGTTCTCCTCACTGAGAAGGCACGAATTTCTCTTTATGCTGCACTGCCTGTGCTTGTGCAGGACAGGAAGTGGGTCTTGTTATACAG : TACATGGAAGAATGGAATATCACTCTCGACTTTATACAGGAGAAGCCTACTCTGGCCTGGCATCAGTCTGCTG : GTTGTGGGGGACCATAATGGTGCTGTGTTTGGTGGGCTAGTTGATGCACCTTTAAAGCCAACAACAAAGAGAAGATATCAG : GGTACAAACAATTCATTTGTTTTCTCAAATGTATCTGGCCAACCTGTCATATTTCGTCCCACAG : GTGTCAATCGCTATTTTACTGTCTGTTCCACGGAGTATTTAGCTTTGGGAGGCGGTGGCCATTTTGCTCTCTACTTAGACGGGGATCT : GCTAACAGGTTCAAGTGCAACATCAGAAACTTATGGAAATTCTTGTTTGGCACATACTGAAGACTTTGAAGTTAAGGAAGTTGAG : TTATGGGGCTTTGTATATGCTTCCAAGTATGAAGAGATGGTTTCGATTTTGCGAACAGAGACACCTGGAATTTGCCGCTGGTAAACACAGTGTTAAAGATGCTTGCTTTCCAGTCTAAATGATTGTTTCTGTTTGGTGCCCATGGTTGCGGACAGCACCACATGGAATGCAGGATAGGTTTTGTACATATGTTTTCACATGTTCAGCAACAATTTTACACTTGTATAGGTGTGTTTCTTTACATGTACAGTGAACCATTTTGATAAAATTCTCTTTGCTTCGGTAAATGAGAATGAACGTGAGAGCTAAATGAAAATATTCATTAAACTGTTCTCCAGAAA</gDNA_template>
            <first_frame> C  C  H  K  G  E  Y  Y  L  *  L  F  R  S  N  G  *  *  K  S  T  A  I  *  R  E  S  S  S  *  S  *  S  S  G  A  A  A  A  A  E  E  E  P  F  F  K  E  *  S  C  A  L  C  I  G  C  C  Y  C  Y  S  *  P  H  I  *  *  T  L  K  A  Q  T  T  T  F  A   : *  R  W  I  *  F  *  R  K  *  A  *  V  K  C  R   : A  L  H  Q  V  A  R  L  G  G  F  R  N  Q  G  S  A  K  G  S  S  D  M  V  F  D  D  G  S  N  S  K  V  S  G  D  N  Q  I  P  L  E  D  M  N  K  K  P  L  L  N  N  L  P  G  T  S  E  P  S  V  L  L  T  E  K  A  R  I  S  L  Y  A  A  L  P  V  L  V  Q  D  R  K  W  V  L  L  Y  S :   T  W  K  N  G  I  S  L  S  T  L  Y  R  R  S  L  L  W  P  G  I  S  L  L  :  V  V  G  D  H  N  G  A  V  F  G  G  L  V  D  A  P  L  K  P  T  T  K  R  R  Y  Q  :  G  T  N  N  S  F  V  F  S  N  V  S  G  Q  P  V  I  F  R  P  T   : G  V  N  R  Y  F  T  V  C  S  T  E  Y  L  A  L  G  G  G  G  H  F  A  L  Y  L  D  G  D  L :   L  T  G  S  S  A  T  S  E  T  Y  G  N  S  C  L  A  H  T  E  D  F  E  V  K  E  V  E  :  L  W  G  F  V  Y  A  S  K  Y  E  E  M  V  S  I  L  R  T  E  T  P  G  I  C  R  W  *  T  Q  C  *  R  C  L  L  S  S  L  N  D  C  F  C  L  V  P  M  V  A  D  S  T  T  W  N  A  G  *  V  L  Y  I  C  F  H  M  F  S  N  N  F  T  L  V  *  V  C  F  F  T  C  T  V  N  H  F  D  K  I  L  F  A  S  V  N  E  N  E  R  E  S  *  M  K  I  F  I  K  L  F  S  R   </first_frame>
            <second_frame>  V  V  I  K  E  N  T  T  Y  S  F  L  E  V  M  G  S  E  N  Q  Q  Q  F  E  E  N  L  L  H  N  H  N  H  Q  E  Q  Q  Q  Q  Q  R  K  N  R  S  L  R  S  K  A  A  H  F  V  S  D  V  A  T  V  I  L  N  P  I  S  D  K  P  L  K  P  R  P  P  P  L  P  :  E  D  G  S  D  S  D  G  S  K  H  E  S  N  A  E  :  L  F  T  K  L  L  D  *  A  A  L  G  I  R  V  R  Q  R  A  A  L  I  W  C  L  M  M  E  V  I  L  K  F  P  E  I  I  K  Y  L  W  K  I  *  I  R  N  L  F  *  T  I  F  R  E  L  L  S  L  Q  F  S  S  L  R  R  H  E  F  L  F  M  L  H  C  L  C  L  C  R  T  G  S  G  S  C  Y  T   : V  H  G  R  M  E  Y  H  S  R  L  Y  T  G  E  A  Y  S  G  L  A  S  V  C  W :   L  W  G  T  I  M  V  L  C  L  V  G  *  L  M  H  L  *  S  Q  Q  Q  R  E  D  I  R :   V  Q  T  I  H  L  F  S  Q  M  Y  L  A  N  L  S  Y  F  V  P  Q  :  V  S  I  A  I  L  L  S  V  P  R  S  I  *  L  W  E  A  V  A  I  L  L  S  T  *  T  G  I   : C  *  Q  V  Q  V  Q  H  Q  K  L  M  E  I  L  V  W  H  I  L  K  T  L  K  L  R  K  L  S :   Y  G  A  L  Y  M  L  P  S  M  K  R  W  F  R  F  C  E  Q  R  H  L  E  F  A  A  G  K  H  S  V  K  D  A  C  F  P  V  *  M  I  V  S  V  W  C  P  W  L  R  T  A  P  H  G  M  Q  D  R  F  C  T  Y  V  F  T  C  S  A  T  I  L  H  L  Y  R  C  V  S  L  H  V  Q  *  T  I  L  I  K  F  S  L  L  R  *  M  R  M  N  V  R  A  K  *  K  Y  S  L  N  C  S  P  E  </second_frame>
            <third_frame>   L  S  *  R  R  I  L  L  I  A  F  *  K  *  W  V  V  K  I  N  S  N  L  K  R  I  F  F  I  I  I  I  I  R  S  S  S  S  S  R  G  R  T  V  L  *  G  V  K  L  R  T  L  Y  R  M  L  L  L  L  F  L  T  P  Y  L  I  N  P  *  S  P  D  H  H  L  C  L :   K  M  D  L  I  L  T  E  V  S  M  S  Q  M  Q  S :   S  S  P  S  C  *  T  R  R  L  *  E  S  G  F  G  K  G  Q  L  *  Y  G  V  *  *  W  K  *  F  *  S  F  R  R  *  S  N  T  F  G  R  Y  E  *  E  T  S  S  E  Q  S  S  G  N  F  *  A  F  S  S  P  H  *  E  G  T  N  F  S  L  C  C  T  A  C  A  C  A  G  Q  E  V  G  L  V  I  Q  :  Y  M  E  E  W  N  I  T  L  D  F  I  Q  E  K  P  T  L  A  W  H  Q  S  A   : G  C  G  G  P  *  W  C  C  V  W  W  A  S  *  C  T  F  K  A  N  N  K  E  K  I  S   : G  Y  K  Q  F  I  C  F  L  K  C  I  W  P  T  C  H  I  S  S  H  R :   C  Q  S  L  F  Y  C  L  F  H  G  V  F  S  F  G  R  R  W  P  F  C  S  L  L  R  R  G  S  :  A  N  R  F  K  C  N  I  R  N  L  W  K  F  L  F  G  T  Y  *  R  L  *  S  *  G  S  *   : V  M  G  L  C  I  C  F  Q  V  *  R  D  G  F  D  F  A  N  R  D  T  W  N  L  P  L  V  N  T  V  L  K  M  L  A  F  Q  S  K  *  L  F  L  F  G  A  H  G  C  G  Q  H  H  M  E  C  R  I  G  F  V  H  M  F  S  H  V  Q  Q  Q  F  Y  T  C  I  G  V  F  L  Y  M  Y  S  E  P  F  *  *  N  S  L  C  F  G  K  *  E  *  T  *  E  L  N  E  N  I  H  *  T  V  L  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0077O05.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80040" stop="80052"/>
                    <exon start="80270" stop="80534"/>
                    <exon start="80649" stop="80721"/>
                    <exon start="81720" stop="81800"/>
                    <exon start="81887" stop="81950"/>
                    <exon start="82511" stop="82598"/>
                    <exon start="83003" stop="83087"/>
                    <exon start="83313" stop="83396"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKCRALHQVARLGGFRNQGSAKGSSDMVFDDGSNSKVSGDNQIPLEDMNKKPLLNNLPGTSEPSVLLTEKARISLYAALPVLVQDRKWVLLYSTWKNGISLSTLYRRSLLWPGISLLVVGDHNGAVFGGLVDAPLKPTTKRRYQGTNNSFVFSNVSGQPVIFRPTGVNRYFTVCSTEYLALGGGGHFALYLDGDLLTGSSATSETYGNSCLAHTEDFEVKEVELWGFVYASKYEEMVSILRTETPGICRW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="95546" PGL_stop="95328"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95546" e_stop="95328"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="95546" e_stop="95328" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95546" stop="95328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATCACACCAGATTTCAGGGTGAGCTAAAGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGATGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAA</gDNA_template>
            <first_frame> S  S  H  Q  I  S  G  *  A  K  A  S  S  L  D  W  I  F  F  F  M  S  *  C  L  D  V  P  A  W  T  S  C  L  C  I  L  A  S  *  I  L  L  D  L  V  I  *  S  R  C  S  C  D  D  D  F  Q  I  L  G  I  I  I  V  V  E  F  L  E  V  I  E </first_frame>
            <second_frame>  H  H  T  R  F  Q  G  E  L  K  L  L  A  W  T  G  S  S  S  S  C  L  D  A  L  M  F  R  H  G  L  A  V  Y  V  F  *  L  L  R  Y  S  *  I  *  *  F  E  V  D  V  L  V  M  M  T  S  R  F  W  G  *  *  *  L  L  S  F  *  K  L  L   </second_frame>
            <third_frame>   I  T  P  D  F  R  V  S  *  S  F  *  L  G  L  D  L  L  L  H  V  L  M  P  *  C  S  G  M  D  *  L  F  M  Y  F  S  F  L  D  T  L  R  F  S  N  L  K  *  M  F  L  *  *  *  L  P  D  F  G  D  N  N  S  C  *  V  F  R  S  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0077O05.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="99746" PGL_stop="100576"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99746" e_stop="100576"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="99746" e_stop="100576" e_length="831"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99746" stop="100404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99815" stop="100576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99815" stop="100475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100218" stop="100548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATGCGAGGAAGAGGATACTTGTTCTTAATCGTTACCTTATTTAGTTGTCTGTAATCTATGCACATCCTAAAACTTCCACCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGCAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCTATTGTATAAGGGGGTATAGAAATGGGGCCAATACCCGGTTCAAGATCAATGTAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCATGGACTACCGAAACTGACTCAATTGACGGTACTTGGGTAGTGTCATCCCTGAGGTGTGCCAAGAAAGCTAAACAACCCTTACTAACCATTCTCTTAGCACGAAGAAAGGAGATGATACGAACCGGGTTGGAAGTGTAGTTACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATAACAACATCAGAT</gDNA_template>
            <first_frame> S  M  R  G  R  G  Y  L  F  L  I  V  T  L  F  S  C  L  *  S  M  H  I  L  K  L  P  P  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  C  S  W  A  F  N  S  L  N  S  A  G  A  I  V  *  G  G  I  E  M  G  P  I  P  G  S  R  S  M  *  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  W  T  T  E  T  D  S  I  D  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  Q  P  L  L  T  I  L  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  L  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  P  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  I  T  T  S  D </first_frame>
            <second_frame>  Q  C  E  E  E  D  T  C  S  *  S  L  P  Y  L  V  V  C  N  L  C  T  S  *  N  F  H  P  S  S  S  Q  T  K  P  E  H  P  K  G  M  H  L  V  *  *  S  L  C  S  T  T  L  A  V  G  P  L  T  L  L  T  P  R  E  L  L  Y  K  G  V  *  K  W  G  Q  Y  P  V  Q  D  Q  C  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  L  P  K  L  T  Q  L  T  V  L  G  *  C  H  P  *  G  V  P  R  K  L  N  N  P  Y  *  P  F  S  *  H  E  E  R  R  *  Y  E  P  G  W  K  C  S  Y  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  L  Q  N  L  E  K  A  K  S  Y  P  E  L  H  R  S  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  Q  K  S  P  D  Q  T  Y  I  L  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q   </second_frame>
            <third_frame>   N  A  R  K  R  I  L  V  L  N  R  Y  L  I  *  L  S  V  I  Y  A  H  P  K  T  S  T  L  L  L  H  K  Q  N  R  S  T  P  R  G  C  T  W  S  N  E  A  F  A  Q  Q  L  L  Q  L  G  L  *  L  S  *  L  R  G  S  Y  C  I  R  G  Y  R  N  G  A  N  T  R  F  K  I  N  V  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  M  D  Y  R  N  *  L  N  *  R  Y  L  G  S  V  I  P  E  V  C  Q  E  S  *  T  T  L  T  N  H  S  L  S  T  K  K  G  D  D  T  N  R  V  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  C  K  I  W  R  K  P  S  H  T  Q  N  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  N  N  I  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0077O05.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99998" stop="100198"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSISLSGGIPGRSAGNTSRNSWTTETDSIDGTWVVSSLRCAKKAKQPLLTILLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="101238" PGL_stop="99798"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101238" e_stop="101065"/>
            <exon e_start="100325" e_stop="99798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.891"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.891">
            <gDNA_exon_boundary e_start="101238" e_stop="101065" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101064" i_stop="100326" i_length="739"/>
          </intron>
          <exon e_serial="2" e_score="0.905">
            <gDNA_exon_boundary e_start="100325" e_stop="99798" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101238" stop="101065"/>
              <exon start="100325" stop="99798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAAGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGAACTTTCCAGATATGCCACTCAGCTTTGTTTCAGTCCATAAGAGCGGATTTGCCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTTTAGCCTTATAGGTAGCGACTACGGCAAAATCCTTTCAAG : AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTAACTACACTTCCAACCCGGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGACACTACCCAAGTACCGTCAATTGAGTCAGTTTCGGTAGTCCATGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTACATTGATCTTGAACCGGGTATTGGCCCCATTTCTATACCCCCTTATACAATAGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTGCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGGTGGAAGTTTTAGGATGTGCATAGATTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  *  G  *  V  S  *  T  F  Q  I  C  H  S  A  L  F  Q  S  I  R  A  D  L  P  F  C  E  G  V  E  V  R  I  A  D  F  *  P  Y  R  *  R  L  R  Q  N  P  F  K  :  K  W  L  T  S  M  *  F  W  V  *  L  G  F  L  Q  I  L  Q  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  T  R  F  V  S  S  P  F  F  V  L  R  E  W  L  V  R  V  V  *  L  S  W  H  T  S  G  M  T  L  P  K  Y  R  Q  L  S  Q  F  R  *  S  M  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  T  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  Q  *  L  P  R  S  *  E  S  *  R  P  N  C  K  S  C  *  A  K  A  S  L  D  Q  V  H  P  L  G  V  L  R  F  C  L  *  R  R  R  V  E  V  L  G  C  A  *  I  T </first_frame>
            <second_frame>  Q  G  K  M  S  V  T  A  Y  E  A  K  F  R  E  L  S  R  Y  A  T  Q  L  C  F  S  P  *  E  R  I  C  R  F  V  K  G  L  R  S  E  L  R  I  F  S  L  I  G  S  D  Y  G  K  I  L  S  R :   N  G  *  L  R  C  N  S  G  Y  D  L  A  F  S  K  F  C  N  L  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  P  G  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  G  L  F  S  F  L  G  T  P  Q  G  *  H  Y  P  S  T  V  N  *  V  S  F  G  S  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  H  *  S  *  T  G  Y  W  P  H  F  Y  T  P  L  Y  N  S  S  R  G  V  K  R  V  K  G  P  T  A  R  V  V  E  Q  R  L  H  *  T  K  C  I  P  L  G  C  S  G  F  V  C  E  E  E  G  W  K  F  *  D  V  H  R  L   </second_frame>
            <third_frame>   K  V  R  C  R  L  L  H  M  R  L  S  F  V  N  F  P  D  M  P  L  S  F  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  G  Q  N  C  G  F  L  A  L  *  V  A  T  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  N  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  H  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  Y  I  D  L  E  P  G  I  G  P  I  S  I  P  P  Y  T  I  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  G  G  S  F  R  M  C  I  D  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0077O05.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101092" stop="101065"/>
                    <exon start="100325" stop="99799"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VATTAKSFQEMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPGTDPLVWEGNYTSNPVRIISFLRAKRMVSKGCLAFLAHLRDDTTQVPSIESVSVVHEFLDVFPADLPGMPPDRDIDFYIDLEPGIGPISIPPYTIAPAELRELKAQLQELLSKGFIRPSASPWGAPVLFVKKKGGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="100518" e_stop="99858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="100518" e_stop="99858" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100518" stop="99858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTGGTCTGGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTAACTACACTTCCAACCCGGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGACACTACCCAAGTACCGTCAATTGAGTCAGTTTCGGTAGTCCATGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTACATTGATCTTGAACCGGGTATTGGCCCCATTTCTATACCCCCTTATACAATAGCTCCCGCGGAGTTAAGAGAGTTAAAGGCCCAACTGCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  N  G  L  N  L  H  C  E  L  L  D  M  P  I  R  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  G  L  V  T  F  V  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  N  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  H  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  Y  I  D  L  E  P  G  I  G  P  I  S  I  P  P  Y  T  I  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  </first_frame>
            <second_frame>  L  I  L  D  P  H  F  L  M  Y  L  P  H  L  L  M  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  K  Y  I  G  L  V  W  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  T  S  M  *  F  W  V  *  L  G  F  L  Q  I  L  Q  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  T  R  F  V  S  S  P  F  F  V  L  R  E  W  L  V  R  V  V  *  L  S  W  H  T  S  G  M  T  L  P  K  Y  R  Q  L  S  Q  F  R  *  S  M  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  T  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  Q  *  L  P  R  S  *  E  S  *  R  P  N  C  K  S  C  *  A  K  A  S  L  D  Q  V  H  P  L  G </second_frame>
            <third_frame>   *  S  W  I  H  I  F  L  C  I  F  L  I  C  *  W  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  K  S  I  *  V  W  S  G  D  F  C  G  E  Q  Y  S  C  R  L  G  Y  L  R  N  G  *  L  R  C  N  S  G  Y  D  L  A  F  S  K  F  C  N  L  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  P  G  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  G  L  F  S  F  L  G  T  P  Q  G  *  H  Y  P  S  T  V  N  *  V  S  F  G  S  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  H  *  S  *  T  G  Y  W  P  H  F  Y  T  P  L  Y  N  S  S  R  G  V  K  R  V  K  G  P  T  A  R  V  V  E  Q  R  L  H  *  T  K  C  I  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0077O05.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100518" stop="99859"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFANGLNLHCELLDMPIRVSTPVGESVIVEKVYRSGLVTFVGSNTHVDLVILEMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPGTDPLVWEGNYTSNPVRIISFLRAKRMVSKGCLAFLAHLRDDTTQVPSIESVSVVHEFLDVFPADLPGMPPDRDIDFYIDLEPGIGPISIPPYTIAPAELRELKAQLQELLSKGFIRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="101865" PGL_stop="101312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101865" e_stop="101312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="101865" e_stop="101312" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101865" stop="101312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGAAAGGGAAAATGAGCAAGTACAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGCTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGACTACTGTGGCTCCCTGCATGGATGCCTCATTGTAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCATACGATTTTCTGGTTGAGTTTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCGCATGTGGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  W  Y  *  G  G  D  S  S  T  N  *  G  S  G  K  R  G  *  G  K  G  K  *  A  S  T  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  A  I  *  S  R  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  D  Y  C  G  S  L  H  G  C  L  I  V  N  R  H  I  S  S  S  D  Y  R  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  I  R  F  S  G  *  V  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  A  C  G  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  R  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  T  T  V  A  P  C  M  D  A  S  L  *  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  E  F  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  Q  L  R  K  W  *  E  R  V  R  K  G  K  M  S  K  Y  R  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  C  K  *  A  H  F  L  V  *  L  Q  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  H  T  I  F  W  L  S  F  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  R  M  W  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0077O05.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101600" stop="101313"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVEFHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0077O05.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101864" stop="101601"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSGTRAVTPPPTEEVVREGEERENEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQAPEVQHATTVAPCMDASL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="102224" PGL_stop="101939"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102224" e_stop="101939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="102224" e_stop="101939" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102224" stop="101939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTTGTGTTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACCGCGCCAACATCAACATCAGCAAGACAAGATGCATCTGAGCCAGCCACTGAGACTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  C  V  I  T  W  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  S  T  S  A  R  Q  D  A  S  E  P  A  T  E  T  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  P  R  Q  H  Q  H  Q  Q  D  K  M  H  L  S  Q  P  L  R  L  * </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  L  C  Y  Y  L  D  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  R  A  N  I  N  I  S  K  T  R  C  I  *  A  S  H  *  D  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0077O05.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102175" stop="101939"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFFLSFVLLLGSNWYLGDTNWYLTIFTLFRRWLELEQRPRQHQHQQDKMHLSQPLRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="106711" PGL_stop="107130"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106711" e_stop="107130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="106711" e_stop="107130" e_length="420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106711" stop="107130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106711" stop="107004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106711" stop="106988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATACACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTTACTGCAATTGTATAATTCACAATTGTATAATTCTTTGACCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATAGATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACATAATTATACACTTCTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTCTGGGAGAGAGGCGCTGGCAAATTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACCCTAACTATTCCATTTATTTTAGGTTGTTAG</gDNA_template>
            <first_frame> C  I  A  R  R  Y  M  F  F  S  R  F  I  Q  K  Q  K  H  N  I  H  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  F  D  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  R  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  *  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  R  R  W  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  T  I  P  F  I  L  G  C  * </first_frame>
            <second_frame>  V  *  Q  E  D  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  L  L  Q  L  Y  N  S  Q  L  Y  N  S  L  T  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  D  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  H  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  W  E  R  G  A  G  K  F  *  L  T  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  F  *  V  V   </second_frame>
            <third_frame>   Y  S  K  K  I  Y  V  F  L  S  L  Y  T  K  T  E  T  Q  Y  T  H  F  C  C  I  K  L  E  K  I  V  F  Y  C  N  C  I  I  H  N  C  I  I  L  *  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  *  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  I  I  I  H  F  C  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  S  G  R  E  A  L  A  N  F  S  *  R  L  L  W  S  T  I  K  S  N  P  N  Y  S  I  Y  F  R  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0077O05.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="129073" PGL_stop="109504"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129073" e_stop="128928"/>
            <exon e_start="123024" e_stop="122886"/>
            <exon e_start="121887" e_stop="121792"/>
            <exon e_start="121603" e_stop="121462"/>
            <exon e_start="115151" e_stop="115056"/>
            <exon e_start="114080" e_stop="113986"/>
            <exon e_start="113039" e_stop="112878"/>
            <exon e_start="112071" e_stop="111991"/>
            <exon e_start="111892" e_stop="111671"/>
            <exon e_start="111554" e_stop="111420"/>
            <exon e_start="110681" e_stop="110601"/>
            <exon e_start="110294" e_stop="110208"/>
            <exon e_start="110112" e_stop="110005"/>
            <exon e_start="109836" e_stop="109504"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.639" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.436" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.467" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="129073" e_stop="128928" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="128927" i_stop="123025" i_length="5903"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123024" e_stop="122886" e_length="139"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="122885" i_stop="121888" i_length="998"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121887" e_stop="121792" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.993">
            <gDNA_intron_boundary i_start="121791" i_stop="121604" i_length="188"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121603" e_stop="121462" e_length="142"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121461" i_stop="115152" i_length="6310"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="115151" e_stop="115056" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="115055" i_stop="114081" i_length="975"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="114080" e_stop="113986" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="113985" i_stop="113040" i_length="946"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="113039" e_stop="112878" e_length="162"/>
          </exon>
          <intron i_serial="7" don_prob="0.639" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112877" i_stop="112072" i_length="806"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="112071" e_stop="111991" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.436" acc_prob="0.996">
            <gDNA_intron_boundary i_start="111990" i_stop="111893" i_length="98"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="111892" e_stop="111671" e_length="222"/>
          </exon>
          <intron i_serial="9" don_prob="0.467" acc_prob="0.829">
            <gDNA_intron_boundary i_start="111670" i_stop="111555" i_length="116"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="111554" e_stop="111420" e_length="135"/>
          </exon>
          <intron i_serial="10" don_prob="0.888" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111419" i_stop="110682" i_length="738"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="110681" e_stop="110601" e_length="81"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="0.928">
            <gDNA_intron_boundary i_start="110600" i_stop="110295" i_length="306"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="110294" e_stop="110208" e_length="87"/>
          </exon>
          <intron i_serial="12" don_prob="0.920" acc_prob="0.985">
            <gDNA_intron_boundary i_start="110207" i_stop="110113" i_length="95"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="110112" e_stop="110005" e_length="108"/>
          </exon>
          <intron i_serial="13" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="110004" i_stop="109837" i_length="168"/>
          </intron>
          <exon e_serial="14" e_score="0.976">
            <gDNA_exon_boundary e_start="109836" e_stop="109504" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129073" stop="128928"/>
              <exon start="123024" stop="122886"/>
              <exon start="121887" stop="121792"/>
              <exon start="121603" stop="121462"/>
              <exon start="115151" stop="115056"/>
              <exon start="114080" stop="113986"/>
              <exon start="113039" stop="112878"/>
              <exon start="112071" stop="111991"/>
              <exon start="111892" stop="111671"/>
              <exon start="111554" stop="111420"/>
              <exon start="110681" stop="110601"/>
              <exon start="110294" stop="110208"/>
              <exon start="110112" stop="110005"/>
              <exon start="109836" stop="109504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112916" stop="112878"/>
              <exon start="112071" stop="111991"/>
              <exon start="111892" stop="111671"/>
              <exon start="111554" stop="111420"/>
              <exon start="110681" stop="110601"/>
              <exon start="110294" stop="110208"/>
              <exon start="110112" stop="110005"/>
              <exon start="109836" stop="109813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111821" stop="111671"/>
              <exon start="111554" stop="111420"/>
              <exon start="110681" stop="110651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110052" stop="110005"/>
              <exon start="109836" stop="109541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109818" stop="109544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238813" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTAACCAGTAACCGCAATCACTTTTTCTTCATTTCAGAAGAAGCGAGAAAAAAAAATTGCGGACAATGTGTGGAATACTTGCAATTTTCGGTTGCACTGATAATTCTCATGCCAAGCGTTCAAGAGTAATCGAACTATCAAGAAG : GTTGCGCCATAGAGGACCTGACTGGAGTGGACTGCATAGCCATGAGGACTGTTACCTTGCTCATCAACGATTGGCAATAGTAGACCCAACTTCAGGAGATCAACCGTTGTATAATGAGGACAAGACCATTGTTGTTGCG : GTAAATGGAGAGATCTACAACCATAAGGAATTACGGGAGAAACTGAAGTCCCATCAGTTTCGAACTGAAAGTGATTGTGAAGTTATTGCCCATCTT : TATGAAGAATATGGAGAAAACTTCGTTGACATGTTGGATGGGATGTTCTCTTTTGTTCTTCTTGATACCCGGGATAAAAGTTTCATCGCTGCTCGGGATGCCATTGGCATTACACCCCTTTATATGGGGTGGGGTCTTGATG : GATCCATATGGTTTTCCTCGGAGATGAAAGCCTTAAGTGATGATTGTGAACGATTTGTTAGCTTCCTTCCCGGTCATATTTATTCAAGCAAAAATG : GAGGACTTAGAAGATGGTACAACCCACCATGGTTTTCGGAAACCATTCCTTCTACTCCATATGATCCCCTTGTCTTACGGAAGGCTTTTGAGAAG : GCTGTAGTTAAGAGACTCATGACGGATGTACCATTTGGTGTGCTTCTCTCTGGCGGACTGGATTCTTCACTTGTTGCTGCAGTGGCTAGCCGCTATTTGGCTGATACAGATGCCGGTCGACAATGGGGATCCCAGTTGCATACGTTTTGCGTAGGCTTGAAG : GGTTCTCCTGATCTGAAAGCTGCCAGAGAGGTGGCAGACTACATTGGAACTCGTCACCATGAGTTTCACTTTACAGTGCAG : GAAGGAATTGATGCCTTAGAGGAAGTCATATATCATGTTGAAACATATGATGTGACCACTATCAGAGCCAGTACACCAATGTTTCTCATGTCTCGGAAGATAAAGTCATTGGGTGTGAAAATGGTTTTATCAGGTGAAGGTTCTGATGAAATTTTTGGTGGTTATTTATATTTCCACAAGGCACCCAACAAAGAGGAGTTTCACCAAGAAACTTGTAGAAAG : ATTAAAGCACTTCATCTTTATGATTGCTTGAGGGCCAATAAATCTACTTCAGCTTGGGGTGTTGAAGCTCGTGTACCTTTCTTGGATAAAGAATTCATCAATATTGCAATGAACATTGATCCGGAATGGAAAATG : ATCCGACCTGACCTCGGAAGAATAGAAAAGTGGGTTGTACGTAATGCTTTTGACGATGATCAGAATCCTTATCTGCCAAAG : CATATTTTGTATAGGCAGAAGGAACAGTTCAGTGATGGAGTTGGCTACAGTTGGATTGATGGCTTGAAGGATCACGCAAACAGTCAA : GTTTCTGATTCTATGTTAGCGAATGCAAGTTTTGTTTACCCTCATAACACACCCACAACCAAGGAAGGGTACTACTATAGAACTATTTTCGAGCGATATTTCCCCAAG : GCTGCTGCAAGAGAAACTGTTCCTGGTGGTCCAAGTGTGGCCTGCAGCACTGCAAAAGCAGTAGAATGGGATGCCGCTTGGTCCAAGAATCTAGATCCATCCGGTCGAGCTGCTCTCGGTGTTCATGAAGCTGCTTATGAGGTTAAAGAACTATGAAGTTGATAAAGCTGTAGTAGCTGTTTGATTGTATATCTTCATTCAAAAACCTGACTTGTTCCACATTTGACTTCTTTTACGAGTTTGAATTCTTTGCTTCTGGTTTTACAATTACCAAAGTTTATTCTACTTGAGAAGAAATATGACGAATATGTGTTATTCATGACATGAAAGCAA</gDNA_template>
            <first_frame> C  N  Q  *  P  Q  S  L  F  L  H  F  R  R  S  E  K  K  K  L  R  T  M  C  G  I  L  A  I  F  G  C  T  D  N  S  H  A  K  R  S  R  V  I  E  L  S  R  R :   L  R  H  R  G  P  D  W  S  G  L  H  S  H  E  D  C  Y  L  A  H  Q  R  L  A  I  V  D  P  T  S  G  D  Q  P  L  Y  N  E  D  K  T  I  V  V  A  :  V  N  G  E  I  Y  N  H  K  E  L  R  E  K  L  K  S  H  Q  F  R  T  E  S  D  C  E  V  I  A  H  L  :  Y  E  E  Y  G  E  N  F  V  D  M  L  D  G  M  F  S  F  V  L  L  D  T  R  D  K  S  F  I  A  A  R  D  A  I  G  I  T  P  L  Y  M  G  W  G  L  D   : G  S  I  W  F  S  S  E  M  K  A  L  S  D  D  C  E  R  F  V  S  F  L  P  G  H  I  Y  S  S  K  N   : G  G  L  R  R  W  Y  N  P  P  W  F  S  E  T  I  P  S  T  P  Y  D  P  L  V  L  R  K  A  F  E  K  :  A  V  V  K  R  L  M  T  D  V  P  F  G  V  L  L  S  G  G  L  D  S  S  L  V  A  A  V  A  S  R  Y  L  A  D  T  D  A  G  R  Q  W  G  S  Q  L  H  T  F  C  V  G  L  K  :  G  S  P  D  L  K  A  A  R  E  V  A  D  Y  I  G  T  R  H  H  E  F  H  F  T  V  Q  :  E  G  I  D  A  L  E  E  V  I  Y  H  V  E  T  Y  D  V  T  T  I  R  A  S  T  P  M  F  L  M  S  R  K  I  K  S  L  G  V  K  M  V  L  S  G  E  G  S  D  E  I  F  G  G  Y  L  Y  F  H  K  A  P  N  K  E  E  F  H  Q  E  T  C  R  K  :  I  K  A  L  H  L  Y  D  C  L  R  A  N  K  S  T  S  A  W  G  V  E  A  R  V  P  F  L  D  K  E  F  I  N  I  A  M  N  I  D  P  E  W  K  M  :  I  R  P  D  L  G  R  I  E  K  W  V  V  R  N  A  F  D  D  D  Q  N  P  Y  L  P  K  :  H  I  L  Y  R  Q  K  E  Q  F  S  D  G  V  G  Y  S  W  I  D  G  L  K  D  H  A  N  S  Q  :  V  S  D  S  M  L  A  N  A  S  F  V  Y  P  H  N  T  P  T  T  K  E  G  Y  Y  Y  R  T  I  F  E  R  Y  F  P  K  :  A  A  A  R  E  T  V  P  G  G  P  S  V  A  C  S  T  A  K  A  V  E  W  D  A  A  W  S  K  N  L  D  P  S  G  R  A  A  L  G  V  H  E  A  A  Y  E  V  K  E  L  *  S  *  *  S  C  S  S  C  L  I  V  Y  L  H  S  K  T  *  L  V  P  H  L  T  S  F  T  S  L  N  S  L  L  L  V  L  Q  L  P  K  F  I  L  L  E  K  K  Y  D  E  Y  V  L  F  M  T  *  K  Q </first_frame>
            <second_frame>  V  T  S  N  R  N  H  F  F  F  I  S  E  E  A  R  K  K  N  C  G  Q  C  V  E  Y  L  Q  F  S  V  A  L  I  I  L  M  P  S  V  Q  E  *  S  N  Y  Q  E   : G  C  A  I  E  D  L  T  G  V  D  C  I  A  M  R  T  V  T  L  L  I  N  D  W  Q  *  *  T  Q  L  Q  E  I  N  R  C  I  M  R  T  R  P  L  L  L  R :   *  M  E  R  S  T  T  I  R  N  Y  G  R  N  *  S  P  I  S  F  E  L  K  V  I  V  K  L  L  P  I  F :   M  K  N  M  E  K  T  S  L  T  C  W  M  G  C  S  L  L  F  F  L  I  P  G  I  K  V  S  S  L  L  G  M  P  L  A  L  H  P  F  I  W  G  G  V  L  M  :  D  P  Y  G  F  P  R  R  *  K  P  *  V  M  I  V  N  D  L  L  A  S  F  P  V  I  F  I  Q  A  K  M  :  E  D  L  E  D  G  T  T  H  H  G  F  R  K  P  F  L  L  L  H  M  I  P  L  S  Y  G  R  L  L  R  R :   L  *  L  R  D  S  *  R  M  Y  H  L  V  C  F  S  L  A  D  W  I  L  H  L  L  L  Q  W  L  A  A  I  W  L  I  Q  M  P  V  D  N  G  D  P  S  C  I  R  F  A  *  A  *  R :   V  L  L  I  *  K  L  P  E  R  W  Q  T  T  L  E  L  V  T  M  S  F  T  L  Q  C  R :   K  E  L  M  P  *  R  K  S  Y  I  M  L  K  H  M  M  *  P  L  S  E  P  V  H  Q  C  F  S  C  L  G  R  *  S  H  W  V  *  K  W  F  Y  Q  V  K  V  L  M  K  F  L  V  V  I  Y  I  S  T  R  H  P  T  K  R  S  F  T  K  K  L  V  E  R :   L  K  H  F  I  F  M  I  A  *  G  P  I  N  L  L  Q  L  G  V  L  K  L  V  Y  L  S  W  I  K  N  S  S  I  L  Q  *  T  L  I  R  N  G  K  * :   S  D  L  T  S  E  E  *  K  S  G  L  Y  V  M  L  L  T  M  I  R  I  L  I  C  Q  S :   I  F  C  I  G  R  R  N  S  S  V  M  E  L  A  T  V  G  L  M  A  *  R  I  T  Q  T  V  K :   F  L  I  L  C  *  R  M  Q  V  L  F  T  L  I  T  H  P  Q  P  R  K  G  T  T  I  E  L  F  S  S  D  I  S  P  R :   L  L  Q  E  K  L  F  L  V  V  Q  V  W  P  A  A  L  Q  K  Q  *  N  G  M  P  L  G  P  R  I  *  I  H  P  V  E  L  L  S  V  F  M  K  L  L  M  R  L  K  N  Y  E  V  D  K  A  V  V  A  V  *  L  Y  I  F  I  Q  K  P  D  L  F  H  I  *  L  L  L  R  V  *  I  L  C  F  W  F  Y  N  Y  Q  S  L  F  Y  L  R  R  N  M  T  N  M  C  Y  S  *  H  E  S   </second_frame>
            <third_frame>   *  P  V  T  A  I  T  F  S  S  F  Q  K  K  R  E  K  K  I  A  D  N  V  W  N  T  C  N  F  R  L  H  *  *  F  S  C  Q  A  F  K  S  N  R  T  I  K  K  :  V  A  P  *  R  T  *  L  E  W  T  A  *  P  *  G  L  L  P  C  S  S  T  I  G  N  S  R  P  N  F  R  R  S  T  V  V  *  *  G  Q  D  H  C  C  C   : G  K  W  R  D  L  Q  P  *  G  I  T  G  E  T  E  V  P  S  V  S  N  *  K  *  L  *  S  Y  C  P  S   : L  *  R  I  W  R  K  L  R  *  H  V  G  W  D  V  L  F  C  S  S  *  Y  P  G  *  K  F  H  R  C  S  G  C  H  W  H  Y  T  P  L  Y  G  V  G  S  *  W :   I  H  M  V  F  L  G  D  E  S  L  K  *  *  L  *  T  I  C  *  L  P  S  R  S  Y  L  F  K  Q  K  W :   R  T  *  K  M  V  Q  P  T  M  V  F  G  N  H  S  F  Y  S  I  *  S  P  C  L  T  E  G  F  *  E   : G  C  S  *  E  T  H  D  G  C  T  I  W  C  A  S  L  W  R  T  G  F  F  T  C  C  C  S  G  *  P  L  F  G  *  Y  R  C  R  S  T  M  G  I  P  V  A  Y  V  L  R  R  L  E   : G  F  S  *  S  E  S  C  Q  R  G  G  R  L  H  W  N  S  S  P  *  V  S  L  Y  S  A   : G  R  N  *  C  L  R  G  S  H  I  S  C  *  N  I  *  C  D  H  Y  Q  S  Q  Y  T  N  V  S  H  V  S  E  D  K  V  I  G  C  E  N  G  F  I  R  *  R  F  *  *  N  F  W  W  L  F  I  F  P  Q  G  T  Q  Q  R  G  V  S  P  R  N  L  *  K   : D  *  S  T  S  S  L  *  L  L  E  G  Q  *  I  Y  F  S  L  G  C  *  S  S  C  T  F  L  G  *  R  I  H  Q  Y  C  N  E  H  *  S  G  M  E  N   : D  P  T  *  P  R  K  N  R  K  V  G  C  T  *  C  F  *  R  *  S  E  S  L  S  A  K   : A  Y  F  V  *  A  E  G  T  V  Q  *  W  S  W  L  Q  L  D  *  W  L  E  G  S  R  K  Q  S   : S  F  *  F  Y  V  S  E  C  K  F  C  L  P  S  *  H  T  H  N  Q  G  R  V  L  L  *  N  Y  F  R  A  I  F  P  Q   : G  C  C  K  R  N  C  S  W  W  S  K  C  G  L  Q  H  C  K  S  S  R  M  G  C  R  L  V  Q  E  S  R  S  I  R  S  S  C  S  R  C  S  *  S  C  L  *  G  *  R  T  M  K  L  I  K  L  *  *  L  F  D  C  I  S  S  F  K  N  L  T  C  S  T  F  D  F  F  Y  E  F  E  F  F  A  S  G  F  T  I  T  K  V  Y  S  T  *  E  E  I  *  R  I  C  V  I  H  D  M  K  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0077O05.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129061" stop="128928"/>
                    <exon start="123024" stop="122886"/>
                    <exon start="121887" stop="121792"/>
                    <exon start="121603" stop="121462"/>
                    <exon start="115151" stop="115056"/>
                    <exon start="114080" stop="113986"/>
                    <exon start="113039" stop="112878"/>
                    <exon start="112071" stop="111991"/>
                    <exon start="111892" stop="111671"/>
                    <exon start="111554" stop="111420"/>
                    <exon start="110681" stop="110601"/>
                    <exon start="110294" stop="110208"/>
                    <exon start="110112" stop="110005"/>
                    <exon start="109836" stop="109681"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1731</number_coding_nucleotides>
                  <number_encoded_amino_acids>577</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQSLFLHFRRSEKKKLRTMCGILAIFGCTDNSHAKRSRVIELSRRLRHRGPDWSGLHSHEDCYLAHQRLAIVDPTSGDQPLYNEDKTIVVAVNGEIYNHKELREKLKSHQFRTESDCEVIAHLYEEYGENFVDMLDGMFSFVLLDTRDKSFIAARDAIGITPLYMGWGLDGSIWFSSEMKALSDDCERFVSFLPGHIYSSKNGGLRRWYNPPWFSETIPSTPYDPLVLRKAFEKAVVKRLMTDVPFGVLLSGGLDSSLVAAVASRYLADTDAGRQWGSQLHTFCVGLKGSPDLKAAREVADYIGTRHHEFHFTVQEGIDALEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKEFINIAMNIDPEWKMIRPDLGRIEKWVVRNAFDDDQNPYLPKHILYRQKEQFSDGVGYSWIDGLKDHANSQVSDSMLANASFVYPHNTPTTKEGYYYRTIFERYFPKAAARETVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHEAAYEVKEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 250 chains have been computed
$ 
$ memory statistics:
$ 260824 bytes spliced alignments in total
$ 101 spliced alignments have been stored
$ 2582 bytes was the average size of a spliced alignment
$ 27472 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1616 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 285 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:38:06
-->
