<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 17:37:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M31-F" ref_strand="+" ref_description="SGN-M31-F TG287-F [rflp_markers_forward]">
      <seq>acactatactcgatcgctagttgaatcagctgttcgagcctggaggacaaaataccctacttctaaagttgatgattgtgcagttgtttgcctttttcttgattcaaactcaaacaacttgtccactgcttccaatacagaagacagtgacaagactgtctcaatgaaagcaaatgaagttggtgccaagacaggtgatgcctcaggtccaactgcatttactcgttctggaactgttcgagaagttgaagtttcagaagaagagatagaggaagcatcagaacatgaggaactgctctcagaggtgggggcggaatggtctgcactggaaggggtttcccggctgaacacattattgacactgccaaggtttgtgcctgacaaggacgagaattaaactgtctggaatcgaactcaaagaagcaacagagggtgagatttccaagtttggatttatttctttcggttatttttcaatttttatttagttccatccattttaaggtctcacatatctatctactgggagggaaaaaaaataggggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0078E04.1" temp_strand="+" temp_description="C04HBa0078E04.1  CT990559.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0078E04 sequenced_by:sanger upload_account_name:uk">
        <position start="106057" stop="107202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106354" g_stop="106902" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078E04.1" gen_strand="+" ref_id="SGN-M31-F" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M31-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106354" e_stop="106902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTGCAGCTCGATCGCTAGTTGAATCAGCTGTTCGAGCCTGGAGGACAAAATACCCTACTTCTAAAGTTGATGATTGTGCAGTTGTTTGCCTTTTTCTTGATTCAAACTCAAACAACTTGTCCACTGCTTCCAATACAGAAGACAGTGACAAGACTGTCTCAATGAAAGCAAATGAAGTTGGTGCCAAGACAGGTGATGCCTCAGGTCCAACTGCATTTACTCGTTCTGGAACTGTTCGAGAAGTTGAAGTTTCAGAAGAAGAGATAGAGGAAGCATCAGAACATGAGGAACTGCTCTCAGAGGTGGGGGCGGAATGGTCTGCACTGGAAGGGGTTTCCCGGCTGAACACATTATTGACACTGCCAAGGTTTGTGCCTGACAAGGACGAGAATTAAACTGTCTGGAATCGAACTCAAAGAAGCAACAGAGGGTGAGATTTCCAAGTTTGGATTTATTTCTTTCGGTTATTTTTCAATTTTTATTTAGTTCCATCCATTTTAAGGTCTCACATATCTATCTACTGGGAGGGAAAAAAAATAGGGGCAT</genome_strand>
        <mrna_strand>ACACTATA-CTCGATCGCTAGTTGAATCAGCTGTTCGAGCCTGGAGGACAAAATACCCTACTTCTAAAGTTGATGATTGTGCAGTTGTTTGCCTTTTTCTTGATTCAAACTCAAACAACTTGTCCACTGCTTCCAATACAGAAGACAGTGACAAGACTGTCTCAATGAAAGCAAATGAAGTTGGTGCCAAGACAGGTGATGCCTCAGGTCCAACTGCATTTACTCGTTCTGGAACTGTTCGAGAAGTTGAAGTTTCAGAAGAAGAGATAGAGGAAGCATCAGAACATGAGGAACTGCTCTCAGAGGTGGGGGCGGAATGGTCTGCACTGGAAGGGGTTTCCCGGCTGAACACATTATTGACACTGCCAAGGTTTGTGCCTGACAAGGACGAGAATTAAACTGTCTGGAATCGAACTCAAAGAAGCAACAGAGGGTGAGATTTCCAAGTTTGGATTTATTTCTTTCGGTTATTTTTCAATTTTTATTTAGTTCCATCCATTTTAAGGTCTCACATATCTATCTACTGGGAGGGAAAAAAAATAGGGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M31-R" ref_strand="+" ref_description="SGN-M31-R TG287-R [rflp_markers_reverse]">
      <seq>ctgccaaacgattggtacaatgataaattcatgggatttgccatctgtgtggtgtctgaccaagaaacaacatggttatcagttcatgaaggttacctacaggaaatgccaggcatttcgattgagtttacaatcaaaagccacctacggaggagcacgagttgcctaatgaacattggttttgtagggacaaacaagaatgttgcttcagatcacacatgccttgcctatgtggcatttgaagaatactggtcaatgtacaaaaaccacttagacaccccaaacaattggtatcaaatcgatttttctgcaaactcattgaggaaacatatattcctaaaaagttggggaattcgtctagtgtacactgatgacttacagagtttcacatcttgagcgatttccagatgaggtgtgttctctctgctttatatgcatgcctggcttttgtaagtattttgaaaataataaagcaaatgttatactaaaacatctcaaccccatatattaacaaagtgcaaacgttgatcaaagagatacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0078E04.1" temp_strand="-" temp_description="C04HBa0078E04.1  CT990559.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0078E04 sequenced_by:sanger upload_account_name:uk">
        <position start="108017" stop="106876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107717" g_stop="107176" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0078E04.1" gen_strand="-" ref_id="SGN-M31-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078E04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M31-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107717" e_stop="107176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCAAACGATTGGTACAATGATAAATTCATGGGATTTGCCATCTGTGTGGTGTCTGACCAAGAAACAACATGGTTATCAGTTCATGAAGGTTACCTACAGGAAATGCCAGGCATTTCGATTGAGTTTACAATCAAAAGCCACCTACGGAGGAGCACGAGTTGCCTAATGAACATTGGTTTTGTAGGGACAAACAAGAATGTTGCTTCAGATCACACATGCCTTGCCTATGTGGCATTTGAAGAATACTGGTCAATGTACAAAAACCACTTAGACACCCCAAACAATTGGTATCAAATCGATTTTTCTGCAAACTCATTGAGGAAACATATATTCCTAAAAAGTTGGGGAATTCGTCTAGTGTACACTGATGACTTACAGAGTTTCACATCTTGAGCGATTTCCAGATGAGGTGTGTTCTCTCTGCTTTATATGCATGCCTGGCTTTTGTAAGTATTTTGAAAATAATAAAGCAAATGTTATACTAAAACATCTCAACCCCATATATTAACAAAGTGCAAACGTTGATCAAAGAGATACGA</genome_strand>
        <mrna_strand>CTGCCAAACGATTGGTACAATGATAAATTCATGGGATTTGCCATCTGTGTGGTGTCTGACCAAGAAACAACATGGTTATCAGTTCATGAAGGTTACCTACAGGAAATGCCAGGCATTTCGATTGAGTTTACAATCAAAAGCCACCTACGGAGGAGCACGAGTTGCCTAATGAACATTGGTTTTGTAGGGACAAACAAGAATGTTGCTTCAGATCACACATGCCTTGCCTATGTGGCATTTGAAGAATACTGGTCAATGTACAAAAACCACTTAGACACCCCAAACAATTGGTATCAAATCGATTTTTCTGCAAACTCATTGAGGAAACATATATTCCTAAAAAGTTGGGGAATTCGTCTAGTGTACACTGATGACTTACAGAGTTTCACATCTTGAGCGATTTCCAGATGAGGTGTGTTCTCTCTGCTTTATATGCATGCCTGGCTTTTGTAAGTATTTTGAAAATAATAAAGCAAATGTTATACTAAAACATCTCAACCCCATATATTAACAAAGTGCAAACGTTGATCAAAGAGATACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6958" ref_strand="+" ref_description="SGN-M6958 C2_At1g65230 [cosii_markers]">
      <seq>taattagtaatcatgaagaaacaaacaatatgaccatttcttctcttcttcttcctcctcctcctcctttcatcaattacaataataataataataatatttatggaaagtctatttccattcatcaacctcatcgattttcgttccgagttatcaatgattcgaatagaacagagttagctactgaagatgctgataaacttgtagatggaatggattttggggaattgtgtgatgagtttgaatgcattagtagcccttctgtggaagctactgctaggcagctagttcgagatattctcgaactacgtgaaggcaatcgtgccctcggtacctttgctgtctctgtcaagtataaggatccagtgagaagttttacaggacgagacaagtacaagagaccattatggataactgatgctctgcagaatcctaaaccgagtgtgcaagaaatggtgatgttatcaacaagtgtgttgaatattaagtggacaataaaaggaaaagcaaagtcattgattggtagcataggaggggatttgatgatcaaagtaaattcaagattcactttgaatcaaataagtggacaagtagttgagcatgaagaggaatgggatttatcaggatcatccatcattgctcaagcttatttctgggcatcgcgacgactatttgctactgttgaagctggaaaagatgtggttgatattgttaatgacttgagttctaaatctgctaaagagaataaaaacatggatgtttatcctgacccttatggtgatccagcaaagttctttcaaagggatgacagtttccaaagagatttttaccaaattgcattgctgctggctgttatatattttgtcgtacagttcttgaggacaactttatgagactcctaattttaacacttgtataattgtaattattaaatctatgtttctataaaaaaaaaaaaaaaaaaaaaaactcgagactagttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0078E04-w2W8p/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0078E04.1" temp_strand="+" temp_description="C04HBa0078E04.1  CT990559.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0078E04 sequenced_by:sanger upload_account_name:uk">
        <position start="112383" stop="116062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112683" g_stop="112835" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112836" i_stop="112939" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112940" g_stop="113148" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="359" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113149" i_stop="113368" i_length="220">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113369" g_stop="113449" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="440" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113450" i_stop="113952" i_length="503">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113953" g_stop="114303" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="791" r_length="351" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114304" i_stop="114958" i_length="655">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114959" g_stop="115114" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="948" r_length="157" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="949" polyA_stop="970"/>
      <MATCH_line gen_id="C04HBa0078E04.1" gen_strand="+" ref_id="SGN-M6958" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>950</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0078E04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112683" e_stop="112835"/>
          <exon e_start="112940" e_stop="113148"/>
          <exon e_start="113369" e_stop="113449"/>
          <exon e_start="113953" e_stop="114303"/>
          <exon e_start="114959" e_stop="115114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTAGTAATCATGAAGAAACAAACAATATGACCATTTCTTCTCTTCTTCTTCCTCCTCCTCCTCCTCCTTTCATCAATTACAATAATAATAATAATAATATTTATGGAAAGTCTATTTCCATTCATCAACCTCATCGATTTTCGTTCCGAGGTAAAATGACAAGTTTAAAGTTTATCATTTTTTTTTTGTAAAAAAATAAAATACTGAATTCAGTTGAACCGATCTCATTACTCTAATGTGTGTGTGTGTGGCAGTTATCAATGATTCGAATAGAACAGAGTTAGCTACTGAAGATGCTGATAAACTTGTAGATGGAATGGATTTTGGGGAATTGTGTGATGAGTTTGAATGCATTAGTAGCCCTTCTGTGGAAGCTACTGCTAGGCAGCTAGTTCGAGATATTCTCGAACTACGTGAAGGCAATCGTGCCCTCGGTACCTTTGCTGTCTCTGTCAAGTATAAGGTACGTGTGCGGTGTGTGTATATATATATATGTTGAGATACTCGTAATGATGTCACACTTTTAAACAACATGATGATTTACGTTGTCAGTGTATATAAGTTCATAACTAATTTGATAAGACATTGACAAACAAGCAAATAACTTGTGTAAAATGCAAGTCAACGTTCGATTATCTACTAATCTTCTACGTTAATGTACTGTGTCACACAATGAAATGCAGGATCCAGTGAGAAGTTTTACAGGACGAGACAAGTACAAGAGACCATTATGGATAACTGATGCTCTGCAGAATCCTAAACCGGTAACGTTTTAACATCTCTTTCATTTCTACAAGTTTTATATATTTATATAAACGAAGACATATATAAATGCAACATATTATGATTGTTTTAGTATAGTTTTCTACATATCGTCATCATGATTTGCAAATTTTAGCTTCCGCATGACACTCTGATTATGTAGCTAAGCCCCTGACCTGAACTTTAAGTCGTTGCACACTTCGCTCATGGGGAGTCTATAGCATTCAATAATATCGTCATCATGATTTGCAATTATTAGCTTTCTCTGATTATGTAGCTAAGCCCCTGGCCTGAGCTTAAGTCGTTGCACCGTTCTCTCATCAGGAGTAGTAGGCTATAGCATTCAGTAACATTGTATAGTACATATCGTTATCATGTTTTGCAATTATTAGCTTCCGCATGACACTCTGATTATGTAGCTAAGCCCCTGACCTGAACTTTAAGTCGTTGCACTTTTCGCTCATGGGGAGTCTATAACATTGTATTGTATTGTATTGGTATGCAGAGTGTGCAAGAAATGGTGATGTTATCAACAAGTGTGTTGAATATTAAGTGGACAATAAAAGGAAAAGCAAAGTCATTGATTGGTAGCATAGGAGGGGATTTGATGATCAAAGTAAATTCAAGATTCACTTTGAATCAAATAAGTGGACAAGTAGTTGAGCATGAAGAGGAATGGGATTTATCAGGATCATCCATCATTGCTCAAGCTTATTTCTGGGCATCGCGACGACTATTCGCTACTGTTGAAGCTGGAAAAGATGTGGTTGATATTGTTAATGACTTGAGTTCTAAATCTGCTAAAGAGAATAAAAACATGGATGTTTATCCTGACCCTTATGGTGATCCAGCGAAGGTATTTCTTCTTTATAAAGTCTCAAAATCTTGAAATTATTTTACTGTCCAAATTCATAGGCTTAATTAGATATTGATGGCAGACACTTTTGTTCAATTTCACATAGCTAAGAACATTCTTTTTACCCTTTTTCGTTTAGATTATTTAATAGACACAATATATATACAAGTCCTTTTAACTTGGTCTCAGTTTGCATCTATACCTTCTCACCTTGAGTATGCACAAGTATACTTGAACTTGTATAAAGTTGAACAAGTATACACACATGTCCTACATTGACATAATACACATAGGATGTCGTGTAGGATGTGAATTGCCTCATAGGACGCCAAGTTTGACGTGTGTATACTTGCTCAACTCTATACAAGTTTAGGTGTCTGCTTGTGCATACCAAAGTTGGAAGATATTTATGGCAGATGAAGCCTAGTTAAATGACACGTTTATGAACTATGATTTATTTATAACATACAAAATGTCTGTAATTTGATTTAAACTACTAATTGTAAAAAAAAAATTCTCTTGAACTATACGTGTTTGCAGTCAAATATCACCACATAAATTGTGACCATAAAAAAATATAATTTTGGAGATTATGTTTTATATATGAAGAAAATTTTGCATCTGACAAAAATTGTGTACCTGTATGAGGATGCAGTTCTTTCAAAGGGATGACAGTTTCCAAAGAGATTTTTACCAAATTGCATTGCTGCTGGCTGTTATATATTTTGTCGTACAGTTCTTGAGGACAACTTTATGAG-CTCCTAATTTTAACACTTGTATAATTGTAATTATTAAATCTATGTTTCTATAC</genome_strand>
        <mrna_strand>TAATTAGTAATCATGAAGAAACAAACAATATGACCATTTCTTCTCTTCTTCTTCCTCCTCCTCCTCCT---TTCATCAATTACAATAATAATAATAATAATATTTATGGAAAGTCTATTTCCATTCATCAACCTCATCGATTTTCGTTCCGAG........................................................................................................TTATCAATGATTCGAATAGAACAGAGTTAGCTACTGAAGATGCTGATAAACTTGTAGATGGAATGGATTTTGGGGAATTGTGTGATGAGTTTGAATGCATTAGTAGCCCTTCTGTGGAAGCTACTGCTAGGCAGCTAGTTCGAGATATTCTCGAACTACGTGAAGGCAATCGTGCCCTCGGTACCTTTGCTGTCTCTGTCAAGTATAAG............................................................................................................................................................................................................................GATCCAGTGAGAAGTTTTACAGGACGAGACAAGTACAAGAGACCATTATGGATAACTGATGCTCTGCAGAATCCTAAACCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTGCAAGAAATGGTGATGTTATCAACAAGTGTGTTGAATATTAAGTGGACAATAAAAGGAAAAGCAAAGTCATTGATTGGTAGCATAGGAGGGGATTTGATGATCAAAGTAAATTCAAGATTCACTTTGAATCAAATAAGTGGACAAGTAGTTGAGCATGAAGAGGAATGGGATTTATCAGGATCATCCATCATTGCTCAAGCTTATTTCTGGGCATCGCGACGACTATTTGCTACTGTTGAAGCTGGAAAAGATGTGGTTGATATTGTTAATGACTTGAGTTCTAAATCTGCTAAAGAGAATAAAAACATGGATGTTTATCCTGACCCTTATGGTGATCCAGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTCAAAGGGATGACAGTTTCCAAAGAGATTTTTACCAAATTGCATTGCTGCTGGCTGTTATATATTTTGTCGTACAGTTCTTGAGGACAACTTTATGAGACTCCTAATTTTAACACTTGTATAATTGTAATTATTAAATCTATGTTTCTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="106354" PGL_stop="106902"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106354" e_stop="106902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="106354" e_stop="106902" e_length="549"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106354" stop="106902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M31-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTCTGCAGCTCGATCGCTAGTTGAATCAGCTGTTCGAGCCTGGAGGACAAAATACCCTACTTCTAAAGTTGATGATTGTGCAGTTGTTTGCCTTTTTCTTGATTCAAACTCAAACAACTTGTCCACTGCTTCCAATACAGAAGACAGTGACAAGACTGTCTCAATGAAAGCAAATGAAGTTGGTGCCAAGACAGGTGATGCCTCAGGTCCAACTGCATTTACTCGTTCTGGAACTGTTCGAGAAGTTGAAGTTTCAGAAGAAGAGATAGAGGAAGCATCAGAACATGAGGAACTGCTCTCAGAGGTGGGGGCGGAATGGTCTGCACTGGAAGGGGTTTCCCGGCTGAACACATTATTGACACTGCCAAGGTTTGTGCCTGACAAGGACGAGAATTAAACTGTCTGGAATCGAACTCAAAGAAGCAACAGAGGGTGAGATTTCCAAGTTTGGATTTATTTCTTTCGGTTATTTTTCAATTTTTATTTAGTTCCATCCATTTTAAGGTCTCACATATCTATCTACTGGGAGGGAAAAAAAATAGGGGCAT</gDNA_template>
            <first_frame> R  L  Q  L  D  R  *  L  N  Q  L  F  E  P  G  G  Q  N  T  L  L  L  K  L  M  I  V  Q  L  F  A  F  F  L  I  Q  T  Q  T  T  C  P  L  L  P  I  Q  K  T  V  T  R  L  S  Q  *  K  Q  M  K  L  V  P  R  Q  V  M  P  Q  V  Q  L  H  L  L  V  L  E  L  F  E  K  L  K  F  Q  K  K  R  *  R  K  H  Q  N  M  R  N  C  S  Q  R  W  G  R  N  G  L  H  W  K  G  F  P  G  *  T  H  Y  *  H  C  Q  G  L  C  L  T  R  T  R  I  K  L  S  G  I  E  L  K  E  A  T  E  G  E  I  S  K  F  G  F  I  S  F  G  Y  F  S  I  F  I  *  F  H  P  F  *  G  L  T  Y  L  S  T  G  R  E  K  K  *  G  H </first_frame>
            <second_frame>  V  C  S  S  I  A  S  *  I  S  C  S  S  L  E  D  K  I  P  Y  F  *  S  *  *  L  C  S  C  L  P  F  S  *  F  K  L  K  Q  L  V  H  C  F  Q  Y  R  R  Q  *  Q  D  C  L  N  E  S  K  *  S  W  C  Q  D  R  *  C  L  R  S  N  C  I  Y  S  F  W  N  C  S  R  S  *  S  F  R  R  R  D  R  G  S  I  R  T  *  G  T  A  L  R  G  G  G  G  M  V  C  T  G  R  G  F  P  A  E  H  I  I  D  T  A  K  V  C  A  *  Q  G  R  E  L  N  C  L  E  S  N  S  K  K  Q  Q  R  V  R  F  P  S  L  D  L  F  L  S  V  I  F  Q  F  L  F  S  S  I  H  F  K  V  S  H  I  Y  L  L  G  G  K  K  N  R  G   </second_frame>
            <third_frame>   S  A  A  R  S  L  V  E  S  A  V  R  A  W  R  T  K  Y  P  T  S  K  V  D  D  C  A  V  V  C  L  F  L  D  S  N  S  N  N  L  S  T  A  S  N  T  E  D  S  D  K  T  V  S  M  K  A  N  E  V  G  A  K  T  G  D  A  S  G  P  T  A  F  T  R  S  G  T  V  R  E  V  E  V  S  E  E  E  I  E  E  A  S  E  H  E  E  L  L  S  E  V  G  A  E  W  S  A  L  E  G  V  S  R  L  N  T  L  L  T  L  P  R  F  V  P  D  K  D  E  N  *  T  V  W  N  R  T  Q  R  S  N  R  G  *  D  F  Q  V  W  I  Y  F  F  R  L  F  F  N  F  Y  L  V  P  S  I  L  R  S  H  I  S  I  Y  W  E  G  K  K  I  G  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078E04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106356" stop="106751"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAARSLVESAVRAWRTKYPTSKVDDCAVVCLFLDSNSNNLSTASNTEDSDKTVSMKANEVGAKTGDASGPTAFTRSGTVREVEVSEEEIEEASEHEELLSEVGAEWSALEGVSRLNTLLTLPRFVPDKDEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="107717" PGL_stop="107176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107717" e_stop="107176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107717" e_stop="107176" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107717" stop="107176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M31-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGCCAAACGATTGGTACAATGATAAATTCATGGGATTTGCCATCTGTGTGGTGTCTGACCAAGAAACAACATGGTTATCAGTTCATGAAGGTTACCTACAGGAAATGCCAGGCATTTCGATTGAGTTTACAATCAAAAGCCACCTACGGAGGAGCACGAGTTGCCTAATGAACATTGGTTTTGTAGGGACAAACAAGAATGTTGCTTCAGATCACACATGCCTTGCCTATGTGGCATTTGAAGAATACTGGTCAATGTACAAAAACCACTTAGACACCCCAAACAATTGGTATCAAATCGATTTTTCTGCAAACTCATTGAGGAAACATATATTCCTAAAAAGTTGGGGAATTCGTCTAGTGTACACTGATGACTTACAGAGTTTCACATCTTGAGCGATTTCCAGATGAGGTGTGTTCTCTCTGCTTTATATGCATGCCTGGCTTTTGTAAGTATTTTGAAAATAATAAAGCAAATGTTATACTAAAACATCTCAACCCCATATATTAACAAAGTGCAAACGTTGATCAAAGAGATACGA</gDNA_template>
            <first_frame> L  P  N  D  W  Y  N  D  K  F  M  G  F  A  I  C  V  V  S  D  Q  E  T  T  W  L  S  V  H  E  G  Y  L  Q  E  M  P  G  I  S  I  E  F  T  I  K  S  H  L  R  R  S  T  S  C  L  M  N  I  G  F  V  G  T  N  K  N  V  A  S  D  H  T  C  L  A  Y  V  A  F  E  E  Y  W  S  M  Y  K  N  H  L  D  T  P  N  N  W  Y  Q  I  D  F  S  A  N  S  L  R  K  H  I  F  L  K  S  W  G  I  R  L  V  Y  T  D  D  L  Q  S  F  T  S  *  A  I  S  R  *  G  V  F  S  L  L  Y  M  H  A  W  L  L  *  V  F  *  K  *  *  S  K  C  Y  T  K  T  S  Q  P  H  I  L  T  K  C  K  R  *  S  K  R  Y   </first_frame>
            <second_frame>  C  Q  T  I  G  T  M  I  N  S  W  D  L  P  S  V  W  C  L  T  K  K  Q  H  G  Y  Q  F  M  K  V  T  Y  R  K  C  Q  A  F  R  L  S  L  Q  S  K  A  T  Y  G  G  A  R  V  A  *  *  T  L  V  L  *  G  Q  T  R  M  L  L  Q  I  T  H  A  L  P  M  W  H  L  K  N  T  G  Q  C  T  K  T  T  *  T  P  Q  T  I  G  I  K  S  I  F  L  Q  T  H  *  G  N  I  Y  S  *  K  V  G  E  F  V  *  C  T  L  M  T  Y  R  V  S  H  L  E  R  F  P  D  E  V  C  S  L  C  F  I  C  M  P  G  F  C  K  Y  F  E  N  N  K  A  N  V  I  L  K  H  L  N  P  I  Y  *  Q  S  A  N  V  D  Q  R  D  T  </second_frame>
            <third_frame>   A  K  R  L  V  Q  *  *  I  H  G  I  C  H  L  C  G  V  *  P  R  N  N  M  V  I  S  S  *  R  L  P  T  G  N  A  R  H  F  D  *  V  Y  N  Q  K  P  P  T  E  E  H  E  L  P  N  E  H  W  F  C  R  D  K  Q  E  C  C  F  R  S  H  M  P  C  L  C  G  I  *  R  I  L  V  N  V  Q  K  P  L  R  H  P  K  Q  L  V  S  N  R  F  F  C  K  L  I  E  E  T  Y  I  P  K  K  L  G  N  S  S  S  V  H  *  *  L  T  E  F  H  I  L  S  D  F  Q  M  R  C  V  L  S  A  L  Y  A  C  L  A  F  V  S  I  L  K  I  I  K  Q  M  L  Y  *  N  I  S  T  P  Y  I  N  K  V  Q  T  L  I  K  E  I  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078E04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107717" stop="107322"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPNDWYNDKFMGFAICVVSDQETTWLSVHEGYLQEMPGISIEFTIKSHLRRSTSCLMNIGFVGTNKNVASDHTCLAYVAFEEYWSMYKNHLDTPNNWYQIDFSANSLRKHIFLKSWGIRLVYTDDLQSFTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="112683" PGL_stop="115114"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112683" e_stop="112835"/>
            <exon e_start="112940" e_stop="113148"/>
            <exon e_start="113369" e_stop="113449"/>
            <exon e_start="113953" e_stop="114303"/>
            <exon e_start="114959" e_stop="115114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.980"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="112683" e_stop="112835" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112836" i_stop="112939" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112940" e_stop="113148" e_length="209"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113149" i_stop="113368" i_length="220"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113369" e_stop="113449" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.972">
            <gDNA_intron_boundary i_start="113450" i_stop="113952" i_length="503"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="113953" e_stop="114303" e_length="351"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="114304" i_stop="114958" i_length="655"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="114959" e_stop="115114" e_length="156"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112683" stop="112835"/>
              <exon start="112940" stop="113148"/>
              <exon start="113369" stop="113449"/>
              <exon start="113953" stop="114303"/>
              <exon start="114959" stop="115114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6958" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTAGTAATCATGAAGAAACAAACAATATGACCATTTCTTCTCTTCTTCTTCCTCCTCCTCCTCCTCCTTTCATCAATTACAATAATAATAATAATAATATTTATGGAAAGTCTATTTCCATTCATCAACCTCATCGATTTTCGTTCCGAG : TTATCAATGATTCGAATAGAACAGAGTTAGCTACTGAAGATGCTGATAAACTTGTAGATGGAATGGATTTTGGGGAATTGTGTGATGAGTTTGAATGCATTAGTAGCCCTTCTGTGGAAGCTACTGCTAGGCAGCTAGTTCGAGATATTCTCGAACTACGTGAAGGCAATCGTGCCCTCGGTACCTTTGCTGTCTCTGTCAAGTATAAG : GATCCAGTGAGAAGTTTTACAGGACGAGACAAGTACAAGAGACCATTATGGATAACTGATGCTCTGCAGAATCCTAAACCG : AGTGTGCAAGAAATGGTGATGTTATCAACAAGTGTGTTGAATATTAAGTGGACAATAAAAGGAAAAGCAAAGTCATTGATTGGTAGCATAGGAGGGGATTTGATGATCAAAGTAAATTCAAGATTCACTTTGAATCAAATAAGTGGACAAGTAGTTGAGCATGAAGAGGAATGGGATTTATCAGGATCATCCATCATTGCTCAAGCTTATTTCTGGGCATCGCGACGACTATTCGCTACTGTTGAAGCTGGAAAAGATGTGGTTGATATTGTTAATGACTTGAGTTCTAAATCTGCTAAAGAGAATAAAAACATGGATGTTTATCCTGACCCTTATGGTGATCCAGCGAAG : TTCTTTCAAAGGGATGACAGTTTCCAAAGAGATTTTTACCAAATTGCATTGCTGCTGGCTGTTATATATTTTGTCGTACAGTTCTTGAGGACAACTTTATGAGCTCCTAATTTTAACACTTGTATAATTGTAATTATTAAATCTATGTTTCTATAC</gDNA_template>
            <first_frame> *  L  V  I  M  K  K  Q  T  I  *  P  F  L  L  F  F  F  L  L  L  L  L  L  S  S  I  T  I  I  I  I  I  I  F  M  E  S  L  F  P  F  I  N  L  I  D  F  R  S  E  :  L  S  M  I  R  I  E  Q  S  *  L  L  K  M  L  I  N  L  *  M  E  W  I  L  G  N  C  V  M  S  L  N  A  L  V  A  L  L  W  K  L  L  L  G  S  *  F  E  I  F  S  N  Y  V  K  A  I  V  P  S  V  P  L  L  S  L  S  S  I  R :   I  Q  *  E  V  L  Q  D  E  T  S  T  R  D  H  Y  G  *  L  M  L  C  R  I  L  N  R :   V  C  K  K  W  *  C  Y  Q  Q  V  C  *  I  L  S  G  Q  *  K  E  K  Q  S  H  *  L  V  A  *  E  G  I  *  *  S  K  *  I  Q  D  S  L  *  I  K  *  V  D  K  *  L  S  M  K  R  N  G  I  Y  Q  D  H  P  S  L  L  K  L  I  S  G  H  R  D  D  Y  S  L  L  L  K  L  E  K  M  W  L  I  L  L  M  T  *  V  L  N  L  L  K  R  I  K  T  W  M  F  I  L  T  L  M  V  I  Q  R  S :   S  F  K  G  M  T  V  S  K  E  I  F  T  K  L  H  C  C  W  L  L  Y  I  L  S  Y  S  S  *  G  Q  L  Y  E  L  L  I  L  T  L  V  *  L  *  L  L  N  L  C  F  Y   </first_frame>
            <second_frame>  N  *  *  S  *  R  N  K  Q  Y  D  H  F  F  S  S  S  S  S  S  S  S  S  F  H  Q  L  Q  *  *  *  *  *  Y  L  W  K  V  Y  F  H  S  S  T  S  S  I  F  V  P  S :   Y  Q  *  F  E  *  N  R  V  S  Y  *  R  C  *  *  T  C  R  W  N  G  F  W  G  I  V  *  *  V  *  M  H  *  *  P  F  C  G  S  Y  C  *  A  A  S  S  R  Y  S  R  T  T  *  R  Q  S  C  P  R  Y  L  C  C  L  C  Q  V  *   : G  S  S  E  K  F  Y  R  T  R  Q  V  Q  E  T  I  M  D  N  *  C  S  A  E  S  *  T   : E  C  A  R  N  G  D  V  I  N  K  C  V  E  Y  *  V  D  N  K  R  K  S  K  V  I  D  W  *  H  R  R  G  F  D  D  Q  S  K  F  K  I  H  F  E  S  N  K  W  T  S  S  *  A  *  R  G  M  G  F  I  R  I  I  H  H  C  S  S  L  F  L  G  I  A  T  T  I  R  Y  C  *  S  W  K  R  C  G  *  Y  C  *  *  L  E  F  *  I  C  *  R  E  *  K  H  G  C  L  S  *  P  L  W  *  S  S  E   : V  L  S  K  G  *  Q  F  P  K  R  F  L  P  N  C  I  A  A  G  C  Y  I  F  C  R  T  V  L  E  D  N  F  M  S  S  *  F  *  H  L  Y  N  C  N  Y  *  I  Y  V  S  I  </second_frame>
            <third_frame>   I  S  N  H  E  E  T  N  N  M  T  I  S  S  L  L  L  P  P  P  P  P  P  F  I  N  Y  N  N  N  N  N  N  I  Y  G  K  S  I  S  I  H  Q  P  H  R  F  S  F  R   : V  I  N  D  S  N  R  T  E  L  A  T  E  D  A  D  K  L  V  D  G  M  D  F  G  E  L  C  D  E  F  E  C  I  S  S  P  S  V  E  A  T  A  R  Q  L  V  R  D  I  L  E  L  R  E  G  N  R  A  L  G  T  F  A  V  S  V  K  Y  K  :  D  P  V  R  S  F  T  G  R  D  K  Y  K  R  P  L  W  I  T  D  A  L  Q  N  P  K  P  :  S  V  Q  E  M  V  M  L  S  T  S  V  L  N  I  K  W  T  I  K  G  K  A  K  S  L  I  G  S  I  G  G  D  L  M  I  K  V  N  S  R  F  T  L  N  Q  I  S  G  Q  V  V  E  H  E  E  E  W  D  L  S  G  S  S  I  I  A  Q  A  Y  F  W  A  S  R  R  L  F  A  T  V  E  A  G  K  D  V  V  D  I  V  N  D  L  S  S  K  S  A  K  E  N  K  N  M  D  V  Y  P  D  P  Y  G  D  P  A  K  :  F  F  Q  R  D  D  S  F  Q  R  D  F  Y  Q  I  A  L  L  L  A  V  I  Y  F  V  V  Q  F  L  R  T  T  L  *  A  P  N  F  N  T  C  I  I  V  I  I  K  S  M  F  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0078E04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112685" stop="112835"/>
                    <exon start="112940" stop="113148"/>
                    <exon start="113369" stop="113449"/>
                    <exon start="113953" stop="114303"/>
                    <exon start="114959" stop="115060"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISNHEETNNMTISSLLLPPPPPPFINYNNNNNNIYGKSISIHQPHRFSFRVINDSNRTELATEDADKLVDGMDFGELCDEFECISSPSVEATARQLVRDILELREGNRALGTFAVSVKYKDPVRSFTGRDKYKRPLWITDALQNPKPSVQEMVMLSTSVLNIKWTIKGKAKSLIGSIGGDLMIKVNSRFTLNQISGQVVEHEEEWDLSGSSIIAQAYFWASRRLFATVEAGKDVVDIVNDLSSKSAKENKNMDVYPDPYGDPAKFFQRDDSFQRDFYQIALLLAVIYFVVQFLRTTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 6 chains have been computed
$ 
$ memory statistics:
$ 5848 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 1949 bytes was the average size of a spliced alignment
$ 8008 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2669 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 7 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 17:37:29
-->
